Citrus Sinensis ID: 014834
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 417 | 2.2.26 [Sep-21-2011] | |||||||
| O82043 | 581 | Ketol-acid reductoisomera | N/A | no | 0.937 | 0.672 | 0.815 | 0.0 | |
| Q05758 | 591 | Ketol-acid reductoisomera | yes | no | 0.856 | 0.604 | 0.871 | 0.0 | |
| Q01292 | 595 | Ketol-acid reductoisomera | N/A | no | 0.928 | 0.650 | 0.778 | 0.0 | |
| Q65XK0 | 578 | Ketol-acid reductoisomera | yes | no | 0.810 | 0.584 | 0.872 | 1e-175 | |
| P38674 | 402 | Ketol-acid reductoisomera | N/A | no | 0.707 | 0.733 | 0.336 | 1e-36 | |
| P78827 | 404 | Probable ketol-acid reduc | yes | no | 0.678 | 0.700 | 0.337 | 2e-35 | |
| P06168 | 395 | Ketol-acid reductoisomera | yes | no | 0.609 | 0.643 | 0.322 | 3e-30 | |
| B3QSP0 | 338 | Ketol-acid reductoisomera | yes | no | 0.498 | 0.615 | 0.351 | 9e-29 | |
| Q8DW43 | 340 | Ketol-acid reductoisomera | yes | no | 0.508 | 0.623 | 0.346 | 2e-28 | |
| A9BGP6 | 330 | Ketol-acid reductoisomera | yes | no | 0.491 | 0.621 | 0.347 | 4e-28 |
| >sp|O82043|ILV5_PEA Ketol-acid reductoisomerase, chloroplastic OS=Pisum sativum GN=PGAAIR PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/396 (81%), Positives = 346/396 (87%), Gaps = 5/396 (1%)
Query: 18 SPSSETLK----GAFKHLNLAFFSSTAKSLRALKTTRGRGSALGAQMASETALKTPFLLD 73
S SS+TL +F NL+F + +S+RA ++ GSALGA S P LD
Sbjct: 13 SASSKTLAKPVAASFAPTNLSFSKLSPQSIRARRSIT-VGSALGATKVSAPPATHPVSLD 71
Query: 74 FETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDS 133
FETSVFKK+ ++LA +E+IVRGGRDLF LLPDAF GI QIGVIGWGSQGPAQAQNLRDS
Sbjct: 72 FETSVFKKERVNLAGHEEYIVRGGRDLFHLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDS 131
Query: 134 LAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD 193
L EAKSDIVVKVGLRKGS SF EAR AGF+EE GTLGDI+ETISGSDLVLLLISD+AQAD
Sbjct: 132 LVEAKSDIVVKVGLRKGSSSFNEAREAGFSEEKGTLGDIWETISGSDLVLLLISDSAQAD 191
Query: 194 NYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKE 253
NYEKIFS +KPNSILGLSHGFLLGHLQSIGLDFPKN VIAVCPKGMGPSVRRLYVQGKE
Sbjct: 192 NYEKIFSHLKPNSILGLSHGFLLGHLQSIGLDFPKNFSVIAVCPKGMGPSVRRLYVQGKE 251
Query: 254 INGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAV 313
INGAGINSSF VHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAV
Sbjct: 252 INGAGINSSFGVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAV 311
Query: 314 HGIVESLFRRFTENGMSEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKA 373
HGIVESLFRR+TENGMSEDLAYKNTVE ITG+ISK ISTQGMLAVYN+ S + KKEFEKA
Sbjct: 312 HGIVESLFRRYTENGMSEDLAYKNTVESITGVISKTISTQGMLAVYNALSEDGKKEFEKA 371
Query: 374 YSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFY 409
YSAS+YPCMEILYECYEDVA+GSEIRSVVLAGRRFY
Sbjct: 372 YSASFYPCMEILYECYEDVASGSEIRSVVLAGRRFY 407
|
Pisum sativum (taxid: 3888) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 8EC: 6 |
| >sp|Q05758|ILV5_ARATH Ketol-acid reductoisomerase, chloroplastic OS=Arabidopsis thaliana GN=At3g58610 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/357 (87%), Positives = 332/357 (92%)
Query: 53 GSALGAQMASETALKTPFLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGIN 112
GS+L A+M S +A+K P LDFETSVFKK+ +SLA +E+IVRGGRDLFK LPDAF GI
Sbjct: 61 GSSLAARMVSSSAVKAPVSLDFETSVFKKEKVSLAGYEEYIVRGGRDLFKHLPDAFKGIK 120
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
QIGVIGWGSQGPAQAQNLRDSL EAKSDIVVK+GLRKGSRSF EARAAGFTEE+GTLGDI
Sbjct: 121 QIGVIGWGSQGPAQAQNLRDSLVEAKSDIVVKIGLRKGSRSFEEARAAGFTEESGTLGDI 180
Query: 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGV 232
+ETI+GSDLVLLLISDAAQADNYEKIFS MKPNSILGLSHGFLLGHLQS GLDFPKNI V
Sbjct: 181 WETIAGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSSGLDFPKNISV 240
Query: 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFAT 292
+AVCPKGMGPSVRRLYVQGKEINGAGIN+SFAVHQDVDGRA +VALGWSVALGSPFTFAT
Sbjct: 241 VAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQDVDGRAADVALGWSVALGSPFTFAT 300
Query: 293 TLEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVECITGIISKIIST 352
TLEQEY+SDIFGERGILLGAVHGIVESLFRR+TENGMSEDLAYKNTVECITG IS+ IST
Sbjct: 301 TLEQEYRSDIFGERGILLGAVHGIVESLFRRYTENGMSEDLAYKNTVECITGTISRTIST 360
Query: 353 QGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFY 409
QGMLAVYNS S E KK+FE AYSAS+YPCMEILYECYEDV +GSEIRSVVLAGRRFY
Sbjct: 361 QGMLAVYNSLSEEGKKDFETAYSASFYPCMEILYECYEDVQSGSEIRSVVLAGRRFY 417
|
Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|Q01292|ILV5_SPIOL Ketol-acid reductoisomerase, chloroplastic OS=Spinacia oleracea GN=AHRI PE=1 SV=1 | Back alignment and function description |
|---|
Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/407 (77%), Positives = 351/407 (86%), Gaps = 20/407 (4%)
Query: 14 KFSPSPSSETLKGAFKHLNLAFF--SSTAKSLRALKTTR-------GRGSALGAQMASET 64
K SP PS+ LNL F SST K+ R+LK R G GSAL AQM S
Sbjct: 26 KQSPKPSA---------LNLGFLGSSSTIKACRSLKAARVLPSGANGGGSALSAQMVSAP 76
Query: 65 ALKTP--FLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQ 122
++ TP DF++SVFKK+ ++L+ DE+IVRGGR+LF LLPDAF GI QIGVIGWGSQ
Sbjct: 77 SINTPSATTFDFDSSVFKKEKVTLSGHDEYIVRGGRNLFPLLPDAFKGIKQIGVIGWGSQ 136
Query: 123 GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV 182
PAQAQNL+DSL EAKSD+VVK+GLRKGS SFAEARAAGF+EENGTLGD++ETISGSDLV
Sbjct: 137 APAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLV 196
Query: 183 LLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGP 242
LLLISD+AQADNYEK+FS MKPNSILGLSHGFLLGHLQS+G DFPKNI VIAVCPKGMGP
Sbjct: 197 LLLISDSAQADNYEKVFSHMKPNSILGLSHGFLLGHLQSLGQDFPKNISVIAVCPKGMGP 256
Query: 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDI 302
SVRRLYVQGKE+NGAGINSSFAVHQDVDGRAT+VALGWS+ALGSPFTFATTLEQEYKSDI
Sbjct: 257 SVRRLYVQGKEVNGAGINSSFAVHQDVDGRATDVALGWSIALGSPFTFATTLEQEYKSDI 316
Query: 303 FGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVECITGIISKIISTQGMLAVYNSF 362
FGERGILLGAVHGIVE LFRR+TE+GMSEDLAYKNTVECITG+ISK IST+GMLA+YNS
Sbjct: 317 FGERGILLGAVHGIVECLFRRYTESGMSEDLAYKNTVECITGVISKTISTKGMLALYNSL 376
Query: 363 SGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFY 409
S E KK+F+ AYSASYYP M+ILYECYEDVA+GSEIRSVVLAGRRFY
Sbjct: 377 SEEGKKDFQAAYSASYYPSMDILYECYEDVASGSEIRSVVLAGRRFY 423
|
Spinacia oleracea (taxid: 3562) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|Q65XK0|ILV5_ORYSJ Ketol-acid reductoisomerase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0573700 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 615 bits (1585), Expect = e-175, Method: Compositional matrix adjust.
Identities = 295/338 (87%), Positives = 317/338 (93%)
Query: 72 LDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLR 131
LDF+TSVF K+ +SLA +E+IVRGGR+LF LLP+AF GI QIGVIGWGSQGPAQAQNLR
Sbjct: 68 LDFDTSVFNKEKVSLAGHEEYIVRGGRNLFPLLPEAFKGIKQIGVIGWGSQGPAQAQNLR 127
Query: 132 DSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191
DSLAEAKSDIVVK+GLRKGS+SF EARAAGFTEE+GTLGDI+ET+SGSDLVLLLISDAAQ
Sbjct: 128 DSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLISDAAQ 187
Query: 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251
ADNYEKIFS MKPNSILGLSHGFLLGHLQS GLDFPKNI VIAVCPKGMGPSVRRLYVQG
Sbjct: 188 ADNYEKIFSHMKPNSILGLSHGFLLGHLQSAGLDFPKNISVIAVCPKGMGPSVRRLYVQG 247
Query: 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLG 311
KEINGAGINSSFAVHQDVDGRAT+VALGWSVALGSPFTFATTLEQEYKSDIFGERGILLG
Sbjct: 248 KEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLG 307
Query: 312 AVHGIVESLFRRFTENGMSEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFE 371
AVHGIVE+LFRR+TE GM E++AYKNTVE ITGIISK IS +GML VYNS + E KKEF
Sbjct: 308 AVHGIVEALFRRYTEQGMDEEMAYKNTVEGITGIISKTISKKGMLEVYNSLTEEGKKEFN 367
Query: 372 KAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFY 409
KAYSAS+YPCM+ILYECYEDVA+GSEIRSVVLAGRRFY
Sbjct: 368 KAYSASFYPCMDILYECYEDVASGSEIRSVVLAGRRFY 405
|
Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|P38674|ILV5_NEUCR Ketol-acid reductoisomerase, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ilv-2 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 154 bits (389), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 106/315 (33%), Positives = 165/315 (52%), Gaps = 20/315 (6%)
Query: 88 NRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGL 147
+++E R KLL D F + + +IG+GSQG Q NLRD+ + V VG+
Sbjct: 62 HKEEVHERADWPAEKLL-DYFKN-DTLALIGYGSQGHGQGLNLRDN------GLNVIVGV 113
Query: 148 RKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSI 207
RK +S+ +A G+ L D+ E IS +V+ L+SDAAQ++ + I +
Sbjct: 114 RKNGKSWEDAIQDGWVP-GKNLFDVDEAISRGTIVMNLLSDAAQSETWPHIKPQITKGKT 172
Query: 208 LGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267
L SHGF ++ P ++ VI V PKG G +VR L+ +G+ GINSSFAV+Q
Sbjct: 173 LYFSHGFSPVFKDLTKVEVPTDVDVILVAPKGSGRTVRSLFREGR-----GINSSFAVYQ 227
Query: 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESLFRRFTEN 327
DV G+A A+ VA+GS + + TT E+E SD++GERG L+G +HG+ + + E
Sbjct: 228 DVTGKAKEKAVALGVAVGSGYLYETTFEKEVYSDLYGERGCLMGGIHGMFLAQYEVLRER 287
Query: 328 GMSEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKK---EFEKAYSASYYPCMEI 384
G S A+ TVE T + +I GM ++++ S ++ ++ + + P
Sbjct: 288 GHSPSEAFNETVEEATQSLYPLIGAHGMDWMFDACSTTARRGAIDWTPKFKDALKPVFNN 347
Query: 385 LYECYEDVAAGSEIR 399
LY+ V G E +
Sbjct: 348 LYDS---VKNGDETK 359
|
Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|P78827|ILV5_SCHPO Probable ketol-acid reductoisomerase, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ilv5 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 150 bits (378), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 100/296 (33%), Positives = 156/296 (52%), Gaps = 13/296 (4%)
Query: 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163
L D F + + +IG+GSQG Q N RD + V VG+RK S+ +A G+
Sbjct: 78 LVDYFKN-DTLAIIGYGSQGHGQGLNARDQ------GLNVIVGVRKDGASWKQAIEDGWV 130
Query: 164 EENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIG 223
TL + E I +++ L+SDAAQ + + KI + L SHGF +
Sbjct: 131 P-GKTLFPVEEAIKKGSIIMNLLSDAAQTETWPKIAPLITKGKTLYFSHGFSVIFKDQTK 189
Query: 224 LDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA 283
+ PK++ VI V PKG G +VR L+ +G+ GINSSFAV+QDV G+A A+G +VA
Sbjct: 190 IHPPKDVDVILVAPKGSGRTVRTLFKEGR-----GINSSFAVYQDVTGKAQEKAIGLAVA 244
Query: 284 LGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVECIT 343
+GS F + TT ++E SD+ GERG L+G ++G+ + ++ E G S A+ TVE T
Sbjct: 245 VGSGFIYQTTFKKEVISDLVGERGCLMGGINGLFLAQYQVLRERGHSPAEAFNETVEEAT 304
Query: 344 GIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIR 399
+ +I G+ ++ + S ++ ++L E Y++V G+E +
Sbjct: 305 QSLYPLIGKYGLDYMFAACSTTARRGAIDWTPRFLEANKKVLNELYDNVENGNEAK 360
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|P06168|ILV5_YEAST Ketol-acid reductoisomerase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ILV5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 132 bits (333), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 89/276 (32%), Positives = 140/276 (50%), Gaps = 22/276 (7%)
Query: 129 NLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188
NLRD+ + V +G+RK S+ A G+ L + + I V+ L+SD
Sbjct: 95 NLRDN------GLNVIIGVRKDGASWKAAIEDGWVP-GKNLFTVEDAIKRGSYVMNLLSD 147
Query: 189 AAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLY 248
AAQ++ + I + L SHGF ++ PK++ VI V PKG G +VR L+
Sbjct: 148 AAQSETWPAIKPLLTKGKTLYFSHGFSPVFKDLTHVEPPKDLDVILVAPKGSGRTVRSLF 207
Query: 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGI 308
+G+ GINSS+AV DV G+A A +VA+GS + + TT E+E SD++GERG
Sbjct: 208 KEGR-----GINSSYAVWNDVTGKAHEKAQALAVAIGSGYVYQTTFEREVNSDLYGERGC 262
Query: 309 LLGAVHGIVESLFRRFTENGMSEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKK 368
L+G +HG+ + + ENG S A+ TVE T + +I GM +Y++ S ++
Sbjct: 263 LMGGIHGMFLAQYDVLRENGHSPSEAFNETVEEATQSLYPLIGKYGMDYMYDACSTTARR 322
Query: 369 EFEKAYSASYYPCME-----ILYECYEDVAAGSEIR 399
+ +YP + + + YE G+E +
Sbjct: 323 G-----ALDWYPIFKNALKPVFQDLYESTKNGTETK 353
|
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|B3QSP0|ILVC_CHLT3 Ketol-acid reductoisomerase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=ilvC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 128 bits (321), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 82/233 (35%), Positives = 123/233 (52%), Gaps = 25/233 (10%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
+I V+G+GSQG A A NL+DS + V VGL++ S S+ +A AG E
Sbjct: 18 KIAVLGFGSQGHAHALNLKDS------GMNVCVGLKENSASWVKAEKAGLMVEKTA---- 67
Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIG 231
E + +D++++LI D Q YE I +KP L HGF + + Q + P N+
Sbjct: 68 -EAVKWADIIMVLIPDQVQKAVYENDIAPNLKPGDTLAFGHGFNIHYKQIVP---PANVN 123
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALG--SPFT 289
VI + PK G VRR +V+G AG+ AVHQ+VDG+A ++AL W+ LG
Sbjct: 124 VIMIAPKSPGHLVRRTFVEG-----AGVPCLIAVHQNVDGKAKDIALAWAKGLGGTKAGV 178
Query: 290 FATTLEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVECI 342
T + E ++D+FGE+ +L G ++++ F E G +LAY EC+
Sbjct: 179 IETNFKDETETDLFGEQAVLCGGSAELIKAGFDTLVEGGYPAELAY---FECM 228
|
Chloroherpeton thalassium (strain ATCC 35110 / GB-78) (taxid: 517418) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|Q8DW43|ILVC_STRMU Ketol-acid reductoisomerase OS=Streptococcus mutans serotype c (strain ATCC 700610 / UA159) GN=ilvC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 134/245 (54%), Gaps = 33/245 (13%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
+I VIG+GSQG A AQNLRDS D+++ G+R G +SF +A+ GF D
Sbjct: 20 KIAVIGYGSQGHAHAQNLRDS----GHDVII--GVRHG-KSFDKAKEDGF--------DT 64
Query: 173 YETISGS---DLVLLLISDAAQADNY-EKIFSCMKPNSILGLSHGFLL--GHLQSIGLDF 226
YE + D++++L D Q D Y ++I + LG +HGF + G++++
Sbjct: 65 YEVGEATKLADIIMVLAPDEIQKDIYKDEIAPNLSAGKALGFAHGFNIHFGYIKA----- 119
Query: 227 PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS 286
P+++ V V PKG G VRR Y +G G+ S +AV+Q+ G A N+AL W+ +GS
Sbjct: 120 PEDVDVFMVAPKGPGHLVRRTYTEG-----FGVPSLYAVYQNPTGNAENIALDWAKGIGS 174
Query: 287 PFT--FATTLEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVECITG 344
TT ++E + D+FGE+ +L+G + ++E+ F TE G + LAY + +
Sbjct: 175 ARVGLLVTTFKEETEEDLFGEQAVLMGGLTHLIEAGFEVLTEAGYAPQLAYFEVLHEMKL 234
Query: 345 IISKI 349
I+ I
Sbjct: 235 IVDLI 239
|
Streptococcus mutans (taxid: 1309) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|A9BGP6|ILVC_PETMO Ketol-acid reductoisomerase OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=ilvC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 126 bits (316), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 82/236 (34%), Positives = 127/236 (53%), Gaps = 31/236 (13%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
I V+G+GSQG AQAQNL+DS + V +GL+K S+S A+ GF ++Y
Sbjct: 20 IAVLGYGSQGHAQAQNLKDS------GLKVIIGLKKDSKSKETAQRDGF--------EVY 65
Query: 174 ET---ISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSIGLDFPKN 229
ET + D++ +LI D Q++ Y+K I + + LG SHGF + Q + PKN
Sbjct: 66 ETSEAVKKGDIIQVLIPDEVQSEVYKKDIEPNLDEGNALGFSHGFNIHFGQIVP---PKN 122
Query: 230 IGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF- 288
+ V V PK G VRR+Y++GK G+ AVHQD G+A + L ++ +G
Sbjct: 123 VDVFMVAPKSPGHLVRRMYLEGK-----GVPGLLAVHQDFSGKAKELGLSYAKGIGCTRA 177
Query: 289 -TFATTLEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVECIT 343
TT ++E ++D+FGE+ +L G ++++ F E G ++AY EC+
Sbjct: 178 GVIKTTFKEETETDLFGEQAVLCGGTTSLIKAGFETLVEAGYQPEIAY---FECLN 230
|
Petrotoga mobilis (strain DSM 10674 / SJ95) (taxid: 403833) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 417 | ||||||
| 225446579 | 588 | PREDICTED: ketol-acid reductoisomerase, | 0.932 | 0.661 | 0.838 | 0.0 | |
| 255568281 | 584 | ketol-acid reductoisomerase, chloroplast | 0.887 | 0.633 | 0.870 | 0.0 | |
| 224079219 | 589 | predicted protein [Populus trichocarpa] | 0.906 | 0.641 | 0.837 | 0.0 | |
| 341958461 | 587 | chloroplast acetohydroxy acid isomerored | 0.916 | 0.650 | 0.831 | 0.0 | |
| 356549858 | 586 | PREDICTED: ketol-acid reductoisomerase, | 0.916 | 0.651 | 0.831 | 0.0 | |
| 356543900 | 586 | PREDICTED: ketol-acid reductoisomerase, | 0.916 | 0.651 | 0.829 | 0.0 | |
| 6225542 | 581 | RecName: Full=Ketol-acid reductoisomeras | 0.937 | 0.672 | 0.815 | 0.0 | |
| 297817174 | 594 | ketol-acid reductoisomerase [Arabidopsis | 0.856 | 0.601 | 0.873 | 0.0 | |
| 15231092 | 591 | ketol-acid reductoisomerase [Arabidopsis | 0.856 | 0.604 | 0.871 | 0.0 | |
| 449438145 | 588 | PREDICTED: ketol-acid reductoisomerase, | 0.971 | 0.688 | 0.785 | 0.0 |
| >gi|225446579|ref|XP_002280094.1| PREDICTED: ketol-acid reductoisomerase, chloroplastic [Vitis vinifera] gi|147767264|emb|CAN69003.1| hypothetical protein VITISV_005408 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/396 (83%), Positives = 356/396 (89%), Gaps = 7/396 (1%)
Query: 21 SETLKGAFKHL--NLAFFSSTA-KSLRA--LKTTR--GRGSALGAQMASETALKTPFLLD 73
++TLK +L NL F SS A +SLRA L T+ G GSAL A+M S +K P LLD
Sbjct: 19 TKTLKSDSTNLSPNLGFLSSKAFQSLRARVLPTSSVGGTGSALAARMVSTPLIKPPALLD 78
Query: 74 FETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDS 133
FETSVFKK+ +SLA DE+IVRGGRDLF LLPDAF GI QIGVIGWGSQGPAQAQNLRDS
Sbjct: 79 FETSVFKKEKVSLAGHDEYIVRGGRDLFHLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDS 138
Query: 134 LAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD 193
L EAKS+IVVK+GLRKGS+SFAEARAAGFTEENGTLGDIYETISGSDLV+LLISD+AQAD
Sbjct: 139 LVEAKSNIVVKIGLRKGSKSFAEARAAGFTEENGTLGDIYETISGSDLVMLLISDSAQAD 198
Query: 194 NYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKE 253
NYEKIFS MKPNSILGLSHGFLLGHLQS+GLDFPKNI VIAVCPKGMGPSVRRLYVQGKE
Sbjct: 199 NYEKIFSHMKPNSILGLSHGFLLGHLQSLGLDFPKNISVIAVCPKGMGPSVRRLYVQGKE 258
Query: 254 INGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAV 313
+NGAGINSSFAV QDVDGRAT+VALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAV
Sbjct: 259 VNGAGINSSFAVQQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAV 318
Query: 314 HGIVESLFRRFTENGMSEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKA 373
HGIVESLFRR+TE+G SEDLAYKNTVECITGIISK ISTQGMLAVYN+ S + KKEFE A
Sbjct: 319 HGIVESLFRRYTEHGTSEDLAYKNTVECITGIISKTISTQGMLAVYNALSEDGKKEFEAA 378
Query: 374 YSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFY 409
YSASYYPCM+ILYECYEDVA+GSEIRSVVLAGRRFY
Sbjct: 379 YSASYYPCMDILYECYEDVASGSEIRSVVLAGRRFY 414
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255568281|ref|XP_002525115.1| ketol-acid reductoisomerase, chloroplast precursor, putative [Ricinus communis] gi|223535574|gb|EEF37242.1| ketol-acid reductoisomerase, chloroplast precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/371 (87%), Positives = 342/371 (92%), Gaps = 1/371 (0%)
Query: 40 AKSLRALKTTRGRGSALGA-QMASETALKTPFLLDFETSVFKKDAISLANRDEFIVRGGR 98
+KS ++L+ G GSA+GA M S A+K LDFET+VFKK+ ISLA DE+IVRGGR
Sbjct: 40 SKSFKSLRANGGGGSAVGACSMVSMPAVKPLISLDFETTVFKKEKISLAGHDEYIVRGGR 99
Query: 99 DLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR 158
DLFKLLPDAF GI QIGVIGWGSQGPAQAQNLRDSL EAKSDIVVK+GLRKGSRSFAEAR
Sbjct: 100 DLFKLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLGEAKSDIVVKIGLRKGSRSFAEAR 159
Query: 159 AAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGH 218
+AGFTEENGTLGDI+ET+SGSDLVLLLISDAAQADNYEK+FS MKPNSILGLSHGFLLGH
Sbjct: 160 SAGFTEENGTLGDIWETVSGSDLVLLLISDAAQADNYEKVFSHMKPNSILGLSHGFLLGH 219
Query: 219 LQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVAL 278
LQS+GLDFPKNI VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRAT+VAL
Sbjct: 220 LQSMGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATDVAL 279
Query: 279 GWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNT 338
GWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESLFRR+TENGMSED AYKNT
Sbjct: 280 GWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESLFRRYTENGMSEDEAYKNT 339
Query: 339 VECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEI 398
VECITGIISK ISTQGMLAVYNS S E KK+FE AYSASYYPCM+ILYECYEDVA GSEI
Sbjct: 340 VECITGIISKTISTQGMLAVYNSLSEEGKKQFETAYSASYYPCMDILYECYEDVACGSEI 399
Query: 399 RSVVLAGRRFY 409
RSVVLAGRRFY
Sbjct: 400 RSVVLAGRRFY 410
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224079219|ref|XP_002305797.1| predicted protein [Populus trichocarpa] gi|222848761|gb|EEE86308.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/382 (83%), Positives = 346/382 (90%), Gaps = 4/382 (1%)
Query: 32 NLAFFSS-TAKSLRALKTTRGR--GSALGAQMASETALKTPFL-LDFETSVFKKDAISLA 87
NL F SS ++K+ + LK + G G LGA+M S P + LDFETSVFKK+ +SLA
Sbjct: 34 NLGFSSSVSSKTFKPLKASNGNVTGGVLGAKMVSSVPSVKPLISLDFETSVFKKEKVSLA 93
Query: 88 NRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGL 147
DE+IVRGGRDLF LLPDAF GI QIGV+GWGSQGPAQAQNLRDSLAEAKSDI VK+GL
Sbjct: 94 GHDEYIVRGGRDLFHLLPDAFKGIKQIGVLGWGSQGPAQAQNLRDSLAEAKSDIKVKIGL 153
Query: 148 RKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSI 207
RKGSRSFAEARAAGFTEENGTLGDI+ET+SGSDLVLLLISDAAQADNYEK+FS MKPNSI
Sbjct: 154 RKGSRSFAEARAAGFTEENGTLGDIWETVSGSDLVLLLISDAAQADNYEKVFSHMKPNSI 213
Query: 208 LGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267
LGLSHGFLLGHLQS+GLDFPKNI VIAVCPKGMGPSVRRLYVQGKE+NGAGINSSFAVHQ
Sbjct: 214 LGLSHGFLLGHLQSMGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEVNGAGINSSFAVHQ 273
Query: 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESLFRRFTEN 327
DVDGRAT+VALGWSVALGSPFTFATTLEQEY+SDIFGERGILLGAVHGIVESLFRR+TEN
Sbjct: 274 DVDGRATDVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRYTEN 333
Query: 328 GMSEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYE 387
GMSED AYKNTVECITGIIS+ IST+GMLAVYNS + E KKEFE AYSAS+YPCM+ILYE
Sbjct: 334 GMSEDEAYKNTVECITGIISRTISTKGMLAVYNSLTPEGKKEFETAYSASFYPCMDILYE 393
Query: 388 CYEDVAAGSEIRSVVLAGRRFY 409
CYEDVA+GSEIRSVVLAGRRFY
Sbjct: 394 CYEDVASGSEIRSVVLAGRRFY 415
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|341958461|gb|AEL13846.1| chloroplast acetohydroxy acid isomeroreductase [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/386 (83%), Positives = 351/386 (90%), Gaps = 4/386 (1%)
Query: 28 FKHLNLAFFSSTAK----SLRALKTTRGRGSALGAQMASETALKTPFLLDFETSVFKKDA 83
F NLA SS++K SLR + GSALGA+M S A+K P LLDF+T VFKK+
Sbjct: 28 FSATNLALQSSSSKLGFKSLRLRRCAAASGSALGARMVSVPAVKAPALLDFDTKVFKKEK 87
Query: 84 ISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV 143
I+LA DE+IV+GGRDLF LLPDAF GI QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV
Sbjct: 88 INLAGHDEYIVKGGRDLFHLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV 147
Query: 144 KVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMK 203
K+GLRKGSRSFAEARAAGF+EENGTLGDI+ET+SGSDLV+LLISD+AQADNYEKI S MK
Sbjct: 148 KIGLRKGSRSFAEARAAGFSEENGTLGDIWETVSGSDLVMLLISDSAQADNYEKILSHMK 207
Query: 204 PNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263
PNSILGLSHGFLLGHLQS+GLDFPKNI VIAVCPKGMGPSVRRLYVQGKEINGAGIN+SF
Sbjct: 208 PNSILGLSHGFLLGHLQSLGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINASF 267
Query: 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESLFRR 323
AVHQDVDGRAT+VALGWSVALGSPFTFATTLEQEY+SDIFGERGILLGAVHG+VESLFRR
Sbjct: 268 AVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGVVESLFRR 327
Query: 324 FTENGMSEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCME 383
+TENGM+EDLAYKNTVE ITGIISK IST+GMLAVYN+ S ++K+EFEKAYSAS+YPCME
Sbjct: 328 YTENGMNEDLAYKNTVESITGIISKTISTKGMLAVYNALSEDEKREFEKAYSASFYPCME 387
Query: 384 ILYECYEDVAAGSEIRSVVLAGRRFY 409
ILYECYEDVA+GSEIRSVVLAGRRFY
Sbjct: 388 ILYECYEDVASGSEIRSVVLAGRRFY 413
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356549858|ref|XP_003543307.1| PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/386 (83%), Positives = 351/386 (90%), Gaps = 4/386 (1%)
Query: 28 FKHLNLAFFSSTAK----SLRALKTTRGRGSALGAQMASETALKTPFLLDFETSVFKKDA 83
F NLA SS++K SLR + GSALGA+M S A+K P LLDF+T VFKK+
Sbjct: 28 FSATNLALQSSSSKLGFKSLRLRRCAAASGSALGARMVSVPAVKAPALLDFDTKVFKKEK 87
Query: 84 ISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV 143
I+LA DE+IV+GGRDLF LLPDAF GI QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV
Sbjct: 88 INLAGHDEYIVKGGRDLFHLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV 147
Query: 144 KVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMK 203
K+GLRKGSRSFAEARAAGF+EENGTLGDI+ET+SGSDLV+LLISD+AQADNYEKI S MK
Sbjct: 148 KIGLRKGSRSFAEARAAGFSEENGTLGDIWETVSGSDLVMLLISDSAQADNYEKILSHMK 207
Query: 204 PNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263
PNSILGLSHGFLLGHLQS+GLDFPKNI VIAVCPKGMGPSVRRLYVQGKEINGAGIN+SF
Sbjct: 208 PNSILGLSHGFLLGHLQSLGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINASF 267
Query: 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESLFRR 323
AVHQDVDGRAT+VALGWSVALGSPFTFATTLEQEY+SDIFGERGILLGAVHG+VESLFRR
Sbjct: 268 AVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGVVESLFRR 327
Query: 324 FTENGMSEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCME 383
+TENGM+EDLAYKNTVE ITGIISK IST+GMLAVYN+ S ++K+EFEKAYSAS+YPCME
Sbjct: 328 YTENGMNEDLAYKNTVESITGIISKTISTKGMLAVYNALSEDEKREFEKAYSASFYPCME 387
Query: 384 ILYECYEDVAAGSEIRSVVLAGRRFY 409
ILYECYEDVA+GSEIRSVVLAGRRFY
Sbjct: 388 ILYECYEDVASGSEIRSVVLAGRRFY 413
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356543900|ref|XP_003540396.1| PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/386 (82%), Positives = 351/386 (90%), Gaps = 4/386 (1%)
Query: 28 FKHLNLAFFSSTAK----SLRALKTTRGRGSALGAQMASETALKTPFLLDFETSVFKKDA 83
F NLA SS++K SL+ + GSALGA+M S A+K P LLDF+T VFKK+
Sbjct: 28 FSATNLALQSSSSKLGFKSLKLHRCAAAAGSALGARMVSAPAVKAPALLDFDTKVFKKEK 87
Query: 84 ISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV 143
I+LA DE+IV+GGRDLF LLPDAF GI QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV
Sbjct: 88 INLAGHDEYIVKGGRDLFHLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV 147
Query: 144 KVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMK 203
K+GLRKGSRSFAEARAAGF+EENGTLGDI+ET+SGSDLV+LLISD+AQADNYEKI S MK
Sbjct: 148 KIGLRKGSRSFAEARAAGFSEENGTLGDIWETVSGSDLVMLLISDSAQADNYEKILSHMK 207
Query: 204 PNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263
PNSILGLSHGFLLGHLQS+GLDFPKNI VIAVCPKGMGPSVRRLYVQGKEINGAGIN+SF
Sbjct: 208 PNSILGLSHGFLLGHLQSLGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINASF 267
Query: 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESLFRR 323
AVHQDVDGRAT+VALGWSVALGSPFTFATTLEQEY+SDIFGERGILLGAVHG+VESLFRR
Sbjct: 268 AVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGVVESLFRR 327
Query: 324 FTENGMSEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCME 383
+T+NGM+EDLAYKNTVE ITGIISK IST+GMLAVYN+ S ++K+EFEKAYSASYYPCME
Sbjct: 328 YTDNGMNEDLAYKNTVESITGIISKTISTKGMLAVYNALSEDEKREFEKAYSASYYPCME 387
Query: 384 ILYECYEDVAAGSEIRSVVLAGRRFY 409
ILYECYEDVA+GSEIRSVVLAGRRFY
Sbjct: 388 ILYECYEDVASGSEIRSVVLAGRRFY 413
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|6225542|sp|O82043.1|ILV5_PEA RecName: Full=Ketol-acid reductoisomerase, chloroplastic; AltName: Full=Acetohydroxy-acid reductoisomerase; AltName: Full=Alpha-keto-beta-hydroxylacil reductoisomerase; Flags: Precursor gi|3452497|emb|CAA76854.1| ketol-acid reductoisomerase [Pisum sativum] | Back alignment and taxonomy information |
|---|
Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/396 (81%), Positives = 346/396 (87%), Gaps = 5/396 (1%)
Query: 18 SPSSETLK----GAFKHLNLAFFSSTAKSLRALKTTRGRGSALGAQMASETALKTPFLLD 73
S SS+TL +F NL+F + +S+RA ++ GSALGA S P LD
Sbjct: 13 SASSKTLAKPVAASFAPTNLSFSKLSPQSIRARRSIT-VGSALGATKVSAPPATHPVSLD 71
Query: 74 FETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDS 133
FETSVFKK+ ++LA +E+IVRGGRDLF LLPDAF GI QIGVIGWGSQGPAQAQNLRDS
Sbjct: 72 FETSVFKKERVNLAGHEEYIVRGGRDLFHLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDS 131
Query: 134 LAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD 193
L EAKSDIVVKVGLRKGS SF EAR AGF+EE GTLGDI+ETISGSDLVLLLISD+AQAD
Sbjct: 132 LVEAKSDIVVKVGLRKGSSSFNEAREAGFSEEKGTLGDIWETISGSDLVLLLISDSAQAD 191
Query: 194 NYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKE 253
NYEKIFS +KPNSILGLSHGFLLGHLQSIGLDFPKN VIAVCPKGMGPSVRRLYVQGKE
Sbjct: 192 NYEKIFSHLKPNSILGLSHGFLLGHLQSIGLDFPKNFSVIAVCPKGMGPSVRRLYVQGKE 251
Query: 254 INGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAV 313
INGAGINSSF VHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAV
Sbjct: 252 INGAGINSSFGVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAV 311
Query: 314 HGIVESLFRRFTENGMSEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKA 373
HGIVESLFRR+TENGMSEDLAYKNTVE ITG+ISK ISTQGMLAVYN+ S + KKEFEKA
Sbjct: 312 HGIVESLFRRYTENGMSEDLAYKNTVESITGVISKTISTQGMLAVYNALSEDGKKEFEKA 371
Query: 374 YSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFY 409
YSAS+YPCMEILYECYEDVA+GSEIRSVVLAGRRFY
Sbjct: 372 YSASFYPCMEILYECYEDVASGSEIRSVVLAGRRFY 407
|
Source: Pisum sativum Species: Pisum sativum Genus: Pisum Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297817174|ref|XP_002876470.1| ketol-acid reductoisomerase [Arabidopsis lyrata subsp. lyrata] gi|297322308|gb|EFH52729.1| ketol-acid reductoisomerase [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/357 (87%), Positives = 331/357 (92%)
Query: 53 GSALGAQMASETALKTPFLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGIN 112
GS+L A+M S +A+K P LDFETSVFKK+ +SLA +E+IVRGGRDLFK LPDAF GI
Sbjct: 64 GSSLSARMVSSSAVKAPVSLDFETSVFKKEKVSLAGYEEYIVRGGRDLFKHLPDAFKGIK 123
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
QIGVIGWGSQGPAQAQNLRDSL EAKSDIVVK+GLRKGSRSF EARAAGFTEE GTLGDI
Sbjct: 124 QIGVIGWGSQGPAQAQNLRDSLVEAKSDIVVKIGLRKGSRSFEEARAAGFTEETGTLGDI 183
Query: 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGV 232
+ETISGSDLVLLLISDAAQADNYEKIFS MKPNSILGLSHGFLLGHLQS GLDFPKNI V
Sbjct: 184 WETISGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSSGLDFPKNISV 243
Query: 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFAT 292
+AVCPKGMGPSVRRLYVQGKEINGAGIN+SFAVHQDVDGRA +VALGWSVALGSPFTFAT
Sbjct: 244 VAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQDVDGRAADVALGWSVALGSPFTFAT 303
Query: 293 TLEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVECITGIISKIIST 352
TLEQEY+SDIFGERGILLGAVHGIVESLFRR+TENGMSEDLAYKNTVECITG IS+ IST
Sbjct: 304 TLEQEYRSDIFGERGILLGAVHGIVESLFRRYTENGMSEDLAYKNTVECITGTISRTIST 363
Query: 353 QGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFY 409
QGMLAVYNS S E KK+FE AYSAS+YPCMEILYECYEDV +GSEIRSVVLAGRRFY
Sbjct: 364 QGMLAVYNSLSEEGKKDFETAYSASFYPCMEILYECYEDVQSGSEIRSVVLAGRRFY 420
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15231092|ref|NP_191420.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|145332887|ref|NP_001078309.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|334186086|ref|NP_001190127.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|12644387|sp|Q05758.2|ILV5_ARATH RecName: Full=Ketol-acid reductoisomerase, chloroplastic; AltName: Full=Acetohydroxy-acid reductoisomerase; AltName: Full=Alpha-keto-beta-hydroxylacil reductoisomerase; Flags: Precursor gi|11692838|gb|AAG40022.1|AF324671_1 AT3g58610 [Arabidopsis thaliana] gi|11993867|gb|AAG42917.1|AF329500_1 putative ketol-acid reductoisomerase [Arabidopsis thaliana] gi|402552|emb|CAA49506.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|6735378|emb|CAB68199.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|17063195|gb|AAL32973.1| AT3g58610/F14P22_200 [Arabidopsis thaliana] gi|17529224|gb|AAL38839.1| putative ketol-acid reductoisomerase [Arabidopsis thaliana] gi|20465493|gb|AAM20206.1| putative ketol-acid reductoisomerase [Arabidopsis thaliana] gi|23397061|gb|AAN31816.1| putative ketol-acid reductoisomerase [Arabidopsis thaliana] gi|23463055|gb|AAN33197.1| At3g58610/F14P22_200 [Arabidopsis thaliana] gi|332646283|gb|AEE79804.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|332646284|gb|AEE79805.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|332646285|gb|AEE79806.1| ketol-acid reductoisomerase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/357 (87%), Positives = 332/357 (92%)
Query: 53 GSALGAQMASETALKTPFLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGIN 112
GS+L A+M S +A+K P LDFETSVFKK+ +SLA +E+IVRGGRDLFK LPDAF GI
Sbjct: 61 GSSLAARMVSSSAVKAPVSLDFETSVFKKEKVSLAGYEEYIVRGGRDLFKHLPDAFKGIK 120
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
QIGVIGWGSQGPAQAQNLRDSL EAKSDIVVK+GLRKGSRSF EARAAGFTEE+GTLGDI
Sbjct: 121 QIGVIGWGSQGPAQAQNLRDSLVEAKSDIVVKIGLRKGSRSFEEARAAGFTEESGTLGDI 180
Query: 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGV 232
+ETI+GSDLVLLLISDAAQADNYEKIFS MKPNSILGLSHGFLLGHLQS GLDFPKNI V
Sbjct: 181 WETIAGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSSGLDFPKNISV 240
Query: 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFAT 292
+AVCPKGMGPSVRRLYVQGKEINGAGIN+SFAVHQDVDGRA +VALGWSVALGSPFTFAT
Sbjct: 241 VAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQDVDGRAADVALGWSVALGSPFTFAT 300
Query: 293 TLEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVECITGIISKIIST 352
TLEQEY+SDIFGERGILLGAVHGIVESLFRR+TENGMSEDLAYKNTVECITG IS+ IST
Sbjct: 301 TLEQEYRSDIFGERGILLGAVHGIVESLFRRYTENGMSEDLAYKNTVECITGTISRTIST 360
Query: 353 QGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFY 409
QGMLAVYNS S E KK+FE AYSAS+YPCMEILYECYEDV +GSEIRSVVLAGRRFY
Sbjct: 361 QGMLAVYNSLSEEGKKDFETAYSASFYPCMEILYECYEDVQSGSEIRSVVLAGRRFY 417
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449438145|ref|XP_004136850.1| PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Cucumis sativus] gi|449526744|ref|XP_004170373.1| PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 645 bits (1665), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/419 (78%), Positives = 362/419 (86%), Gaps = 14/419 (3%)
Query: 1 MVAGTLPSSPSIPKFSPSPSSETLKGAFKHLNLA-----FFSSTAKSLRALKTT-----R 50
M A T +PSI + S++TLK A LA F SS++ L ALK
Sbjct: 1 MAAATTHFAPSIS----ASSAKTLKHAAALHPLAPSSLSFLSSSSSGLNALKAVGISAAN 56
Query: 51 GRGSALGAQMASETALKTPFLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNG 110
G GSALGA+M S A+K LDF+TSVFKK+ ++LA DE+IVRGGRDLF LLP+AF G
Sbjct: 57 GIGSALGARMVSVPAIKPLISLDFDTSVFKKEKVNLAGHDEYIVRGGRDLFPLLPEAFKG 116
Query: 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170
I +IGVIGWGSQ PAQAQNLRDSLAEAKSDIVVK+GLRKGSRSFAEARA GF+EENGTLG
Sbjct: 117 IKKIGVIGWGSQAPAQAQNLRDSLAEAKSDIVVKIGLRKGSRSFAEARAVGFSEENGTLG 176
Query: 171 DIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNI 230
DIYETIS SDLV+LLISD+AQADNYEKIFS MKPNSILGLSHGFLLGHLQS GLDFPKNI
Sbjct: 177 DIYETISESDLVMLLISDSAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSSGLDFPKNI 236
Query: 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290
VIAVCPKGMGPSVRRLYVQGKE+NGAGINSSFAVHQDVDGRAT+VALGWS+ALGSPFTF
Sbjct: 237 SVIAVCPKGMGPSVRRLYVQGKEVNGAGINSSFAVHQDVDGRATDVALGWSIALGSPFTF 296
Query: 291 ATTLEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVECITGIISKII 350
ATTLEQEY+SDIFGERGILLGAVHGIVESLFRR+TENGM+E+LAYKNTVE ITGIIS+ I
Sbjct: 297 ATTLEQEYRSDIFGERGILLGAVHGIVESLFRRYTENGMAEELAYKNTVESITGIISRTI 356
Query: 351 STQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFY 409
ST+GMLAVYNSFS ++KKEFE+AYSASYYPCM+ILYECYEDVA+GSEIRSVVLAGRRFY
Sbjct: 357 STKGMLAVYNSFSPDEKKEFERAYSASYYPCMDILYECYEDVASGSEIRSVVLAGRRFY 415
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 417 | ||||||
| TAIR|locus:2076371 | 591 | AT3G58610 [Arabidopsis thalian | 0.906 | 0.639 | 0.811 | 9.6e-160 | |
| UNIPROTKB|Q01292 | 595 | AHRI "Ketol-acid reductoisomer | 0.908 | 0.636 | 0.769 | 2.4e-154 | |
| UNIPROTKB|Q65XK0 | 578 | LOC_Os05g49800 "Ketol-acid red | 0.858 | 0.619 | 0.802 | 2.7e-148 | |
| CGD|CAL0000685 | 400 | ILV5 [Candida albicans (taxid: | 0.762 | 0.795 | 0.326 | 3.2e-33 | |
| ASPGD|ASPL0000041782 | 400 | AN2526 [Emericella nidulans (t | 0.757 | 0.79 | 0.310 | 8.5e-33 | |
| POMBASE|SPBC56F2.12 | 404 | ilv5 "acetohydroxyacid reducto | 0.678 | 0.700 | 0.320 | 6e-32 | |
| UNIPROTKB|G4MW52 | 400 | MGG_15774 "Ketol-acid reductoi | 0.683 | 0.712 | 0.312 | 7.7e-32 | |
| SGD|S000004347 | 395 | ILV5 "Acetohydroxyacid reducto | 0.681 | 0.718 | 0.318 | 6.9e-31 | |
| TIGR_CMR|CHY_0519 | 330 | CHY_0519 "ketol-acid reductois | 0.498 | 0.630 | 0.334 | 8.4e-26 | |
| TIGR_CMR|GSU_1909 | 338 | GSU_1909 "ketol-acid reductois | 0.546 | 0.674 | 0.311 | 6.1e-23 |
| TAIR|locus:2076371 AT3G58610 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1556 (552.8 bits), Expect = 9.6e-160, P = 9.6e-160
Identities = 310/382 (81%), Positives = 335/382 (87%)
Query: 32 NLAFFSSTAKSLRALKTT-RGRG---SALGAQMASETALKTPFLLDFETSVFKKDAISLA 87
N+ F SS++KSLR+L T G G S+L A+M S +A+K P LDFETSVFKK+ +SLA
Sbjct: 36 NIGFLSSSSKSLRSLTATVAGNGATGSSLAARMVSSSAVKAPVSLDFETSVFKKEKVSLA 95
Query: 88 NRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGL 147
+E+IVRGGRDLFK LPDAF GI QIGVIGWGSQGPAQAQNLRDSL EAKSDIVVK+GL
Sbjct: 96 GYEEYIVRGGRDLFKHLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLVEAKSDIVVKIGL 155
Query: 148 RKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSI 207
RKGSRSF EARAAGFTEE+GTLGDI+ETI+GSDLVLLLISDAAQADNYEKIFS MKPNSI
Sbjct: 156 RKGSRSFEEARAAGFTEESGTLGDIWETIAGSDLVLLLISDAAQADNYEKIFSHMKPNSI 215
Query: 208 XXXXXXXXXXXXQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267
QS GLDFPKNI V+AVCPKGMGPSVRRLYVQGKEINGAGIN+SFAVHQ
Sbjct: 216 LGLSHGFLLGHLQSSGLDFPKNISVVAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQ 275
Query: 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESLFRRFTEN 327
DVDGRA +VALGWSVALGSPFTFATTLEQEY+SDIFGERGILLGAVHGIVESLFRR+TEN
Sbjct: 276 DVDGRAADVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRYTEN 335
Query: 328 GMSEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYE 387
GMSEDLAYKNTVECITG IS+ ISTQGMLAVYNS S E KK+FE AYSAS+YPCMEILYE
Sbjct: 336 GMSEDLAYKNTVECITGTISRTISTQGMLAVYNSLSEEGKKDFETAYSASFYPCMEILYE 395
Query: 388 CYEDVAAGSEIRSVVLAGRRFY 409
CYEDV +GSEIRSVVLAGRRFY
Sbjct: 396 CYEDVQSGSEIRSVVLAGRRFY 417
|
|
| UNIPROTKB|Q01292 AHRI "Ketol-acid reductoisomerase, chloroplastic" [Spinacia oleracea (taxid:3562)] | Back alignment and assigned GO terms |
|---|
Score = 1505 (534.8 bits), Expect = 2.4e-154, P = 2.4e-154
Identities = 300/390 (76%), Positives = 333/390 (85%)
Query: 31 LNLAFF--SSTAKSLRALKTTR-------GRGSALGAQMASETALKTPFL--LDFETSVF 79
LNL F SST K+ R+LK R G GSAL AQM S ++ TP DF++SVF
Sbjct: 34 LNLGFLGSSSTIKACRSLKAARVLPSGANGGGSALSAQMVSAPSINTPSATTFDFDSSVF 93
Query: 80 KKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKS 139
KK+ ++L+ DE+IVRGGR+LF LLPDAF GI QIGVIGWGSQ PAQAQNL+DSL EAKS
Sbjct: 94 KKEKVTLSGHDEYIVRGGRNLFPLLPDAFKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKS 153
Query: 140 DIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIF 199
D+VVK+GLRKGS SFAEARAAGF+EENGTLGD++ETISGSDLVLLLISD+AQADNYEK+F
Sbjct: 154 DVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLISDSAQADNYEKVF 213
Query: 200 SCMKPNSIXXXXXXXXXXXXQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259
S MKPNSI QS+G DFPKNI VIAVCPKGMGPSVRRLYVQGKE+NGAGI
Sbjct: 214 SHMKPNSILGLSHGFLLGHLQSLGQDFPKNISVIAVCPKGMGPSVRRLYVQGKEVNGAGI 273
Query: 260 NSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVES 319
NSSFAVHQDVDGRAT+VALGWS+ALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVE
Sbjct: 274 NSSFAVHQDVDGRATDVALGWSIALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVEC 333
Query: 320 LFRRFTENGMSEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYY 379
LFRR+TE+GMSEDLAYKNTVECITG+ISK IST+GMLA+YNS S E KK+F+ AYSASYY
Sbjct: 334 LFRRYTESGMSEDLAYKNTVECITGVISKTISTKGMLALYNSLSEEGKKDFQAAYSASYY 393
Query: 380 PCMEILYECYEDVAAGSEIRSVVLAGRRFY 409
P M+ILYECYEDVA+GSEIRSVVLAGRRFY
Sbjct: 394 PSMDILYECYEDVASGSEIRSVVLAGRRFY 423
|
|
| UNIPROTKB|Q65XK0 LOC_Os05g49800 "Ketol-acid reductoisomerase, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1448 (514.8 bits), Expect = 2.7e-148, P = 2.7e-148
Identities = 288/359 (80%), Positives = 314/359 (87%)
Query: 52 RGSALGAQMASETALKTPF-LLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNG 110
R A+ A +A+ A+ LDF+TSVF K+ +SLA +E+IVRGGR+LF LLP+AF G
Sbjct: 47 RRRAVTAMVAAPPAVGAAMPSLDFDTSVFNKEKVSLAGHEEYIVRGGRNLFPLLPEAFKG 106
Query: 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170
I QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK+GLRKGS+SF EARAAGFTEE+GTLG
Sbjct: 107 IKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLG 166
Query: 171 DIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNI 230
DI+ET+SGSDLVLLLISDAAQADNYEKIFS MKPNSI QS GLDFPKNI
Sbjct: 167 DIWETVSGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSAGLDFPKNI 226
Query: 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290
VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRAT+VALGWSVALGSPFTF
Sbjct: 227 SVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTF 286
Query: 291 ATTLEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVECITGIISKII 350
ATTLEQEYKSDIFGERGILLGAVHGIVE+LFRR+TE GM E++AYKNTVE ITGIISK I
Sbjct: 287 ATTLEQEYKSDIFGERGILLGAVHGIVEALFRRYTEQGMDEEMAYKNTVEGITGIISKTI 346
Query: 351 STQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFY 409
S +GML VYNS + E KKEF KAYSAS+YPCM+ILYECYEDVA+GSEIRSVVLAGRRFY
Sbjct: 347 SKKGMLEVYNSLTEEGKKEFNKAYSASFYPCMDILYECYEDVASGSEIRSVVLAGRRFY 405
|
|
| CGD|CAL0000685 ILV5 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
Identities = 110/337 (32%), Positives = 166/337 (49%)
Query: 76 TSVFKKDAISLANRDEFIVRGGRDLFK-LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSL 134
TS+ I+ +E +V D K L D F + +IG+GSQG Q NLRD+
Sbjct: 49 TSIRGVKTINFGGTEE-VVHERADWPKERLLDYFKN-DTFALIGYGSQGYGQGLNLRDN- 105
Query: 135 AEAKSDIVVKVGLRKGSRSFAEARAAGFTE-ENGTLGDIYETISGSDLVLLLISDAAQAD 193
+ V +G+RKGS S+ A G+ EN L ++ E IS +++ L+SDAAQ++
Sbjct: 106 -----GLNVIIGVRKGS-SWEAAVEDGWVPGEN--LFEVDEAISRGTIIMDLLSDAAQSE 157
Query: 194 NYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKE 253
+ I + ++ P NI VI PKG G +VR L+ +G+
Sbjct: 158 TWFHIKPQLTEGKTLYFSHGFSPVFKDLTHVEPPSNIDVILAAPKGSGRTVRSLFKEGR- 216
Query: 254 INGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAV 313
GINSS+AV DV G+A A+ ++A+GS + + TT E+E SD++GERG L+G +
Sbjct: 217 ----GINSSYAVWNDVTGKAEEKAIAMAIAIGSGYVYKTTFEREVNSDLYGERGCLMGGI 272
Query: 314 HGIVESLFRRFTENGMSEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKA 373
HG+ + + ENG + A+ TVE T + +I GM +Y++ S ++
Sbjct: 273 HGMFLAQYEVLRENGHTPSEAFNETVEEATQSLYPLIGKYGMDYMYDACSTTARRGALDW 332
Query: 374 YSASYYPCMEILYECYEDVAAGSEI-RSVVLAGRRFY 409
Y + E YE V GSE RS+ R Y
Sbjct: 333 YPRFKDALKPVFEELYESVKNGSETKRSLEFNSRSDY 369
|
|
| ASPGD|ASPL0000041782 AN2526 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
Identities = 103/332 (31%), Positives = 164/332 (49%)
Query: 84 ISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV 143
IS A+ E + + L + F + + +IG+GSQG Q NLRD + V
Sbjct: 55 ISFADSQETVYERADWPREKLQEYFKN-DTLALIGYGSQGHGQGLNLRDQ------GLNV 107
Query: 144 KVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMK 203
VG+RK S+ EA G+ L ++ E + +V+ L+SDAAQ++ + + +
Sbjct: 108 IVGVRKDGASWKEAIQDGWVPGKN-LFEVTEAVQKGTIVMNLLSDAAQSETWPTLKPLIT 166
Query: 204 PNSIXXXXXXXXXXXXQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263
+ +D P ++ VI V PKG G +VR L+ +G+ GINSS
Sbjct: 167 KGKTLYFSHGFSPVFKEKTKVDVPSDVDVILVAPKGSGRTVRTLFREGR-----GINSSI 221
Query: 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESLFRR 323
AV QDV G A A+ VA+GS + + TT E+E SD++GERG L+G +HG+ + +
Sbjct: 222 AVFQDVTGNAKEKAIAMGVAVGSGYLYETTFEKEVYSDLYGERGCLMGGIHGMFLAQYEV 281
Query: 324 FTENGMSEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCME 383
E G S A+ TVE T + +I GM +Y + S ++ +S+ + ++
Sbjct: 282 LRERGHSPSEAFNETVEEATQSLYPLIGANGMDWMYAACSTTARRGAID-WSSRFKDNLK 340
Query: 384 ILY-ECYEDVAAGSEI-RSVVLAGRRFYVSSY 413
L+ E Y+ V G+E RS+ ++ Y Y
Sbjct: 341 PLFNELYDSVRDGTETQRSLDYNSQKDYREKY 372
|
|
| POMBASE|SPBC56F2.12 ilv5 "acetohydroxyacid reductoisomerase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
Identities = 95/296 (32%), Positives = 150/296 (50%)
Query: 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163
L D F + + +IG+GSQG Q N RD + V VG+RK S+ +A G+
Sbjct: 78 LVDYFKN-DTLAIIGYGSQGHGQGLNARDQ------GLNVIVGVRKDGASWKQAIEDGWV 130
Query: 164 EENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIG 223
TL + E I +++ L+SDAAQ + + KI +
Sbjct: 131 PGK-TLFPVEEAIKKGSIIMNLLSDAAQTETWPKIAPLITKGKTLYFSHGFSVIFKDQTK 189
Query: 224 LDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA 283
+ PK++ VI V PKG G +VR L+ +G+ GINSSFAV+QDV G+A A+G +VA
Sbjct: 190 IHPPKDVDVILVAPKGSGRTVRTLFKEGR-----GINSSFAVYQDVTGKAQEKAIGLAVA 244
Query: 284 LGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVECIT 343
+GS F + TT ++E SD+ GERG L+G ++G+ + ++ E G S A+ TVE T
Sbjct: 245 VGSGFIYQTTFKKEVISDLVGERGCLMGGINGLFLAQYQVLRERGHSPAEAFNETVEEAT 304
Query: 344 GIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIR 399
+ +I G+ ++ + S ++ ++L E Y++V G+E +
Sbjct: 305 QSLYPLIGKYGLDYMFAACSTTARRGAIDWTPRFLEANKKVLNELYDNVENGNEAK 360
|
|
| UNIPROTKB|G4MW52 MGG_15774 "Ketol-acid reductoisomerase" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
Identities = 95/304 (31%), Positives = 153/304 (50%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
+ +IG+GSQG Q NLRD+ + V +G+RK +S+ +A G+ L ++
Sbjct: 84 LALIGYGSQGHGQGLNLRDN------GLNVIIGVRKDGKSWKDAVQDGWVPGKN-LFEVD 136
Query: 174 ETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNIGVI 233
E IS +++ L+SDAAQ++ + + + ++ P ++ VI
Sbjct: 137 EAISRGTVIMNLLSDAAQSETWPALKPQITKGKTLYFSHGFSPVFKDLTKVEVPTDVDVI 196
Query: 234 AVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATT 293
PKG G +VR L+ +G+ GINSSFAV+QDV G A A+ VA+GS + + TT
Sbjct: 197 LCAPKGSGRTVRSLFREGR-----GINSSFAVYQDVTGEAEEKAIALGVAIGSGYLYKTT 251
Query: 294 LEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVECITGIISKIISTQ 353
E+E SD++GERG L+G +HG+ + + E G S A+ TVE T + +I
Sbjct: 252 FEKEVYSDLYGERGCLMGGIHGMFLAQYEVLRERGHSPSEAFNETVEEATQSLYPLIGAN 311
Query: 354 GMLAVYNSFSGEDKK---EFEKAYSASYYPCMEILYECYEDVAAGSEI-RSVVLAGRRFY 409
GM +Y + S ++ ++ + + P LY+ +D GSE RS+ + Y
Sbjct: 312 GMDWMYEACSTTARRGAIDWSPRFKDALKPVFNQLYDSVKD---GSETQRSLDYNSQPDY 368
Query: 410 VSSY 413
Y
Sbjct: 369 REKY 372
|
|
| SGD|S000004347 ILV5 "Acetohydroxyacid reductoisomerase and mtDNA binding protein" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 95/298 (31%), Positives = 146/298 (48%)
Query: 102 KLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG 161
KLL D F + +IG+GSQG Q NLRD+ + V +G+RK S+ A G
Sbjct: 70 KLL-DYFKN-DTFALIGYGSQGYGQGLNLRDN------GLNVIIGVRKDGASWKAAIEDG 121
Query: 162 FTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQS 221
+ L + + I V+ L+SDAAQ++ + I +
Sbjct: 122 WVPGKN-LFTVEDAIKRGSYVMNLLSDAAQSETWPAIKPLLTKGKTLYFSHGFSPVFKDL 180
Query: 222 IGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWS 281
++ PK++ VI V PKG G +VR L+ +G+ GINSS+AV DV G+A A +
Sbjct: 181 THVEPPKDLDVILVAPKGSGRTVRSLFKEGR-----GINSSYAVWNDVTGKAHEKAQALA 235
Query: 282 VALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVEC 341
VA+GS + + TT E+E SD++GERG L+G +HG+ + + ENG S A+ TVE
Sbjct: 236 VAIGSGYVYQTTFEREVNSDLYGERGCLMGGIHGMFLAQYDVLRENGHSPSEAFNETVEE 295
Query: 342 ITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIR 399
T + +I GM +Y++ S ++ Y + + YE G+E +
Sbjct: 296 ATQSLYPLIGKYGMDYMYDACSTTARRGALDWYPIFKNALKPVFQDLYESTKNGTETK 353
|
|
| TIGR_CMR|CHY_0519 CHY_0519 "ketol-acid reductoisomerase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
Identities = 78/233 (33%), Positives = 124/233 (53%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
+I +IG+GSQG AQAQNL+DS + V VGL K S+S +A A GFT + +
Sbjct: 19 KIAIIGYGSQGHAQAQNLKDS------GLNVVVGLHKKSKSREKAEADGFT-----VMKV 67
Query: 173 YETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNIG 231
E +D++ +L+ D Q + Y +KI +KP Q + P ++
Sbjct: 68 DEAAQWADIIQILVPDQIQGELYRDKIEEHLKPGKALMFSHGFNIHYGQIVP---PPDVD 124
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT-- 289
V V PK G VRR+Y++GK G+ AV+QD G+A ++AL ++ +G
Sbjct: 125 VFLVAPKSPGHLVRRMYLEGK-----GVPGLIAVYQDATGKAKDLALAYAKGIGCTRAGV 179
Query: 290 FATTLEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVECI 342
F TT ++E ++D+FGE+ +L G V ++++ F E G + ++AY EC+
Sbjct: 180 FETTFKEETETDLFGEQAVLCGGVTHLIKAGFETLVEAGYAPEMAY---FECL 229
|
|
| TIGR_CMR|GSU_1909 GSU_1909 "ketol-acid reductoisomerase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
Identities = 80/257 (31%), Positives = 129/257 (50%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
++ VIG+GSQG A A NL+DS D+VV GL+ S S A+A AG T +
Sbjct: 18 RVAVIGYGSQGHAHANNLKDSGV----DVVV--GLKADSSSVAKATGAGLT-----VLPT 66
Query: 173 YETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPK-NI 230
+ + G+D+V++L+ D Q D Y E++ +K + Q P+ +I
Sbjct: 67 ADAVKGADVVMILLPDEIQGDVYREEVGPYLKQGAYLAFGHGFNIHFGQIT----PRPDI 122
Query: 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT- 289
VI PKG G VR Y +G G+ A+H D G + +VAL ++ A+G
Sbjct: 123 NVIMAAPKGPGHLVRHEYTRG-----GGVPCLIAIHHDPSGNSRDVALAYASAIGGGRAG 177
Query: 290 -FATTLEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVECI--TGII 346
T+ ++E ++D+FGE+ +L G + ++++ F E G S ++AY EC+ T +I
Sbjct: 178 IIETSFKEETETDLFGEQAVLCGGISALIQAGFETLVEAGYSPEMAY---FECLHETKLI 234
Query: 347 SKIISTQGMLAVYNSFS 363
+I G+ + S S
Sbjct: 235 VDLIYEGGIANMRYSIS 251
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q05758 | ILV5_ARATH | 1, ., 1, ., 1, ., 8, 6 | 0.8711 | 0.8561 | 0.6040 | yes | no |
| Q65XK0 | ILV5_ORYSJ | 1, ., 1, ., 1, ., 8, 6 | 0.8727 | 0.8105 | 0.5847 | yes | no |
| Q01292 | ILV5_SPIOL | 1, ., 1, ., 1, ., 8, 6 | 0.7788 | 0.9280 | 0.6504 | N/A | no |
| O82043 | ILV5_PEA | 1, ., 1, ., 1, ., 8, 6 | 0.8156 | 0.9376 | 0.6729 | N/A | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 417 | |||
| COG0059 | 338 | COG0059, IlvC, Ketol-acid reductoisomerase [Amino | 5e-52 | |
| TIGR00465 | 314 | TIGR00465, ilvC, ketol-acid reductoisomerase | 7e-52 | |
| PRK05479 | 330 | PRK05479, PRK05479, ketol-acid reductoisomerase; P | 4e-43 | |
| pfam07991 | 165 | pfam07991, IlvN, Acetohydroxy acid isomeroreductas | 6e-41 | |
| PRK13403 | 335 | PRK13403, PRK13403, ketol-acid reductoisomerase; P | 1e-28 | |
| PRK05225 | 487 | PRK05225, PRK05225, ketol-acid reductoisomerase; V | 1e-18 | |
| pfam01450 | 146 | pfam01450, IlvC, Acetohydroxy acid isomeroreductas | 3e-11 |
| >gnl|CDD|223137 COG0059, IlvC, Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 177 bits (450), Expect = 5e-52
Identities = 84/236 (35%), Positives = 130/236 (55%), Gaps = 32/236 (13%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
++ +IG+GSQG AQA NLRDS V +GLRKGS S+ +A+ GF + +
Sbjct: 20 KVAIIGYGSQGHAQALNLRDSGLN------VIIGLRKGSSSWKKAKEDGFK-----VYTV 68
Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSI---GLDFPK 228
E +D+V++L+ D Q + YEK I +K + LG +HGF +I + PK
Sbjct: 69 EEAAKRADVVMILLPDEQQKEVYEKEIAPNLKEGAALGFAHGF------NIHFGLIVPPK 122
Query: 229 NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF 288
++ VI V PKG G VRR Y +G G+ + AVHQD G+A ++AL ++ +G
Sbjct: 123 DVDVIMVAPKGPGHLVRREYKEGF-----GVPALIAVHQDASGKALDIALAYAKGIGG-- 175
Query: 289 TFA----TTLEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVE 340
T A TT ++E ++D+FGE+ +L G + ++++ F E G +LAY +
Sbjct: 176 TRAGVIETTFKEETETDLFGEQAVLCGGLQALIKAGFETLVEAGYQPELAYFECLH 231
|
Length = 338 |
| >gnl|CDD|129557 TIGR00465, ilvC, ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Score = 176 bits (447), Expect = 7e-52
Identities = 84/231 (36%), Positives = 124/231 (53%), Gaps = 22/231 (9%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
+ +IG+GSQG AQA NLRDS + V VGLRKG S+ +A GF +G +
Sbjct: 5 TVAIIGYGSQGHAQALNLRDS------GLNVIVGLRKGGASWKKATEDGFK-----VGTV 53
Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIG 231
E I +DL++ L+ D Q + YE I +K LG SHGF ++ + + PK++
Sbjct: 54 EEAIPQADLIMNLLPDEVQHEVYEAEIQPLLKEGKTLGFSHGF---NIHFVQIVPPKDVD 110
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFT 289
V+ V PKG G VR Y +G G+ + AV QD G A +AL ++ A+G
Sbjct: 111 VVMVAPKGPGTLVREEYKEGF-----GVPTLIAVEQDPTGEAMAIALAYAKAIGGGRAGV 165
Query: 290 FATTLEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVE 340
TT ++E +SD+FGE+ +L G + ++++ F E G +LAY TV
Sbjct: 166 LETTFKEETESDLFGEQAVLCGGLTALIKAGFDTLVEAGYQPELAYFETVH 216
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway [Amino acid biosynthesis, Pyruvate family]. Length = 314 |
| >gnl|CDD|235491 PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Score = 153 bits (389), Expect = 4e-43
Identities = 83/238 (34%), Positives = 130/238 (54%), Gaps = 35/238 (14%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
++ +IG+GSQG A A NLRDS + V VGLR+GS+S+ +A A GF + +
Sbjct: 19 KVAIIGYGSQGHAHALNLRDSGVD------VVVGLREGSKSWKKAEADGF-----EVLTV 67
Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSI--GL-DFPK 228
E +D++++L+ D QA+ YE+ I +K + L +HGF +I G P
Sbjct: 68 AEAAKWADVIMILLPDEVQAEVYEEEIEPNLKEGAALAFAHGF------NIHFGQIVPPA 121
Query: 229 NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF 288
++ VI V PKG G VRR Y +G G+ AVHQD G A ++AL ++ +G
Sbjct: 122 DVDVIMVAPKGPGHLVRREYEEGG-----GVPCLIAVHQDASGNAKDLALAYAKGIGG-- 174
Query: 289 TFA----TTLEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVECI 342
T A TT ++E ++D+FGE+ +L G + ++++ F E G ++AY EC+
Sbjct: 175 TRAGVIETTFKEETETDLFGEQAVLCGGLTELIKAGFETLVEAGYQPEMAY---FECL 229
|
Length = 330 |
| >gnl|CDD|116601 pfam07991, IlvN, Acetohydroxy acid isomeroreductase, catalytic domain | Back alignment and domain information |
|---|
Score = 142 bits (361), Expect = 6e-41
Identities = 67/175 (38%), Positives = 99/175 (56%), Gaps = 20/175 (11%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
+I VIG+GSQG A A NLRDS V VGLR GS+S+ +A+ GF + +
Sbjct: 6 KIAVIGYGSQGHAHALNLRDSGVN------VIVGLRPGSKSWEKAKKDGF-----EVYTV 54
Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIG 231
E + +D+V++L+ D QA+ YEK I +K + L +HGF ++ + PK++
Sbjct: 55 AEAVKKADVVMILLPDEVQAEVYEKEIAPNLKEGAALAFAHGF---NIHFGQIKPPKDVD 111
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS 286
VI V PKG G VRR Y +G G+ + AVHQD G+A ++AL ++ +G
Sbjct: 112 VIMVAPKGPGHLVRREYEEGG-----GVPALIAVHQDASGKAKDLALAYAKGIGG 161
|
Acetohydroxy acid isomeroreductase catalyzes the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine. Length = 165 |
| >gnl|CDD|106361 PRK13403, PRK13403, ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 1e-28
Identities = 89/262 (33%), Positives = 139/262 (53%), Gaps = 30/262 (11%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
+ VIG+GSQG AQAQNLRDS E V VG+R G +SF A+A GF + +
Sbjct: 19 VAVIGYGSQGHAQAQNLRDSGVE------VVVGVRPG-KSFEVAKADGFE-----VMSVS 66
Query: 174 ETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGV 232
E + + +V +L+ D QA Y+ ++ ++ +L SHGF + Q ++ P + V
Sbjct: 67 EAVRTAQVVQMLLPDEQQAHVYKAEVEENLREGQMLLFSHGFNIHFGQ---INPPSYVDV 123
Query: 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALG--SPFTF 290
V PK G VRR++ +G G+ + AVHQD G A +VAL ++ +G
Sbjct: 124 AMVAPKSPGHLVRRVFQEGN-----GVPALVAVHQDATGTALHVALAYAKGVGCTRAGVI 178
Query: 291 ATTLEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVECI--TGIISK 348
TT ++E ++D+FGE+ +L G V +V++ F TE G ++AY EC+ +I
Sbjct: 179 ETTFQEETETDLFGEQAVLCGGVTALVKAGFETLTEGGYRPEIAY---FECLHELKLIVD 235
Query: 349 IISTQGMLAVYNSFSGEDKKEF 370
++ G+ + +S S D EF
Sbjct: 236 LMYEGGLTNMRHSIS--DTAEF 255
|
Length = 335 |
| >gnl|CDD|235368 PRK05225, PRK05225, ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 1e-18
Identities = 70/206 (33%), Positives = 97/206 (47%), Gaps = 26/206 (12%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEENGTLGD 171
I ++G G+QG Q N+RDS + + LRK + AE RA+ TE +G
Sbjct: 39 IVIVGCGAQGLNQGLNMRDS------GLDISYALRKEA--IAEKRASWRKATENGFKVGT 90
Query: 172 IYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIG 231
E I +DLV+ L D +D + MK + LG SHGF ++ +G K+I
Sbjct: 91 YEELIPQADLVINLTPDKQHSDVVRAVQPLMKQGAALGYSHGF---NIVEVGEQIRKDIT 147
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD--GRATNVALGWSVALGSPFT 289
V+ V PK G VR Y + G G+ + AVH + D G +A W+ A G
Sbjct: 148 VVMVAPKCPGTEVREEYKR-----GFGVPTLIAVHPENDPKGEGMAIAKAWAAATGG--H 200
Query: 290 FATTLEQ----EYKSDIFGERGILLG 311
A LE E KSD+ GE+ IL G
Sbjct: 201 RAGVLESSFVAEVKSDLMGEQTILCG 226
|
Length = 487 |
| >gnl|CDD|216510 pfam01450, IlvC, Acetohydroxy acid isomeroreductase, catalytic domain | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 3e-11
Identities = 28/117 (23%), Positives = 56/117 (47%), Gaps = 12/117 (10%)
Query: 294 LEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVECITGIISKIISTQ 353
E+E +SD+FGE+ +L G + G++++ F E G S ++AY T+ +I +I
Sbjct: 1 FEEETESDLFGEQAVLCGGLQGLIKAGFETLVEAGYSPEIAYFETLH-ELKLIVDLIYEG 59
Query: 354 GMLAVYNSFSGEDKKEF------EKAYSASYYPCMEILYECYEDVAAGSEIRSVVLA 404
G+ + +S S E+ + + + M+ E +D+ G+ + +L
Sbjct: 60 GLSGMRDSIS--TTAEYGAYLWGPRIITEATKILMK---EILKDIQNGTFAKEWLLE 111
|
Acetohydroxy acid isomeroreductase catalyzes the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine. Length = 146 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 417 | |||
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 100.0 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 100.0 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 100.0 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 100.0 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 100.0 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 100.0 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 100.0 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 100.0 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 100.0 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 99.97 | |
| KOG3124 | 267 | consensus Pyrroline-5-carboxylate reductase [Amino | 99.97 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 99.97 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 99.96 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 99.96 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 99.96 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 99.95 | |
| PF01450 | 145 | IlvC: Acetohydroxy acid isomeroreductase, catalyti | 99.94 | |
| TIGR00112 | 245 | proC pyrroline-5-carboxylate reductase. This enzym | 99.94 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 99.93 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 99.85 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 99.79 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 99.76 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 99.75 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 99.74 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 99.73 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 99.71 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 99.71 | |
| PLN02256 | 304 | arogenate dehydrogenase | 99.66 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 99.65 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.63 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 99.61 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 99.58 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 99.58 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.58 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 99.58 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 99.56 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.54 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 99.52 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 99.5 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 99.49 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.48 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 99.46 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 99.44 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 99.42 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 99.4 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 99.39 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.39 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.39 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 99.37 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.35 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.35 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.34 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.33 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 99.33 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 99.32 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 99.29 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 99.29 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 99.28 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.28 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.27 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 99.25 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.25 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 99.24 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.23 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 99.17 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 99.15 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 99.14 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 99.11 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 99.11 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 99.1 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 99.09 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 99.09 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 99.08 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 99.07 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.06 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.06 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 99.05 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 99.05 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 99.05 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 99.03 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 99.03 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.03 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 99.01 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 99.0 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 99.0 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 98.98 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 98.97 | |
| PF14748 | 107 | P5CR_dimer: Pyrroline-5-carboxylate reductase dime | 98.97 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 98.97 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 98.96 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 98.96 | |
| COG4007 | 340 | Predicted dehydrogenase related to H2-forming N5,N | 98.95 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 98.95 | |
| PLN02928 | 347 | oxidoreductase family protein | 98.93 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 98.93 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 98.93 | |
| KOG2380 | 480 | consensus Prephenate dehydrogenase (NADP+) [Amino | 98.92 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 98.91 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 98.89 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 98.89 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 98.89 | |
| KOG0069 | 336 | consensus Glyoxylate/hydroxypyruvate reductase (D- | 98.83 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 98.8 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 98.8 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 98.76 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 98.74 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 98.73 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 98.72 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 98.71 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 98.71 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 98.67 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 98.66 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 98.64 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 98.62 | |
| PRK11861 | 673 | bifunctional prephenate dehydrogenase/3-phosphoshi | 98.62 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 98.62 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 98.62 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 98.61 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 98.61 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 98.59 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 98.59 | |
| KOG0068 | 406 | consensus D-3-phosphoglycerate dehydrogenase, D-is | 98.5 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 98.49 | |
| TIGR01723 | 340 | hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr | 98.49 | |
| PRK00961 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 98.48 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 98.45 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 98.44 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 98.44 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 98.43 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 98.32 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.31 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 98.3 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 98.3 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 98.24 | |
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 98.24 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 98.23 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 98.19 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 98.18 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.17 | |
| PLN02494 | 477 | adenosylhomocysteinase | 98.16 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 98.16 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 98.16 | |
| COG4074 | 343 | Mth H2-forming N5,N10-methylenetetrahydromethanopt | 98.12 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 98.12 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 98.11 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 98.09 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 98.07 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 98.01 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.01 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 97.96 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 97.95 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 97.94 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.87 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 97.85 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 97.77 | |
| COG5495 | 289 | Uncharacterized conserved protein [Function unknow | 97.77 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 97.76 | |
| KOG2304 | 298 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 97.76 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 97.69 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 97.68 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 97.68 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 97.64 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 97.63 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 97.57 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 97.57 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 97.54 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 97.53 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 97.5 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 97.5 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 97.48 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 97.48 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 97.46 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 97.46 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 97.45 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 97.45 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 97.42 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 97.41 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 97.4 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 97.4 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 97.4 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 97.4 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.39 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 97.39 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 97.38 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 97.38 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 97.37 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 97.27 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 97.25 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 97.24 | |
| KOG2711 | 372 | consensus Glycerol-3-phosphate dehydrogenase/dihyd | 97.24 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 97.22 | |
| COG0499 | 420 | SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me | 97.2 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 97.19 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.19 | |
| KOG2653 | 487 | consensus 6-phosphogluconate dehydrogenase [Carboh | 97.17 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 97.15 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.15 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 97.13 | |
| TIGR00745 | 293 | apbA_panE 2-dehydropantoate 2-reductase. This mode | 97.13 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 97.12 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 97.11 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 97.11 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 97.09 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 97.08 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 97.05 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 97.03 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 97.0 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 97.0 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.0 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 96.97 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 96.96 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 96.96 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 96.95 | |
| KOG1370 | 434 | consensus S-adenosylhomocysteine hydrolase [Coenzy | 96.95 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 96.94 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 96.92 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 96.92 | |
| PF02629 | 96 | CoA_binding: CoA binding domain; InterPro: IPR0037 | 96.91 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.86 | |
| PRK11579 | 346 | putative oxidoreductase; Provisional | 96.84 | |
| PRK10206 | 344 | putative oxidoreductase; Provisional | 96.8 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 96.72 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 96.71 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.7 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 96.7 | |
| KOG2305 | 313 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 96.66 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 96.65 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 96.63 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 96.55 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 96.5 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 96.49 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 96.49 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 96.49 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 96.44 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 96.39 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 96.38 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 96.37 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 96.37 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 96.35 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 96.34 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 96.33 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 96.33 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 96.29 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 96.29 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 96.28 | |
| PTZ00187 | 317 | succinyl-CoA synthetase alpha subunit; Provisional | 96.28 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 96.28 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 96.19 | |
| PRK05678 | 291 | succinyl-CoA synthetase subunit alpha; Validated | 96.18 | |
| COG2344 | 211 | AT-rich DNA-binding protein [General function pred | 96.16 | |
| PRK05472 | 213 | redox-sensing transcriptional repressor Rex; Provi | 96.15 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 96.09 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 96.08 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.05 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 96.01 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.01 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 95.99 | |
| TIGR01019 | 286 | sucCoAalpha succinyl-CoA synthetase, alpha subunit | 95.98 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 95.94 | |
| TIGR01546 | 333 | GAPDH-II_archae glyceraldehyde-3-phosphate dehydro | 95.92 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 95.88 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 95.88 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 95.85 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 95.81 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.79 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.74 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 95.71 | |
| PLN02602 | 350 | lactate dehydrogenase | 95.68 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 95.67 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 95.64 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.64 | |
| TIGR01761 | 343 | thiaz-red thiazolinyl imide reductase. This reduct | 95.59 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 95.59 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.55 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 95.52 | |
| PRK14186 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.51 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 95.5 | |
| PF00185 | 158 | OTCace: Aspartate/ornithine carbamoyltransferase, | 95.48 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.42 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 95.41 | |
| PLN02516 | 299 | methylenetetrahydrofolate dehydrogenase (NADP+) | 95.41 | |
| PRK14170 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.41 | |
| PF03720 | 106 | UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen | 95.4 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.39 | |
| PRK14169 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.38 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 95.37 | |
| PRK00421 | 461 | murC UDP-N-acetylmuramate--L-alanine ligase; Provi | 95.32 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 95.27 | |
| COG0190 | 283 | FolD 5,10-methylene-tetrahydrofolate dehydrogenase | 95.25 | |
| PRK14171 | 288 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.23 | |
| PRK00676 | 338 | hemA glutamyl-tRNA reductase; Validated | 95.21 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.19 | |
| PRK14166 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.16 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.15 | |
| TIGR00670 | 301 | asp_carb_tr aspartate carbamoyltransferase. Ornith | 95.07 | |
| PRK14187 | 294 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.06 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 95.06 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.03 | |
| KOG2741 | 351 | consensus Dimeric dihydrodiol dehydrogenase [Carbo | 94.98 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 94.94 | |
| PLN02616 | 364 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 94.92 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 94.92 | |
| PRK06270 | 341 | homoserine dehydrogenase; Provisional | 94.92 | |
| PRK14182 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.9 | |
| PLN02897 | 345 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 94.89 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.86 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.84 | |
| PRK14193 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.79 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 94.76 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.76 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 94.69 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 94.62 | |
| PRK14174 | 295 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.61 | |
| PF10728 | 132 | DUF2520: Domain of unknown function (DUF2520); Int | 94.6 | |
| PRK15076 | 431 | alpha-galactosidase; Provisional | 94.56 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 94.51 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 94.49 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 94.47 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 94.43 | |
| PRK01390 | 460 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.37 | |
| PRK14185 | 293 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.35 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 94.35 | |
| PRK14184 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.25 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 94.24 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 94.22 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 94.17 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 94.16 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 94.16 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 94.1 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 94.08 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 94.07 | |
| COG1648 | 210 | CysG Siroheme synthase (precorrin-2 oxidase/ferroc | 94.04 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 94.04 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 94.01 | |
| PF10100 | 429 | DUF2338: Uncharacterized protein conserved in bact | 93.98 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 93.91 | |
| PF04016 | 147 | DUF364: Domain of unknown function (DUF364); Inter | 93.89 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.89 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 93.86 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 93.85 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 93.79 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 93.78 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 93.71 | |
| PLN00125 | 300 | Succinyl-CoA ligase [GDP-forming] subunit alpha | 93.65 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 93.61 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 93.59 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.54 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 93.52 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 93.47 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 93.47 | |
| PRK14181 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.41 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 93.35 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 93.35 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 93.32 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 93.29 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 93.27 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 93.2 | |
| PRK02318 | 381 | mannitol-1-phosphate 5-dehydrogenase; Provisional | 93.15 | |
| COG0078 | 310 | ArgF Ornithine carbamoyltransferase [Amino acid tr | 93.13 | |
| PRK02006 | 498 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.13 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 93.11 | |
| PLN00106 | 323 | malate dehydrogenase | 93.11 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 93.09 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 93.07 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 92.97 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 92.96 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 92.9 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 92.85 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 92.83 | |
| TIGR01745 | 366 | asd_gamma aspartate-semialdehyde dehydrogenase, ga | 92.81 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 92.78 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 92.78 | |
| PRK14168 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.76 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 92.74 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 92.71 | |
| PLN02527 | 306 | aspartate carbamoyltransferase | 92.7 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 92.67 | |
| PRK14804 | 311 | ornithine carbamoyltransferase; Provisional | 92.67 | |
| PRK00779 | 304 | ornithine carbamoyltransferase; Provisional | 92.66 | |
| PRK04284 | 332 | ornithine carbamoyltransferase; Provisional | 92.56 | |
| PRK11891 | 429 | aspartate carbamoyltransferase; Provisional | 92.44 | |
| PRK12562 | 334 | ornithine carbamoyltransferase subunit F; Provisio | 92.36 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 92.35 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 92.29 | |
| PRK08223 | 287 | hypothetical protein; Validated | 92.29 | |
| PRK02255 | 338 | putrescine carbamoyltransferase; Provisional | 92.28 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 92.19 | |
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 92.17 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 92.17 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 92.13 | |
| PF03447 | 117 | NAD_binding_3: Homoserine dehydrogenase, NAD bindi | 92.12 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 92.08 | |
| PRK01713 | 334 | ornithine carbamoyltransferase; Provisional | 92.0 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 92.0 | |
| TIGR00658 | 304 | orni_carb_tr ornithine carbamoyltransferase. Most | 91.97 | |
| PRK04690 | 468 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 91.77 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 91.77 | |
| PRK14573 | 809 | bifunctional D-alanyl-alanine synthetase A/UDP-N-a | 91.73 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 91.49 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 91.39 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 91.36 | |
| PRK00856 | 305 | pyrB aspartate carbamoyltransferase catalytic subu | 91.35 | |
| PRK14167 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 91.31 | |
| PRK02102 | 331 | ornithine carbamoyltransferase; Validated | 91.27 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 91.22 | |
| TIGR03693 | 637 | ocin_ThiF_like putative thiazole-containing bacter | 91.06 | |
| TIGR01087 | 433 | murD UDP-N-acetylmuramoylalanine--D-glutamate liga | 91.03 | |
| KOG3007 | 333 | consensus Mu-crystallin [Amino acid transport and | 90.93 | |
| PRK03515 | 336 | ornithine carbamoyltransferase subunit I; Provisio | 90.9 | |
| PLN02342 | 348 | ornithine carbamoyltransferase | 90.86 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 90.83 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 90.6 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 90.57 | |
| PRK07200 | 395 | aspartate/ornithine carbamoyltransferase family pr | 90.49 | |
| TIGR01532 | 325 | E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas | 90.48 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 90.46 | |
| KOG1495 | 332 | consensus Lactate dehydrogenase [Energy production | 90.2 | |
| PLN02477 | 410 | glutamate dehydrogenase | 90.04 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 90.0 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 89.93 | |
| TIGR01082 | 448 | murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a | 89.92 | |
| PRK13814 | 310 | pyrB aspartate carbamoyltransferase catalytic subu | 89.91 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 89.88 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 89.84 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 89.79 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 89.77 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 89.73 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 89.68 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 89.68 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 89.57 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 89.55 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 89.5 | |
| TIGR01317 | 485 | GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal | 89.44 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 89.4 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 89.36 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 89.29 | |
| PRK06392 | 326 | homoserine dehydrogenase; Provisional | 89.26 | |
| PRK03806 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 89.25 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 89.25 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 89.23 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 89.19 | |
| PRK10637 | 457 | cysG siroheme synthase; Provisional | 89.17 | |
| PRK03803 | 448 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 89.13 | |
| PRK08192 | 338 | aspartate carbamoyltransferase; Provisional | 89.1 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 89.09 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 89.09 | |
| PRK05717 | 255 | oxidoreductase; Validated | 89.08 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 89.06 | |
| PRK08374 | 336 | homoserine dehydrogenase; Provisional | 89.03 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 88.98 | |
| TIGR03316 | 357 | ygeW probable carbamoyltransferase YgeW. Members o | 88.84 | |
| cd01486 | 307 | Apg7 Apg7 is an E1-like protein, that activates tw | 88.62 | |
| PRK14031 | 444 | glutamate dehydrogenase; Provisional | 88.58 | |
| PRK07411 | 390 | hypothetical protein; Validated | 88.54 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 88.54 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 88.43 | |
| PLN02514 | 357 | cinnamyl-alcohol dehydrogenase | 88.38 | |
| PRK09414 | 445 | glutamate dehydrogenase; Provisional | 88.3 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 88.26 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 88.21 | |
| COG0334 | 411 | GdhA Glutamate dehydrogenase/leucine dehydrogenase | 88.19 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 88.11 | |
| TIGR03570 | 201 | NeuD_NnaD sugar O-acyltransferase, sialic acid O-a | 88.04 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 87.83 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 87.72 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 87.71 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 87.69 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 87.67 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 87.66 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 87.61 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 87.58 | |
| COG1062 | 366 | AdhC Zn-dependent alcohol dehydrogenases, class II | 87.56 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 87.47 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 87.35 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 87.33 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 87.31 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 87.26 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 87.22 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 87.2 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 86.97 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 86.79 | |
| TIGR03855 | 229 | NAD_NadX aspartate dehydrogenase. Members of this | 86.61 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 86.61 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 86.57 | |
| PRK13376 | 525 | pyrB bifunctional aspartate carbamoyltransferase c | 86.57 | |
| PRK04523 | 335 | N-acetylornithine carbamoyltransferase; Reviewed | 86.53 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 86.53 | |
| cd05283 | 337 | CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam | 86.49 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 86.37 | |
| cd08298 | 329 | CAD2 Cinnamyl alcohol dehydrogenases (CAD). These | 86.33 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 86.26 | |
| PRK04663 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 86.22 | |
| PF02056 | 183 | Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP | 86.22 | |
| COG0493 | 457 | GltD NADPH-dependent glutamate synthase beta chain | 86.11 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 86.11 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 85.96 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 85.96 | |
| KOG0399 | 2142 | consensus Glutamate synthase [Amino acid transport | 85.9 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 85.85 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 85.82 |
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-74 Score=559.08 Aligned_cols=288 Identities=33% Similarity=0.545 Sum_probs=277.1
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
+.|+| |||+|||||+||+++|+||||| |++|+|++|.++.+|++|+++||. +.+++|++++||+|+++
T Consensus 14 ~~Lkg-K~iaIIGYGsQG~ahalNLRDS------GlnViiGlr~g~~s~~kA~~dGf~-----V~~v~ea~k~ADvim~L 81 (338)
T COG0059 14 DLLKG-KKVAIIGYGSQGHAQALNLRDS------GLNVIIGLRKGSSSWKKAKEDGFK-----VYTVEEAAKRADVVMIL 81 (338)
T ss_pred hHhcC-CeEEEEecChHHHHHHhhhhhc------CCcEEEEecCCchhHHHHHhcCCE-----eecHHHHhhcCCEEEEe
Confidence 58999 9999999999999999999999 999999999999999999999999 57999999999999999
Q ss_pred cCCchHHHHHH-HHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEe
Q 014834 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (417)
Q Consensus 186 vpd~~~~~Vl~-eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~lia 264 (417)
+||..|.+||+ +|.|+|++|++|.|+|||++++. .+.||+|++|+||+||+||+.||++|++| +|+|++++
T Consensus 82 ~PDe~q~~vy~~~I~p~Lk~G~aL~FaHGfNihf~---~i~ppkdvdV~MVAPKgPG~~VR~~y~~G-----~GvP~LiA 153 (338)
T COG0059 82 LPDEQQKEVYEKEIAPNLKEGAALGFAHGFNIHFG---LIVPPKDVDVIMVAPKGPGHLVRREYKEG-----FGVPALIA 153 (338)
T ss_pred CchhhHHHHHHHHhhhhhcCCceEEeccccceecc---eecCCccCcEEEEcCCCCcHHHHHHHHcc-----CCceeEEE
Confidence 99999999998 79999999999999999999775 47999999999999999999999999996 89999999
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCCc--eeccchhhhhhhhccccchhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 014834 265 VHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVECI 342 (417)
Q Consensus 265 v~~dvsgea~e~a~~L~~alG~~~--~iettf~~e~~~dl~ge~t~L~G~~pA~iea~~d~~v~~Gl~~e~A~~~~~q~~ 342 (417)
++||+||+++++|++|+.++|++| +++|||++|+++||||||++|||++.++|+++||.+|++|++||.||++|+|++
T Consensus 154 V~qD~sG~a~~~Ala~AkgiGg~RaGvieTTFkeEtetDLfGEQ~vLcGgl~~li~agfetLvEaGy~PE~AyfE~lhE~ 233 (338)
T COG0059 154 VHQDASGKALDIALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLQALIKAGFETLVEAGYQPELAYFECLHEL 233 (338)
T ss_pred EEeCCCchHHHHHHHHHHhcCCCccceEeeeeHHhhhcccccchhhhhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999999999999999999999997 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcHHHHHhcccCchhhhhhhhhhc-c--ChhHHHHHHHHHHhhccChHHHHHHHcCCcccccccccc
Q 014834 343 TGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSA-S--YYPCMEILYECYEDVAAGSEIRSVVLAGRRFYVSSYRLR 416 (417)
Q Consensus 343 ~~g~~~li~e~G~~~l~~~vss~~~~~~~~~~~~-~--~~~~~~~m~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~ 416 (417)
+ .|++||+|.|+..|+++|| ||++||+|..+ + +..+++.|+++|++||||+|+|+|+++++.-++..++||
T Consensus 234 k-lIvdLiyegGi~~M~~siS--nTAeyG~~~~gprii~~~~k~~mk~~l~dIq~G~Fak~~~~e~~~g~p~l~~~r 307 (338)
T COG0059 234 K-LIVDLIYEGGITNMRYSIS--NTAEYGDYTRGPRIIDAETKEEMKKVLKDIQSGEFAKEWILENQAGRPKLEALR 307 (338)
T ss_pred H-HHHHHHHHhhHHHHHHhcC--CHHHhcccccCceeecHHhHHHHHHHHHHHhcChhHHHHHHhhhcCCHHHHHHH
Confidence 9 9999999999999999999 78899998665 3 567789999999999999999999999999999999887
|
|
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-68 Score=525.70 Aligned_cols=284 Identities=31% Similarity=0.505 Sum_probs=266.1
Q ss_pred chhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEE
Q 014834 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 104 ~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIVi 183 (417)
....|+| |+|||||+|+||.++|+||+++ |++|++++++ .++++.+.+.|+.. .+++|++++||+|+
T Consensus 10 ~~~~Lkg-KtVGIIG~GsIG~amA~nL~d~------G~~ViV~~r~-~~s~~~A~~~G~~v-----~sl~Eaak~ADVV~ 76 (335)
T PRK13403 10 NVELLQG-KTVAVIGYGSQGHAQAQNLRDS------GVEVVVGVRP-GKSFEVAKADGFEV-----MSVSEAVRTAQVVQ 76 (335)
T ss_pred ChhhhCc-CEEEEEeEcHHHHHHHHHHHHC------cCEEEEEECc-chhhHHHHHcCCEE-----CCHHHHHhcCCEEE
Confidence 3588999 9999999999999999999999 9999999876 56778888889873 58999999999999
Q ss_pred EccCCchHHHHHH-HHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEE
Q 014834 184 LLISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSS 262 (417)
Q Consensus 184 Lavpd~~~~~Vl~-eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~l 262 (417)
+++|+..+.+++. +++++|++|++|+++|||+|++. .+.||+|+||++|+||+||+.||++|++| +|+|++
T Consensus 77 llLPd~~t~~V~~~eil~~MK~GaiL~f~hgfni~~~---~i~pp~~vdv~mvaPKgpG~~vR~~y~~G-----~Gvp~l 148 (335)
T PRK13403 77 MLLPDEQQAHVYKAEVEENLREGQMLLFSHGFNIHFG---QINPPSYVDVAMVAPKSPGHLVRRVFQEG-----NGVPAL 148 (335)
T ss_pred EeCCChHHHHHHHHHHHhcCCCCCEEEECCCcceecC---ceeCCCCCeEEEECCCCCChHHHHHHHcC-----CCceeE
Confidence 9999988888886 69999999999999999999775 47999999999999999999999999996 899999
Q ss_pred EeecCCCCHHHHHHHHHHHHHhCCCc--eeccchhhhhhhhccccchhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 014834 263 FAVHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVE 340 (417)
Q Consensus 263 iav~~dvsgea~e~a~~L~~alG~~~--~iettf~~e~~~dl~ge~t~L~G~~pA~iea~~d~~v~~Gl~~e~A~~~~~q 340 (417)
++++||+||++.+++++|+.++|++| +++|||++|+++||||||++|||++.++|+++||++|++||+||+||++|+|
T Consensus 149 ~av~qd~sg~a~~~ala~a~~iG~~ragv~~ttf~~EtetDlfgEq~vL~Gg~~~li~~gfe~lveaGy~pe~Ayfe~~h 228 (335)
T PRK13403 149 VAVHQDATGTALHVALAYAKGVGCTRAGVIETTFQEETETDLFGEQAVLCGGVTALVKAGFETLTEGGYRPEIAYFECLH 228 (335)
T ss_pred EEEEECCCCcHHHHHHHHHHHcCCCceeEEecchHHHHhhhhcccchhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999999999999999997 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcHHHHHhcccCchhhhhhhhhhc-c--ChhHHHHHHHHHHhhccChHHHHHHHcCCccccc
Q 014834 341 CITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSA-S--YYPCMEILYECYEDVAAGSEIRSVVLAGRRFYVS 411 (417)
Q Consensus 341 ~~~~g~~~li~e~G~~~l~~~vss~~~~~~~~~~~~-~--~~~~~~~m~~~~~~v~~g~~~~~~~~~~~~~~~~ 411 (417)
+++ .|++||+|+|+.+|+++|| +|+|||+|.++ + ++.+|+.|+++|++||+|+|||+||.+++.-+++
T Consensus 229 e~k-li~dli~e~G~~~m~~~~S--~taeyG~~~~g~~ii~~~~k~~m~~~l~~iq~g~fa~~~~~e~~~g~~~ 299 (335)
T PRK13403 229 ELK-LIVDLMYEGGLTNMRHSIS--DTAEFGDYVTGSRIVTDETKKEMKRVLTEIQQGEFAKKWILENQAGRPT 299 (335)
T ss_pred HHH-HHHHHHHHccHHHHHHhhC--cHHhcCCccCCCcccCHHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCHH
Confidence 997 9999999999999999999 88999998766 2 6789999999999999999999999998865543
|
|
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-68 Score=545.84 Aligned_cols=312 Identities=27% Similarity=0.385 Sum_probs=294.2
Q ss_pred ccccccccchHhhhh-----hcccchhhhcccccccccchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEE
Q 014834 71 LLDFETSVFKKDAIS-----LANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV 145 (417)
Q Consensus 71 ~~~~~~~~~~~~~~~-----~~~~~e~~vr~g~~~f~~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViV 145 (417)
+|||||++||+|+++ |++++| |++.+..|+| |+|+|||||+||+++|.||+++ |++|+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~r~~~r~e---------f~~~~~~Lkg-KtIaIIGyGSqG~AqAlNLrdS------GvnVvv 64 (487)
T PRK05225 1 ANYFNTLNLRQQLAQLGKCRFMDRDE---------FADGASYLKG-KKIVIVGCGAQGLNQGLNMRDS------GLDISY 64 (487)
T ss_pred CCccccccHHHHHHHhccceecchhh---------ccchhHHhCC-CEEEEEccCHHHHHHhCCCccc------cceeEE
Confidence 499999999999998 778888 8888899999 9999999999999999999999 999999
Q ss_pred EecCC-----hhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEecCchhhhhh
Q 014834 146 GLRKG-----SRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQ 220 (417)
Q Consensus 146 g~r~~-----s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~G~~i~~~~ 220 (417)
++|.+ +++++.|.+.||. +.+++|++++||+|++++||..+..++++|+|+||+|++|.++|||+|++.
T Consensus 65 glr~~~id~~~~s~~kA~~dGF~-----v~~~~Ea~~~ADvVviLlPDt~q~~v~~~i~p~LK~Ga~L~fsHGFni~~~- 138 (487)
T PRK05225 65 ALRKEAIAEKRASWRKATENGFK-----VGTYEELIPQADLVINLTPDKQHSDVVRAVQPLMKQGAALGYSHGFNIVEV- 138 (487)
T ss_pred eccccccccccchHHHHHhcCCc-----cCCHHHHHHhCCEEEEcCChHHHHHHHHHHHhhCCCCCEEEecCCceeeeC-
Confidence 99986 5789999999997 568999999999999999999988999999999999999999999999765
Q ss_pred hcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeec--CCCCHHHHHHHHHHHHHhCCCc--eeccchhh
Q 014834 221 SIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH--QDVDGRATNVALGWSVALGSPF--TFATTLEQ 296 (417)
Q Consensus 221 ~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~--~dvsgea~e~a~~L~~alG~~~--~iettf~~ 296 (417)
++.||+|++||+|+||+||+.||++|++| +|+|++|||+ ||++|+++++|++|+.++|+++ +++|||++
T Consensus 139 --~i~~~~dvdVimvAPKgpG~~vR~~y~~G-----~Gvp~l~AV~~~qD~~g~a~~~ala~a~~iG~~ragv~~ttf~~ 211 (487)
T PRK05225 139 --GEQIRKDITVVMVAPKCPGTEVREEYKRG-----FGVPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVA 211 (487)
T ss_pred --ceeCCCCCcEEEECCCCCCchHHHHHhcC-----CCceEEEEEeecCCCCchHHHHHHHHHHHhCCCccceeecchHH
Confidence 56999999999999999999999999996 8999999999 8999999999999999999997 89999999
Q ss_pred hhhhhccccchhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhcccCchhhhhhhhhhc
Q 014834 297 EYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSA 376 (417)
Q Consensus 297 e~~~dl~ge~t~L~G~~pA~iea~~d~~v~~Gl~~e~A~~~~~q~~~~g~~~li~e~G~~~l~~~vss~~~~~~~~~~~~ 376 (417)
|+++||||||++|||++++.++++||.+|++|++|++||+++++++. .|+++|.++||..|+|++| ++++||.+..
T Consensus 212 E~~sDL~GEq~vLcG~~~~~~~~~Fe~lve~G~~pe~A~k~~~~~~E-~I~e~i~e~GI~~m~d~~S--~tak~ga~~~- 287 (487)
T PRK05225 212 EVKSDLMGEQTILCGMLQAGSLLCFDKLVAEGTDPAYAEKLIQFGWE-TITEALKQGGITLMMDRLS--NPAKIRAFEL- 287 (487)
T ss_pred HHhhcchhhHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhHH-HHHHHHHhccHHHHHHhcc--chhhcccccc-
Confidence 99999999999999999999999999999999999999999999998 9999999999999999999 6678999743
Q ss_pred cChhHHHHH----HHHHHhhccChHHHHHHHcCCcccccccccc
Q 014834 377 SYYPCMEIL----YECYEDVAAGSEIRSVVLAGRRFYVSSYRLR 416 (417)
Q Consensus 377 ~~~~~~~~m----~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~ 416 (417)
.+.+|+.| +++|++|+||+|+|+|+.++.+.++++..||
T Consensus 288 -~~~~k~~m~p~f~~~~~~I~sG~fak~~m~d~~~~~~~l~~~r 330 (487)
T PRK05225 288 -SEQLKEIMAPLFQKHMDDIISGEFSSTMMADWANDDKKLLTWR 330 (487)
T ss_pred -cHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhcCChHHHHHH
Confidence 35566666 9999999999999999999999999999998
|
|
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-63 Score=496.61 Aligned_cols=288 Identities=32% Similarity=0.523 Sum_probs=269.3
Q ss_pred hhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
...++| ++|||||+|+||.++|++|+++ |++|++++++++++++.+.+.|+.. .+.+|++++||+|++
T Consensus 12 ~~~L~g-ktIgIIG~GsmG~AlA~~L~~s------G~~Vvv~~r~~~~s~~~A~~~G~~~-----~s~~eaa~~ADVVvL 79 (330)
T PRK05479 12 LSLIKG-KKVAIIGYGSQGHAHALNLRDS------GVDVVVGLREGSKSWKKAEADGFEV-----LTVAEAAKWADVIMI 79 (330)
T ss_pred hhhhCC-CEEEEEeeHHHHHHHHHHHHHC------CCEEEEEECCchhhHHHHHHCCCee-----CCHHHHHhcCCEEEE
Confidence 477899 9999999999999999999999 9999999888778888898899874 589999999999999
Q ss_pred ccCCchHHHHH-HHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEE
Q 014834 185 LISDAAQADNY-EKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (417)
Q Consensus 185 avpd~~~~~Vl-~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~li 263 (417)
++||..+.+++ ++|.+++++|++|+++|||++++.. +.||++++|||+|||+|++.+|++|+.| +|+|+++
T Consensus 80 aVPd~~~~~V~~~~I~~~Lk~g~iL~~a~G~~i~~~~---~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G-----~Gv~~l~ 151 (330)
T PRK05479 80 LLPDEVQAEVYEEEIEPNLKEGAALAFAHGFNIHFGQ---IVPPADVDVIMVAPKGPGHLVRREYEEG-----GGVPCLI 151 (330)
T ss_pred cCCHHHHHHHHHHHHHhcCCCCCEEEECCCCChhhce---eccCCCCcEEEeCCCCCchhhhhhhhcC-----CCceEEE
Confidence 99999999999 6799999999999999999998875 4789999999999999999999999996 8999999
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCc--eeccchhhhhhhhccccchhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 014834 264 AVHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVEC 341 (417)
Q Consensus 264 av~~dvsgea~e~a~~L~~alG~~~--~iettf~~e~~~dl~ge~t~L~G~~pA~iea~~d~~v~~Gl~~e~A~~~~~q~ 341 (417)
++++|+++++++.+++|+.++|+++ +++|||++|+++||||||++|||++.++++++|+.+|++|++||+||++|+|+
T Consensus 152 av~~d~t~~a~~~a~~l~~aiG~~~~g~~~ttf~~e~~~dl~geq~vl~gg~~~l~~~~~e~l~eaG~~pe~Ay~e~~~e 231 (330)
T PRK05479 152 AVHQDASGNAKDLALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLTELIKAGFETLVEAGYQPEMAYFECLHE 231 (330)
T ss_pred EecCCCCHHHHHHHHHHHHHcCCCccceeeeeecccccccchhhHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999999999999999996 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcHHHHHhcccCchhhhhhhhhhc-c--ChhHHHHHHHHHHhhccChHHHHHHHcCCccccccccc
Q 014834 342 ITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSA-S--YYPCMEILYECYEDVAAGSEIRSVVLAGRRFYVSSYRL 415 (417)
Q Consensus 342 ~~~g~~~li~e~G~~~l~~~vss~~~~~~~~~~~~-~--~~~~~~~m~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~ 415 (417)
++ +|++||+|+|+.+|+++|| +|+|||+|..+ + ++.+|+.|+++|++||+|+|+|+||++++..++..-.+
T Consensus 232 ~k-~i~dl~~~~g~~~m~~~~s--~ta~~g~~~~~~~~~~~~~~~~m~~~~~~i~~g~fa~~~~~~~~~~~~~~~~~ 305 (330)
T PRK05479 232 LK-LIVDLIYEGGIANMRYSIS--NTAEYGDYVSGPRVITEETKKEMKEVLKDIQSGEFAKEWILENKAGRPTFKAL 305 (330)
T ss_pred HH-HHHHHHHHccHHHHHHhcC--cHhhcCccccCCcccCHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCcHHHHHH
Confidence 97 9999999999999999999 78899998665 3 67899999999999999999999999998766554444
|
|
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-60 Score=475.79 Aligned_cols=281 Identities=32% Similarity=0.514 Sum_probs=256.2
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccC
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavp 187 (417)
|+| |||+|||+|+||.++|++|+++ |++|++++++.+++++.+.+.|+.. .++.|++++||+|+|++|
T Consensus 1 l~~-kkIgiIG~G~mG~AiA~~L~~s------G~~Viv~~~~~~~~~~~a~~~Gv~~-----~s~~ea~~~ADiVvLaVp 68 (314)
T TIGR00465 1 LKG-KTVAIIGYGSQGHAQALNLRDS------GLNVIVGLRKGGASWKKATEDGFKV-----GTVEEAIPQADLIMNLLP 68 (314)
T ss_pred CCc-CEEEEEeEcHHHHHHHHHHHHC------CCeEEEEECcChhhHHHHHHCCCEE-----CCHHHHHhcCCEEEEeCC
Confidence 578 9999999999999999999999 9988888887666777777889873 468899999999999999
Q ss_pred CchHH-HHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeec
Q 014834 188 DAAQA-DNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (417)
Q Consensus 188 d~~~~-~Vl~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~ 266 (417)
|+.+. .+.++|.++++++.+|+++|||++++++. .+|++++|||+|||+|++++|++|++| +|++++++++
T Consensus 69 p~~~~~~v~~ei~~~l~~g~iVs~aaG~~i~~~~~---~~~~~~~VvrvmPn~p~~~vr~~~~~G-----~G~~~l~a~~ 140 (314)
T TIGR00465 69 DEVQHEVYEAEIQPLLKEGKTLGFSHGFNIHFVQI---VPPKDVDVVMVAPKGPGTLVREEYKEG-----FGVPTLIAVE 140 (314)
T ss_pred cHhHHHHHHHHHHhhCCCCcEEEEeCCccHhhccc---cCCCCCcEEEECCCCCcHHHHHHhhcC-----CCeeEEEEec
Confidence 99555 45567999999999999999999998864 788899999999999999999999996 8999988899
Q ss_pred CCCCHHHHHHHHHHHHHhCCCc--eeccchhhhhhhhccccchhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 014834 267 QDVDGRATNVALGWSVALGSPF--TFATTLEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVECITG 344 (417)
Q Consensus 267 ~dvsgea~e~a~~L~~alG~~~--~iettf~~e~~~dl~ge~t~L~G~~pA~iea~~d~~v~~Gl~~e~A~~~~~q~~~~ 344 (417)
+++++++++.+++|+.++|..| +++|+|++|+++|+||++|+|||++|||+.+++|++|++||||++||++++||++
T Consensus 141 ~~~~~~~~~~~~~~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~v~~~~ealv~~G~~~e~A~~~~~~~~~- 219 (314)
T TIGR00465 141 QDPTGEAMAIALAYAKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTALIKAGFDTLVEAGYQPELAYFETVHELK- 219 (314)
T ss_pred CCCCHHHHHHHHHHHHHcCCCccceeechhHhhhhHHhcCcchhHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-
Confidence 9999999999999999999996 8999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHhcHHHHHhcccCchhhhhhhhhhcc--ChhHHHHHHHHHHhhccChHHHHHHHcCCccccc
Q 014834 345 IISKIISTQGMLAVYNSFSGEDKKEFEKAYSAS--YYPCMEILYECYEDVAAGSEIRSVVLAGRRFYVS 411 (417)
Q Consensus 345 g~~~li~e~G~~~l~~~vss~~~~~~~~~~~~~--~~~~~~~m~~~~~~v~~g~~~~~~~~~~~~~~~~ 411 (417)
|+++|++++|+..|+|+|| +|+|||+|..++ ++.+|+.|+++|++||+|+|+|+|+.+++..+.+
T Consensus 220 g~~~l~~e~g~~~l~~~Vs--staeyg~~~~~~~~~~~~~~~~~~~~~~i~~g~fa~~~~~~~~~~~~~ 286 (314)
T TIGR00465 220 LIVDLIYEGGITGMRDRIS--NTAEYGALTRRRIIKEELKPEMQKILKEIQNGEFAKEWALENEAGKPA 286 (314)
T ss_pred HHHHHHHHhcHHHHHHHcC--CHHHcCcchhHHHhhHHHHHHHHHHHHHhCCChhhhhhhhhccCCcHH
Confidence 9999999999999999999 678999984443 5678899999999999999999999887655443
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=298.84 Aligned_cols=160 Identities=44% Similarity=0.726 Sum_probs=137.1
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccC
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavp 187 (417)
|++ |+|+|||||+||.++|+||||| |++|+|++|++++++++|+++||. +.+.+|++++||+|++++|
T Consensus 2 l~~-k~IAViGyGsQG~a~AlNLrDS------G~~V~Vglr~~s~s~~~A~~~Gf~-----v~~~~eAv~~aDvV~~L~P 69 (165)
T PF07991_consen 2 LKG-KTIAVIGYGSQGHAHALNLRDS------GVNVIVGLREGSASWEKAKADGFE-----VMSVAEAVKKADVVMLLLP 69 (165)
T ss_dssp HCT-SEEEEES-SHHHHHHHHHHHHC------C-EEEEEE-TTCHHHHHHHHTT-E-----CCEHHHHHHC-SEEEE-S-
T ss_pred cCC-CEEEEECCChHHHHHHHHHHhC------CCCEEEEecCCCcCHHHHHHCCCe-----eccHHHHHhhCCEEEEeCC
Confidence 678 9999999999999999999999 999999999999999999999999 5799999999999999999
Q ss_pred CchHHHHH-HHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeec
Q 014834 188 DAAQADNY-EKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (417)
Q Consensus 188 d~~~~~Vl-~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~ 266 (417)
|..|.++| ++|.|+|++|++|+++|||++++. .+.+|++++|++++||+||+.+|++|++| +|+|++++++
T Consensus 70 D~~q~~vy~~~I~p~l~~G~~L~fahGfni~~~---~i~pp~~vdV~mvAPKgpG~~vR~~y~~G-----~Gvp~l~AV~ 141 (165)
T PF07991_consen 70 DEVQPEVYEEEIAPNLKPGATLVFAHGFNIHYG---LIKPPKDVDVIMVAPKGPGHLVRREYVEG-----RGVPALIAVH 141 (165)
T ss_dssp HHHHHHHHHHHHHHHS-TT-EEEESSSHHHHCT---TS---TTSEEEEEEESSSCHHHHHHHHCC-----TS--EEEEEE
T ss_pred hHHHHHHHHHHHHhhCCCCCEEEeCCcchhhcC---cccCCCCCeEEEEecCCCChHHHHHHHcC-----CCceEEEEEE
Confidence 99999999 479999999999999999999764 47899999999999999999999999996 8999999999
Q ss_pred CCCCHHHHHHHHHHHHHhCCC
Q 014834 267 QDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 267 ~dvsgea~e~a~~L~~alG~~ 287 (417)
||.|+++++++++|+.++|+.
T Consensus 142 qD~sg~A~~~ala~A~~iG~~ 162 (165)
T PF07991_consen 142 QDASGKAKELALAYAKAIGGT 162 (165)
T ss_dssp E-SSS-HHHHHHHHHHHTTHH
T ss_pred ECCCchHHHHHHHHHHHhCCc
Confidence 999999999999999999975
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-37 Score=299.24 Aligned_cols=219 Identities=18% Similarity=0.259 Sum_probs=198.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCC----cEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G----~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
|+||||||+|+||.+|+.+|.++ | .+|++.+|..++....+.++|+.. ..+..+++.++|+|||++
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~------g~~~~~~I~v~~~~~e~~~~l~~~~g~~~----~~~~~~~~~~advv~Lav 70 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKS------GALPPEEIIVTNRSEEKRAALAAEYGVVT----TTDNQEAVEEADVVFLAV 70 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhc------CCCCcceEEEeCCCHHHHHHHHHHcCCcc----cCcHHHHHhhCCEEEEEe
Confidence 47999999999999999999999 7 478888888666556888888873 567889999999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcE-EEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEee
Q 014834 187 SDAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gai-Li~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav 265 (417)
||+...+++.++.+ ..++++ |++++|+++..++. .++ +.+|+|+|||+|..+ |+|++. ++.
T Consensus 71 KPq~~~~vl~~l~~-~~~~~lvISiaAGv~~~~l~~---~l~-~~~vvR~MPNt~a~v------------g~g~t~-i~~ 132 (266)
T COG0345 71 KPQDLEEVLSKLKP-LTKDKLVISIAAGVSIETLER---LLG-GLRVVRVMPNTPALV------------GAGVTA-ISA 132 (266)
T ss_pred ChHhHHHHHHHhhc-ccCCCEEEEEeCCCCHHHHHH---HcC-CCceEEeCCChHHHH------------cCccee-eec
Confidence 99999999999998 777775 56999999999887 666 889999999999999 899999 777
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHH
Q 014834 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHG----IVESLFRRFTENGMSEDLAYKNTVEC 341 (417)
Q Consensus 266 ~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA----~iea~~d~~v~~Gl~~e~A~~~~~q~ 341 (417)
..++++++.+.+.+|+..+|.. .+++|++||..|+++||+|| ++|++.+++|+.|+|+++|++++.|+
T Consensus 133 ~~~~~~~~~~~v~~l~~~~G~v--------~~v~E~~~da~TaisGSgPAyv~~~iEal~~agv~~Gl~~~~A~~l~~~t 204 (266)
T COG0345 133 NANVSEEDKAFVEALLSAVGKV--------VEVEESLMDAVTALSGSGPAYVFLFIEALADAGVRLGLPREEARELAAQT 204 (266)
T ss_pred CccCCHHHHHHHHHHHHhcCCe--------EEechHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 8999999999999999999975 35668899999999999999 48999999999999999999999999
Q ss_pred HHHHHHHHHHHhcH--HHHHhcccCch
Q 014834 342 ITGIISKIISTQGM--LAVYNSFSGED 366 (417)
Q Consensus 342 ~~~g~~~li~e~G~--~~l~~~vss~~ 366 (417)
+. |+++|+.|+|. ..|+|+||||.
T Consensus 205 ~~-Gaakll~e~~~~p~~Lr~~VtSPG 230 (266)
T COG0345 205 VA-GAAKLLLESGEHPAELRDQVTSPG 230 (266)
T ss_pred HH-HHHHHHHhcCCCHHHHHHhCcCCC
Confidence 99 99999999999 89999999995
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-35 Score=285.95 Aligned_cols=221 Identities=18% Similarity=0.243 Sum_probs=191.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc----EEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~----~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavp 187 (417)
+||+|||+|+||.+|+++|.++ |+ +|++.+|+.++....+.+.|+.. +.++.|++++||+|||++|
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~------g~~~~~~I~v~~r~~~~~~~l~~~~g~~~----~~~~~e~~~~aDiIiLavk 72 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINK------NIVSPDQIICSDLNVSNLKNASDKYGITI----TTNNNEVANSADILILSIK 72 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHC------CCCCCceEEEECCCHHHHHHHHHhcCcEE----eCCcHHHHhhCCEEEEEeC
Confidence 6899999999999999999988 64 57777665444333333478754 5678889999999999999
Q ss_pred CchHHHHHHHHHhcCCCCcE-EEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeec
Q 014834 188 DAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~gai-Li~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~ 266 (417)
|+...++++++.++++++++ |++++|+++..+++ .++...+++|+|||+|..+ |+|++. ++.+
T Consensus 73 P~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~---~l~~~~~vvR~MPN~~~~v------------g~g~t~-~~~~ 136 (272)
T PRK12491 73 PDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTEN---EFDRKLKVIRVMPNTPVLV------------GEGMSA-LCFN 136 (272)
T ss_pred hHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHH---hcCCCCcEEEECCChHHHH------------cCceEE-EEeC
Confidence 99999999999999998876 55999999998876 5555668999999999998 799999 5678
Q ss_pred CCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 014834 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHG----IVESLFRRFTENGMSEDLAYKNTVECI 342 (417)
Q Consensus 267 ~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA----~iea~~d~~v~~Gl~~e~A~~~~~q~~ 342 (417)
+.++.++.+.+..||..+|.. .+..|+.|+..++++||+|| +++++.+++++.|+|+++|.+++.|++
T Consensus 137 ~~~~~~~~~~v~~lf~~~G~~--------~~~~E~~~d~~talsgsgPAf~~~~~eal~~a~v~~Gl~~~~A~~l~~~t~ 208 (272)
T PRK12491 137 EMVTEKDIKEVLNIFNIFGQT--------EVVNEKLMDVVTSISGSSPAYVYMFIEAMADAAVLGGMPRKQAYKFAAQAV 208 (272)
T ss_pred CCCCHHHHHHHHHHHHcCCCE--------EEEcHHHhhhHHHhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 889999999999999999975 24457789999999999999 489999999999999999999999999
Q ss_pred HHHHHHHHHHhcH--HHHHhcccCchh
Q 014834 343 TGIISKIISTQGM--LAVYNSFSGEDK 367 (417)
Q Consensus 343 ~~g~~~li~e~G~--~~l~~~vss~~~ 367 (417)
. |.++|+.++|. ..|+|+||||.-
T Consensus 209 ~-G~a~ll~~~~~~p~~l~~~V~sPGG 234 (272)
T PRK12491 209 L-GSAKMVLETGIHPGELKDMVCSPGG 234 (272)
T ss_pred H-HHHHHHHhcCCCHHHHHHhCCCCch
Confidence 9 99999999998 899999999953
|
|
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-32 Score=264.23 Aligned_cols=220 Identities=14% Similarity=0.162 Sum_probs=185.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCC----cEEEEEecCChhhHH-HHHHcC-ceecCCCcCCHHhhcCcCCEEEE
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFA-EARAAG-FTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G----~~ViVg~r~~s~s~~-~A~~~G-~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
|+||+|||+|+||.+++.+|++. | .+|++++++.....+ ...+.+ ... ..+..++++++|+||+
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~------g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~----~~~~~e~~~~aDvVil 70 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLET------EVATPEEIILYSSSKNEHFNQLYDKYPTVEL----ADNEAEIFTKCDHSFI 70 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHC------CCCCcccEEEEeCCcHHHHHHHHHHcCCeEE----eCCHHHHHhhCCEEEE
Confidence 57999999999999999999988 7 577777765433222 222332 332 3578888999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCc-EEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEE
Q 014834 185 LISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~ga-iLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~li 263 (417)
++||+...++++++.+++++++ +|+++.|+++..+++ .+|. .+++|+|||+|..+ |+|++. +
T Consensus 71 avpp~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~---~~~~-~~vvR~MPN~~~~~------------g~g~t~-~ 133 (277)
T PRK06928 71 CVPPLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLE---ITPG-LQVSRLIPSLTSAV------------GVGTSL-V 133 (277)
T ss_pred ecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcCC-CCEEEEeCccHHHH------------hhhcEE-E
Confidence 9999999999999999998887 466999999988876 4443 58999999999998 789998 5
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHHH----HHHHHHHHHHc-CCCHHHHHHHH
Q 014834 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGI----VESLFRRFTEN-GMSEDLAYKNT 338 (417)
Q Consensus 264 av~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA~----iea~~d~~v~~-Gl~~e~A~~~~ 338 (417)
+.+.++++++.+.+..||..+|.. .++.|++|+..++++||+||| ++++.+++++. |+++++|++++
T Consensus 134 ~~~~~~~~~~~~~v~~l~~~~G~~--------~~v~E~~~d~~tal~gsgPA~~~~~~~al~~a~~~~ggl~~~~a~~l~ 205 (277)
T PRK06928 134 AHAETVNEANKSRLEETLSHFSHV--------MTIREENMDIASNLTSSSPGFIAAIFEEFAEAAVRNSSLSDEEAFQFL 205 (277)
T ss_pred ecCCCCCHHHHHHHHHHHHhCCCE--------EEEchhhCceeeeeecCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 668889999999999999999975 234567899999999999994 88999999999 79999999999
Q ss_pred HHHHHHHHHHHHHHhcH--HHHHhcccCch
Q 014834 339 VECITGIISKIISTQGM--LAVYNSFSGED 366 (417)
Q Consensus 339 ~q~~~~g~~~li~e~G~--~~l~~~vss~~ 366 (417)
.|++. |.++|+.++|. ..|+|+||||.
T Consensus 206 ~~~~~-G~a~l~~~~~~~p~~l~~~v~spg 234 (277)
T PRK06928 206 NFALA-GTGKLLVEEDYTFSGTIERVATKG 234 (277)
T ss_pred HHHHH-HHHHHHHccCCCHHHHHHhCCCCC
Confidence 99999 99999999997 99999999995
|
|
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-30 Score=250.69 Aligned_cols=214 Identities=18% Similarity=0.229 Sum_probs=181.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc----EEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~----~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavp 187 (417)
+||+|||+|+||.+++++|+++ +. ++++.+++..+ .++.. ..++.++++++|+|||++|
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~------~~~~~~~i~~~~~~~~~-------~~~~~----~~~~~~~~~~~D~Vilavk 66 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENS------NIIGKENIYYHTPSKKN-------TPFVY----LQSNEELAKTCDIIVLAVK 66 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhC------CCCCcceEEEECCChhc-------CCeEE----eCChHHHHHhCCEEEEEeC
Confidence 6899999999999999999987 62 36655553221 24433 4578888899999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeecC
Q 014834 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~ 267 (417)
|+...++++++.++++++.+|++++|+++..++. .++.+..++|+|||+|... |.|++. +++..
T Consensus 67 p~~~~~vl~~i~~~l~~~~iIS~~aGi~~~~l~~---~~~~~~~vvr~mPn~p~~~------------g~g~t~-i~~~~ 130 (260)
T PTZ00431 67 PDLAGKVLLEIKPYLGSKLLISICGGLNLKTLEE---MVGVEAKIVRVMPNTPSLV------------GQGSLV-FCANN 130 (260)
T ss_pred HHHHHHHHHHHHhhccCCEEEEEeCCccHHHHHH---HcCCCCeEEEECCCchhHh------------cceeEE-EEeCC
Confidence 9999999999999887767788999999877765 4455556899999999776 577877 66778
Q ss_pred CCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 014834 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHG----IVESLFRRFTENGMSEDLAYKNTVECIT 343 (417)
Q Consensus 268 dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA----~iea~~d~~v~~Gl~~e~A~~~~~q~~~ 343 (417)
+++.+..+.+..+|..+|.. .+++|+.|+..++++||+|| +++++.+++++.|+|+++|+++++|++.
T Consensus 131 ~~~~~~~~~v~~l~~~~G~~--------~~v~E~~~d~~ta~~gsgPA~~~~~~~al~~~~v~~Gl~~~~a~~l~~~~~~ 202 (260)
T PTZ00431 131 NVDSTDKKKVIDIFSACGII--------QEIKEKDMDIATAISGCGPAYVFLFIESLIDAGVKNGLNRDVSKNLVLQTIL 202 (260)
T ss_pred CCCHHHHHHHHHHHHhCCcE--------EEEChHHcchhhhhcCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 88889999999999999965 24456689999999999999 4899999999999999999999999999
Q ss_pred HHHHHHHHHhcH--HHHHhcccCchh
Q 014834 344 GIISKIISTQGM--LAVYNSFSGEDK 367 (417)
Q Consensus 344 ~g~~~li~e~G~--~~l~~~vss~~~ 367 (417)
|.++|+.++|. ..|+|+||||.-
T Consensus 203 -G~a~ll~~~~~~~~~l~~~v~spgG 227 (260)
T PTZ00431 203 -GSVHMVKASDQPVQQLKDDVCSPGG 227 (260)
T ss_pred -HHHHHHHhcCCCHHHHHHhCCCCCh
Confidence 99999999987 899999999953
|
|
| >KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-30 Score=249.26 Aligned_cols=225 Identities=19% Similarity=0.236 Sum_probs=197.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc----EEEEEecCChhhHHH-HHHcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAE-ARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~----~ViVg~r~~s~s~~~-A~~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
++|||||.|+|..++++++..+ |+ +++.+.. ..++... .+..|+.. +.++.++++.+|++++++
T Consensus 1 ~~~gfigag~ma~ala~g~~~~------Gi~~~~~i~~s~~-~~~~~~~~~~~~g~~~----~~~n~~~~~~s~v~~~sv 69 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVAS------GIIEANRIWASVQ-TERSLGLMFEALGVKT----VFTNLEVLQASDVVFLSV 69 (267)
T ss_pred CceeEechhhhHHHHHhccccc------CCCchhheeeecC-chhhhhhhhhcCCcee----eechHHHHhhccceeEee
Confidence 4799999999999999999998 86 4544444 3455555 78889886 666789999999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEE-EEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEee
Q 014834 187 SDAAQADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiL-i~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav 265 (417)
+|+.+.+++.++.+.+..+++| ++++|+++..+++ .++...+|||+|||+|..+ |+|..+ ++.
T Consensus 70 Kp~~i~~vls~~~~~~~~~~iivS~aaG~tl~~l~~---~l~~~~rviRvmpNtp~~v------------~eg~sv-~~~ 133 (267)
T KOG3124|consen 70 KPQVIESVLSEIKPKVSKGKIIVSVAAGKTLSSLES---KLSPPTRVIRVMPNTPSVV------------GEGASV-YAI 133 (267)
T ss_pred cchhHHHHhhcCccccccceEEEEEeecccHHHHHH---hcCCCCceEEecCCChhhh------------hcCcEE-Eee
Confidence 9999999999998888888865 5999999988776 5667778999999999998 789986 888
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHHH----HHHHHHHHHHcCCCHHHHHHHHHHH
Q 014834 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGI----VESLFRRFTENGMSEDLAYKNTVEC 341 (417)
Q Consensus 266 ~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA~----iea~~d~~v~~Gl~~e~A~~~~~q~ 341 (417)
..+++.++.+++..++..+|.. .|++|++++..|.|+|++||| +|++.|.+|+.|+||++|+++++|+
T Consensus 134 g~~~~~~D~~l~~~ll~~vG~~--------~evpE~~iDavTgLsGSgPAy~f~~ieaLadGgVkmGlPr~lA~~laaqt 205 (267)
T KOG3124|consen 134 GCHATNEDLELVEELLSAVGLC--------EEVPEKCIDAVTGLSGSGPAYVFVAIEALADGGVKMGLPRQLAYRLAAQT 205 (267)
T ss_pred CCCcchhhHHHHHHHHHhcCcc--------eeCcHHhhhHHhhccCCcHHHHHHHHHHHhccccccCCCHHHHHHHHHHH
Confidence 9999999999999999999976 589999999999999999994 8999999999999999999999999
Q ss_pred HHHHHHHHHHHhcH--HHHHhcccCchh-hhhhh
Q 014834 342 ITGIISKIISTQGM--LAVYNSFSGEDK-KEFEK 372 (417)
Q Consensus 342 ~~~g~~~li~e~G~--~~l~~~vss~~~-~~~~~ 372 (417)
+. |.+||++++|. ..|||.||||.- ..|+-
T Consensus 206 ll-GAakMVl~s~qHP~~Lkd~V~SPgG~TI~gl 238 (267)
T KOG3124|consen 206 LL-GAAKMVLASGQHPAQLKDDVCSPGGTTIYGL 238 (267)
T ss_pred HH-hHHHHHHhccCCcHHHhCCCCCCCcchHHHH
Confidence 99 99999999998 999999999953 33443
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.6e-29 Score=241.69 Aligned_cols=220 Identities=13% Similarity=0.149 Sum_probs=185.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC----cEEEEEecCChh-hHHHHHHcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSR-SFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G----~~ViVg~r~~s~-s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
+||+|||+|+||.+|+++|.++ | .+|++++|+.++ ....+.+.|+.. ..++.+++++||+||+++
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~------g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~----~~~~~e~~~~aDvVilav 73 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHA------NVVKGEQITVSNRSNETRLQELHQKYGVKG----THNKKELLTDANILFLAM 73 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCCCcceEEEECCCCHHHHHHHHHhcCceE----eCCHHHHHhcCCEEEEEe
Confidence 7999999999999999999988 7 577887776543 334445568764 567889999999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEee
Q 014834 187 SDAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiLi-~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav 265 (417)
||+...++++++.+.++++++|+ +++|+++..+.+ .++.+.+|++.|||+|... +.|++. ++.
T Consensus 74 ~p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~---~~~~~~~v~r~mPn~~~~~------------~~~~t~-~~~ 137 (279)
T PRK07679 74 KPKDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRN---LLQKDVPIIRAMPNTSAAI------------LKSATA-ISP 137 (279)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcCCCCeEEEECCCHHHHH------------hcccEE-Eee
Confidence 99999999999999898888766 569999877765 4456678999999999887 578887 566
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHH
Q 014834 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHG----IVESLFRRFTENGMSEDLAYKNTVEC 341 (417)
Q Consensus 266 ~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA----~iea~~d~~v~~Gl~~e~A~~~~~q~ 341 (417)
..+++.++.+.+..||..+|... ++.+++|+..++++|++|+ +++++.|++++.|+++++|++++.++
T Consensus 138 ~~~~~~~~~~~v~~l~~~~G~~~--------~v~e~~~~~~~a~~Gsgpa~~~~~~eal~e~~~~~Gl~~~~a~~~~~~~ 209 (279)
T PRK07679 138 SKHATAEHIQTAKALFETIGLVS--------VVEEEDMHAVTALSGSGPAYIYYVVEAMEKAAKKIGLKEDVAKSLILQT 209 (279)
T ss_pred CCCCCHHHHHHHHHHHHhCCcEE--------EeCHHHhhhHHHhhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 77788899999999999999742 2334568888999999999 48889999999999999999999999
Q ss_pred HHHHHHHHHHHhcH--HHHHhcccCch
Q 014834 342 ITGIISKIISTQGM--LAVYNSFSGED 366 (417)
Q Consensus 342 ~~~g~~~li~e~G~--~~l~~~vss~~ 366 (417)
+. |.++|+.+++. ..|++.||+|.
T Consensus 210 ~~-gsa~~~~~~~~~~~~l~~~v~spg 235 (279)
T PRK07679 210 MI-GAAEMLKASEKHPSILRKEITSPG 235 (279)
T ss_pred HH-HHHHHHHhcCCCHHHHHHhcCCCc
Confidence 99 99999997766 88999999995
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-28 Score=232.17 Aligned_cols=221 Identities=14% Similarity=0.153 Sum_probs=181.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc---E-EEEEecCC-hhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---V-VKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~---~-ViVg~r~~-s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
+||+|||+|+||.+++.+|.+. |. + +++.+|++ ++..+.+.+.|+.. ..+.+++++++|+|++++
T Consensus 5 ~kI~iIG~G~mg~ala~~l~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~DiViiav 74 (245)
T PRK07634 5 HRILFIGAGRMAEAIFSGLLKT------SKEYIEEIIVSNRSNVEKLDQLQARYNVST----TTDWKQHVTSVDTIVLAM 74 (245)
T ss_pred CeEEEECcCHHHHHHHHHHHhC------CCCCcCeEEEECCCCHHHHHHHHHHcCcEE----eCChHHHHhcCCEEEEec
Confidence 7899999999999999999887 52 3 55566643 34444455567654 567889999999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeec
Q 014834 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~ 266 (417)
||+.+.++++++.++++...+|++++|+++..++. .++.+..++++|||++..+ |.|++.+ +..
T Consensus 75 p~~~~~~v~~~l~~~~~~~~vis~~~gi~~~~l~~---~~~~~~~v~r~~Pn~a~~v------------~~g~~~~-~~~ 138 (245)
T PRK07634 75 PPSAHEELLAELSPLLSNQLVVTVAAGIGPSYLEE---RLPKGTPVAWIMPNTAAEI------------GKSISLY-TMG 138 (245)
T ss_pred CHHHHHHHHHHHHhhccCCEEEEECCCCCHHHHHH---HcCCCCeEEEECCcHHHHH------------hcCCeEE-eeC
Confidence 99999999999988876433456889999988875 5566668999999999876 6889985 556
Q ss_pred CCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 014834 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHG----IVESLFRRFTENGMSEDLAYKNTVECI 342 (417)
Q Consensus 267 ~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA----~iea~~d~~v~~Gl~~e~A~~~~~q~~ 342 (417)
...++++.+.+..+|..+|... +..++.++..++++|+.|+ +++++.+.+++.|+|+++|++++.|++
T Consensus 139 ~~~~~~~~~~v~~lf~~~G~~~--------~~~e~~~~~~~a~~gs~pa~~~~~~~a~~~~~~~~Gl~~~~a~~~~~~~~ 210 (245)
T PRK07634 139 QSVNETHKETLQLILKGIGTSQ--------LCTEEEVHQLTAVTGSAPAFLYYFAESLIEATKSYGVDEETAKHLVIQMI 210 (245)
T ss_pred CCCCHHHHHHHHHHHHhCCCEE--------EECHHHcchHHhhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 7788899999999999999762 2334557778999999999 488899999999999999999999999
Q ss_pred HHHHHHHHHHhcH-HHHHhcccCchh
Q 014834 343 TGIISKIISTQGM-LAVYNSFSGEDK 367 (417)
Q Consensus 343 ~~g~~~li~e~G~-~~l~~~vss~~~ 367 (417)
. |.++|+.+.+- ..|+|+||||.-
T Consensus 211 ~-g~~~~~~~~~~~~~l~~~v~spgG 235 (245)
T PRK07634 211 S-GSASMLEQTQDPANLREQVTTPGG 235 (245)
T ss_pred H-HHHHHHhCCCCHHHHHHhCCCCCh
Confidence 9 99999987433 999999999963
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=231.24 Aligned_cols=219 Identities=16% Similarity=0.189 Sum_probs=183.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc----EEEEE-ecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVG-LRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~----~ViVg-~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
+||+|||+|+||.+|+++|+++ |+ +|+++ +|+. ...+.+.+.|+.. ..++.|+++++|+||+++
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~------g~~~~~~i~v~~~r~~-~~~~~~~~~g~~~----~~~~~e~~~~aDvVil~v 69 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVAS------GVVPPSRISTADDSNP-ARRDVFQSLGVKT----AASNTEVVKSSDVIILAV 69 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHC------CCCCcceEEEEeCCCH-HHHHHHHHcCCEE----eCChHHHHhcCCEEEEEE
Confidence 5799999999999999999998 87 77777 5543 4455666778865 568889999999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEE-EEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEee
Q 014834 187 SDAAQADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiL-i~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav 265 (417)
||+...++++++.+.++++++| ++++|+++..+.. ..+.. +++++|||.|... |.+++. ++.
T Consensus 70 ~~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~---~~~~~-~vvr~mP~~~~~~------------~~~~~~-l~~ 132 (266)
T PLN02688 70 KPQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQE---WAGGR-RVVRVMPNTPCLV------------GEAASV-MSL 132 (266)
T ss_pred CcHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHH---HcCCC-CEEEECCCcHHHH------------hCceEE-EEe
Confidence 9999999999998889898864 5789998776654 33333 7999999999887 567777 555
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHH
Q 014834 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHG----IVESLFRRFTENGMSEDLAYKNTVEC 341 (417)
Q Consensus 266 ~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA----~iea~~d~~v~~Gl~~e~A~~~~~q~ 341 (417)
....+.++.+.+..|+..+|.. + +..++.|+..++++|++|+ +++++.+++++.|+++++|++.+.++
T Consensus 133 ~~~~~~~~~~~v~~l~~~~G~~--~------~~~e~~~d~~~~~~g~g~a~~~~~~~a~~ea~~~~Gl~~~~a~~~~~~~ 204 (266)
T PLN02688 133 GPAATADDRDLVATLFGAVGKI--W------VVDEKLLDAVTGLSGSGPAYIFLAIEALADGGVAAGLPRDVALSLAAQT 204 (266)
T ss_pred CCCCCHHHHHHHHHHHHhCCCE--E------EeCHHHcchhHhhhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 7777889999999999999962 2 2345678888999999999 47899999999999999999999999
Q ss_pred HHHHHHHHHHHhcH--HHHHhcccCchh
Q 014834 342 ITGIISKIISTQGM--LAVYNSFSGEDK 367 (417)
Q Consensus 342 ~~~g~~~li~e~G~--~~l~~~vss~~~ 367 (417)
+. ++++|+.++|. ..|++.|++|.-
T Consensus 205 ~~-gs~~l~~~~~~~~~~l~~~v~spgG 231 (266)
T PLN02688 205 VL-GAAKMVLETGKHPGQLKDMVTSPGG 231 (266)
T ss_pred HH-HHHHHHHhcCCCHHHHHHhCCCCch
Confidence 99 99999999888 999999999953
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-27 Score=230.40 Aligned_cols=218 Identities=15% Similarity=0.176 Sum_probs=178.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc----EEEEEecCChhhHHHHHHc-CceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~----~ViVg~r~~s~s~~~A~~~-G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
++|+|||+|+||.+++.+|.++ |. +|.+++|+.++....+.+. |+.. ..++.++++++|+||+++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~------g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~----~~~~~~~~~~aDiVilav 70 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLES------GAVKPSQLTITNRTPAKAYHIKERYPGIHV----AKTIEEVISQSDLIFICV 70 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCCCcceEEEECCCHHHHHHHHHHcCCeEE----ECCHHHHHHhCCEEEEec
Confidence 4799999999999999999988 73 6777777644433333333 6654 467888899999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEee
Q 014834 187 SDAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiLi-~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav 265 (417)
||+...++++++.++++++++|+ +++|+++..++. .++ ..++++|||+|... +.|.+. ++.
T Consensus 71 ~p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~---~~~--~~~~r~~p~~~~~~------------~~G~t~-~~~ 132 (273)
T PRK07680 71 KPLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLET---LVP--CQVARIIPSITNRA------------LSGASL-FTF 132 (273)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcC--CCEEEECCChHHHH------------hhccEE-Eee
Confidence 99999999999999998888655 777898877765 333 36899999988654 367776 444
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHH----HHHHHHHHHHH-cCCCHHHHHHHHHH
Q 014834 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHG----IVESLFRRFTE-NGMSEDLAYKNTVE 340 (417)
Q Consensus 266 ~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA----~iea~~d~~v~-~Gl~~e~A~~~~~q 340 (417)
....+.+..+.+..++..+|.. .+..+++++..+.++|++|+ +++++.+.+++ .|+|+++|++++.+
T Consensus 133 g~~~~~~~~~~~~~ll~~~G~~--------~~i~e~~~~~~~~l~gs~pa~~~~~~~al~~~~~~~~Gl~~~~a~~~~~~ 204 (273)
T PRK07680 133 GSRCSEEDQQKLERLFSNISTP--------LVIEEDITRVSSDIVSCGPAFFSYLLQRFIDAAVEETNISKEEATTLASE 204 (273)
T ss_pred CCCCCHHHHHHHHHHHHcCCCE--------EEEChHhcchhhhhccchHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 6667778889999999999954 24456778888999999999 47889999998 89999999999999
Q ss_pred HHHHHHHHHHHHhcH--HHHHhcccCch
Q 014834 341 CITGIISKIISTQGM--LAVYNSFSGED 366 (417)
Q Consensus 341 ~~~~g~~~li~e~G~--~~l~~~vss~~ 366 (417)
++. |.++|+.+++. ..|+|+||||.
T Consensus 205 ~~~-G~~~l~~~~~~~~~~l~~~v~spg 231 (273)
T PRK07680 205 MLI-GMGKLLEKGLYTLPTLQEKVCVKG 231 (273)
T ss_pred HHH-HHHHHHHhcCCCHHHHHHhCCCCC
Confidence 999 99999999886 99999999996
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-26 Score=223.04 Aligned_cols=222 Identities=16% Similarity=0.203 Sum_probs=181.7
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCC---cEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccC
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD---IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G---~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavp 187 (417)
|+||+|||+|+||.+++..|.++ | .+|.+++|+.++..+.....|+.. ..+..++++++|+||+++|
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~------g~~~~~v~v~~r~~~~~~~~~~~~g~~~----~~~~~~~~~~advVil~v~ 71 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLAS------GVPAKDIIVSDPSPEKRAALAEEYGVRA----ATDNQEAAQEADVVVLAVK 71 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhC------CCCcceEEEEcCCHHHHHHHHHhcCCee----cCChHHHHhcCCEEEEEcC
Confidence 58999999999999999999988 7 577777776444333333347654 5678888899999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeecC
Q 014834 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~ 267 (417)
|....++++++.+++ +..+|++++|++...++. .++.+.+++++|||.|... |.|++. +++..
T Consensus 72 ~~~~~~v~~~l~~~~-~~~vvs~~~gi~~~~l~~---~~~~~~~iv~~~P~~p~~~------------~~~~~~-i~~~~ 134 (267)
T PRK11880 72 PQVMEEVLSELKGQL-DKLVVSIAAGVTLARLER---LLGADLPVVRAMPNTPALV------------GAGMTA-LTANA 134 (267)
T ss_pred HHHHHHHHHHHHhhc-CCEEEEecCCCCHHHHHH---hcCCCCcEEEecCCchHHH------------cCceEE-EecCC
Confidence 999999999998887 334567999998776664 4555678999999999765 567776 56677
Q ss_pred CCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 014834 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHG----IVESLFRRFTENGMSEDLAYKNTVECIT 343 (417)
Q Consensus 268 dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA----~iea~~d~~v~~Gl~~e~A~~~~~q~~~ 343 (417)
..+.++.+.+..|+..+|....+ ..++.++..++++|++|+ +++++.+.+++.|+|+++|.+++.+++.
T Consensus 135 ~~~~~~~~~v~~l~~~lG~~~~~-------~~e~~~d~~~a~~~~~pa~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~ 207 (267)
T PRK11880 135 LVSAEDRELVENLLSAFGKVVWV-------DDEKQMDAVTAVSGSGPAYVFLFIEALADAGVKLGLPREQARKLAAQTVL 207 (267)
T ss_pred CCCHHHHHHHHHHHHhCCeEEEE-------CChHhcchHHHHhcChHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 78899999999999999964222 224468899999999998 4788889999999999999999999999
Q ss_pred HHHHHHHHHhcH--HHHHhcccCchh
Q 014834 344 GIISKIISTQGM--LAVYNSFSGEDK 367 (417)
Q Consensus 344 ~g~~~li~e~G~--~~l~~~vss~~~ 367 (417)
|.++++.++|. ..+++.|++|.-
T Consensus 208 -g~~~~~~~~~~~~~~l~~~v~tpgG 232 (267)
T PRK11880 208 -GAAKLLLESGEHPAELRDNVTSPGG 232 (267)
T ss_pred -HHHHHHHhcCCCHHHHHHhCCCCcH
Confidence 99999999888 999999999953
|
|
| >PF01450 IlvC: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR000506 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.3e-28 Score=215.65 Aligned_cols=119 Identities=25% Similarity=0.408 Sum_probs=106.8
Q ss_pred hhhhhhhhccccchhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhcccCchhhhhhhh
Q 014834 294 LEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKA 373 (417)
Q Consensus 294 f~~e~~~dl~ge~t~L~G~~pA~iea~~d~~v~~Gl~~e~A~~~~~q~~~~g~~~li~e~G~~~l~~~vss~~~~~~~~~ 373 (417)
|++|+++||||||++|||+++++++++||.+|++|++||.||++++|++. .|+++|+++|+.+|+++|| +|++||.+
T Consensus 1 F~~E~~sDLfGEq~vL~Ggv~~lv~~~Fe~lve~G~~pE~Ay~e~~~e~~-lI~dli~~~Gi~~M~~~iS--~TAeyG~~ 77 (145)
T PF01450_consen 1 FKEETESDLFGEQAVLCGGVHALVEAGFETLVEAGYSPEIAYFECLHETK-LIVDLIYEGGIYGMYDSIS--DTAEYGAY 77 (145)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHTT--HHHHHHHTHHHHH-HHHHHHHHHHHHHHHHTS---HHHHHHHH
T ss_pred ChHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHHccHHHHHHhcC--CHHHhHHH
Confidence 68899999999999999999999999999999999999999999999966 9999999999999999999 88999998
Q ss_pred hhc-c-ChhHHHHHHHHHHhhccChHHHHHHHcCCccccccccc
Q 014834 374 YSA-S-YYPCMEILYECYEDVAAGSEIRSVVLAGRRFYVSSYRL 415 (417)
Q Consensus 374 ~~~-~-~~~~~~~m~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~ 415 (417)
..+ + ..++++.|+++|++||+|+|+|+|+.+++..++..-.|
T Consensus 78 ~~~~r~~~~~k~~m~~~l~~I~~G~fak~~i~e~~~g~~~l~~~ 121 (145)
T PF01450_consen 78 TWGPRIIEAVKPLMKEILEDIQSGEFAKEWIEENQAGDPRLNAM 121 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHhcCCCHHHHHH
Confidence 443 3 46788999999999999999999999999888775444
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine []. The enzyme forms a tetramer of similar but non-identical chains, and requires magnesium as a cofactor.; GO: 0004455 ketol-acid reductoisomerase activity, 0009082 branched chain family amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 1NP3_C 1YRL_C 3FR8_B 3FR7_A. |
| >TIGR00112 proC pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-25 Score=216.20 Aligned_cols=198 Identities=18% Similarity=0.242 Sum_probs=170.8
Q ss_pred cEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCchHHHHHHHHHhcCCCCcE-EEEecCchhhhh
Q 014834 141 IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHL 219 (417)
Q Consensus 141 ~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~~~~Vl~eI~~~lk~gai-Li~a~G~~i~~~ 219 (417)
.+|++++|+.++..+.+.+.|+.. ..++.++++++|+|||++||+...++++++.+.+.++++ |++++|+++..+
T Consensus 10 ~~I~v~~R~~e~~~~l~~~~g~~~----~~~~~e~~~~aDiIiLaVkP~~i~~vl~~l~~~~~~~~~ivS~~agi~~~~l 85 (245)
T TIGR00112 10 YDIIVINRSPEKLAALAKELGIVA----SSDAQEAVKEADVVFLAVKPQDLEEVLSELKSEKGKDKLLISIAAGVTLEKL 85 (245)
T ss_pred CeEEEEcCCHHHHHHHHHHcCcEE----eCChHHHHhhCCEEEEEeCHHHHHHHHHHHhhhccCCCEEEEecCCCCHHHH
Confidence 378888887655555666678765 567889999999999999999999999999988877765 569999999888
Q ss_pred hhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhh
Q 014834 220 QSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYK 299 (417)
Q Consensus 220 ~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~ 299 (417)
+. .++.+.+++|+|||+|... |+|++. ++.+.+++.++.+.+..||..+|.. .++.
T Consensus 86 ~~---~~~~~~~ivR~mPn~~~~~------------~~g~t~-~~~~~~~~~~~~~~v~~lf~~~G~~--------~~v~ 141 (245)
T TIGR00112 86 SQ---LLGGTRRVVRVMPNTPAKV------------GAGVTA-IAANANVSEEDRALVLALFKAVGEV--------VELP 141 (245)
T ss_pred HH---HcCCCCeEEEECCChHHHH------------hCCeEE-EecCCCCCHHHHHHHHHHHHhCCCE--------EEEC
Confidence 75 5566668999999999988 789999 6668889999999999999999975 1344
Q ss_pred hhccccchhhhchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcH--HHHHhcccCchh
Q 014834 300 SDIFGERGILLGAVHG----IVESLFRRFTENGMSEDLAYKNTVECITGIISKIISTQGM--LAVYNSFSGEDK 367 (417)
Q Consensus 300 ~dl~ge~t~L~G~~pA----~iea~~d~~v~~Gl~~e~A~~~~~q~~~~g~~~li~e~G~--~~l~~~vss~~~ 367 (417)
++.|+..++++||+|| +++++.+.+++.|+++++|.+++.|++. |.++|+.++|. ..|++.|+||.-
T Consensus 142 E~~~~~~talsgsgPA~~~~~~~al~~~~v~~Gl~~~~A~~lv~~~~~-G~a~l~~~~~~~~~~l~~~v~spgG 214 (245)
T TIGR00112 142 EALMDAVTALSGSGPAYVFLFIEALADAGVKQGLPRELALELAAQTVK-GAAKLLEESGEHPALLKDQVTSPGG 214 (245)
T ss_pred HHHcchHHhhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHhcCCCHHHHHHcCCCCcH
Confidence 6789999999999999 4899999999999999999999999999 99999999977 999999999963
|
This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs. |
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.9e-25 Score=210.80 Aligned_cols=216 Identities=16% Similarity=0.178 Sum_probs=164.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc---EEEEEecCChhhHHHHHHc-CceecCCCcCCHHhhcCcCCEEEEccC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~---~ViVg~r~~s~s~~~A~~~-G~~~~~~~~~s~~Ea~~~ADIViLavp 187 (417)
+||||||+|+||.+++++|++. |+ .+.+++|+.++..+.+... |+.. +.++.++++++|+||+++|
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~------g~~~~~i~v~~r~~~~~~~l~~~~~~~~~----~~~~~~~~~~aDvVilav~ 70 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTS------PADVSEIIVSPRNAQIAARLAERFPKVRI----AKDNQAVVDRSDVVFLAVR 70 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhC------CCChheEEEECCCHHHHHHHHHHcCCceE----eCCHHHHHHhCCEEEEEeC
Confidence 4799999999999999999988 75 3456666544444444444 4543 5688899999999999999
Q ss_pred CchHHHHHHHHHhcCCCCcE-EEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeec
Q 014834 188 DAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~gai-Li~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~ 266 (417)
|+...++++++. ++++++ |.+++|+++..++. .++....++++|||+|... +.|++.+ +..
T Consensus 71 p~~~~~vl~~l~--~~~~~~vis~~ag~~~~~l~~---~~~~~~~~~r~~P~~~~a~------------~~g~t~~-~~~ 132 (258)
T PRK06476 71 PQIAEEVLRALR--FRPGQTVISVIAATDRAALLE---WIGHDVKLVRAIPLPFVAE------------RKGVTAI-YPP 132 (258)
T ss_pred HHHHHHHHHHhc--cCCCCEEEEECCCCCHHHHHH---HhCCCCCEEEECCCChhhh------------CCCCeEe-cCC
Confidence 998899998762 567775 45889999888775 4455568999999998876 5788884 322
Q ss_pred CCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 014834 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVECITGII 346 (417)
Q Consensus 267 ~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA~iea~~d~~v~~Gl~~e~A~~~~~q~~~~g~ 346 (417)
.+.+..++..+|....+. +|...|+|+..++..+..-.+++++.+.+++.|+|+++|++.+.+++. |.
T Consensus 133 -------~~~~~~l~~~lG~~~~~~----~e~~~d~~~a~~s~~a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~-G~ 200 (258)
T PRK06476 133 -------DPFVAALFDALGTAVECD----SEEEYDLLAAASALMATYFGILETATGWLEEQGLKRQKARAYLAPLFA-SL 200 (258)
T ss_pred -------HHHHHHHHHhcCCcEEEC----ChHhccceeehhccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HH
Confidence 257899999999763222 244555555443222222236888999999999999999999999999 99
Q ss_pred HHH-HHHhcH--HHHHhcccCchh
Q 014834 347 SKI-ISTQGM--LAVYNSFSGEDK 367 (417)
Q Consensus 347 ~~l-i~e~G~--~~l~~~vss~~~ 367 (417)
++| +.+++. ..|+|+||||.-
T Consensus 201 ~~l~~~~~~~~~~~l~~~v~spgG 224 (258)
T PRK06476 201 AQDAVRSTKTDFSALSREFSTKGG 224 (258)
T ss_pred HHHHHhcCCCCHHHHHHhCCCCCc
Confidence 999 677777 899999999953
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.7e-20 Score=188.88 Aligned_cols=233 Identities=14% Similarity=0.075 Sum_probs=166.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChh-hHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~-s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~ 190 (417)
++|+|||+|+||.++|++|++. |+++.++.++..+ ....+...|+. +....++++++++||+||+|+|+..
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~------G~~v~i~~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~~~aDlVilavP~~~ 72 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAA------GPDVFIIGYDPSAAQLARALGFGVI--DELAADLQRAAAEADLIVLAVPVDA 72 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHhcCCCC--cccccCHHHHhcCCCEEEEeCCHHH
Confidence 5899999999999999999999 9887777655332 22223334443 2223567889999999999999999
Q ss_pred HHHHHHHHHh-cCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeecCCC
Q 014834 191 QADNYEKIFS-CMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (417)
Q Consensus 191 ~~~Vl~eI~~-~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~dv 269 (417)
..++++++.+ .++++.+|+++++++....+.....++...++|..|| +++.. +..+..+......|.++++++....
T Consensus 73 ~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HP-MaG~e-~sG~~aa~~~lf~g~~~il~~~~~~ 150 (359)
T PRK06545 73 TAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHP-MAGSH-KSGVAAARADLFENAPWVLTPDDHT 150 (359)
T ss_pred HHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCC-cCcCc-hhhHHHhcHHHHCCCcEEEecCCCC
Confidence 9999999988 4899999999999975322211112455678999999 55543 2233333333345677889988888
Q ss_pred CHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Q 014834 270 DGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVECITGIISKI 349 (417)
Q Consensus 270 sgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA~iea~~d~~v~~Gl~~e~A~~~~~q~~~~g~~~l 349 (417)
+.++.+.++.++..+|.. .+.. ..+..+..+++.+.+|.++-..+ +...|.+++.++.++.+.+. .++++
T Consensus 151 ~~~~~~~v~~l~~~lGa~-~v~~------~~~~HD~~~A~vshlPh~ia~al--~~~~~~~~~~~~~la~~gfr-d~tRi 220 (359)
T PRK06545 151 DPDAVAELKDLLSGTGAK-FVVL------DAEEHDRAVALVSHLPHILASSL--AARLAGEHPLALRLAAGGFR-DITRI 220 (359)
T ss_pred CHHHHHHHHHHHHHcCCE-EEEC------CHHHHhHHHhHhccHHHHHHHHH--HHhhccCchHHHhhhccccc-CCccc
Confidence 899999999999999974 2222 22235677899999999766544 56668889999999999888 77777
Q ss_pred HHHhcHHHHHhcccCc
Q 014834 350 ISTQGMLAVYNSFSGE 365 (417)
Q Consensus 350 i~e~G~~~l~~~vss~ 365 (417)
.. +.-.-.+|.++++
T Consensus 221 a~-~~p~~w~di~~~N 235 (359)
T PRK06545 221 AS-SDPGMWRDILESN 235 (359)
T ss_pred cC-CCHHHHHHHHHHh
Confidence 63 2234445555443
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-17 Score=163.85 Aligned_cols=253 Identities=15% Similarity=0.159 Sum_probs=172.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEe-cCChhhHHHHHHcCceecCCCcCCH-HhhcCcCCEEEEccCCc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGL-RKGSRSFAEARAAGFTEENGTLGDI-YETISGSDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~-r~~s~s~~~A~~~G~~~~~~~~~s~-~Ea~~~ADIViLavpd~ 189 (417)
++|+|||+|.||+++|+.|+.. |+.+.+.. +......+.+.+.|+.. ....+. .+.+.++|+||++||..
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~------g~~v~i~g~d~~~~~~~~a~~lgv~d--~~~~~~~~~~~~~aD~VivavPi~ 75 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEA------GLVVRIIGRDRSAATLKAALELGVID--ELTVAGLAEAAAEADLVIVAVPIE 75 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHc------CCeEEEEeecCcHHHHHHHhhcCccc--ccccchhhhhcccCCEEEEeccHH
Confidence 7999999999999999999999 99774444 44445667777788873 222333 67888999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchh-HHHHHhhcccccCCCceEEEeecCC
Q 014834 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPS-VRRLYVQGKEINGAGINSSFAVHQD 268 (417)
Q Consensus 190 ~~~~Vl~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~-vr~ly~~G~~~~G~Gv~~liav~~d 268 (417)
+..++++++.|++++|++|++..+++-.-++.-....|++++||..||. -|+. ...+ .++-.+++|+.+.
T Consensus 76 ~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM-~G~~~~~~l--------f~~~~~vltp~~~ 146 (279)
T COG0287 76 ATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPM-FGPEADAGL--------FENAVVVLTPSEG 146 (279)
T ss_pred HHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCCC-CCCcccccc--------cCCCEEEEcCCCC
Confidence 9999999999999999999999998643222222355665689999994 4552 2233 3567788999998
Q ss_pred CCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Q 014834 269 VDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVECITGIISK 348 (417)
Q Consensus 269 vsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA~iea~~d~~v~~Gl~~e~A~~~~~q~~~~g~~~ 348 (417)
.+.+.++.+.+++.++|. +++.++.++|+.. | +.+++.-+.+..++...+-+.+....++.+++. ++-+
T Consensus 147 ~~~~~~~~~~~~~~~~ga-~~v~~~~eeHD~~--~---a~vshLpH~~a~al~~~~~~~~~~~~~~~~~as-----~~fr 215 (279)
T COG0287 147 TEKEWVEEVKRLWEALGA-RLVEMDAEEHDRV--M---AAVSHLPHAAALALANALAKLETEELLVLKLAS-----GGFR 215 (279)
T ss_pred CCHHHHHHHHHHHHHcCC-EEEEcChHHHhHH--H---HHHHHHHHHHHHHHHHHHHhcCcchhHHHhccc-----cchh
Confidence 888999999999999994 6777777777763 3 446666666777777777666653333444333 2222
Q ss_pred HHHHhcH--HHHHhcccCchhhh-hhhhhhccChhHHHHHHHHHHhhccChH
Q 014834 349 IISTQGM--LAVYNSFSGEDKKE-FEKAYSASYYPCMEILYECYEDVAAGSE 397 (417)
Q Consensus 349 li~e~G~--~~l~~~vss~~~~~-~~~~~~~~~~~~~~~m~~~~~~v~~g~~ 397 (417)
++.+--- ..||..++.-|+.. ... -...++.+.++.+.|++++.
T Consensus 216 d~tRia~~~P~m~~dI~~~N~~~~l~~-----i~~~~~~l~~l~~~i~~~d~ 262 (279)
T COG0287 216 DITRIASSDPEMYADIQLSNKEALLEA-----IERFAKSLDELKELIENGDA 262 (279)
T ss_pred hHHHHHcCChHHHHHHHHhCcHHHHHH-----HHHHHHHHHHHHHHHhcCcH
Confidence 2211111 33444443222210 111 12344566677777777774
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-17 Score=163.14 Aligned_cols=187 Identities=16% Similarity=0.177 Sum_probs=134.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~~ 191 (417)
+||+|||+|+||.++|+.|++. |++|.+++++ ....+.+.+.|... . ..+..++++++|+||+|+|+...
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~------g~~V~~~d~~-~~~~~~a~~~g~~~--~-~~~~~~~~~~aDlVilavp~~~~ 70 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSL------GHTVYGVSRR-ESTCERAIERGLVD--E-ASTDLSLLKDCDLVILALPIGLL 70 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHC------CCEEEEEECC-HHHHHHHHHCCCcc--c-ccCCHhHhcCCCEEEEcCCHHHH
Confidence 4899999999999999999999 9998877665 44567777777642 1 22333578999999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeecCCCCH
Q 014834 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDG 271 (417)
Q Consensus 192 ~~Vl~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~dvsg 271 (417)
.++++++.++++++.+|+++++++...++... .. ...+|..||.. |.. ...++.+......|.++++++....+.
T Consensus 71 ~~~~~~l~~~l~~~~ii~d~~Svk~~~~~~~~-~~--~~~~v~~HPm~-G~~-~~g~~~a~~~lf~g~~~~l~p~~~~~~ 145 (279)
T PRK07417 71 LPPSEQLIPALPPEAIVTDVGSVKAPIVEAWE-KL--HPRFVGSHPMA-GTA-ESGVEAGQRGLFKNRPWVLTPTENTDL 145 (279)
T ss_pred HHHHHHHHHhCCCCcEEEeCcchHHHHHHHHH-Hh--hCCceeeCCcC-CCC-cchHHHhhHHHhCCCcEEEccCCCCCH
Confidence 99999999999999999999998764443211 11 12589999943 221 112233322233567888998888888
Q ss_pred HHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHHHHHHH
Q 014834 272 RATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESL 320 (417)
Q Consensus 272 ea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA~iea~ 320 (417)
++.+.+..++..+|.. ++..+.+ ..+..+.+++.+|.++-..
T Consensus 146 ~~~~~v~~l~~~lG~~-~v~~~~~------~hD~~~a~~shlp~~~a~~ 187 (279)
T PRK07417 146 NALAIVEELAVSLGSK-IYTADPE------EHDRAVALISHLPVMVSAA 187 (279)
T ss_pred HHHHHHHHHHHHcCCE-EEEcCHH------HHHHHHHHHcchHHHHHHH
Confidence 9999999999999964 3333322 2455577888888876543
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3e-17 Score=180.11 Aligned_cols=229 Identities=14% Similarity=0.087 Sum_probs=164.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~ 189 (417)
+||+|||+|+||.++++.|+.. |+ +|++++++. ...+.+.+.|+.. ....+..++++++|+||+++|++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~------G~~~~V~~~d~~~-~~~~~a~~~g~~~--~~~~~~~~~~~~aDvVilavp~~ 74 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRER------GLAREVVAVDRRA-KSLELAVSLGVID--RGEEDLAEAVSGADVIVLAVPVL 74 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc------CCCCEEEEEECCh-hHHHHHHHCCCCC--cccCCHHHHhcCCCEEEECCCHH
Confidence 7999999999999999999998 73 677766654 3456677788741 12456788899999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEecCch---hhhhhhcccCCCCCccEEEeccCCCch--hHHHHHhhcccccCCCceEEEe
Q 014834 190 AQADNYEKIFSCMKPNSILGLSHGFL---LGHLQSIGLDFPKNIGVIAVCPKGMGP--SVRRLYVQGKEINGAGINSSFA 264 (417)
Q Consensus 190 ~~~~Vl~eI~~~lk~gaiLi~a~G~~---i~~~~~~~i~~~~dv~VI~v~Pntpg~--~vr~ly~~G~~~~G~Gv~~lia 264 (417)
...++++++.++++++.+|+++++++ +..+.+ .++. ..+++|||+|.. .. ..+.........|-++.++
T Consensus 75 ~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~---~~~~--~~~r~~~~hPm~G~~~-~g~~~a~~~l~~~~~~~~~ 148 (735)
T PRK14806 75 AMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARA---VFGE--LPAGFVPGHPIAGSEK-SGVHAANADLFRNHKVILT 148 (735)
T ss_pred HHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHH---hccc--cCCeEEecCCcCcCCc-chhhhhhhHHhCCCeEEEE
Confidence 88999999999999999999999986 444443 2332 245667777733 21 0111000011123456678
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 014834 265 VHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHG-IVESLFRRFTENGMSEDLAYKNTVECIT 343 (417)
Q Consensus 265 v~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA-~iea~~d~~v~~Gl~~e~A~~~~~q~~~ 343 (417)
+....+.++.+.+..++..+|.. ++. ..++.++..++++|++|+ +.-++.+.+.+.|.. +.+++++.+.+.
T Consensus 149 ~~~~~~~~~~~~~~~l~~~~G~~-~~~------~~~~~hD~~~a~~~~~ph~~~~~l~~~l~~~~~~-~~~~~~a~~~f~ 220 (735)
T PRK14806 149 PLAETDPAALARVDRLWRAVGAD-VLH------MDVAHHDEVLAATSHLPHLLAFSLVDQLANREDN-LDIFRYAAGGFR 220 (735)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCE-EEE------cCHHHHhHHHHHhcchHHHHHHHHHHHHhhcCCh-hHHHhhhccchh
Confidence 88888889999999999999964 222 233457778999999999 777888888887764 468899998887
Q ss_pred HHHHHHHHHhcHHHHHhcccCc
Q 014834 344 GIISKIISTQGMLAVYNSFSGE 365 (417)
Q Consensus 344 ~g~~~li~e~G~~~l~~~vss~ 365 (417)
+++++. .+.-...+|.++++
T Consensus 221 -~~tRia-~~~p~~~~di~~~n 240 (735)
T PRK14806 221 -DFTRIA-ASDPVMWHDIFLAN 240 (735)
T ss_pred -cccccc-cCCHHHHHHHHHHh
Confidence 777777 33445566666655
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.8e-16 Score=162.77 Aligned_cols=198 Identities=16% Similarity=0.161 Sum_probs=147.5
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 014834 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~ 190 (417)
+||+||| +|+||.++|+.|++. |++|++++++.+...+.+.+.|+.. ..+..+++.++|+||+++|+..
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~------G~~V~v~~r~~~~~~~~a~~~gv~~----~~~~~e~~~~aDvVIlavp~~~ 70 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEK------GFEVIVTGRDPKKGKEVAKELGVEY----ANDNIDAAKDADIVIISVPINV 70 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHC------CCEEEEEECChHHHHHHHHHcCCee----ccCHHHHhccCCEEEEecCHHH
Confidence 5899997 899999999999999 9998888876554456777778764 4578889999999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCch---hhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeecC
Q 014834 191 QADNYEKIFSCMKPNSILGLSHGFL---LGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (417)
Q Consensus 191 ~~~Vl~eI~~~lk~gaiLi~a~G~~---i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~ 267 (417)
..++++++.++++++++|+++++++ ...+.+ .+|++.++|..||.. |+.. ..| .|-.+++++..
T Consensus 71 ~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~---~~~~~~~~V~~HPma-Gp~~-~~~--------~g~~~il~p~~ 137 (437)
T PRK08655 71 TEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEE---YAPEGVEILPTHPMF-GPRT-PSL--------KGQVVILTPTE 137 (437)
T ss_pred HHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHH---hcCCCCEEEEcCCCC-CCCC-ccc--------CCCEEEEecCC
Confidence 9999999999999999999888753 233433 456678999999842 2221 112 34566678777
Q ss_pred CCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhh-hchHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 014834 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGIL-LGAVHGIVESLFRRFTENGMSEDLAYKNTV 339 (417)
Q Consensus 268 dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L-~G~~pA~iea~~d~~v~~Gl~~e~A~~~~~ 339 (417)
..++++.+.+..++..+|.. ++.++.+++++ ..++ ++..+.+.-++...+.+.|++++.+..++.
T Consensus 138 ~~~~~~~~~v~~ll~~~G~~-v~~~~~e~HD~------~~a~vs~lph~~a~al~~~l~~~g~~~~~~~~~a~ 203 (437)
T PRK08655 138 KRSNPWFDKVKNFLEKEGAR-VIVTSPEEHDR------IMSVVQGLTHFAYISIASTLKRLGVDIKESRKFAS 203 (437)
T ss_pred CCCHHHHHHHHHHHHHcCCE-EEECCHHHHHH------HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhcC
Confidence 77888999999999999964 44444344433 2334 444444566677778888999998876655
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.9e-16 Score=152.44 Aligned_cols=195 Identities=17% Similarity=0.137 Sum_probs=131.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~ 189 (417)
+||+|||+|+||.++|++|++. |+ +|++++++ ....+.+.+.|+... ..+.+++. ++|+||+++|+.
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~------g~~~~v~~~d~~-~~~~~~~~~~g~~~~---~~~~~~~~-~aD~Vilavp~~ 69 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEK------GLISKVYGYDHN-ELHLKKALELGLVDE---IVSFEELK-KCDVIFLAIPVD 69 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhc------CCCCEEEEEcCC-HHHHHHHHHCCCCcc---cCCHHHHh-cCCEEEEeCcHH
Confidence 4899999999999999999998 75 56655554 444566777887521 34667765 499999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCC------CchhHHHHHhhcccccCCCceEEE
Q 014834 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKG------MGPSVRRLYVQGKEINGAGINSSF 263 (417)
Q Consensus 190 ~~~~Vl~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pnt------pg~~vr~ly~~G~~~~G~Gv~~li 263 (417)
...+++.++.+ ++++++|++++..+....+. .... ...++|+.||+. |......+| +|..+++
T Consensus 70 ~~~~~~~~l~~-l~~~~iv~d~gs~k~~i~~~-~~~~-~~~~~v~~hPmaG~e~~Gp~~a~~~l~--------~g~~~il 138 (275)
T PRK08507 70 AIIEILPKLLD-IKENTTIIDLGSTKAKIIES-VPKH-IRKNFIAAHPMAGTENSGPKAAIKGLY--------EGKVVVL 138 (275)
T ss_pred HHHHHHHHHhc-cCCCCEEEECccchHHHHHH-HHHh-cCCCEEecCCcCcCchhhHHhccHHHh--------CCCeEEE
Confidence 99999999999 99999888876654322211 0010 124799999984 333222333 3566767
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchh-hhchHHHHHHHHHHHHHHcCCCHHHHHH
Q 014834 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGI-LLGAVHGIVESLFRRFTENGMSEDLAYK 336 (417)
Q Consensus 264 av~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~-L~G~~pA~iea~~d~~v~~Gl~~e~A~~ 336 (417)
++..+.+.++.+.+..++..+|. +++.++.++++ .... +++..+.+..++.+.+. .+.+++....
T Consensus 139 ~~~~~~~~~~~~~v~~l~~~~G~-~~~~~~~~~hD------~~~a~vs~lph~~a~~l~~~~~-~~~~~~~~~~ 204 (275)
T PRK08507 139 CDVEKSGEKHQERAKEIFSGLGM-RIVYMDAKEHD------LHAAYISHLPHIISFALANTVL-KEEDERNIFD 204 (275)
T ss_pred ecCCCCCHHHHHHHHHHHHHhCC-EEEEeCHHHHH------HHHHHHhHHHHHHHHHHHHHHH-hcCChHHHHh
Confidence 87777788899999999999996 45554433332 2333 35555545555666654 4665555434
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.6e-16 Score=153.56 Aligned_cols=192 Identities=16% Similarity=0.156 Sum_probs=136.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~ 189 (417)
++|+|||+|+||.++++.|++. |+ +|++++++ ....+.+.+.|+.. ....+.+++++++|+||+++|+.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~------g~~~~V~~~dr~-~~~~~~a~~~g~~~--~~~~~~~~~~~~aDvViiavp~~ 77 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL------GLAGEIVGADRS-AETRARARELGLGD--RVTTSAAEAVKGADLVILCVPVG 77 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc------CCCcEEEEEECC-HHHHHHHHhCCCCc--eecCCHHHHhcCCCEEEECCCHH
Confidence 7999999999999999999988 75 77766665 34566777777631 12456778899999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeecCCC
Q 014834 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (417)
Q Consensus 190 ~~~~Vl~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~dv 269 (417)
...++++++.++++++.+|+++++++....+......++++.++..||-..... ..+..+......|.++++++....
T Consensus 78 ~~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~--~G~~~a~~~l~~g~~~~l~~~~~~ 155 (307)
T PRK07502 78 ASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPEGVHFIPGHPLAGTEH--SGPDAGFAELFENRWCILTPPEGT 155 (307)
T ss_pred HHHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhCCCCCeEEeCCCCCCCcc--cchhhcCHHHHCCCeEEEeCCCCC
Confidence 888999999999999999998888764333221113456678898899542111 011111111123566778877777
Q ss_pred CHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHHHHHHHH
Q 014834 270 DGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESLF 321 (417)
Q Consensus 270 sgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA~iea~~ 321 (417)
+.++.+.+..++..+|.. ++..+ .+..|..+++.+.+|.++-.++
T Consensus 156 ~~~~~~~~~~l~~~lG~~-~~~~~------~~~hD~~~A~~s~lph~~a~~l 200 (307)
T PRK07502 156 DPAAVARLTAFWRALGAR-VEEMD------PEHHDLVLAITSHLPHLIAYTI 200 (307)
T ss_pred CHHHHHHHHHHHHHcCCE-EEEcC------HHHHhHHHHHHhhHHHHHHHHH
Confidence 788999999999999974 22222 2235567889999999765544
|
|
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=2e-17 Score=171.39 Aligned_cols=108 Identities=16% Similarity=0.251 Sum_probs=93.7
Q ss_pred hhhhccccchhhhchHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhcccCchhhhhhhhhhc
Q 014834 298 YKSDIFGERGILLGAVH-GIVESLFRRFTENGMSEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSA 376 (417)
Q Consensus 298 ~~~dl~ge~t~L~G~~p-A~iea~~d~~v~~Gl~~e~A~~~~~q~~~~g~~~li~e~G~~~l~~~vss~~~~~~~~~~~~ 376 (417)
..+.-|=++++|+|.+. +.+++.||++|++|++||.||++++|+++ +|++||+|+|+.+|+++|| +|||||+|..
T Consensus 348 ~~~~~~~erG~Lm~a~~~~g~e~~FEtLveaGy~PE~AYfE~lhElk-LIvdLi~e~Gl~~M~~~iS--dTAeyG~y~~- 423 (487)
T PRK05225 348 ISEQEYFDKGVLMVAMVKAGVELAFETMVDSGIIEESAYYESLHELP-LIANTIARKRLYEMNVVIS--DTAEYGNYLF- 423 (487)
T ss_pred chhHHHHhhhhHHHHHHHhhhHHHHHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHhh--hHhhcCCccc-
Confidence 34444668899999765 78999999999999999999999999997 9999999999999999999 8999999843
Q ss_pred cChhHHHHHHHHHHhhccChHHHHHHHcCCccccc
Q 014834 377 SYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYVS 411 (417)
Q Consensus 377 ~~~~~~~~m~~~~~~v~~g~~~~~~~~~~~~~~~~ 411 (417)
...+.+.|+++|++||+|+|+|+| .+++...++
T Consensus 424 -g~~vi~~mk~~l~~Iq~G~fak~~-~e~~~g~~~ 456 (487)
T PRK05225 424 -SHAAVPLLKDFMATLQPGDLGKGL-PSNAVDNAQ 456 (487)
T ss_pred -ChHHHHHHHHHHHHcCCCHHHhhH-HhccCCcHH
Confidence 244557999999999999999999 887776544
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.5e-15 Score=147.02 Aligned_cols=165 Identities=16% Similarity=0.113 Sum_probs=124.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhc-CcCCEEEEccCCch
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~-~~ADIViLavpd~~ 190 (417)
++|+|||+|+||.++++.|++. |.+|++.+++. ..+.+.+.|+.. ..+.++++ .++|+||+|+|+..
T Consensus 37 ~kI~IIG~G~mG~slA~~L~~~------G~~V~~~d~~~--~~~~a~~~gv~~----~~~~~e~~~~~aDvVilavp~~~ 104 (304)
T PLN02256 37 LKIGIVGFGNFGQFLAKTFVKQ------GHTVLATSRSD--YSDIAAELGVSF----FRDPDDFCEEHPDVVLLCTSILS 104 (304)
T ss_pred CEEEEEeeCHHHHHHHHHHHhC------CCEEEEEECcc--HHHHHHHcCCee----eCCHHHHhhCCCCEEEEecCHHH
Confidence 7999999999999999999988 88888777653 245667778764 56777876 47999999999999
Q ss_pred HHHHHHHH-HhcCCCCcEEEEecCch---hhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeec
Q 014834 191 QADNYEKI-FSCMKPNSILGLSHGFL---LGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (417)
Q Consensus 191 ~~~Vl~eI-~~~lk~gaiLi~a~G~~---i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~ 266 (417)
..++++++ .++++++++|++.++++ +..+.. .++.+.++|++||+.....-... -.+.+.+++..
T Consensus 105 ~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~---~l~~~~~~V~~HPmaG~e~~~~~--------~~~~~~~~~~~ 173 (304)
T PLN02256 105 TEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQ---VLPEEFDILCTHPMFGPESGKGG--------WAGLPFVYDKV 173 (304)
T ss_pred HHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHH---hCCCCCeEEecCCCCCCCCCccc--------cCCCeEEEecc
Confidence 99999998 68899999988777653 344443 45667889999998865541111 13455555432
Q ss_pred ----CCCCHHHHHHHHHHHHHhCCCceeccchhhhhhh
Q 014834 267 ----QDVDGRATNVALGWSVALGSPFTFATTLEQEYKS 300 (417)
Q Consensus 267 ----~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~ 300 (417)
.+.++++.+.++.++..+|+ ++++.+.++|++.
T Consensus 174 ~i~~~~~~~~~~~~l~~l~~~lGa-~v~~~~~eeHD~~ 210 (304)
T PLN02256 174 RIGDEGEREARCERFLDIFEEEGC-RMVEMSCEEHDRY 210 (304)
T ss_pred eecCCCCCHHHHHHHHHHHHHCCC-EEEEeCHHHHhHH
Confidence 34567889999999999995 5777777777664
|
|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-14 Score=147.31 Aligned_cols=255 Identities=12% Similarity=0.144 Sum_probs=160.3
Q ss_pred CEEEEEcccch--------------------HHHHHHHHHhhhhhhcCCcEEEEEecCChh----hHHHHHHcCceecCC
Q 014834 112 NQIGVIGWGSQ--------------------GPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFAEARAAGFTEENG 167 (417)
Q Consensus 112 kkIgIIG~G~m--------------------G~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~----s~~~A~~~G~~~~~~ 167 (417)
+||.|-|.||| |.+||.+|.+. |++|++++++.+. ..+...+.|+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~a------G~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~--- 71 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEA------GHDVVLAEPNRSILSEELWKKVEDAGVKV--- 71 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhC------CCeEEEEECCHHHhhHHHHHHHHHCCCEE---
Confidence 46777788876 88999999999 9999988876432 344566778765
Q ss_pred CcCCHHhhcCcCCEEEEccCCch-HHHHHHHHHhcCCCCcEEEEecCchhhhh-hhcccCCCCCccEEEeccCCCchhHH
Q 014834 168 TLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFLLGHL-QSIGLDFPKNIGVIAVCPKGMGPSVR 245 (417)
Q Consensus 168 ~~~s~~Ea~~~ADIViLavpd~~-~~~Vl~eI~~~lk~gaiLi~a~G~~i~~~-~~~~i~~~~dv~VI~v~Pntpg~~vr 245 (417)
..+..+++++||+||+++|+.. ..++++++.++++++++|++++.+..... +.....++.....++++|..|+.+.
T Consensus 72 -asd~~eaa~~ADvVIlaVP~~~~v~~Vl~~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~- 149 (342)
T PRK12557 72 -VSDDAEAAKHGEIHILFTPFGKKTVEIAKNILPHLPENAVICNTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVP- 149 (342)
T ss_pred -eCCHHHHHhCCCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEEecCCCHHHHHHHHHHHhcccccccCeeecCCcccc-
Confidence 5688899999999999999988 67899999999999999887776643322 1000122322234455555555431
Q ss_pred HHHhhcccccCCCceEEE----eecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHHH-HHH-
Q 014834 246 RLYVQGKEINGAGINSSF----AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGI-VES- 319 (417)
Q Consensus 246 ~ly~~G~~~~G~Gv~~li----av~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA~-iea- 319 (417)
|.+ +.|...+. +.....+.++.+.+..++.++|.. ++... .+..+....+...+.+. +.+
T Consensus 150 -----Gae--~g~l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~-v~~~~------~g~~~~vk~~~n~l~av~~a~~ 215 (342)
T PRK12557 150 -----GTP--QHGHYVIAGKTTNGTELATEEQIEKCVELAESIGKE-PYVVP------ADVVSAVADMGSLVTAVALSGV 215 (342)
T ss_pred -----ccc--cchheEEeCCCcccccCCCHHHHHHHHHHHHHcCCE-EEEeC------HHHHHHHHHHHHHHHHHHHHHH
Confidence 100 11222211 123344778999999999999963 22221 12333322222233331 111
Q ss_pred --HHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHhcHHHHHhcccCch----hh---hhhhhhhccChhHHHHHHHHH
Q 014834 320 --LFRRFTENGMSE-DLAYKNTVECITGIISKIISTQGMLAVYNSFSGED----KK---EFEKAYSASYYPCMEILYECY 389 (417)
Q Consensus 320 --~~d~~v~~Gl~~-e~A~~~~~q~~~~g~~~li~e~G~~~l~~~vss~~----~~---~~~~~~~~~~~~~~~~m~~~~ 389 (417)
.+..+.+.|..| +++.+.+.|++. ++++|+.++|++.|-+.+. |. ++ .|++.- ..-....+++++++
T Consensus 216 aE~~~l~~~~~~~p~~~~~~~~~~~~~-~~a~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 292 (342)
T PRK12557 216 LDYYSVGTKIIKAPKEMIEKQILMTLQ-TMASLVETSGVDGLLKALN-PELLLRSASSMHLLEKQ-KDLDAALEILENLD 292 (342)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHH-HHHHHHHHhChHHHHHhcC-HHHHhhhHhhCCcchhh-hhHHHHHHHHHHHH
Confidence 333445555555 778888999999 9999999999999988765 31 11 133310 01233457888888
Q ss_pred Hhhcc
Q 014834 390 EDVAA 394 (417)
Q Consensus 390 ~~v~~ 394 (417)
+++..
T Consensus 293 ~~~~~ 297 (342)
T PRK12557 293 EDLLK 297 (342)
T ss_pred HHHhh
Confidence 88743
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.1e-14 Score=140.94 Aligned_cols=214 Identities=12% Similarity=0.120 Sum_probs=142.1
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH-----cCceecC----------CCcCCHHhh
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----AGFTEEN----------GTLGDIYET 175 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~-----~G~~~~~----------~~~~s~~Ea 175 (417)
++||+|||+|+||.++|..|... |++|++++++.+ ..+.+.+ .|....+ ....+.+++
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~------g~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 76 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARK------GLQVVLIDVMEG-ALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAA 76 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhC------CCeEEEEECCHH-HHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHH
Confidence 58999999999999999999998 999888776543 2333322 1210000 013567788
Q ss_pred cCcCCEEEEccCCch--HHHHHHHHHhcCCCCcEE-EEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcc
Q 014834 176 ISGSDLVLLLISDAA--QADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (417)
Q Consensus 176 ~~~ADIViLavpd~~--~~~Vl~eI~~~lk~gaiL-i~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~ 252 (417)
+++||+||+++|++. ..+++.++.+.++++++| +.++|+.+..+.+ .++...+++++||+.|...
T Consensus 77 ~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~---~~~~~~~~ig~h~~~p~~~--------- 144 (311)
T PRK06130 77 VSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQ---AVTRPERFVGTHFFTPADV--------- 144 (311)
T ss_pred hccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHh---hcCCcccEEEEccCCCCcc---------
Confidence 999999999999986 457888888888888776 5888988776654 3444557999999999866
Q ss_pred cccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHHHHHHHHHHHHHcCCCHH
Q 014834 253 EINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSED 332 (417)
Q Consensus 253 ~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA~iea~~d~~v~~Gl~~e 332 (417)
+. ... +++....+.+..+.+..++..+|...++- +.+..-| ++.....+++.-++..+.+.|++++
T Consensus 145 ---~~-l~~-i~~g~~t~~~~~~~v~~l~~~~G~~~v~~-----~~d~~G~----i~nr~~~~~~~Ea~~l~~~g~~~~~ 210 (311)
T PRK06130 145 ---IP-LVE-VVRGDKTSPQTVATTMALLRSIGKRPVLV-----KKDIPGF----IANRIQHALAREAISLLEKGVASAE 210 (311)
T ss_pred ---Cc-eEE-EeCCCCCCHHHHHHHHHHHHHcCCEEEEE-----cCCCCCc----HHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 23 223 45566778899999999999999742111 0010011 1222333444445555667778998
Q ss_pred HHHHHHHHHH------HHHHHHHHHHhcHHHH
Q 014834 333 LAYKNTVECI------TGIISKIISTQGMLAV 358 (417)
Q Consensus 333 ~A~~~~~q~~------~~g~~~li~e~G~~~l 358 (417)
+......+.. . |--.++-..|+..+
T Consensus 211 ~id~~~~~~~g~~~~~~-Gp~~~~D~~Gl~~~ 241 (311)
T PRK06130 211 DIDEVVKWSLGIRLALT-GPLEQRDMNGLDVH 241 (311)
T ss_pred HHHHHHHhcCCCCccCC-CHHHHhhhhccchH
Confidence 8877654331 2 44555556666433
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.5e-14 Score=139.25 Aligned_cols=193 Identities=18% Similarity=0.194 Sum_probs=129.2
Q ss_pred HHHHHHhhhhhhcCC--cEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCchHHHHHHHHHhcCC
Q 014834 126 QAQNLRDSLAEAKSD--IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMK 203 (417)
Q Consensus 126 iA~~Lr~s~~~~~~G--~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~~~~Vl~eI~~~lk 203 (417)
+|+.|+++ | ++|+ +.+.+....+.|++.|+.. .. .+..++++++|+||||+|+....++++++.++++
T Consensus 1 ~A~aL~~~------g~~~~v~-g~d~~~~~~~~a~~~g~~~--~~-~~~~~~~~~~DlvvlavP~~~~~~~l~~~~~~~~ 70 (258)
T PF02153_consen 1 IALALRKA------GPDVEVY-GYDRDPETLEAALELGIID--EA-STDIEAVEDADLVVLAVPVSAIEDVLEEIAPYLK 70 (258)
T ss_dssp HHHHHHHT------TTTSEEE-EE-SSHHHHHHHHHTTSSS--EE-ESHHHHGGCCSEEEE-S-HHHHHHHHHHHHCGS-
T ss_pred ChHHHHhC------CCCeEEE-EEeCCHHHHHHHHHCCCee--ec-cCCHhHhcCCCEEEEcCCHHHHHHHHHHhhhhcC
Confidence 57888888 7 5654 5555567788998999874 22 2336789999999999999999999999999999
Q ss_pred CCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHH
Q 014834 204 PNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA 283 (417)
Q Consensus 204 ~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~a 283 (417)
+|++|++.++++....+.-.-.+|.++++|.+|| +.|+. ++.|+..+.....|.++++++..+.+.++.+.+++++..
T Consensus 71 ~~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HP-M~G~e-~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~ 148 (258)
T PF02153_consen 71 PGAIVTDVGSVKAPIVEAMERLLPEGVRFVGGHP-MAGPE-KSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEA 148 (258)
T ss_dssp TTSEEEE--S-CHHHHHHHHHHHTSSGEEEEEEE-SCSTS-SSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHH
T ss_pred CCcEEEEeCCCCHHHHHHHHHhcCcccceeecCC-CCCCc-cccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHH
Confidence 9999999999864322211124557899999999 44553 234444445556789999999988778999999999999
Q ss_pred hCCCceeccchhhhhhhhccccchhhhchHHHHHHHHHHHHHHcCCCHHHHHH
Q 014834 284 LGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYK 336 (417)
Q Consensus 284 lG~~~~iettf~~e~~~dl~ge~t~L~G~~pA~iea~~d~~v~~Gl~~e~A~~ 336 (417)
+|+ +++..+.++|++. | +.+++.-+.+.-++...+.+.+.+......
T Consensus 149 ~Ga-~~~~~~~eeHD~~--~---A~vshlpH~~a~al~~~~~~~~~~~~~~~~ 195 (258)
T PF02153_consen 149 LGA-RVVEMDAEEHDRI--M---AYVSHLPHLLASALANTLAELSSDDPDILR 195 (258)
T ss_dssp CT--EEEE--HHHHHHH--H---HHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC-EEEEcCHHHHHHH--H---HHHHHHHHHHHHHHHHHHHhcCCChHHHHh
Confidence 996 6777787788774 2 334445555555566655544444443333
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.4e-13 Score=134.16 Aligned_cols=226 Identities=14% Similarity=0.148 Sum_probs=165.4
Q ss_pred CEEEEEcccch--------------------HHHHHHHHHhhhhhhcCCcEEEEEecCCh----hhHHHHHHcCceecCC
Q 014834 112 NQIGVIGWGSQ--------------------GPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAEARAAGFTEENG 167 (417)
Q Consensus 112 kkIgIIG~G~m--------------------G~AiA~~Lr~s~~~~~~G~~ViVg~r~~s----~s~~~A~~~G~~~~~~ 167 (417)
+||.|-|.||| |.+||++|.++ |++|++++++.+ ..++...+.|+..
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkA------GheV~V~Drnrsa~e~e~~e~LaeaGA~~--- 71 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMA------GHDVVLAEPNREFMSDDLWKKVEDAGVKV--- 71 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHC------CCEEEEEeCChhhhhhhhhHHHHHCCCee---
Confidence 47778888876 88999999999 999999987543 2235567788876
Q ss_pred CcCCHHhhcCcCCEEEEccCCchHH-HHHHHHHhcCCCCcEEEEecCchh---hhhhhcccC-CCCCccEEEeccCC-Cc
Q 014834 168 TLGDIYETISGSDLVLLLISDAAQA-DNYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLD-FPKNIGVIAVCPKG-MG 241 (417)
Q Consensus 168 ~~~s~~Ea~~~ADIViLavpd~~~~-~Vl~eI~~~lk~gaiLi~a~G~~i---~~~~~~~i~-~~~dv~VI~v~Pnt-pg 241 (417)
+.+..|+++++|+||+++|+..+. +|+..+.+++++|++|++++-++. .++-+..+. -|+|+.|...||-+ |+
T Consensus 72 -AaS~aEAAa~ADVVIL~LPd~aaV~eVl~GLaa~L~~GaIVID~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~ 150 (341)
T TIGR01724 72 -VSDDKEAAKHGEIHVLFTPFGKGTFSIARTIIEHVPENAVICNTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPG 150 (341)
T ss_pred -cCCHHHHHhCCCEEEEecCCHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCC
Confidence 678999999999999999998864 788889999999999998876643 222221222 25799999999943 44
Q ss_pred hhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHHH----H
Q 014834 242 PSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGI----V 317 (417)
Q Consensus 242 ~~vr~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA~----i 317 (417)
+.-.+.|..+ |-. +.-..-+++++.+...+|.+..|+. ++ ..+-++.+.++-.|-.+.+. +
T Consensus 151 ~~~~~~~~~~------~~~--~~~~~~A~ee~i~~~~el~~~~~~~-~~------~~pa~l~~~v~Dm~s~vta~~~~gi 215 (341)
T TIGR01724 151 TPQHGHYVIG------GKP--TAGKEMATEEQISKCVELAKSTGKK-AY------VVPADVTSAVADMGSLVTAVALAGV 215 (341)
T ss_pred CCCCceeeec------ccc--ccccccCCHHHHHHHHHHHHHhCCC-ee------ecchhhcchhhhHHHHHHHHHHHHH
Confidence 4433334443 111 1124567899999999999999985 11 23445666665555555553 3
Q ss_pred HHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhccc
Q 014834 318 ESLFRRFT-ENGMSEDLAYKNTVECITGIISKIISTQGMLAVYNSFS 363 (417)
Q Consensus 318 ea~~d~~v-~~Gl~~e~A~~~~~q~~~~g~~~li~e~G~~~l~~~vs 363 (417)
-.-++..+ -.|-|.+.+-+.+.+++. .++.|+.++|+..|-+.+.
T Consensus 216 l~y~~~~t~i~~ap~~~~~~~~~~~l~-~~a~l~~~~Gi~~~~~~l~ 261 (341)
T TIGR01724 216 LDYYYVGTQIINAPKEMIEKQILMTLQ-TMASLVETSGVEGMAKAIN 261 (341)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHhcC
Confidence 34556664 469999999999999999 9999999999999988765
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.7e-13 Score=140.21 Aligned_cols=153 Identities=14% Similarity=0.061 Sum_probs=114.2
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~ 190 (417)
+||+|||+ |.||+++|+.|++. .+++|+..++. +.+ ..+.++++++||+||||+|...
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~-----~~~~V~g~D~~---------d~~-------~~~~~~~v~~aDlVilavPv~~ 63 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTR-----MQLEVIGHDPA---------DPG-------SLDPATLLQRADVLIFSAPIRH 63 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-----CCCEEEEEcCC---------ccc-------cCCHHHHhcCCCEEEEeCCHHH
Confidence 79999999 99999999999974 16777644432 111 3467888999999999999999
Q ss_pred HHHHHHHHHhc---CCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeecC
Q 014834 191 QADNYEKIFSC---MKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (417)
Q Consensus 191 ~~~Vl~eI~~~---lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~ 267 (417)
..++++++.++ +++|++|++.++++-.-.+. ..+.+.+||..||. .|+....+ .+|.++++|+..
T Consensus 64 ~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~---~~~~~~~fVG~HPM-aG~E~s~l--------f~g~~~iltp~~ 131 (370)
T PRK08818 64 TAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAA---MLASQAEVVGLHPM-TAPPKSPT--------LKGRVMVVCEAR 131 (370)
T ss_pred HHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHH---HHhcCCCEEeeCCC-CCCCCCcc--------cCCCeEEEeCCC
Confidence 99999998875 89999999999997432222 12334679999994 34431111 357888888664
Q ss_pred CCCHHHHHHHHHHHHHhCCCceeccchhhhhhh
Q 014834 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYKS 300 (417)
Q Consensus 268 dvsgea~e~a~~L~~alG~~~~iettf~~e~~~ 300 (417)
..+..+.+++|+..+|+ +++.++.++|+..
T Consensus 132 --~~~~~~~v~~l~~~~Ga-~v~~~~aeeHD~~ 161 (370)
T PRK08818 132 --LQHWSPWVQSLCSALQA-ECVYATPEHHDRV 161 (370)
T ss_pred --chhHHHHHHHHHHHcCC-EEEEcCHHHHHHH
Confidence 33557889999999995 5777787888764
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.6e-13 Score=149.89 Aligned_cols=195 Identities=12% Similarity=0.075 Sum_probs=131.2
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcC-cCCEEEE
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~-~ADIViL 184 (417)
..+++ +||||||+|+||.++|++|++. |++|+++++.. .. +.+.+.|+.. ..+.++++. ++|+||+
T Consensus 365 ~~~~~-~kIgIIGlG~mG~slA~~L~~~------G~~V~~~dr~~-~~-~~a~~~Gv~~----~~~~~el~~~~aDvVIL 431 (667)
T PLN02712 365 NDGSK-LKIAIVGFGNFGQFLAKTMVKQ------GHTVLAYSRSD-YS-DEAQKLGVSY----FSDADDLCEEHPEVILL 431 (667)
T ss_pred CCCCC-CEEEEEecCHHHHHHHHHHHHC------cCEEEEEECCh-HH-HHHHHcCCeE----eCCHHHHHhcCCCEEEE
Confidence 34566 8999999999999999999998 99988777763 22 5566788764 567888775 5999999
Q ss_pred ccCCchHHHHHHHHHh-cCCCCcEEEEecCch---hhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCce
Q 014834 185 LISDAAQADNYEKIFS-CMKPNSILGLSHGFL---LGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~-~lk~gaiLi~a~G~~---i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~ 260 (417)
|+|+....++++++.+ .+++|++|+++++.+ +..+.. .+|.++++|+.||+.....-+..|.. .....+|..
T Consensus 432 avP~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~---~l~~~~~~v~~HPm~G~e~~~~G~~~-~~~lf~~~~ 507 (667)
T PLN02712 432 CTSILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQ---HLPQDFDILCTHPMFGPESGKNGWNN-LAFVFDKVR 507 (667)
T ss_pred CCChHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHH---hccCCCceEeeCCCCCccccccchhh-hhhhccCcE
Confidence 9999999999998875 689999999887663 334433 55678899999998765541111111 000011111
Q ss_pred EEEeecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHHHHHHHHHHHHHcCCC
Q 014834 261 SSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMS 330 (417)
Q Consensus 261 ~liav~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA~iea~~d~~v~~Gl~ 330 (417)
+ .......+..+..+.++..+|+ ++++++.++|+.. + +.+..+|- .+...+++.|++
T Consensus 508 --v-~~~~~~~~~~~~l~~l~~~lGa-~vv~ms~eeHD~~--~----A~vShLpH---lla~~L~~~~~~ 564 (667)
T PLN02712 508 --I-GSDDRRVSRCDSFLDIFAREGC-RMVEMSCAEHDWH--A----AGSQFITH---TMGRLLEKLGLE 564 (667)
T ss_pred --e-CCCcchHHHHHHHHHHHHHcCC-EEEEeCHHHHHHH--H----HHHHHHHH---HHHHHHHHCCCc
Confidence 1 1112223455666799999995 6777787777642 2 22223333 345777778875
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-14 Score=143.89 Aligned_cols=196 Identities=20% Similarity=0.178 Sum_probs=127.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~~ 191 (417)
+||||||+|+||.+||+||.+. |++|.+++|..++..+.+.+.|... ..++.|+++++|+||+++|+..+
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~a------G~~v~v~~r~~~ka~~~~~~~Ga~~----a~s~~eaa~~aDvVitmv~~~~~ 70 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKA------GHEVTVYNRTPEKAAELLAAAGATV----AASPAEAAAEADVVITMLPDDAA 70 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHC------CCEEEEEeCChhhhhHHHHHcCCcc----cCCHHHHHHhCCEEEEecCCHHH
Confidence 5899999999999999999999 9999999998777788888889886 67889999999999999999887
Q ss_pred H-HHHH---HHHhcCCCCcEEEEecCchhhhhhhcccCC-CCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeec
Q 014834 192 A-DNYE---KIFSCMKPNSILGLSHGFLLGHLQSIGLDF-PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (417)
Q Consensus 192 ~-~Vl~---eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~-~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~ 266 (417)
. +|+. .+.+.++||+++++++-++...-.+--..+ ..++.++ =+|-.=+.. ..+ .|.-. |-+.
T Consensus 71 V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~l-DAPVsGg~~---~A~-------~GtLt-imvG 138 (286)
T COG2084 71 VRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFL-DAPVSGGVP---GAA-------AGTLT-IMVG 138 (286)
T ss_pred HHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEE-ecCccCCch---hhh-------hCceE-EEeC
Confidence 5 6774 599999999999999877532111000011 1223333 122111111 111 23333 2334
Q ss_pred CCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhc-hHHH-HHHHHHH---HHHHcCCCHHHHHHHH
Q 014834 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLG-AVHG-IVESLFR---RFTENGMSEDLAYKNT 338 (417)
Q Consensus 267 ~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G-~~pA-~iea~~d---~~v~~Gl~~e~A~~~~ 338 (417)
. +.++.+.++-++..+|.. ++ +.-..=.+..+=+|+ .+-+ .+.++.| .+.++|++++..+...
T Consensus 139 G--~~~~f~r~~pvl~~~g~~-i~------~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi 206 (286)
T COG2084 139 G--DAEAFERAKPVLEAMGKN-IV------HVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVI 206 (286)
T ss_pred C--CHHHHHHHHHHHHHhcCc-eE------EECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 4 568999999999999974 11 111111111111222 1111 2444444 4478999999887743
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.8e-13 Score=138.73 Aligned_cols=179 Identities=9% Similarity=0.026 Sum_probs=125.3
Q ss_pred CCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCC
Q 014834 110 GINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (417)
Q Consensus 110 gmkkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd 188 (417)
.+++|+||| +|.||.++|+.|++. |++|.++++.. ..+.++++++||+||+|+|+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~------G~~V~~~d~~~------------------~~~~~~~~~~aDlVilavP~ 152 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLS------GYQVRILEQDD------------------WDRAEDILADAGMVIVSVPI 152 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHC------CCeEEEeCCCc------------------chhHHHHHhcCCEEEEeCcH
Confidence 448999999 999999999999999 99988877631 12456788899999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEEEecCchh---hhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEee
Q 014834 189 AAQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (417)
Q Consensus 189 ~~~~~Vl~eI~~~lk~gaiLi~a~G~~i---~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav 265 (417)
....++++++.+ +++|++|++.++++. ..+.. ..+. +||..||...... .+ ..|-..++
T Consensus 153 ~~~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~---~~~~--~fvg~HPm~G~~~------~~----~~~~~vv~-- 214 (374)
T PRK11199 153 HLTEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLA---AHSG--PVLGLHPMFGPDV------GS----LAKQVVVV-- 214 (374)
T ss_pred HHHHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHH---hCCC--CEEeeCCCCCCCC------cc----cCCCEEEE--
Confidence 999999999988 999999999988743 23322 2222 6999999554322 11 12333433
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHHHHHHHHHHHHHcCCCHHHHHH
Q 014834 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYK 336 (417)
Q Consensus 266 ~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA~iea~~d~~v~~Gl~~e~A~~ 336 (417)
....+.++.+.+..++..+|. .++..+.++|+.. + +.+++..+.+.-++...+.+.|.+.+....
T Consensus 215 ~~~~~~~~~~~~~~l~~~lG~-~v~~~~~~~HD~~--~---a~vshLpH~~a~al~~~l~~~~~~~~~~~~ 279 (374)
T PRK11199 215 CDGRQPEAYQWLLEQIQVWGA-RLHRISAVEHDQN--M---AFIQALRHFATFAYGLHLAKENVDLEQLLA 279 (374)
T ss_pred cCCCCchHHHHHHHHHHHCCC-EEEECCHHHHHHH--H---HHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 333355788899999999996 5666676666653 2 233433333344555666667888776544
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-13 Score=134.66 Aligned_cols=153 Identities=17% Similarity=0.140 Sum_probs=116.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhH----------HHHHHcCceec-------CC--CcCC
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF----------AEARAAGFTEE-------NG--TLGD 171 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~----------~~A~~~G~~~~-------~~--~~~s 171 (417)
|+||+|||+|.||.++|..|... |++|++.+++.+... +...+.|.... .+ ...+
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~------g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~ 76 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVA------GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTD 76 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHC------CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCC
Confidence 57999999999999999999999 999888776543321 12333442100 00 0234
Q ss_pred HHhhcCcCCEEEEccCCchH--HHHHHHHHhcCCCCcEE-EEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHH
Q 014834 172 IYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (417)
Q Consensus 172 ~~Ea~~~ADIViLavpd~~~--~~Vl~eI~~~lk~gaiL-i~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly 248 (417)
.+ .+++||+||+++|++.. .+++++|.++++++++| +.++|+.+..+.+ .++..-+++++||+.|.+.
T Consensus 77 ~~-~~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~---~~~~~~r~ig~h~~~P~~~----- 147 (282)
T PRK05808 77 LD-DLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAA---ATKRPDKVIGMHFFNPVPV----- 147 (282)
T ss_pred HH-HhccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHH---hhCCCcceEEeeccCCccc-----
Confidence 54 47899999999998776 57999999999999987 6889998877765 3333457999999999988
Q ss_pred hhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 249 ~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~ 287 (417)
..++. ++++...+.+..+.+..++..+|..
T Consensus 148 -------~~~ve--v~~g~~t~~e~~~~~~~l~~~lGk~ 177 (282)
T PRK05808 148 -------MKLVE--IIRGLATSDATHEAVEALAKKIGKT 177 (282)
T ss_pred -------CccEE--EeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 34564 5667888899999999999999975
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.2e-13 Score=139.40 Aligned_cols=194 Identities=13% Similarity=0.086 Sum_probs=133.3
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHH------------------HcC-ceecCCCcCC
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR------------------AAG-FTEENGTLGD 171 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~------------------~~G-~~~~~~~~~s 171 (417)
++||||||+|+||.+||.+|..+ |++|+++++..++...... ..| +.. +.+
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~------G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~----~~~ 73 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLA------GIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTF----CAS 73 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEe----eCC
Confidence 47999999999999999999999 9999999886543222110 012 332 467
Q ss_pred HHhhcCcCCEEEEccCCchH--HHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHH
Q 014834 172 IYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (417)
Q Consensus 172 ~~Ea~~~ADIViLavpd~~~--~~Vl~eI~~~lk~gaiLi-~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly 248 (417)
+++++++||+|+.++|+... ..++.++.+.++++.+|. -++|+.+..+.+ .++..-.++..||+.|...
T Consensus 74 ~~ea~~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~---~~~~~~r~~~~hP~nP~~~----- 145 (495)
T PRK07531 74 LAEAVAGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQE---GMTHPERLFVAHPYNPVYL----- 145 (495)
T ss_pred HHHHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCcceEEEEecCCCccc-----
Confidence 88999999999999999874 357788888888887654 667887766654 3333447999999999865
Q ss_pred hhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHH-HHHHHHHHHHHHc
Q 014834 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVH-GIVESLFRRFTEN 327 (417)
Q Consensus 249 ~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~p-A~iea~~d~~v~~ 327 (417)
+. .. .++.....+.+..+.+..++..+|...++- + .... ..+++.+. +++.-++..+.+.
T Consensus 146 -------~~-Lv-evv~g~~t~~e~~~~~~~~~~~lG~~~v~~-----~---k~~~--gfi~nrl~~a~~~EA~~L~~~g 206 (495)
T PRK07531 146 -------LP-LV-ELVGGGKTSPETIRRAKEILREIGMKPVHI-----A---KEID--AFVGDRLLEALWREALWLVKDG 206 (495)
T ss_pred -------Cc-eE-EEcCCCCCCHHHHHHHHHHHHHcCCEEEee-----c---CCCc--chhHHHHHHHHHHHHHHHHHcC
Confidence 22 22 355566677899999999999999752111 1 1111 12333322 2334445555678
Q ss_pred CCCHHHHHHHHHHH
Q 014834 328 GMSEDLAYKNTVEC 341 (417)
Q Consensus 328 Gl~~e~A~~~~~q~ 341 (417)
|+++++.....-+.
T Consensus 207 ~~s~~~id~~~~~g 220 (495)
T PRK07531 207 IATTEEIDDVIRYS 220 (495)
T ss_pred CCCHHHHHHHHhhc
Confidence 89999888765544
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.2e-14 Score=115.30 Aligned_cols=90 Identities=23% Similarity=0.317 Sum_probs=74.4
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCC---cEEEEE-ecCChhhHHHHHHcCceecCCCcC-CHHhhcCcCCEEEEccC
Q 014834 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSD---IVVKVG-LRKGSRSFAEARAAGFTEENGTLG-DIYETISGSDLVLLLIS 187 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G---~~ViVg-~r~~s~s~~~A~~~G~~~~~~~~~-s~~Ea~~~ADIViLavp 187 (417)
||||||+|+||.+++++|.++ | .+|.+. .|+.++..+.+.+.++.. .. +..|+++++|+|||++|
T Consensus 1 kI~iIG~G~mg~al~~~l~~~------g~~~~~v~~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~~advvilav~ 70 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS------GIKPHEVIIVSSRSPEKAAELAKEYGVQA----TADDNEEAAQEADVVILAVK 70 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT------TS-GGEEEEEEESSHHHHHHHHHHCTTEE----ESEEHHHHHHHTSEEEE-S-
T ss_pred CEEEECCCHHHHHHHHHHHHC------CCCceeEEeeccCcHHHHHHHHHhhcccc----ccCChHHhhccCCEEEEEEC
Confidence 799999999999999999999 8 788856 677666677778888664 34 79999999999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEE-EecC
Q 014834 188 DAAQADNYEKIFSCMKPNSILG-LSHG 213 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~gaiLi-~a~G 213 (417)
|+...++++++ +...++++|+ +++|
T Consensus 71 p~~~~~v~~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 71 PQQLPEVLSEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp GGGHHHHHHHH-HHHHTTSEEEEESTT
T ss_pred HHHHHHHHHHH-hhccCCCEEEEeCCC
Confidence 99999999999 7777888765 5554
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-13 Score=124.84 Aligned_cols=149 Identities=22% Similarity=0.223 Sum_probs=100.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~ 190 (417)
|+||||||+|+||.+||++|.++ |++|.+++|+.+ ..+...+.|... +.++.|+++++|+|++++|+..
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~------g~~v~~~d~~~~-~~~~~~~~g~~~----~~s~~e~~~~~dvvi~~v~~~~ 69 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKA------GYEVTVYDRSPE-KAEALAEAGAEV----ADSPAEAAEQADVVILCVPDDD 69 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHT------TTEEEEEESSHH-HHHHHHHTTEEE----ESSHHHHHHHBSEEEE-SSSHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhc------CCeEEeeccchh-hhhhhHHhhhhh----hhhhhhHhhcccceEeecccch
Confidence 68999999999999999999999 999998887754 455666678876 7899999999999999999866
Q ss_pred H-HHHHHH--HHhcCCCCcEEEEecCchhh---hhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEe
Q 014834 191 Q-ADNYEK--IFSCMKPNSILGLSHGFLLG---HLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (417)
Q Consensus 191 ~-~~Vl~e--I~~~lk~gaiLi~a~G~~i~---~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~lia 264 (417)
+ .+++.+ +.+.+++|+++++++-.+.. .+.+ ..-++++.++- +|-.-++. .-+.| -++.++
T Consensus 70 ~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~--~~~~~g~~~vd-apV~Gg~~---~a~~g------~l~~~~- 136 (163)
T PF03446_consen 70 AVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAE--RLAAKGVRYVD-APVSGGPP---GAEEG------TLTIMV- 136 (163)
T ss_dssp HHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHH--HHHHTTEEEEE-EEEESHHH---HHHHT------TEEEEE-
T ss_pred hhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhh--hhhhccceeee-eeeecccc---ccccc------ceEEEc-
Confidence 5 579887 99999999999988876542 2222 11124555553 22111111 11222 134433
Q ss_pred ecCCCCHHHHHHHHHHHHHhCC
Q 014834 265 VHQDVDGRATNVALGWSVALGS 286 (417)
Q Consensus 265 v~~dvsgea~e~a~~L~~alG~ 286 (417)
.. +.++.+.++.++..+|.
T Consensus 137 -gG--~~~~~~~~~~~l~~~~~ 155 (163)
T PF03446_consen 137 -GG--DEEAFERVRPLLEAMGK 155 (163)
T ss_dssp -ES---HHHHHHHHHHHHHHEE
T ss_pred -cC--CHHHHHHHHHHHHHHhC
Confidence 33 45788999999999986
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.48 E-value=2e-12 Score=141.42 Aligned_cols=164 Identities=18% Similarity=0.176 Sum_probs=118.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhc-CcCCEEEEccCCch
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~-~~ADIViLavpd~~ 190 (417)
++|||||+|+||.++|++|++. |++|++++++.. .+.+.+.|+.. ..+.++++ +++|+|++|||+..
T Consensus 53 ~kIgIIG~G~mG~slA~~L~~~------G~~V~~~dr~~~--~~~A~~~Gv~~----~~d~~e~~~~~aDvViLavP~~~ 120 (667)
T PLN02712 53 LKIAIIGFGNYGQFLAKTLISQ------GHTVLAHSRSDH--SLAARSLGVSF----FLDPHDLCERHPDVILLCTSIIS 120 (667)
T ss_pred CEEEEEccCHHHHHHHHHHHHC------CCEEEEEeCCHH--HHHHHHcCCEE----eCCHHHHhhcCCCEEEEcCCHHH
Confidence 7899999999999999999998 998877776532 35677788764 56777755 57999999999999
Q ss_pred HHHHHHHHH-hcCCCCcEEEEecCchhh---hhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEee-
Q 014834 191 QADNYEKIF-SCMKPNSILGLSHGFLLG---HLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV- 265 (417)
Q Consensus 191 ~~~Vl~eI~-~~lk~gaiLi~a~G~~i~---~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav- 265 (417)
..++++++. +++++|++|+++.+++.. .+.. .+|++.++|..||.. |+.. ...| -.|...+++.
T Consensus 121 ~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~---~l~~~~~~v~~HPMa-G~e~---~~~g----~~~~~~~~~~~ 189 (667)
T PLN02712 121 TENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLD---YLPEDFDIICSHPMF-GPQS---AKHG----WDGLRFVYEKV 189 (667)
T ss_pred HHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHH---hcCCCCeEEeeCCcC-CCcc---ccch----hccCcEEEeec
Confidence 999999886 789999999999887632 2222 456778899999965 4431 1111 1334444442
Q ss_pred ---cCCCCHHHHHHHHHHHHHhCCCceeccchhhhhh
Q 014834 266 ---HQDVDGRATNVALGWSVALGSPFTFATTLEQEYK 299 (417)
Q Consensus 266 ---~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~ 299 (417)
+.....+..+..++++..+|+ ++++++.++++.
T Consensus 190 ~~~~~~~~~~~~~~l~~l~~~lGa-~v~~ms~eeHD~ 225 (667)
T PLN02712 190 RIGNEELRVSRCKSFLEVFEREGC-KMVEMSCTEHDK 225 (667)
T ss_pred cCCCccccHHHHHHHHHHHHHcCC-EEEEeCHHHHHH
Confidence 112222456677899999996 677777667655
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.4e-12 Score=128.47 Aligned_cols=154 Identities=16% Similarity=0.161 Sum_probs=112.0
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHH----------HHHHcCceec-------C-CCcCCH
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA----------EARAAGFTEE-------N-GTLGDI 172 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~----------~A~~~G~~~~-------~-~~~~s~ 172 (417)
++||+|||+|.||.+||.+|..+ |++|++++++.++..+ ...+.|.... + -...+.
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~------G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 77 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAA------GMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTN 77 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhc------CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCC
Confidence 48999999999999999999999 9999888776433211 1222221000 0 002334
Q ss_pred HhhcCcCCEEEEccCCch--HHHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHh
Q 014834 173 YETISGSDLVLLLISDAA--QADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYV 249 (417)
Q Consensus 173 ~Ea~~~ADIViLavpd~~--~~~Vl~eI~~~lk~gaiLi-~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~ 249 (417)
.+++++||+||+++|... ...++.++.+.++++++|+ .++|+++..+.+ ......+++++||..|...
T Consensus 78 ~~~~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~---~~~~~~r~~g~h~~~pp~~------ 148 (295)
T PLN02545 78 LEELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLAS---ATQRPQQVIGMHFMNPPPI------ 148 (295)
T ss_pred HHHhCCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCCcceEEEeccCCccc------
Confidence 467899999999999444 4568888999999999875 889998877665 3334468999999888776
Q ss_pred hcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 250 QGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 250 ~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~ 287 (417)
+. .. .++.+...+.+..+.+..++..+|..
T Consensus 149 ------~~-lv-eiv~g~~t~~e~~~~~~~ll~~lG~~ 178 (295)
T PLN02545 149 ------MK-LV-EIIRGADTSDEVFDATKALAERFGKT 178 (295)
T ss_pred ------Cc-eE-EEeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 12 22 35667778889999999999999975
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.9e-12 Score=126.59 Aligned_cols=149 Identities=19% Similarity=0.226 Sum_probs=102.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcC--------------ceecCCCcCCHHhhc
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG--------------FTEENGTLGDIYETI 176 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G--------------~~~~~~~~~s~~Ea~ 176 (417)
|+||+|||+|+||.++|.+|.+. |++|.+++|.... .+...+.| +.. ..+.++++
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~------g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 69 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARN------GHDVTLWARDPEQ-AAEINADRENPRYLPGIKLPDNLRA----TTDLAEAL 69 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCEEEEEECCHHH-HHHHHHcCcccccCCCCcCCCCeEE----eCCHHHHH
Confidence 68999999999999999999999 9999888775433 33333332 222 45777889
Q ss_pred CcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEe-cCchhh-------hhhhcccCCCC-CccEEEeccCCCchhHHHH
Q 014834 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS-HGFLLG-------HLQSIGLDFPK-NIGVIAVCPKGMGPSVRRL 247 (417)
Q Consensus 177 ~~ADIViLavpd~~~~~Vl~eI~~~lk~gaiLi~a-~G~~i~-------~~~~~~i~~~~-dv~VI~v~Pntpg~~vr~l 247 (417)
+++|+||+++|+....++++++.++++++++|+.. .|+... .+.+ ..+. ....++..|+.+...
T Consensus 70 ~~~D~vi~~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~---~~~~~~~~~~~~~P~~~~~~---- 142 (325)
T PRK00094 70 ADADLILVAVPSQALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEE---ELPDLAPIAVLSGPSFAKEV---- 142 (325)
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHH---HcCCCCceEEEECccHHHHH----
Confidence 99999999999988889999999999999977644 487542 2222 2222 123556678664443
Q ss_pred HhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCC
Q 014834 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS 286 (417)
Q Consensus 248 y~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~ 286 (417)
+.|.+.++.... .+.+..+.+..++...|.
T Consensus 143 --------~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 172 (325)
T PRK00094 143 --------ARGLPTAVVIAS-TDEELAERVQELFHSPYF 172 (325)
T ss_pred --------HcCCCcEEEEEe-CCHHHHHHHHHHhCCCCE
Confidence 123322222222 245778888888888875
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.5e-12 Score=120.24 Aligned_cols=156 Identities=17% Similarity=0.146 Sum_probs=109.8
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH-------cCceecCCCcCCHHhhcCcCCEEE
Q 014834 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~-------~G~~~~~~~~~s~~Ea~~~ADIVi 183 (417)
+||+||| .|+||.+++..|.+. |++|+++.|..++..+.+.. .|+.. .-...+..++++++|+||
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~------G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~-~~~~~~~~ea~~~aDvVi 73 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKA------GNKIIIGSRDLEKAEEAAAKALEELGHGGSDI-KVTGADNAEAAKRADVVI 73 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhC------CCEEEEEEcCHHHHHHHHHHHHhhccccCCCc-eEEEeChHHHHhcCCEEE
Confidence 5899997 999999999999999 99998888765543333322 13210 001236678899999999
Q ss_pred EccCCchHHHHHHHHHhcCCCCcEEE-EecCchh-----------------hhhhhcccCCCCCccEEEeccCCCchhHH
Q 014834 184 LLISDAAQADNYEKIFSCMKPNSILG-LSHGFLL-----------------GHLQSIGLDFPKNIGVIAVCPKGMGPSVR 245 (417)
Q Consensus 184 Lavpd~~~~~Vl~eI~~~lk~gaiLi-~a~G~~i-----------------~~~~~~~i~~~~dv~VI~v~Pntpg~~vr 245 (417)
+++|++.+.++++++.+.++. ++|+ .+.|+.+ ..+++ .+|.+.+||+.+||.+.....
T Consensus 74 lavp~~~~~~~l~~l~~~l~~-~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~---~~p~~~~VVka~~~~~a~~~~ 149 (219)
T TIGR01915 74 LAVPWDHVLKTLESLRDELSG-KLVISPVVPLASDGGKGARYLPPEEGSAAEQAAA---LLPETSRVVAAFHNLSAVLLQ 149 (219)
T ss_pred EECCHHHHHHHHHHHHHhccC-CEEEEeccCceecCCCCceecCCCCCcHHHHHHH---hCCCCCeEeeccccCCHHHhc
Confidence 999999999999988877754 6655 6678765 22332 355546899999999988754
Q ss_pred HHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHh-CCC
Q 014834 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVAL-GSP 287 (417)
Q Consensus 246 ~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~al-G~~ 287 (417)
.. . .+.+...++| . | ++++.+.+.+|...+ |..
T Consensus 150 ~~-~-----~~~~~~~~v~-G-d-d~~ak~~v~~L~~~~~G~~ 183 (219)
T TIGR01915 150 DV-D-----DEVDCDVLVC-G-D-DEEAKEVVAELAGRIDGLR 183 (219)
T ss_pred CC-C-----CCCCCCEEEE-C-C-CHHHHHHHHHHHHhcCCCC
Confidence 31 1 1234555444 2 2 346999999999999 853
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-11 Score=122.90 Aligned_cols=196 Identities=13% Similarity=0.064 Sum_probs=124.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~~ 191 (417)
+||||||+|+||.+|+++|.+. |++|.++++.. + .+...+.|... +.+..|++++||+||+++|+..+
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~------G~~v~v~~~~~-~-~~~~~~~g~~~----~~s~~~~~~~advVi~~v~~~~~ 68 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARA------GHQLHVTTIGP-V-ADELLSLGAVS----VETARQVTEASDIIFIMVPDTPQ 68 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHC------CCeEEEEeCCH-h-HHHHHHcCCee----cCCHHHHHhcCCEEEEeCCChHH
Confidence 3799999999999999999999 99998887763 2 34455677764 57888999999999999998855
Q ss_pred -HHHHH---HHHhcCCCCcEEEEecCchhhh---hhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEe
Q 014834 192 -ADNYE---KIFSCMKPNSILGLSHGFLLGH---LQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (417)
Q Consensus 192 -~~Vl~---eI~~~lk~gaiLi~a~G~~i~~---~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~lia 264 (417)
.+++. .+.+.+++|++|++++...... +.+ ..-..++.++- +|-.-+.. ..+. |-..+++
T Consensus 69 v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~--~~~~~G~~~vd-aPVsGg~~---~a~~-------g~l~~~~ 135 (292)
T PRK15059 69 VEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFAR--QVNELGGDYLD-APVSGGEI---GARE-------GTLSIMV 135 (292)
T ss_pred HHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCCEEE-ecCCCCHH---HHhc-------CcEEEEE
Confidence 56763 3677789999999998876431 211 11134666766 57444333 2233 3323232
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHHHHHHHHHHHHHcCCCHHHHHHH
Q 014834 265 VHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKN 337 (417)
Q Consensus 265 v~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA~iea~~d~~v~~Gl~~e~A~~~ 337 (417)
.. +.+..+.++.++..+|.....--..-.-...++.. ...+.....++.|+ +..+.+.|++++..+..
T Consensus 136 -gG--~~~~~~~~~p~l~~~g~~~~~~G~~G~g~~~Kl~~-N~l~~~~~~a~~Ea-~~la~~~Gld~~~~~~~ 203 (292)
T PRK15059 136 -GG--DEAVFERVKPLFELLGKNITLVGGNGDGQTCKVAN-QIIVALNIEAVSEA-LLFASKAGADPVRVRQA 203 (292)
T ss_pred -cC--CHHHHHHHHHHHHHHcCCcEEeCCccHHHHHHHHH-HHHHHHHHHHHHHH-HHHHHHcCCCHHHHHHH
Confidence 33 46789999999999997421100000000111111 11111123334443 23457899999988853
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.9e-12 Score=123.13 Aligned_cols=201 Identities=13% Similarity=0.102 Sum_probs=124.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~ 190 (417)
|+||+|||+|+||.+||.+|.+. |++|.+++++.++ .+...+.|... +.+..++++++|+||+++|+..
T Consensus 1 m~~Ig~IGlG~mG~~mA~~l~~~------G~~V~v~d~~~~~-~~~~~~~g~~~----~~s~~~~~~~aDvVi~~vp~~~ 69 (296)
T PRK15461 1 MAAIAFIGLGQMGSPMASNLLKQ------GHQLQVFDVNPQA-VDALVDKGATP----AASPAQAAAGAEFVITMLPNGD 69 (296)
T ss_pred CCeEEEEeeCHHHHHHHHHHHHC------CCeEEEEcCCHHH-HHHHHHcCCcc----cCCHHHHHhcCCEEEEecCCHH
Confidence 57999999999999999999999 9999888876544 45555567654 5688899999999999999986
Q ss_pred H-HHHHH---HHHhcCCCCcEEEEecCchhh---hhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEE
Q 014834 191 Q-ADNYE---KIFSCMKPNSILGLSHGFLLG---HLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (417)
Q Consensus 191 ~-~~Vl~---eI~~~lk~gaiLi~a~G~~i~---~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~li 263 (417)
+ .+++. .+.+.+++|+++++.+-+... .+.+ .....++.++ =+|-.-+.. .-+ .|...++
T Consensus 70 ~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~--~l~~~g~~~l-dapV~g~~~---~a~-------~g~l~~~ 136 (296)
T PRK15461 70 LVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIA--DMQAKGFSMM-DVPVGRTSD---NAI-------TGTLLLL 136 (296)
T ss_pred HHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCcEE-EccCCCCHH---HHH-------hCcEEEE
Confidence 4 56764 477889999998877765432 2211 1112345554 344322221 112 2344323
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCceeccc-hhhhhhhhccccchhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 014834 264 AVHQDVDGRATNVALGWSVALGSPFTFATT-LEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVEC 341 (417)
Q Consensus 264 av~~dvsgea~e~a~~L~~alG~~~~iett-f~~e~~~dl~ge~t~L~G~~pA~iea~~d~~v~~Gl~~e~A~~~~~q~ 341 (417)
+.. +.+..+.+..++..+|.. ++... .-.-...++.. -.+++...+.+--++..+.+.|++++..+......
T Consensus 137 -~gg--~~~~~~~~~p~l~~~g~~-~~~~g~~G~g~~~Kl~~--N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~~~ 209 (296)
T PRK15461 137 -AGG--TAEQVERATPILMAMGNE-LINAGGPGMGIRVKLIN--NYMSIALNALSAEAAVLCEALGLSFDVALKVMSGT 209 (296)
T ss_pred -ECC--CHHHHHHHHHHHHHHcCC-eEeeCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 233 557899999999999974 21110 00000111100 01222222333334456689999999887654443
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.2e-11 Score=117.90 Aligned_cols=195 Identities=13% Similarity=0.109 Sum_probs=125.1
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHH-----------HHHcCceecC---------CCcC
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTLG 170 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~-----------A~~~G~~~~~---------~~~~ 170 (417)
|++|+|||.|.||.++|.+|.++ |++|+++++..+. .+. ..+.|..... ..+.
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~------G~~V~v~d~~~~~-~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~ 74 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARA------GHEVRLWDADPAA-AAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTD 74 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHC------CCeeEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEEC
Confidence 47899999999999999999999 9999988876432 222 2234531000 1146
Q ss_pred CHHhhcCcCCEEEEccCCch--HHHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHH
Q 014834 171 DIYETISGSDLVLLLISDAA--QADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRL 247 (417)
Q Consensus 171 s~~Ea~~~ADIViLavpd~~--~~~Vl~eI~~~lk~gaiLi-~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~l 247 (417)
++.+++++||+|+.++|+.. ...++.++.+..+++.+|. -+++..+..+.+ .++..-.++..||-.|....
T Consensus 75 ~~~~a~~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~---~~~~~~~~~~~hp~~p~~~~--- 148 (308)
T PRK06129 75 SLADAVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTE---HLAGRERCLVAHPINPPYLI--- 148 (308)
T ss_pred cHHHhhCCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHH---hcCCcccEEEEecCCCcccC---
Confidence 78889999999999999874 3467777777666555443 233444444544 33444579999997775441
Q ss_pred HhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhch-HHHHHHHHHHHHHH
Q 014834 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGA-VHGIVESLFRRFTE 326 (417)
Q Consensus 248 y~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~-~pA~iea~~d~~v~ 326 (417)
.. ..++++...+.+..+.+..++..+|... +... .+ .. +.+++- ..+++.-++..+.+
T Consensus 149 ----------~l-veiv~~~~t~~~~~~~~~~~~~~lG~~~-v~v~--~~-~~------G~i~nrl~~a~~~EA~~l~~~ 207 (308)
T PRK06129 149 ----------PV-VEVVPAPWTAPATLARAEALYRAAGQSP-VRLR--RE-ID------GFVLNRLQGALLREAFRLVAD 207 (308)
T ss_pred ----------ce-EEEeCCCCCCHHHHHHHHHHHHHcCCEE-EEec--CC-Cc------cHHHHHHHHHHHHHHHHHHHc
Confidence 12 2255566677899999999999999742 1110 01 01 113332 22344445555667
Q ss_pred cCCCHHHHHHHHH
Q 014834 327 NGMSEDLAYKNTV 339 (417)
Q Consensus 327 ~Gl~~e~A~~~~~ 339 (417)
.|+++++......
T Consensus 208 g~~~~~~id~~~~ 220 (308)
T PRK06129 208 GVASVDDIDAVIR 220 (308)
T ss_pred CCCCHHHHHHHHH
Confidence 7899998776543
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.5e-11 Score=120.28 Aligned_cols=147 Identities=16% Similarity=0.135 Sum_probs=103.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCc---CCEEEEccCC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG---SDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~---ADIViLavpd 188 (417)
++|||||+|+||.+||++|.+. |++|++++|+.++ .+.+.+.|... ..++++++++ +|+||+++|+
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~------g~~v~v~dr~~~~-~~~~~~~g~~~----~~s~~~~~~~~~~advVi~~vp~ 69 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLRED------GHEVVGYDVNQEA-VDVAGKLGITA----RHSLEELVSKLEAPRTIWVMVPA 69 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhC------CCEEEEEECCHHH-HHHHHHCCCee----cCCHHHHHHhCCCCCEEEEEecC
Confidence 4799999999999999999999 9999888876443 45556678765 5688888876 6999999999
Q ss_pred c-hHHHHHHHHHhcCCCCcEEEEecCchh---hhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEe
Q 014834 189 A-AQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (417)
Q Consensus 189 ~-~~~~Vl~eI~~~lk~gaiLi~a~G~~i---~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~lia 264 (417)
. ...++++++.+.+++|++|++++.... ..+.+ . .-..++.++ =+|-.-+.. .-+ .|. . +-
T Consensus 70 ~~~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~-~-~~~~g~~~v-dapV~G~~~---~a~-------~g~-~-~~ 134 (299)
T PRK12490 70 GEVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAE-E-LAERGIHYV-DCGTSGGVW---GLR-------NGY-C-LM 134 (299)
T ss_pred chHHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHH-H-HHHcCCeEE-eCCCCCCHH---HHh-------cCC-e-EE
Confidence 8 667899999999999999998876543 12221 1 112345554 234221211 111 344 3 23
Q ss_pred ecCCCCHHHHHHHHHHHHHhCC
Q 014834 265 VHQDVDGRATNVALGWSVALGS 286 (417)
Q Consensus 265 v~~dvsgea~e~a~~L~~alG~ 286 (417)
+.. +.++.+.++.++..+|.
T Consensus 135 ~gG--~~~~~~~~~~~l~~~~~ 154 (299)
T PRK12490 135 VGG--DKEIYDRLEPVFKALAP 154 (299)
T ss_pred ecC--CHHHHHHHHHHHHHhcC
Confidence 344 45788999999999996
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.6e-11 Score=119.23 Aligned_cols=147 Identities=16% Similarity=0.118 Sum_probs=102.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhh---cCcCCEEEEccCC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET---ISGSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea---~~~ADIViLavpd 188 (417)
+||||||+|+||.+||++|.+. |++|.+++|+.++ .+...+.|... ..+++++ ++++|+|++++|+
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~------g~~V~~~dr~~~~-~~~l~~~g~~~----~~s~~~~~~~~~~~dvIi~~vp~ 69 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKR------GHDCVGYDHDQDA-VKAMKEDRTTG----VANLRELSQRLSAPRVVWVMVPH 69 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHC------CCEEEEEECCHHH-HHHHHHcCCcc----cCCHHHHHhhcCCCCEEEEEcCc
Confidence 4899999999999999999999 9999888776544 45555667654 3455554 4578999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEEEecCch---hhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEee
Q 014834 189 AAQADNYEKIFSCMKPNSILGLSHGFL---LGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (417)
Q Consensus 189 ~~~~~Vl~eI~~~lk~gaiLi~a~G~~---i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav 265 (417)
....++++++.+++++|++|++++... .....+ ..-+++++++-....+..... -.|. + +.+
T Consensus 70 ~~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~--~~~~~g~~~vda~vsGg~~~a-----------~~G~-~-~~~ 134 (298)
T TIGR00872 70 GIVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYK--LLKEKGIHLLDCGTSGGVWGR-----------ERGY-C-FMI 134 (298)
T ss_pred hHHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHH--HHHhcCCeEEecCCCCCHHHH-----------hcCC-e-eee
Confidence 977899999999999999998876542 111111 112345677764333221111 1354 3 333
Q ss_pred cCCCCHHHHHHHHHHHHHhCC
Q 014834 266 HQDVDGRATNVALGWSVALGS 286 (417)
Q Consensus 266 ~~dvsgea~e~a~~L~~alG~ 286 (417)
.. +.++.+.+..++..+|.
T Consensus 135 gG--~~~~~~~~~~~l~~~~~ 153 (298)
T TIGR00872 135 GG--DGEAFARAEPLFADVAP 153 (298)
T ss_pred CC--CHHHHHHHHHHHHHhcC
Confidence 44 46889999999999986
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.9e-11 Score=119.15 Aligned_cols=152 Identities=17% Similarity=0.234 Sum_probs=111.8
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH--------------cCceecC---------C
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--------------AGFTEEN---------G 167 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~--------------~G~~~~~---------~ 167 (417)
++||+|||+|.||.++|..|.++ |++|++++++.+. .+.+.+ .|..... .
T Consensus 3 i~~I~ViGaG~mG~~iA~~la~~------G~~V~l~d~~~~~-l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~ 75 (291)
T PRK06035 3 IKVIGVVGSGVMGQGIAQVFART------GYDVTIVDVSEEI-LKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIR 75 (291)
T ss_pred CcEEEEECccHHHHHHHHHHHhc------CCeEEEEeCCHHH-HHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcE
Confidence 48999999999999999999999 9999888776432 322211 1211000 0
Q ss_pred CcCCHHhhcCcCCEEEEccCCchH--HHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhH
Q 014834 168 TLGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSV 244 (417)
Q Consensus 168 ~~~s~~Ea~~~ADIViLavpd~~~--~~Vl~eI~~~lk~gaiLi-~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~v 244 (417)
...+. +++++||+||+++|++.. .++++++.+.++++++|+ .++|+.+..+.+ .++..-+++.+||..|.+..
T Consensus 76 ~~~~~-~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~---~~~~~~r~ig~hf~~P~~~~ 151 (291)
T PRK06035 76 TSTSY-ESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIAT---ALERKDRFIGMHWFNPAPVM 151 (291)
T ss_pred eeCCH-HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHh---hcCCcccEEEEecCCCcccC
Confidence 12344 678999999999998863 578888999999998765 677887766654 33344579999999998872
Q ss_pred HHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 245 RRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 245 r~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~ 287 (417)
.++.. ..+...+.+..+.+..++..+|..
T Consensus 152 ------------~~vEv--~~g~~T~~e~~~~~~~~~~~lgk~ 180 (291)
T PRK06035 152 ------------KLIEV--VRAALTSEETFNTTVELSKKIGKI 180 (291)
T ss_pred ------------ccEEE--eCCCCCCHHHHHHHHHHHHHcCCe
Confidence 34432 367778899999999999999975
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.8e-11 Score=117.42 Aligned_cols=149 Identities=15% Similarity=0.093 Sum_probs=109.1
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH-----------cC-------------ceecC
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AG-------------FTEEN 166 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~-----------~G-------------~~~~~ 166 (417)
|+||+|||+|.||.++|..|.++ |++|++++++.+. .+.+.+ .| +..
T Consensus 1 ~~~V~VIG~G~mG~~iA~~la~~------G~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-- 71 (288)
T PRK09260 1 IEKLVVVGAGVMGRGIAYVFAVS------GFQTTLVDIKQEQ-LESAQQEIASIFEQGVARGKLTEAARQAALARLSY-- 71 (288)
T ss_pred CcEEEEECccHHHHHHHHHHHhC------CCcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE--
Confidence 58999999999999999999999 9999888776433 333221 11 221
Q ss_pred CCcCCHHhhcCcCCEEEEccCCchHH--HHHHHHHhcCCCCcEE-EEecCchhhhhhhcccCCCCCccEEEeccCCCchh
Q 014834 167 GTLGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSIL-GLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPS 243 (417)
Q Consensus 167 ~~~~s~~Ea~~~ADIViLavpd~~~~--~Vl~eI~~~lk~gaiL-i~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~ 243 (417)
+.+.++++++||+||.|+|+.... .++.++.++++++++| +.++.+.+..+.+ ......+++.+|+-.|...
T Consensus 72 --~~~~~~~~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~---~~~~~~r~~g~h~~~Pv~~ 146 (288)
T PRK09260 72 --SLDLKAAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIAS---FTKRPERVIAMHFFNPVHK 146 (288)
T ss_pred --eCcHHHhhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCcccEEEEecCCCccc
Confidence 457888999999999999988753 5778898999999977 5677777766554 2222345788888765543
Q ss_pred HHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 244 VRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 244 vr~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~ 287 (417)
+--..++.+...+.+..+.+..++..+|..
T Consensus 147 --------------~~Lve~v~g~~t~~~~~~~~~~~l~~lg~~ 176 (288)
T PRK09260 147 --------------MKLVELIRGLETSDETVQVAKEVAEQMGKE 176 (288)
T ss_pred --------------CceEEEeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 122335556667889999999999999964
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.2e-10 Score=112.77 Aligned_cols=212 Identities=16% Similarity=0.164 Sum_probs=135.3
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH-------------------------cCceec
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------------------------AGFTEE 165 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~-------------------------~G~~~~ 165 (417)
++||+|||.|.||.++|..|..+ |++|++++++.+ ..+.+.+ ..+..
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~------G~~V~l~d~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~- 74 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFH------GFDVTIYDISDE-ALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL- 74 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhc------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-
Confidence 48999999999999999999998 999988877643 2222221 12222
Q ss_pred CCCcCCHHhhcCcCCEEEEccCCch--HHHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCch
Q 014834 166 NGTLGDIYETISGSDLVLLLISDAA--QADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGP 242 (417)
Q Consensus 166 ~~~~~s~~Ea~~~ADIViLavpd~~--~~~Vl~eI~~~lk~gaiLi-~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~ 242 (417)
+.+.++++++||+||.++|.+. ..++++++.+.++++++|+ ..+++.+..+.+ ..+..-+++..||-.|..
T Consensus 75 ---~~d~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~---~~~~~~r~vg~Hf~~p~~ 148 (287)
T PRK08293 75 ---TTDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAE---ATGRPEKFLALHFANEIW 148 (287)
T ss_pred ---eCCHHHHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHh---hcCCcccEEEEcCCCCCC
Confidence 4678889999999999999764 4578899999999998874 555666655443 223334799999977755
Q ss_pred hHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHH-HHHHHH
Q 014834 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHG-IVESLF 321 (417)
Q Consensus 243 ~vr~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA-~iea~~ 321 (417)
. .-..-+.++...+.+..+.+.+++..+|...++-. .+ ...-+.+-+.+ ++..+
T Consensus 149 ~--------------~~lvevv~~~~t~~~~~~~~~~~~~~~Gk~pv~v~---~d-------~pgfi~nRi~~~~~~ea- 203 (287)
T PRK08293 149 K--------------NNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIVLK---KE-------QPGYILNSLLVPFLSAA- 203 (287)
T ss_pred c--------------CCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEec---CC-------CCCHhHHHHHHHHHHHH-
Confidence 4 12233556777888999999999999996422110 01 11223332222 32222
Q ss_pred HHHHHcCC-CHHHHHHHH---HHHHHHHHHHHHHHhcHHHHHhcc
Q 014834 322 RRFTENGM-SEDLAYKNT---VECITGIISKIISTQGMLAVYNSF 362 (417)
Q Consensus 322 d~~v~~Gl-~~e~A~~~~---~q~~~~g~~~li~e~G~~~l~~~v 362 (417)
-.+++.|+ ++++--+.. ...-. |--+++-..|++.+++..
T Consensus 204 ~~l~~~g~a~~~~iD~a~~~~~g~~~-Gp~~~~D~~Gld~~~~~~ 247 (287)
T PRK08293 204 LALWAKGVADPETIDKTWMIATGAPM-GPFGILDIVGLDTAYNIT 247 (287)
T ss_pred HHHHHcCCCCHHHHHHHHHhccCCCc-CHHHHHHHhchHHHHHHH
Confidence 23467775 465443322 12122 555667777776555444
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-11 Score=124.03 Aligned_cols=195 Identities=15% Similarity=0.110 Sum_probs=116.5
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHc--------CceecC--CCcCCHHhhcCcCC
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--------GFTEEN--GTLGDIYETISGSD 180 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~--------G~~~~~--~~~~s~~Ea~~~AD 180 (417)
++||+|||+|+||.++|.+|.+. |++|.+++|+.++ .+...+. |..... ....+++|+++++|
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~------G~~V~~~~r~~~~-~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD 76 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASK------GVPVRLWARRPEF-AAALAAERENREYLPGVALPAELYPTADPEEALAGAD 76 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHC------CCeEEEEeCCHHH-HHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCC
Confidence 37999999999999999999999 9999988886433 2222222 311000 01457888899999
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEE-EecCch-----hhhhhhccc-CCCCCccEEEeccCCCchhHHHHHhhccc
Q 014834 181 LVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFL-----LGHLQSIGL-DFPKNIGVIAVCPKGMGPSVRRLYVQGKE 253 (417)
Q Consensus 181 IViLavpd~~~~~Vl~eI~~~lk~gaiLi-~a~G~~-----i~~~~~~~i-~~~~dv~VI~v~Pntpg~~vr~ly~~G~~ 253 (417)
+||+++|+....+++ +.++++.+|+ .+.|+. ...+.+... .....+ .++..|+.+...
T Consensus 77 ~Vi~~v~~~~~~~v~----~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~-~~~~gP~~a~~~---------- 141 (328)
T PRK14618 77 FAVVAVPSKALRETL----AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARV-AVLSGPNHAEEI---------- 141 (328)
T ss_pred EEEEECchHHHHHHH----HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCe-EEEECccHHHHH----------
Confidence 999999999766665 4456777654 667764 222221000 011122 456788776555
Q ss_pred ccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccc---------hhhhchHHH---------
Q 014834 254 INGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGER---------GILLGAVHG--------- 315 (417)
Q Consensus 254 ~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~---------t~L~G~~pA--------- 315 (417)
+.|.+.+.... ..+.+..+.+..++...|.. + ....|..+.. +.-+|.+.+
T Consensus 142 --~~~~~~~~~~~-~~~~~~~~~v~~ll~~~~~~-v-------~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~ 210 (328)
T PRK14618 142 --ARFLPAATVVA-SPEPGLARRVQAAFSGPSFR-V-------YTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKA 210 (328)
T ss_pred --HcCCCeEEEEE-eCCHHHHHHHHHHhCCCcEE-E-------EecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHH
Confidence 34443322221 23557788888999888753 1 1222333322 111344433
Q ss_pred -----HHHHHHHHHHHcCCCHHHHHHHH
Q 014834 316 -----IVESLFRRFTENGMSEDLAYKNT 338 (417)
Q Consensus 316 -----~iea~~d~~v~~Gl~~e~A~~~~ 338 (417)
.+.-+...+.+.|++++..+..+
T Consensus 211 ~~~~~~~~E~~~la~~~G~~~~~~~~~~ 238 (328)
T PRK14618 211 ALITRGLREMVRFGVALGAEEATFYGLS 238 (328)
T ss_pred HHHHHHHHHHHHHHHHhCCCccchhcCc
Confidence 12235556678899998888763
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.7e-11 Score=116.78 Aligned_cols=193 Identities=17% Similarity=0.147 Sum_probs=122.3
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCchHH
Q 014834 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQA 192 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~~~ 192 (417)
||||||+|+||.++|.+|.+. |++|++++|+.+ ..+.+.+.|... ..+..+++++||+||+++|+..+.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~------G~~V~~~dr~~~-~~~~~~~~g~~~----~~~~~~~~~~aDivi~~vp~~~~~ 69 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA------GYQLHVTTIGPE-VADELLAAGAVT----AETARQVTEQADVIFTMVPDSPQV 69 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC------CCeEEEEcCCHH-HHHHHHHCCCcc----cCCHHHHHhcCCEEEEecCCHHHH
Confidence 599999999999999999999 999988877643 455666677754 568889999999999999987654
Q ss_pred -HHH---HHHHhcCCCCcEEEEecCchhh---hhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEee
Q 014834 193 -DNY---EKIFSCMKPNSILGLSHGFLLG---HLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (417)
Q Consensus 193 -~Vl---~eI~~~lk~gaiLi~a~G~~i~---~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav 265 (417)
.++ +.+.+.+++|++|++.+..... .+.+ ....+++.++- +|-. +... ... .|...++.
T Consensus 70 ~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~--~l~~~g~~~~~-~pv~-g~~~--~a~-------~g~l~i~~- 135 (291)
T TIGR01505 70 EEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAK--AVKEKGIDYLD-APVS-GGEI--GAI-------EGTLSIMV- 135 (291)
T ss_pred HHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCCEEe-cCCC-CCHH--HHh-------cCCEEEEe-
Confidence 455 3477888999999887766542 2222 01123566665 5632 2111 111 23333233
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhh-chHHH-HHHH---HHHHHHHcCCCHHHHHHHHH
Q 014834 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILL-GAVHG-IVES---LFRRFTENGMSEDLAYKNTV 339 (417)
Q Consensus 266 ~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~-G~~pA-~iea---~~d~~v~~Gl~~e~A~~~~~ 339 (417)
.. +++..+.+..++..+|.. ++..- .... ++.+-++ +...+ .+++ ++..+.+.|+++++.++..-
T Consensus 136 gg--~~~~~~~~~~ll~~lg~~-~~~~g---~~g~---a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~ 205 (291)
T TIGR01505 136 GG--DQAVFDRVKPLFEALGKN-IVLVG---GNGD---GQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALR 205 (291)
T ss_pred cC--CHHHHHHHHHHHHHhcCC-eEEeC---CCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 33 468889999999999964 21110 0000 1111122 22222 2333 44556789999998886443
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.5e-11 Score=117.73 Aligned_cols=196 Identities=17% Similarity=0.104 Sum_probs=121.8
Q ss_pred EEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCch-HHHH
Q 014834 116 VIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADN 194 (417)
Q Consensus 116 IIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~-~~~V 194 (417)
|||+|+||.+||++|.+. |++|.+++|+.++ .+...+.|... ..++.++++++|+||+++|+.. ..++
T Consensus 1 ~IGlG~mG~~mA~~L~~~------G~~V~v~dr~~~~-~~~l~~~g~~~----~~s~~~~~~~advVil~vp~~~~~~~v 69 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKA------GHPVRVFDLFPDA-VEEAVAAGAQA----AASPAEAAEGADRVITMLPAGQHVISV 69 (288)
T ss_pred CCcccHhHHHHHHHHHhC------CCeEEEEeCCHHH-HHHHHHcCCee----cCCHHHHHhcCCEEEEeCCChHHHHHH
Confidence 699999999999999999 9999988877543 55566678764 5688999999999999999855 4678
Q ss_pred H---HHHHhcCCCCcEEEEecCchhhhhhhc-ccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeecCCCC
Q 014834 195 Y---EKIFSCMKPNSILGLSHGFLLGHLQSI-GLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (417)
Q Consensus 195 l---~eI~~~lk~gaiLi~a~G~~i~~~~~~-~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~dvs 270 (417)
+ +++.+.+++|++|++++++........ ......+++++- +|-.-+. ...+.| -..+++ .. +
T Consensus 70 ~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vd-aPv~Gg~---~~a~~g-------~l~~~~-gg--~ 135 (288)
T TIGR01692 70 YSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMD-APVSGGV---GGARAG-------TLTFMV-GG--V 135 (288)
T ss_pred HcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEE-CCCCCCH---HHHhhC-------cEEEEE-CC--C
Confidence 7 578889999999999988864322110 011124566664 3533222 223333 333222 33 3
Q ss_pred HHHHHHHHHHHHHhCCCceeccc-hhhhhhhhccccchhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 014834 271 GRATNVALGWSVALGSPFTFATT-LEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTV 339 (417)
Q Consensus 271 gea~e~a~~L~~alG~~~~iett-f~~e~~~dl~ge~t~L~G~~pA~iea~~d~~v~~Gl~~e~A~~~~~ 339 (417)
.+..+.+..++..+|... +..- ...-...++.. ...+.+...++.| ++..+.+.|++++..+....
T Consensus 136 ~~~~~~~~~~l~~~g~~~-~~~g~~g~g~~~Kl~~-n~~~~~~~~~~~E-a~~la~~~Gld~~~~~~~~~ 202 (288)
T TIGR01692 136 AEEFAAAEPVLGPMGRNI-VHCGDHGAGQAAKICN-NMLLGISMIGTAE-AMALGEKLGLDPKVLFEIAN 202 (288)
T ss_pred HHHHHHHHHHHHHhcCCe-EeeCCCCHHHHHHHHH-HHHHHHHHHHHHH-HHHHHHHcCCCHHHHHHHHh
Confidence 477888999999999742 1110 00000111111 1111111222233 33456899999998876433
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.2e-12 Score=110.21 Aligned_cols=113 Identities=27% Similarity=0.316 Sum_probs=72.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH-cCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~-~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~ 190 (417)
.||+|||.|+.|.++++.|.+. |++|...+.+...+.+++.+ .+-. ...+..|+++++|+|||+|||..
T Consensus 11 l~I~iIGaGrVG~~La~aL~~a------g~~v~~v~srs~~sa~~a~~~~~~~----~~~~~~~~~~~aDlv~iavpDda 80 (127)
T PF10727_consen 11 LKIGIIGAGRVGTALARALARA------GHEVVGVYSRSPASAERAAAFIGAG----AILDLEEILRDADLVFIAVPDDA 80 (127)
T ss_dssp -EEEEECTSCCCCHHHHHHHHT------TSEEEEESSCHH-HHHHHHC--TT---------TTGGGCC-SEEEE-S-CCH
T ss_pred cEEEEECCCHHHHHHHHHHHHC------CCeEEEEEeCCcccccccccccccc----cccccccccccCCEEEEEechHH
Confidence 6999999999999999999999 99875433332334444433 2222 25678899999999999999999
Q ss_pred HHHHHHHHHhc--CCCCcEEEEecCch-hhhhhhcccCCCCCccEEEecc
Q 014834 191 QADNYEKIFSC--MKPNSILGLSHGFL-LGHLQSIGLDFPKNIGVIAVCP 237 (417)
Q Consensus 191 ~~~Vl~eI~~~--lk~gaiLi~a~G~~-i~~~~~~~i~~~~dv~VI~v~P 237 (417)
+.++.++|... .++|++|++++|-. ..-++- .-..+.-+..+||
T Consensus 81 I~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p---~~~~Ga~~~s~HP 127 (127)
T PF10727_consen 81 IAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAP---ARERGAIVASLHP 127 (127)
T ss_dssp HHHHHHHHHCC--S-TT-EEEES-SS--GGGGHH---HHHTT-EEEEEEE
T ss_pred HHHHHHHHHHhccCCCCcEEEECCCCChHHhhhh---HHHCCCeEEEeCc
Confidence 99999999987 89999999999963 222211 0013445666776
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.1e-11 Score=124.71 Aligned_cols=152 Identities=14% Similarity=0.060 Sum_probs=104.5
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH---cCceecCCCcCCHHhhcCc---CCEEEE
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISG---SDLVLL 184 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~---~G~~~~~~~~~s~~Ea~~~---ADIViL 184 (417)
+.+|||||+|+||.+||+||.+. |++|.|++|+.++..+...+ .|... -....+++|+++. +|+||+
T Consensus 6 ~~~IG~IGLG~MG~~mA~nL~~~------G~~V~V~NRt~~k~~~l~~~~~~~Ga~~-~~~a~s~~e~v~~l~~~dvIi~ 78 (493)
T PLN02350 6 LSRIGLAGLAVMGQNLALNIAEK------GFPISVYNRTTSKVDETVERAKKEGNLP-LYGFKDPEDFVLSIQKPRSVII 78 (493)
T ss_pred CCCEEEEeeHHHHHHHHHHHHhC------CCeEEEECCCHHHHHHHHHhhhhcCCcc-cccCCCHHHHHhcCCCCCEEEE
Confidence 46899999999999999999999 99999999986655444332 24320 0014688888876 999999
Q ss_pred ccCCchHH-HHHHHHHhcCCCCcEEEEecCchhh---hhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCce
Q 014834 185 LISDAAQA-DNYEKIFSCMKPNSILGLSHGFLLG---HLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (417)
Q Consensus 185 avpd~~~~-~Vl~eI~~~lk~gaiLi~a~G~~i~---~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~ 260 (417)
++|+.... +|++.+.+.+++|++|++.+-.... ...+ ..-.+++.++ -+|-.=+... =+ .|-
T Consensus 79 ~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~--~l~~~Gi~fl-dapVSGG~~g---A~-------~G~- 144 (493)
T PLN02350 79 LVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIK--EAAEKGLLYL-GMGVSGGEEG---AR-------NGP- 144 (493)
T ss_pred ECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHH--HHHHcCCeEE-eCCCcCCHHH---hc-------CCC-
Confidence 99987764 6888899999999999988755321 1111 1113456655 3452222220 01 344
Q ss_pred EEEeecCCCCHHHHHHHHHHHHHhCC
Q 014834 261 SSFAVHQDVDGRATNVALGWSVALGS 286 (417)
Q Consensus 261 ~liav~~dvsgea~e~a~~L~~alG~ 286 (417)
+ +-+.. +.++.+.++.++..+|.
T Consensus 145 ~-im~GG--~~~a~~~v~pvL~~ia~ 167 (493)
T PLN02350 145 S-LMPGG--SFEAYKNIEDILEKVAA 167 (493)
T ss_pred e-EEecC--CHHHHHHHHHHHHHHhh
Confidence 4 44455 45799999999999995
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.5e-10 Score=113.92 Aligned_cols=198 Identities=17% Similarity=0.191 Sum_probs=119.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~ 190 (417)
+++|||||+|.||.++|++|.+. |++|++++++.+ ..+.+.+.|... +.+.+|+++++|+||+++|+..
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~------g~~v~~~d~~~~-~~~~~~~~g~~~----~~~~~e~~~~~d~vi~~vp~~~ 70 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKA------GYSLVVYDRNPE-AVAEVIAAGAET----ASTAKAVAEQCDVIITMLPNSP 70 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHC------CCeEEEEcCCHH-HHHHHHHCCCee----cCCHHHHHhcCCEEEEeCCCHH
Confidence 37899999999999999999998 999887776543 345556667664 5678899999999999999876
Q ss_pred HH-HHH---HHHHhcCCCCcEEEEecCchhh---hhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEE
Q 014834 191 QA-DNY---EKIFSCMKPNSILGLSHGFLLG---HLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (417)
Q Consensus 191 ~~-~Vl---~eI~~~lk~gaiLi~a~G~~i~---~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~li 263 (417)
.. .++ +++.+.+++|++|++++.+... .+.+ . ...++++++- +|-.-+.. .-. .|...++
T Consensus 71 ~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~-~-~~~~g~~~~d-~pv~g~~~---~a~-------~g~l~i~ 137 (296)
T PRK11559 71 HVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAA-A-LKAKGIEMLD-APVSGGEP---KAI-------DGTLSVM 137 (296)
T ss_pred HHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHH-H-HHHcCCcEEE-cCCCCCHH---HHh-------hCcEEEE
Confidence 54 455 3578889999999988877543 2222 0 1112444432 24221111 001 2333323
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCceeccc-hhhhhhhhccccchhhhchHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 014834 264 AVHQDVDGRATNVALGWSVALGSPFTFATT-LEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNT 338 (417)
Q Consensus 264 av~~dvsgea~e~a~~L~~alG~~~~iett-f~~e~~~dl~ge~t~L~G~~pA~iea~~d~~v~~Gl~~e~A~~~~ 338 (417)
. .. +.+..+.+..++..+|... +..- ...-....+. ....+.+. .+++--++..+.+.|+++++.++..
T Consensus 138 ~-gg--~~~~~~~~~~~l~~~~~~~-~~~g~~g~a~~~Kl~-~n~~~~~~-~~~~~Ea~~l~~~~Gi~~~~~~~~l 207 (296)
T PRK11559 138 V-GG--DKAIFDKYYDLMKAMAGSV-VHTGDIGAGNVTKLA-NQVIVALN-IAAMSEALVLATKAGVNPDLVYQAI 207 (296)
T ss_pred E-CC--CHHHHHHHHHHHHHhcCCe-EEeCCcCHHHHHHHH-HHHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 3 33 4678899999999999741 1110 0000000000 01111111 1223334566678999999877543
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.6e-10 Score=114.70 Aligned_cols=147 Identities=18% Similarity=0.129 Sum_probs=104.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCc---CCEEEEccCC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG---SDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~---ADIViLavpd 188 (417)
+||||||+|+||.+||++|.+. |++|.+++++.++ .+.+.+.|+.. ..+++|+++. +|+|++++|+
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~------g~~v~v~dr~~~~-~~~~~~~g~~~----~~~~~e~~~~~~~~dvvi~~v~~ 69 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRG------GHEVVGYDRNPEA-VEALAEEGATG----ADSLEELVAKLPAPRVVWLMVPA 69 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHC------CCeEEEEECCHHH-HHHHHHCCCee----cCCHHHHHhhcCCCCEEEEEecC
Confidence 4899999999999999999999 9999888877544 45556678775 5678888875 6999999999
Q ss_pred c-hHHHHHHHHHhcCCCCcEEEEecCchh---hhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEe
Q 014834 189 A-AQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (417)
Q Consensus 189 ~-~~~~Vl~eI~~~lk~gaiLi~a~G~~i---~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~lia 264 (417)
. ...++++.+.+.+++|+++++++.... ..+.+ ..-..++.++- +|..=+... =+ .|. .++
T Consensus 70 ~~~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~--~~~~~g~~~~d-apvsG~~~~---a~-------~g~-~~~- 134 (301)
T PRK09599 70 GEITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAE--LLAEKGIHFVD-VGTSGGVWG---LE-------RGY-CLM- 134 (301)
T ss_pred CcHHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHH--HHHHcCCEEEe-CCCCcCHHH---Hh-------cCC-eEE-
Confidence 8 557888889999999998887765432 11211 11134667774 674433221 11 354 323
Q ss_pred ecCCCCHHHHHHHHHHHHHhCC
Q 014834 265 VHQDVDGRATNVALGWSVALGS 286 (417)
Q Consensus 265 v~~dvsgea~e~a~~L~~alG~ 286 (417)
+.. +.+..+.+..++..+|.
T Consensus 135 ~gG--~~~~~~~~~~~l~~~~~ 154 (301)
T PRK09599 135 IGG--DKEAVERLEPIFKALAP 154 (301)
T ss_pred ecC--CHHHHHHHHHHHHHHcc
Confidence 343 45788999999999997
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.3e-10 Score=114.38 Aligned_cols=148 Identities=20% Similarity=0.252 Sum_probs=108.8
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHH-----------HcCc-------------eecC
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-----------AAGF-------------TEEN 166 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~-----------~~G~-------------~~~~ 166 (417)
++||+|||+|.||.++|.+|..+ |++|++++++.+. .+.+. +.|. ..
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~------G~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-- 74 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALA------GYDVLLNDVSADR-LEAGLATINGNLARQVAKGKISEEARAAALARIST-- 74 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe--
Confidence 48999999999999999999999 9999988876432 22221 1232 21
Q ss_pred CCcCCHHhhcCcCCEEEEccCCchH--HHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchh
Q 014834 167 GTLGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPS 243 (417)
Q Consensus 167 ~~~~s~~Ea~~~ADIViLavpd~~~--~~Vl~eI~~~lk~gaiLi-~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~ 243 (417)
..++ +.+++||+||.++|...+ ..++.+|.+.++++++|+ .++++.+..+.+ .....-+++.+|+--|.+.
T Consensus 75 --~~~~-~~~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~---~~~~~~r~~g~h~~~p~~~ 148 (292)
T PRK07530 75 --ATDL-EDLADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLAS---ATDRPERFIGIHFMNPVPV 148 (292)
T ss_pred --eCCH-HHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCcccEEEeeccCCccc
Confidence 3455 457899999999998644 468888999999999875 888888766655 2223346888888777665
Q ss_pred HHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 244 VRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 244 vr~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~ 287 (417)
. .++ - +.++...+.+..+.+..++..+|..
T Consensus 149 ~------------~~v-e-i~~g~~t~~~~~~~~~~~~~~~gk~ 178 (292)
T PRK07530 149 M------------KLV-E-LIRGIATDEATFEAAKEFVTKLGKT 178 (292)
T ss_pred C------------ceE-E-EeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 2 223 3 4456667889999999999999964
|
|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.5e-10 Score=119.37 Aligned_cols=151 Identities=14% Similarity=0.084 Sum_probs=102.0
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH---cCceecCCCcCCHHhhcC---cCCEEEE
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETIS---GSDLVLL 184 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~---~G~~~~~~~~~s~~Ea~~---~ADIViL 184 (417)
|.+|||||+|+||.+||+||.++ |++|.+++|+.++..+.... .|... ..+.+++|+++ ++|+|++
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~------G~~V~v~dr~~~~~~~l~~~~~~~g~~i--~~~~s~~e~v~~l~~~d~Iil 72 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASR------GFKISVYNRTYEKTEEFVKKAKEGNTRV--KGYHTLEELVNSLKKPRKVIL 72 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHhhhhcCCcc--eecCCHHHHHhcCCCCCEEEE
Confidence 46899999999999999999999 99999998875553333221 25221 11568888886 5899999
Q ss_pred ccCCchH-HHHHHHHHhcCCCCcEEEEecCch----hhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCc
Q 014834 185 LISDAAQ-ADNYEKIFSCMKPNSILGLSHGFL----LGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (417)
Q Consensus 185 avpd~~~-~~Vl~eI~~~lk~gaiLi~a~G~~----i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv 259 (417)
++||... .++++++.++|++|++|++.+-.. .....+ ...+++.++ -+|-.=+.. .-+ .|-
T Consensus 73 ~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~---l~~~Gi~fl-dapVSGG~~---gA~-------~G~ 138 (470)
T PTZ00142 73 LIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKR---CEEKGILYL-GMGVSGGEE---GAR-------YGP 138 (470)
T ss_pred EeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHH---HHHcCCeEE-cCCCCCCHH---HHh-------cCC
Confidence 9777654 679999999999999999876532 111111 223466655 334221211 111 243
Q ss_pred eEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 260 NSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 260 ~~liav~~dvsgea~e~a~~L~~alG~~ 287 (417)
+ +-+.. +.++.+.++.++..+|..
T Consensus 139 -~-lm~GG--~~~a~~~~~piL~~ia~~ 162 (470)
T PTZ00142 139 -S-LMPGG--NKEAYDHVKDILEKCSAK 162 (470)
T ss_pred -E-EEEeC--CHHHHHHHHHHHHHHhhh
Confidence 4 44455 458999999999999863
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.6e-10 Score=113.94 Aligned_cols=152 Identities=16% Similarity=0.132 Sum_probs=111.1
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHH-----------HHHcCceecC-----CCcCCHHh
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN-----GTLGDIYE 174 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~-----------A~~~G~~~~~-----~~~~s~~E 174 (417)
++||+|||+|.||.+||..+..+ |++|.++++..+. .+. ..+.|..... ..+.++++
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~a------G~~V~l~D~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~ 79 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAH------GLDVVAWDPAPGA-EAALRANVANAWPALERQGLAPGASPARLRFVATIEA 79 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHH
Confidence 58999999999999999999999 9999988876432 111 1112221100 11457889
Q ss_pred hcCcCCEEEEccCCchHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhc
Q 014834 175 TISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251 (417)
Q Consensus 175 a~~~ADIViLavpd~~~~--~Vl~eI~~~lk~gaiLi-~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G 251 (417)
++++||+|+-++|..... +++.+|.+.++++++|. -++++.+..+.+ .....-+++..||=-|.+.
T Consensus 80 av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~---~~~~p~R~~g~HffnP~~~-------- 148 (321)
T PRK07066 80 CVADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYA---RATHPERCVVGHPFNPVYL-------- 148 (321)
T ss_pred HhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHH---hcCCcccEEEEecCCcccc--------
Confidence 999999999999977653 58889999999999765 455776655554 2233347999999888876
Q ss_pred ccccCCCceEE-EeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 252 KEINGAGINSS-FAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 252 ~~~~G~Gv~~l-iav~~dvsgea~e~a~~L~~alG~~ 287 (417)
++.+ +.++...+.+..+.+.+++..+|..
T Consensus 149 -------~pLVEVv~g~~T~~e~~~~~~~f~~~lGk~ 178 (321)
T PRK07066 149 -------LPLVEVLGGERTAPEAVDAAMGIYRALGMR 178 (321)
T ss_pred -------CceEEEeCCCCCCHHHHHHHHHHHHHcCCE
Confidence 3331 3456677889999999999999964
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.3e-10 Score=120.64 Aligned_cols=148 Identities=16% Similarity=0.109 Sum_probs=101.4
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHc--C--ceecCCCcCCHHhhc---CcCCEEEEc
Q 014834 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--G--FTEENGTLGDIYETI---SGSDLVLLL 185 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~--G--~~~~~~~~~s~~Ea~---~~ADIViLa 185 (417)
+|||||+|+||.+||+||.+. |++|.+++|+.++..+...+. | +.. ..++++++ +++|+|+++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~------G~~V~v~drt~~~~~~l~~~~~~g~~~~~----~~s~~e~v~~l~~~dvIil~ 70 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH------GFTVSVYNRTPEKTDEFLAEHAKGKKIVG----AYSIEEFVQSLERPRKIMLM 70 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc------CCeEEEEeCCHHHHHHHHhhccCCCCcee----cCCHHHHHhhcCCCCEEEEE
Confidence 489999999999999999999 999999998765544443331 2 333 45677766 468999999
Q ss_pred cCCc-hHHHHHHHHHhcCCCCcEEEEecCchh---hhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceE
Q 014834 186 ISDA-AQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINS 261 (417)
Q Consensus 186 vpd~-~~~~Vl~eI~~~lk~gaiLi~a~G~~i---~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~ 261 (417)
+|+. ...++++++.+++++|++|++.+-... ..... ..-.+++.++-....+ +.. .-+ .|- +
T Consensus 71 v~~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~--~l~~~gi~fvdapVsG-G~~---gA~-------~G~-~ 136 (467)
T TIGR00873 71 VKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYK--ELKAKGILFVGSGVSG-GEE---GAR-------KGP-S 136 (467)
T ss_pred CCCcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHH--HHHhcCCEEEcCCCCC-CHH---HHh-------cCC-c
Confidence 9984 556899999999999999998875321 11111 1224567766544333 221 111 343 3
Q ss_pred EEeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 262 SFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 262 liav~~dvsgea~e~a~~L~~alG~~ 287 (417)
+-+.. +.++.+.++.++..++..
T Consensus 137 -im~GG--~~~a~~~~~p~L~~ia~~ 159 (467)
T TIGR00873 137 -IMPGG--SAEAWPLVAPIFQKIAAK 159 (467)
T ss_pred -CCCCC--CHHHHHHHHHHHHHHhhh
Confidence 33454 458999999999999864
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.1e-10 Score=113.19 Aligned_cols=171 Identities=13% Similarity=0.134 Sum_probs=107.0
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcC---------ceecC--CCcCCHHhhcCcC
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG---------FTEEN--GTLGDIYETISGS 179 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G---------~~~~~--~~~~s~~Ea~~~A 179 (417)
++||+|||.|+||.++|..|.+. | +++++.++.. ..+...+.+ +...+ ....+..++++++
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~------g-~v~l~~~~~~-~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~a 78 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARR------G-PTLQWVRSAE-TADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCA 78 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHC------C-CEEEEeCCHH-HHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcC
Confidence 47999999999999999999998 8 4555655432 233333322 11000 0134677889999
Q ss_pred CEEEEccCCchHHHHHHHHHhcCCCCc-EEEEecCchh-------hhhhhcccCCCCCccEEEeccCCCchhHHHHHhhc
Q 014834 180 DLVLLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLL-------GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251 (417)
Q Consensus 180 DIViLavpd~~~~~Vl~eI~~~lk~ga-iLi~a~G~~i-------~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G 251 (417)
|+||+++|++...+++++|.+++++++ +|++..|+.. ..+.+ .+|..-.+++..|+.+..+
T Consensus 79 DlVilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~---~l~~~~~~~l~GP~~a~ev-------- 147 (341)
T PRK12439 79 DVVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEE---VLPGHPAGILAGPNIAREV-------- 147 (341)
T ss_pred CEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHH---HcCCCCeEEEECCCHHHHH--------
Confidence 999999999999999999999998887 4568889864 23433 2343334567889876655
Q ss_pred ccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHH
Q 014834 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHG 315 (417)
Q Consensus 252 ~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA 315 (417)
+.|.++.+.+... +.+..+.+.+++..-| |+.....|+.+.+ ++|.+--
T Consensus 148 ----~~g~~t~~via~~-~~~~~~~v~~lf~~~~--------~~v~~s~Di~gve--~~~alkN 196 (341)
T PRK12439 148 ----AEGYAAAAVLAMP-DQHLATRLSPLFRTRR--------FRVYTTDDVVGVE--MAGALKN 196 (341)
T ss_pred ----HcCCCeEEEEEeC-CHHHHHHHHHHhCCCC--------EEEEEcCchHHHH--HHHHHHH
Confidence 3566553333332 3333344444444333 2224455556544 5554433
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.9e-10 Score=107.10 Aligned_cols=91 Identities=25% Similarity=0.281 Sum_probs=76.1
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHH-HHHcCceecCCCcCCHHhhcCcCCEEEEccCCc
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-ARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~-A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~ 189 (417)
||+|+|||.|+||.++|+.|.+. |++|+++.|+.+++.+. +.+.+... +..+++++++.+|+|||++|-.
T Consensus 1 m~~~~i~GtGniG~alA~~~a~a------g~eV~igs~r~~~~~~a~a~~l~~~i---~~~~~~dA~~~aDVVvLAVP~~ 71 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKA------GHEVIIGSSRGPKALAAAAAALGPLI---TGGSNEDAAALADVVVLAVPFE 71 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhC------CCeEEEecCCChhHHHHHHHhhcccc---ccCChHHHHhcCCEEEEeccHH
Confidence 68999999999999999999999 99999998876655433 33444432 1468999999999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEe
Q 014834 190 AQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 190 ~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
.+.+++.++...+. |++|+++
T Consensus 72 a~~~v~~~l~~~~~-~KIvID~ 92 (211)
T COG2085 72 AIPDVLAELRDALG-GKIVIDA 92 (211)
T ss_pred HHHhHHHHHHHHhC-CeEEEec
Confidence 99999999998886 8888755
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.4e-09 Score=115.80 Aligned_cols=149 Identities=15% Similarity=0.187 Sum_probs=111.1
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHH-----------HHHcC-------------ceec
Q 014834 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAG-------------FTEE 165 (417)
Q Consensus 110 gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~-----------A~~~G-------------~~~~ 165 (417)
.+++|||||+|.||..||.++..+ |++|++++++.+. .+. ..+.| +..
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~a------G~~V~l~D~~~e~-l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~- 77 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQA------GHTVLLYDARAGA-AAAARDGIAARLAKLVEKGKLTAEQADAALARLRP- 77 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-
Confidence 358999999999999999999999 9999988877543 222 23445 233
Q ss_pred CCCcCCHHhhcCcCCEEEEccCCchHH--HHHHHHHhcCCCCcEE-EEecCchhhhhhhcccCCCCCccEEEeccCCCch
Q 014834 166 NGTLGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSIL-GLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGP 242 (417)
Q Consensus 166 ~~~~~s~~Ea~~~ADIViLavpd~~~~--~Vl~eI~~~lk~gaiL-i~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~ 242 (417)
..++++ +.+||+||-++|..... .++.++...++++++| +.++.+.+..+.. .....-+++.+|.--|.+
T Consensus 78 ---~~~~~~-~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~---~~~~p~r~~G~hff~Pa~ 150 (507)
T PRK08268 78 ---VEALAD-LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAA---ALKHPERVAGLHFFNPVP 150 (507)
T ss_pred ---eCCHHH-hCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCcccEEEEeecCCcc
Confidence 456655 56999999999987764 4777888888899988 4788888766654 222223688888888887
Q ss_pred hHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 243 ~vr~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~ 287 (417)
.+ ...- +..+...+.+..+.+..++..+|..
T Consensus 151 v~-------------~LvE-vv~g~~Ts~~~~~~~~~l~~~lgk~ 181 (507)
T PRK08268 151 LM-------------KLVE-VVSGLATDPAVADALYALARAWGKT 181 (507)
T ss_pred cC-------------eeEE-EeCCCCCCHHHHHHHHHHHHHcCCc
Confidence 72 1333 4446667789999999999999975
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.2e-09 Score=127.78 Aligned_cols=203 Identities=16% Similarity=0.117 Sum_probs=123.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~ 190 (417)
+++|||||+|+||.+||.+|.+. |++|.+++++.++ .+...+.|... ..++.+++++||+||+++|+..
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~------G~~V~v~dr~~~~-~~~l~~~Ga~~----~~s~~e~~~~aDvVi~~V~~~~ 392 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKS------NFSVCGYDVYKPT-LVRFENAGGLA----GNSPAEVAKDVDVLVIMVANEV 392 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHC------CCEEEEEeCCHHH-HHHHHHcCCee----cCCHHHHHhcCCEEEEecCChH
Confidence 48999999999999999999999 9999988887544 34445567654 5689999999999999999555
Q ss_pred H-HHHHH---HHHhcCCCCcEEEEecCchhhh---hhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEE
Q 014834 191 Q-ADNYE---KIFSCMKPNSILGLSHGFLLGH---LQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (417)
Q Consensus 191 ~-~~Vl~---eI~~~lk~gaiLi~a~G~~i~~---~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~li 263 (417)
+ .+|+. .+.+.+++|+++++++-+.... +.+.....+.++.++ =+|-..++.. - ..|-..++
T Consensus 393 ~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~l-DAPVsGg~~~---A-------~~G~L~im 461 (1378)
T PLN02858 393 QAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLV-DAPVSGGVKR---A-------AMGTLTIM 461 (1378)
T ss_pred HHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEE-EccCCCChhh---h-------hcCCceEE
Confidence 4 57772 4788899999999887665332 211000001355544 3343333321 1 13332323
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCcee-ccchhhhhhhhccccchhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 014834 264 AVHQDVDGRATNVALGWSVALGSPFTF-ATTLEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVE 340 (417)
Q Consensus 264 av~~dvsgea~e~a~~L~~alG~~~~i-ettf~~e~~~dl~ge~t~L~G~~pA~iea~~d~~v~~Gl~~e~A~~~~~q 340 (417)
+ .. +.+..+.+..++..+|....+ --..-.-...++..- .+.++.-+.+--++..+.++|++++..++....
T Consensus 462 v-gG--~~~~~~~~~plL~~lg~~i~~~~g~~G~a~~~KL~nN--~l~~~~~aa~aEal~la~k~Gld~~~l~evl~~ 534 (1378)
T PLN02858 462 A-SG--TDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMVNQ--LLAGVHIASAAEAMAFGARLGLNTRKLFDIISN 534 (1378)
T ss_pred E-EC--CHHHHHHHHHHHHHHhCcEEEeCCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3 33 457899999999999964211 000000000011100 112221122222344567899999988875443
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.2e-09 Score=108.22 Aligned_cols=202 Identities=16% Similarity=0.117 Sum_probs=116.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHH------------------HcC-ceecCCCcCCH
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR------------------AAG-FTEENGTLGDI 172 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~------------------~~G-~~~~~~~~~s~ 172 (417)
+||+|||+|.||.++|.+|.+. |++|++++++..+...... +.| +.. ..+.
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~------G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~----~~~~ 70 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADL------GHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRA----TTDY 70 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhc------CCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEE----ECCH
Confidence 4899999999999999999999 9999877765433222111 123 332 4577
Q ss_pred HhhcCcCCEEEEccCCch----------HHHHHHHHHhcCCCCcEEEEecCchhh---hhhhccc-C---CCCCcc-EEE
Q 014834 173 YETISGSDLVLLLISDAA----------QADNYEKIFSCMKPNSILGLSHGFLLG---HLQSIGL-D---FPKNIG-VIA 234 (417)
Q Consensus 173 ~Ea~~~ADIViLavpd~~----------~~~Vl~eI~~~lk~gaiLi~a~G~~i~---~~~~~~i-~---~~~dv~-VI~ 234 (417)
.++++++|+||+++|+.. ..+++++|.+++++|++|++.+++... .+....+ . .....+ .+.
T Consensus 71 ~~~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~ 150 (411)
T TIGR03026 71 EDAIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYLA 150 (411)
T ss_pred HHHHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceEE
Confidence 888999999999999653 456777899999999998888765321 1110000 0 111222 256
Q ss_pred eccCCC--chhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhC-CCceeccchhhhhhhhccccchhhhc
Q 014834 235 VCPKGM--GPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALG-SPFTFATTLEQEYKSDIFGERGILLG 311 (417)
Q Consensus 235 v~Pntp--g~~vr~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG-~~~~iettf~~e~~~dl~ge~t~L~G 311 (417)
.+|... +..+.+.+. .+.++. . .+.+..+.+..++..++ ......++.. .-+.-.+-+.+ +..
T Consensus 151 ~~Pe~~~~G~~~~~~~~---------~~~iv~-G--~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~Ae~~Kl~~N~-~~a 216 (411)
T TIGR03026 151 YNPEFLREGNAVHDLLN---------PDRIVG-G--ETEEAGEAVAELYAPIIEDGPVLVTSIE-TAEMIKLAENT-FRA 216 (411)
T ss_pred ECCCcCCCCChhhhhcC---------CCEEEE-e--CCHHHHHHHHHHHHHhccCCCEEcCCHH-HHHHHHHHHHH-HHH
Confidence 667432 222111111 123222 3 36789999999999997 3322222111 11111111111 112
Q ss_pred hHHHHHHHHHHHHHHcCCCHHHHHHH
Q 014834 312 AVHGIVESLFRRFTENGMSEDLAYKN 337 (417)
Q Consensus 312 ~~pA~iea~~d~~v~~Gl~~e~A~~~ 337 (417)
.--+++--+...+.+.|+++++.+..
T Consensus 217 ~~ia~~nE~~~la~~~GiD~~~v~~~ 242 (411)
T TIGR03026 217 VKIAFANELARICEALGIDVYEVIEA 242 (411)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 22234555667777888888877653
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.3e-10 Score=105.39 Aligned_cols=107 Identities=22% Similarity=0.269 Sum_probs=80.4
Q ss_pred hccccc---ccccchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcC
Q 014834 94 VRGGRD---LFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170 (417)
Q Consensus 94 vr~g~~---~f~~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~ 170 (417)
+++|+| .... ...+.| ++|||||+|++|..+|+.|+.. |++|+++++.... .......++. ..
T Consensus 18 ~~~~~W~~~~~~~-~~~l~g-~tvgIiG~G~IG~~vA~~l~~f------G~~V~~~d~~~~~-~~~~~~~~~~-----~~ 83 (178)
T PF02826_consen 18 QRNGEWASRERFP-GRELRG-KTVGIIGYGRIGRAVARRLKAF------GMRVIGYDRSPKP-EEGADEFGVE-----YV 83 (178)
T ss_dssp HHTTBHHHHTTTT-BS-STT-SEEEEESTSHHHHHHHHHHHHT------T-EEEEEESSCHH-HHHHHHTTEE-----ES
T ss_pred HHcCCCCCCcCCC-ccccCC-CEEEEEEEcCCcCeEeeeeecC------CceeEEecccCCh-hhhcccccce-----ee
Confidence 477888 3333 489999 9999999999999999999988 9999888776432 2335566775 46
Q ss_pred CHHhhcCcCCEEEEccCCchHH-HHHH-HHHhcCCCCcEEE-EecCc
Q 014834 171 DIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILG-LSHGF 214 (417)
Q Consensus 171 s~~Ea~~~ADIViLavpd~~~~-~Vl~-eI~~~lk~gaiLi-~a~G~ 214 (417)
+++|++++||+|++++|..... .++. +.+..||+|++++ .+-|-
T Consensus 84 ~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~ 130 (178)
T PF02826_consen 84 SLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGE 130 (178)
T ss_dssp SHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGG
T ss_pred ehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchh
Confidence 9999999999999999976553 4554 5788999999888 44453
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.4e-10 Score=114.43 Aligned_cols=107 Identities=24% Similarity=0.311 Sum_probs=82.0
Q ss_pred hhcccccccc-----c---chhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCcee
Q 014834 93 IVRGGRDLFK-----L---LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (417)
Q Consensus 93 ~vr~g~~~f~-----~---~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~ 164 (417)
.+|+|+|... . ....|.| |+|||||+|+||.++|+.|+.. |++|+++++.... ....+.|+.
T Consensus 125 ~~~~g~W~~~~~~~~~~~~~g~~L~g-ktvgIiG~G~IG~~vA~~l~~~------G~~V~~~d~~~~~--~~~~~~~~~- 194 (333)
T PRK13243 125 FVRSGEWKRRGVAWHPLMFLGYDVYG-KTIGIIGFGRIGQAVARRAKGF------GMRILYYSRTRKP--EAEKELGAE- 194 (333)
T ss_pred HHHcCCCCccccccccccccccCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCCCh--hhHHHcCCE-
Confidence 4567888632 0 1267999 9999999999999999999988 9998877665322 233445654
Q ss_pred cCCCcCCHHhhcCcCCEEEEccCCchHH-HHHH-HHHhcCCCCcEEEEe-cC
Q 014834 165 ENGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLS-HG 213 (417)
Q Consensus 165 ~~~~~~s~~Ea~~~ADIViLavpd~~~~-~Vl~-eI~~~lk~gaiLi~a-~G 213 (417)
..+.+|++++||+|++++|..... .++. +.+..||+|++|+.+ -|
T Consensus 195 ----~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg 242 (333)
T PRK13243 195 ----YRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARG 242 (333)
T ss_pred ----ecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCc
Confidence 358999999999999999987654 5664 688999999998844 45
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.1e-09 Score=113.12 Aligned_cols=153 Identities=12% Similarity=0.126 Sum_probs=109.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHH----------HHHHcCceecC---------CCcCC
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA----------EARAAGFTEEN---------GTLGD 171 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~----------~A~~~G~~~~~---------~~~~s 171 (417)
++||+|||+|.||..||.++.++ |++|++++++.++..+ ...+.|..... ..+.+
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~a------G~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~ 78 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASA------GHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTD 78 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCC
Confidence 58999999999999999999999 9999998887543211 12333421000 01456
Q ss_pred HHhhcCcCCEEEEccCCchHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHH
Q 014834 172 IYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (417)
Q Consensus 172 ~~Ea~~~ADIViLavpd~~~~--~Vl~eI~~~lk~gaiLi-~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly 248 (417)
+++ +.+||+||.++|+.... .++.++.+..+++++|. -++++.+..+.. .+....+++.+|.=-|.+.+
T Consensus 79 ~~~-l~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~---~~~~p~r~~G~HFf~Papv~---- 150 (503)
T TIGR02279 79 LHA-LADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAA---GLARPERVAGLHFFNPAPVM---- 150 (503)
T ss_pred HHH-hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHH---hcCcccceEEEeccCccccC----
Confidence 655 56999999999986653 57888888888888765 667777765443 23333478898988888773
Q ss_pred hhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 249 ~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~ 287 (417)
...- +......+.+..+.+..++..+|..
T Consensus 151 ---------~LvE-vv~g~~Ts~e~~~~~~~l~~~lgk~ 179 (503)
T TIGR02279 151 ---------ALVE-VVSGLATAAEVAEQLYETALAWGKQ 179 (503)
T ss_pred ---------ceEE-EeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 2333 4446677789999999999999975
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.3e-09 Score=125.51 Aligned_cols=196 Identities=15% Similarity=0.119 Sum_probs=122.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~~ 191 (417)
++|||||+|+||.+||+||.+. |++|.+++|..++ .+...+.|... +.++.|++++||+||+++|+..+
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~------G~~v~v~dr~~~~-~~~l~~~Ga~~----~~s~~e~a~~advVi~~l~~~~~ 73 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRS------GFKVQAFEISTPL-MEKFCELGGHR----CDSPAEAAKDAAALVVVLSHPDQ 73 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHC------CCeEEEEcCCHHH-HHHHHHcCCee----cCCHHHHHhcCCEEEEEcCChHH
Confidence 7899999999999999999999 9999999887544 44555678775 67899999999999999998776
Q ss_pred H-HHH---HHHHhcCCCCcEEEEecCchhhhhhhcccCC-CCC--ccEEEeccCCCchhHHHHHhhcccccCCCceEEEe
Q 014834 192 A-DNY---EKIFSCMKPNSILGLSHGFLLGHLQSIGLDF-PKN--IGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (417)
Q Consensus 192 ~-~Vl---~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~-~~d--v~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~lia 264 (417)
. +|+ +.+.+.+++|+++++++-+......+....+ .++ +.++ =+|-.=+.. .-+.|+ .+. ++
T Consensus 74 v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~l-DaPVsGg~~---~A~~G~------L~i-mv 142 (1378)
T PLN02858 74 VDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLV-DAYVSKGMS---DLLNGK------LMI-IA 142 (1378)
T ss_pred HHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEE-EccCcCCHH---HHhcCC------eEE-EE
Confidence 4 676 3588889999999988766432221100011 123 4444 334221111 112221 333 22
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchh--h-hchHHH-HHHHHHH---HHHHcCCCHHHHHHH
Q 014834 265 VHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGI--L-LGAVHG-IVESLFR---RFTENGMSEDLAYKN 337 (417)
Q Consensus 265 v~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~--L-~G~~pA-~iea~~d---~~v~~Gl~~e~A~~~ 337 (417)
.. +.+..+.+..++..+|....+-. -+ .|.... | .+.+.+ .+.++.| .+.+.|++++..+..
T Consensus 143 -GG--~~~~~~~~~p~l~~~g~~i~~~~---G~-----~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~v 211 (1378)
T PLN02858 143 -SG--RSDAITRAQPFLSAMCQKLYTFE---GE-----IGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDI 211 (1378)
T ss_pred -cC--CHHHHHHHHHHHHHhcCceEEec---CC-----CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 33 44678999999999996411000 00 111111 1 112221 2233333 468999999988876
Q ss_pred HHH
Q 014834 338 TVE 340 (417)
Q Consensus 338 ~~q 340 (417)
...
T Consensus 212 l~~ 214 (1378)
T PLN02858 212 ISN 214 (1378)
T ss_pred Hhc
Confidence 543
|
|
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.8e-09 Score=105.63 Aligned_cols=253 Identities=15% Similarity=0.203 Sum_probs=142.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC-------cEEEEEecCChh----hHHHHHHc--------CceecCC--CcC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-------IVVKVGLRKGSR----SFAEARAA--------GFTEENG--TLG 170 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G-------~~ViVg~r~~s~----s~~~A~~~--------G~~~~~~--~~~ 170 (417)
+||+|||.|++|.|+|..|.++ | ++|.++.|+..- ..+.-.+. |+...+. .+.
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n------~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~ts 85 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGEN------TQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVS 85 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhc------CCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEec
Confidence 6899999999999999999988 6 688888776421 11111111 1111010 145
Q ss_pred CHHhhcCcCCEEEEccCCchHHHHHHHHHh--cCCCCcE-EEEecCchhhh---------hhhcccCCCCCccEEEeccC
Q 014834 171 DIYETISGSDLVLLLISDAAQADNYEKIFS--CMKPNSI-LGLSHGFLLGH---------LQSIGLDFPKNIGVIAVCPK 238 (417)
Q Consensus 171 s~~Ea~~~ADIViLavpd~~~~~Vl~eI~~--~lk~gai-Li~a~G~~i~~---------~~~~~i~~~~dv~VI~v~Pn 238 (417)
|+++++++||+|++++|++...++++++.+ +++++++ |+.+.|+.+.. +.+ .++.++ .+..-|+
T Consensus 86 dl~eav~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e---~l~~~~-~~LsGPs 161 (365)
T PTZ00345 86 DLKEAVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEE---ELGIPC-CALSGAN 161 (365)
T ss_pred CHHHHHhcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHH---HhCCCe-EEEECCC
Confidence 788999999999999999999999999998 8887764 55888985321 111 122222 2355666
Q ss_pred CCchhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHHHHH
Q 014834 239 GMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVE 318 (417)
Q Consensus 239 tpg~~vr~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA~ie 318 (417)
.+..+. .|.++.+++... ..+.+..+...+... .|+-....|+.|.+ +||.+--++-
T Consensus 162 ~A~Eva------------~~~pt~~vias~----~~~~a~~~~~lf~~~-----~frvy~s~Dv~GvE--l~galKNviA 218 (365)
T PTZ00345 162 VANDVA------------REEFSEATIGCE----DKDDALIWQRLFDRP-----YFKINCVPDVIGVE--VCGALKNIIA 218 (365)
T ss_pred HHHHHH------------cCCCcEEEEEeC----CHHHHHHHHHHhCCC-----cEEEEEcCCcccch--hhHHHHHHHH
Confidence 655442 456554444332 234455555556555 33344566777776 6676655322
Q ss_pred H--HHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHH----------HhcHHHHHhcccCchhhhhhhhhhccC--hhHHH
Q 014834 319 S--LFRRFTENGMSEDL-AYKNTVECITGIISKIIS----------TQGMLAVYNSFSGEDKKEFEKAYSASY--YPCME 383 (417)
Q Consensus 319 a--~~d~~v~~Gl~~e~-A~~~~~q~~~~g~~~li~----------e~G~~~l~~~vss~~~~~~~~~~~~~~--~~~~~ 383 (417)
- .+--+...|..-.- -+...+.||. -+++.+. -.|++.|.--|+|-....||..+.... ++..+
T Consensus 219 Ia~Gi~dGl~~G~N~kaalitrgl~Em~-~l~~a~g~~~~~~T~~glaG~GDLi~Tc~sSRN~~~G~~l~~g~~~~~~~~ 297 (365)
T PTZ00345 219 LAAGFCDGLGLGTNTKSAIIRIGLEEMK-LFGKIFFPNVMDETFFESCGLADLITTCLGGRNVRCAAEFAKRNGKKSWEE 297 (365)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHH-HHHHHhCCCCCccchhccchHhHhhhcccCCCcHHHHHHHhccCCCCCHHH
Confidence 2 22222233332222 2233444444 3333221 145566666666623356787655332 34444
Q ss_pred HHHHHHH-hhccChHH
Q 014834 384 ILYECYE-DVAAGSEI 398 (417)
Q Consensus 384 ~m~~~~~-~v~~g~~~ 398 (417)
++++++. .+..|-.+
T Consensus 298 ~~~~~~~~~~vEG~~t 313 (365)
T PTZ00345 298 IEAELLNGQKLQGTVT 313 (365)
T ss_pred HHHHhhCCcEechHHH
Confidence 5444322 34445554
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.8e-10 Score=114.49 Aligned_cols=110 Identities=19% Similarity=0.170 Sum_probs=84.9
Q ss_pred hhccccccccc---chhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCc
Q 014834 93 IVRGGRDLFKL---LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL 169 (417)
Q Consensus 93 ~vr~g~~~f~~---~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~ 169 (417)
-+++|+|.... ....|.| ++|||||+|+||..+|+.|+.. |++|+++++... ..+...+.|+.. .
T Consensus 172 ~~~~g~W~~~~~~~~~~~L~g-ktVGIvG~G~IG~~vA~~l~~f------G~~V~~~dr~~~-~~~~~~~~g~~~----~ 239 (385)
T PRK07574 172 QAVEGGWNIADCVSRSYDLEG-MTVGIVGAGRIGLAVLRRLKPF------DVKLHYTDRHRL-PEEVEQELGLTY----H 239 (385)
T ss_pred HHHhCCCCcccccccceecCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCCCC-chhhHhhcCcee----c
Confidence 35778897432 2367999 9999999999999999999988 999987776532 223334556653 4
Q ss_pred CCHHhhcCcCCEEEEccCCchHH-HHHH-HHHhcCCCCcEEEEe-cCc
Q 014834 170 GDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLS-HGF 214 (417)
Q Consensus 170 ~s~~Ea~~~ADIViLavpd~~~~-~Vl~-eI~~~lk~gaiLi~a-~G~ 214 (417)
.+++|++++||+|++++|..... .++. +.+..||+|++|+.. -|-
T Consensus 240 ~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~ 287 (385)
T PRK07574 240 VSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGK 287 (385)
T ss_pred CCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCc
Confidence 68999999999999999987764 5775 688999999998844 453
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.6e-09 Score=102.25 Aligned_cols=79 Identities=18% Similarity=0.273 Sum_probs=66.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~~ 191 (417)
+||+|||+|+||.++|+.|.+. |++|.+++|+.. .+++++++++|+||+++|+..+
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~------G~~V~~~~r~~~------------------~~~~~~~~~advvi~~vp~~~~ 60 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASAN------GHRVRVWSRRSG------------------LSLAAVLADADVIVSAVSMKGV 60 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCEEEEEeCCCC------------------CCHHHHHhcCCEEEEECChHHH
Confidence 7899999999999999999999 999998887532 2577888999999999999888
Q ss_pred HHHHHHHHhc-CCCCcEEEEec-Cc
Q 014834 192 ADNYEKIFSC-MKPNSILGLSH-GF 214 (417)
Q Consensus 192 ~~Vl~eI~~~-lk~gaiLi~a~-G~ 214 (417)
.++++++.++ ++++++|+++. |+
T Consensus 61 ~~v~~~l~~~~~~~~~ivi~~s~gi 85 (308)
T PRK14619 61 RPVAEQVQALNLPPETIIVTATKGL 85 (308)
T ss_pred HHHHHHHHHhcCCCCcEEEEeCCcc
Confidence 8999888774 78888776544 44
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.4e-09 Score=102.13 Aligned_cols=153 Identities=16% Similarity=0.195 Sum_probs=109.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHH----------HHHHcCceecC---------CCcCC
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA----------EARAAGFTEEN---------GTLGD 171 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~----------~A~~~G~~~~~---------~~~~s 171 (417)
|+||||||+|.||..||..+... |++|+++++..+...+ .+.+.|..... ....+
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~------G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~ 78 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARA------GVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTD 78 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhC------CCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCC
Confidence 57999999999999999999999 9999988876443211 13333422000 01345
Q ss_pred HHhhcCcCCEEEEccCCchHH--HHHHHHHhcC-CCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHH
Q 014834 172 IYETISGSDLVLLLISDAAQA--DNYEKIFSCM-KPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRL 247 (417)
Q Consensus 172 ~~Ea~~~ADIViLavpd~~~~--~Vl~eI~~~l-k~gaiLi-~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~l 247 (417)
. +.+++||+||-++|..... +++.++.... +++++|. -++++.+..+.. ....| -+++.+|+-.|.+.+
T Consensus 79 ~-~~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~-~~~~~--~r~~g~hf~~P~~~~--- 151 (286)
T PRK07819 79 L-GDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAA-ATKRP--GRVLGLHFFNPVPVL--- 151 (286)
T ss_pred H-HHhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh-hcCCC--ccEEEEecCCCcccC---
Confidence 6 5689999999999988764 5777888877 8899876 566666665554 22323 368999998887772
Q ss_pred HhhcccccCCCceEEEeecCCCCHHHHHHHHHHHH-HhCCC
Q 014834 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSV-ALGSP 287 (417)
Q Consensus 248 y~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~-alG~~ 287 (417)
+..- +.+....+.+..+.+..++. .+|..
T Consensus 152 ----------~lvE-lv~~~~T~~~~~~~~~~~~~~~lgk~ 181 (286)
T PRK07819 152 ----------PLVE-LVPTLVTSEATVARAEEFASDVLGKQ 181 (286)
T ss_pred ----------ceEE-EeCCCCCCHHHHHHHHHHHHHhCCCC
Confidence 2333 45577788899999999988 59965
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.1e-10 Score=113.94 Aligned_cols=108 Identities=15% Similarity=0.131 Sum_probs=83.6
Q ss_pred hhcccccccc---cchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCc
Q 014834 93 IVRGGRDLFK---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL 169 (417)
Q Consensus 93 ~vr~g~~~f~---~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~ 169 (417)
.+++|+|... .....|.| ++|||||+|+||..+|+.|+.. |++|+++++.. ...+...+.|+.. .
T Consensus 179 ~~~~g~W~~~~~~~~~~~L~g-ktVGIVG~G~IG~~vA~~L~af------G~~V~~~d~~~-~~~~~~~~~g~~~----~ 246 (386)
T PLN03139 179 QVVSGEWNVAGIAYRAYDLEG-KTVGTVGAGRIGRLLLQRLKPF------NCNLLYHDRLK-MDPELEKETGAKF----E 246 (386)
T ss_pred HHHhCCCccccccCCCcCCCC-CEEEEEeecHHHHHHHHHHHHC------CCEEEEECCCC-cchhhHhhcCcee----c
Confidence 4577889742 12368999 9999999999999999999988 99998776643 2223344566653 4
Q ss_pred CCHHhhcCcCCEEEEccCCchHH-HHHH-HHHhcCCCCcEEEEec
Q 014834 170 GDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSH 212 (417)
Q Consensus 170 ~s~~Ea~~~ADIViLavpd~~~~-~Vl~-eI~~~lk~gaiLi~a~ 212 (417)
.+++|++++||+|++++|..... .++. +++..||+|++|+.++
T Consensus 247 ~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~a 291 (386)
T PLN03139 247 EDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNA 291 (386)
T ss_pred CCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECC
Confidence 58999999999999999977664 5775 6889999999988554
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.1e-08 Score=100.20 Aligned_cols=96 Identities=21% Similarity=0.266 Sum_probs=73.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecC-------CCcCCHHhhcCcCCEEEE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN-------GTLGDIYETISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~-------~~~~s~~Ea~~~ADIViL 184 (417)
+||+|||.|+||..+|..|.++ |++|.+..|+.+ ..+...+.|+...+ ..+.+..++ +.+|+||+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~------g~~V~~~~r~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vil 72 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQA------GHDVTLVARRGA-HLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVIL 72 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECChH-HHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEE
Confidence 4799999999999999999998 999988877543 34444455653200 113345555 89999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcE-EEEecCch
Q 014834 185 LISDAAQADNYEKIFSCMKPNSI-LGLSHGFL 215 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gai-Li~a~G~~ 215 (417)
++|+....++++.+.+++.++++ |....|+.
T Consensus 73 a~k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~ 104 (304)
T PRK06522 73 AVKAYQLPAALPSLAPLLGPDTPVLFLQNGVG 104 (304)
T ss_pred ecccccHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence 99999999999999999988764 55778886
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.9e-10 Score=99.91 Aligned_cols=95 Identities=23% Similarity=0.335 Sum_probs=70.2
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec----------CCCcCCHHhhcCcCCEE
Q 014834 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE----------NGTLGDIYETISGSDLV 182 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~----------~~~~~s~~Ea~~~ADIV 182 (417)
||+|||.|++|.++|.-|.+. |++|.++.|+.. ..+.-.+.+.... -....|+++++++||+|
T Consensus 1 KI~ViGaG~~G~AlA~~la~~------g~~V~l~~~~~~-~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~I 73 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN------GHEVTLWGRDEE-QIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADII 73 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC------TEEEEEETSCHH-HHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEE
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCEEEEEeccHH-HHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEE
Confidence 799999999999999999999 999998877643 3333332221100 00246789999999999
Q ss_pred EEccCCchHHHHHHHHHhcCCCCcEEE-EecCc
Q 014834 183 LLLISDAAQADNYEKIFSCMKPNSILG-LSHGF 214 (417)
Q Consensus 183 iLavpd~~~~~Vl~eI~~~lk~gaiLi-~a~G~ 214 (417)
++++|.+.+.+++++|.++++++++|+ .+.||
T Consensus 74 iiavPs~~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 74 IIAVPSQAHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp EE-S-GGGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred EecccHHHHHHHHHHHhhccCCCCEEEEecCCc
Confidence 999999999999999999999998766 55577
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.3e-08 Score=105.90 Aligned_cols=203 Identities=15% Similarity=0.085 Sum_probs=116.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhh---------------
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET--------------- 175 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea--------------- 175 (417)
++||+|||+|.||.++|.+|.+. |++|++++++..+ .+. ...|.... ....+++.
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~------G~~V~~~D~~~~~-v~~-l~~g~~~~--~e~~l~~~l~~~~~~g~l~~~~~ 72 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASR------QKQVIGVDINQHA-VDT-INRGEIHI--VEPDLDMVVKTAVEGGYLRATTT 72 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhC------CCEEEEEeCCHHH-HHH-HHCCCCCc--CCCCHHHHHHHHhhcCceeeecc
Confidence 58999999999999999999999 9999877765333 332 33343210 01112222
Q ss_pred cCcCCEEEEccCCc----------hHHHHHHHHHhcCCCCcEEEEecCchhh---h----hhhcccC--CC----CCcc-
Q 014834 176 ISGSDLVLLLISDA----------AQADNYEKIFSCMKPNSILGLSHGFLLG---H----LQSIGLD--FP----KNIG- 231 (417)
Q Consensus 176 ~~~ADIViLavpd~----------~~~~Vl~eI~~~lk~gaiLi~a~G~~i~---~----~~~~~i~--~~----~dv~- 231 (417)
+++||+||+|+|+. .+.++++.|.+++++|++|++.+.+... . +.+.... .| .+.+
T Consensus 73 ~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f 152 (415)
T PRK11064 73 PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADI 152 (415)
T ss_pred cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCe
Confidence 34899999999973 5567778899999999999877655321 1 1111111 11 0112
Q ss_pred EEEecc--CCCchhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhh
Q 014834 232 VIAVCP--KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGIL 309 (417)
Q Consensus 232 VI~v~P--ntpg~~vr~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L 309 (417)
.+...| -.+|..+.+... .+-++. . .+.+..+.+..++..++....+.++. ..-+.-.+-+.+ +
T Consensus 153 ~v~~~PE~~~~G~~~~~~~~---------~~~vvg--G-~~~~~~~~~~~ly~~~~~~~~~~~~~-~~Ae~~Kl~~N~-~ 218 (415)
T PRK11064 153 NIAYCPERVLPGQVMVELIK---------NDRVIG--G-MTPVCSARASELYKIFLEGECVVTNS-RTAEMCKLTENS-F 218 (415)
T ss_pred EEEECCCccCCCChhhhhcC---------CCEEEE--e-CCHHHHHHHHHHHHHhcCCCeeeCCH-HHHHHHHHHHHH-H
Confidence 244666 445555432221 233332 2 35688999999999998642222221 111111111111 1
Q ss_pred hchHHHHHHHHHHHHHHcCCCHHHHHHH
Q 014834 310 LGAVHGIVESLFRRFTENGMSEDLAYKN 337 (417)
Q Consensus 310 ~G~~pA~iea~~d~~v~~Gl~~e~A~~~ 337 (417)
...--+++.-++..+.+.|++.++..+.
T Consensus 219 ~a~~ia~~nE~~~lae~~GiD~~~v~~~ 246 (415)
T PRK11064 219 RDVNIAFANELSLICADQGINVWELIRL 246 (415)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 2222234555666677888888777653
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.4e-09 Score=110.01 Aligned_cols=105 Identities=16% Similarity=0.242 Sum_probs=77.8
Q ss_pred hcccccccc--cchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCC
Q 014834 94 VRGGRDLFK--LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (417)
Q Consensus 94 vr~g~~~f~--~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s 171 (417)
+++|+|.+. .....|.| ++|||||+|+||.++|+.|+.. |++|+++++....... .... ..+
T Consensus 128 ~~~~~~~w~~~~~~~~l~g-~~VgIIG~G~IG~~vA~~L~~~------G~~V~~~d~~~~~~~~-----~~~~----~~~ 191 (330)
T PRK12480 128 VQAHDFTWQAEIMSKPVKN-MTVAIIGTGRIGAATAKIYAGF------GATITAYDAYPNKDLD-----FLTY----KDS 191 (330)
T ss_pred HHhCCcccccccCccccCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEeCChhHhhh-----hhhc----cCC
Confidence 455654332 23478999 9999999999999999999988 9999877765332111 1111 357
Q ss_pred HHhhcCcCCEEEEccCCchH-HHHH-HHHHhcCCCCcEEE-EecCc
Q 014834 172 IYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILG-LSHGF 214 (417)
Q Consensus 172 ~~Ea~~~ADIViLavpd~~~-~~Vl-~eI~~~lk~gaiLi-~a~G~ 214 (417)
+++++++||+|++++|.... ..++ +++++.|++|++|+ .+-|-
T Consensus 192 l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~ 237 (330)
T PRK12480 192 VKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGA 237 (330)
T ss_pred HHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCcc
Confidence 89999999999999998775 3444 46889999999887 45564
|
|
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.8e-08 Score=100.63 Aligned_cols=97 Identities=22% Similarity=0.280 Sum_probs=71.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHc--Cce------ecCC--CcCCHHhhc-CcCC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFT------EENG--TLGDIYETI-SGSD 180 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~--G~~------~~~~--~~~s~~Ea~-~~AD 180 (417)
+||+|||.|+||.++|..|.++ |++|.++.|+... .+.-.+. +.. ..+. ...+..+++ ..+|
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~------g~~V~l~~r~~~~-~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~D 73 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSK------KISVNLWGRNHTT-FESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNAT 73 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHC------CCeEEEEecCHHH-HHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCC
Confidence 4799999999999999999999 9999888775332 2222221 111 0000 124566665 5899
Q ss_pred EEEEccCCchHHHHHHHHHh-cCCCCc-EEEEecCch
Q 014834 181 LVLLLISDAAQADNYEKIFS-CMKPNS-ILGLSHGFL 215 (417)
Q Consensus 181 IViLavpd~~~~~Vl~eI~~-~lk~ga-iLi~a~G~~ 215 (417)
+||++||+....++++++.+ ++++++ +|++..|+.
T Consensus 74 liiiavks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~ 110 (326)
T PRK14620 74 CIILAVPTQQLRTICQQLQDCHLKKNTPILICSKGIE 110 (326)
T ss_pred EEEEEeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCee
Confidence 99999999999999999998 888776 566888883
|
|
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.9e-10 Score=111.62 Aligned_cols=150 Identities=23% Similarity=0.233 Sum_probs=104.2
Q ss_pred hccccccccc-chhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCH
Q 014834 94 VRGGRDLFKL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172 (417)
Q Consensus 94 vr~g~~~f~~-~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~ 172 (417)
.|+|.|.... ...+|.| ||+||||+|++|..+|+.|+.. |++|+.+++..++ +.+...+... ..++
T Consensus 125 ~~~g~W~~~~~~g~el~g-kTvGIiG~G~IG~~va~~l~af------gm~v~~~d~~~~~--~~~~~~~~~~----~~~L 191 (324)
T COG0111 125 QRRGEWDRKAFRGTELAG-KTVGIIGLGRIGRAVAKRLKAF------GMKVIGYDPYSPR--ERAGVDGVVG----VDSL 191 (324)
T ss_pred HHcCCccccccccccccC-CEEEEECCCHHHHHHHHHHHhC------CCeEEEECCCCch--hhhcccccee----cccH
Confidence 4889998722 2358999 9999999999999999999988 9999877664333 2344455553 5689
Q ss_pred HhhcCcCCEEEEccCCchH-HHHHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCccEEEeccCCCchh
Q 014834 173 YETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIGVIAVCPKGMGPS 243 (417)
Q Consensus 173 ~Ea~~~ADIViLavpd~~~-~~Vl~-eI~~~lk~gaiLi~a~-G~~------i~~~~~~~i~~~~dv~VI~v~Pntpg~~ 243 (417)
++++++||+|++++|-... ..++. +.+..||+|++++-++ |-. +..+++ +-.-..-+||.-..|..+.+.
T Consensus 192 d~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~-G~i~gA~lDVf~~EPl~~~~p 270 (324)
T COG0111 192 DELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDS-GKIAGAALDVFEEEPLPADSP 270 (324)
T ss_pred HHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHc-CCcceEEecCCCCCCCCCCCh
Confidence 9999999999999997665 45675 5788899999888554 431 223332 212223567777777666533
Q ss_pred HHHHHhhcccccCCCceEEEeecCC
Q 014834 244 VRRLYVQGKEINGAGINSSFAVHQD 268 (417)
Q Consensus 244 vr~ly~~G~~~~G~Gv~~liav~~d 268 (417)
+|.. -+.+++||--
T Consensus 271 ---L~~~--------pnV~~TPHia 284 (324)
T COG0111 271 ---LWDL--------PNVILTPHIG 284 (324)
T ss_pred ---hhcC--------CCeEECCccc
Confidence 3332 2455677763
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.4e-09 Score=109.96 Aligned_cols=106 Identities=20% Similarity=0.186 Sum_probs=76.8
Q ss_pred hccccccccc--chhhccCCCEEEEEcccchHHHHHHHH-HhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcC
Q 014834 94 VRGGRDLFKL--LPDAFNGINQIGVIGWGSQGPAQAQNL-RDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170 (417)
Q Consensus 94 vr~g~~~f~~--~~~~l~gmkkIgIIG~G~mG~AiA~~L-r~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~ 170 (417)
+|+|+|.+.. ....|.| ++|||||+|+||.++|+.| +.. |++|+++++..... ...++.. ..
T Consensus 128 ~~~~~~~~~~~~~~~~l~g-~~VgIIG~G~IG~~vA~~L~~~~------g~~V~~~d~~~~~~----~~~~~~~----~~ 192 (332)
T PRK08605 128 VREHDFRWEPPILSRSIKD-LKVAVIGTGRIGLAVAKIFAKGY------GSDVVAYDPFPNAK----AATYVDY----KD 192 (332)
T ss_pred HHhCCcccccccccceeCC-CEEEEECCCHHHHHHHHHHHhcC------CCEEEEECCCccHh----HHhhccc----cC
Confidence 4566664332 2368999 9999999999999999999 445 88887665543221 1123332 35
Q ss_pred CHHhhcCcCCEEEEccCCchHHHHH--HHHHhcCCCCcEEEEe-cCc
Q 014834 171 DIYETISGSDLVLLLISDAAQADNY--EKIFSCMKPNSILGLS-HGF 214 (417)
Q Consensus 171 s~~Ea~~~ADIViLavpd~~~~~Vl--~eI~~~lk~gaiLi~a-~G~ 214 (417)
++++++++||+|++++|.......+ .+..+.||+|++|+.+ -|.
T Consensus 193 ~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~ 239 (332)
T PRK08605 193 TIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGS 239 (332)
T ss_pred CHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCc
Confidence 8999999999999999988776544 3578899999988844 454
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.5e-09 Score=108.64 Aligned_cols=102 Identities=14% Similarity=0.167 Sum_probs=79.5
Q ss_pred hhcccccccccchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCH
Q 014834 93 IVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172 (417)
Q Consensus 93 ~vr~g~~~f~~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~ 172 (417)
-+|+|+|..... ..|.| ++|||||+|+||.++|+.|+.. |++|+++++.... .|+.. ...++
T Consensus 106 ~~~~g~w~~~~~-~~L~g-ktvgIiG~G~IG~~vA~~l~af------G~~V~~~~r~~~~-------~~~~~---~~~~l 167 (303)
T PRK06436 106 NMKNGNFKQSPT-KLLYN-KSLGILGYGGIGRRVALLAKAF------GMNIYAYTRSYVN-------DGISS---IYMEP 167 (303)
T ss_pred HHHcCCCCCCCC-CCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCCcc-------cCccc---ccCCH
Confidence 457788986544 78999 9999999999999999988877 9999877764211 23321 13579
Q ss_pred HhhcCcCCEEEEccCCchHH-HHHH-HHHhcCCCCcEEEEec
Q 014834 173 YETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSH 212 (417)
Q Consensus 173 ~Ea~~~ADIViLavpd~~~~-~Vl~-eI~~~lk~gaiLi~a~ 212 (417)
+|++++||+|++++|..... .++. +.+..||+|++++.++
T Consensus 168 ~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~s 209 (303)
T PRK06436 168 EDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVA 209 (303)
T ss_pred HHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECC
Confidence 99999999999999987764 4665 5888899999988443
|
|
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.3e-09 Score=108.23 Aligned_cols=149 Identities=19% Similarity=0.175 Sum_probs=102.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~~ 191 (417)
++|||||+|+||.+|+.||.+. |+.|+|++|..++ .+..++.|..+ ..++.|++++||+||.++|+..+
T Consensus 36 ~~iGFIGLG~MG~~M~~nLik~------G~kVtV~dr~~~k-~~~f~~~Ga~v----~~sPaeVae~sDvvitmv~~~~~ 104 (327)
T KOG0409|consen 36 TRIGFIGLGNMGSAMVSNLIKA------GYKVTVYDRTKDK-CKEFQEAGARV----ANSPAEVAEDSDVVITMVPNPKD 104 (327)
T ss_pred ceeeEEeeccchHHHHHHHHHc------CCEEEEEeCcHHH-HHHHHHhchhh----hCCHHHHHhhcCEEEEEcCChHh
Confidence 7999999999999999999999 9999999987555 45556678876 67899999999999999998877
Q ss_pred H-HHHH---HHHhcCCCCcEE-EEecCchhh---hhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEE
Q 014834 192 A-DNYE---KIFSCMKPNSIL-GLSHGFLLG---HLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (417)
Q Consensus 192 ~-~Vl~---eI~~~lk~gaiL-i~a~G~~i~---~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~li 263 (417)
+ +++. .+...+++|... ++++-+... .+.+ .+. .++..+| =+| ..--+..-+ .|.-.++
T Consensus 105 v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~-~i~-~~~~~~v-DAP---VSGg~~~A~-------~G~Ltim 171 (327)
T KOG0409|consen 105 VKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAK-AIS-NKGGRFV-DAP---VSGGVKGAE-------EGTLTIM 171 (327)
T ss_pred hHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHH-HHH-hCCCeEE-ecc---ccCCchhhh-------cCeEEEE
Confidence 5 6775 367777888866 677765321 2222 111 2333444 223 221111112 3444434
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCC
Q 014834 264 AVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 264 av~~dvsgea~e~a~~L~~alG~~ 287 (417)
+ .. ++...+.+..++..+|..
T Consensus 172 a-gG--de~~~~~~~~~~~~mGk~ 192 (327)
T KOG0409|consen 172 A-GG--DEALFEAASPVFKLMGKN 192 (327)
T ss_pred e-cC--cHHHHHHHHHHHHHhcce
Confidence 4 32 456777788889999864
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.8e-09 Score=108.99 Aligned_cols=135 Identities=25% Similarity=0.272 Sum_probs=96.3
Q ss_pred chhhhcccccccc-----cchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCcee
Q 014834 90 DEFIVRGGRDLFK-----LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (417)
Q Consensus 90 ~e~~vr~g~~~f~-----~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~ 164 (417)
-+.-+|.|.|... .....+.| ||+||||+|.+|.++|+.++.. |++|.+++++.. .+...+.++.
T Consensus 121 ~~~~~r~g~w~~~~~~~~~~~~~l~g-ktvGIiG~GrIG~avA~r~~~F------gm~v~y~~~~~~--~~~~~~~~~~- 190 (324)
T COG1052 121 GDRRVREGNWSLSGGPDPLLGFDLRG-KTLGIIGLGRIGQAVARRLKGF------GMKVLYYDRSPN--PEAEKELGAR- 190 (324)
T ss_pred HHHHHhcCcccccCCcccccccCCCC-CEEEEECCCHHHHHHHHHHhcC------CCEEEEECCCCC--hHHHhhcCce-
Confidence 3456788888775 33468999 9999999999999999999966 999987777643 2333344455
Q ss_pred cCCCcCCHHhhcCcCCEEEEccCCchHH-HHHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCccEEEe
Q 014834 165 ENGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIGVIAV 235 (417)
Q Consensus 165 ~~~~~~s~~Ea~~~ADIViLavpd~~~~-~Vl~-eI~~~lk~gaiLi~a~-G~~------i~~~~~~~i~~~~dv~VI~v 235 (417)
..+++|++++||+|+|.+|..... .++. +.+..||+|.+|+-.+ |-. +.-+++ +..-....||.--
T Consensus 191 ----y~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~-g~i~gaglDV~e~ 265 (324)
T COG1052 191 ----YVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKS-GKIAGAGLDVFEN 265 (324)
T ss_pred ----eccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHh-CCcceEEeeecCC
Confidence 346999999999999999988775 5665 6888999999988443 432 222222 2222335677766
Q ss_pred ccCC
Q 014834 236 CPKG 239 (417)
Q Consensus 236 ~Pnt 239 (417)
.|.-
T Consensus 266 Ep~~ 269 (324)
T COG1052 266 EPAL 269 (324)
T ss_pred CCCC
Confidence 6653
|
|
| >PF14748 P5CR_dimer: Pyrroline-5-carboxylate reductase dimerisation; PDB: 2RCY_D 3TRI_A 2IZZ_B 2GR9_B 2GRA_B 2GER_C 1YQG_A 2AG8_A 3GT0_A 2AMF_E | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.6e-09 Score=92.76 Aligned_cols=69 Identities=16% Similarity=0.211 Sum_probs=60.3
Q ss_pred hhhhccccchhhhchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcH--HHHHhcccCchh
Q 014834 298 YKSDIFGERGILLGAVHG----IVESLFRRFTENGMSEDLAYKNTVECITGIISKIISTQGM--LAVYNSFSGEDK 367 (417)
Q Consensus 298 ~~~dl~ge~t~L~G~~pA----~iea~~d~~v~~Gl~~e~A~~~~~q~~~~g~~~li~e~G~--~~l~~~vss~~~ 367 (417)
++|+.|+..++++||+|| +++++.+.+++.|+++++|.+++.|++. |.++|+.+++. ..|++.|++|.-
T Consensus 1 V~E~~~d~~talsGsgpA~~~~~~eal~~a~v~~Gl~~~~A~~lv~~t~~-G~a~ll~~~~~~~~~l~~~v~tPgG 75 (107)
T PF14748_consen 1 VDEDQFDAATALSGSGPAYFFLFIEALADAAVAQGLPREEARKLVAQTFI-GAAKLLEESGRSPAELRDEVTTPGG 75 (107)
T ss_dssp -SGGGHHHHHHHCTTHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH-HHHHHHHHCSS-HHHHHHHHS-TTS
T ss_pred CCHHHHhHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHccCCCHHHHhhhccCCCC
Confidence 357789999999999999 4899999999999999999999999999 99999999886 999999999953
|
... |
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.5e-09 Score=107.92 Aligned_cols=109 Identities=17% Similarity=0.248 Sum_probs=81.9
Q ss_pred hhhhccccccccc----chhhccCCCEEEEEcccchHHHHHHHHH-hhhhhhcCCcEEEEEecCChhhHHHHHHcCceec
Q 014834 91 EFIVRGGRDLFKL----LPDAFNGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (417)
Q Consensus 91 e~~vr~g~~~f~~----~~~~l~gmkkIgIIG~G~mG~AiA~~Lr-~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~ 165 (417)
...+|+|+|.... ....|.| |+|||||+|++|..+|+.++ .. |++|+++++... .+.....|..
T Consensus 122 ~~~~~~g~w~~~~~~~~~g~~L~g-ktvGIiG~G~IG~~va~~l~~~f------gm~V~~~~~~~~--~~~~~~~~~~-- 190 (323)
T PRK15409 122 AERVKAGEWTASIGPDWFGTDVHH-KTLGIVGMGRIGMALAQRAHFGF------NMPILYNARRHH--KEAEERFNAR-- 190 (323)
T ss_pred HHHHHcCCCcccCccccccCCCCC-CEEEEEcccHHHHHHHHHHHhcC------CCEEEEECCCCc--hhhHHhcCcE--
Confidence 3456788996431 1368999 99999999999999999987 55 889876655422 2223345655
Q ss_pred CCCcCCHHhhcCcCCEEEEccCCchHH-HHHH-HHHhcCCCCcEEE-EecC
Q 014834 166 NGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILG-LSHG 213 (417)
Q Consensus 166 ~~~~~s~~Ea~~~ADIViLavpd~~~~-~Vl~-eI~~~lk~gaiLi-~a~G 213 (417)
..+++|++++||+|++++|-.... .++. +.+..||||++++ .+=|
T Consensus 191 ---~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG 238 (323)
T PRK15409 191 ---YCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRG 238 (323)
T ss_pred ---ecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCc
Confidence 458999999999999999977664 5665 6888999999988 4445
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=2e-09 Score=108.02 Aligned_cols=105 Identities=12% Similarity=0.125 Sum_probs=79.1
Q ss_pred hhcccccccccchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCH
Q 014834 93 IVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172 (417)
Q Consensus 93 ~vr~g~~~f~~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~ 172 (417)
..++|+|..... ..+.| ++|||||+|+||..+|+.|+.. |++|+++++...+ . .++.. .....++
T Consensus 120 ~~~~~~w~~~~~-~~l~g-~tvgIvG~G~IG~~vA~~l~af------G~~V~~~~~~~~~-~-----~~~~~-~~~~~~l 184 (312)
T PRK15469 120 LQNSSHWQPLPE-YHRED-FTIGILGAGVLGSKVAQSLQTW------GFPLRCWSRSRKS-W-----PGVQS-FAGREEL 184 (312)
T ss_pred HHHhCCcCCCCC-CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCCCC-C-----CCcee-ecccccH
Confidence 356778975433 57899 9999999999999999999988 9999877664322 1 12221 0113578
Q ss_pred HhhcCcCCEEEEccCCchHH-HHHH-HHHhcCCCCcEEEEec
Q 014834 173 YETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSH 212 (417)
Q Consensus 173 ~Ea~~~ADIViLavpd~~~~-~Vl~-eI~~~lk~gaiLi~a~ 212 (417)
++++++||+|++++|..... .++. +.+..||+|++|+.++
T Consensus 185 ~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~a 226 (312)
T PRK15469 185 SAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLA 226 (312)
T ss_pred HHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECC
Confidence 99999999999999987764 5665 5888999999988554
|
|
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.1e-09 Score=114.88 Aligned_cols=107 Identities=19% Similarity=0.166 Sum_probs=83.3
Q ss_pred hhccccccccc-chhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCC
Q 014834 93 IVRGGRDLFKL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (417)
Q Consensus 93 ~vr~g~~~f~~-~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s 171 (417)
-+|+|+|.... ....|.| |+|||||+|+||.++|+.|+.. |++|+++++.. ..+.+.+.|+.. +.+
T Consensus 120 ~~~~g~W~~~~~~g~~l~g-ktvgIiG~G~IG~~vA~~l~~f------G~~V~~~d~~~--~~~~~~~~g~~~----~~~ 186 (525)
T TIGR01327 120 SLKEGEWDRKAFMGTELYG-KTLGVIGLGRIGSIVAKRAKAF------GMKVLAYDPYI--SPERAEQLGVEL----VDD 186 (525)
T ss_pred HHHcCCccccccCccccCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCCC--ChhHHHhcCCEE----cCC
Confidence 46778897432 1368999 9999999999999999999988 99988776542 234455667653 357
Q ss_pred HHhhcCcCCEEEEccCCchH-HHHHH-HHHhcCCCCcEEEEec
Q 014834 172 IYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH 212 (417)
Q Consensus 172 ~~Ea~~~ADIViLavpd~~~-~~Vl~-eI~~~lk~gaiLi~a~ 212 (417)
++|++++||+|++++|.... ..++. +.+..||+|++|+.++
T Consensus 187 l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~a 229 (525)
T TIGR01327 187 LDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCA 229 (525)
T ss_pred HHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcC
Confidence 99999999999999997765 45664 6788999999988554
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.7e-08 Score=96.11 Aligned_cols=225 Identities=14% Similarity=0.235 Sum_probs=154.7
Q ss_pred CCEEEEEcccch--------------------HHHHHHHHHhhhhhhcCCcEEEEEecC----ChhhHHHHHHcCceecC
Q 014834 111 INQIGVIGWGSQ--------------------GPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEARAAGFTEEN 166 (417)
Q Consensus 111 mkkIgIIG~G~m--------------------G~AiA~~Lr~s~~~~~~G~~ViVg~r~----~s~s~~~A~~~G~~~~~ 166 (417)
|+||+|.|+||| |..||-.+... |++|++...+ +...|++-++.|+..
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeA------GHDVVLaePn~d~~dd~~w~~vedAGV~v-- 72 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEA------GHDVVLAEPNRDIMDDEHWKRVEDAGVEV-- 72 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHc------CCcEEeecCCccccCHHHHHHHHhcCcEE--
Confidence 478999999987 55677766666 9999887543 335689999999987
Q ss_pred CCcCCHHhhcCcCCEEEEccCCc-hHHHHHHHHHhcCCCCcEEEEec---CchhhhhhhcccCC-CCCccEEEeccCC-C
Q 014834 167 GTLGDIYETISGSDLVLLLISDA-AQADNYEKIFSCMKPNSILGLSH---GFLLGHLQSIGLDF-PKNIGVIAVCPKG-M 240 (417)
Q Consensus 167 ~~~~s~~Ea~~~ADIViLavpd~-~~~~Vl~eI~~~lk~gaiLi~a~---G~~i~~~~~~~i~~-~~dv~VI~v~Pnt-p 240 (417)
+.|-.++++.+++.+|-||-. ..-.+.++|.+++..|++|.-.+ -+.+.+--+..+.. ++|+.|...||-+ |
T Consensus 73 --v~dD~eaa~~~Ei~VLFTPFGk~T~~Iarei~~hvpEgAVicnTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvP 150 (340)
T COG4007 73 --VSDDAEAAEHGEIHVLFTPFGKATFGIAREILEHVPEGAVICNTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVP 150 (340)
T ss_pred --ecCchhhhhcceEEEEecccchhhHHHHHHHHhhCcCCcEecccccCchhHHHHHhhhhhcCchhhcCccccCCCCCC
Confidence 677789999999999999977 55689999999999999987433 33332222223343 3788888889854 6
Q ss_pred chhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC-ceeccchhhhhhhhccccchhhhchHHH--HH
Q 014834 241 GPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP-FTFATTLEQEYKSDIFGERGILLGAVHG--IV 317 (417)
Q Consensus 241 g~~vr~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~-~~iettf~~e~~~dl~ge~t~L~G~~pA--~i 317 (417)
|+.....|.-+ |++-.. -.-+|+++.+++..|+++.|.. +++. -|+....+ =+|++.. .+
T Consensus 151 Gtp~h~~yvia----gr~t~g----~elATeEQi~r~velaes~Gk~~yv~p--------adv~s~Va-Dmg~lvtav~l 213 (340)
T COG4007 151 GTPQHGHYVIA----GRSTEG----KELATEEQIERCVELAESTGKEVYVLP--------ADVVSAVA-DMGVLVTAVAL 213 (340)
T ss_pred CCCCCceEEEe----ccCCCc----eeeccHHHHHHHHHHHHhcCCceEecC--------HHHHHHhh-hhHHHHHHHHH
Confidence 66654455544 222221 1235789999999999999975 2222 22332222 2333322 23
Q ss_pred HHHHHHH----HHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhccc
Q 014834 318 ESLFRRF----TENGMSEDLAYKNTVECITGIISKIISTQGMLAVYNSFS 363 (417)
Q Consensus 318 ea~~d~~----v~~Gl~~e~A~~~~~q~~~~g~~~li~e~G~~~l~~~vs 363 (417)
.+..|.+ .-.|-|.|+--+.+..++. .++-++-.+|++.|.....
T Consensus 214 ~gvldyy~Vg~qIi~AP~eMIekQilmtLq-TmAsLvetsGi~g~~~~~n 262 (340)
T COG4007 214 SGVLDYYYVGTQIIGAPKEMIEKQILMTLQ-TMASLVETSGIDGMLKALN 262 (340)
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHH-HHHHHHHhcchhHHHHhcC
Confidence 3333332 3579999998888887777 9999999999988776544
|
|
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.7e-08 Score=98.91 Aligned_cols=244 Identities=14% Similarity=0.152 Sum_probs=133.1
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCC--------cEEEEEecCC----hhhHHHHHH--------cCceecCC--CcC
Q 014834 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSD--------IVVKVGLRKG----SRSFAEARA--------AGFTEENG--TLG 170 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G--------~~ViVg~r~~----s~s~~~A~~--------~G~~~~~~--~~~ 170 (417)
||+|||.|++|.++|..|.++ | ++|.++.|.. +...+.-.+ -|+...+. .+.
T Consensus 1 kI~VIGaG~wGtALA~~la~n------g~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~ 74 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAEN------ARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVP 74 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEEC
Confidence 699999999999999999988 7 8998887732 221111111 12211011 135
Q ss_pred CHHhhcCcCCEEEEccCCchHHHHHHHHHhcCCCCcE-EEEecCchhh---------hhhhcccCCCCCccEEEeccCCC
Q 014834 171 DIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSI-LGLSHGFLLG---------HLQSIGLDFPKNIGVIAVCPKGM 240 (417)
Q Consensus 171 s~~Ea~~~ADIViLavpd~~~~~Vl~eI~~~lk~gai-Li~a~G~~i~---------~~~~~~i~~~~dv~VI~v~Pntp 240 (417)
++++++++||+||+++|++.+.++++++.++++++++ |+.+.|+... .+++ .++.++ .+..-|+.+
T Consensus 75 dl~eal~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e---~l~~~~-~~lsGP~~A 150 (342)
T TIGR03376 75 DLVEAAKGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEE---ELGIPC-GVLSGANLA 150 (342)
T ss_pred CHHHHHhcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHH---HhCCCe-EEeeCcchH
Confidence 7889999999999999999999999999999998875 5588888543 1111 122222 234555554
Q ss_pred chhHHHHHhhcccccCCCceEEEeecC-CCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHHHHHH
Q 014834 241 GPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVES 319 (417)
Q Consensus 241 g~~vr~ly~~G~~~~G~Gv~~liav~~-dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA~iea 319 (417)
..+ . +|.++-+++.. +.+ ...+.++.+...+-.. .|+-....|..|.+ |||.+--++-.
T Consensus 151 ~Ev-----a-------~~~pt~~~ia~~~~~-~~~~~a~~~~~lf~~~-----~frv~~s~Dv~GvE--l~galKNv~AI 210 (342)
T TIGR03376 151 NEV-----A-------KEKFSETTVGYRDPA-DFDVDARVLKALFHRP-----YFRVNVVDDVAGVE--IAGALKNVVAI 210 (342)
T ss_pred HHH-----H-------cCCCceEEEEeCCCc-chHHHHHHHHHHhCCC-----CEEEEEcCCcccch--hhHHHHHHHHH
Confidence 444 2 34544333332 211 1133344455555444 33334556777776 67766554322
Q ss_pred HHHHH--HHcCCCHHHH-HHHHHHHHHHHHHHHHH----------HhcHHHHHhcccCchhhhhhhhhhccChhHHHHHH
Q 014834 320 LFRRF--TENGMSEDLA-YKNTVECITGIISKIIS----------TQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILY 386 (417)
Q Consensus 320 ~~d~~--v~~Gl~~e~A-~~~~~q~~~~g~~~li~----------e~G~~~l~~~vss~~~~~~~~~~~~~~~~~~~~m~ 386 (417)
+.=.. ...|..-.-| +...+.+|. -+++.+. -.|++.|.--|++-....||..+........++++
T Consensus 211 a~Gi~~Gl~~g~N~~aalitrgl~Em~-~l~~~~g~~~~~~T~~gl~G~GDL~~Tc~ssRN~~~G~~l~~~g~~~~~~~~ 289 (342)
T TIGR03376 211 AAGFVDGLGWGDNAKAAVMRRGLLEMI-KFARMFFPTGEVTFTFESCGVADLITTCLGGRNFKVGRAFAKTGKSLEELEK 289 (342)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHH-HHHHHhCCCCCCCcccccchhhhhhheeecCccHHHHHHHHhcCCCHHHHHH
Confidence 22111 2223222111 222334444 3333321 23446666666652335677765431233333444
Q ss_pred H
Q 014834 387 E 387 (417)
Q Consensus 387 ~ 387 (417)
+
T Consensus 290 ~ 290 (342)
T TIGR03376 290 E 290 (342)
T ss_pred h
Confidence 3
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=98.93 E-value=3e-09 Score=108.28 Aligned_cols=162 Identities=22% Similarity=0.199 Sum_probs=101.3
Q ss_pred hhcccccccccchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcC--------cee
Q 014834 93 IVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG--------FTE 164 (417)
Q Consensus 93 ~vr~g~~~f~~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G--------~~~ 164 (417)
.+++|+|....+ ..|.| |+|||||+|+||..+|+.|+.. |++|+++++...+... ...+ +..
T Consensus 143 ~~~~~~w~~~~~-~~l~g-ktvGIiG~G~IG~~vA~~l~af------G~~V~~~dr~~~~~~~--~~~~~~~~~~~~~~~ 212 (347)
T PLN02928 143 SLKARRLGEPIG-DTLFG-KTVFILGYGAIGIELAKRLRPF------GVKLLATRRSWTSEPE--DGLLIPNGDVDDLVD 212 (347)
T ss_pred HHHcCCcccccc-cCCCC-CEEEEECCCHHHHHHHHHHhhC------CCEEEEECCCCChhhh--hhhcccccccccccc
Confidence 456788865444 68999 9999999999999999999988 9999877664222111 1000 000
Q ss_pred cCCCcCCHHhhcCcCCEEEEccCCchHH-HHHH-HHHhcCCCCcEEEEe-cCchh------hhhhhcccCCCCCccEEEe
Q 014834 165 ENGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLS-HGFLL------GHLQSIGLDFPKNIGVIAV 235 (417)
Q Consensus 165 ~~~~~~s~~Ea~~~ADIViLavpd~~~~-~Vl~-eI~~~lk~gaiLi~a-~G~~i------~~~~~~~i~~~~dv~VI~v 235 (417)
......+++|++++||+|++++|..... .++. +.+..||+|++|+.+ -|-.+ .-+++ +......+||...
T Consensus 213 ~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~-g~i~gAaLDV~~~ 291 (347)
T PLN02928 213 EKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALES-GHLGGLAIDVAWS 291 (347)
T ss_pred ccCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHc-CCeeEEEEccCCC
Confidence 0012458999999999999999976654 5665 688899999998844 45322 22222 1111224567666
Q ss_pred ccCCCchhHHHHHhhcccccCCCceEEEeecCC-CCHHHHHH
Q 014834 236 CPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNV 276 (417)
Q Consensus 236 ~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~d-vsgea~e~ 276 (417)
.|..+.+. ++.. -+.+++||-. .+.+..+.
T Consensus 292 EP~~~~~p---L~~~--------~nviiTPHia~~t~~~~~~ 322 (347)
T PLN02928 292 EPFDPDDP---ILKH--------PNVIITPHVAGVTEYSYRS 322 (347)
T ss_pred CCCCCCCh---hhcC--------CCEEECCcCCCChHHHHHH
Confidence 66433322 2221 3567888863 34444333
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.9e-08 Score=97.95 Aligned_cols=173 Identities=18% Similarity=0.254 Sum_probs=111.3
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH------c-CceecC--CCcCCHHhhcCcCCE
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA------A-GFTEEN--GTLGDIYETISGSDL 181 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~------~-G~~~~~--~~~~s~~Ea~~~ADI 181 (417)
++||+|||.|+.|.|+|+-|.++ |++|.++.|+.+-..+.-.. . |+...+ ..+.|+++++++||+
T Consensus 1 ~~kI~ViGaGswGTALA~~la~n------g~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~ 74 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARN------GHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADI 74 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhc------CCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCE
Confidence 47999999999999999999999 99999888763321111110 0 221101 125679999999999
Q ss_pred EEEccCCchHHHHHHHHHhcCCCCcEEE-EecCchh-------hhhhhcccCCCCCccEEEeccCCCchhHHHHHhhccc
Q 014834 182 VLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFLL-------GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKE 253 (417)
Q Consensus 182 ViLavpd~~~~~Vl~eI~~~lk~gaiLi-~a~G~~i-------~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~ 253 (417)
|++++|-+...++++++.++++++++++ .+-|+.. ..+++ .+|.+.-++..-||-...+
T Consensus 75 iv~avPs~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e---~l~~~~~~vLSGPs~A~EV---------- 141 (329)
T COG0240 75 IVIAVPSQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEE---ELPDNPIAVLSGPSFAKEV---------- 141 (329)
T ss_pred EEEECChHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHH---HcCCCeEEEEECccHHHHH----------
Confidence 9999999999999999999998888655 6667732 22332 3444434556666654444
Q ss_pred ccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHH
Q 014834 254 INGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHG 315 (417)
Q Consensus 254 ~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA 315 (417)
.+|.|+-+++.... .+..+ .+...+=++ .|+..+..|..|.+ ++|.+--
T Consensus 142 --a~g~pta~~vas~d-~~~a~---~v~~~f~~~-----~Frvy~~~Dv~Gve--igGAlKN 190 (329)
T COG0240 142 --AQGLPTAVVVASND-QEAAE---KVQALFSSP-----YFRVYTSTDVIGVE--IGGALKN 190 (329)
T ss_pred --hcCCCcEEEEecCC-HHHHH---HHHHHhCCC-----cEEEEecCchhhhH--HHHHHHH
Confidence 35687766665532 23333 344444444 33334556667665 5555544
|
|
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.9e-09 Score=113.83 Aligned_cols=106 Identities=18% Similarity=0.148 Sum_probs=83.5
Q ss_pred hhccccccccc-chhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCC
Q 014834 93 IVRGGRDLFKL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (417)
Q Consensus 93 ~vr~g~~~f~~-~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s 171 (417)
-+|+|+|.... ....|.| |+|||||+|+||..+|+.|+.. |++|+++++... .+.+.+.|+.. .+
T Consensus 122 ~~~~g~W~~~~~~g~~l~g-ktvgIiG~G~IG~~vA~~l~~f------G~~V~~~d~~~~--~~~~~~~g~~~-----~~ 187 (526)
T PRK13581 122 SLKAGKWERKKFMGVELYG-KTLGIIGLGRIGSEVAKRAKAF------GMKVIAYDPYIS--PERAAQLGVEL-----VS 187 (526)
T ss_pred HHHcCCCCccCccccccCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCCCC--hhHHHhcCCEE-----Ec
Confidence 45778896432 1367999 9999999999999999999988 999987766432 33455677763 48
Q ss_pred HHhhcCcCCEEEEccCCchH-HHHHH-HHHhcCCCCcEEEEec
Q 014834 172 IYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH 212 (417)
Q Consensus 172 ~~Ea~~~ADIViLavpd~~~-~~Vl~-eI~~~lk~gaiLi~a~ 212 (417)
++|++++||+|++++|.... ..++. +.+..||+|++|+.++
T Consensus 188 l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~a 230 (526)
T PRK13581 188 LDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCA 230 (526)
T ss_pred HHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECC
Confidence 99999999999999998765 45674 6889999999988554
|
|
| >KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.1e-08 Score=101.10 Aligned_cols=164 Identities=16% Similarity=0.106 Sum_probs=117.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhc-CcCCEEEEccCCch
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~-~~ADIViLavpd~~ 190 (417)
.+|||||+|+||.=+|.-|.+. |+.+++..|.+ -...++.+|..- ...+.+++ +..|+|++||.-..
T Consensus 53 l~IaIIGfGnmGqflAetli~a------Gh~li~hsRsd--yssaa~~yg~~~----ft~lhdlcerhpDvvLlctsils 120 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDA------GHGLICHSRSD--YSSAAEKYGSAK----FTLLHDLCERHPDVVLLCTSILS 120 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhc------CceeEecCcch--hHHHHHHhcccc----cccHHHHHhcCCCEEEEEehhhh
Confidence 7899999999999999999999 99988888865 345566666542 34455544 57999999999888
Q ss_pred HHHHHHHHHhc-CCCCcEEEEecCch---hhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeec
Q 014834 191 QADNYEKIFSC-MKPNSILGLSHGFL---LGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (417)
Q Consensus 191 ~~~Vl~eI~~~-lk~gaiLi~a~G~~---i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~ 266 (417)
+..++...-+. +|.|+++++.-.++ ..-+++ .+|+|+|++.+||.---..+. ..++|.+.++--+
T Consensus 121 iekilatypfqrlrrgtlfvdvlSvKefek~lfek---YLPkdfDIlctHpmfGPksvn--------h~wqglpfVydkv 189 (480)
T KOG2380|consen 121 IEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEK---YLPKDFDILCTHPMFGPKSVN--------HEWQGLPFVYDKV 189 (480)
T ss_pred HHHHHHhcCchhhccceeEeeeeecchhHHHHHHH---hCccccceEeecCCcCCCcCC--------CccccCceEEEEe
Confidence 88888766554 88999887655543 333444 889999999999953211111 1157888866544
Q ss_pred CCC----CHHHHHHHHHHHHHhCCCceeccchhhhhh
Q 014834 267 QDV----DGRATNVALGWSVALGSPFTFATTLEQEYK 299 (417)
Q Consensus 267 ~dv----sgea~e~a~~L~~alG~~~~iettf~~e~~ 299 (417)
.-- ..+.-|...+++.-.|+. .++.+.+++++
T Consensus 190 Rig~~~~r~ercE~fleIf~cegck-mVemS~eeHDk 225 (480)
T KOG2380|consen 190 RIGYAASRPERCEFFLEIFACEGCK-MVEMSYEEHDK 225 (480)
T ss_pred eccccccchHHHHHHHHHHHhcCCe-EEEEEeecccc
Confidence 321 257889999999999985 44445455544
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.1e-08 Score=94.30 Aligned_cols=96 Identities=19% Similarity=0.211 Sum_probs=74.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCC---------CcCCHHhhcCcCCEE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG---------TLGDIYETISGSDLV 182 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~---------~~~s~~Ea~~~ADIV 182 (417)
+||+|||.|.||..+|..|.++ |++|.+..| .+ ..+...+.|+..... .+.+.+++.+.+|+|
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~------g~~V~~~~r-~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 72 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEA------GRDVTFLVR-PK-RAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLV 72 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCceEEEec-HH-HHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEE
Confidence 5899999999999999999998 999988877 33 344445556542110 123556667899999
Q ss_pred EEccCCchHHHHHHHHHhcCCCCcEEE-EecCch
Q 014834 183 LLLISDAAQADNYEKIFSCMKPNSILG-LSHGFL 215 (417)
Q Consensus 183 iLavpd~~~~~Vl~eI~~~lk~gaiLi-~a~G~~ 215 (417)
|+++|..+..++++++.+++.++++|+ +..|+.
T Consensus 73 ilavk~~~~~~~~~~l~~~~~~~~~ii~~~nG~~ 106 (305)
T PRK12921 73 ILAVKAYQLDAAIPDLKPLVGEDTVIIPLQNGIG 106 (305)
T ss_pred EEEecccCHHHHHHHHHhhcCCCCEEEEeeCCCC
Confidence 999999999999999999998887654 667875
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.6e-08 Score=90.18 Aligned_cols=146 Identities=16% Similarity=0.214 Sum_probs=99.9
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHH-----------HcC-------------ceecCCC
Q 014834 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-----------AAG-------------FTEENGT 168 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~-----------~~G-------------~~~~~~~ 168 (417)
||+|||.|.||..+|..+... |++|.+++++.+. .+.++ +.| +..
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~------G~~V~l~d~~~~~-l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~---- 69 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA------GYEVTLYDRSPEA-LERARKRIERLLDRLVRKGRLSQEEADAALARISF---- 69 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT------TSEEEEE-SSHHH-HHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE----
T ss_pred CEEEEcCCHHHHHHHHHHHhC------CCcEEEEECChHH-HHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc----
Confidence 799999999999999999999 9999988876431 11111 111 121
Q ss_pred cCCHHhhcCcCCEEEEccCCchH--HHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHH
Q 014834 169 LGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVR 245 (417)
Q Consensus 169 ~~s~~Ea~~~ADIViLavpd~~~--~~Vl~eI~~~lk~gaiLi-~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr 245 (417)
..++++++ +||+||=++|.... .++|.++.+.+.++++|. -++++++..+.. ..+..-+++.+|+-.|.+.++
T Consensus 70 ~~dl~~~~-~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~---~~~~p~R~ig~Hf~~P~~~~~ 145 (180)
T PF02737_consen 70 TTDLEEAV-DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAA---ALSRPERFIGMHFFNPPHLMP 145 (180)
T ss_dssp ESSGGGGC-TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHT---TSSTGGGEEEEEE-SSTTT--
T ss_pred ccCHHHHh-hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHh---ccCcCceEEEEecccccccCc
Confidence 46788888 99999999997665 369999999999999875 778898887765 333444799999988876521
Q ss_pred HHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 246 ~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~ 287 (417)
+-= +.++...+.+..+.+.+++..+|..
T Consensus 146 -------------lVE-vv~~~~T~~~~~~~~~~~~~~~gk~ 173 (180)
T PF02737_consen 146 -------------LVE-VVPGPKTSPETVDRVRALLRSLGKT 173 (180)
T ss_dssp -------------EEE-EEE-TTS-HHHHHHHHHHHHHTT-E
T ss_pred -------------eEE-EeCCCCCCHHHHHHHHHHHHHCCCE
Confidence 222 4457778889999999999999864
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.5e-09 Score=105.40 Aligned_cols=158 Identities=16% Similarity=0.148 Sum_probs=102.1
Q ss_pred hhccccccccc-------chhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec
Q 014834 93 IVRGGRDLFKL-------LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (417)
Q Consensus 93 ~vr~g~~~f~~-------~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~ 165 (417)
.+|+|+|.... ....|.| |+|||||+|++|..+|+.++.. |++|+++++.... ...++.
T Consensus 121 ~~~~g~w~~~~~~~~~~~~~~~L~g-ktvGIiG~G~IG~~vA~~~~~f------gm~V~~~d~~~~~-----~~~~~~-- 186 (311)
T PRK08410 121 YVKSGEYSESPIFTHISRPLGEIKG-KKWGIIGLGTIGKRVAKIAQAF------GAKVVYYSTSGKN-----KNEEYE-- 186 (311)
T ss_pred HHHcCCCCcCCCccccCccccccCC-CEEEEECCCHHHHHHHHHHhhc------CCEEEEECCCccc-----cccCce--
Confidence 36788886431 1258999 9999999999999999999877 9998876654211 123454
Q ss_pred CCCcCCHHhhcCcCCEEEEccCCchHH-HHHH-HHHhcCCCCcEEE-EecCch------hhhhhhcccCCCCCccEEEec
Q 014834 166 NGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILG-LSHGFL------LGHLQSIGLDFPKNIGVIAVC 236 (417)
Q Consensus 166 ~~~~~s~~Ea~~~ADIViLavpd~~~~-~Vl~-eI~~~lk~gaiLi-~a~G~~------i~~~~~~~i~~~~dv~VI~v~ 236 (417)
..+++|++++||+|++++|-.... .++. +.+..||||++|+ .+-|-. +..+++ +-.. ..+||..-.
T Consensus 187 ---~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~-g~i~-AaLDV~~~E 261 (311)
T PRK08410 187 ---RVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDE-KDIY-AGLDVLEKE 261 (311)
T ss_pred ---eecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHc-CCeE-EEEecCCCC
Confidence 458999999999999999976654 5665 6888999999988 555632 223332 1111 345666666
Q ss_pred cCCCchhHHHHHhhcccccCCCceEEEeecCC-CCHHHHHHH
Q 014834 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVA 277 (417)
Q Consensus 237 Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~d-vsgea~e~a 277 (417)
|..+.+. ++.-- .=-|.+++||-. .+.++.+..
T Consensus 262 P~~~~~p---L~~~~-----~~~NvilTPH~a~~t~e~~~~~ 295 (311)
T PRK08410 262 PMEKNHP---LLSIK-----NKEKLLITPHIAWASKEARKTL 295 (311)
T ss_pred CCCCCCh---hhccC-----CCCCEEECCccccCCHHHHHHH
Confidence 6443332 12100 001577888853 344544443
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.2e-08 Score=98.18 Aligned_cols=97 Identities=28% Similarity=0.322 Sum_probs=73.8
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecC--C-----------CcCCHHhhcC
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN--G-----------TLGDIYETIS 177 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~--~-----------~~~s~~Ea~~ 177 (417)
|+||+|||+|.||.++|..|.++ |++|.+.+|. +..+...+.|+...+ + ...+. ++++
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~------G~~V~~~~r~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 72 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAA------GADVTLIGRA--RIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALA 72 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhc------CCcEEEEecH--HHHHHHHhcCceeecCCCcceecccceeEeccCh-hhcc
Confidence 47899999999999999999999 9999888774 223444555654211 0 01233 5678
Q ss_pred cCCEEEEccCCchHHHHHHHHHhcCCCCcEEE-EecCchh
Q 014834 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFLL 216 (417)
Q Consensus 178 ~ADIViLavpd~~~~~Vl~eI~~~lk~gaiLi-~a~G~~i 216 (417)
.+|+||+++|+....++++++.++++++++|+ ...|+..
T Consensus 73 ~~D~vil~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~~ 112 (341)
T PRK08229 73 TADLVLVTVKSAATADAAAALAGHARPGAVVVSFQNGVRN 112 (341)
T ss_pred CCCEEEEEecCcchHHHHHHHHhhCCCCCEEEEeCCCCCc
Confidence 99999999999988899999999999988765 5567753
|
|
| >KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.3e-08 Score=103.05 Aligned_cols=137 Identities=23% Similarity=0.261 Sum_probs=95.4
Q ss_pred hcccchhhhcccccccccc---hhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCc
Q 014834 86 LANRDEFIVRGGRDLFKLL---PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF 162 (417)
Q Consensus 86 ~~~~~e~~vr~g~~~f~~~---~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~ 162 (417)
|-+-+|. +++|+|.+..+ ...++| |+|||+|+|++|..+|++|... |..+.+..|. ....+.+.+.+.
T Consensus 136 ~~~g~~~-~~~g~w~~~~~~~~g~~~~g-K~vgilG~G~IG~~ia~rL~~F------g~~i~y~~r~-~~~~~~~~~~~~ 206 (336)
T KOG0069|consen 136 FSEGNEM-VRNGGWGWAGGWPLGYDLEG-KTVGILGLGRIGKAIAKRLKPF------GCVILYHSRT-QLPPEEAYEYYA 206 (336)
T ss_pred hhhhhhh-hhcCCccccCCccccccccC-CEEEEecCcHHHHHHHHhhhhc------cceeeeeccc-CCchhhHHHhcc
Confidence 5555554 45666733221 388999 9999999999999999999987 8545444454 344556666665
Q ss_pred eecCCCcCCHHhhcCcCCEEEEccCCchHH-HHHH-HHHhcCCCCcEEE-EecCchhh------hhhhcccCCCCCccEE
Q 014834 163 TEENGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILG-LSHGFLLG------HLQSIGLDFPKNIGVI 233 (417)
Q Consensus 163 ~~~~~~~~s~~Ea~~~ADIViLavpd~~~~-~Vl~-eI~~~lk~gaiLi-~a~G~~i~------~~~~~~i~~~~dv~VI 233 (417)
. ..+.+|.+.++|+|++++|..... .+++ ++..+||+|.+|+ .+=|--+. .+.+ +.......||.
T Consensus 207 ~-----~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~s-G~i~~aGlDVf 280 (336)
T KOG0069|consen 207 E-----FVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKS-GKIAGAGLDVF 280 (336)
T ss_pred c-----ccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhc-CCccccccccc
Confidence 4 358999999999999999988875 6776 6899999999887 44453221 1211 22233456777
Q ss_pred Eecc
Q 014834 234 AVCP 237 (417)
Q Consensus 234 ~v~P 237 (417)
--.|
T Consensus 281 ~~EP 284 (336)
T KOG0069|consen 281 EPEP 284 (336)
T ss_pred CCCC
Confidence 7667
|
|
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.4e-08 Score=102.11 Aligned_cols=103 Identities=21% Similarity=0.200 Sum_probs=78.3
Q ss_pred hhccccccccc-------chhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec
Q 014834 93 IVRGGRDLFKL-------LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (417)
Q Consensus 93 ~vr~g~~~f~~-------~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~ 165 (417)
-+|+|+|.... ....|.| |+|||||+|++|..+|+.++.. |++|+++++.... ..+.
T Consensus 124 ~~~~g~W~~~~~~~~~~~~~~~l~g-ktvgIiG~G~IG~~vA~~l~~f------gm~V~~~~~~~~~-------~~~~-- 187 (317)
T PRK06487 124 AVAAGRWQQSSQFCLLDFPIVELEG-KTLGLLGHGELGGAVARLAEAF------GMRVLIGQLPGRP-------ARPD-- 187 (317)
T ss_pred HHHcCCCccCcccccccCcccccCC-CEEEEECCCHHHHHHHHHHhhC------CCEEEEECCCCCc-------cccc--
Confidence 45788886432 1257999 9999999999999999999877 9998766654211 1122
Q ss_pred CCCcCCHHhhcCcCCEEEEccCCchHH-HHHH-HHHhcCCCCcEEE-EecCc
Q 014834 166 NGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILG-LSHGF 214 (417)
Q Consensus 166 ~~~~~s~~Ea~~~ADIViLavpd~~~~-~Vl~-eI~~~lk~gaiLi-~a~G~ 214 (417)
..+++|++++||+|++++|-.... .++. +.+..||+|++|+ .+-|-
T Consensus 188 ---~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~ 236 (317)
T PRK06487 188 ---RLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGG 236 (317)
T ss_pred ---ccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCcc
Confidence 347999999999999999976654 5665 6888999999988 44453
|
|
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.8e-08 Score=104.67 Aligned_cols=106 Identities=19% Similarity=0.214 Sum_probs=80.0
Q ss_pred hhccccccccc-chhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCC
Q 014834 93 IVRGGRDLFKL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (417)
Q Consensus 93 ~vr~g~~~f~~-~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s 171 (417)
-+|+|+|.... ....|.| |+|||||+|++|..+|+.++.. |++|+++++... ....++.. ..+
T Consensus 133 ~~~~g~w~~~~~~~~~L~g-ktvGIiG~G~IG~~vA~~~~~f------Gm~V~~~d~~~~-----~~~~~~~~----~~~ 196 (409)
T PRK11790 133 KAHRGGWNKSAAGSFEVRG-KTLGIVGYGHIGTQLSVLAESL------GMRVYFYDIEDK-----LPLGNARQ----VGS 196 (409)
T ss_pred HHHcCcccccccCcccCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCCcc-----cccCCcee----cCC
Confidence 35778897532 2378999 9999999999999999999987 999876665321 11123332 458
Q ss_pred HHhhcCcCCEEEEccCCchH-HHHHH-HHHhcCCCCcEEE-EecCc
Q 014834 172 IYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILG-LSHGF 214 (417)
Q Consensus 172 ~~Ea~~~ADIViLavpd~~~-~~Vl~-eI~~~lk~gaiLi-~a~G~ 214 (417)
++|++++||+|++++|.... ..++. +.+..||+|++|+ .+-|-
T Consensus 197 l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ 242 (409)
T PRK11790 197 LEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGT 242 (409)
T ss_pred HHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCc
Confidence 99999999999999997665 45665 5888999999988 44453
|
|
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.2e-08 Score=100.59 Aligned_cols=159 Identities=17% Similarity=0.129 Sum_probs=99.4
Q ss_pred hhccccccccc-------chhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec
Q 014834 93 IVRGGRDLFKL-------LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (417)
Q Consensus 93 ~vr~g~~~f~~-------~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~ 165 (417)
.+++|+|.... ....+.| |+|||||+|++|..+|+.++.. |++|+.+++.... .....
T Consensus 123 ~~~~~~W~~~~~~~~~~~~~~~l~g-ktvgIiG~G~IG~~va~~l~~f------g~~V~~~~~~~~~------~~~~~-- 187 (314)
T PRK06932 123 DQLSDRWATCKQFCYFDYPITDVRG-STLGVFGKGCLGTEVGRLAQAL------GMKVLYAEHKGAS------VCREG-- 187 (314)
T ss_pred HHHcCCCCcCccccccCCcccccCC-CEEEEECCCHHHHHHHHHHhcC------CCEEEEECCCccc------ccccc--
Confidence 35678886321 2258999 9999999999999999999877 9998765543211 11111
Q ss_pred CCCcCCHHhhcCcCCEEEEccCCchHH-HHHH-HHHhcCCCCcEEE-EecCchh------hhhhhcccCCCCCccEEEec
Q 014834 166 NGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILG-LSHGFLL------GHLQSIGLDFPKNIGVIAVC 236 (417)
Q Consensus 166 ~~~~~s~~Ea~~~ADIViLavpd~~~~-~Vl~-eI~~~lk~gaiLi-~a~G~~i------~~~~~~~i~~~~dv~VI~v~ 236 (417)
..+++|++++||+|++++|-.... .++. +.+..||+|++|+ .+-|-.+ ..+++ +......+||....
T Consensus 188 ---~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~-g~i~gAaLDV~~~E 263 (314)
T PRK06932 188 ---YTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALEN-GKIAGAALDVLVKE 263 (314)
T ss_pred ---cCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHc-CCccEEEEecCCCC
Confidence 347999999999999999976654 5665 6888999999988 5556422 22222 11112245676666
Q ss_pred cCCCchhHHHHHhhcccccCCCceEEEeecCC-CCHHHHHHH
Q 014834 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVA 277 (417)
Q Consensus 237 Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~d-vsgea~e~a 277 (417)
|..+.....+.+.+- -+.+++||-. .+.++.+..
T Consensus 264 P~~~~~pl~~~~~~~-------pnvilTPHia~~t~e~~~~~ 298 (314)
T PRK06932 264 PPEKDNPLIQAAKRL-------PNLLITPHIAWASDSAVTTL 298 (314)
T ss_pred CCCCCChhhHhhcCC-------CCEEECCccccCcHHHHHHH
Confidence 744333221111110 2566777753 344444443
|
|
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=8.3e-07 Score=83.95 Aligned_cols=126 Identities=16% Similarity=0.059 Sum_probs=92.4
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~ 190 (417)
+||+|||. |.||..++.-++++ |+.|. +++||+||||+|...
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~------g~~v~-------------------------------~~~~DlVilavPv~~ 43 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDN------GLGVY-------------------------------IKKADHAFLSVPIDA 43 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhC------CCEEE-------------------------------ECCCCEEEEeCCHHH
Confidence 48999998 99999999999999 98874 257999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeecCCCC
Q 014834 191 QADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (417)
Q Consensus 191 ~~~Vl~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~dvs 270 (417)
..++++++. .+|++.++++-...+ ...++|..||.. |+. .++. |-.-+++++ ....+
T Consensus 44 ~~~~i~~~~------~~v~Dv~SvK~~i~~-------~~~~~vg~HPMf-Gp~------~a~~--~lf~~~iv~-~~~~~ 100 (197)
T PRK06444 44 ALNYIESYD------NNFVEISSVKWPFKK-------YSGKIVSIHPLF-GPM------SYND--GVHRTVIFI-NDISR 100 (197)
T ss_pred HHHHHHHhC------CeEEeccccCHHHHH-------hcCCEEecCCCC-CCC------cCcc--cccceEEEE-CCCCC
Confidence 999998764 268899998753221 134799999954 432 1110 101244443 45556
Q ss_pred HHHHHHHHHHHHHhCCCceeccchhhhhhh
Q 014834 271 GRATNVALGWSVALGSPFTFATTLEQEYKS 300 (417)
Q Consensus 271 gea~e~a~~L~~alG~~~~iettf~~e~~~ 300 (417)
.++.+.+++++. | .++++++.++|++.
T Consensus 101 ~~~~~~~~~l~~--G-~~~~~~t~eeHD~~ 127 (197)
T PRK06444 101 DNYLNEINEMFR--G-YHFVEMTADEHDLL 127 (197)
T ss_pred HHHHHHHHHHHc--C-CEEEEeCHHHHHHH
Confidence 677888999988 6 47888888888774
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=98.73 E-value=7.1e-07 Score=98.87 Aligned_cols=155 Identities=10% Similarity=0.102 Sum_probs=111.9
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhh----------HHHHHHcCceecC-------C--Cc
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS----------FAEARAAGFTEEN-------G--TL 169 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s----------~~~A~~~G~~~~~-------~--~~ 169 (417)
..++||+|||.|.||..||..+..+ |++|++.+.+.+.. .+...+.|-.... . ..
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~------G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~ 384 (715)
T PRK11730 311 KPVKQAAVLGAGIMGGGIAYQSASK------GVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT 384 (715)
T ss_pred cccceEEEECCchhHHHHHHHHHhC------CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe
Confidence 4568999999999999999999999 99998887764321 1111222211000 0 02
Q ss_pred CCHHhhcCcCCEEEEccCCchHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHH
Q 014834 170 GDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRR 246 (417)
Q Consensus 170 ~s~~Ea~~~ADIViLavpd~~~~--~Vl~eI~~~lk~gaiLi-~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ 246 (417)
.++ +.+++||+||=++|..... +++.++.++++++++|. -++++.+..+.+ .....-+++..|+=.|.+.++
T Consensus 385 ~~~-~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~---~~~~p~r~~g~Hff~P~~~~~- 459 (715)
T PRK11730 385 LDY-AGFERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAK---ALKRPENFCGMHFFNPVHRMP- 459 (715)
T ss_pred CCH-HHhcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCCccEEEEecCCcccccc-
Confidence 344 5579999999999976653 69999999999999875 778888877765 223334799999988887731
Q ss_pred HHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 247 LYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 247 ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~ 287 (417)
.-= +.++...+.+..+.+.+++..+|..
T Consensus 460 ------------lVE-vv~g~~T~~~~~~~~~~~~~~lgk~ 487 (715)
T PRK11730 460 ------------LVE-VIRGEKTSDETIATVVAYASKMGKT 487 (715)
T ss_pred ------------eEE-eeCCCCCCHHHHHHHHHHHHHhCCc
Confidence 112 3446677889999999999999975
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.1e-07 Score=101.67 Aligned_cols=148 Identities=9% Similarity=0.097 Sum_probs=110.9
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHH-----------HHHcC-------------ceec
Q 014834 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAG-------------FTEE 165 (417)
Q Consensus 110 gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~-----------A~~~G-------------~~~~ 165 (417)
.+++|+|||.|.||..||..+..+ |++|++.+.+.+. .+. ..+.| +..
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~------G~~V~l~d~~~~~-l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~- 383 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASK------GTPIVMKDINQHS-LDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITP- 383 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhC------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE-
Confidence 568999999999999999999999 9999888765432 221 11122 221
Q ss_pred CCCcCCHHhhcCcCCEEEEccCCchHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCch
Q 014834 166 NGTLGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGP 242 (417)
Q Consensus 166 ~~~~~s~~Ea~~~ADIViLavpd~~~~--~Vl~eI~~~lk~gaiLi-~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~ 242 (417)
..+. +.+++||+||=++|..... +++.++-+.++|+++|. -++++.+..+.. ..+..-+|+..|+=.|.+
T Consensus 384 ---~~~~-~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~---~~~~p~r~ig~Hff~P~~ 456 (714)
T TIGR02437 384 ---TLSY-AGFDNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAK---ALKRPENFCGMHFFNPVH 456 (714)
T ss_pred ---eCCH-HHhcCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCcccEEEEecCCCcc
Confidence 2344 4579999999999976653 69999999999999875 777888877765 223334799999988888
Q ss_pred hHHHHHhhcccccCCCceEE-EeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 243 SVRRLYVQGKEINGAGINSS-FAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 243 ~vr~ly~~G~~~~G~Gv~~l-iav~~dvsgea~e~a~~L~~alG~~ 287 (417)
. ++.+ +.++...+.+.++.+.+++..+|..
T Consensus 457 ~---------------~~lvEvv~g~~Ts~~~~~~~~~~~~~lgk~ 487 (714)
T TIGR02437 457 R---------------MPLVEVIRGEKSSDETIATVVAYASKMGKT 487 (714)
T ss_pred c---------------CceEeecCCCCCCHHHHHHHHHHHHHcCCE
Confidence 7 3331 3446677889999999999999975
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.4e-07 Score=102.86 Aligned_cols=153 Identities=11% Similarity=0.109 Sum_probs=110.6
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChh----------hHHHHHHcCceec-------CC--CcC
Q 014834 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----------SFAEARAAGFTEE-------NG--TLG 170 (417)
Q Consensus 110 gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~----------s~~~A~~~G~~~~-------~~--~~~ 170 (417)
.+++|+|||.|.||..||..+..+ |++|++.+.+.+. .++...+.|-... +. ...
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~------G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~ 407 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDK------GLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTL 407 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhC------CCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeC
Confidence 458999999999999999999999 9999888765331 1111112221100 00 023
Q ss_pred CHHhhcCcCCEEEEccCCchHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHH
Q 014834 171 DIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRL 247 (417)
Q Consensus 171 s~~Ea~~~ADIViLavpd~~~~--~Vl~eI~~~lk~gaiLi-~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~l 247 (417)
++ +.+++||+||=+++..... +++.++.+.++|+++|. -++++.+..+.. .....-+|+..|+=.|.+.
T Consensus 408 ~~-~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~---~~~~p~r~ig~Hff~P~~~---- 479 (737)
T TIGR02441 408 DY-SGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAA---VSSRPEKVIGMHYFSPVDK---- 479 (737)
T ss_pred CH-HHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCccceEEEeccCCccc----
Confidence 45 4679999999999977653 69999999999999875 778888877765 2223347999999888877
Q ss_pred HhhcccccCCCceEE-EeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 248 YVQGKEINGAGINSS-FAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 248 y~~G~~~~G~Gv~~l-iav~~dvsgea~e~a~~L~~alG~~ 287 (417)
++.+ +..+...+.+.++.+.+++..+|..
T Consensus 480 -----------m~LvEvv~g~~Ts~~~~~~~~~~~~~lgk~ 509 (737)
T TIGR02441 480 -----------MQLLEIITHDGTSKDTLASAVAVGLKQGKV 509 (737)
T ss_pred -----------CceEEEeCCCCCCHHHHHHHHHHHHHCCCe
Confidence 3221 3346677889999999999999975
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.8e-07 Score=93.96 Aligned_cols=201 Identities=14% Similarity=0.100 Sum_probs=108.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec------------CCCcCCHHhhcCcC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE------------NGTLGDIYETISGS 179 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~------------~~~~~s~~Ea~~~A 179 (417)
+||||||+|.||..+|.+|.+ |++|+++++..++ .+... .|..+. .-.+.+..+++++|
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-------~~~V~g~D~~~~~-ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~a 77 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-------SRQVVGFDVNKKR-ILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKEC 77 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-------CCEEEEEeCCHHH-HHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCC
Confidence 789999999999999999764 6888777665443 33333 443210 00123445678999
Q ss_pred CEEEEccCCch-------HHHHH---HHHHhcCCCCcEEEEecCchhh--------hhhh-cccCCCCCccEEEe---cc
Q 014834 180 DLVLLLISDAA-------QADNY---EKIFSCMKPNSILGLSHGFLLG--------HLQS-IGLDFPKNIGVIAV---CP 237 (417)
Q Consensus 180 DIViLavpd~~-------~~~Vl---~eI~~~lk~gaiLi~a~G~~i~--------~~~~-~~i~~~~dv~VI~v---~P 237 (417)
|+||+|+|... ...++ +.|.+++++|++|++.+-+... .+++ .++.... ++..+ .|
T Consensus 78 dvvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~--~~~~~~~PE~ 155 (425)
T PRK15182 78 NFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQ--DFYVGYSPER 155 (425)
T ss_pred CEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCC--CeeEeeCCCc
Confidence 99999999541 12333 4688999999998866544221 1111 0112111 33333 33
Q ss_pred CCCchhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC-ceeccchhhhhhhhccccchhhhchHHHH
Q 014834 238 KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP-FTFATTLEQEYKSDIFGERGILLGAVHGI 316 (417)
Q Consensus 238 ntpg~~vr~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~-~~iettf~~e~~~dl~ge~t~L~G~~pA~ 316 (417)
-.+|..+.++. -.+- +.... +.+..+.+..+...+... .+..++.. .-+.-.+-+.+ +...--++
T Consensus 156 v~~G~a~~~~~---------~~~r-iv~G~--~~~~~~~~~~ly~~~~~~~~~~~~~~~-~AE~~Kl~~N~-~~av~Ia~ 221 (425)
T PRK15182 156 INPGDKKHRLT---------NIKK-ITSGS--TAQIAELIDEVYQQIISAGTYKAESIK-VAEAAKVIENT-QRDLNIAL 221 (425)
T ss_pred CCCCccccccc---------CCCe-EEECC--CHHHHHHHHHHHHHHhhcCcEEecCHH-HHHHHHHHHHH-HHHHHHHH
Confidence 34444321111 1223 22233 356777888888887521 12222111 11111111111 12222335
Q ss_pred HHHHHHHHHHcCCCHHHHHHH
Q 014834 317 VESLFRRFTENGMSEDLAYKN 337 (417)
Q Consensus 317 iea~~d~~v~~Gl~~e~A~~~ 337 (417)
+--++..+.+.|++.++.++.
T Consensus 222 ~NE~a~lae~~GiD~~~v~~a 242 (425)
T PRK15182 222 VNELAIIFNRLNIDTEAVLRA 242 (425)
T ss_pred HHHHHHHHHHhCcCHHHHHHH
Confidence 555677778889888877654
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.6e-07 Score=93.33 Aligned_cols=95 Identities=19% Similarity=0.283 Sum_probs=72.2
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
..+.| ++|+|||+|.||.++|+.|+.. |.+|++++|+..+ .+.+.+.|.... ...+..+.++++|+||++
T Consensus 147 ~~l~g-k~v~IiG~G~iG~avA~~L~~~------G~~V~v~~R~~~~-~~~~~~~g~~~~--~~~~l~~~l~~aDiVint 216 (287)
T TIGR02853 147 FTIHG-SNVMVLGFGRTGMTIARTFSAL------GARVFVGARSSAD-LARITEMGLIPF--PLNKLEEKVAEIDIVINT 216 (287)
T ss_pred CCCCC-CEEEEEcChHHHHHHHHHHHHC------CCEEEEEeCCHHH-HHHHHHCCCeee--cHHHHHHHhccCCEEEEC
Confidence 46788 9999999999999999999998 9999988887543 344555666530 123567889999999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEecC
Q 014834 186 ISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 186 vpd~~~~~Vl~eI~~~lk~gaiLi~a~G 213 (417)
+|..... .+..+.|+++.+|++.+.
T Consensus 217 ~P~~ii~---~~~l~~~k~~aliIDlas 241 (287)
T TIGR02853 217 IPALVLT---ADVLSKLPKHAVIIDLAS 241 (287)
T ss_pred CChHHhC---HHHHhcCCCCeEEEEeCc
Confidence 9975321 345677899998886653
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.5e-08 Score=87.40 Aligned_cols=99 Identities=17% Similarity=0.093 Sum_probs=68.6
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCC-cEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G-~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
+++ ++|+|||+|.||.++++.|++. | .+|.+++|+.++..+.+.+.+.........+.+++++++|+||+++
T Consensus 17 ~~~-~~i~iiG~G~~g~~~a~~l~~~------g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~ 89 (155)
T cd01065 17 LKG-KKVLILGAGGAARAVAYALAEL------GAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTT 89 (155)
T ss_pred CCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCc
Confidence 567 8999999999999999999987 6 5788887765554455555453100001456778889999999999
Q ss_pred CCchH-H-HHHHHHHhcCCCCcEEEEecCc
Q 014834 187 SDAAQ-A-DNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 187 pd~~~-~-~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
|+..+ . .+. .....++++++|++++-.
T Consensus 90 ~~~~~~~~~~~-~~~~~~~~~~~v~D~~~~ 118 (155)
T cd01065 90 PVGMKPGDELP-LPPSLLKPGGVVYDVVYN 118 (155)
T ss_pred CCCCCCCCCCC-CCHHHcCCCCEEEEcCcC
Confidence 99886 1 111 011236788888877543
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.4e-06 Score=94.53 Aligned_cols=153 Identities=12% Similarity=0.137 Sum_probs=109.4
Q ss_pred CCCEEEEEcccchHHHHHHHHH-hhhhhhcCCcEEEEEecCChhhHHHH-----------HHcCceec-------CC--C
Q 014834 110 GINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEE-------NG--T 168 (417)
Q Consensus 110 gmkkIgIIG~G~mG~AiA~~Lr-~s~~~~~~G~~ViVg~r~~s~s~~~A-----------~~~G~~~~-------~~--~ 168 (417)
.++||+|||.|.||..+|.-+. .+ |++|++.+.+.+ ..+.+ .+.|-... .. .
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~------G~~V~l~d~~~~-~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 375 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKA------GIPVRIKDINPQ-GINNALKYAWKLLDKGVKRRHMTPAERDNQMALITG 375 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHc------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEE
Confidence 4589999999999999999886 58 999988876533 12221 11121100 00 1
Q ss_pred cCCHHhhcCcCCEEEEccCCchH--HHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHH
Q 014834 169 LGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVR 245 (417)
Q Consensus 169 ~~s~~Ea~~~ADIViLavpd~~~--~~Vl~eI~~~lk~gaiLi-~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr 245 (417)
..++ +.+++||+||=++|.... .+++.+|-++++++++|. -++++++..+.+ .+...-+++.+|+=.|.+.++
T Consensus 376 ~~~~-~~~~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~---~~~~p~r~~g~HffnP~~~~~ 451 (699)
T TIGR02440 376 TTDY-RGFKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAA---AASRPENVIGLHYFSPVEKMP 451 (699)
T ss_pred eCCh-HHhccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHH---hcCCcccEEEEecCCccccCc
Confidence 2344 568999999999997765 369999999999999875 778888877765 223334799999988887621
Q ss_pred HHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 246 ~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~ 287 (417)
.-= +..+...+.+..+.+.+++..+|..
T Consensus 452 -------------lVE-vv~g~~T~~~~~~~~~~~~~~~gk~ 479 (699)
T TIGR02440 452 -------------LVE-VIPHAGTSEQTIATTVALAKKQGKT 479 (699)
T ss_pred -------------eEE-EeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 112 3446677889999999999999975
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.8e-06 Score=84.76 Aligned_cols=154 Identities=20% Similarity=0.189 Sum_probs=97.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec--CCC-------cCCHHhhcCcCCEE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGT-------LGDIYETISGSDLV 182 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~--~~~-------~~s~~Ea~~~ADIV 182 (417)
+||+|||.|.||..+|..|.++ |++|.+..|... +.-.+.|+... ++. ..+..+....+|+|
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~------g~~V~~~~r~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 76 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARA------GFDVHFLLRSDY---EAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWV 76 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHC------CCeEEEEEeCCH---HHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEE
Confidence 6899999999999999999999 999988887532 33344564421 110 11222346789999
Q ss_pred EEccCCchHHHHHHHHHhcCCCCcEE-EEecCchh-hhhhhcccCCCCCccEEE------eccCCCchhHHHHHhhcccc
Q 014834 183 LLLISDAAQADNYEKIFSCMKPNSIL-GLSHGFLL-GHLQSIGLDFPKNIGVIA------VCPKGMGPSVRRLYVQGKEI 254 (417)
Q Consensus 183 iLavpd~~~~~Vl~eI~~~lk~gaiL-i~a~G~~i-~~~~~~~i~~~~dv~VI~------v~Pntpg~~vr~ly~~G~~~ 254 (417)
|++||..+..++++.+.+.++++.+| .+.-|+.. ..+.. .+|+. +++. .....|+.+. .
T Consensus 77 ilavK~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~---~~~~~-~v~~g~~~~~a~~~~pg~v~---------~ 143 (313)
T PRK06249 77 LVGLKTTANALLAPLIPQVAAPDAKVLLLQNGLGVEEQLRE---ILPAE-HLLGGLCFICSNRVGPGVIH---------H 143 (313)
T ss_pred EEEecCCChHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHH---HCCCC-cEEEEeeeEeEecCCCeEEE---------E
Confidence 99999988888999999999888755 46678754 23332 34443 3332 3344555441 1
Q ss_pred cCCCceEEEeecCCCC-----HHHHHHHHHHHHHhCCCc
Q 014834 255 NGAGINSSFAVHQDVD-----GRATNVALGWSVALGSPF 288 (417)
Q Consensus 255 ~G~Gv~~liav~~dvs-----gea~e~a~~L~~alG~~~ 288 (417)
.|.|-.. +....... .+..+...+++...|...
T Consensus 144 ~~~g~~~-iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~~ 181 (313)
T PRK06249 144 LAYGRVN-LGYHSGPAADDGITARVEEGAALFRAAGIDS 181 (313)
T ss_pred CCCCcEE-EecCCCCcccchHHHHHHHHHHHHHhCCCCc
Confidence 1344433 33322222 345556677888888653
|
|
| >PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=3e-07 Score=101.09 Aligned_cols=135 Identities=13% Similarity=-0.037 Sum_probs=99.2
Q ss_pred EEEccCCchHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCC-ccEEEeccCCCchhHHHHHhhcccccCCCce
Q 014834 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKN-IGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (417)
Q Consensus 182 ViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~d-v~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~ 260 (417)
||||+|+....++++++.++++++++|+++++++-.-.+.....++++ .+||..|| +.|.. ...|+.......+|.+
T Consensus 1 vila~Pv~~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HP-MaG~e-~~G~~~a~~~Lf~~~~ 78 (673)
T PRK11861 1 VLLAAPVAQTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHP-IAGRE-SSGVDAALADLYVGRN 78 (673)
T ss_pred CEEEcCHHHHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCC-cCcCc-chhhhhhChhHhCCCe
Confidence 689999999999999999999999999999999743222111133432 57999999 44555 3455555555568899
Q ss_pred EEEeecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHHHHHHHHHHH
Q 014834 261 SSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESLFRRF 324 (417)
Q Consensus 261 ~liav~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA~iea~~d~~ 324 (417)
+++|+..+.+.++++.+++++..+|+ +++.++.++|++.- +.+++.-|-+.-++.+.+
T Consensus 79 ~il~p~~~~~~~~~~~~~~l~~~~Ga-~~~~~~~~~HD~~~-----A~iShlpH~~a~~l~~~~ 136 (673)
T PRK11861 79 VVLCALPENAPDALARVEAMWRAARA-DVRAMSAEQHDRVF-----AAVSHLPHVLSFALVEQI 136 (673)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHcCC-EEEECCHHHHHHHH-----HHHhhHHHHHHHHHHHHH
Confidence 99999998888999999999999995 67777888887752 334444444444555544
|
|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=7.6e-08 Score=99.20 Aligned_cols=91 Identities=16% Similarity=0.218 Sum_probs=69.2
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
..+.| ++|||||+|+||..+|+.|+.. |++|+++++.... ...... ..+++|++++||+|+++
T Consensus 112 ~~L~g-ktvGIIG~G~IG~~vA~~l~a~------G~~V~~~dp~~~~-----~~~~~~-----~~~L~ell~~sDiI~lh 174 (378)
T PRK15438 112 FSLHD-RTVGIVGVGNVGRRLQARLEAL------GIKTLLCDPPRAD-----RGDEGD-----FRSLDELVQEADILTFH 174 (378)
T ss_pred CCcCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCcccc-----cccccc-----cCCHHHHHhhCCEEEEe
Confidence 36889 9999999999999999999988 9999876542111 111111 45899999999999999
Q ss_pred cCCch-----HHHHHH-HHHhcCCCCcEEEEec-C
Q 014834 186 ISDAA-----QADNYE-KIFSCMKPNSILGLSH-G 213 (417)
Q Consensus 186 vpd~~-----~~~Vl~-eI~~~lk~gaiLi~a~-G 213 (417)
+|-.. ...++. +.+..||+|++|+-++ |
T Consensus 175 ~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG 209 (378)
T PRK15438 175 TPLFKDGPYKTLHLADEKLIRSLKPGAILINACRG 209 (378)
T ss_pred CCCCCCcccccccccCHHHHhcCCCCcEEEECCCc
Confidence 99554 334564 6788999999988554 5
|
|
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.4e-07 Score=97.42 Aligned_cols=113 Identities=19% Similarity=0.195 Sum_probs=76.0
Q ss_pred hcccccc-cc---cchhhccCCCEEEEEcccchHHHHHHHHH-hhhhhhcCCcEEEEEecCChhhHHH-HHHcCc-----
Q 014834 94 VRGGRDL-FK---LLPDAFNGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAE-ARAAGF----- 162 (417)
Q Consensus 94 vr~g~~~-f~---~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr-~s~~~~~~G~~ViVg~r~~s~s~~~-A~~~G~----- 162 (417)
+|+|+|. +. .....+.| ++|||||+|.+|..+|+.|+ .. |++|+++++........ ....|.
T Consensus 145 ~~~g~w~~~~~~~~~g~~L~g-ktvGIiG~G~IG~~vA~~l~~~f------Gm~V~~~d~~~~~~~~~~~~~~~~~l~~~ 217 (386)
T PLN02306 145 MRAGLYEGWLPHLFVGNLLKG-QTVGVIGAGRIGSAYARMMVEGF------KMNLIYYDLYQSTRLEKFVTAYGQFLKAN 217 (386)
T ss_pred HHcCCCccccccccCCcCCCC-CEEEEECCCHHHHHHHHHHHhcC------CCEEEEECCCCchhhhhhhhhhccccccc
Confidence 5667663 21 11267999 99999999999999999986 44 99987766543211111 111221
Q ss_pred --eecC-CCcCCHHhhcCcCCEEEEccCCchH-HHHHH-HHHhcCCCCcEEEEe-cC
Q 014834 163 --TEEN-GTLGDIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLS-HG 213 (417)
Q Consensus 163 --~~~~-~~~~s~~Ea~~~ADIViLavpd~~~-~~Vl~-eI~~~lk~gaiLi~a-~G 213 (417)
...+ ....+++|++++||+|++++|-... ..++. +.+..||+|++|+-+ =|
T Consensus 218 ~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG 274 (386)
T PLN02306 218 GEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRG 274 (386)
T ss_pred ccccccccccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCc
Confidence 0000 0124899999999999999996655 45665 688899999998844 35
|
|
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.8e-06 Score=95.63 Aligned_cols=153 Identities=12% Similarity=0.161 Sum_probs=110.7
Q ss_pred CCCEEEEEcccchHHHHHHHHH-hhhhhhcCCcEEEEEecCChhhHHHH-----------HHcCceecC---------CC
Q 014834 110 GINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEEN---------GT 168 (417)
Q Consensus 110 gmkkIgIIG~G~mG~AiA~~Lr-~s~~~~~~G~~ViVg~r~~s~s~~~A-----------~~~G~~~~~---------~~ 168 (417)
.++||+|||.|.||..+|..+. .. |++|++.+.+.+ ..+.+ .+.|-.... ..
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~------G~~V~l~d~~~~-~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 380 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKA------GLPVRIKDINPQ-GINHALKYSWDLLDKKVKRRHLKPSERDKQMALISG 380 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHc------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEE
Confidence 4589999999999999999988 77 999988876533 22221 122211000 00
Q ss_pred cCCHHhhcCcCCEEEEccCCchH--HHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHH
Q 014834 169 LGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVR 245 (417)
Q Consensus 169 ~~s~~Ea~~~ADIViLavpd~~~--~~Vl~eI~~~lk~gaiLi-~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr 245 (417)
+.+. +++++||+||=++|.... .+++.++.++++|+++|. -++++.+..+.+ .....-+++.+|+=.|.+.++
T Consensus 381 ~~~~-~~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~---~~~~p~r~ig~Hff~P~~~~~ 456 (708)
T PRK11154 381 TTDY-RGFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAA---AAARPEQVIGLHYFSPVEKMP 456 (708)
T ss_pred eCCh-HHhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHH---hcCcccceEEEecCCccccCc
Confidence 2344 567999999999997665 369999999999999875 778888877765 223334799999988887631
Q ss_pred HHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 246 ~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~ 287 (417)
.-= +.++...+.+..+.+.+++..+|..
T Consensus 457 -------------lVE-vv~g~~Ts~~~~~~~~~~~~~~gk~ 484 (708)
T PRK11154 457 -------------LVE-VIPHAKTSAETIATTVALAKKQGKT 484 (708)
T ss_pred -------------eEE-EECCCCCCHHHHHHHHHHHHHcCCc
Confidence 112 4457778889999999999999975
|
|
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.5e-06 Score=91.78 Aligned_cols=139 Identities=14% Similarity=0.042 Sum_probs=96.1
Q ss_pred hHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHc----CceecCCCcCCHHhhcCc---CCEEEEccCCchH-HH
Q 014834 122 QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISG---SDLVLLLISDAAQ-AD 193 (417)
Q Consensus 122 mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~----G~~~~~~~~~s~~Ea~~~---ADIViLavpd~~~-~~ 193 (417)
||.+||+||.+. |++|.|++|+.++..+..... |+.. ..+++|+++. +|+||+++|+... .+
T Consensus 1 MG~~mA~nL~~~------G~~V~v~nrt~~~~~~l~~~~g~~~g~~~----~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~ 70 (459)
T PRK09287 1 MGKNLALNIASH------GYTVAVYNRTPEKTDEFLAEEGKGKKIVP----AYTLEEFVASLEKPRKILLMVKAGAPVDA 70 (459)
T ss_pred CcHHHHHHHHhC------CCeEEEECCCHHHHHHHHHhhCCCCCeEe----eCCHHHHHhhCCCCCEEEEECCCchHHHH
Confidence 899999999999 999999999866655555432 4654 6789998875 8999999998765 57
Q ss_pred HHHHHHhcCCCCcEEEEecCchh---hhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeecCCCC
Q 014834 194 NYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (417)
Q Consensus 194 Vl~eI~~~lk~gaiLi~a~G~~i---~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~dvs 270 (417)
|++++.++|.+|.+|++.+-... ....+ ..-.+++.++- +|-.=+.. .-+ .|- + +-+.. +
T Consensus 71 Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~--~l~~~Gi~fvd-apVSGG~~---gA~-------~G~-s-iM~GG--~ 133 (459)
T PRK09287 71 VIEQLLPLLEKGDIIIDGGNSNYKDTIRREK--ELAEKGIHFIG-MGVSGGEE---GAL-------HGP-S-IMPGG--Q 133 (459)
T ss_pred HHHHHHhcCCCCCEEEECCCCCHHHHHHHHH--HHHhcCCeEEe-cCCCCCHH---HHh-------cCC-E-EEEeC--C
Confidence 88999999999999998874321 11111 11134566553 44221211 111 344 4 34555 4
Q ss_pred HHHHHHHHHHHHHhCCC
Q 014834 271 GRATNVALGWSVALGSP 287 (417)
Q Consensus 271 gea~e~a~~L~~alG~~ 287 (417)
.++.+.++-++..+|..
T Consensus 134 ~~a~~~~~piL~~ia~~ 150 (459)
T PRK09287 134 KEAYELVAPILEKIAAK 150 (459)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 68999999999999863
|
|
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.59 E-value=8.8e-08 Score=98.86 Aligned_cols=91 Identities=16% Similarity=0.191 Sum_probs=69.9
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
..+.| ++|||||+|+||..+|+.|+.. |++|+++++.... . .+... ..+++|++++||+|+++
T Consensus 112 ~~l~g-ktvGIIG~G~IG~~va~~l~a~------G~~V~~~Dp~~~~-----~-~~~~~----~~~l~ell~~aDiV~lh 174 (381)
T PRK00257 112 VDLAE-RTYGVVGAGHVGGRLVRVLRGL------GWKVLVCDPPRQE-----A-EGDGD----FVSLERILEECDVISLH 174 (381)
T ss_pred CCcCc-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCcccc-----c-ccCcc----ccCHHHHHhhCCEEEEe
Confidence 46889 9999999999999999999988 9999877543211 1 12121 46899999999999999
Q ss_pred cCCch-----HHHHHH-HHHhcCCCCcEEEEe-cC
Q 014834 186 ISDAA-----QADNYE-KIFSCMKPNSILGLS-HG 213 (417)
Q Consensus 186 vpd~~-----~~~Vl~-eI~~~lk~gaiLi~a-~G 213 (417)
+|... ...++. +.+..||+|++|+-+ -|
T Consensus 175 ~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG 209 (381)
T PRK00257 175 TPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRG 209 (381)
T ss_pred CcCCCCccccccccCCHHHHhcCCCCeEEEECCCC
Confidence 99754 334664 578889999998844 45
|
|
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.5e-06 Score=84.76 Aligned_cols=152 Identities=16% Similarity=0.221 Sum_probs=109.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCh----------hhHHHHHHcCceecC---------CCcCC
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----------RSFAEARAAGFTEEN---------GTLGD 171 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s----------~s~~~A~~~G~~~~~---------~~~~s 171 (417)
++||+|||.|.||..+|..+... |++|.+.+.+.. ++.+++.+.|-..++ ....+
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~------G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~ 76 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALA------GYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTD 76 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhc------CCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCc
Confidence 58999999999999999999887 999998887632 222233333321110 00122
Q ss_pred HHhhcCcCCEEEEccCCchH--HHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHH
Q 014834 172 IYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (417)
Q Consensus 172 ~~Ea~~~ADIViLavpd~~~--~~Vl~eI~~~lk~gaiLi-~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly 248 (417)
+. ++++||+||=+++-... .++|.++-.+.+|+++|. -.+++++..+.+ ...-|+ +|+..|+=-|.+.
T Consensus 77 ~~-~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~-~~~rpe--r~iG~HFfNP~~~----- 147 (307)
T COG1250 77 LA-ALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAE-ALKRPE--RFIGLHFFNPVPL----- 147 (307)
T ss_pred hh-HhccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHH-HhCCch--hEEEEeccCCCCc-----
Confidence 22 78999999999996554 469999999999999985 888898876665 223333 6999999888887
Q ss_pred hhcccccCCCceEE-EeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 249 VQGKEINGAGINSS-FAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 249 ~~G~~~~G~Gv~~l-iav~~dvsgea~e~a~~L~~alG~~ 287 (417)
|+.+ +......+++..+.+.+++..+|..
T Consensus 148 ----------m~LVEvI~g~~T~~e~~~~~~~~~~~igK~ 177 (307)
T COG1250 148 ----------MPLVEVIRGEKTSDETVERVVEFAKKIGKT 177 (307)
T ss_pred ----------ceeEEEecCCCCCHHHHHHHHHHHHHcCCC
Confidence 3332 2234456679999999999999954
|
|
| >KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.3e-07 Score=92.44 Aligned_cols=160 Identities=20% Similarity=0.178 Sum_probs=113.2
Q ss_pred ccchhhhccccccccc-chhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecC
Q 014834 88 NRDEFIVRGGRDLFKL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN 166 (417)
Q Consensus 88 ~~~e~~vr~g~~~f~~-~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~ 166 (417)
++-..-++.|+|.... ...++.| |++||||+|.+|.-.|..++.- |+.|+.++.- ...+++++.|+.
T Consensus 123 ~~A~~s~k~g~wnr~~~~G~el~G-KTLgvlG~GrIGseVA~r~k~~------gm~vI~~dpi--~~~~~~~a~gvq--- 190 (406)
T KOG0068|consen 123 GQASASMKEGKWNRVKYLGWELRG-KTLGVLGLGRIGSEVAVRAKAM------GMHVIGYDPI--TPMALAEAFGVQ--- 190 (406)
T ss_pred chhheeeecCceeecceeeeEEec-cEEEEeecccchHHHHHHHHhc------CceEEeecCC--CchHHHHhccce---
Confidence 3444557889998766 3689999 9999999999999999999988 8888655544 346788889998
Q ss_pred CCcCCHHhhcCcCCEEEEccCCchHH-HHHH-HHHhcCCCCcEEEE-ecC-c-----hhhhhhhcccCCCCCccEEEecc
Q 014834 167 GTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGL-SHG-F-----LLGHLQSIGLDFPKNIGVIAVCP 237 (417)
Q Consensus 167 ~~~~s~~Ea~~~ADIViLavpd~~~~-~Vl~-eI~~~lk~gaiLi~-a~G-~-----~i~~~~~~~i~~~~dv~VI~v~P 237 (417)
+.+.+|++..||+|-|.+|-.... .++. +-+..||+|..|+- +-| + .+.-+++ +..-..-+||.--.|
T Consensus 191 --~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~s-G~vaGaAlDVy~~Ep 267 (406)
T KOG0068|consen 191 --LVSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEPALVRALDS-GQVAGAALDVYPEEP 267 (406)
T ss_pred --eeeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechHHHHHHHhc-CcccceeeecccCCC
Confidence 679999999999999999976654 5665 57788999998774 434 3 1222222 223334567777777
Q ss_pred CCCchhHHHHHhhcccccCCCceEEEeecCCCCH
Q 014834 238 KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDG 271 (417)
Q Consensus 238 ntpg~~vr~ly~~G~~~~G~Gv~~liav~~dvsg 271 (417)
..-+.. +++-.- -+.+.++|+..+-
T Consensus 268 p~~~~~-~~Lv~h--------pnVi~TpHlgasT 292 (406)
T KOG0068|consen 268 PKNGWD-SELVSH--------PNVIVTPHLGAST 292 (406)
T ss_pred Cccchh-HHHhcC--------CceeecCccccch
Confidence 654422 222211 3456788887664
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.3e-07 Score=82.86 Aligned_cols=95 Identities=23% Similarity=0.265 Sum_probs=67.0
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
..+.| |++.|+|||..|..+|+.|+.. |.+|+|....+ -..-+|..+|+.+ .+.+|+++++|+||.+
T Consensus 19 ~~l~G-k~vvV~GYG~vG~g~A~~lr~~------Ga~V~V~e~DP-i~alqA~~dGf~v-----~~~~~a~~~adi~vta 85 (162)
T PF00670_consen 19 LMLAG-KRVVVIGYGKVGKGIARALRGL------GARVTVTEIDP-IRALQAAMDGFEV-----MTLEEALRDADIFVTA 85 (162)
T ss_dssp S--TT-SEEEEE--SHHHHHHHHHHHHT------T-EEEEE-SSH-HHHHHHHHTT-EE-----E-HHHHTTT-SEEEE-
T ss_pred eeeCC-CEEEEeCCCcccHHHHHHHhhC------CCEEEEEECCh-HHHHHhhhcCcEe-----cCHHHHHhhCCEEEEC
Confidence 45778 9999999999999999999999 99999887653 4445667789984 6899999999999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEecCch
Q 014834 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 186 vpd~~~~~Vl~eI~~~lk~gaiLi~a~G~~ 215 (417)
|-...+. -.+.++.||+|++|..++.|.
T Consensus 86 TG~~~vi--~~e~~~~mkdgail~n~Gh~d 113 (162)
T PF00670_consen 86 TGNKDVI--TGEHFRQMKDGAILANAGHFD 113 (162)
T ss_dssp SSSSSSB---HHHHHHS-TTEEEEESSSST
T ss_pred CCCcccc--CHHHHHHhcCCeEEeccCcCc
Confidence 9875431 124556789999998777764
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase | Back alignment and domain information |
|---|
Probab=98.49 E-value=9.8e-06 Score=80.17 Aligned_cols=176 Identities=16% Similarity=0.220 Sum_probs=131.1
Q ss_pred HcCceecCCCcCCHHhhcCcCCEEEEccCCch-HHHHHHHHHhcCCCCcEEEEecCchhh---hhhhcccCCCCCccEEE
Q 014834 159 AAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFLLG---HLQSIGLDFPKNIGVIA 234 (417)
Q Consensus 159 ~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~-~~~Vl~eI~~~lk~gaiLi~a~G~~i~---~~~~~~i~~~~dv~VI~ 234 (417)
+.|+.+ +.|-.|+++++|++|+=+|-.. +.+++++|.+++++|++|..+.-++.. ++-+ .+. ++|+.|..
T Consensus 124 daGvkV----tsDD~EAv~~aei~I~ftPfG~~q~~Iikkii~~lpEgAII~~tCTIpt~~ly~ilE-~l~-R~DvgVsS 197 (340)
T TIGR01723 124 DLGLKV----TTDDREAVEDADIIITWLPKGNKQPDIIKKFIDDIPEGAIVTHACTIPTTKFAKIFE-DLG-REDLNVTS 197 (340)
T ss_pred HcCceE----ecCcHHHhcCCCEEEEEcCCCCCchHHHHHHHhhCCCCCEEeccccCChHHHHHHHH-hhC-cccCCeec
Confidence 578886 6778899999999999999766 789999999999999999977766421 2212 122 58999999
Q ss_pred eccCCCchhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHH
Q 014834 235 VCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVH 314 (417)
Q Consensus 235 v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~p 314 (417)
.||-+ .+.. +| -.++ ....+++++.+...+|.+..|+. .+ ..+-++.+.++-.|..+.
T Consensus 198 ~HPaa-VPgt------------~~-q~Yi-~egyAtEEqI~klveL~~sa~k~-ay------~~PA~LvspV~DMgS~VT 255 (340)
T TIGR01723 198 YHPGC-VPEM------------KG-QVYI-AEGYASEEAVNKLYELGKKARGK-AF------KMPANLLGPVCDMCSAVT 255 (340)
T ss_pred cCCCC-CCCC------------CC-ceEe-ecccCCHHHHHHHHHHHHHhCCC-ee------ecchhhccchhhHHHHHH
Confidence 99943 2221 12 1223 37788999999999999999985 11 234456666555555555
Q ss_pred HH----HHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhccc
Q 014834 315 GI----VESLFRRFTE-NGMSEDLAYKNTVECITGIISKIISTQGMLAVYNSFS 363 (417)
Q Consensus 315 A~----iea~~d~~v~-~Gl~~e~A~~~~~q~~~~g~~~li~e~G~~~l~~~vs 363 (417)
+. +-.-++..++ .|-|.+.+-..+.+++. .++.|+.++|+..|-+.+.
T Consensus 256 Av~~aGiL~Y~~~~t~IlgAP~~miq~qa~eaL~-tmasLme~~GI~gm~~aLn 308 (340)
T TIGR01723 256 AIVYAGLLAYRDAVTKILGAPADFAQMMADEALT-QIHNLMEEKGIDKMEEALD 308 (340)
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHhcC
Confidence 53 3344555554 69999999999999999 9999999999999988876
|
This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201. |
| >PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.1e-05 Score=79.65 Aligned_cols=176 Identities=18% Similarity=0.215 Sum_probs=129.7
Q ss_pred HcCceecCCCcCCHHhhcCcCCEEEEccCCch-HHHHHHHHHhcCCCCcEEEEecCch---hhhhhhcccCCCCCccEEE
Q 014834 159 AAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFL---LGHLQSIGLDFPKNIGVIA 234 (417)
Q Consensus 159 ~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~-~~~Vl~eI~~~lk~gaiLi~a~G~~---i~~~~~~~i~~~~dv~VI~ 234 (417)
+.|+.+ +.|-.|+++++|++|+=+|-.. +.+++++|.+++++|++|..+.-++ +.++-+ . .=|+|+.|..
T Consensus 126 daGvkV----tsDD~EAvk~aei~I~ftPfG~~t~~Iikki~~~ipEgAII~~tCTIpt~~ly~~le-~-l~R~DvgIsS 199 (342)
T PRK00961 126 DLGLKV----TTDDREAVADADIVITWLPKGGMQPDIIEKFADDIKEGAIVTHACTIPTTKFAKIFK-D-LGRDDLNVTS 199 (342)
T ss_pred HcCceE----ecCcHHHhcCCCEEEEecCCCCCchHHHHHHHhhCCCCCEEeccccCCHHHHHHHHH-H-hCcccCCeec
Confidence 478886 6778899999999999999766 7899999999999999999777664 222211 1 2268999999
Q ss_pred eccCCCchhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHH
Q 014834 235 VCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVH 314 (417)
Q Consensus 235 v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~p 314 (417)
.||-+ .+.. .|-.. ++ ...+++++.+...+|.+..|+. ++ ..+-++.+.++-.+..+.
T Consensus 200 ~HPaa-VPgt------------~Gq~~-i~-egyAtEEqI~klveL~~sa~k~-ay------~~PA~lvspV~DMgS~VT 257 (342)
T PRK00961 200 YHPGA-VPEM------------KGQVY-IA-EGYADEEAVEKLYEIGKKARGN-AF------KMPANLIGPVCDMCSAVT 257 (342)
T ss_pred cCCCC-CCCC------------CCcee-cc-cccCCHHHHHHHHHHHHHhCCC-ee------ecchhhcchhhhHHHHHH
Confidence 99933 2221 12212 22 5567999999999999999985 11 234456666555555555
Q ss_pred HH----HHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhccc
Q 014834 315 GI----VESLFRRFTE-NGMSEDLAYKNTVECITGIISKIISTQGMLAVYNSFS 363 (417)
Q Consensus 315 A~----iea~~d~~v~-~Gl~~e~A~~~~~q~~~~g~~~li~e~G~~~l~~~vs 363 (417)
+. +-.-++..++ .|-|.+.+-+.+.+++. .++.|+.++|+.+|-+.+.
T Consensus 258 Av~~aGiL~Y~~~~tqIlgAP~~mie~qa~eaL~-tmasLme~~GI~gm~~aLn 310 (342)
T PRK00961 258 AIVYAGILAYRDAVTQILGAPADFAQMMADEALT-QITALMREEGIDNMEEALD 310 (342)
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-HHHHHHHHhhHhHHHHhcC
Confidence 53 3444555554 69999999999999998 9999999999999988876
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=5e-06 Score=86.04 Aligned_cols=93 Identities=14% Similarity=0.108 Sum_probs=64.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH----------------cCceecCCCcCCHHhh
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----------------AGFTEENGTLGDIYET 175 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~----------------~G~~~~~~~~~s~~Ea 175 (417)
+||+|||+|.||..+|..+ .. |++|++.+++.++ .+...+ .+... ....+..++
T Consensus 1 mkI~VIGlGyvGl~~A~~l-A~------G~~VigvD~d~~k-v~~l~~g~~~~~e~~l~~~l~~~~~~l--~~t~~~~~~ 70 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLI-AQ------NHEVVALDILPSR-VAMLNDRISPIVDKEIQQFLQSDKIHF--NATLDKNEA 70 (388)
T ss_pred CEEEEECCCHHHHHHHHHH-Hh------CCcEEEEECCHHH-HHHHHcCCCCCCCcCHHHHHHhCCCcE--EEecchhhh
Confidence 4899999999999999655 46 8998877765433 333332 11111 002346788
Q ss_pred cCcCCEEEEccCCc-----------hHHHHHHHHHhcCCCCcEEEEecCch
Q 014834 176 ISGSDLVLLLISDA-----------AQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 176 ~~~ADIViLavpd~-----------~~~~Vl~eI~~~lk~gaiLi~a~G~~ 215 (417)
+++||+||+++|.. ...+++++|.+ +++|++|++.+-+.
T Consensus 71 ~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~ 120 (388)
T PRK15057 71 YRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVP 120 (388)
T ss_pred hcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecC
Confidence 89999999999954 33467778877 79999887666443
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.44 E-value=1e-06 Score=86.42 Aligned_cols=92 Identities=18% Similarity=0.182 Sum_probs=64.7
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEE-EEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCc
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~ 189 (417)
|+||||||+|.||..++++|.+. +.++++. +.++..++..+.+...|... +.+.+|++.++|+|++|+|+.
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~----~~~~elv~v~d~~~~~a~~~a~~~~~~~----~~~~~ell~~~DvVvi~a~~~ 72 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSG----RINAELYAFYDRNLEKAENLASKTGAKA----CLSIDELVEDVDLVVECASVN 72 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcC----CCCeEEEEEECCCHHHHHHHHHhcCCee----ECCHHHHhcCCCEEEEcCChH
Confidence 47999999999999999999875 0124543 44444334344445556553 568889889999999999999
Q ss_pred hHHHHHHHHHhcCCCCc-EEEEecC
Q 014834 190 AQADNYEKIFSCMKPNS-ILGLSHG 213 (417)
Q Consensus 190 ~~~~Vl~eI~~~lk~ga-iLi~a~G 213 (417)
.+.++..++.. .|+ +++.+.|
T Consensus 73 ~~~~~~~~al~---~Gk~Vvv~s~g 94 (265)
T PRK13304 73 AVEEVVPKSLE---NGKDVIIMSVG 94 (265)
T ss_pred HHHHHHHHHHH---cCCCEEEEchH
Confidence 98887776544 344 4555544
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=9.1e-07 Score=93.48 Aligned_cols=120 Identities=20% Similarity=0.229 Sum_probs=85.7
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
..+.| ++|+|||+|.+|..+|+.|+.. |.+|++..+...+ ...+...|+. ..+++++++.+|+|+++
T Consensus 250 ~~LaG-KtVgVIG~G~IGr~vA~rL~a~------Ga~ViV~e~dp~~-a~~A~~~G~~-----~~~leell~~ADIVI~a 316 (476)
T PTZ00075 250 VMIAG-KTVVVCGYGDVGKGCAQALRGF------GARVVVTEIDPIC-ALQAAMEGYQ-----VVTLEDVVETADIFVTA 316 (476)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchh-HHHHHhcCce-----eccHHHHHhcCCEEEEC
Confidence 46889 9999999999999999999988 9998887665333 3345557876 45789999999999999
Q ss_pred cCCchHHHHHH-HHHhcCCCCcEEEEecCchhh-hhhhcccCCCCCccEEEeccCCCchh
Q 014834 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGFLLG-HLQSIGLDFPKNIGVIAVCPKGMGPS 243 (417)
Q Consensus 186 vpd~~~~~Vl~-eI~~~lk~gaiLi~a~G~~i~-~~~~~~i~~~~dv~VI~v~Pntpg~~ 243 (417)
+.. ..++. +.+..||+|.+|+.++-+... .+.. +..-.++++..+.|+.....
T Consensus 317 tGt---~~iI~~e~~~~MKpGAiLINvGr~d~Ei~i~a--L~~~~~vdv~evep~v~~~~ 371 (476)
T PTZ00075 317 TGN---KDIITLEHMRRMKNNAIVGNIGHFDNEIQVAE--LEAYPGIEIVEIKPQVDRYT 371 (476)
T ss_pred CCc---ccccCHHHHhccCCCcEEEEcCCCchHHhHHH--HHhcCCceeecccCCCCeEE
Confidence 753 34664 677889999998855444311 1111 11112577777888665444
|
|
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.9e-06 Score=81.59 Aligned_cols=145 Identities=20% Similarity=0.155 Sum_probs=103.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhc---CcCCEEEEccCC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI---SGSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~---~~ADIViLavpd 188 (417)
++||.||+|.||..+.++|.+. |++|+++++ +....+.+..+|.+. ..+++|.+ ...-+|-|.+|-
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~------ghdvV~yD~-n~~av~~~~~~ga~~----a~sl~el~~~L~~pr~vWlMvPa 69 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDG------GHDVVGYDV-NQTAVEELKDEGATG----AASLDELVAKLSAPRIVWLMVPA 69 (300)
T ss_pred CcceeeccchhhHHHHHHHHhC------CCeEEEEcC-CHHHHHHHHhcCCcc----ccCHHHHHHhcCCCcEEEEEccC
Confidence 5899999999999999999999 999865554 466788888889765 55666654 456899999998
Q ss_pred ch-HHHHHHHHHhcCCCCcEEEEecCch----hhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEE
Q 014834 189 AA-QADNYEKIFSCMKPNSILGLSHGFL----LGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (417)
Q Consensus 189 ~~-~~~Vl~eI~~~lk~gaiLi~a~G~~----i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~li 263 (417)
.. ..++++++.+.|.+|.+|++-+--+ +.... ...+++++++-+--.+-..-. + +|.. +
T Consensus 70 g~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~---~l~~kgi~flD~GTSGG~~G~----~-------~G~~--l 133 (300)
T COG1023 70 GDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAK---LLAEKGIHFLDVGTSGGVWGA----E-------RGYC--L 133 (300)
T ss_pred CCchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHH---HHHhcCCeEEeccCCCCchhh----h-------cCce--E
Confidence 84 5679999999999999999876543 22222 134567888755432211111 1 2333 3
Q ss_pred eecCCCCHHHHHHHHHHHHHhC
Q 014834 264 AVHQDVDGRATNVALGWSVALG 285 (417)
Q Consensus 264 av~~dvsgea~e~a~~L~~alG 285 (417)
-+.. ++++.+...-+|.++-
T Consensus 134 MiGG--~~~a~~~~~pif~~lA 153 (300)
T COG1023 134 MIGG--DEEAVERLEPIFKALA 153 (300)
T ss_pred EecC--cHHHHHHHHHHHHhhC
Confidence 3344 5689999999999885
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.2e-06 Score=83.39 Aligned_cols=92 Identities=18% Similarity=0.218 Sum_probs=65.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEE-EEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~ 190 (417)
+||||||+|.||..++++|.+.. .++++. ++++..++..+.+.+.|... .+.+.++++.++|+|++|+|+..
T Consensus 7 irIGIIG~G~IG~~~a~~L~~~~----~~~el~aV~dr~~~~a~~~a~~~g~~~---~~~~~eell~~~D~Vvi~tp~~~ 79 (271)
T PRK13302 7 LRVAIAGLGAIGKAIAQALDRGL----PGLTLSAVAVRDPQRHADFIWGLRRPP---PVVPLDQLATHADIVVEAAPASV 79 (271)
T ss_pred eEEEEECccHHHHHHHHHHHhcC----CCeEEEEEECCCHHHHHHHHHhcCCCc---ccCCHHHHhcCCCEEEECCCcHH
Confidence 78999999999999999998620 156665 44555444455566666421 15689999999999999999999
Q ss_pred HHHHHHHHHhcCCCCc-EEEEecC
Q 014834 191 QADNYEKIFSCMKPNS-ILGLSHG 213 (417)
Q Consensus 191 ~~~Vl~eI~~~lk~ga-iLi~a~G 213 (417)
+.++..+.. +.|+ +++.+.|
T Consensus 80 h~e~~~~aL---~aGk~Vi~~s~g 100 (271)
T PRK13302 80 LRAIVEPVL---AAGKKAIVLSVG 100 (271)
T ss_pred HHHHHHHHH---HcCCcEEEecch
Confidence 888776654 4565 4444444
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.7e-06 Score=86.68 Aligned_cols=75 Identities=19% Similarity=0.231 Sum_probs=61.3
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| |+|+|||.| .||.+||.+|.+. |..|+++++.. .++.+++++||+||+
T Consensus 155 i~l~G-k~V~vIG~s~ivG~PmA~~L~~~------gatVtv~~~~t-------------------~~l~e~~~~ADIVIs 208 (301)
T PRK14194 155 GDLTG-KHAVVIGRSNIVGKPMAALLLQA------HCSVTVVHSRS-------------------TDAKALCRQADIVVA 208 (301)
T ss_pred CCCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEECCCC-------------------CCHHHHHhcCCEEEE
Confidence 46889 999999996 9999999999999 99998886541 257788999999999
Q ss_pred ccCCchHH-HHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQA-DNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~-~Vl~eI~~~lk~gaiLi~a~ 212 (417)
+++..... ..+ +++|++|++++
T Consensus 209 avg~~~~v~~~~------ik~GaiVIDvg 231 (301)
T PRK14194 209 AVGRPRLIDADW------LKPGAVVIDVG 231 (301)
T ss_pred ecCChhcccHhh------ccCCcEEEEec
Confidence 99976432 232 89999888763
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.3e-06 Score=83.47 Aligned_cols=94 Identities=22% Similarity=0.365 Sum_probs=72.6
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
..+.| +|++|||+|.+|.+++..|+.. |.+|++.+|+..+ .+.+...|.... ...+..+.++++|+||.+
T Consensus 148 ~~l~g-~kvlViG~G~iG~~~a~~L~~~------Ga~V~v~~r~~~~-~~~~~~~G~~~~--~~~~l~~~l~~aDiVI~t 217 (296)
T PRK08306 148 ITIHG-SNVLVLGFGRTGMTLARTLKAL------GANVTVGARKSAH-LARITEMGLSPF--HLSELAEEVGKIDIIFNT 217 (296)
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEECCHHH-HHHHHHcCCeee--cHHHHHHHhCCCCEEEEC
Confidence 44678 9999999999999999999998 9999888887443 566667787631 123567889999999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
+|+... -++....|+++.+|++.+
T Consensus 218 ~p~~~i---~~~~l~~~~~g~vIIDla 241 (296)
T PRK08306 218 IPALVL---TKEVLSKMPPEALIIDLA 241 (296)
T ss_pred CChhhh---hHHHHHcCCCCcEEEEEc
Confidence 986432 245667889999988665
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.5e-06 Score=86.94 Aligned_cols=93 Identities=24% Similarity=0.235 Sum_probs=74.4
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
.+.| ++|+|||+|.+|..+|+.++.. |.+|++..+...+ ...|...|+. +.+.+|+++++|+||.++
T Consensus 192 ~l~G-k~VvViG~G~IG~~vA~~ak~~------Ga~ViV~d~dp~r-~~~A~~~G~~-----v~~leeal~~aDVVItaT 258 (406)
T TIGR00936 192 LIAG-KTVVVAGYGWCGKGIAMRARGM------GARVIVTEVDPIR-ALEAAMDGFR-----VMTMEEAAKIGDIFITAT 258 (406)
T ss_pred CCCc-CEEEEECCCHHHHHHHHHHhhC------cCEEEEEeCChhh-HHHHHhcCCE-----eCCHHHHHhcCCEEEECC
Confidence 4788 9999999999999999999988 9999887665443 4566778886 356788999999999988
Q ss_pred CCchHHHHHH-HHHhcCCCCcEEEEecCch
Q 014834 187 SDAAQADNYE-KIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 187 pd~~~~~Vl~-eI~~~lk~gaiLi~a~G~~ 215 (417)
.. ..+++ +....||+|.+|+.++.+.
T Consensus 259 G~---~~vI~~~~~~~mK~GailiN~G~~~ 285 (406)
T TIGR00936 259 GN---KDVIRGEHFENMKDGAIVANIGHFD 285 (406)
T ss_pred CC---HHHHHHHHHhcCCCCcEEEEECCCC
Confidence 74 44565 4778899999988666543
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=6.2e-06 Score=86.37 Aligned_cols=93 Identities=24% Similarity=0.235 Sum_probs=74.5
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
.+.| ++|+|||+|.+|..+|+.|+.. |.+|++.++...+ ...+...|+. +.+.+++++.+|+||.++
T Consensus 209 ~l~G-k~VlViG~G~IG~~vA~~lr~~------Ga~ViV~d~dp~r-a~~A~~~G~~-----v~~l~eal~~aDVVI~aT 275 (425)
T PRK05476 209 LIAG-KVVVVAGYGDVGKGCAQRLRGL------GARVIVTEVDPIC-ALQAAMDGFR-----VMTMEEAAELGDIFVTAT 275 (425)
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCCchh-hHHHHhcCCE-----ecCHHHHHhCCCEEEECC
Confidence 3688 9999999999999999999998 9999888776444 3455566876 357889999999999998
Q ss_pred CCchHHHHHH-HHHhcCCCCcEEEEecCch
Q 014834 187 SDAAQADNYE-KIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 187 pd~~~~~Vl~-eI~~~lk~gaiLi~a~G~~ 215 (417)
.. ..++. +....||+|.+++.++.+.
T Consensus 276 G~---~~vI~~~~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 276 GN---KDVITAEHMEAMKDGAILANIGHFD 302 (425)
T ss_pred CC---HHHHHHHHHhcCCCCCEEEEcCCCC
Confidence 64 33565 5778899999988777664
|
|
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.2e-05 Score=82.91 Aligned_cols=145 Identities=17% Similarity=0.164 Sum_probs=102.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcC----ceecCCCcCCHHhh---cCcCCEEEE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG----FTEENGTLGDIYET---ISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G----~~~~~~~~~s~~Ea---~~~ADIViL 184 (417)
..||+||+|.||..+|+|+.+. |+.|.|++|..++..+.-++.+ ++. ..+++|. ++.---|+|
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~------G~~VavyNRt~~ktd~f~~~~~~~k~i~~----~~sieefV~~Le~PRkI~l 73 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADH------GYTVAVYNRTTEKTDEFLAERAKGKNIVP----AYSIEEFVASLEKPRKILL 73 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhc------CceEEEEeCCHHHHHHHHHhCccCCCccc----cCcHHHHHHHhcCCceEEE
Confidence 4799999999999999999999 9999999999887766655544 332 4566664 567788999
Q ss_pred ccCCch-HHHHHHHHHhcCCCCcEEEEecCc----hhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCc
Q 014834 185 LISDAA-QADNYEKIFSCMKPNSILGLSHGF----LLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (417)
Q Consensus 185 avpd~~-~~~Vl~eI~~~lk~gaiLi~a~G~----~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv 259 (417)
+|+... +..++++++|+|.+|.+|++.+-- ++....+ .-.+++.||..--.+ |. +|.
T Consensus 74 MVkAG~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~e---L~~~Gi~FvG~GVSG-----------GE----eGA 135 (473)
T COG0362 74 MVKAGTPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKE---LSEKGILFVGMGVSG-----------GE----EGA 135 (473)
T ss_pred EEecCCcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHH---HHhcCCeEEeccccc-----------cc----ccc
Confidence 998753 457889999999999999987653 2322221 234577888532211 10 221
Q ss_pred ---eEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 260 ---NSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 260 ---~~liav~~dvsgea~e~a~~L~~alG~~ 287 (417)
|+ +-|.. +.++.+.+.-++..|-..
T Consensus 136 ~~GPS-iMpGG--~~eay~~v~pil~~IaAk 163 (473)
T COG0362 136 RHGPS-IMPGG--QKEAYELVAPILTKIAAK 163 (473)
T ss_pred ccCCC-cCCCC--CHHHHHHHHHHHHHHHhh
Confidence 22 33333 568999999999999764
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.4e-06 Score=78.80 Aligned_cols=95 Identities=22% Similarity=0.322 Sum_probs=60.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec--------------CC---CcCCHHh
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--------------NG---TLGDIYE 174 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~--------------~~---~~~s~~E 174 (417)
|||+|||+|-+|..+|..|.+. |++|+ +.+.++...+.. ..|..+. .+ ...+.++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~------G~~V~-g~D~~~~~v~~l-~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ 72 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEK------GHQVI-GVDIDEEKVEAL-NNGELPIYEPGLDELLKENVSAGRLRATTDIEE 72 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHT------TSEEE-EE-S-HHHHHHH-HTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHH
T ss_pred CEEEEECCCcchHHHHHHHHhC------CCEEE-EEeCChHHHHHH-hhccccccccchhhhhccccccccchhhhhhhh
Confidence 6999999999999999999999 99986 455444333322 2232110 00 1356788
Q ss_pred hcCcCCEEEEccCCch----------HHHHHHHHHhcCCCCcEEEEecCc
Q 014834 175 TISGSDLVLLLISDAA----------QADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 175 a~~~ADIViLavpd~~----------~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
+++++|++|+|+|... ..++++.|.++++++++|++-+=+
T Consensus 73 ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STv 122 (185)
T PF03721_consen 73 AIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTV 122 (185)
T ss_dssp HHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSS
T ss_pred hhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEE
Confidence 8999999999998321 345677899999999988866533
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=98.19 E-value=5.1e-05 Score=80.62 Aligned_cols=204 Identities=14% Similarity=0.071 Sum_probs=107.5
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec-------------CC---CcCCHHh
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-------------NG---TLGDIYE 174 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~-------------~~---~~~s~~E 174 (417)
|+||+|||+|.+|..+|..|.+. |.|++|+..+.. ....+...+ |.... ++ ...+..+
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~----g~g~~V~gvD~~-~~~v~~l~~-g~~~~~e~gl~ell~~~~~~~l~~t~~~~~ 74 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALK----CPDIEVVVVDIS-VPRIDAWNS-DQLPIYEPGLDEVVKQCRGKNLFFSTDVEK 74 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc----CCCCeEEEEECC-HHHHHHHHc-CCCccCCCCHHHHHHHhhcCCEEEEcCHHH
Confidence 58999999999999999999877 224677655543 322332211 11000 00 1345678
Q ss_pred hcCcCCEEEEccC-Cc--------------hHHHHHHHHHhcCCCCcEEEEec----CchhhhhhhcccCCCCCccE-EE
Q 014834 175 TISGSDLVLLLIS-DA--------------AQADNYEKIFSCMKPNSILGLSH----GFLLGHLQSIGLDFPKNIGV-IA 234 (417)
Q Consensus 175 a~~~ADIViLavp-d~--------------~~~~Vl~eI~~~lk~gaiLi~a~----G~~i~~~~~~~i~~~~dv~V-I~ 234 (417)
++++||++|+||| |. .+.++.++|.++++++++|++-+ |.+- .+......-.++.+| +.
T Consensus 75 ~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~-~~~~~l~~~~~g~~f~v~ 153 (473)
T PLN02353 75 HVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAE-AIEKILTHNSKGINFQIL 153 (473)
T ss_pred HHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHH-HHHHHHHhhCCCCCeEEE
Confidence 8999999999986 22 23456778999999999877544 4321 111100000112232 34
Q ss_pred eccC--CCchhHHHHHhhcccccCCCceEEE-eecCCCC-HHHHHHHHHHHHHhCC-Cceeccchhhhhhhhccccchhh
Q 014834 235 VCPK--GMGPSVRRLYVQGKEINGAGINSSF-AVHQDVD-GRATNVALGWSVALGS-PFTFATTLEQEYKSDIFGERGIL 309 (417)
Q Consensus 235 v~Pn--tpg~~vr~ly~~G~~~~G~Gv~~li-av~~dvs-gea~e~a~~L~~alG~-~~~iettf~~e~~~dl~ge~t~L 309 (417)
..|- .||..+++.+. .+-++ ....+.+ .++.+.+.++...+-. ..++.|+.+ +-+.-.+ .
T Consensus 154 ~~PErl~~G~a~~d~~~---------p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~-~AE~~K~-----~ 218 (473)
T PLN02353 154 SNPEFLAEGTAIEDLFK---------PDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLW-SAELSKL-----A 218 (473)
T ss_pred ECCCccCCCCcccccCC---------CCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHH-HHHHHHH-----H
Confidence 4452 23444333322 34432 3222222 4677888888887742 223333321 1121112 2
Q ss_pred hchHH----HHHHHHHHHHHHcCCCHHHHHH
Q 014834 310 LGAVH----GIVESLFRRFTENGMSEDLAYK 336 (417)
Q Consensus 310 ~G~~p----A~iea~~d~~v~~Gl~~e~A~~ 336 (417)
.++-- +|+..+.+.+-+.|++..+...
T Consensus 219 eN~~ra~~Iaf~NEla~lce~~giD~~eV~~ 249 (473)
T PLN02353 219 ANAFLAQRISSVNAMSALCEATGADVSQVSH 249 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 22222 2556666666666666655443
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=6.2e-05 Score=75.15 Aligned_cols=152 Identities=20% Similarity=0.220 Sum_probs=93.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHH-HcCceec-CCC--c----CCHHhhcCcCCEEE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEE-NGT--L----GDIYETISGSDLVL 183 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~-~~G~~~~-~~~--~----~s~~Ea~~~ADIVi 183 (417)
+||+|||+|.||.-+|..|.+. |.+|.+..|..+. .+.-+ +.|+... ++. . ....+.....|+||
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~------G~~V~lv~r~~~~-~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~vi 75 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA------GLPVRLILRDRQR-LAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLL 75 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC------CCCeEEEEechHH-HHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEE
Confidence 6899999999999999999998 9998887775332 33222 3354321 111 0 01112235689999
Q ss_pred EccCCchHHHHHHHHHhcCCCCcEE-EEecCchh-hhhhhcccCCCCCccEE------EeccCCCchhHHHHHhhccccc
Q 014834 184 LLISDAAQADNYEKIFSCMKPNSIL-GLSHGFLL-GHLQSIGLDFPKNIGVI------AVCPKGMGPSVRRLYVQGKEIN 255 (417)
Q Consensus 184 Lavpd~~~~~Vl~eI~~~lk~gaiL-i~a~G~~i-~~~~~~~i~~~~dv~VI------~v~Pntpg~~vr~ly~~G~~~~ 255 (417)
++||-....+.++.+.+++.++++| .+--|+.. ..+.. .+|++ .++ ......|+.+. ..
T Consensus 76 v~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~---~~~~~-~v~~g~~~~ga~~~~pg~v~---------~~ 142 (305)
T PRK05708 76 LACKAYDAEPAVASLAHRLAPGAELLLLQNGLGSQDAVAA---RVPHA-RCIFASSTEGAFRDGDWRVV---------FA 142 (305)
T ss_pred EECCHHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHH---hCCCC-cEEEEEeeeceecCCCCEEE---------Ee
Confidence 9999998889999999999998865 47778864 33333 34543 232 23445566551 11
Q ss_pred CCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 256 GAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 256 G~Gv~~liav~~dvsgea~e~a~~L~~alG~~ 287 (417)
|.|... +... +++..+...+++...|..
T Consensus 143 ~~g~~~-~G~~---~~~~~~~l~~~l~~ag~~ 170 (305)
T PRK05708 143 GHGFTW-LGDP---RNPTAPAWLDDLREAGIP 170 (305)
T ss_pred ceEEEE-EcCC---CCcchHHHHHHHHhcCCC
Confidence 333322 3322 223344455677776754
|
|
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00024 Score=71.66 Aligned_cols=205 Identities=13% Similarity=0.032 Sum_probs=129.3
Q ss_pred hHHHHHHHHHhhhhhhcCCcEEEEEecCChh------h-----------HHHHHHcCceec-------CC--CcC--CHH
Q 014834 122 QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR------S-----------FAEARAAGFTEE-------NG--TLG--DIY 173 (417)
Q Consensus 122 mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~------s-----------~~~A~~~G~~~~-------~~--~~~--s~~ 173 (417)
||..||..+..+ |++|.+.+...+. . ++.+.+.|.... +. ... +..
T Consensus 1 MG~giA~~~a~~------G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 74 (314)
T PRK08269 1 MGQGIALAFAFA------GHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAA 74 (314)
T ss_pred CcHHHHHHHHhC------CCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchH
Confidence 899999999998 9999988876521 1 111222332110 00 011 256
Q ss_pred hhcCcCCEEEEccCCchHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhh
Q 014834 174 ETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQ 250 (417)
Q Consensus 174 Ea~~~ADIViLavpd~~~~--~Vl~eI~~~lk~gaiLi-~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~ 250 (417)
+++++||+||-++|..... +++.+|.+.++|+++|. -++++.+..+.. ..+..-+++.+|+--|.+.+
T Consensus 75 ~a~~~aD~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~---~~~~p~r~~g~Hf~~Pp~~~------ 145 (314)
T PRK08269 75 DALADADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQR---HVAHPERFLNAHWLNPAYLM------ 145 (314)
T ss_pred HHhccCCEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHh---hcCCcccEEEEecCCccccC------
Confidence 8899999999999987764 58889999999999875 556677766654 22222369999998887662
Q ss_pred cccccCCCceEE-EeecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHHHHHHHHHHHHHcCC
Q 014834 251 GKEINGAGINSS-FAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGM 329 (417)
Q Consensus 251 G~~~~G~Gv~~l-iav~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA~iea~~d~~v~~Gl 329 (417)
+.+ +..+...+.+..+.+..++..+|... +.. .+.. .+ ++.....+++.-++..+.+.|.
T Consensus 146 ---------~lvEVv~g~~t~~e~~~~~~~ll~~lGk~~-v~v---~d~~-----Gf-i~nri~~~~l~EAl~l~e~g~~ 206 (314)
T PRK08269 146 ---------PLVEVSPSDATDPAVVDRLAALLERIGKVP-VVC---GPSP-----GY-IVPRIQALAMNEAARMVEEGVA 206 (314)
T ss_pred ---------ceEEEeCCCCCCHHHHHHHHHHHHHcCCcE-EEe---cCCC-----Cc-chHHHHHHHHHHHHHHHHhCCC
Confidence 221 33455677899999999999999752 111 0111 11 2334444445555566677778
Q ss_pred CHHHHHHHHHHHHH-----HHHHHHHHHhcHHHHHh
Q 014834 330 SEDLAYKNTVECIT-----GIISKIISTQGMLAVYN 360 (417)
Q Consensus 330 ~~e~A~~~~~q~~~-----~g~~~li~e~G~~~l~~ 360 (417)
++++.........- .|.-+++-..|++..++
T Consensus 207 ~~e~iD~a~~~g~G~~~~~~Gpf~~~D~~Gld~~~~ 242 (314)
T PRK08269 207 SAEDIDKAIRTGFGLRFAVLGLLEFIDWGGCDILYY 242 (314)
T ss_pred CHHHHHHHHHhCCCCCccCcCHHHHHHhhhHHHHHH
Confidence 99887765543311 15556666666644443
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=98.16 E-value=1e-05 Score=85.63 Aligned_cols=93 Identities=17% Similarity=0.172 Sum_probs=71.8
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
-+.| ++|+|||+|.+|..+|+.++.. |.+|++..+...+ ...+...|+.. .+.+++++.+|+|+.++
T Consensus 251 ~LaG-KtVvViGyG~IGr~vA~~aka~------Ga~VIV~e~dp~r-~~eA~~~G~~v-----v~leEal~~ADVVI~tT 317 (477)
T PLN02494 251 MIAG-KVAVICGYGDVGKGCAAAMKAA------GARVIVTEIDPIC-ALQALMEGYQV-----LTLEDVVSEADIFVTTT 317 (477)
T ss_pred ccCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchh-hHHHHhcCCee-----ccHHHHHhhCCEEEECC
Confidence 3788 9999999999999999999988 9998877665333 34667788873 47889999999999877
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
..... +..+.+..||+|.+|+.++-+
T Consensus 318 Gt~~v--I~~e~L~~MK~GAiLiNvGr~ 343 (477)
T PLN02494 318 GNKDI--IMVDHMRKMKNNAIVCNIGHF 343 (477)
T ss_pred CCccc--hHHHHHhcCCCCCEEEEcCCC
Confidence 65322 224667789999998865543
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=98.16 E-value=1e-05 Score=81.16 Aligned_cols=96 Identities=19% Similarity=0.216 Sum_probs=69.8
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCC-cEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G-~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
+.| ++|+|||+|.||..+++.|+.. | .+|++.+|+.++..+.+.+.|.... ...+..+++.++|+||.++
T Consensus 176 l~~-~~V~ViGaG~iG~~~a~~L~~~------g~~~V~v~~r~~~ra~~la~~~g~~~~--~~~~~~~~l~~aDvVi~at 246 (311)
T cd05213 176 LKG-KKVLVIGAGEMGELAAKHLAAK------GVAEITIANRTYERAEELAKELGGNAV--PLDELLELLNEADVVISAT 246 (311)
T ss_pred ccC-CEEEEECcHHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHcCCeEE--eHHHHHHHHhcCCEEEECC
Confidence 578 9999999999999999999986 5 4788888876666678888776421 0234667889999999999
Q ss_pred CCchHHHHHHHHHhcC-CCCcEEEEec
Q 014834 187 SDAAQADNYEKIFSCM-KPNSILGLSH 212 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~l-k~gaiLi~a~ 212 (417)
+.....+++..+.... +++.++++.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~viDla 273 (311)
T cd05213 247 GAPHYAKIVERAMKKRSGKPRLIVDLA 273 (311)
T ss_pred CCCchHHHHHHHHhhCCCCCeEEEEeC
Confidence 9776655555543322 2455666544
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00011 Score=73.82 Aligned_cols=154 Identities=18% Similarity=0.238 Sum_probs=97.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCC--------cCCHHhhcCcCCEEE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT--------LGDIYETISGSDLVL 183 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~--------~~s~~Ea~~~ADIVi 183 (417)
+||.|||+|.||.-++..|.+. |.+|.+..|.. ..+.-++.|....+.. ..+..+....+|+||
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~------g~~V~~~~R~~--~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlvi 72 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKA------GHDVTLLVRSR--RLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVI 72 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhC------CCeEEEEecHH--HHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEE
Confidence 6899999999999999999999 87777776652 2455566676543211 112235566899999
Q ss_pred EccCCchHHHHHHHHHhcCCCCcEEE-EecCchh-hhhhhcccCCCCCccEEE-ecc-----CCCchhHHHHHhhccccc
Q 014834 184 LLISDAAQADNYEKIFSCMKPNSILG-LSHGFLL-GHLQSIGLDFPKNIGVIA-VCP-----KGMGPSVRRLYVQGKEIN 255 (417)
Q Consensus 184 Lavpd~~~~~Vl~eI~~~lk~gaiLi-~a~G~~i-~~~~~~~i~~~~dv~VI~-v~P-----ntpg~~vr~ly~~G~~~~ 255 (417)
+++|-.+..++++.+.+.+++.+.|+ +--|... +.+.. .+|.. +++. +.+ ++|+.+. ..
T Consensus 73 v~vKa~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~---~~~~~-~il~G~~~~~a~~~~~g~v~---------~~ 139 (307)
T COG1893 73 VTVKAYQLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRK---ILPKE-TVLGGVTTHGAVREGPGHVV---------HT 139 (307)
T ss_pred EEeccccHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHH---hCCcc-eEEEEEeeeeeEecCCceEE---------Ee
Confidence 99999999999999999999998554 6668753 33332 44554 3332 333 3344431 11
Q ss_pred CCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 256 GAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 256 G~Gv~~liav~~dvsgea~e~a~~L~~alG~~ 287 (417)
|.|-.. +........+..+...++|...|..
T Consensus 140 g~g~~~-ig~~~~~~~~~~~~i~~~~~~a~~~ 170 (307)
T COG1893 140 GLGDTV-IGELRGGRDELVKALAELFKEAGLE 170 (307)
T ss_pred cCCcEE-EccCCCCchHHHHHHHHHHHhCCCC
Confidence 334444 2222221224555566667777765
|
|
| >COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00017 Score=69.64 Aligned_cols=179 Identities=16% Similarity=0.180 Sum_probs=129.8
Q ss_pred HHcCceecCCCcCCHHhhcCcCCEEEEccCC-chHHHHHHHHHhcCCCCcEEEEecCchhhhhhh-cccCCCCCccEEEe
Q 014834 158 RAAGFTEENGTLGDIYETISGSDLVLLLISD-AAQADNYEKIFSCMKPNSILGLSHGFLLGHLQS-IGLDFPKNIGVIAV 235 (417)
Q Consensus 158 ~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd-~~~~~Vl~eI~~~lk~gaiLi~a~G~~i~~~~~-~~i~~~~dv~VI~v 235 (417)
++.|+.+ +.+-.|+++++|+||.=.|- ..|.++++++...+++|++|.++.-+....+.. ..-.-+++.+|-.-
T Consensus 123 ed~g~~v----ttddreavedad~iitwlpkg~~qpdiikkfiddipegaivthactipttkf~kifed~gredlnvtsy 198 (343)
T COG4074 123 EDMGIVV----TTDDREAVEDADMIITWLPKGGVQPDIIKKFIDDIPEGAIVTHACTIPTTKFKKIFEDMGREDLNVTSY 198 (343)
T ss_pred HHceeEE----ecCcHhhhcCCCeEEEeccCCCCCccHHHHHHhcCCCCceEeeecccchHHHHHHHHHhCccccceecc
Confidence 3467776 67788999999999998885 567899999999999999999888764322111 00122568899999
Q ss_pred ccCCCchhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHH
Q 014834 236 CPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHG 315 (417)
Q Consensus 236 ~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA 315 (417)
||-+ .+.+ +|--+ ++ +..+++++.+..-+|..-.-+. .| ..+-.|+|-++-.|..+.+
T Consensus 199 hpg~-vpem------------kgqvy-ia-egyaseeavn~lyelg~karg~-af------k~pa~llgpvcdmcsavta 256 (343)
T COG4074 199 HPGT-VPEM------------KGQVY-IA-EGYASEEAVNALYELGEKARGL-AF------KVPAYLLGPVCDMCSAVTA 256 (343)
T ss_pred CCCC-Cccc------------cCcEE-Ee-cccccHHHHHHHHHHHHHhhcc-cc------cCcHHhhchHHHHHHHHHH
Confidence 9944 3332 23322 44 7788888888777766544322 22 2345578888888888888
Q ss_pred HHHHHHHH---HH--HcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhccc
Q 014834 316 IVESLFRR---FT--ENGMSEDLAYKNTVECITGIISKIISTQGMLAVYNSFS 363 (417)
Q Consensus 316 ~iea~~d~---~v--~~Gl~~e~A~~~~~q~~~~g~~~li~e~G~~~l~~~vs 363 (417)
++-+..-. +| -.|-|.+-|...+.+.+. .+++++.+.|++.|-+.+.
T Consensus 257 ivyagll~yrdavt~ilgapadfaqmma~eal~-qi~~lmee~gidkmeeald 308 (343)
T COG4074 257 IVYAGLLTYRDAVTDILGAPADFAQMMAVEALQ-QIAKLMEEEGIDKMEEALD 308 (343)
T ss_pred HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH-HHHHHHHHhhhhHHHhhcC
Confidence 76554332 22 369999999999999998 9999999999999998876
|
|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.5e-05 Score=67.54 Aligned_cols=80 Identities=26% Similarity=0.314 Sum_probs=61.5
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEE-EEecCChhhHHHHHHcCceecCCCcCCHHhhcC--cCCEEEEccCCc
Q 014834 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDA 189 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~--~ADIViLavpd~ 189 (417)
||||||+|.+|......+++. ..+.++. +.++..++....+++.|+.. ..+.+++++ +.|+|++++|+.
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~----~~~~~v~~v~d~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~D~V~I~tp~~ 73 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRS----SPDFEVVAVCDPDPERAEAFAEKYGIPV----YTDLEELLADEDVDAVIIATPPS 73 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHT----TTTEEEEEEECSSHHHHHHHHHHTTSEE----ESSHHHHHHHTTESEEEEESSGG
T ss_pred EEEEECCcHHHHHHHHHHHhc----CCCcEEEEEEeCCHHHHHHHHHHhcccc----hhHHHHHHHhhcCCEEEEecCCc
Confidence 799999999999999998876 1144554 33444334445567788885 788999887 789999999999
Q ss_pred hHHHHHHHHHh
Q 014834 190 AQADNYEKIFS 200 (417)
Q Consensus 190 ~~~~Vl~eI~~ 200 (417)
.+.++......
T Consensus 74 ~h~~~~~~~l~ 84 (120)
T PF01408_consen 74 SHAEIAKKALE 84 (120)
T ss_dssp GHHHHHHHHHH
T ss_pred chHHHHHHHHH
Confidence 99988876554
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=98.11 E-value=2e-05 Score=82.28 Aligned_cols=93 Identities=23% Similarity=0.248 Sum_probs=74.0
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
..+.| ++|+|||+|.+|..+++.++.. |.+|++.++. +.....|.+.|+.. .+.+++++.+|+||.+
T Consensus 198 ~~l~G-ktVvViG~G~IG~~va~~ak~~------Ga~ViV~d~d-~~R~~~A~~~G~~~-----~~~~e~v~~aDVVI~a 264 (413)
T cd00401 198 VMIAG-KVAVVAGYGDVGKGCAQSLRGQ------GARVIVTEVD-PICALQAAMEGYEV-----MTMEEAVKEGDIFVTT 264 (413)
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEECC-hhhHHHHHhcCCEE-----ccHHHHHcCCCEEEEC
Confidence 34678 9999999999999999999998 9998886655 34467888899863 4677889999999999
Q ss_pred cCCchHHHHHH-HHHhcCCCCcEEEEecCc
Q 014834 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 186 vpd~~~~~Vl~-eI~~~lk~gaiLi~a~G~ 214 (417)
+... .++. +....|++|.+|+.++.+
T Consensus 265 tG~~---~~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 265 TGNK---DIITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred CCCH---HHHHHHHHhcCCCCcEEEEeCCC
Confidence 8753 3454 457889999988766543
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.4e-05 Score=70.70 Aligned_cols=95 Identities=19% Similarity=0.250 Sum_probs=71.1
Q ss_pred EEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCC----------cCCHHhhcCcCCEEE
Q 014834 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT----------LGDIYETISGSDLVL 183 (417)
Q Consensus 114 IgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~----------~~s~~Ea~~~ADIVi 183 (417)
|+|||.|.||.-+|..|... |.+|.+..|.. ..+.-++.|+...+.. ..+..+.....|+||
T Consensus 1 I~I~G~GaiG~~~a~~L~~~------g~~V~l~~r~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi 72 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA------GHDVTLVSRSP--RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVI 72 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT------TCEEEEEESHH--HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEE
T ss_pred CEEECcCHHHHHHHHHHHHC------CCceEEEEccc--cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEE
Confidence 78999999999999999988 99998877753 3444556676542111 111124567899999
Q ss_pred EccCCchHHHHHHHHHhcCCCCcE-EEEecCchh
Q 014834 184 LLISDAAQADNYEKIFSCMKPNSI-LGLSHGFLL 216 (417)
Q Consensus 184 Lavpd~~~~~Vl~eI~~~lk~gai-Li~a~G~~i 216 (417)
+++|..+..++++.+.+++.+++. |++--|+..
T Consensus 73 v~vKa~~~~~~l~~l~~~~~~~t~iv~~qNG~g~ 106 (151)
T PF02558_consen 73 VAVKAYQLEQALQSLKPYLDPNTTIVSLQNGMGN 106 (151)
T ss_dssp E-SSGGGHHHHHHHHCTGEETTEEEEEESSSSSH
T ss_pred EEecccchHHHHHHHhhccCCCcEEEEEeCCCCc
Confidence 999999999999999999999865 456678863
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.07 E-value=7.9e-06 Score=82.06 Aligned_cols=89 Identities=18% Similarity=0.143 Sum_probs=63.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHc---C--ceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---G--FTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~---G--~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
++|+|||+|.||..+++.+... ....+|.|++|..++..+.+.+. | +.. +.+.++++++||+|+.++
T Consensus 126 ~~v~iiG~G~~a~~~~~al~~~----~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~----~~~~~~av~~aDIVi~aT 197 (314)
T PRK06141 126 SRLLVVGTGRLASLLALAHASV----RPIKQVRVWGRDPAKAEALAAELRAQGFDAEV----VTDLEAAVRQADIISCAT 197 (314)
T ss_pred ceEEEECCcHHHHHHHHHHHhc----CCCCEEEEEcCCHHHHHHHHHHHHhcCCceEE----eCCHHHHHhcCCEEEEee
Confidence 8999999999999999876652 00347889999866666666553 4 333 567889999999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecC
Q 014834 187 SDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiLi~a~G 213 (417)
|.. ..++.. ..++||+.| ++.|
T Consensus 198 ~s~--~pvl~~--~~l~~g~~i-~~ig 219 (314)
T PRK06141 198 LST--EPLVRG--EWLKPGTHL-DLVG 219 (314)
T ss_pred CCC--CCEecH--HHcCCCCEE-EeeC
Confidence 865 233321 457889844 4444
|
|
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.2e-05 Score=67.50 Aligned_cols=97 Identities=12% Similarity=0.031 Sum_probs=60.9
Q ss_pred EEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEE-ecCChhhHHHHHHcC-ceecCCCcCCHHhh-cCcCCEEEEccCC
Q 014834 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVG-LRKGSRSFAEARAAG-FTEENGTLGDIYET-ISGSDLVLLLISD 188 (417)
Q Consensus 113 kIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg-~r~~s~s~~~A~~~G-~~~~~~~~~s~~Ea-~~~ADIViLavpd 188 (417)
||+|||+ |.+|..++..|.+. .++++... .++.++....+...+ +....-...+..+. ..++|+||+|+|+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~-----~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~ 75 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEH-----PDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPH 75 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcC-----CCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCc
Confidence 6899995 89999999999884 15555433 232221111122222 11000000111111 2589999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 189 AAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 189 ~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
..+.+++..+.+.+++|++|++++|.
T Consensus 76 ~~~~~~~~~~~~~~~~g~~viD~s~~ 101 (122)
T smart00859 76 GVSKEIAPLLPKAAEAGVKVIDLSSA 101 (122)
T ss_pred HHHHHHHHHHHhhhcCCCEEEECCcc
Confidence 99999887667778999999999886
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.5e-05 Score=79.89 Aligned_cols=75 Identities=17% Similarity=0.184 Sum_probs=59.8
Q ss_pred hccCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~gmkkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
.++| |+|+||| .|.||.+||.+|.+. |+.|.+++.+. .+++|++++||+||.+
T Consensus 155 ~~~G-k~V~viGrs~~mG~PmA~~L~~~------g~tVtv~~~rT-------------------~~l~e~~~~ADIVIsa 208 (296)
T PRK14188 155 DLSG-LNAVVIGRSNLVGKPMAQLLLAA------NATVTIAHSRT-------------------RDLPAVCRRADILVAA 208 (296)
T ss_pred CCCC-CEEEEEcCCcchHHHHHHHHHhC------CCEEEEECCCC-------------------CCHHHHHhcCCEEEEe
Confidence 5889 9999999 999999999999999 99998874221 1356888999999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
++.... +++. ++++|++|++++
T Consensus 209 vg~~~~---v~~~--~lk~GavVIDvG 230 (296)
T PRK14188 209 VGRPEM---VKGD--WIKPGATVIDVG 230 (296)
T ss_pred cCChhh---cchh--eecCCCEEEEcC
Confidence 998653 3221 289999888763
|
|
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=97.96 E-value=2e-05 Score=79.64 Aligned_cols=94 Identities=17% Similarity=0.066 Sum_probs=65.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHH---HcCc--eecCCCcCCHHhhcCcCCEEEEc
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR---AAGF--TEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~---~~G~--~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
-+++||||+|.||..+++.|... ....+|.|++|..++..+.+. +.|+ .. +.+.+|++++||+|+.|
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~----~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~----~~~~~eav~~aDiVita 199 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRV----FDLEEVSVYCRTPSTREKFALRASDYEVPVRA----ATDPREAVEGCDILVTT 199 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc----CCCCEEEEECCCHHHHHHHHHHHHhhCCcEEE----eCCHHHHhccCCEEEEe
Confidence 37999999999999999888763 013378888887665444433 3453 33 57899999999999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEecCchh
Q 014834 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFLL 216 (417)
Q Consensus 186 vpd~~~~~Vl~eI~~~lk~gaiLi~a~G~~i 216 (417)
||... .++. ...++||+.|.-.+....
T Consensus 200 T~s~~--P~~~--~~~l~~g~~v~~vGs~~p 226 (325)
T TIGR02371 200 TPSRK--PVVK--ADWVSEGTHINAIGADAP 226 (325)
T ss_pred cCCCC--cEec--HHHcCCCCEEEecCCCCc
Confidence 98642 2232 234689998775655443
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.6e-05 Score=73.61 Aligned_cols=72 Identities=21% Similarity=0.160 Sum_probs=52.7
Q ss_pred hhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcC-cCCEEE
Q 014834 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVL 183 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~-~ADIVi 183 (417)
...++| |+|+|+|+|+||.++|+.|.+. |.+|++.+++..+..+.+...|... .+.+++.. ++|+++
T Consensus 23 ~~~l~g-k~v~I~G~G~vG~~~A~~L~~~------G~~Vvv~D~~~~~~~~~~~~~g~~~-----v~~~~l~~~~~Dv~v 90 (200)
T cd01075 23 TDSLEG-KTVAVQGLGKVGYKLAEHLLEE------GAKLIVADINEEAVARAAELFGATV-----VAPEEIYSVDADVFA 90 (200)
T ss_pred CCCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHcCCEE-----EcchhhccccCCEEE
Confidence 366889 9999999999999999999999 9999877665443334444446553 24455554 799999
Q ss_pred EccCC
Q 014834 184 LLISD 188 (417)
Q Consensus 184 Lavpd 188 (417)
.+..-
T Consensus 91 p~A~~ 95 (200)
T cd01075 91 PCALG 95 (200)
T ss_pred ecccc
Confidence 66553
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.4e-05 Score=70.67 Aligned_cols=77 Identities=23% Similarity=0.268 Sum_probs=60.5
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcC---ceecCCCcCCHHhhcCcCCE
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG---FTEENGTLGDIYETISGSDL 181 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G---~~~~~~~~~s~~Ea~~~ADI 181 (417)
..++| +++.|||.|-+|.+++..|.+. |. +|.+.+|+.++..+.+...+ +.. -...+..+.+.++|+
T Consensus 8 ~~l~~-~~vlviGaGg~ar~v~~~L~~~------g~~~i~i~nRt~~ra~~l~~~~~~~~~~~--~~~~~~~~~~~~~Di 78 (135)
T PF01488_consen 8 GDLKG-KRVLVIGAGGAARAVAAALAAL------GAKEITIVNRTPERAEALAEEFGGVNIEA--IPLEDLEEALQEADI 78 (135)
T ss_dssp STGTT-SEEEEESSSHHHHHHHHHHHHT------TSSEEEEEESSHHHHHHHHHHHTGCSEEE--EEGGGHCHHHHTESE
T ss_pred CCcCC-CEEEEECCHHHHHHHHHHHHHc------CCCEEEEEECCHHHHHHHHHHcCccccce--eeHHHHHHHHhhCCe
Confidence 46788 9999999999999999999999 88 49999998777777777762 211 014456677899999
Q ss_pred EEEccCCchH
Q 014834 182 VLLLISDAAQ 191 (417)
Q Consensus 182 ViLavpd~~~ 191 (417)
||.+||-...
T Consensus 79 vI~aT~~~~~ 88 (135)
T PF01488_consen 79 VINATPSGMP 88 (135)
T ss_dssp EEE-SSTTST
T ss_pred EEEecCCCCc
Confidence 9999996654
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=3.9e-05 Score=76.54 Aligned_cols=75 Identities=20% Similarity=0.238 Sum_probs=60.2
Q ss_pred hhccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| |+|+|||. |.||.+||..|.+. |..|+++.. + +.++++.+++||+||.
T Consensus 154 i~l~G-k~v~vIG~S~ivG~Pla~lL~~~------gatVtv~~s---~----------------t~~l~~~~~~ADIVI~ 207 (284)
T PRK14179 154 VELEG-KHAVVIGRSNIVGKPMAQLLLDK------NATVTLTHS---R----------------TRNLAEVARKADILVV 207 (284)
T ss_pred CCCCC-CEEEEECCCCcCcHHHHHHHHHC------CCEEEEECC---C----------------CCCHHHHHhhCCEEEE
Confidence 45899 99999999 99999999999999 999887621 1 2357888999999999
Q ss_pred ccCCchH-HHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQ-ADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~-~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
+++.... ... ++++|++|++++
T Consensus 208 avg~~~~v~~~------~ik~GavVIDvg 230 (284)
T PRK14179 208 AIGRGHFVTKE------FVKEGAVVIDVG 230 (284)
T ss_pred ecCccccCCHH------HccCCcEEEEec
Confidence 9997554 222 389999988763
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.85 E-value=3.2e-05 Score=80.70 Aligned_cols=74 Identities=23% Similarity=0.314 Sum_probs=58.2
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
+.| ++|+|||+|.||..+++.|+.. |. +|++.+|+..+..+.+.+.|.... ...+..+++.++|+||.+|
T Consensus 180 ~~~-~~vlViGaG~iG~~~a~~L~~~------G~~~V~v~~r~~~ra~~la~~~g~~~~--~~~~~~~~l~~aDvVI~aT 250 (423)
T PRK00045 180 LSG-KKVLVIGAGEMGELVAKHLAEK------GVRKITVANRTLERAEELAEEFGGEAI--PLDELPEALAEADIVISST 250 (423)
T ss_pred ccC-CEEEEECchHHHHHHHHHHHHC------CCCeEEEEeCCHHHHHHHHHHcCCcEe--eHHHHHHHhccCCEEEECC
Confidence 678 9999999999999999999988 87 788888876666667777764320 0235667889999999999
Q ss_pred CCch
Q 014834 187 SDAA 190 (417)
Q Consensus 187 pd~~ 190 (417)
+...
T Consensus 251 ~s~~ 254 (423)
T PRK00045 251 GAPH 254 (423)
T ss_pred CCCC
Confidence 8543
|
|
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00016 Score=71.05 Aligned_cols=91 Identities=22% Similarity=0.229 Sum_probs=57.8
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHc--CceecCCCcCCHHhhcCcCCEEEEccCC
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEENGTLGDIYETISGSDLVLLLISD 188 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~--G~~~~~~~~~s~~Ea~~~ADIViLavpd 188 (417)
|+||||||+|+||..+++.|.+. .++++......+....+..... +... +.+.+++..+.|+|+.|+|+
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~-----~~~~l~~v~~~~~~~~~~~~~~~~~~~~----~~d~~~l~~~~DvVve~t~~ 71 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHD-----PDLRVDWVIVPEHSIDAVRRALGEAVRV----VSSVDALPQRPDLVVECAGH 71 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhC-----CCceEEEEEEcCCCHHHHhhhhccCCee----eCCHHHhccCCCEEEECCCH
Confidence 57999999999999999999875 1344433322211111112222 4443 56787775569999999999
Q ss_pred chHHHHHHHHHhcCCCCc-EEEEecC
Q 014834 189 AAQADNYEKIFSCMKPNS-ILGLSHG 213 (417)
Q Consensus 189 ~~~~~Vl~eI~~~lk~ga-iLi~a~G 213 (417)
..+.++..++. +.|+ +++...|
T Consensus 72 ~~~~e~~~~aL---~aGk~Vvi~s~~ 94 (265)
T PRK13303 72 AALKEHVVPIL---KAGIDCAVISVG 94 (265)
T ss_pred HHHHHHHHHHH---HcCCCEEEeChH
Confidence 88877766554 3455 4444444
|
|
| >COG5495 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00044 Score=67.17 Aligned_cols=219 Identities=11% Similarity=0.056 Sum_probs=131.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHH----HHcCceecCCCcCCHHhhcCcCCEEEEccC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA----RAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A----~~~G~~~~~~~~~s~~Ea~~~ADIViLavp 187 (417)
..++|||.|..|.+....--+- ++. ++. ..+++.+.+ +..+.. ..+.+...+-.+++|.-+|
T Consensus 11 v~~~~vgtgrl~ra~~~ra~h~------~~~--cs~-i~srS~~~a~~LaE~~~a~-----p~d~~~~ael~~~vfv~vp 76 (289)
T COG5495 11 VVVGIVGTGRLGRAALLRADHV------VVA--CSA-ISSRSRDRAQNLAETYVAP-----PLDVAKSAELLLLVFVDVP 76 (289)
T ss_pred eEEEEeecchHHHHHHHHhcch------hee--ehh-hhhcCHHHHhhchhccCCC-----ccchhhChhhhceEEecch
Confidence 5799999999999944432222 222 221 112333333 334433 2345555666788888888
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCC-CCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeec
Q 014834 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFP-KNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~-~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~ 266 (417)
|..+.++.... ..+||++|++++|++-..+-. ... .+.--..+||+.......+--++- ++--..++ .
T Consensus 77 d~~~s~vaa~~--~~rpg~iv~HcSga~~~~il~---~~gr~g~~~asiHP~f~Fsgl~edl~rl-----~d~~~~i~-e 145 (289)
T COG5495 77 DALYSGVAATS--LNRPGTIVAHCSGANGSGILA---PLGRQGCIPASIHPAFSFSGLDEDLSRL-----KDTIFGIT-E 145 (289)
T ss_pred HHHHHHHHHhc--ccCCCeEEEEccCCCchhhhh---hhhhcCCcceeecccccccCCHHHHHhC-----cccEEEee-c
Confidence 87555554332 347999999999996432211 111 233345799999888766555543 22222222 3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCc-eeccchhhhhhhhccccchhh-hchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 014834 267 QDVDGRATNVALGWSVALGSPF-TFATTLEQEYKSDIFGERGIL-LGAVHGIVESLFRRFTENGMSEDLAYKNTVECITG 344 (417)
Q Consensus 267 ~dvsgea~e~a~~L~~alG~~~-~iettf~~e~~~dl~ge~t~L-~G~~pA~iea~~d~~v~~Gl~~e~A~~~~~q~~~~ 344 (417)
.| .....+++.|+.-+|+.. .+. +....+||..... ++.+.+...-..+....+|.++-++.-+ +--+.+
T Consensus 146 aD--~~g~ai~q~la~emgg~~f~V~-----~~~r~lYHaaa~~asnf~v~~l~~a~~i~~aag~Dq~e~iv~-~~pL~~ 217 (289)
T COG5495 146 AD--DVGYAIVQSLALEMGGEPFCVR-----EEARILYHAAAVHASNFIVTVLADALEIYRAAGDDQPELIVE-VGPLAR 217 (289)
T ss_pred cc--ccccHHHHHHHHHhCCCceeec-----hhHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCCcceeee-ehHHHH
Confidence 33 346677889999999974 332 4566789988766 4456666666778889999999877765 222334
Q ss_pred HHHHHHHHhcHH-HHHhccc
Q 014834 345 IISKIISTQGML-AVYNSFS 363 (417)
Q Consensus 345 g~~~li~e~G~~-~l~~~vs 363 (417)
+..+-+++.|.. .|---|+
T Consensus 218 g~~~n~~qrg~a~aLTgpVa 237 (289)
T COG5495 218 GALENTLQRGQACALTGPVA 237 (289)
T ss_pred HHHHHHHHhhhhhcccCCcc
Confidence 666666666663 4433333
|
|
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.76 E-value=7.3e-05 Score=74.93 Aligned_cols=92 Identities=22% Similarity=0.173 Sum_probs=67.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHc---CceecCCCcCCHHhhcCcCCEEEEccC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~---G~~~~~~~~~s~~Ea~~~ADIViLavp 187 (417)
++|+|||+|.||..++..+.... ++ +|.+++|..++..+.+.+. ++... +.+.++++.++|+|+.+||
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~~-----~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~---~~~~~~av~~aDiVitaT~ 197 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAGL-----PVRRVWVRGRTAASAAAFCAHARALGPTAE---PLDGEAIPEAVDLVVTATT 197 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHhC-----CCCEEEEEcCCHHHHHHHHHHHHhcCCeeE---ECCHHHHhhcCCEEEEccC
Confidence 89999999999999999997530 43 6888888766666666554 33321 3578899999999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecCchh
Q 014834 188 DAAQADNYEKIFSCMKPNSILGLSHGFLL 216 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~gaiLi~a~G~~i 216 (417)
... .++. ..++||+.|.-.+....
T Consensus 198 s~~--Pl~~---~~~~~g~hi~~iGs~~p 221 (304)
T PRK07340 198 SRT--PVYP---EAARAGRLVVAVGAFTP 221 (304)
T ss_pred CCC--ceeC---ccCCCCCEEEecCCCCC
Confidence 764 3343 24789998776665543
|
|
| >KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00014 Score=70.47 Aligned_cols=153 Identities=16% Similarity=0.208 Sum_probs=102.8
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH-----------cCcee-cC------------
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTE-EN------------ 166 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~-----------~G~~~-~~------------ 166 (417)
++.|+|||.|.||..+|+--..+ |++|++.+++.. ...+|.+ .+... ..
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~s------g~~V~l~d~~~~-aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~r 83 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATS------GLNVWLVDANED-ALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDR 83 (298)
T ss_pred ccceEEEcccccchhHHHHHHhc------CCceEEecCCHH-HHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHH
Confidence 48899999999999999999888 999988876533 2222222 11110 00
Q ss_pred -CCcCCHHhhcCcCCEEEEccCCchH--HHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCch
Q 014834 167 -GTLGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGP 242 (417)
Q Consensus 167 -~~~~s~~Ea~~~ADIViLavpd~~~--~~Vl~eI~~~lk~gaiLi-~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~ 242 (417)
.+..+..++++++|+||=++-.+.. .+++.+|-..-++.+++. -.+.+.+..+.. .....-.|...|=--|.+
T Consensus 84 i~~~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~---~~~~~srf~GlHFfNPvP 160 (298)
T KOG2304|consen 84 IKTSTNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIAS---ATQRPSRFAGLHFFNPVP 160 (298)
T ss_pred HHHcCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHh---hccChhhhceeeccCCch
Confidence 1245677889999999877654433 356767766677887765 677787766654 233334677777666777
Q ss_pred hHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 243 ~vr~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~ 287 (417)
+++ +.+ +.-+.+.|++-......+..++|..
T Consensus 161 vMK-LvE-------------Vir~~~TS~eTf~~l~~f~k~~gKt 191 (298)
T KOG2304|consen 161 VMK-LVE-------------VIRTDDTSDETFNALVDFGKAVGKT 191 (298)
T ss_pred hHH-Hhh-------------hhcCCCCCHHHHHHHHHHHHHhCCC
Confidence 653 222 1226677888888889999999975
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0002 Score=70.04 Aligned_cols=160 Identities=18% Similarity=0.230 Sum_probs=89.7
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCc
Q 014834 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (417)
Q Consensus 111 mkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~ 189 (417)
++||+|||+ |.||..+++.+.+. .++++....+.+..........|+.. ..+++++++++|+|+.++||.
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~-----~~~elvav~d~~~~~~~~~~~~~i~~----~~dl~~ll~~~DvVid~t~p~ 71 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAA-----EDLELVAAVDRPGSPLVGQGALGVAI----TDDLEAVLADADVLIDFTTPE 71 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCCccccccCCCCccc----cCCHHHhccCCCEEEECCCHH
Confidence 479999998 99999999988763 15666544443322222223344433 568888888999999999998
Q ss_pred hHHHHHHHHHhcCCCCc-EEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhH--HHHHhhcccccC-CCceEEEee
Q 014834 190 AQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSV--RRLYVQGKEING-AGINSSFAV 265 (417)
Q Consensus 190 ~~~~Vl~eI~~~lk~ga-iLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~v--r~ly~~G~~~~G-~Gv~~liav 265 (417)
...++...... .|. +|+=..|++....+. .....+.++ +.++||..-... ..+-+.--...| .-+-. +-.
T Consensus 72 ~~~~~~~~al~---~G~~vvigttG~s~~~~~~-l~~aa~~~~-v~~s~n~s~g~~~~~~l~~~aa~~l~~~d~ei-~E~ 145 (257)
T PRK00048 72 ATLENLEFALE---HGKPLVIGTTGFTEEQLAE-LEEAAKKIP-VVIAPNFSIGVNLLMKLAEKAAKYLGDYDIEI-IEA 145 (257)
T ss_pred HHHHHHHHHHH---cCCCEEEECCCCCHHHHHH-HHHHhcCCC-EEEECcchHHHHHHHHHHHHHHHhcCCCCEEE-EEc
Confidence 88777765443 354 444455777544332 111224444 445565543321 001000000111 11111 222
Q ss_pred cC----C-CCHHHHHHHHHHHHHhC
Q 014834 266 HQ----D-VDGRATNVALGWSVALG 285 (417)
Q Consensus 266 ~~----d-vsgea~e~a~~L~~alG 285 (417)
|. | +||.++.++..+....+
T Consensus 146 HH~~K~DaPSGTA~~l~~~i~~~~~ 170 (257)
T PRK00048 146 HHRHKVDAPSGTALKLAEAIAEARG 170 (257)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHhhc
Confidence 33 2 47888888888877665
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00017 Score=75.34 Aligned_cols=75 Identities=20% Similarity=0.230 Sum_probs=58.4
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCC-cEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G-~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
.+.| ++|+|||+|.||..+++.|+.. | .+|++.+|+..+..+.+.+.|.... ...+..+++.++|+||.+
T Consensus 177 ~l~~-~~VlViGaG~iG~~~a~~L~~~------G~~~V~v~~rs~~ra~~la~~~g~~~i--~~~~l~~~l~~aDvVi~a 247 (417)
T TIGR01035 177 SLKG-KKALLIGAGEMGELVAKHLLRK------GVGKILIANRTYERAEDLAKELGGEAV--KFEDLEEYLAEADIVISS 247 (417)
T ss_pred CccC-CEEEEECChHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHcCCeEe--eHHHHHHHHhhCCEEEEC
Confidence 3778 9999999999999999999988 8 5788888876665667777664320 123567888999999999
Q ss_pred cCCch
Q 014834 186 ISDAA 190 (417)
Q Consensus 186 vpd~~ 190 (417)
|+...
T Consensus 248 T~s~~ 252 (417)
T TIGR01035 248 TGAPH 252 (417)
T ss_pred CCCCC
Confidence 97543
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00017 Score=77.58 Aligned_cols=85 Identities=18% Similarity=0.138 Sum_probs=61.8
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHc-CceecCCCcCCHHhhcCcCCEEEEc
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~-G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
+.+ ++|+|||.|.||..++++|... |. +|++.+|+..+....+.+. |....-....+..+++.++|+||.+
T Consensus 264 l~~-kkVlVIGAG~mG~~~a~~L~~~------G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsA 336 (519)
T PLN00203 264 HAS-ARVLVIGAGKMGKLLVKHLVSK------GCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTS 336 (519)
T ss_pred CCC-CEEEEEeCHHHHHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEc
Confidence 667 9999999999999999999988 87 7888998876666666655 3211000134567889999999999
Q ss_pred cCCc---hHHHHHHHHH
Q 014834 186 ISDA---AQADNYEKIF 199 (417)
Q Consensus 186 vpd~---~~~~Vl~eI~ 199 (417)
|+.. ...+.++.+.
T Consensus 337 T~s~~pvI~~e~l~~~~ 353 (519)
T PLN00203 337 TSSETPLFLKEHVEALP 353 (519)
T ss_pred cCCCCCeeCHHHHHHhh
Confidence 8632 2345666554
|
|
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00042 Score=68.24 Aligned_cols=161 Identities=14% Similarity=0.135 Sum_probs=90.3
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEec-CChhh--HHHHHH-----cCceecCCCcCCHHhhcCcCCE
Q 014834 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLR-KGSRS--FAEARA-----AGFTEENGTLGDIYETISGSDL 181 (417)
Q Consensus 111 mkkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r-~~s~s--~~~A~~-----~G~~~~~~~~~s~~Ea~~~ADI 181 (417)
|.||+||| +|.||..+++.+.+. .+++++...+ .++.. ...+.. .|+.. +.+++++...+|+
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~-----~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~----~~d~~~l~~~~Dv 71 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAA-----EGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPV----TDDLEAVETDPDV 71 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCCccccCCCHHHhcCcCcCCcee----eCCHHHhcCCCCE
Confidence 46999999 699999999999864 1676654444 32211 112222 24443 4678787667999
Q ss_pred EEEccCCchHHHHHHHHHhcCCCCc-EEEEecCchhhhhhhcccCCCCCc-cEEEeccCCCchhH--HHHHhhccccc-C
Q 014834 182 VLLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSIGLDFPKNI-GVIAVCPKGMGPSV--RRLYVQGKEIN-G 256 (417)
Q Consensus 182 ViLavpd~~~~~Vl~eI~~~lk~ga-iLi~a~G~~i~~~~~~~i~~~~dv-~VI~v~Pntpg~~v--r~ly~~G~~~~-G 256 (417)
|+.++||..+.+++..... .|. +|+=..|++....++ ....-+.- --+.+.||++--+. -++.++-.+.. .
T Consensus 72 VIdfT~p~~~~~~~~~al~---~g~~vVigttg~~~e~~~~-l~~aA~~~g~~v~~a~NfSlGv~ll~~~~~~aa~~l~~ 147 (266)
T TIGR00036 72 LIDFTTPEGVLNHLKFALE---HGVRLVVGTTGFSEEDKQE-LADLAEKAGIAAVIAPNFSIGVNLMFKLLEKAAKYLGD 147 (266)
T ss_pred EEECCChHHHHHHHHHHHH---CCCCEEEECCCCCHHHHHH-HHHHHhcCCccEEEECcccHHHHHHHHHHHHHHHhccC
Confidence 9999999888887765543 344 555556887543332 11111221 23556777765441 11111100000 1
Q ss_pred CCceEEEeecC----C-CCHHHHHHHHHHHHHhC
Q 014834 257 AGINSSFAVHQ----D-VDGRATNVALGWSVALG 285 (417)
Q Consensus 257 ~Gv~~liav~~----d-vsgea~e~a~~L~~alG 285 (417)
..+-. +-.|. | +||.++.+++.+....+
T Consensus 148 ~dieI-~E~HH~~K~DaPSGTA~~l~~~i~~~~~ 180 (266)
T TIGR00036 148 YDIEI-IELHHRHKKDAPSGTALKTAEMIAEARG 180 (266)
T ss_pred CCEEe-eeeccCCCCCCCCHHHHHHHHHHHHhhc
Confidence 11122 22232 2 47888888888877765
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00041 Score=68.95 Aligned_cols=69 Identities=25% Similarity=0.239 Sum_probs=44.8
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHH--cCceec--CC---CcCCHHhhcCcCCEE
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA--AGFTEE--NG---TLGDIYETISGSDLV 182 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~--~G~~~~--~~---~~~s~~Ea~~~ADIV 182 (417)
|+||+|||.|+||..+|..+... |+ +|++.++..+.....+.+ ...... +. ...+. +.+++||+|
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~------~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiV 74 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALK------ELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVV 74 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEE
Confidence 68999999999999999999877 65 787777654332222211 111000 00 12345 568999999
Q ss_pred EEcc
Q 014834 183 LLLI 186 (417)
Q Consensus 183 iLav 186 (417)
|+++
T Consensus 75 ii~~ 78 (307)
T PRK06223 75 VITA 78 (307)
T ss_pred EECC
Confidence 9986
|
|
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00015 Score=74.15 Aligned_cols=97 Identities=19% Similarity=0.228 Sum_probs=66.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHc---CceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~---G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
-++++|||+|.||..+++.+..-. .+ +|.|++|..++..+.+++. |+.. ..+.+.++++++||+|+.+|
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr-----~i~~V~v~~r~~~~a~~~~~~~~~~~~~v--~~~~~~~~av~~ADIIvtaT 201 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALL-----GIEEIRLYDIDPAATAKLARNLAGPGLRI--VACRSVAEAVEGADIITTVT 201 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhC-----CceEEEEEeCCHHHHHHHHHHHHhcCCcE--EEeCCHHHHHhcCCEEEEec
Confidence 378999999999999998887641 33 7888888766544444332 3321 01568999999999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCchh
Q 014834 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLL 216 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiLi~a~G~~i 216 (417)
+......+++. ..++||+.|.-.+.+..
T Consensus 202 ~S~~~~Pvl~~--~~lkpG~hV~aIGs~~p 229 (346)
T PRK07589 202 ADKTNATILTD--DMVEPGMHINAVGGDCP 229 (346)
T ss_pred CCCCCCceecH--HHcCCCcEEEecCCCCC
Confidence 75432234431 35689998776665544
|
|
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00023 Score=71.88 Aligned_cols=93 Identities=18% Similarity=0.217 Sum_probs=66.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHH----cCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~----~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
++|+|||+|.||..++..+.... ++ +|.+++|..++..+.+.+ .++.. ..+.+.+++++++|+|+.+|
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~-----~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~aDiVi~aT 200 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVR-----DIERVRVYSRTFEKAYAFAQEIQSKFNTEI--YVVNSADEAIEEADIIVTVT 200 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcC-----CccEEEEECCCHHHHHHHHHHHHHhcCCcE--EEeCCHHHHHhcCCEEEEcc
Confidence 89999999999999998876430 44 677888876665555542 34421 01567889999999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCchh
Q 014834 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLL 216 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiLi~a~G~~i 216 (417)
|.. + .++. ..+++|+.|.-.+.+..
T Consensus 201 ~s~-~-p~i~---~~l~~G~hV~~iGs~~p 225 (325)
T PRK08618 201 NAK-T-PVFS---EKLKKGVHINAVGSFMP 225 (325)
T ss_pred CCC-C-cchH---HhcCCCcEEEecCCCCc
Confidence 965 2 2443 56799998876666543
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00021 Score=70.96 Aligned_cols=75 Identities=15% Similarity=0.101 Sum_probs=55.8
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcC-----ceecCCCcCCHHhhcCcCC
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG-----FTEENGTLGDIYETISGSD 180 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G-----~~~~~~~~~s~~Ea~~~AD 180 (417)
.+++ ++|.|||+|-+|.+++..|... |. +|.|.+|..++..+.+++.+ ... ....+..+.++++|
T Consensus 124 ~~~~-k~vlIlGaGGaaraia~aL~~~------G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~--~~~~~~~~~~~~aD 194 (284)
T PRK12549 124 DASL-ERVVQLGAGGAGAAVAHALLTL------GVERLTIFDVDPARAAALADELNARFPAARA--TAGSDLAAALAAAD 194 (284)
T ss_pred CccC-CEEEEECCcHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHHHHHHhhCCCeEE--EeccchHhhhCCCC
Confidence 3567 8999999999999999999998 87 78889988766666665432 111 00223455678899
Q ss_pred EEEEccCCch
Q 014834 181 LVLLLISDAA 190 (417)
Q Consensus 181 IViLavpd~~ 190 (417)
+||.+||...
T Consensus 195 iVInaTp~Gm 204 (284)
T PRK12549 195 GLVHATPTGM 204 (284)
T ss_pred EEEECCcCCC
Confidence 9999998653
|
|
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00019 Score=72.00 Aligned_cols=95 Identities=13% Similarity=0.131 Sum_probs=66.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHH----cCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~----~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
-++++|||+|.||..+++.+..- ..+ +|.|++|..++..+.+.+ .|+.. ..+.+.+|++.+||||+.+
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v-----~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v--~~~~~~~eav~~aDIV~ta 189 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASV-----YNPKRIRVYSRNFDHARAFAERFSKEFGVDI--RPVDNAEAALRDADTITSI 189 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhc-----CCCCEEEEECCCHHHHHHHHHHHHHhcCCcE--EEeCCHHHHHhcCCEEEEe
Confidence 38999999999999999998864 134 788888886665554443 24321 1156899999999999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEecCchh
Q 014834 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFLL 216 (417)
Q Consensus 186 vpd~~~~~Vl~eI~~~lk~gaiLi~a~G~~i 216 (417)
|+... .+++ ...++||+.|.-.+.+..
T Consensus 190 T~s~~--P~~~--~~~l~pg~hV~aiGs~~p 216 (301)
T PRK06407 190 TNSDT--PIFN--RKYLGDEYHVNLAGSNYP 216 (301)
T ss_pred cCCCC--cEec--HHHcCCCceEEecCCCCC
Confidence 99543 2332 235688887776555543
|
|
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00036 Score=71.08 Aligned_cols=96 Identities=21% Similarity=0.253 Sum_probs=69.0
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHH---cCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 110 gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~---~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
+...++|||+|.|+..|.+.++.- .++ +|.|+.|+.+...+.+.. .+... -..+.+.++++++||+|+.+
T Consensus 129 da~~laiIGaG~qA~~ql~a~~~v-----~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~-v~a~~s~~~av~~aDiIvt~ 202 (330)
T COG2423 129 DASTLAIIGAGAQARTQLEALKAV-----RDIREIRVYSRDPEAAEAFAARLRKRGGEA-VGAADSAEEAVEGADIVVTA 202 (330)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhh-----CCccEEEEEcCCHHHHHHHHHHHHhhcCcc-ceeccCHHHHhhcCCEEEEe
Confidence 347899999999999999999875 144 788888886655554432 23210 12267899999999999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEecCch
Q 014834 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 186 vpd~~~~~Vl~eI~~~lk~gaiLi~a~G~~ 215 (417)
||... .+++ ...++||+.|.-.++..
T Consensus 203 T~s~~--Pil~--~~~l~~G~hI~aiGad~ 228 (330)
T COG2423 203 TPSTE--PVLK--AEWLKPGTHINAIGADA 228 (330)
T ss_pred cCCCC--Ceec--HhhcCCCcEEEecCCCC
Confidence 99876 3332 34578999888666653
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00019 Score=75.09 Aligned_cols=75 Identities=12% Similarity=0.157 Sum_probs=59.4
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcC-ceecCCCcCCHHhhcCcCCEEEE
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G-~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
.+.| ++|.|||.|-||.+++.+|... |. +++|.+|+..+..+.+.+.+ ... -...+..+.+.++|+||.
T Consensus 178 ~l~~-kkvlviGaG~~a~~va~~L~~~------g~~~I~V~nRt~~ra~~La~~~~~~~~--~~~~~l~~~l~~aDiVI~ 248 (414)
T PRK13940 178 NISS-KNVLIIGAGQTGELLFRHVTAL------APKQIMLANRTIEKAQKITSAFRNASA--HYLSELPQLIKKADIIIA 248 (414)
T ss_pred CccC-CEEEEEcCcHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHHHHhcCCeE--ecHHHHHHHhccCCEEEE
Confidence 4677 9999999999999999999988 86 78899998777777887765 321 012445678899999999
Q ss_pred ccCCch
Q 014834 185 LISDAA 190 (417)
Q Consensus 185 avpd~~ 190 (417)
||+...
T Consensus 249 aT~a~~ 254 (414)
T PRK13940 249 AVNVLE 254 (414)
T ss_pred CcCCCC
Confidence 998543
|
|
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00029 Score=71.23 Aligned_cols=89 Identities=18% Similarity=0.225 Sum_probs=64.3
Q ss_pred CEEEEEcccchHHHHHHHHHh-hhhhhcCCc-EEEEEecCChhhHHHHHHc----CceecCCCcCCHHhhcCcCCEEEEc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRD-SLAEAKSDI-VVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~-s~~~~~~G~-~ViVg~r~~s~s~~~A~~~----G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
++++|||+|.||..++..|.. . ++ +|.|++|..++..+.+.+. |+.. ..+.+.++++++||+|+.+
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~~------~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v--~~~~~~~~av~~aDiVvta 201 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLVR------DIRSARIWARDSAKAEALALQLSSLLGIDV--TAATDPRAAMSGADIIVTT 201 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHhC------CccEEEEECCCHHHHHHHHHHHHhhcCceE--EEeCCHHHHhccCCEEEEe
Confidence 799999999999999999975 3 54 6888888876666655543 5432 0146788999999999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
||... .++. ...+++|+.|...+
T Consensus 202 T~s~~--p~i~--~~~l~~g~~i~~vg 224 (326)
T TIGR02992 202 TPSET--PILH--AEWLEPGQHVTAMG 224 (326)
T ss_pred cCCCC--cEec--HHHcCCCcEEEeeC
Confidence 98643 2332 13478898766443
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00032 Score=61.23 Aligned_cols=94 Identities=19% Similarity=0.260 Sum_probs=59.7
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCh-hhH--HHHH-----HcCceecCCCcCCHHhhcCcCCEE
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSF--AEAR-----AAGFTEENGTLGDIYETISGSDLV 182 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s-~s~--~~A~-----~~G~~~~~~~~~s~~Ea~~~ADIV 182 (417)
+||+|+|+ |.||..+++.+.+. .++++....++.. ... +... ..|+.. ..++++++..+|+|
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~-----~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v----~~~l~~~~~~~DVv 71 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES-----PGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPV----TDDLEELLEEADVV 71 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS-----TTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBE----BS-HHHHTTH-SEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-----CCcEEEEEEecCCcccccchhhhhhCcCCccccc----chhHHHhcccCCEE
Confidence 48999999 99999999999984 1777655544322 100 0111 234443 46899999999999
Q ss_pred EEccCCchHHHHHHHHHhcCCCCc-EEEEecCchhh
Q 014834 183 LLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLG 217 (417)
Q Consensus 183 iLavpd~~~~~Vl~eI~~~lk~ga-iLi~a~G~~i~ 217 (417)
|-.+-|....+.++....+ |. +|+=..|++-.
T Consensus 72 IDfT~p~~~~~~~~~~~~~---g~~~ViGTTG~~~~ 104 (124)
T PF01113_consen 72 IDFTNPDAVYDNLEYALKH---GVPLVIGTTGFSDE 104 (124)
T ss_dssp EEES-HHHHHHHHHHHHHH---T-EEEEE-SSSHHH
T ss_pred EEcCChHHhHHHHHHHHhC---CCCEEEECCCCCHH
Confidence 9999777777777655444 44 45567898643
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00029 Score=71.21 Aligned_cols=93 Identities=19% Similarity=0.167 Sum_probs=62.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHH----cCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~----~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
++|+|||+|.||..++.+|... .++ .|.+++|..++..+.+.+ .|+.. ..+.+.+++++ +|+|+++|
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~-----~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~-aDiVv~aT 201 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEV-----FDLEEVRVYDRTKSSAEKFVERMSSVVGCDV--TVAEDIEEACD-CDILVTTT 201 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhh-----CCceEEEEECCCHHHHHHHHHHHHhhcCceE--EEeCCHHHHhh-CCEEEEec
Confidence 7899999999999999999753 144 566677765444444433 24321 01457888887 99999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCchh
Q 014834 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLL 216 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiLi~a~G~~i 216 (417)
|... .+++ ...+++|+.|.-.+....
T Consensus 202 ps~~--P~~~--~~~l~~g~hV~~iGs~~p 227 (326)
T PRK06046 202 PSRK--PVVK--AEWIKEGTHINAIGADAP 227 (326)
T ss_pred CCCC--cEec--HHHcCCCCEEEecCCCCC
Confidence 9753 2332 234689998776665543
|
|
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00069 Score=65.61 Aligned_cols=92 Identities=26% Similarity=0.315 Sum_probs=64.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcE-EEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~-ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~ 190 (417)
.+||+||||.+|..+..-+++- .-+++ +.+++++.++..+.+...+... +.+++|.+++.|+|+=|-++++
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~----~~~~e~v~v~D~~~ek~~~~~~~~~~~~----~s~ide~~~~~DlvVEaAS~~A 72 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDG----RVDFELVAVYDRDEEKAKELEASVGRRC----VSDIDELIAEVDLVVEAASPEA 72 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcC----CcceeEEEEecCCHHHHHHHHhhcCCCc----cccHHHHhhccceeeeeCCHHH
Confidence 4799999999999999988863 01244 4455555444434443344332 5789999999999999999999
Q ss_pred HHHHHHHHHhcCCCCc-EEEEecCc
Q 014834 191 QADNYEKIFSCMKPNS-ILGLSHGF 214 (417)
Q Consensus 191 ~~~Vl~eI~~~lk~ga-iLi~a~G~ 214 (417)
..+...++.. .|. +|+++-|.
T Consensus 73 v~e~~~~~L~---~g~d~iV~SVGA 94 (255)
T COG1712 73 VREYVPKILK---AGIDVIVMSVGA 94 (255)
T ss_pred HHHHhHHHHh---cCCCEEEEechh
Confidence 9888877654 343 66666664
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00031 Score=65.17 Aligned_cols=97 Identities=21% Similarity=0.151 Sum_probs=62.8
Q ss_pred hhccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHc----CceecCCCcC---CHHhhcC
Q 014834 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEENGTLG---DIYETIS 177 (417)
Q Consensus 106 ~~l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~----G~~~~~~~~~---s~~Ea~~ 177 (417)
..+++ +++.|+|. |.+|.+++..|.+. |.+|++..|+.++..+.+... +......... +..++++
T Consensus 24 ~~l~~-~~vlVlGgtG~iG~~~a~~l~~~------g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 96 (194)
T cd01078 24 KDLKG-KTAVVLGGTGPVGQRAAVLLARE------GARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIK 96 (194)
T ss_pred cCCCC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHh
Confidence 35678 99999996 99999999999988 888888887655444433322 2211000011 2347788
Q ss_pred cCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 178 ~ADIViLavpd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
++|+||.++|...+. ........+++.++++.
T Consensus 97 ~~diVi~at~~g~~~--~~~~~~~~~~~~vv~D~ 128 (194)
T cd01078 97 GADVVFAAGAAGVEL--LEKLAWAPKPLAVAADV 128 (194)
T ss_pred cCCEEEECCCCCcee--chhhhcccCceeEEEEc
Confidence 999999999977651 11222234556677754
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00037 Score=70.76 Aligned_cols=75 Identities=11% Similarity=0.236 Sum_probs=50.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~~ 191 (417)
.||+|||+|+||..++..+.+. .+++++...+.+... ......++.. ..+.+++..+.|+|++|+|+..+
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~-----pd~ELVgV~dr~~~~-~~~~~~~v~~----~~d~~e~l~~iDVViIctPs~th 73 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQ-----PDMELVGVFSRRGAE-TLDTETPVYA----VADDEKHLDDVDVLILCMGSATD 73 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhC-----CCcEEEEEEcCCcHH-HHhhcCCccc----cCCHHHhccCCCEEEEcCCCccC
Confidence 5899999999999999999765 156765333332211 2222344432 35677788899999999998777
Q ss_pred HHHHH
Q 014834 192 ADNYE 196 (417)
Q Consensus 192 ~~Vl~ 196 (417)
.+...
T Consensus 74 ~~~~~ 78 (324)
T TIGR01921 74 IPEQA 78 (324)
T ss_pred HHHHH
Confidence 55443
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00078 Score=68.73 Aligned_cols=96 Identities=20% Similarity=0.229 Sum_probs=62.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChh-hHHHHHHcCceec-----------C-C--CcCCHHhh
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEE-----------N-G--TLGDIYET 175 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~-s~~~A~~~G~~~~-----------~-~--~~~s~~Ea 175 (417)
|.||||+|+|.||+.+++.+.+. .+++++...+.... ....++..|+... + + ...+.+++
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~-----~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el 75 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQ-----PDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDL 75 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcC-----CCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHh
Confidence 46999999999999999998864 15676555543322 1223443342210 0 0 02356777
Q ss_pred cCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 176 ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 176 ~~~ADIViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
..++|+|+.++|+....+..+.. ++.|+.+++.+|.
T Consensus 76 ~~~vDVVIdaT~~~~~~e~a~~~---~~aGk~VI~~~~~ 111 (341)
T PRK04207 76 LEKADIVVDATPGGVGAKNKELY---EKAGVKAIFQGGE 111 (341)
T ss_pred hccCCEEEECCCchhhHHHHHHH---HHCCCEEEEcCCC
Confidence 78899999999999888777643 3457777777763
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00057 Score=70.83 Aligned_cols=109 Identities=22% Similarity=0.322 Sum_probs=71.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhh-------------------HHHHHHcC-ceecCCCcCC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-------------------FAEARAAG-FTEENGTLGD 171 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s-------------------~~~A~~~G-~~~~~~~~~s 171 (417)
.+|||||+|-+|.++|..+..+ |++|+ |.+.+++. .+.+.+.| +.. +.+
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~------G~~Vi-G~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lra----Ttd 78 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASA------GFKVI-GVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRA----TTD 78 (436)
T ss_pred eEEEEEccccccHHHHHHHHHc------CCceE-eEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceE----ecC
Confidence 7999999999999999999999 99875 55543322 23444555 332 455
Q ss_pred HHhhcCcCCEEEEccCCch----H------HHHHHHHHhcCCCCcEEEEec----Cch---hhhhhh--cccCCCCCccE
Q 014834 172 IYETISGSDLVLLLISDAA----Q------ADNYEKIFSCMKPNSILGLSH----GFL---LGHLQS--IGLDFPKNIGV 232 (417)
Q Consensus 172 ~~Ea~~~ADIViLavpd~~----~------~~Vl~eI~~~lk~gaiLi~a~----G~~---i~~~~~--~~i~~~~dv~V 232 (417)
.+++ +.||++++|||... + ....+.|.+.|++|++|++=+ |.+ +..+.+ .++.+++|+.+
T Consensus 79 ~~~l-~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~l 157 (436)
T COG0677 79 PEEL-KECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYL 157 (436)
T ss_pred hhhc-ccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeE
Confidence 6554 58999999988321 1 123346999999999877443 442 112222 45666666543
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00045 Score=71.20 Aligned_cols=98 Identities=15% Similarity=0.105 Sum_probs=66.1
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCC--CcCCHHhhcCcCCEEEEc
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG--TLGDIYETISGSDLVLLL 185 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~--~~~s~~Ea~~~ADIViLa 185 (417)
+.+ .+|.|||+|.+|...++.++.. |.+|++.+++..+....+...|...... ...++.+.++++|+||.+
T Consensus 165 l~~-~~VlViGaG~vG~~aa~~a~~l------Ga~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a 237 (370)
T TIGR00518 165 VEP-GDVTIIGGGVVGTNAAKMANGL------GATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGA 237 (370)
T ss_pred CCC-ceEEEEcCCHHHHHHHHHHHHC------CCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEc
Confidence 455 7899999999999999999988 9888888776544333334444321000 012356788999999999
Q ss_pred cCC--chHHHHH-HHHHhcCCCCcEEEEec
Q 014834 186 ISD--AAQADNY-EKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd--~~~~~Vl-~eI~~~lk~gaiLi~a~ 212 (417)
++. .....++ ++....|+++.+|++.+
T Consensus 238 ~~~~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 238 VLIPGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred cccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 742 2223333 45556789999888654
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00015 Score=73.06 Aligned_cols=96 Identities=22% Similarity=0.282 Sum_probs=55.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHH---cCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~---~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
.++++|||+|.||..+++.+..-. ++ +|.|++|+.++..+.+.+ .|+.. ..+.+.++++++||+|+.+|
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~~-----~i~~v~v~~r~~~~~~~~~~~~~~~~~~v--~~~~~~~~av~~aDii~taT 200 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAVR-----PIKEVRVYSRSPERAEAFAARLRDLGVPV--VAVDSAEEAVRGADIIVTAT 200 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHHS-------SEEEEE-SSHHHHHHHHHHHHCCCTCE--EEESSHHHHHTTSSEEEE--
T ss_pred CceEEEECCCHHHHHHHHHHHHhC-----CceEEEEEccChhHHHHHHHhhccccccc--eeccchhhhcccCCEEEEcc
Confidence 378999999999999999988751 34 788888875544443333 24332 12568999999999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCch
Q 014834 187 SDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiLi~a~G~~ 215 (417)
|......+++ ...++||+.|.-.+...
T Consensus 201 ~s~~~~P~~~--~~~l~~g~hi~~iGs~~ 227 (313)
T PF02423_consen 201 PSTTPAPVFD--AEWLKPGTHINAIGSYT 227 (313)
T ss_dssp --SSEEESB---GGGS-TT-EEEE-S-SS
T ss_pred CCCCCCcccc--HHHcCCCcEEEEecCCC
Confidence 9765212332 23578898777555543
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00056 Score=67.83 Aligned_cols=77 Identities=25% Similarity=0.257 Sum_probs=58.0
Q ss_pred CEEEEEcccchH-HHHHHHHHhhhhhhcCC--cE-EEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCc--CCEEEEc
Q 014834 112 NQIGVIGWGSQG-PAQAQNLRDSLAEAKSD--IV-VKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLL 185 (417)
Q Consensus 112 kkIgIIG~G~mG-~AiA~~Lr~s~~~~~~G--~~-ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~--ADIViLa 185 (417)
.||||||+|.++ ..++..+++. + +. +.+.+++.++..+.+++.|+.. ...+.++++++ .|+|+++
T Consensus 4 irvgiiG~G~~~~~~~~~~~~~~------~~~~~~vav~d~~~~~a~~~a~~~~~~~---~~~~~~~ll~~~~iD~V~Ia 74 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPALAAL------GGGLELVAVVDRDPERAEAFAEEFGIAK---AYTDLEELLADPDIDAVYIA 74 (342)
T ss_pred eEEEEEcccHHHHHHhHHHHHhC------CCceEEEEEecCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEEc
Confidence 789999999555 5688888876 4 23 3344566666678888889851 16789998886 5999999
Q ss_pred cCCchHHHHHHH
Q 014834 186 ISDAAQADNYEK 197 (417)
Q Consensus 186 vpd~~~~~Vl~e 197 (417)
+|+..+.++...
T Consensus 75 tp~~~H~e~~~~ 86 (342)
T COG0673 75 TPNALHAELALA 86 (342)
T ss_pred CCChhhHHHHHH
Confidence 999999887743
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.001 Score=66.78 Aligned_cols=69 Identities=19% Similarity=0.184 Sum_probs=44.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHH---cCceec-CC---CcCCHHhhcCcCCEEE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA---AGFTEE-NG---TLGDIYETISGSDLVL 183 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~---~G~~~~-~~---~~~s~~Ea~~~ADIVi 183 (417)
+||+|||.|.||..+|..|... |+ +|++.+.........+.+ .+.... .. ...+.++ +++||+||
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~------g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVI 74 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK------ELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVV 74 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc------CCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEE
Confidence 6899999999999999999887 76 777776643321112110 010000 00 1246666 78999999
Q ss_pred EccC
Q 014834 184 LLIS 187 (417)
Q Consensus 184 Lavp 187 (417)
++.+
T Consensus 75 itag 78 (305)
T TIGR01763 75 ITAG 78 (305)
T ss_pred EcCC
Confidence 9987
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00038 Score=60.16 Aligned_cols=92 Identities=17% Similarity=0.170 Sum_probs=57.9
Q ss_pred EEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEE-EEecCChhhHHHHHHcC----ceecCCCcC-CHHhhcCcCCEEEEc
Q 014834 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAG----FTEENGTLG-DIYETISGSDLVLLL 185 (417)
Q Consensus 113 kIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vi-Vg~r~~s~s~~~A~~~G----~~~~~~~~~-s~~Ea~~~ADIViLa 185 (417)
||+||| .|.+|..+.+.|.+. ..++++ +..++.+.-.......+ +.. -.+. ...+.+.++|+||+|
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~h-----p~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Dvvf~a 73 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEH-----PDFELVALVSSSRSAGKPLSEVFPHPKGFED--LSVEDADPEELSDVDVVFLA 73 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-----STEEEEEEEESTTTTTSBHHHTTGGGTTTEE--EBEEETSGHHHTTESEEEE-
T ss_pred CEEEECCCCHHHHHHHHHHhcC-----CCccEEEeeeeccccCCeeehhccccccccc--eeEeecchhHhhcCCEEEec
Confidence 799999 999999999999885 134433 33343311112222221 111 0011 123445999999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 186 vpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
+|+....++.+.+ +++|..|++.++-
T Consensus 74 ~~~~~~~~~~~~~---~~~g~~ViD~s~~ 99 (121)
T PF01118_consen 74 LPHGASKELAPKL---LKAGIKVIDLSGD 99 (121)
T ss_dssp SCHHHHHHHHHHH---HHTTSEEEESSST
T ss_pred CchhHHHHHHHHH---hhCCcEEEeCCHH
Confidence 9999888888776 4568788888774
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00029 Score=69.03 Aligned_cols=93 Identities=19% Similarity=0.123 Sum_probs=60.8
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHc---CceecCCCcCCHHh-hcCcCCEEE
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYE-TISGSDLVL 183 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~---G~~~~~~~~~s~~E-a~~~ADIVi 183 (417)
.++ +++.|||.|.+|.+++..|.+. |.+|.+.+|...+..+.+.+. |... ..+.++ ...++|+||
T Consensus 115 ~~~-k~vliiGaGg~g~aia~~L~~~------g~~v~v~~R~~~~~~~la~~~~~~~~~~----~~~~~~~~~~~~DivI 183 (270)
T TIGR00507 115 RPN-QRVLIIGAGGAARAVALPLLKA------DCNVIIANRTVSKAEELAERFQRYGEIQ----AFSMDELPLHRVDLII 183 (270)
T ss_pred ccC-CEEEEEcCcHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHhhcCceE----EechhhhcccCccEEE
Confidence 456 8999999999999999999998 888888888765555554442 2211 123333 346899999
Q ss_pred EccCCchHHHHHH-HH-HhcCCCCcEEEEe
Q 014834 184 LLISDAAQADNYE-KI-FSCMKPNSILGLS 211 (417)
Q Consensus 184 Lavpd~~~~~Vl~-eI-~~~lk~gaiLi~a 211 (417)
.++|.....++-+ .+ ...++++.+++++
T Consensus 184 natp~gm~~~~~~~~~~~~~l~~~~~v~D~ 213 (270)
T TIGR00507 184 NATSAGMSGNIDEPPVPAEKLKEGMVVYDM 213 (270)
T ss_pred ECCCCCCCCCCCCCCCCHHHcCCCCEEEEe
Confidence 9999754322100 01 2335667666644
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00033 Score=73.22 Aligned_cols=73 Identities=22% Similarity=0.334 Sum_probs=62.3
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
.|++ +++.|||+|-||.-.|+.|... |+ +|+|.+|..++..+.|.+.|... -.+.+..+.+.++|+||.+
T Consensus 175 ~L~~-~~vlvIGAGem~~lva~~L~~~------g~~~i~IaNRT~erA~~La~~~~~~~--~~l~el~~~l~~~DvViss 245 (414)
T COG0373 175 SLKD-KKVLVIGAGEMGELVAKHLAEK------GVKKITIANRTLERAEELAKKLGAEA--VALEELLEALAEADVVISS 245 (414)
T ss_pred cccc-CeEEEEcccHHHHHHHHHHHhC------CCCEEEEEcCCHHHHHHHHHHhCCee--ecHHHHHHhhhhCCEEEEe
Confidence 3788 9999999999999999999999 86 88999999889999999999543 1234567789999999999
Q ss_pred cCC
Q 014834 186 ISD 188 (417)
Q Consensus 186 vpd 188 (417)
|.-
T Consensus 246 Tsa 248 (414)
T COG0373 246 TSA 248 (414)
T ss_pred cCC
Confidence 873
|
|
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00044 Score=69.85 Aligned_cols=95 Identities=19% Similarity=0.166 Sum_probs=66.7
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHH---HcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR---AAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~---~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
-++++|||+|.||..+++.+..-. .+ +|.|++|..++..+.+. +.|+.. ..+.+.++++++||||+.+|
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~-----~i~~v~v~~r~~~~a~~~~~~~~~~~~~v--~~~~~~~~av~~ADIV~taT 200 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVT-----DCRQLWVWGRSETALEEYRQYAQALGFAV--NTTLDAAEVAHAANLIVTTT 200 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcC-----CCCEEEEECCCHHHHHHHHHHHHhcCCcE--EEECCHHHHhcCCCEEEEec
Confidence 389999999999999999887641 23 78889888666544443 224432 11467899999999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCchh
Q 014834 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLL 216 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiLi~a~G~~i 216 (417)
+... .+++ ...++||+.|.-.+.+..
T Consensus 201 ~s~~--P~~~--~~~l~~G~hi~~iGs~~p 226 (315)
T PRK06823 201 PSRE--PLLQ--AEDIQPGTHITAVGADSP 226 (315)
T ss_pred CCCC--ceeC--HHHcCCCcEEEecCCCCc
Confidence 8543 3442 235789998776665543
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00051 Score=63.50 Aligned_cols=76 Identities=18% Similarity=0.258 Sum_probs=57.6
Q ss_pred hhccCCCEEEEEcccch-HHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~m-G~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..|+| ++|.|||.|.| |..+++.|... |.+|.+.+|.. .+..+.+++||+||.
T Consensus 40 ~~l~g-k~vlViG~G~~~G~~~a~~L~~~------g~~V~v~~r~~-------------------~~l~~~l~~aDiVIs 93 (168)
T cd01080 40 IDLAG-KKVVVVGRSNIVGKPLAALLLNR------NATVTVCHSKT-------------------KNLKEHTKQADIVIV 93 (168)
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHHhhC------CCEEEEEECCc-------------------hhHHHHHhhCCEEEE
Confidence 45888 99999999997 88899999998 88888777641 245678999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
+++-.. ++.. ..++++.+|++.+
T Consensus 94 at~~~~---ii~~--~~~~~~~viIDla 116 (168)
T cd01080 94 AVGKPG---LVKG--DMVKPGAVVIDVG 116 (168)
T ss_pred cCCCCc---eecH--HHccCCeEEEEcc
Confidence 999753 2321 1356777777543
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00047 Score=68.02 Aligned_cols=77 Identities=21% Similarity=0.224 Sum_probs=56.2
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCC-cEEEEEecCChhhHHHHHHcCceecCCCc-CCHHhhcCcCCEEEE
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTL-GDIYETISGSDLVLL 184 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G-~~ViVg~r~~s~s~~~A~~~G~~~~~~~~-~s~~Ea~~~ADIViL 184 (417)
.+++ +++.|||.|.+|.+++..|... | .+|++.+|+.++..+.+.+.+... .-.. .+..+.+.++|+||.
T Consensus 120 ~~~~-k~vlVlGaGg~a~ai~~aL~~~------g~~~V~v~~R~~~~a~~l~~~~~~~~-~~~~~~~~~~~~~~~DivIn 191 (278)
T PRK00258 120 DLKG-KRILILGAGGAARAVILPLLDL------GVAEITIVNRTVERAEELAKLFGALG-KAELDLELQEELADFDLIIN 191 (278)
T ss_pred CCCC-CEEEEEcCcHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHhhhcc-ceeecccchhccccCCEEEE
Confidence 4677 8999999999999999999988 8 589999998666555555443110 0001 133467789999999
Q ss_pred ccCCchH
Q 014834 185 LISDAAQ 191 (417)
Q Consensus 185 avpd~~~ 191 (417)
+||....
T Consensus 192 aTp~g~~ 198 (278)
T PRK00258 192 ATSAGMS 198 (278)
T ss_pred CCcCCCC
Confidence 9997654
|
|
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0021 Score=64.22 Aligned_cols=90 Identities=19% Similarity=0.161 Sum_probs=61.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEE-EecC-ChhhHHHHHHcCceecCCCcCCHHhhcC--cCCEEEEccC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRK-GSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViV-g~r~-~s~s~~~A~~~G~~~~~~~~~s~~Ea~~--~ADIViLavp 187 (417)
.+|||||+|++|.-++..+.+. .++++.. .++. ++...+.+++.|+.. ...+.+++++ +-|+|++++|
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~-----~~~elvaV~d~d~es~~la~A~~~Gi~~---~~~~~e~ll~~~dIDaV~iaTp 73 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRS-----EHLEMVAMVGIDPESDGLARARELGVKT---SAEGVDGLLANPDIDIVFDATS 73 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhC-----CCcEEEEEEeCCcccHHHHHHHHCCCCE---EECCHHHHhcCCCCCEEEECCC
Confidence 4799999999999998888754 1455543 3332 222346788888753 1346777775 5789999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEec
Q 014834 188 DAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
+..+.+...... +.|+.|++-.
T Consensus 74 ~~~H~e~a~~al---~aGk~VIdek 95 (285)
T TIGR03215 74 AKAHARHARLLA---ELGKIVIDLT 95 (285)
T ss_pred cHHHHHHHHHHH---HcCCEEEECC
Confidence 999988776544 3577665443
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0018 Score=64.81 Aligned_cols=67 Identities=19% Similarity=0.204 Sum_probs=47.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhHHHHHHc-------Cc--eecCCCcCCHHhhcCcCC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA-------GF--TEENGTLGDIYETISGSD 180 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~~~A~~~-------G~--~~~~~~~~s~~Ea~~~AD 180 (417)
+||+|||+|.+|.++|..|... |+ ++++.++..++....+.+. +. .. ...+. +.+++||
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~------g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i---~~~~~-~~l~~aD 70 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQ------GIADELVLIDINEEKAEGEALDLEDALAFLPSPVKI---KAGDY-SDCKDAD 70 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEE---EcCCH-HHhCCCC
Confidence 5899999999999999999988 74 7888887655444444331 11 11 12334 4578999
Q ss_pred EEEEccCC
Q 014834 181 LVLLLISD 188 (417)
Q Consensus 181 IViLavpd 188 (417)
+||+++..
T Consensus 71 IVIitag~ 78 (306)
T cd05291 71 IVVITAGA 78 (306)
T ss_pred EEEEccCC
Confidence 99999875
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0019 Score=65.85 Aligned_cols=105 Identities=16% Similarity=0.249 Sum_probs=71.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhh-cCCcEEEEEecCC---hhhHHHHHH-----------cCceecC--CCcCCHHh
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEA-KSDIVVKVGLRKG---SRSFAEARA-----------AGFTEEN--GTLGDIYE 174 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~-~~G~~ViVg~r~~---s~s~~~A~~-----------~G~~~~~--~~~~s~~E 174 (417)
.||+|||.||=|.++|+.+..+-.+. .+..+|..+.+.. .+...+.+- -|+.... -.+.|+.|
T Consensus 22 ~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl~e 101 (372)
T KOG2711|consen 22 LKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDLVE 101 (372)
T ss_pred eEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchHHH
Confidence 79999999999999999988762221 1223555543321 111111110 0111000 01568999
Q ss_pred hcCcCCEEEEccCCchHHHHHHHHHhcCCCCcE-EEEecCchh
Q 014834 175 TISGSDLVLLLISDAAQADNYEKIFSCMKPNSI-LGLSHGFLL 216 (417)
Q Consensus 175 a~~~ADIViLavpd~~~~~Vl~eI~~~lk~gai-Li~a~G~~i 216 (417)
++++||+++..+|.+-...++++|..+++++.. |+.+-||..
T Consensus 102 a~~dADilvf~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e~ 144 (372)
T KOG2711|consen 102 AAKDADILVFVVPHQFIPRICEQLKGYVKPGATAISLIKGVEV 144 (372)
T ss_pred HhccCCEEEEeCChhhHHHHHHHHhcccCCCCeEEEeecceec
Confidence 999999999999999999999999999999986 668888854
|
|
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0021 Score=64.74 Aligned_cols=91 Identities=16% Similarity=0.127 Sum_probs=64.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCh--hhHHHHHHcCceecCCCcCCHHhhcC-----cCCEEEE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETIS-----GSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s--~s~~~A~~~G~~~~~~~~~s~~Ea~~-----~ADIViL 184 (417)
.||||||+|++|..++..+.++ .++++....+.+. ...+.|++.|+.. ...+.+++++ +.|+|+.
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~-----~~velvAVvdid~es~gla~A~~~Gi~~---~~~~ie~LL~~~~~~dIDiVf~ 76 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRS-----EHLEPGAMVGIDPESDGLARARRLGVAT---SAEGIDGLLAMPEFDDIDIVFD 76 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcC-----CCcEEEEEEeCChhhHHHHHHHHcCCCc---ccCCHHHHHhCcCCCCCCEEEE
Confidence 5899999999999988888764 1455543333222 3346688888763 1356788774 5899999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~G 213 (417)
++|...+.+......+ .|+.|++...
T Consensus 77 AT~a~~H~e~a~~a~e---aGk~VID~sP 102 (302)
T PRK08300 77 ATSAGAHVRHAAKLRE---AGIRAIDLTP 102 (302)
T ss_pred CCCHHHHHHHHHHHHH---cCCeEEECCc
Confidence 9999999888766543 5777775554
|
|
| >COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0008 Score=68.98 Aligned_cols=94 Identities=24% Similarity=0.257 Sum_probs=74.3
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
--+.| |++.|.|||-.|..+|+.|+.. |.+|+|..-.+-+ .-+|.-+||. +...+|+++.+|++|.+
T Consensus 205 ~liaG-K~vVV~GYG~vGrG~A~~~rg~------GA~ViVtEvDPI~-AleA~MdGf~-----V~~m~~Aa~~gDifiT~ 271 (420)
T COG0499 205 VLLAG-KNVVVAGYGWVGRGIAMRLRGM------GARVIVTEVDPIR-ALEAAMDGFR-----VMTMEEAAKTGDIFVTA 271 (420)
T ss_pred eeecC-ceEEEecccccchHHHHHhhcC------CCeEEEEecCchH-HHHHhhcCcE-----EEEhHHhhhcCCEEEEc
Confidence 34667 9999999999999999999988 9999988655333 4456668998 46899999999999999
Q ss_pred cCCchHHHHHH-HHHhcCCCCcEEEEecCch
Q 014834 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 186 vpd~~~~~Vl~-eI~~~lk~gaiLi~a~G~~ 215 (417)
|-...+ +. +-+..||+|++|.-++=|.
T Consensus 272 TGnkdV---i~~eh~~~MkDgaIl~N~GHFd 299 (420)
T COG0499 272 TGNKDV---IRKEHFEKMKDGAILANAGHFD 299 (420)
T ss_pred cCCcCc---cCHHHHHhccCCeEEecccccc
Confidence 987544 32 4556789999888665564
|
|
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0018 Score=62.44 Aligned_cols=92 Identities=21% Similarity=0.214 Sum_probs=63.0
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc---EEEEEecCC----hhh-------HHHHHHcCceecCCCcCC
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKG----SRS-------FAEARAAGFTEENGTLGD 171 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~---~ViVg~r~~----s~s-------~~~A~~~G~~~~~~~~~s 171 (417)
..+++ ++|.|+|.|.+|.+++..|.+. |. ++++.+|++ ++. .+.++..+... ...+
T Consensus 21 ~~l~~-~rvlvlGAGgAg~aiA~~L~~~------G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~---~~~~ 90 (226)
T cd05311 21 KKIEE-VKIVINGAGAAGIAIARLLLAA------GAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK---TGGT 90 (226)
T ss_pred CCccC-CEEEEECchHHHHHHHHHHHHc------CcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc---ccCC
Confidence 35778 9999999999999999999988 87 488888872 221 33444443211 0136
Q ss_pred HHhhcCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEE
Q 014834 172 IYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGL 210 (417)
Q Consensus 172 ~~Ea~~~ADIViLavpd~~~~~Vl~eI~~~lk~gaiLi~ 210 (417)
+.++++++|+||-++|+.... +++...|.++.+|.+
T Consensus 91 l~~~l~~~dvlIgaT~~G~~~---~~~l~~m~~~~ivf~ 126 (226)
T cd05311 91 LKEALKGADVFIGVSRPGVVK---KEMIKKMAKDPIVFA 126 (226)
T ss_pred HHHHHhcCCEEEeCCCCCCCC---HHHHHhhCCCCEEEE
Confidence 778889999999999865543 233344556666553
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.001 Score=66.62 Aligned_cols=76 Identities=14% Similarity=0.204 Sum_probs=60.0
Q ss_pred hhccCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~-mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..|+| ++|.|||.|. +|..+|..|.+. |..|++..++. .++.+.+++||+||.
T Consensus 154 i~l~G-k~vvVIGrs~~VG~pla~lL~~~------gatVtv~~s~t-------------------~~l~~~~~~ADIVIs 207 (286)
T PRK14175 154 IDLEG-KNAVVIGRSHIVGQPVSKLLLQK------NASVTILHSRS-------------------KDMASYLKDADVIVS 207 (286)
T ss_pred CCCCC-CEEEEECCCchhHHHHHHHHHHC------CCeEEEEeCCc-------------------hhHHHHHhhCCEEEE
Confidence 46899 9999999998 999999999988 88888776531 256788999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
+++-... +.. .++++|++|++.+
T Consensus 208 Avg~p~~---i~~--~~vk~gavVIDvG 230 (286)
T PRK14175 208 AVGKPGL---VTK--DVVKEGAVIIDVG 230 (286)
T ss_pred CCCCCcc---cCH--HHcCCCcEEEEcC
Confidence 9986432 322 3578999888665
|
|
| >KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00054 Score=70.13 Aligned_cols=93 Identities=18% Similarity=0.210 Sum_probs=70.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHH-HH-cCceecCCCcCCHHhh---cCcCCEEEEcc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-RA-AGFTEENGTLGDIYET---ISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A-~~-~G~~~~~~~~~s~~Ea---~~~ADIViLav 186 (417)
..||.||++.||+.+++|+.+. |+.|.+++|..++.-+.. .+ .|-.. -+ ..+++|. ++.--.|+|++
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~------Gf~v~~yNRT~skvD~flaneak~~~i-~g-a~S~ed~v~klk~PR~iillv 78 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADK------GFTVCAYNRTTSKVDEFLANEAKGTKI-IG-AYSLEDFVSKLKKPRVIILLV 78 (487)
T ss_pred cchhhhhHhhhhhhhhhccccc------CceEEEeccchHhHHHHHHHhhcCCcc-cC-CCCHHHHHHhcCCCcEEEEEe
Confidence 4699999999999999999999 999999999866543222 22 22221 01 3577775 46678999999
Q ss_pred CCchHH-HHHHHHHhcCCCCcEEEEec
Q 014834 187 SDAAQA-DNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 187 pd~~~~-~Vl~eI~~~lk~gaiLi~a~ 212 (417)
+..... .+++++.|+|.+|.+|++-+
T Consensus 79 kAG~pVD~~I~~L~p~LekgDiIIDGG 105 (487)
T KOG2653|consen 79 KAGAPVDQFIEELVPYLEKGDIIIDGG 105 (487)
T ss_pred eCCCcHHHHHHHHHhhcCCCCEEEeCC
Confidence 977665 47788999999999988755
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.002 Score=65.71 Aligned_cols=95 Identities=14% Similarity=0.192 Sum_probs=58.8
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcC-ceec-CCCcCCHH-hhcCcCCEEEEcc
Q 014834 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEE-NGTLGDIY-ETISGSDLVLLLI 186 (417)
Q Consensus 111 mkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G-~~~~-~~~~~s~~-Ea~~~ADIViLav 186 (417)
|+||+|||+ |.+|..+++.|.+. .+++++...++.+.....+...+ +... +..+.+.+ +...++|+|++|+
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~-----p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~al 76 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNH-----PEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLAL 76 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcC-----CCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECC
Confidence 479999997 99999999998865 14565443333222112222222 1100 00122222 2457899999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecC
Q 014834 187 SDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiLi~a~G 213 (417)
|+..+.++..++.. .|..|++.++
T Consensus 77 P~~~~~~~v~~a~~---aG~~VID~S~ 100 (343)
T PRK00436 77 PHGVSMDLAPQLLE---AGVKVIDLSA 100 (343)
T ss_pred CcHHHHHHHHHHHh---CCCEEEECCc
Confidence 99998888877643 5888887766
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00094 Score=66.76 Aligned_cols=76 Identities=18% Similarity=0.191 Sum_probs=59.6
Q ss_pred hhccCCCEEEEEcccch-HHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~m-G~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| |+|.|||.|+. |..++.-|... |..|++.... +.++.+.+++||+||.
T Consensus 154 i~l~G-k~vvViGrs~iVGkPla~lL~~~------~atVt~~hs~-------------------t~~l~~~~~~ADIVV~ 207 (285)
T PRK14189 154 IPLRG-AHAVVIGRSNIVGKPMAMLLLQA------GATVTICHSK-------------------TRDLAAHTRQADIVVA 207 (285)
T ss_pred CCCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEecCC-------------------CCCHHHHhhhCCEEEE
Confidence 35789 99999999988 99999999988 8888764321 2467788999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
+++-.. ++.. .++|+|++|++++
T Consensus 208 avG~~~---~i~~--~~ik~gavVIDVG 230 (285)
T PRK14189 208 AVGKRN---VLTA--DMVKPGATVIDVG 230 (285)
T ss_pred cCCCcC---ccCH--HHcCCCCEEEEcc
Confidence 999433 3432 6789999888654
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0025 Score=56.92 Aligned_cols=67 Identities=18% Similarity=0.205 Sum_probs=45.9
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhHHHHHHc-------CceecCCCcCCHHhhcCcCCE
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA-------GFTEENGTLGDIYETISGSDL 181 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~~~A~~~-------G~~~~~~~~~s~~Ea~~~ADI 181 (417)
+||+|||. |+.|.++|..|... ++ ++.+.++...+....+.+. +... ....+..+.+++||+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~------~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~--~i~~~~~~~~~~aDi 72 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQ------GLADEIVLIDINEDKAEGEALDLSHASAPLPSPV--RITSGDYEALKDADI 72 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHT------TTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEE--EEEESSGGGGTTESE
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCCceEEeccCcccceeeehhhhhhhhhccccc--ccccccccccccccE
Confidence 59999999 99999999999988 65 6776766644333333321 1110 002245678899999
Q ss_pred EEEcc
Q 014834 182 VLLLI 186 (417)
Q Consensus 182 ViLav 186 (417)
|+++.
T Consensus 73 vvita 77 (141)
T PF00056_consen 73 VVITA 77 (141)
T ss_dssp EEETT
T ss_pred EEEec
Confidence 99986
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >TIGR00745 apbA_panE 2-dehydropantoate 2-reductase | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.012 Score=57.16 Aligned_cols=87 Identities=15% Similarity=0.176 Sum_probs=62.5
Q ss_pred chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecC--C--------CcCCHHhhcCcCCEEEEccCCch
Q 014834 121 SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN--G--------TLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 121 ~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~--~--------~~~s~~Ea~~~ADIViLavpd~~ 190 (417)
.||..+|..|.++ |++|.+..|. +..+.-++.|+...+ + ...++++ ....|+||++||-.+
T Consensus 1 aiG~~~a~~L~~~------G~~V~l~~r~--~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vKs~~ 71 (293)
T TIGR00745 1 AVGSLYGAYLARA------GHDVTLLARG--EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITVKAYQ 71 (293)
T ss_pred CchHHHHHHHHhC------CCcEEEEecH--HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEeccchh
Confidence 3788999999998 9999888774 334444556754311 1 0112344 568999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEE-EecCchh
Q 014834 191 QADNYEKIFSCMKPNSILG-LSHGFLL 216 (417)
Q Consensus 191 ~~~Vl~eI~~~lk~gaiLi-~a~G~~i 216 (417)
..++++.+.+++.++++|+ +.-|+..
T Consensus 72 ~~~~l~~l~~~l~~~~~iv~~qNG~g~ 98 (293)
T TIGR00745 72 TEEAAALLLPLIGKNTKVLFLQNGLGH 98 (293)
T ss_pred HHHHHHHhHhhcCCCCEEEEccCCCCC
Confidence 9999999999999888655 5668753
|
This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH |
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0028 Score=64.04 Aligned_cols=69 Identities=19% Similarity=0.159 Sum_probs=45.4
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHH-------cC--ceecCCCcCCHHhhcC
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA-------AG--FTEENGTLGDIYETIS 177 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~-------~G--~~~~~~~~~s~~Ea~~ 177 (417)
.+. +||+|||.|+||.+++..|... |+ ++.+.+.+.+.....+.+ .+ ... ....+.+ +++
T Consensus 3 ~~~-~KI~IIGaG~vG~~ia~~l~~~------~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i--~~~~d~~-~l~ 72 (319)
T PTZ00117 3 VKR-KKISMIGAGQIGSTVALLILQK------NLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINI--LGTNNYE-DIK 72 (319)
T ss_pred CCC-cEEEEECCCHHHHHHHHHHHHC------CCCeEEEEECCCccchhHHHHHhhhccccCCCeEE--EeCCCHH-HhC
Confidence 355 7999999999999999999887 74 766666654322221111 11 111 0023555 779
Q ss_pred cCCEEEEcc
Q 014834 178 GSDLVLLLI 186 (417)
Q Consensus 178 ~ADIViLav 186 (417)
+||+||++.
T Consensus 73 ~ADiVVita 81 (319)
T PTZ00117 73 DSDVVVITA 81 (319)
T ss_pred CCCEEEECC
Confidence 999999998
|
|
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0011 Score=67.03 Aligned_cols=88 Identities=22% Similarity=0.266 Sum_probs=61.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHc----CceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~----G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
++|+|||+|.||.+++..+.... ++ +|.+++|+.++..+.+++. |+.. ..+.+.++++.++|+|+.+|
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~-----~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v--~~~~d~~~al~~aDiVi~aT 205 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVR-----PIREVRVWARDAAKAEAYAADLRAELGIPV--TVARDVHEAVAGADIIVTTT 205 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC-----CCCEEEEEcCCHHHHHHHHHHHhhccCceE--EEeCCHHHHHccCCEEEEee
Confidence 89999999999999999998630 44 7888888766655555532 4431 11467889999999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEE
Q 014834 187 SDAAQADNYEKIFSCMKPNSILGL 210 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiLi~ 210 (417)
|... .+++. ..+++|+.|..
T Consensus 206 ~s~~--p~i~~--~~l~~g~~v~~ 225 (330)
T PRK08291 206 PSEE--PILKA--EWLHPGLHVTA 225 (330)
T ss_pred CCCC--cEecH--HHcCCCceEEe
Confidence 8643 23322 23678876653
|
|
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0013 Score=69.99 Aligned_cols=74 Identities=15% Similarity=0.171 Sum_probs=53.4
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
.+++ ++++|||.|.+|.+++..|.+. |.+|++.+|...+..+.+...+.... ...+.. .+.++|+||.|+
T Consensus 329 ~~~~-k~vlIiGaGgiG~aia~~L~~~------G~~V~i~~R~~~~~~~la~~~~~~~~--~~~~~~-~l~~~DiVInat 398 (477)
T PRK09310 329 PLNN-QHVAIVGAGGAAKAIATTLARA------GAELLIFNRTKAHAEALASRCQGKAF--PLESLP-ELHRIDIIINCL 398 (477)
T ss_pred CcCC-CEEEEEcCcHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHhcccee--chhHhc-ccCCCCEEEEcC
Confidence 4567 8999999999999999999998 99888888875554445544432210 011222 257899999999
Q ss_pred CCch
Q 014834 187 SDAA 190 (417)
Q Consensus 187 pd~~ 190 (417)
|+..
T Consensus 399 P~g~ 402 (477)
T PRK09310 399 PPSV 402 (477)
T ss_pred CCCC
Confidence 9875
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0016 Score=67.73 Aligned_cols=79 Identities=18% Similarity=0.157 Sum_probs=58.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCC-cEEEEEecCChhhHHHHHHcC---cee--cCC-CcCCHHhhcCcCCEEE
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAG---FTE--ENG-TLGDIYETISGSDLVL 183 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G-~~ViVg~r~~s~s~~~A~~~G---~~~--~~~-~~~s~~Ea~~~ADIVi 183 (417)
|++|-|||+|.+|.+.|..|.++ | .+|++.+|+.++.. ++.+.. +.. .|- ......+++++.|+||
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~------~d~~V~iAdRs~~~~~-~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VI 73 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQN------GDGEVTIADRSKEKCA-RIAELIGGKVEALQVDAADVDALVALIKDFDLVI 73 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhC------CCceEEEEeCCHHHHH-HHHhhccccceeEEecccChHHHHHHHhcCCEEE
Confidence 68999999999999999999988 7 79999999755433 333332 211 010 1123568899999999
Q ss_pred EccCCchHHHHHH
Q 014834 184 LLISDAAQADNYE 196 (417)
Q Consensus 184 Lavpd~~~~~Vl~ 196 (417)
.|.|+.....+++
T Consensus 74 n~~p~~~~~~i~k 86 (389)
T COG1748 74 NAAPPFVDLTILK 86 (389)
T ss_pred EeCCchhhHHHHH
Confidence 9999998887775
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0062 Score=51.28 Aligned_cols=94 Identities=22% Similarity=0.198 Sum_probs=62.1
Q ss_pred EEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHh----hcCcCCEEEEccCCc
Q 014834 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE----TISGSDLVLLLISDA 189 (417)
Q Consensus 114 IgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~E----a~~~ADIViLavpd~ 189 (417)
|-|||+|.+|..+++.|++. +.+|++.++. ....+.+++.|+....|...+.+. -++++|.|++++++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~------~~~vvvid~d-~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d 73 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG------GIDVVVIDRD-PERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDD 73 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT------TSEEEEEESS-HHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSH
T ss_pred eEEEcCCHHHHHHHHHHHhC------CCEEEEEECC-cHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCH
Confidence 57999999999999999998 8787766554 455778888886654333334322 368899999999987
Q ss_pred hHHHHH-HHHHhcCCCCcEEEEecCc
Q 014834 190 AQADNY-EKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 190 ~~~~Vl-~eI~~~lk~gaiLi~a~G~ 214 (417)
...-.+ ..+........++..+..-
T Consensus 74 ~~n~~~~~~~r~~~~~~~ii~~~~~~ 99 (116)
T PF02254_consen 74 EENLLIALLARELNPDIRIIARVNDP 99 (116)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEESSH
T ss_pred HHHHHHHHHHHHHCCCCeEEEEECCH
Confidence 664333 3343333334455555543
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0038 Score=60.05 Aligned_cols=82 Identities=21% Similarity=0.147 Sum_probs=58.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHH-HHHcCceecCCCcCC---HHhh-cCcCCEEEEcc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-ARAAGFTEENGTLGD---IYET-ISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~-A~~~G~~~~~~~~~s---~~Ea-~~~ADIViLav 186 (417)
|+|.|||+|..|..+|+.|.+. |++|++.++..++..+. +.+.+.....+...+ ++++ +.++|+++.++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~------g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t 74 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE------GHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAAT 74 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC------CCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEee
Confidence 6899999999999999999999 99988777765543332 323443321111122 4455 88999999999
Q ss_pred CCchHHHHHHHHH
Q 014834 187 SDAAQADNYEKIF 199 (417)
Q Consensus 187 pd~~~~~Vl~eI~ 199 (417)
....+.-++-.+.
T Consensus 75 ~~d~~N~i~~~la 87 (225)
T COG0569 75 GNDEVNSVLALLA 87 (225)
T ss_pred CCCHHHHHHHHHH
Confidence 9988887776654
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0029 Score=65.80 Aligned_cols=91 Identities=16% Similarity=0.161 Sum_probs=62.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec--------------CC---CcCCHHh
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--------------NG---TLGDIYE 174 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~--------------~~---~~~s~~E 174 (417)
|||.|||.|-.|...+..|.+. |++|+..+.. +...+. ...|..+. ++ .+.|.++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~------GHeVv~vDid-~~KV~~-ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~ 72 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAEL------GHEVVCVDID-ESKVEL-LNKGISPIYEPGLEELLKENLASGRLRFTTDYEE 72 (414)
T ss_pred CceEEECCchHHHHHHHHHHHc------CCeEEEEeCC-HHHHHH-HhCCCCCCcCccHHHHHHhccccCcEEEEcCHHH
Confidence 6899999999999999999999 9998655443 322222 12222110 01 1467889
Q ss_pred hcCcCCEEEEccCCch----------HHHHHHHHHhcCCCCcEEEE
Q 014834 175 TISGSDLVLLLISDAA----------QADNYEKIFSCMKPNSILGL 210 (417)
Q Consensus 175 a~~~ADIViLavpd~~----------~~~Vl~eI~~~lk~gaiLi~ 210 (417)
+++++|++|||||... +..+.++|.++++..++|+.
T Consensus 73 a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~ 118 (414)
T COG1004 73 AVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVI 118 (414)
T ss_pred HHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 9999999999987321 12466689999977676653
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0039 Score=62.58 Aligned_cols=70 Identities=19% Similarity=0.191 Sum_probs=45.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhHHHHHHc--Cceec---CCCcCCHHhhcCcCCEEEE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--GFTEE---NGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~~~A~~~--G~~~~---~~~~~s~~Ea~~~ADIViL 184 (417)
+||+|||.|.+|.++|..|... |+ +|.+.++...+....+.+. ..... .-...+. +.+++||+||+
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~------g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiVii 73 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLR------GLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVI 73 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHc------CCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEE
Confidence 4899999999999999999988 84 6777776543322222221 11000 0001344 56899999999
Q ss_pred ccCC
Q 014834 185 LISD 188 (417)
Q Consensus 185 avpd 188 (417)
+.+.
T Consensus 74 ta~~ 77 (308)
T cd05292 74 TAGA 77 (308)
T ss_pred ccCC
Confidence 9874
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0034 Score=51.14 Aligned_cols=66 Identities=18% Similarity=0.200 Sum_probs=48.3
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..+++ ++++|+|+|.||.+++..|.+. +. +|.+++| |++|-
T Consensus 19 ~~~~~-~~v~i~G~G~~g~~~a~~l~~~------~~~~v~v~~r-------------------------------di~i~ 60 (86)
T cd05191 19 KSLKG-KTVVVLGAGEVGKGIAKLLADE------GGKKVVLCDR-------------------------------DILVT 60 (86)
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEEcC-------------------------------CEEEE
Confidence 34677 9999999999999999999987 53 5665544 99999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
+++...... ++....++++.+|++.
T Consensus 61 ~~~~~~~~~--~~~~~~~~~~~~v~~~ 85 (86)
T cd05191 61 ATPAGVPVL--EEATAKINEGAVVIDL 85 (86)
T ss_pred cCCCCCCch--HHHHHhcCCCCEEEec
Confidence 998654421 2234456788877643
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0042 Score=64.42 Aligned_cols=78 Identities=18% Similarity=0.157 Sum_probs=54.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH-cCceecCCCcCC---HHhh-cCcCCEEEEcc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLGD---IYET-ISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~-~G~~~~~~~~~s---~~Ea-~~~ADIViLav 186 (417)
|+|.|||+|.+|..+++.|++. |++|++.+++... .+.+++ .|+....+...+ .+++ ++++|.|++++
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~------g~~v~vid~~~~~-~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~ 73 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGE------NNDVTVIDTDEER-LRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVT 73 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCcEEEEECCHHH-HHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEec
Confidence 5899999999999999999998 9988777665433 444433 454321111122 3445 78999999999
Q ss_pred CCchHHHHHH
Q 014834 187 SDAAQADNYE 196 (417)
Q Consensus 187 pd~~~~~Vl~ 196 (417)
++......+.
T Consensus 74 ~~~~~n~~~~ 83 (453)
T PRK09496 74 DSDETNMVAC 83 (453)
T ss_pred CChHHHHHHH
Confidence 9876654443
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0039 Score=59.09 Aligned_cols=85 Identities=12% Similarity=0.080 Sum_probs=58.1
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcC-ceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G-~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
-.++| ++|.|||.|.+|...++.|.+. |.+|+|..+.-.+........| +..... ... ++.+.++|+||.
T Consensus 6 l~l~~-k~vLVIGgG~va~~ka~~Ll~~------ga~V~VIs~~~~~~l~~l~~~~~i~~~~~-~~~-~~~l~~adlVia 76 (202)
T PRK06718 6 IDLSN-KRVVIVGGGKVAGRRAITLLKY------GAHIVVISPELTENLVKLVEEGKIRWKQK-EFE-PSDIVDAFLVIA 76 (202)
T ss_pred EEcCC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEcCCCCHHHHHHHhCCCEEEEec-CCC-hhhcCCceEEEE
Confidence 46889 9999999999999999999999 8888877654333322222233 322111 111 345788999999
Q ss_pred ccCCchHHHHHHHHH
Q 014834 185 LISDAAQADNYEKIF 199 (417)
Q Consensus 185 avpd~~~~~Vl~eI~ 199 (417)
+|.+......+.+..
T Consensus 77 aT~d~elN~~i~~~a 91 (202)
T PRK06718 77 ATNDPRVNEQVKEDL 91 (202)
T ss_pred cCCCHHHHHHHHHHH
Confidence 999988876554443
|
|
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.003 Score=54.75 Aligned_cols=86 Identities=16% Similarity=0.128 Sum_probs=57.8
Q ss_pred CEEEEEc----ccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccC
Q 014834 112 NQIGVIG----WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG----~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavp 187 (417)
|+|+||| -+..|.-+.++|++. |++|+-.+.+... -.|... ..+++|.-...|++++++|
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~------G~~v~~Vnp~~~~------i~G~~~----y~sl~e~p~~iDlavv~~~ 64 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAA------GYEVYPVNPKGGE------ILGIKC----YPSLAEIPEPIDLAVVCVP 64 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHT------T-EEEEESTTCSE------ETTEE-----BSSGGGCSST-SEEEE-S-
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhC------CCEEEEECCCceE------ECcEEe----eccccCCCCCCCEEEEEcC
Confidence 6899999 688899999999998 9887655443211 146554 6788884488999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
+....++++++... ..+.+++..+..
T Consensus 65 ~~~~~~~v~~~~~~-g~~~v~~~~g~~ 90 (116)
T PF13380_consen 65 PDKVPEIVDEAAAL-GVKAVWLQPGAE 90 (116)
T ss_dssp HHHHHHHHHHHHHH-T-SEEEE-TTS-
T ss_pred HHHHHHHHHHHHHc-CCCEEEEEcchH
Confidence 99999999987653 344455555543
|
|
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0051 Score=60.99 Aligned_cols=91 Identities=20% Similarity=0.145 Sum_probs=59.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCh-hhHHHHHHcCceecCCCcCCHHhh-cCcCCEEEEccCCc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s-~s~~~A~~~G~~~~~~~~~s~~Ea-~~~ADIViLavpd~ 189 (417)
+||||||||.||..++..|.... ..++++...+++.. +..+.+ ..... +.+++++ ..+.|+|+=|-+++
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~---~~~~~l~~V~~~~~~~~~~~~--~~~~~----~~~l~~ll~~~~DlVVE~A~~~ 73 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADA---AQPCQLAALTRNAADLPPALA--GRVAL----LDGLPGLLAWRPDLVVEAAGQQ 73 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCC---CCceEEEEEecCCHHHHHHhh--ccCcc----cCCHHHHhhcCCCEEEECCCHH
Confidence 69999999999999999987530 00244433344432 222222 22333 6789996 68899999999988
Q ss_pred hHHHHHHHHHhcCCCCc-EEEEecCc
Q 014834 190 AQADNYEKIFSCMKPNS-ILGLSHGF 214 (417)
Q Consensus 190 ~~~~Vl~eI~~~lk~ga-iLi~a~G~ 214 (417)
+..+..+.+.. .|. +++.+-|.
T Consensus 74 av~e~~~~iL~---~g~dlvv~SvGA 96 (267)
T PRK13301 74 AIAEHAEGCLT---AGLDMIICSAGA 96 (267)
T ss_pred HHHHHHHHHHh---cCCCEEEEChhH
Confidence 88887776643 344 45555554
|
|
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0026 Score=67.14 Aligned_cols=87 Identities=18% Similarity=0.201 Sum_probs=67.8
Q ss_pred CEEEEEcc----cchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 112 kkIgIIG~----G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
++|+|||. |+.|.-+.++|++. |+ +|+..+.+. . .-.|+.. ..+++|+-...|+++++
T Consensus 8 ~siavvGaS~~~~~~g~~~~~~l~~~------gf~g~v~~Vnp~~-~-----~i~G~~~----~~sl~~lp~~~Dlavi~ 71 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGYAIMKNLIEG------GYKGKIYPVNPKA-G-----EILGVKA----YPSVLEIPDPVDLAVIV 71 (447)
T ss_pred CEEEEEccCCCCCchHHHHHHHHHhC------CCCCcEEEECCCC-C-----ccCCccc----cCCHHHCCCCCCEEEEe
Confidence 89999999 88999999999998 87 554333321 1 2357764 66888888888999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEecCch
Q 014834 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 186 vpd~~~~~Vl~eI~~~lk~gaiLi~a~G~~ 215 (417)
+|+....++++++.. ..-..+|++++||.
T Consensus 72 vp~~~~~~~l~e~~~-~gv~~~vi~s~gf~ 100 (447)
T TIGR02717 72 VPAKYVPQVVEECGE-KGVKGAVVITAGFK 100 (447)
T ss_pred cCHHHHHHHHHHHHh-cCCCEEEEECCCcc
Confidence 999999999988655 34456788999985
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0048 Score=62.33 Aligned_cols=126 Identities=21% Similarity=0.155 Sum_probs=87.0
Q ss_pred cccccccchHhhhhhcccchhhhcccccccccchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCh
Q 014834 72 LDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (417)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~e~~vr~g~~~f~~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s 151 (417)
.+-|-++-+.|--+|-|-.|-++-+= ... --.-+.| |.+.|.|||..|..-|+.||.. |..|+|.....-
T Consensus 179 iNVNDSVTKsKFDnLygcreSl~Dgi--kra-TDvM~aG-Kv~Vv~GYGdVGKgCaqaLkg~------g~~VivTEiDPI 248 (434)
T KOG1370|consen 179 INVNDSVTKSKFDNLYGCRESLLDGI--KRA-TDVMIAG-KVAVVCGYGDVGKGCAQALKGF------GARVIVTEIDPI 248 (434)
T ss_pred eeccchhhhhhccccccchhhhhhhh--hhh-hhheecc-cEEEEeccCccchhHHHHHhhc------CcEEEEeccCch
Confidence 55666776666666666555432200 011 1134566 8888999999999999999988 888888754432
Q ss_pred hhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEecCch
Q 014834 152 RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 152 ~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~G~~ 215 (417)
.. -.|.-.|+. +.+++|+++++||++.++-...+ +..+.+..||.++||.-.+=|.
T Consensus 249 ~A-LQAaMeG~~-----V~tm~ea~~e~difVTtTGc~di--i~~~H~~~mk~d~IvCN~Ghfd 304 (434)
T KOG1370|consen 249 CA-LQAAMEGYE-----VTTLEEAIREVDIFVTTTGCKDI--ITGEHFDQMKNDAIVCNIGHFD 304 (434)
T ss_pred HH-HHHHhhccE-----eeeHHHhhhcCCEEEEccCCcch--hhHHHHHhCcCCcEEecccccc
Confidence 33 334456888 57899999999999999876544 3346677899999988555443
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0054 Score=62.14 Aligned_cols=66 Identities=23% Similarity=0.217 Sum_probs=43.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhh----HHHHHH---cC--ceecCCCcCCHHhhcCcCCE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRS----FAEARA---AG--FTEENGTLGDIYETISGSDL 181 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s----~~~A~~---~G--~~~~~~~~~s~~Ea~~~ADI 181 (417)
+||+|||.|+||.++|..+... |+ ++++.+...+.. .+.... .+ .... ...+. +.+++||+
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~------gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~--~~~d~-~~l~~aDi 77 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLK------NLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVI--GTNNY-EDIAGSDV 77 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEE--ECCCH-HHhCCCCE
Confidence 7999999999999999998887 76 766666544322 111111 11 1110 12455 57899999
Q ss_pred EEEcc
Q 014834 182 VLLLI 186 (417)
Q Consensus 182 ViLav 186 (417)
||++.
T Consensus 78 VI~ta 82 (321)
T PTZ00082 78 VIVTA 82 (321)
T ss_pred EEECC
Confidence 99965
|
|
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.002 Score=66.71 Aligned_cols=90 Identities=20% Similarity=0.181 Sum_probs=62.6
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHc-----C---ceecCCCcCCHHhhcCcCC
Q 014834 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA-----G---FTEENGTLGDIYETISGSD 180 (417)
Q Consensus 110 gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~-----G---~~~~~~~~~s~~Ea~~~AD 180 (417)
+-++++|||+|.||..+++.+..-. ..+ +|.|++|..++..+.+.+. | +.+ +.+.+|++++||
T Consensus 154 da~~l~iiG~G~QA~~~l~a~~~v~----~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~----~~s~~eav~~AD 225 (379)
T PRK06199 154 DSKVVGLLGPGVMGKTILAAFMAVC----PGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEV----VDSIEEVVRGSD 225 (379)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhc----CCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEE----eCCHHHHHcCCC
Confidence 4489999999999999999987641 023 7888888866554444332 3 332 578999999999
Q ss_pred EEEEccCCchH----HHHHHHHHhcCCCCcEEE
Q 014834 181 LVLLLISDAAQ----ADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 181 IViLavpd~~~----~~Vl~eI~~~lk~gaiLi 209 (417)
||+.+|+.... ..+++ ...++||+.|.
T Consensus 226 IVvtaT~s~~~~~s~~Pv~~--~~~lkpG~hv~ 256 (379)
T PRK06199 226 IVTYCNSGETGDPSTYPYVK--REWVKPGAFLL 256 (379)
T ss_pred EEEEccCCCCCCCCcCcEec--HHHcCCCcEEe
Confidence 99999974321 12332 23578998765
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0021 Score=63.80 Aligned_cols=77 Identities=13% Similarity=0.031 Sum_probs=55.9
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcCceecCCCcC---CHHhhcCcCCEE
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETISGSDLV 182 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G~~~~~~~~~---s~~Ea~~~ADIV 182 (417)
.++| +++.|||.|-+|.+++..|.+. |. +|.|.+|+.++..+.+.+.+....-.... +..+.+.++|+|
T Consensus 122 ~~~~-k~vlvlGaGGaarai~~aL~~~------G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiV 194 (282)
T TIGR01809 122 PLAG-FRGLVIGAGGTSRAAVYALASL------GVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVL 194 (282)
T ss_pred ccCC-ceEEEEcCcHHHHHHHHHHHHc------CCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEE
Confidence 3577 8999999999999999999998 87 78899998777666666543210000011 233556889999
Q ss_pred EEccCCch
Q 014834 183 LLLISDAA 190 (417)
Q Consensus 183 iLavpd~~ 190 (417)
|.+||...
T Consensus 195 InaTp~g~ 202 (282)
T TIGR01809 195 VSTVPADV 202 (282)
T ss_pred EECCCCCC
Confidence 99999754
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0014 Score=54.64 Aligned_cols=90 Identities=14% Similarity=0.211 Sum_probs=55.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCc--CCEEEEccCCc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~--ADIViLavpd~ 189 (417)
.+|.|+|+|+.|.+++..+.+. . |+.+....+.+.+..- .+-.|+.+ ..+++++.+. .|+-+|++|+.
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~---~--g~~i~~~~dv~~~~~G-~~i~gipV----~~~~~~l~~~~~i~iaii~VP~~ 73 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSM---R--GFGIVAVFDVDPEKIG-KEIGGIPV----YGSMDELEEFIEIDIAIITVPAE 73 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHH---H--CECEEEEEEECTTTTT-SEETTEEE----ESSHHHHHHHCTTSEEEEES-HH
T ss_pred CeEEEECCCCcHHHHHHhHHHH---c--CCCCEEEEEcCCCccC-cEECCEEe----eccHHHhhhhhCCCEEEEEcCHH
Confidence 5899999999999999766654 2 5543333332222111 01135554 3477776665 99999999998
Q ss_pred hHHHHHHHHHh-cCCCCcEEEEecC
Q 014834 190 AQADNYEKIFS-CMKPNSILGLSHG 213 (417)
Q Consensus 190 ~~~~Vl~eI~~-~lk~gaiLi~a~G 213 (417)
...++..++.. .+|. ++.++.|
T Consensus 74 ~a~~~~~~~~~~gIk~--i~nft~~ 96 (96)
T PF02629_consen 74 AAQEVADELVEAGIKG--IVNFTPG 96 (96)
T ss_dssp HHHHHHHHHHHTT-SE--EEEESSS
T ss_pred HHHHHHHHHHHcCCCE--EEEeCCC
Confidence 88887776543 3432 5556543
|
; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D .... |
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0029 Score=63.11 Aligned_cols=76 Identities=13% Similarity=0.196 Sum_probs=58.0
Q ss_pred hhccCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~-mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| |+|.|||.|. .|.+++..|.+. |..|.+.+++ ..++.+.+++||+||.
T Consensus 155 i~l~G-k~vvViG~gg~vGkpia~~L~~~------gatVtv~~~~-------------------t~~L~~~~~~aDIvI~ 208 (283)
T PRK14192 155 IELAG-KHAVVVGRSAILGKPMAMMLLNA------NATVTICHSR-------------------TQNLPELVKQADIIVG 208 (283)
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHHHhC------CCEEEEEeCC-------------------chhHHHHhccCCEEEE
Confidence 46889 9999999998 999999999988 8888877652 1245566789999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
+++... .+. .+.+++|++|+++.
T Consensus 209 AtG~~~---~v~--~~~lk~gavViDvg 231 (283)
T PRK14192 209 AVGKPE---LIK--KDWIKQGAVVVDAG 231 (283)
T ss_pred ccCCCC---cCC--HHHcCCCCEEEEEE
Confidence 996222 232 24578999888653
|
|
| >PRK11579 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0074 Score=61.01 Aligned_cols=76 Identities=11% Similarity=0.142 Sum_probs=50.8
Q ss_pred CEEEEEcccchHH-HHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHc-CceecCCCcCCHHhhcC--cCCEEEEccC
Q 014834 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETIS--GSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~-AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~-G~~~~~~~~~s~~Ea~~--~ADIViLavp 187 (417)
.||||||+|.+|. .++..+... .+++++...+.+... .+.+. +... ..+.+|+++ +.|+|++++|
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~-----~~~~l~av~d~~~~~--~~~~~~~~~~----~~~~~ell~~~~vD~V~I~tp 73 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGT-----PGLELAAVSSSDATK--VKADWPTVTV----VSEPQHLFNDPNIDLIVIPTP 73 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhC-----CCCEEEEEECCCHHH--HHhhCCCCce----eCCHHHHhcCCCCCEEEEcCC
Confidence 4899999999998 466766654 156665333333221 12233 3322 578999985 5799999999
Q ss_pred CchHHHHHHHH
Q 014834 188 DAAQADNYEKI 198 (417)
Q Consensus 188 d~~~~~Vl~eI 198 (417)
+..+.++....
T Consensus 74 ~~~H~~~~~~a 84 (346)
T PRK11579 74 NDTHFPLAKAA 84 (346)
T ss_pred cHHHHHHHHHH
Confidence 99998877654
|
|
| >PRK10206 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0062 Score=61.90 Aligned_cols=82 Identities=12% Similarity=0.162 Sum_probs=52.2
Q ss_pred CCEEEEEcccchHH-HHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcC--cCCEEEEccC
Q 014834 111 INQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (417)
Q Consensus 111 mkkIgIIG~G~mG~-AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~--~ADIViLavp 187 (417)
|-||||||+|.++. .++..+.... .++++....+.+.+..+.+.+.+... ...+.+|+++ +.|+|++++|
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~~----~~~~l~av~d~~~~~~~~~~~~~~~~---~~~~~~ell~~~~iD~V~I~tp 73 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNRK----DSWHVAHIFRRHAKPEEQAPIYSHIH---FTSDLDEVLNDPDVKLVVVCTH 73 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcCC----CCEEEEEEEcCChhHHHHHHhcCCCc---ccCCHHHHhcCCCCCEEEEeCC
Confidence 35899999999764 4455553320 04565433333333335555565321 1568999985 5799999999
Q ss_pred CchHHHHHHHHH
Q 014834 188 DAAQADNYEKIF 199 (417)
Q Consensus 188 d~~~~~Vl~eI~ 199 (417)
+..+.++..+..
T Consensus 74 ~~~H~~~~~~al 85 (344)
T PRK10206 74 ADSHFEYAKRAL 85 (344)
T ss_pred chHHHHHHHHHH
Confidence 999988776543
|
|
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0077 Score=61.53 Aligned_cols=95 Identities=13% Similarity=0.113 Sum_probs=58.8
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEE-EEecCChhhHHHHHHcCceec--CCCc--CCHHhhcCcCCEEEEc
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEE--NGTL--GDIYETISGSDLVLLL 185 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~--~~~~--~s~~Ea~~~ADIViLa 185 (417)
+||+|||. |.+|..+++.|.+. .+++++ +..++.+.........+.... +-.+ .+.++..+++|+||+|
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~h-----P~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~a 75 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNH-----PEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLA 75 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC-----CCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEEC
Confidence 48999998 99999999999864 134555 323221111111111221000 0001 2456666789999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 186 vpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
+|.....++..++.. .|..|++.++.
T Consensus 76 lP~~~s~~~~~~~~~---~G~~VIDlS~~ 101 (346)
T TIGR01850 76 LPHGVSAELAPELLA---AGVKVIDLSAD 101 (346)
T ss_pred CCchHHHHHHHHHHh---CCCEEEeCChh
Confidence 999988888877643 57878877663
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.006 Score=60.72 Aligned_cols=64 Identities=30% Similarity=0.284 Sum_probs=41.2
Q ss_pred EEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHH---Hc----C--ceecCCCcCCHHhhcCcCCEEE
Q 014834 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR---AA----G--FTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 114 IgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~---~~----G--~~~~~~~~~s~~Ea~~~ADIVi 183 (417)
|+|||.|+||..+|..|... |+ +|++.+...+.....+. .. + ... ....+. +.+++||+||
T Consensus 1 I~IIGaG~vG~~ia~~la~~------~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I--~~t~d~-~~l~dADiVI 71 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALK------ELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKV--TGTNDY-EDIAGSDVVV 71 (300)
T ss_pred CEEECCCHHHHHHHHHHHhC------CCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEE--EEcCCH-HHhCCCCEEE
Confidence 68999999999999999877 66 88777765432211111 11 1 011 012344 5689999999
Q ss_pred Ecc
Q 014834 184 LLI 186 (417)
Q Consensus 184 Lav 186 (417)
++.
T Consensus 72 it~ 74 (300)
T cd01339 72 ITA 74 (300)
T ss_pred Eec
Confidence 976
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0063 Score=60.90 Aligned_cols=76 Identities=17% Similarity=0.144 Sum_probs=59.3
Q ss_pred hhccCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~-mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| |+|.|||.|. .|.+++.-|.+. |..|++..+. +.++++.+++||+||.
T Consensus 155 i~l~G-k~vvViGrs~iVG~Pla~lL~~~------~atVtv~hs~-------------------T~~l~~~~~~ADIvi~ 208 (285)
T PRK10792 155 IDTYG-LNAVVVGASNIVGRPMSLELLLA------GCTVTVCHRF-------------------TKNLRHHVRNADLLVV 208 (285)
T ss_pred CCCCC-CEEEEECCCcccHHHHHHHHHHC------CCeEEEEECC-------------------CCCHHHHHhhCCEEEE
Confidence 46889 9999999998 999999999988 8888877542 1367888999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
++.-... +. ..++++|++|++++
T Consensus 209 avG~p~~---v~--~~~vk~gavVIDvG 231 (285)
T PRK10792 209 AVGKPGF---IP--GEWIKPGAIVIDVG 231 (285)
T ss_pred cCCCccc---cc--HHHcCCCcEEEEcc
Confidence 9953222 21 15678999888754
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0067 Score=61.46 Aligned_cols=143 Identities=20% Similarity=0.099 Sum_probs=86.0
Q ss_pred cccccccccchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec--CCCcCCH
Q 014834 95 RGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGTLGDI 172 (417)
Q Consensus 95 r~g~~~f~~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~--~~~~~s~ 172 (417)
++|+--+--+.-.... -||.|||.|-.|..-|+-...- |-+|.+.+++..+....-...+.... -.+...+
T Consensus 153 ~GG~GvllgGvpGV~~-~kv~iiGGGvvgtnaAkiA~gl------gA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~i 225 (371)
T COG0686 153 NGGKGVLLGGVPGVLP-AKVVVLGGGVVGTNAAKIAIGL------GADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNI 225 (371)
T ss_pred cCCceeEecCCCCCCC-ccEEEECCccccchHHHHHhcc------CCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHH
Confidence 4444444433222233 5899999999999988866654 77999988775554443333443311 1122357
Q ss_pred HhhcCcCCEEEEc--cCCchHHH-HHHHHHhcCCCCcEEEEec----Cc-hhhhhhhcccCCC---CCccEEEeccCCCc
Q 014834 173 YETISGSDLVLLL--ISDAAQAD-NYEKIFSCMKPNSILGLSH----GF-LLGHLQSIGLDFP---KNIGVIAVCPKGMG 241 (417)
Q Consensus 173 ~Ea~~~ADIViLa--vpd~~~~~-Vl~eI~~~lk~gaiLi~a~----G~-~i~~~~~~~i~~~---~dv~VI~v~Pntpg 241 (417)
+|.+.++|+||-+ +|-...+. +.++....||||++|++.+ |. ...+.. .-.-| ++--+--+-||+|+
T Consensus 226 ee~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivDVAiDqGGc~Et~~~T--Th~~PtY~~~gvvhY~VaNmPg 303 (371)
T COG0686 226 EEAVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDVAIDQGGCFETSHPT--THDDPTYEVDGVVHYGVANMPG 303 (371)
T ss_pred HHHhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEEEEEEcCCCceeccccc--cCCCCceeecCEEEEecCCCCc
Confidence 8999999999975 55555565 4457888999999988554 42 111110 00101 11123346799999
Q ss_pred hhHHH
Q 014834 242 PSVRR 246 (417)
Q Consensus 242 ~~vr~ 246 (417)
.+-|.
T Consensus 304 aVprT 308 (371)
T COG0686 304 AVPRT 308 (371)
T ss_pred cccch
Confidence 98543
|
|
| >KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.12 Score=50.65 Aligned_cols=214 Identities=12% Similarity=0.144 Sum_probs=127.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChh----------hHHHHHHcCceec----------CCCcCC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----------SFAEARAAGFTEE----------NGTLGD 171 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~----------s~~~A~~~G~~~~----------~~~~~s 171 (417)
.||+|+|-|..|+++|.-+..+ |++|..++...++ ..++.++.|.-.. -+.+.+
T Consensus 4 ~ki~ivgSgl~g~~WAmlFAs~------GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~ 77 (313)
T KOG2305|consen 4 GKIAIVGSGLVGSSWAMLFASS------GYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTS 77 (313)
T ss_pred cceeEeecccccchHHHHHhcc------CceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCcc
Confidence 5899999999999999999988 9999887765331 1222233333210 023568
Q ss_pred HHhhcCcCCEEEEccCCchH--HHHHHHHHhcCCCCcEEEEecC-chhhhhhhcccCCCCCccEEEeccCCCchhHHHHH
Q 014834 172 IYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILGLSHG-FLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (417)
Q Consensus 172 ~~Ea~~~ADIViLavpd~~~--~~Vl~eI~~~lk~gaiLi~a~G-~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly 248 (417)
+.|++++|=.|-=|+|..-. ..+|.++-..+.|.+||.-+.. |....+-. .+-+.-.++.+||--|-.-+.
T Consensus 78 l~E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~---gL~~k~q~lvaHPvNPPyfiP--- 151 (313)
T KOG2305|consen 78 LNELVKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSA---GLINKEQCLVAHPVNPPYFIP--- 151 (313)
T ss_pred HHHHHhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhh---hhhhhhheeEecCCCCCcccc---
Confidence 99999999888889996554 3577766666667666653322 22222211 112234688899966654310
Q ss_pred hhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhh-hccccchhhhchHHHHHH------HHH
Q 014834 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKS-DIFGERGILLGAVHGIVE------SLF 321 (417)
Q Consensus 249 ~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~-dl~ge~t~L~G~~pA~ie------a~~ 321 (417)
..- +.|+.-.+++..+...+|...+|-..+ +.+.|..- .+=-.|-++|+-.-.++. .-.
T Consensus 152 ----------LvE-lVPaPwTsp~tVdrt~~lM~sigq~pV---~l~rei~Gf~lnriq~Ailne~wrLvasGil~v~dv 217 (313)
T KOG2305|consen 152 ----------LVE-LVPAPWTSPDTVDRTRALMRSIGQEPV---TLKREILGFALNRIQYAILNETWRLVASGILNVNDV 217 (313)
T ss_pred ----------hhe-eccCCCCChhHHHHHHHHHHHhCCCCc---ccccccccceeccccHHHHHHHHHHHHccCcchhhH
Confidence 112 455666678999999999999995311 11111110 000111122221111221 235
Q ss_pred HHHHHcCCCHHHHHHHHHHHHH---HHHHHHHH
Q 014834 322 RRFTENGMSEDLAYKNTVECIT---GIISKIIS 351 (417)
Q Consensus 322 d~~v~~Gl~~e~A~~~~~q~~~---~g~~~li~ 351 (417)
|.-..+|+-+-.|+.-.+||++ .|.++...
T Consensus 218 D~VmS~GLG~RYAflG~lET~HLNA~Gv~dYf~ 250 (313)
T KOG2305|consen 218 DAVMSAGLGPRYAFLGPLETAHLNAEGVADYFK 250 (313)
T ss_pred HHHHhcCCCcchhcccchhhhhcCcHHHHHHHH
Confidence 6677899999999999999988 34444443
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.013 Score=59.23 Aligned_cols=65 Identities=18% Similarity=0.200 Sum_probs=44.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhHHHHHHc--------CceecCCCcCCHHhhcCcCCE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--------GFTEENGTLGDIYETISGSDL 181 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~~~A~~~--------G~~~~~~~~~s~~Ea~~~ADI 181 (417)
+||+|||+|.+|.++|..|... |+ ++.+.+...+.....+.+. .... ..+..+.+++||+
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~------~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i----~~~~~~~~~~adi 76 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQ------GIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKI----YAGDYSDCKDADL 76 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEE----EeCCHHHhCCCCE
Confidence 7999999999999999999988 77 6777776544332222221 1111 1223456899999
Q ss_pred EEEcc
Q 014834 182 VLLLI 186 (417)
Q Consensus 182 ViLav 186 (417)
||++.
T Consensus 77 vIita 81 (315)
T PRK00066 77 VVITA 81 (315)
T ss_pred EEEec
Confidence 99964
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0045 Score=71.50 Aligned_cols=88 Identities=15% Similarity=0.098 Sum_probs=55.5
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhc---------CCcEEEEEecCChhhHHHHHHc-CceecCCCcCCHHh---h
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAK---------SDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYE---T 175 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~---------~G~~ViVg~r~~s~s~~~A~~~-G~~~~~~~~~s~~E---a 175 (417)
+.+++|+|||+|.||..++..|.+. .+.. .+..|.|+++...+..+.+... ++....-.+.+.++ +
T Consensus 567 ~~~~rIlVLGAG~VG~~~a~~La~~-~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~ 645 (1042)
T PLN02819 567 KKSQNVLILGAGRVCRPAAEYLASV-KTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKY 645 (1042)
T ss_pred ccCCcEEEECCCHHHHHHHHHHHhC-cCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHh
Confidence 3458999999999999999999865 1000 0123667766544434444433 42110000335444 4
Q ss_pred cCcCCEEEEccCCchHHHHHHH
Q 014834 176 ISGSDLVLLLISDAAQADNYEK 197 (417)
Q Consensus 176 ~~~ADIViLavpd~~~~~Vl~e 197 (417)
++++|+|+.|+|+..+.++...
T Consensus 646 v~~~DaVIsalP~~~H~~VAka 667 (1042)
T PLN02819 646 VSQVDVVISLLPASCHAVVAKA 667 (1042)
T ss_pred hcCCCEEEECCCchhhHHHHHH
Confidence 4689999999999988887764
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.011 Score=63.62 Aligned_cols=94 Identities=15% Similarity=0.143 Sum_probs=65.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec--C----C-------CcCC-------
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--N----G-------TLGD------- 171 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~--~----~-------~~~s------- 171 (417)
.|+.|||+|.+|...++.++.. |..|++.+++. ...+.++..|.... + + +..+
T Consensus 165 akVlViGaG~iGl~Aa~~ak~l------GA~V~v~d~~~-~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~ 237 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSL------GAIVRAFDTRP-EVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAE 237 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCH-HHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHH
Confidence 6999999999999999999988 88887776654 45677777776520 0 0 0001
Q ss_pred ---HHhhcCcCCEEEEcc--CCchHHH-HHHHHHhcCCCCcEEEEec
Q 014834 172 ---IYETISGSDLVLLLI--SDAAQAD-NYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 172 ---~~Ea~~~ADIViLav--pd~~~~~-Vl~eI~~~lk~gaiLi~a~ 212 (417)
..+.++++|+||.++ |-...+. +.++....||+|.+|+|.+
T Consensus 238 ~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA 284 (511)
T TIGR00561 238 MELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLA 284 (511)
T ss_pred HHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEee
Confidence 345578999999987 2221223 3345677899999988654
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.009 Score=54.47 Aligned_cols=88 Identities=15% Similarity=0.097 Sum_probs=58.9
Q ss_pred cccchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCC
Q 014834 101 FKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSD 180 (417)
Q Consensus 101 f~~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~AD 180 (417)
||.. -.|+| ++|.|||.|.+|...++.|.+. |.+|.|.... ...+......+....+ .... +-++++|
T Consensus 5 ~P~~-l~l~~-~~vlVvGGG~va~rka~~Ll~~------ga~V~VIsp~--~~~~l~~l~~i~~~~~-~~~~-~dl~~a~ 72 (157)
T PRK06719 5 YPLM-FNLHN-KVVVIIGGGKIAYRKASGLKDT------GAFVTVVSPE--ICKEMKELPYITWKQK-TFSN-DDIKDAH 72 (157)
T ss_pred cceE-EEcCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCc--cCHHHHhccCcEEEec-ccCh-hcCCCce
Confidence 5554 67899 9999999999999999999999 9988776432 2222222112222111 1122 2368899
Q ss_pred EEEEccCCchHHHHHHHHHh
Q 014834 181 LVLLLISDAAQADNYEKIFS 200 (417)
Q Consensus 181 IViLavpd~~~~~Vl~eI~~ 200 (417)
+||.+|.+......+.....
T Consensus 73 lViaaT~d~e~N~~i~~~a~ 92 (157)
T PRK06719 73 LIYAATNQHAVNMMVKQAAH 92 (157)
T ss_pred EEEECCCCHHHHHHHHHHHH
Confidence 99999999887766555443
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.02 Score=51.48 Aligned_cols=66 Identities=27% Similarity=0.278 Sum_probs=50.5
Q ss_pred EEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCC---HHhhcCcCCEEEEccCC
Q 014834 114 IGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLLISD 188 (417)
Q Consensus 114 IgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s---~~Ea~~~ADIViLavpd 188 (417)
|.|+|. |.+|..+++.|.+. |++|++..|+.++..+ ..++....+.+.+ +.++++++|.|+.++++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~------~~~V~~~~R~~~~~~~---~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRR------GHEVTALVRSPSKAED---SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHT------TSEEEEEESSGGGHHH---CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred eEEECCCChHHHHHHHHHHHC------CCEEEEEecCchhccc---ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence 689995 99999999999999 9999988888654433 4455433333444 45778899999999985
|
... |
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0062 Score=62.38 Aligned_cols=94 Identities=15% Similarity=0.168 Sum_probs=63.1
Q ss_pred hhccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEE
Q 014834 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 106 ~~l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIVi 183 (417)
..++| ++|.|+|. |.||..+++.|... .|. ++++.+|...+..+.+.+.+.. ...+.++++.++|+|+
T Consensus 151 ~~l~~-k~VLVtGAtG~IGs~lar~L~~~-----~gv~~lilv~R~~~rl~~La~el~~~----~i~~l~~~l~~aDiVv 220 (340)
T PRK14982 151 IDLSK-ATVAVVGATGDIGSAVCRWLDAK-----TGVAELLLVARQQERLQELQAELGGG----KILSLEEALPEADIVV 220 (340)
T ss_pred cCcCC-CEEEEEccChHHHHHHHHHHHhh-----CCCCEEEEEcCCHHHHHHHHHHhccc----cHHhHHHHHccCCEEE
Confidence 36888 99999999 89999999999743 043 7777777655555555554311 1346788999999999
Q ss_pred EccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 184 LLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 184 Lavpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
.++...... +++. ..++++.+++|.+
T Consensus 221 ~~ts~~~~~-~I~~--~~l~~~~~viDiA 246 (340)
T PRK14982 221 WVASMPKGV-EIDP--ETLKKPCLMIDGG 246 (340)
T ss_pred ECCcCCcCC-cCCH--HHhCCCeEEEEec
Confidence 998743221 1111 2346777777543
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.024 Score=57.30 Aligned_cols=68 Identities=19% Similarity=0.179 Sum_probs=43.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhHHHHHH----cCceecCC-C-cCCHHhhcCcCCEEE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA----AGFTEENG-T-LGDIYETISGSDLVL 183 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~~~A~~----~G~~~~~~-~-~~s~~Ea~~~ADIVi 183 (417)
.||+|||+|.+|.++|..|... |+ ++.+.+.+.+.....+.+ ..+..... . ..+.++ +++||+||
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~------~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivv 76 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAK------GLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVI 76 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEE
Confidence 6999999999999999999887 66 666666544332222222 21110000 0 245655 79999999
Q ss_pred Ecc
Q 014834 184 LLI 186 (417)
Q Consensus 184 Lav 186 (417)
++.
T Consensus 77 ita 79 (312)
T cd05293 77 VTA 79 (312)
T ss_pred ECC
Confidence 953
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.017 Score=62.28 Aligned_cols=73 Identities=19% Similarity=0.252 Sum_probs=54.6
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHH----hhcCcCCEEEEccCC
Q 014834 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY----ETISGSDLVLLLISD 188 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~----Ea~~~ADIViLavpd 188 (417)
+|-|+|+|.+|..+++.|++. |+++++-+.+ ++..+.+++.|.....|...+.+ .-++++|.+++++++
T Consensus 419 hiiI~G~G~~G~~la~~L~~~------g~~vvvId~d-~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~ 491 (558)
T PRK10669 419 HALLVGYGRVGSLLGEKLLAA------GIPLVVIETS-RTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPN 491 (558)
T ss_pred CEEEECCChHHHHHHHHHHHC------CCCEEEEECC-HHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCC
Confidence 799999999999999999999 9988776654 45567777888654333333332 125799999999998
Q ss_pred chHH
Q 014834 189 AAQA 192 (417)
Q Consensus 189 ~~~~ 192 (417)
+...
T Consensus 492 ~~~~ 495 (558)
T PRK10669 492 GYEA 495 (558)
T ss_pred hHHH
Confidence 7654
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.012 Score=53.03 Aligned_cols=74 Identities=15% Similarity=0.144 Sum_probs=57.1
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| |+|.|||-+ ..|..++.-|.+. |..|.+..++ ..++++.+++||+|+.
T Consensus 24 ~~~~g-k~v~VvGrs~~vG~pla~lL~~~------gatV~~~~~~-------------------t~~l~~~v~~ADIVvs 77 (140)
T cd05212 24 VRLDG-KKVLVVGRSGIVGAPLQCLLQRD------GATVYSCDWK-------------------TIQLQSKVHDADVVVV 77 (140)
T ss_pred CCCCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEeCCC-------------------CcCHHHHHhhCCEEEE
Confidence 46889 999999977 7899999999988 8888776432 1256788999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEE
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGL 210 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~ 210 (417)
++.-.. +++ ...+|||++|++
T Consensus 78 Atg~~~---~i~--~~~ikpGa~Vid 98 (140)
T cd05212 78 GSPKPE---KVP--TEWIKPGATVIN 98 (140)
T ss_pred ecCCCC---ccC--HHHcCCCCEEEE
Confidence 998652 232 345899998774
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0077 Score=60.21 Aligned_cols=94 Identities=16% Similarity=0.138 Sum_probs=63.1
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcCceecCCCcCCHH--hhcCcCCEEE
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIY--ETISGSDLVL 183 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~--Ea~~~ADIVi 183 (417)
..+| ++|.|+|.|=.+.|++..|.+. |. +|+|.+|+.++..+++...+-........... +...++|+||
T Consensus 123 ~~~~-~~vlilGAGGAarAv~~aL~~~------g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliI 195 (283)
T COG0169 123 DVTG-KRVLILGAGGAARAVAFALAEA------GAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLI 195 (283)
T ss_pred ccCC-CEEEEECCcHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEE
Confidence 4457 9999999999999999999999 96 79999998777777776654110000011111 2222699999
Q ss_pred EccCCchHHHH----HHHHHhcCCCCcEEE
Q 014834 184 LLISDAAQADN----YEKIFSCMKPNSILG 209 (417)
Q Consensus 184 Lavpd~~~~~V----l~eI~~~lk~gaiLi 209 (417)
.+||....... +. ...++++.++.
T Consensus 196 NaTp~Gm~~~~~~~~~~--~~~l~~~~~v~ 223 (283)
T COG0169 196 NATPVGMAGPEGDSPVP--AELLPKGAIVY 223 (283)
T ss_pred ECCCCCCCCCCCCCCCc--HHhcCcCCEEE
Confidence 99997665431 21 34456666665
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.032 Score=57.85 Aligned_cols=93 Identities=18% Similarity=0.145 Sum_probs=59.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHc--CceecCCCcCCHH----hhcCcCCEEEEc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEENGTLGDIY----ETISGSDLVLLL 185 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~--G~~~~~~~~~s~~----Ea~~~ADIViLa 185 (417)
++|.|||+|.+|..+++.|.+. |++|++.++..+ ..+...+. ++....|...+.+ .-++++|.|+++
T Consensus 232 ~~iiIiG~G~~g~~l~~~L~~~------~~~v~vid~~~~-~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~ 304 (453)
T PRK09496 232 KRVMIVGGGNIGYYLAKLLEKE------GYSVKLIERDPE-RAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIAL 304 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECCHH-HHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEEC
Confidence 8999999999999999999998 999877766543 34444332 4322112222322 246789999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 186 vpd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
+++....-+...+...+.+..+++.+
T Consensus 305 ~~~~~~n~~~~~~~~~~~~~~ii~~~ 330 (453)
T PRK09496 305 TNDDEANILSSLLAKRLGAKKVIALV 330 (453)
T ss_pred CCCcHHHHHHHHHHHHhCCCeEEEEE
Confidence 99765433333344445555555543
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.02 Score=48.31 Aligned_cols=74 Identities=19% Similarity=0.202 Sum_probs=49.6
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
.++| ++|.|||.|.+|..=++.|.+. |.+|+|..... + ..+..+... -...++-+.++|+|++++
T Consensus 4 ~l~~-~~vlVvGgG~va~~k~~~Ll~~------gA~v~vis~~~----~-~~~~~i~~~---~~~~~~~l~~~~lV~~at 68 (103)
T PF13241_consen 4 DLKG-KRVLVVGGGPVAARKARLLLEA------GAKVTVISPEI----E-FSEGLIQLI---RREFEEDLDGADLVFAAT 68 (103)
T ss_dssp --TT--EEEEEEESHHHHHHHHHHCCC------TBEEEEEESSE----H-HHHTSCEEE---ESS-GGGCTTESEEEE-S
T ss_pred EcCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCch----h-hhhhHHHHH---hhhHHHHHhhheEEEecC
Confidence 4688 9999999999999999999999 99888776543 1 111223221 123456688999999999
Q ss_pred CCchHHHHH
Q 014834 187 SDAAQADNY 195 (417)
Q Consensus 187 pd~~~~~Vl 195 (417)
.+....+-+
T Consensus 69 ~d~~~n~~i 77 (103)
T PF13241_consen 69 DDPELNEAI 77 (103)
T ss_dssp S-HHHHHHH
T ss_pred CCHHHHHHH
Confidence 997765433
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.019 Score=55.97 Aligned_cols=65 Identities=28% Similarity=0.315 Sum_probs=43.2
Q ss_pred EEEEcc-cchHHHHHHHHHhhhhhhcCC----cEEEEEecCChhhHHHHHH-------c-CceecCCCcCCHHhhcCcCC
Q 014834 114 IGVIGW-GSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARA-------A-GFTEENGTLGDIYETISGSD 180 (417)
Q Consensus 114 IgIIG~-G~mG~AiA~~Lr~s~~~~~~G----~~ViVg~r~~s~s~~~A~~-------~-G~~~~~~~~~s~~Ea~~~AD 180 (417)
|+|||. |.+|..++..|... | .++.+.+...++....+.+ . ..... ...+..+++++||
T Consensus 1 I~IIGagG~vG~~ia~~l~~~------~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~--~~~d~~~~~~~aD 72 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG------SVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVS--ITDDPYEAFKDAD 72 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC------CCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEE--ECCchHHHhCCCC
Confidence 689999 99999999999988 7 4777776554322221111 1 11110 1345678899999
Q ss_pred EEEEcc
Q 014834 181 LVLLLI 186 (417)
Q Consensus 181 IViLav 186 (417)
+||++.
T Consensus 73 iVv~t~ 78 (263)
T cd00650 73 VVIITA 78 (263)
T ss_pred EEEECC
Confidence 999954
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.03 Score=53.01 Aligned_cols=102 Identities=16% Similarity=0.133 Sum_probs=60.9
Q ss_pred hhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecC---Ch---------------hhHHHHH---H-cC
Q 014834 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK---GS---------------RSFAEAR---A-AG 161 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~---~s---------------~s~~~A~---~-~G 161 (417)
+..|+. ++|+|||+|.+|..+|.+|... |+ ++++.++. .+ +....++ + ..
T Consensus 16 q~~L~~-~~V~IvG~GglGs~ia~~La~~------Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp 88 (200)
T TIGR02354 16 VQKLEQ-ATVAICGLGGLGSNVAINLARA------GIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINP 88 (200)
T ss_pred HHHHhC-CcEEEECcCHHHHHHHHHHHHc------CCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCC
Confidence 577888 9999999999999999999998 87 56666543 11 0000000 0 00
Q ss_pred -cee--cCCCc--CCHHhhcCcCCEEEEccCCchHH-HHHHHHHhcCCCCcEEEEecCc
Q 014834 162 -FTE--ENGTL--GDIYETISGSDLVLLLISDAAQA-DNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 162 -~~~--~~~~~--~s~~Ea~~~ADIViLavpd~~~~-~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
+.. .+..+ .+..+.++++|+||-++-+.... .+++++...++. ..|+.++|+
T Consensus 89 ~~~i~~~~~~i~~~~~~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~~-~~ii~~~g~ 146 (200)
T TIGR02354 89 YTEIEAYDEKITEENIDKFFKDADIVCEAFDNAEAKAMLVNAVLEKYKD-KYLIAASGL 146 (200)
T ss_pred CCEEEEeeeeCCHhHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHcCC-CcEEEEecc
Confidence 111 00001 12345788999999995333444 345667666654 344445665
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.01 Score=56.43 Aligned_cols=93 Identities=17% Similarity=0.119 Sum_probs=62.0
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCc--CC----HHhhcCc
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL--GD----IYETISG 178 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~--~s----~~Ea~~~ 178 (417)
..++| |+|.|||-+ ..|.+++.-|.+. |..|.+.+.+.- +......... ...+ .+ +.+.+++
T Consensus 58 ~~l~G-K~vvVIGrS~iVGkPla~lL~~~------~AtVti~~~~~~--~~~~~~~~~~--hs~t~~~~~~~~l~~~~~~ 126 (197)
T cd01079 58 NRLYG-KTITIINRSEVVGRPLAALLAND------GARVYSVDINGI--QVFTRGESIR--HEKHHVTDEEAMTLDCLSQ 126 (197)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEEecCcc--cccccccccc--cccccccchhhHHHHHhhh
Confidence 46899 999999988 7899999999988 888887754321 1111000000 0001 12 6789999
Q ss_pred CCEEEEccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 014834 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 179 ADIViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~G 213 (417)
||+||.+++-.... +. ...+|+|++|++++-
T Consensus 127 ADIVIsAvG~~~~~--i~--~d~ik~GavVIDVGi 157 (197)
T cd01079 127 SDVVITGVPSPNYK--VP--TELLKDGAICINFAS 157 (197)
T ss_pred CCEEEEccCCCCCc--cC--HHHcCCCcEEEEcCC
Confidence 99999999965431 21 245789999988663
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0065 Score=63.70 Aligned_cols=80 Identities=19% Similarity=0.112 Sum_probs=48.0
Q ss_pred CEEEEEcccchHHHHHH--HHHhhhhhhcCCcEEEEEecCChhhHHHH-------HHcCceecCCCcCCHHhhcCcCCEE
Q 014834 112 NQIGVIGWGSQGPAQAQ--NLRDSLAEAKSDIVVKVGLRKGSRSFAEA-------RAAGFTEENGTLGDIYETISGSDLV 182 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~--~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A-------~~~G~~~~~~~~~s~~Ea~~~ADIV 182 (417)
.||+|||.|++|.+.+. .|.... +-.|.+|+++++..++..... ...+....=..+.|.++++++||+|
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~--~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~V 78 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTP--ELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFV 78 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCC--CCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEE
Confidence 48999999999998766 443210 111668887776543221111 1112110000145788999999999
Q ss_pred EEccCCchHHH
Q 014834 183 LLLISDAAQAD 193 (417)
Q Consensus 183 iLavpd~~~~~ 193 (417)
|.+++......
T Consensus 79 i~ai~~~~~~~ 89 (423)
T cd05297 79 INTIQVGGHEY 89 (423)
T ss_pred EEeeEecCccc
Confidence 99999755443
|
linked to 3D####ucture |
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.021 Score=62.55 Aligned_cols=82 Identities=13% Similarity=0.175 Sum_probs=59.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHH----hhcCcCCEEEEccC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY----ETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~----Ea~~~ADIViLavp 187 (417)
.+|-|+|+|.+|..+++.|.+. |+++++-+. +.+..+.+++.|....-|...+.+ .-+++||.|+++++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~------g~~vvvID~-d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~ 473 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMAN------KMRITVLER-DISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCN 473 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhC------CCCEEEEEC-CHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeC
Confidence 5799999999999999999998 998876654 455677888888754323333332 13779999999999
Q ss_pred CchHHH-HHHHHHh
Q 014834 188 DAAQAD-NYEKIFS 200 (417)
Q Consensus 188 d~~~~~-Vl~eI~~ 200 (417)
|..... +...++.
T Consensus 474 d~~~n~~i~~~~r~ 487 (601)
T PRK03659 474 EPEDTMKIVELCQQ 487 (601)
T ss_pred CHHHHHHHHHHHHH
Confidence 977653 3333333
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.019 Score=52.81 Aligned_cols=76 Identities=17% Similarity=0.220 Sum_probs=51.6
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| |+|.|||-+ ..|.+++.-|.+. |..|.+.... ..+.++.+++||+||.
T Consensus 32 ~~l~G-k~v~VvGrs~~VG~Pla~lL~~~------~atVt~~h~~-------------------T~~l~~~~~~ADIVVs 85 (160)
T PF02882_consen 32 IDLEG-KKVVVVGRSNIVGKPLAMLLLNK------GATVTICHSK-------------------TKNLQEITRRADIVVS 85 (160)
T ss_dssp -STTT--EEEEE-TTTTTHHHHHHHHHHT------T-EEEEE-TT-------------------SSSHHHHHTTSSEEEE
T ss_pred CCCCC-CEEEEECCcCCCChHHHHHHHhC------CCeEEeccCC-------------------CCcccceeeeccEEee
Confidence 45899 999999998 5999999999999 8888765432 1256778899999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
++.-... ++ ..++|+|++|++++
T Consensus 86 a~G~~~~---i~--~~~ik~gavVIDvG 108 (160)
T PF02882_consen 86 AVGKPNL---IK--ADWIKPGAVVIDVG 108 (160)
T ss_dssp -SSSTT----B---GGGS-TTEEEEE--
T ss_pred eeccccc---cc--cccccCCcEEEecC
Confidence 9985332 22 34589999888765
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.045 Score=49.10 Aligned_cols=92 Identities=14% Similarity=0.110 Sum_probs=66.6
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec-CCCcCCHHhhcCcCCEEEEccC
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~-~~~~~s~~Ea~~~ADIViLavp 187 (417)
++ ++|.+||+| -|.++|..|.+. |++|+..+ .++...+.+++.+.... ++.+...-+.-+++|+|--.=|
T Consensus 16 ~~-~kileIG~G-fG~~vA~~L~~~------G~~ViaID-i~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirp 86 (134)
T PRK04148 16 KN-KKIVELGIG-FYFKVAKKLKES------GFDVIVID-INEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRP 86 (134)
T ss_pred cC-CEEEEEEec-CCHHHHHHHHHC------CCEEEEEE-CCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCC
Confidence 56 789999999 899999999988 99986554 44556777887776432 2333345578899999999988
Q ss_pred CchHHHHHHHHHhcCCCCcEEE
Q 014834 188 DAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~gaiLi 209 (417)
|.....-+-+++..+.-.-+|.
T Consensus 87 p~el~~~~~~la~~~~~~~~i~ 108 (134)
T PRK04148 87 PRDLQPFILELAKKINVPLIIK 108 (134)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE
Confidence 8776655557777665444444
|
|
| >PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.019 Score=58.27 Aligned_cols=118 Identities=10% Similarity=0.142 Sum_probs=81.5
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCh--hhHHHHHHcCceecCCCcCCHHhhcCc--CCEEEEcc
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s--~s~~~A~~~G~~~~~~~~~s~~Ea~~~--ADIViLav 186 (417)
.||-|-|. |.+|.-+++.+++. |-+|+.|..+.. .... ..|+.. ..+++|+.+. .|+.++++
T Consensus 30 t~v~vqGitg~~g~~h~~~~~~y------gt~iv~GV~Pgkgg~~v~---~~Gvpv----y~sv~ea~~~~~~D~avI~V 96 (317)
T PTZ00187 30 TKVICQGITGKQGTFHTEQAIEY------GTKMVGGVNPKKAGTTHL---KHGLPV----FATVKEAKKATGADASVIYV 96 (317)
T ss_pred CeEEEecCCChHHHHHHHHHHHh------CCcEEEEECCCCCCceEe---cCCccc----cCCHHHHhcccCCCEEEEec
Confidence 58899995 99999999999999 988887766533 2211 137665 6789999887 99999999
Q ss_pred CCchHHHHHHHHHh-cCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhH
Q 014834 187 SDAAQADNYEKIFS-CMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSV 244 (417)
Q Consensus 187 pd~~~~~Vl~eI~~-~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~v 244 (417)
|+....+.+.+... .+ ..+|+++.||..............+-.+..+-||+||-..
T Consensus 97 Pa~~v~dai~Ea~~aGI--~~~ViiteGfpe~d~~~l~~~~~~~~g~rliGPNc~Gii~ 153 (317)
T PTZ00187 97 PPPHAASAIIEAIEAEI--PLVVCITEGIPQHDMVKVKHALLSQNKTRLIGPNCPGIIK 153 (317)
T ss_pred CHHHHHHHHHHHHHcCC--CEEEEECCCCchhhHHHHHHHHhhcCCCEEECCCCceEEc
Confidence 99999887776443 23 3478899999653211100011122345566799988653
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.022 Score=61.28 Aligned_cols=96 Identities=15% Similarity=0.107 Sum_probs=66.5
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec--CCC-------------cCCH-
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGT-------------LGDI- 172 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~--~~~-------------~~s~- 172 (417)
.| .||.|||+|.+|...++.++.. |.+|++.+++ ....+.+++.|.... +.. ..+.
T Consensus 164 pg-~kVlViGaG~iGL~Ai~~Ak~l------GA~V~a~D~~-~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~ 235 (509)
T PRK09424 164 PP-AKVLVIGAGVAGLAAIGAAGSL------GAIVRAFDTR-PEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFI 235 (509)
T ss_pred CC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHcCCeEEEeccccccccccchhhhcchhHH
Confidence 45 8999999999999999999988 8887766665 455788888887510 100 0010
Q ss_pred -------HhhcCcCCEEEEccCCch--HHHHH-HHHHhcCCCCcEEEEec
Q 014834 173 -------YETISGSDLVLLLISDAA--QADNY-EKIFSCMKPNSILGLSH 212 (417)
Q Consensus 173 -------~Ea~~~ADIViLavpd~~--~~~Vl-~eI~~~lk~gaiLi~a~ 212 (417)
.+.++++|+||-++.-.. ...++ ++....||+|.+|++.+
T Consensus 236 ~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 236 KAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred HHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 122367999999976322 33443 67778899999877553
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.023 Score=57.76 Aligned_cols=76 Identities=17% Similarity=0.142 Sum_probs=45.6
Q ss_pred hhhccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCc--EEEEEecCCh--hhHHHHHHc-CceecCCCc-CCHHhhcC
Q 014834 105 PDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGS--RSFAEARAA-GFTEENGTL-GDIYETIS 177 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s--~s~~~A~~~-G~~~~~~~~-~s~~Ea~~ 177 (417)
|..++. +||+|||. |++|.+++..|... +. ++.+.++... ...+..... .+...+.+. .+..++++
T Consensus 3 ~~~~~~-~KI~IiGaaG~VGs~~a~~l~~~------~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~ 75 (321)
T PTZ00325 3 PSALKM-FKVAVLGAAGGIGQPLSLLLKQN------PHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALR 75 (321)
T ss_pred CcCCCC-CEEEEECCCCHHHHHHHHHHhcC------CCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhC
Confidence 355666 99999999 99999999999866 53 6666655211 111211101 112101011 12267899
Q ss_pred cCCEEEEccC
Q 014834 178 GSDLVLLLIS 187 (417)
Q Consensus 178 ~ADIViLavp 187 (417)
++|+|+++.-
T Consensus 76 gaDvVVitaG 85 (321)
T PTZ00325 76 GADLVLICAG 85 (321)
T ss_pred CCCEEEECCC
Confidence 9999998754
|
|
| >PRK05678 succinyl-CoA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.022 Score=57.13 Aligned_cols=92 Identities=14% Similarity=0.249 Sum_probs=66.8
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCc--CCEEEEccCC
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~--ADIViLavpd 188 (417)
.||.|.|. |++|..+.++|++. |+++++...+..-. .+-.|+.. ..+++|+-+. .|+.++++|+
T Consensus 9 ~~~~v~~~~~~~g~~~l~~l~~~------g~~~v~pVnp~~~~---~~v~G~~~----y~sv~dlp~~~~~DlAvi~vp~ 75 (291)
T PRK05678 9 TKVIVQGITGKQGTFHTEQMLAY------GTNIVGGVTPGKGG---TTVLGLPV----FNTVAEAVEATGANASVIYVPP 75 (291)
T ss_pred CeEEEeCCCchHHHHHHHHHHHC------CCCEEEEECCCCCC---CeEeCeec----cCCHHHHhhccCCCEEEEEcCH
Confidence 68999996 88999999999988 87633233322001 11257765 6788888776 8999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEEEecCchhh
Q 014834 189 AAQADNYEKIFSCMKPNSILGLSHGFLLG 217 (417)
Q Consensus 189 ~~~~~Vl~eI~~~lk~gaiLi~a~G~~i~ 217 (417)
....+++++... ..-..++++++||...
T Consensus 76 ~~v~~~l~e~~~-~gvk~avI~s~Gf~~~ 103 (291)
T PRK05678 76 PFAADAILEAID-AGIDLIVCITEGIPVL 103 (291)
T ss_pred HHHHHHHHHHHH-CCCCEEEEECCCCCHH
Confidence 999999988654 2234578899999754
|
|
| >COG2344 AT-rich DNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.018 Score=54.62 Aligned_cols=105 Identities=12% Similarity=0.243 Sum_probs=63.6
Q ss_pred CCEEEEEcccchHHHHHHHH--HhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcC--cCCEEEEcc
Q 014834 111 INQIGVIGWGSQGPAQAQNL--RDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLI 186 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~L--r~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~--~ADIViLav 186 (417)
+.++.|||+||+|+|++..- .+. |++++...+.+....-.. -.++.+ ....++++.++ +.|+.+|+|
T Consensus 84 ~tnviiVG~GnlG~All~Y~f~~~~------~~~iv~~FDv~~~~VG~~-~~~v~V--~~~d~le~~v~~~dv~iaiLtV 154 (211)
T COG2344 84 TTNVIIVGVGNLGRALLNYNFSKKN------GMKIVAAFDVDPDKVGTK-IGDVPV--YDLDDLEKFVKKNDVEIAILTV 154 (211)
T ss_pred ceeEEEEccChHHHHHhcCcchhhc------CceEEEEecCCHHHhCcc-cCCeee--echHHHHHHHHhcCccEEEEEc
Confidence 36899999999999998632 234 777776666544322111 122332 11345666666 789999999
Q ss_pred CCchHHHHHHHHHh-cCCCCcEEEEecCchhhhhhhcccCCCCCccEEEe
Q 014834 187 SDAAQADNYEKIFS-CMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAV 235 (417)
Q Consensus 187 pd~~~~~Vl~eI~~-~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v 235 (417)
|-....++.+.+.. .+| .+|-|+.. + +..|+++.|.-+
T Consensus 155 Pa~~AQ~vad~Lv~aGVk--GIlNFtPv----~-----l~~pe~V~V~~i 193 (211)
T COG2344 155 PAEHAQEVADRLVKAGVK--GILNFTPV----R-----LQVPEGVIVENI 193 (211)
T ss_pred cHHHHHHHHHHHHHcCCc--eEEeccce----E-----ecCCCCcEEEEe
Confidence 98777777776433 332 25555543 2 355776655543
|
|
| >PRK05472 redox-sensing transcriptional repressor Rex; Provisional | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.0069 Score=57.45 Aligned_cols=81 Identities=10% Similarity=0.190 Sum_probs=51.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCc--CCEEEEccCCc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~--ADIViLavpd~ 189 (417)
++|+|||+|.+|.+++..+... + .|++++...+.+....... -.|+.. ....++.+.+++ .|+|++++|+.
T Consensus 85 ~rV~IIGaG~iG~~l~~~~~~~--~--~g~~ivgv~D~d~~~~~~~-i~g~~v--~~~~~l~~li~~~~iD~ViIa~P~~ 157 (213)
T PRK05472 85 WNVALVGAGNLGRALLNYNGFE--K--RGFKIVAAFDVDPEKIGTK-IGGIPV--YHIDELEEVVKENDIEIGILTVPAE 157 (213)
T ss_pred cEEEEECCCHHHHHHHHhhhcc--c--CCcEEEEEEECChhhcCCE-eCCeEE--cCHHHHHHHHHHCCCCEEEEeCCch
Confidence 6899999999999999864321 1 2777664444332211100 123322 113456677654 99999999999
Q ss_pred hHHHHHHHHH
Q 014834 190 AQADNYEKIF 199 (417)
Q Consensus 190 ~~~~Vl~eI~ 199 (417)
.+.++.+.+.
T Consensus 158 ~~~~i~~~l~ 167 (213)
T PRK05472 158 AAQEVADRLV 167 (213)
T ss_pred hHHHHHHHHH
Confidence 9887776554
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.035 Score=52.24 Aligned_cols=69 Identities=22% Similarity=0.274 Sum_probs=52.0
Q ss_pred EEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChh-hHHHHHHcCceecCCCcC---CHHhhcCcCCEEEEccCC
Q 014834 114 IGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEENGTLG---DIYETISGSDLVLLLISD 188 (417)
Q Consensus 114 IgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~-s~~~A~~~G~~~~~~~~~---s~~Ea~~~ADIViLavpd 188 (417)
|.|+|. |.+|.+++..|.+. +++|.+..|+.++ ..+..++.|+........ ++.++++++|.||++++.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~------~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSA------GFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHT------TGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred CEEECCccHHHHHHHHHHHhC------CCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCc
Confidence 789996 99999999999998 9999888887543 334556677754222233 355689999999999993
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.02 Score=58.63 Aligned_cols=78 Identities=22% Similarity=0.170 Sum_probs=51.1
Q ss_pred EEEEcccchHHHHHHHHHhhhhhhcCC-c-EEEEEecCChhhHHHHHH-c--CceecCCCcCC---HHhhcCcCCEEEEc
Q 014834 114 IGVIGWGSQGPAQAQNLRDSLAEAKSD-I-VVKVGLRKGSRSFAEARA-A--GFTEENGTLGD---IYETISGSDLVLLL 185 (417)
Q Consensus 114 IgIIG~G~mG~AiA~~Lr~s~~~~~~G-~-~ViVg~r~~s~s~~~A~~-~--G~~~~~~~~~s---~~Ea~~~ADIViLa 185 (417)
|.|||+|.+|..+++.|.+. + . +|++++|+..+..+.+.+ . .+....-.+.+ +.++++++|+||.|
T Consensus 1 IlvlG~G~vG~~~~~~L~~~------~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~ 74 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARR------GPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINC 74 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCT------TCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-
T ss_pred CEEEcCcHHHHHHHHHHhcC------CCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEEC
Confidence 78999999999999999988 5 4 788888876554444432 1 22211001222 55789999999999
Q ss_pred cCCchHHHHHHH
Q 014834 186 ISDAAQADNYEK 197 (417)
Q Consensus 186 vpd~~~~~Vl~e 197 (417)
+||.....+++.
T Consensus 75 ~gp~~~~~v~~~ 86 (386)
T PF03435_consen 75 AGPFFGEPVARA 86 (386)
T ss_dssp SSGGGHHHHHHH
T ss_pred CccchhHHHHHH
Confidence 999866666654
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.016 Score=58.15 Aligned_cols=76 Identities=16% Similarity=0.109 Sum_probs=58.5
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| |+|.|||-| ..|.++|.-|.+. |..|.+.... ..++.+.+++||+||.
T Consensus 153 i~l~G-k~vvVvGrs~~VG~Pla~lL~~~------gAtVtv~hs~-------------------t~~l~~~~~~ADIvV~ 206 (285)
T PRK14191 153 IEIKG-KDVVIIGASNIVGKPLAMLMLNA------GASVSVCHIL-------------------TKDLSFYTQNADIVCV 206 (285)
T ss_pred CCCCC-CEEEEECCCchhHHHHHHHHHHC------CCEEEEEeCC-------------------cHHHHHHHHhCCEEEE
Confidence 46889 999999999 9999999999988 8888776321 1245678899999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
++.-... +. ..++|+|++|++++
T Consensus 207 AvG~p~~---i~--~~~vk~GavVIDvG 229 (285)
T PRK14191 207 GVGKPDL---IK--ASMVKKGAVVVDIG 229 (285)
T ss_pred ecCCCCc---CC--HHHcCCCcEEEEee
Confidence 9975433 22 23568999988754
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.05 Score=51.71 Aligned_cols=84 Identities=18% Similarity=0.174 Sum_probs=57.2
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhH-HHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~-~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
-.|+| ++|.|||.|.+|..-++.|.+. |.+|+|......+.. +.+.+..+....+.. . .+.+.++|+||.
T Consensus 5 l~l~g-k~vlVvGgG~va~rk~~~Ll~~------ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~-~-~~dl~~~~lVi~ 75 (205)
T TIGR01470 5 ANLEG-RAVLVVGGGDVALRKARLLLKA------GAQLRVIAEELESELTLLAEQGGITWLARCF-D-ADILEGAFLVIA 75 (205)
T ss_pred EEcCC-CeEEEECcCHHHHHHHHHHHHC------CCEEEEEcCCCCHHHHHHHHcCCEEEEeCCC-C-HHHhCCcEEEEE
Confidence 35889 9999999999999999999999 988887765433333 333332343211221 2 344689999999
Q ss_pred ccCCchHH-HHHHHH
Q 014834 185 LISDAAQA-DNYEKI 198 (417)
Q Consensus 185 avpd~~~~-~Vl~eI 198 (417)
++.+.... .++...
T Consensus 76 at~d~~ln~~i~~~a 90 (205)
T TIGR01470 76 ATDDEELNRRVAHAA 90 (205)
T ss_pred CCCCHHHHHHHHHHH
Confidence 99987553 444433
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.021 Score=57.00 Aligned_cols=76 Identities=17% Similarity=0.188 Sum_probs=58.7
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| +++.|||.+ ..|.+++.-|... |..|.+..++ ..++.+.+++||+||.
T Consensus 148 i~l~G-k~V~ViGrs~~vGrpla~lL~~~------~atVtv~hs~-------------------t~~L~~~~~~ADIvI~ 201 (279)
T PRK14178 148 ISIAG-KRAVVVGRSIDVGRPMAALLLNA------DATVTICHSK-------------------TENLKAELRQADILVS 201 (279)
T ss_pred CCCCC-CEEEEECCCccccHHHHHHHHhC------CCeeEEEecC-------------------hhHHHHHHhhCCEEEE
Confidence 46899 999999999 9999999999887 8888776542 1256788999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
+++-. .++. ..++|||++|++.+
T Consensus 202 Avgk~---~lv~--~~~vk~GavVIDVg 224 (279)
T PRK14178 202 AAGKA---GFIT--PDMVKPGATVIDVG 224 (279)
T ss_pred CCCcc---cccC--HHHcCCCcEEEEee
Confidence 99733 2232 12369999988765
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.041 Score=51.92 Aligned_cols=88 Identities=15% Similarity=0.121 Sum_probs=54.8
Q ss_pred hhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCC-------------------hhhHHHHHH---c-
Q 014834 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEARA---A- 160 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~-------------------s~s~~~A~~---~- 160 (417)
++-|+. +||.|||+|.+|..++++|... |+ ++.+.++.. .+....++. .
T Consensus 16 q~kl~~-~~VlviG~GglGs~ia~~La~~------Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n 88 (202)
T TIGR02356 16 QQRLLN-SHVLIIGAGGLGSPAALYLAGA------GVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELN 88 (202)
T ss_pred HHHhcC-CCEEEECCCHHHHHHHHHHHHc------CCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhC
Confidence 477888 9999999999999999999998 87 666655431 111111111 1
Q ss_pred -Ccee--cCCCcC--CHHhhcCcCCEEEEccCCchHHHHHHHHH
Q 014834 161 -GFTE--ENGTLG--DIYETISGSDLVLLLISDAAQADNYEKIF 199 (417)
Q Consensus 161 -G~~~--~~~~~~--s~~Ea~~~ADIViLavpd~~~~~Vl~eI~ 199 (417)
.+.. .+..+. +..+.++++|+||.++-.......+.+..
T Consensus 89 p~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~ 132 (202)
T TIGR02356 89 SDIQVTALKERVTAENLELLINNVDLVLDCTDNFATRYLINDAC 132 (202)
T ss_pred CCCEEEEehhcCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 1111 011111 24567889999999986655555565543
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.027 Score=56.42 Aligned_cols=117 Identities=15% Similarity=0.207 Sum_probs=77.0
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCc--CCEEEEccCC
Q 014834 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~--ADIViLavpd 188 (417)
.+|.|.| .|.+|..+-.+|+.. |.+++.+..+. +.. .+-.|+.. ..+++|+-+. .|++++++|+
T Consensus 7 ~~~~~~g~~~~~~~~~~~~~~~~------g~~~v~~V~p~-~~~--~~v~G~~~----y~sv~dlp~~~~~Dlavi~vpa 73 (286)
T TIGR01019 7 TKVIVQGITGSQGSFHTEQMLAY------GTNIVGGVTPG-KGG--TTVLGLPV----FDSVKEAVEETGANASVIFVPA 73 (286)
T ss_pred CcEEEecCCcHHHHHHHHHHHhC------CCCEEEEECCC-CCc--ceecCeec----cCCHHHHhhccCCCEEEEecCH
Confidence 5799999 689999999999998 88855554432 111 12357775 6788887775 6999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchh
Q 014834 189 AAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPS 243 (417)
Q Consensus 189 ~~~~~Vl~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~ 243 (417)
....+++++... ..-..++++++||.... ++.....-..-.+-.+-||+.|..
T Consensus 74 ~~v~~~l~e~~~-~Gvk~avIis~Gf~e~~-~~~l~~~a~~~girilGPNc~Gii 126 (286)
T TIGR01019 74 PFAADAIFEAID-AGIELIVCITEGIPVHD-MLKVKRYMEESGTRLIGPNCPGII 126 (286)
T ss_pred HHHHHHHHHHHH-CCCCEEEEECCCCCHHH-HHHHHHHHHHcCCEEECCCCceEE
Confidence 999999988654 22345788999996431 111111111223444457776654
|
ATP citrate lyases appear to form an outgroup. |
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.059 Score=54.87 Aligned_cols=67 Identities=16% Similarity=0.168 Sum_probs=42.5
Q ss_pred CCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCc-------EEEEEecCCh------hhHHHHHHc-----CceecCCCcC
Q 014834 110 GINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGS------RSFAEARAA-----GFTEENGTLG 170 (417)
Q Consensus 110 gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~-------~ViVg~r~~s------~s~~~A~~~-----G~~~~~~~~~ 170 (417)
.+.||+|||+ |++|.++|..|... ++ ++.+.+.... ...+..... .... ..
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~------~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i----~~ 72 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASG------DMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVI----TD 72 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhh------hhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEE----ec
Confidence 4579999998 99999999988775 43 4555554321 112222111 1121 23
Q ss_pred CHHhhcCcCCEEEEcc
Q 014834 171 DIYETISGSDLVLLLI 186 (417)
Q Consensus 171 s~~Ea~~~ADIViLav 186 (417)
+..+.+++||+||++-
T Consensus 73 ~~y~~~~daDiVVita 88 (326)
T PRK05442 73 DPNVAFKDADVALLVG 88 (326)
T ss_pred ChHHHhCCCCEEEEeC
Confidence 4567889999999874
|
|
| >TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.037 Score=56.62 Aligned_cols=77 Identities=19% Similarity=0.292 Sum_probs=49.5
Q ss_pred EEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChh-hHHHHHHcCceec-----------C-C--CcCCHHhhcCc
Q 014834 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEE-----------N-G--TLGDIYETISG 178 (417)
Q Consensus 114 IgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~-s~~~A~~~G~~~~-----------~-~--~~~s~~Ea~~~ 178 (417)
|||+|+|.+|..+++.+... .+++++..++.+.. ....|...|+... + + ...+++++..+
T Consensus 1 VaInG~GrIGr~varav~~~-----~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~ 75 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQ-----DDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEK 75 (333)
T ss_pred CEEECCcHHHHHHHHHHhhC-----CCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhc
Confidence 69999999999999998754 15676544443322 1234443332110 0 0 03468889999
Q ss_pred CCEEEEccCCchHHHHH
Q 014834 179 SDLVLLLISDAAQADNY 195 (417)
Q Consensus 179 ADIViLavpd~~~~~Vl 195 (417)
+|+|+.|+|......-.
T Consensus 76 vDiVve~Tp~~~~~~na 92 (333)
T TIGR01546 76 VDIVVDATPGGIGAKNK 92 (333)
T ss_pred CCEEEECCCCCCChhhH
Confidence 99999999987765433
|
All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's. |
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.049 Score=54.96 Aligned_cols=69 Identities=16% Similarity=0.141 Sum_probs=43.0
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhH----HHHHHcCceec-C-CCcCCHHhhcCcCCEEEE
Q 014834 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSF----AEARAAGFTEE-N-GTLGDIYETISGSDLVLL 184 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~----~~A~~~G~~~~-~-~~~~s~~Ea~~~ADIViL 184 (417)
||+|||.|.+|.++|..|... ++ ++.+.+...++.. ++....-+... + .......+.+++||+|++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~------~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvi 74 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALAL------GLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVI 74 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEE
Confidence 799999999999999999887 76 5666665433322 22221111100 0 001123467899999999
Q ss_pred ccC
Q 014834 185 LIS 187 (417)
Q Consensus 185 avp 187 (417)
+.-
T Consensus 75 taG 77 (307)
T cd05290 75 TAG 77 (307)
T ss_pred CCC
Confidence 743
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.085 Score=55.98 Aligned_cols=70 Identities=17% Similarity=0.034 Sum_probs=42.3
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcC--Cc--EEEEEecCChhhHHHHHH--cC-------ceecCCCcCCHHhhcC
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKS--DI--VVKVGLRKGSRSFAEARA--AG-------FTEENGTLGDIYETIS 177 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~--G~--~ViVg~r~~s~s~~~A~~--~G-------~~~~~~~~~s~~Ea~~ 177 (417)
-||+|||. |++|.++|..|.... =+|. ++ ++++.++..++....+.+ ++ +.. ..+..+.++
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~-v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i----~~~~ye~~k 175 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGE-VFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSI----GIDPYEVFQ 175 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcc-cccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEE----ecCCHHHhC
Confidence 68999999 999999999887530 0000 22 555555544433322222 11 111 134557889
Q ss_pred cCCEEEEcc
Q 014834 178 GSDLVLLLI 186 (417)
Q Consensus 178 ~ADIViLav 186 (417)
+||+||+.-
T Consensus 176 daDiVVitA 184 (444)
T PLN00112 176 DAEWALLIG 184 (444)
T ss_pred cCCEEEECC
Confidence 999999974
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.045 Score=60.23 Aligned_cols=75 Identities=15% Similarity=0.175 Sum_probs=56.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHH----hhcCcCCEEEEccC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY----ETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~----Ea~~~ADIViLavp 187 (417)
++|-|+|+|.+|..+++.|++. |+++++-+. +....+.+++.|.....|...+.+ .-+++||.|+++++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~------g~~vvvID~-d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~ 473 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSS------GVKMTVLDH-DPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAID 473 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhC------CCCEEEEEC-CHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeC
Confidence 6899999999999999999999 988776554 455677778888765333333332 23669999999999
Q ss_pred CchHHH
Q 014834 188 DAAQAD 193 (417)
Q Consensus 188 d~~~~~ 193 (417)
|.....
T Consensus 474 d~~~n~ 479 (621)
T PRK03562 474 DPQTSL 479 (621)
T ss_pred CHHHHH
Confidence 876653
|
|
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.03 Score=53.84 Aligned_cols=79 Identities=16% Similarity=0.026 Sum_probs=47.8
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCh----------hhHHHHHHcCceec-CC-CcCCHH
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----------RSFAEARAAGFTEE-NG-TLGDIY 173 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s----------~s~~~A~~~G~~~~-~~-~~~s~~ 173 (417)
..++| ++|+|.|+|+.|...|+.|.+. |..++...+.+. ...+...+.+-... .. ...+.+
T Consensus 19 ~~l~g-~~vaIqGfGnVG~~~a~~L~~~------G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~ 91 (217)
T cd05211 19 DSLEG-LTVAVQGLGNVGWGLAKKLAEE------GGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGE 91 (217)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcc
Confidence 46789 9999999999999999999998 885544334333 33444433332210 00 001112
Q ss_pred hh-cCcCCEEEEccCCchH
Q 014834 174 ET-ISGSDLVLLLISDAAQ 191 (417)
Q Consensus 174 Ea-~~~ADIViLavpd~~~ 191 (417)
+. -.+||+++-|.+...+
T Consensus 92 ~l~~~~~DVlipaA~~~~i 110 (217)
T cd05211 92 AILGLDVDIFAPCALGNVI 110 (217)
T ss_pred cceeccccEEeeccccCcc
Confidence 22 1378888888775533
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.029 Score=58.29 Aligned_cols=67 Identities=18% Similarity=0.135 Sum_probs=43.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~ 189 (417)
++|.|||+|.+|.++|+.|++. |.+|++.++.... .... +... +......+...+++|+||.+.+..
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~------G~~V~g~D~~~~~-~~~~---~~~~-~~~~~~~~~~~~~~dlvV~s~gi~ 70 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQK------GVYVIGVDKSLEA-LQSC---PYIH-ERYLENAEEFPEQVDLVVRSPGIK 70 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHC------CCEEEEEeCCccc-cchh---HHHh-hhhcCCcHHHhcCCCEEEECCCCC
Confidence 8999999999999999999999 9988766654322 1111 1110 000123334457899999987544
|
|
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.042 Score=55.15 Aligned_cols=76 Identities=13% Similarity=0.121 Sum_probs=58.1
Q ss_pred hhccCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~-mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| +++.|||.++ .|.+++.-|.+. |..|.+.... +.++.+.+++||+||.
T Consensus 160 i~l~G-k~vvViGrs~iVGkPla~lL~~~------~atVtv~hs~-------------------T~~l~~~~~~ADIvv~ 213 (287)
T PRK14176 160 VDIEG-KNAVIVGHSNVVGKPMAAMLLNR------NATVSVCHVF-------------------TDDLKKYTLDADILVV 213 (287)
T ss_pred CCCCC-CEEEEECCCcccHHHHHHHHHHC------CCEEEEEecc-------------------CCCHHHHHhhCCEEEE
Confidence 46889 9999999998 999999999988 8888776521 2357788899999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
++--.. .+. ..++++|++|++++
T Consensus 214 AvG~p~---~i~--~~~vk~gavVIDvG 236 (287)
T PRK14176 214 ATGVKH---LIK--ADMVKEGAVIFDVG 236 (287)
T ss_pred ccCCcc---ccC--HHHcCCCcEEEEec
Confidence 765322 221 23678999988754
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.028 Score=55.99 Aligned_cols=78 Identities=17% Similarity=0.117 Sum_probs=51.3
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcE-EEEEecCC---hhhHHHHHHc---C--ceecCCCcC---CHHh
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKG---SRSFAEARAA---G--FTEENGTLG---DIYE 174 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~-ViVg~r~~---s~s~~~A~~~---G--~~~~~~~~~---s~~E 174 (417)
.++| +++.|+|.|-+|.+++..|.+. |.. |.+.+|+. ++..+.+++. + .....-... +.++
T Consensus 123 ~~~~-k~vlI~GAGGagrAia~~La~~------G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~ 195 (289)
T PRK12548 123 DVKG-KKLTVIGAGGAATAIQVQCALD------GAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKA 195 (289)
T ss_pred CcCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHh
Confidence 3567 8999999999999999999988 985 88888875 3433433322 1 110000011 2234
Q ss_pred hcCcCCEEEEccCCchH
Q 014834 175 TISGSDLVLLLISDAAQ 191 (417)
Q Consensus 175 a~~~ADIViLavpd~~~ 191 (417)
.++.+|+||.+||....
T Consensus 196 ~~~~~DilINaTp~Gm~ 212 (289)
T PRK12548 196 EIASSDILVNATLVGMK 212 (289)
T ss_pred hhccCCEEEEeCCCCCC
Confidence 56678999999987543
|
|
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.085 Score=54.29 Aligned_cols=65 Identities=23% Similarity=0.240 Sum_probs=42.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhHHHHHH----cC----ceecCCCcCCHHhhcCcCCE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA----AG----FTEENGTLGDIYETISGSDL 181 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~~~A~~----~G----~~~~~~~~~s~~Ea~~~ADI 181 (417)
+||+|||.|++|.++|..|... ++ ++.+.+...+.....+.+ .. .... ...+.+ .+++||+
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~------~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~--~~~dy~-~~~daDi 108 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQ------DLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKIL--ASTDYA-VTAGSDL 108 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEE--eCCCHH-HhCCCCE
Confidence 5999999999999999999887 66 566666543322222221 11 1110 012444 4899999
Q ss_pred EEEc
Q 014834 182 VLLL 185 (417)
Q Consensus 182 ViLa 185 (417)
||++
T Consensus 109 VVit 112 (350)
T PLN02602 109 CIVT 112 (350)
T ss_pred EEEC
Confidence 9998
|
|
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.035 Score=53.66 Aligned_cols=35 Identities=23% Similarity=0.397 Sum_probs=30.6
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEE-EEe
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGL 147 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vi-Vg~ 147 (417)
..++| ++|+|.|+|++|...++.|.+. |..|+ |.+
T Consensus 27 ~~l~~-~~v~I~G~G~VG~~~a~~L~~~------g~~vv~v~D 62 (227)
T cd01076 27 IGLAG-ARVAIQGFGNVGSHAARFLHEA------GAKVVAVSD 62 (227)
T ss_pred CCccC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEEC
Confidence 56788 9999999999999999999998 98876 443
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.037 Score=56.20 Aligned_cols=65 Identities=14% Similarity=0.126 Sum_probs=41.9
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc-------EEEEEecCChh--h----HHHHHHc-----CceecCCCcCCH
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGSR--S----FAEARAA-----GFTEENGTLGDI 172 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~-------~ViVg~r~~s~--s----~~~A~~~-----G~~~~~~~~~s~ 172 (417)
+||+|||+ |++|.++|..|... |+ ++.+.+..... . .+..... .+.. ..+.
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~------~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i----~~~~ 72 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASG------EMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVI----TDDP 72 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc------cccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEE----ecCc
Confidence 69999999 99999999999876 54 46555553221 1 1111111 1111 2345
Q ss_pred HhhcCcCCEEEEcc
Q 014834 173 YETISGSDLVLLLI 186 (417)
Q Consensus 173 ~Ea~~~ADIViLav 186 (417)
.+.+++||+||++-
T Consensus 73 ~~~~~daDivvita 86 (322)
T cd01338 73 NVAFKDADWALLVG 86 (322)
T ss_pred HHHhCCCCEEEEeC
Confidence 57889999999973
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.035 Score=55.59 Aligned_cols=76 Identities=16% Similarity=0.141 Sum_probs=58.3
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| |+|.|||-+ ..|.+++.-|.+. |..|.+.... +.++.+.+++||+||.
T Consensus 153 i~l~G-k~vvViGrS~~VG~Pla~lL~~~------~AtVti~hs~-------------------T~~l~~~~~~ADIvV~ 206 (281)
T PRK14183 153 IDVKG-KDVCVVGASNIVGKPMAALLLNA------NATVDICHIF-------------------TKDLKAHTKKADIVIV 206 (281)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CcCHHHHHhhCCEEEE
Confidence 46889 999999999 8999999999988 8888765321 1256778999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
++.-... +. ..++|+|++|++++
T Consensus 207 AvGkp~~---i~--~~~vk~gavvIDvG 229 (281)
T PRK14183 207 GVGKPNL---IT--EDMVKEGAIVIDIG 229 (281)
T ss_pred ecCcccc---cC--HHHcCCCcEEEEee
Confidence 9975332 22 34578999988754
|
|
| >TIGR01761 thiaz-red thiazolinyl imide reductase | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.052 Score=55.69 Aligned_cols=86 Identities=13% Similarity=0.090 Sum_probs=60.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEE-EEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccC---
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS--- 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavp--- 187 (417)
.||||||+ .+|..++..+++. .+ +++++ |.++..++..+.|+++|+.. ..+.+|++++.|++++++|
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~-~~---~~eLvaV~d~~~erA~~~A~~~gi~~----y~~~eell~d~Di~~V~ipt~~ 74 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAA-PE---RFELAGILAQGSERSRALAHRLGVPL----YCEVEELPDDIDIACVVVRSAI 74 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhC-CC---CcEEEEEEcCCHHHHHHHHHHhCCCc----cCCHHHHhcCCCEEEEEeCCCC
Confidence 58999999 5799999999875 00 34543 44555566778888899864 6899999988888888774
Q ss_pred -CchHHHHHHHHHhcCCCCcEEE
Q 014834 188 -DAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 188 -d~~~~~Vl~eI~~~lk~gaiLi 209 (417)
+..+.++..+. |+.|+-|.
T Consensus 75 P~~~H~e~a~~a---L~aGkHVL 94 (343)
T TIGR01761 75 VGGQGSALARAL---LARGIHVL 94 (343)
T ss_pred CCccHHHHHHHH---HhCCCeEE
Confidence 45666666543 34565433
|
This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG). |
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.015 Score=53.01 Aligned_cols=100 Identities=17% Similarity=0.138 Sum_probs=63.0
Q ss_pred hhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecC------------------
Q 014834 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN------------------ 166 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~------------------ 166 (417)
+..+.. .+|.|+|.|+.|..-+.-+..- |.+|++.+... ...+.....+.....
T Consensus 15 ~~~~~p-~~vvv~G~G~vg~gA~~~~~~l------Ga~v~~~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 86 (168)
T PF01262_consen 15 PGGVPP-AKVVVTGAGRVGQGAAEIAKGL------GAEVVVPDERP-ERLRQLESLGAYFIEVDYEDHLERKDFDKADYY 86 (168)
T ss_dssp TTEE-T--EEEEESTSHHHHHHHHHHHHT------T-EEEEEESSH-HHHHHHHHTTTEESEETTTTTTTSB-CCHHHCH
T ss_pred CCCCCC-eEEEEECCCHHHHHHHHHHhHC------CCEEEeccCCH-HHHHhhhcccCceEEEcccccccccccchhhhh
Confidence 344455 7999999999999999998887 99988776653 333444444432100
Q ss_pred ----CCcCCHHhhcCcCCEEEEc--cCCchHHHHHH-HHHhcCCCCcEEEEec
Q 014834 167 ----GTLGDIYETISGSDLVLLL--ISDAAQADNYE-KIFSCMKPNSILGLSH 212 (417)
Q Consensus 167 ----~~~~s~~Ea~~~ADIViLa--vpd~~~~~Vl~-eI~~~lk~gaiLi~a~ 212 (417)
.....+.+.++.+|+||.. .|+...+.++. +-...|+++++|++.+
T Consensus 87 ~~~~~~~~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 87 EHPESYESNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHCCHHHHHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHHhHHHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 0001245678899999963 55666677664 5677799999999764
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.04 Score=55.31 Aligned_cols=76 Identities=16% Similarity=0.215 Sum_probs=58.4
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| |+|.|||-+ ..|.+++.-|.+. +..|++...+ +.++++.+++||+||.
T Consensus 151 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~aTVtichs~-------------------T~~l~~~~~~ADIvIs 204 (287)
T PRK14173 151 IPLAG-KEVVVVGRSNIVGKPLAALLLRE------DATVTLAHSK-------------------TQDLPAVTRRADVLVV 204 (287)
T ss_pred CCCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 46889 999999976 7899999999988 8778765421 2357788999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
++.-... +. ..++|+|++|++++
T Consensus 205 AvGkp~~---i~--~~~vk~GavVIDVG 227 (287)
T PRK14173 205 AVGRPHL---IT--PEMVRPGAVVVDVG 227 (287)
T ss_pred ecCCcCc---cC--HHHcCCCCEEEEcc
Confidence 9985432 22 34578999988754
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.041 Score=54.97 Aligned_cols=78 Identities=15% Similarity=0.179 Sum_probs=52.7
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCh---hhHHHHHHcCceecC-CCcCC------HHhh
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGS---RSFAEARAAGFTEEN-GTLGD------IYET 175 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s---~s~~~A~~~G~~~~~-~~~~s------~~Ea 175 (417)
.++| +++.|||.|-.+.|++..|... |. +|.|.+|..+ +..+.+...+..... -.+.+ +.+.
T Consensus 121 ~~~~-k~vlvlGaGGaarAi~~~l~~~------g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~ 193 (288)
T PRK12749 121 DIKG-KTMVLLGAGGASTAIGAQGAIE------GLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEA 193 (288)
T ss_pred CcCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhh
Confidence 3577 8999999999999999999887 87 7888998742 444555443210000 00112 2335
Q ss_pred cCcCCEEEEccCCchH
Q 014834 176 ISGSDLVLLLISDAAQ 191 (417)
Q Consensus 176 ~~~ADIViLavpd~~~ 191 (417)
+.++|+||.+||....
T Consensus 194 ~~~aDivINaTp~Gm~ 209 (288)
T PRK12749 194 LASADILTNGTKVGMK 209 (288)
T ss_pred cccCCEEEECCCCCCC
Confidence 6789999999997553
|
|
| >PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.043 Score=55.35 Aligned_cols=76 Identities=14% Similarity=0.162 Sum_probs=58.6
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| |+|.|||-+ ..|.+++.-|.+. |..|.+.... +.++++.+++||+||.
T Consensus 154 i~l~G-k~vvVIGrS~iVGkPla~lL~~~------~atVtv~hs~-------------------T~~l~~~~~~ADIvIs 207 (297)
T PRK14186 154 IDIAG-KKAVVVGRSILVGKPLALMLLAA------NATVTIAHSR-------------------TQDLASITREADILVA 207 (297)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 46889 999999977 7899999999988 8888766321 2357788999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
++.-.. ++. ..++|+|++|++++
T Consensus 208 AvGkp~---~i~--~~~ik~gavVIDvG 230 (297)
T PRK14186 208 AAGRPN---LIG--AEMVKPGAVVVDVG 230 (297)
T ss_pred ccCCcC---ccC--HHHcCCCCEEEEec
Confidence 998543 232 34678999888764
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.085 Score=53.95 Aligned_cols=88 Identities=15% Similarity=0.201 Sum_probs=57.2
Q ss_pred hhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCC---------------------hhhH---HHHHH
Q 014834 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG---------------------SRSF---AEARA 159 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~---------------------s~s~---~~A~~ 159 (417)
++.|+. ++|.|||+|..|..+|.+|... |+ ++.+.++.. .+.. +..++
T Consensus 19 Q~~L~~-~~VlIiG~GglGs~va~~La~a------Gvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~ 91 (338)
T PRK12475 19 QRKIRE-KHVLIVGAGALGAANAEALVRA------GIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRK 91 (338)
T ss_pred HHhhcC-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHH
Confidence 678888 9999999999999999999998 87 566555431 0111 11111
Q ss_pred --cCceec----CCCcCCHHhhcCcCCEEEEccCCchHHHHHHHHH
Q 014834 160 --AGFTEE----NGTLGDIYETISGSDLVLLLISDAAQADNYEKIF 199 (417)
Q Consensus 160 --~G~~~~----~~~~~s~~Ea~~~ADIViLavpd~~~~~Vl~eI~ 199 (417)
.++... +-+..+.+++++++|+||.++-+.....++.++.
T Consensus 92 inp~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~ 137 (338)
T PRK12475 92 INSEVEIVPVVTDVTVEELEELVKEVDLIIDATDNFDTRLLINDLS 137 (338)
T ss_pred HCCCcEEEEEeccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHH
Confidence 122210 1111235778999999999996655555666654
|
|
| >PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2 | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.16 Score=46.33 Aligned_cols=69 Identities=22% Similarity=0.231 Sum_probs=48.9
Q ss_pred cCCCEEEEEc--ccchHHHHHHHHHhhhhhhcCCcEEEEEecCC----h--hhH----HHHHHcCc--eecCCCcCCHHh
Q 014834 109 NGINQIGVIG--WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----S--RSF----AEARAAGF--TEENGTLGDIYE 174 (417)
Q Consensus 109 ~gmkkIgIIG--~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~----s--~s~----~~A~~~G~--~~~~~~~~s~~E 174 (417)
+| +||++|| .+++..|++..+..- |.++.+....+ . .-. +.+.+.|. .. +.+++|
T Consensus 1 ~g-l~i~~vGD~~~rv~~Sl~~~~~~~------g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~----~~~~~e 69 (158)
T PF00185_consen 1 KG-LKIAYVGDGHNRVAHSLIELLAKF------GMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITI----TDDIEE 69 (158)
T ss_dssp TT-EEEEEESSTTSHHHHHHHHHHHHT------TSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEE----ESSHHH
T ss_pred CC-CEEEEECCCCChHHHHHHHHHHHc------CCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEE----EeCHHH
Confidence 57 8999999 389999999999998 99876665443 1 112 22333443 33 578999
Q ss_pred hcCcCCEEEEccCC
Q 014834 175 TISGSDLVLLLISD 188 (417)
Q Consensus 175 a~~~ADIViLavpd 188 (417)
+++++|+|....-.
T Consensus 70 ~l~~aDvvy~~~~~ 83 (158)
T PF00185_consen 70 ALKGADVVYTDRWQ 83 (158)
T ss_dssp HHTT-SEEEEESSS
T ss_pred hcCCCCEEEEcCcc
Confidence 99999999887555
|
1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A .... |
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.061 Score=53.79 Aligned_cols=75 Identities=20% Similarity=0.226 Sum_probs=58.3
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| |++.|||-+ ..|.+++.-|.+. |..|.+...+ +.++.+.+++||+||.
T Consensus 154 i~l~G-k~vvViGrS~~VGkPla~lL~~~------~AtVt~chs~-------------------T~~l~~~~~~ADIvIs 207 (278)
T PRK14172 154 IDIEG-KEVVVIGRSNIVGKPVAQLLLNE------NATVTICHSK-------------------TKNLKEVCKKADILVV 207 (278)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 46899 999999977 7899999999988 8888766421 2367788999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
++.-... +. ..++|+|++|+++
T Consensus 208 AvGkp~~---i~--~~~ik~gavVIDv 229 (278)
T PRK14172 208 AIGRPKF---ID--EEYVKEGAIVIDV 229 (278)
T ss_pred cCCCcCc---cC--HHHcCCCcEEEEe
Confidence 9985432 22 3457899998876
|
|
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.13 Score=52.37 Aligned_cols=69 Identities=17% Similarity=0.076 Sum_probs=42.4
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc-------EEEEEecCC--hhhHHHHHHc--Cc-eecCC--CcCCHHhhc
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKG--SRSFAEARAA--GF-TEENG--TLGDIYETI 176 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~-------~ViVg~r~~--s~s~~~A~~~--G~-~~~~~--~~~s~~Ea~ 176 (417)
.||+|||. |.+|.++|..|... ++ ++.+.+... ++....+.+. .. ....+ ...+..+.+
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~------~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~ 77 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASG------ELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAF 77 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhC------CcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHh
Confidence 58999998 99999999999877 54 566665532 1122222211 11 00000 013456788
Q ss_pred CcCCEEEEcc
Q 014834 177 SGSDLVLLLI 186 (417)
Q Consensus 177 ~~ADIViLav 186 (417)
++||+||++-
T Consensus 78 ~daDvVVitA 87 (323)
T TIGR01759 78 KDVDAALLVG 87 (323)
T ss_pred CCCCEEEEeC
Confidence 9999999973
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.046 Score=55.18 Aligned_cols=76 Identities=18% Similarity=0.137 Sum_probs=58.7
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| |+|.|||-+ ..|.+++.-|.+. |..|++.... +.++++.+++||+||.
T Consensus 163 i~l~G-k~vvVIGRS~iVGkPla~lL~~~------~ATVtvchs~-------------------T~nl~~~~~~ADIvv~ 216 (299)
T PLN02516 163 IPIKG-KKAVVVGRSNIVGLPVSLLLLKA------DATVTVVHSR-------------------TPDPESIVREADIVIA 216 (299)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 46889 999999987 6899999999988 8888776321 2367888999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
++.-. .++. ..++|+|++|++++
T Consensus 217 AvGk~---~~i~--~~~vk~gavVIDvG 239 (299)
T PLN02516 217 AAGQA---MMIK--GDWIKPGAAVIDVG 239 (299)
T ss_pred cCCCc---CccC--HHHcCCCCEEEEee
Confidence 98753 2332 34578999888654
|
|
| >PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.047 Score=54.72 Aligned_cols=76 Identities=20% Similarity=0.234 Sum_probs=58.4
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| |++.|||-+ ..|.+++.-|.+. +..|++.... +.++.+.+++||+||.
T Consensus 153 i~l~G-k~vvVvGrS~iVGkPla~lL~~~------~atVtichs~-------------------T~~l~~~~~~ADIvI~ 206 (284)
T PRK14170 153 TQIEG-KRAVVIGRSNIVGKPVAQLLLNE------NATVTIAHSR-------------------TKDLPQVAKEADILVV 206 (284)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 46899 999999987 6899999999988 8888765321 2357788999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
++.-... +. ..++|+|++|++++
T Consensus 207 AvG~~~~---i~--~~~vk~GavVIDvG 229 (284)
T PRK14170 207 ATGLAKF---VK--KDYIKPGAIVIDVG 229 (284)
T ss_pred ecCCcCc---cC--HHHcCCCCEEEEcc
Confidence 9985432 22 34578999888754
|
|
| >PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.074 Score=45.10 Aligned_cols=84 Identities=17% Similarity=0.180 Sum_probs=58.7
Q ss_pred chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHH--HcCceecCCCcCCHHhhcCcCCEEEEccCCchHHH-HHHH
Q 014834 121 SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR--AAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYEK 197 (417)
Q Consensus 121 ~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~--~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~~~~-Vl~e 197 (417)
+-+..+++.|++. |.+|.+++..-........ ..++.. +.+.+++++++|.||++++-....+ -+++
T Consensus 17 Sp~~~l~~~L~~~------g~~V~~~DP~v~~~~~~~~~~~~~~~~----~~~~~~~~~~~D~vvl~t~h~~f~~l~~~~ 86 (106)
T PF03720_consen 17 SPALELIEELKER------GAEVSVYDPYVDEEEIKELGKLEGVEV----CDDLEEALKGADAVVLATDHDEFRELDWEE 86 (106)
T ss_dssp -HHHHHHHHHHHT------T-EEEEE-TTSHHHHHHHHCHHHCEEE----ESSHHHHHTTESEEEESS--GGGGCCGHHH
T ss_pred CHHHHHHHHHHHC------CCEEEEECCccChHHHHhhCCccceEE----ecCHHHHhcCCCEEEEEecCHHHhccCHHH
Confidence 5677888888888 9998877655333222211 246664 5688999999999999999888876 5667
Q ss_pred HHhcCCCCcEEEEecCc
Q 014834 198 IFSCMKPNSILGLSHGF 214 (417)
Q Consensus 198 I~~~lk~gaiLi~a~G~ 214 (417)
+...|+++.+|++.-|+
T Consensus 87 ~~~~~~~~~~iiD~~~~ 103 (106)
T PF03720_consen 87 IAKLMRKPPVIIDGRNI 103 (106)
T ss_dssp HHHHSCSSEEEEESSST
T ss_pred HHHhcCCCCEEEECccc
Confidence 88888888889888764
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B .... |
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.051 Score=54.50 Aligned_cols=76 Identities=13% Similarity=0.151 Sum_probs=58.7
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| |+|.|||-+ ..|.+++.-|.+. |..|++...+ +.++++.+++||+||.
T Consensus 155 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~atVt~chs~-------------------T~~l~~~~~~ADIvIs 208 (284)
T PRK14177 155 IDVTG-KNAVVVGRSPILGKPMAMLLTEM------NATVTLCHSK-------------------TQNLPSIVRQADIIVG 208 (284)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 46889 999999977 7899999999988 8888766421 2367788999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
++.-... +. ..++|+|++|++++
T Consensus 209 AvGk~~~---i~--~~~ik~gavVIDvG 231 (284)
T PRK14177 209 AVGKPEF---IK--ADWISEGAVLLDAG 231 (284)
T ss_pred eCCCcCc---cC--HHHcCCCCEEEEec
Confidence 9885332 22 34578999888754
|
|
| >PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.063 Score=53.76 Aligned_cols=76 Identities=13% Similarity=0.202 Sum_probs=58.4
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| |+|.|||-+ ..|.+++.-|.+. |..|.+...+ +.++++.+++||+||.
T Consensus 152 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~atVtichs~-------------------T~~l~~~~~~ADIvI~ 205 (282)
T PRK14169 152 IDVAG-KRVVIVGRSNIVGRPLAGLMVNH------DATVTIAHSK-------------------TRNLKQLTKEADILVV 205 (282)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEECCC-------------------CCCHHHHHhhCCEEEE
Confidence 45899 999999977 7899999999988 8888766322 2357788999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
++.-... +. ..++|+|++|++++
T Consensus 206 AvG~p~~---i~--~~~vk~GavVIDvG 228 (282)
T PRK14169 206 AVGVPHF---IG--ADAVKPGAVVIDVG 228 (282)
T ss_pred ccCCcCc---cC--HHHcCCCcEEEEee
Confidence 9985433 22 24578999988764
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.067 Score=53.52 Aligned_cols=68 Identities=22% Similarity=0.255 Sum_probs=42.9
Q ss_pred EEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhHHHHHHc--Ccee-cCCC--cCCHHhhcCcCCEEEEcc
Q 014834 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--GFTE-ENGT--LGDIYETISGSDLVLLLI 186 (417)
Q Consensus 114 IgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~~~A~~~--G~~~-~~~~--~~s~~Ea~~~ADIViLav 186 (417)
|+|||+|.+|.++|..|... |+ ++.+.+...++....+.+. .... .... ..+..+.+++||+||++.
T Consensus 1 i~iiGaG~VG~~~a~~l~~~------~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l~~aDiVIita 74 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAK------GLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITA 74 (300)
T ss_pred CEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHHhCCCCEEEEcC
Confidence 68999999999999999988 75 6777766544333222221 1000 0000 112246889999999986
Q ss_pred C
Q 014834 187 S 187 (417)
Q Consensus 187 p 187 (417)
.
T Consensus 75 g 75 (300)
T cd00300 75 G 75 (300)
T ss_pred C
Confidence 5
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.053 Score=57.03 Aligned_cols=70 Identities=21% Similarity=0.135 Sum_probs=50.2
Q ss_pred hhccCCCEEEEEcccchHHH-HHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~A-iA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
+-.++ ++|.|||+|..|.+ +|+-|++. |++|.+.+.......+..++.|+... .....+.+.++|+||+
T Consensus 3 ~~~~~-~~v~viG~G~sG~s~~a~~L~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~---~~~~~~~~~~~d~vv~ 72 (461)
T PRK00421 3 ELRRI-KRIHFVGIGGIGMSGLAEVLLNL------GYKVSGSDLKESAVTQRLLELGAIIF---IGHDAENIKDADVVVY 72 (461)
T ss_pred CcCCC-CEEEEEEEchhhHHHHHHHHHhC------CCeEEEECCCCChHHHHHHHCCCEEe---CCCCHHHCCCCCEEEE
Confidence 45567 89999999999999 89999999 99998777553333333455687641 1223455678999988
Q ss_pred c
Q 014834 185 L 185 (417)
Q Consensus 185 a 185 (417)
.
T Consensus 73 s 73 (461)
T PRK00421 73 S 73 (461)
T ss_pred C
Confidence 5
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.095 Score=52.76 Aligned_cols=67 Identities=25% Similarity=0.351 Sum_probs=42.6
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc--EEEEEecCC--hhhHHHHH-------HcCc--eecCCCcCCHHhhcC
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKG--SRSFAEAR-------AAGF--TEENGTLGDIYETIS 177 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~--s~s~~~A~-------~~G~--~~~~~~~~s~~Ea~~ 177 (417)
+||+|||. |..|..++..|... |+ +|++.++.. ++....+. ..+. .. . ...+ .+.++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~------g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i-~-~~~d-~~~l~ 71 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKE------DVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEI-K-ISSD-LSDVA 71 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCCEEEEEECcccccccccccchhhhchhccCCCcEE-E-ECCC-HHHhC
Confidence 68999998 99999999999988 76 476666632 11111110 1111 11 0 0124 45699
Q ss_pred cCCEEEEccC
Q 014834 178 GSDLVLLLIS 187 (417)
Q Consensus 178 ~ADIViLavp 187 (417)
+||+||++..
T Consensus 72 ~aDiViitag 81 (309)
T cd05294 72 GSDIVIITAG 81 (309)
T ss_pred CCCEEEEecC
Confidence 9999999975
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.055 Score=54.14 Aligned_cols=76 Identities=17% Similarity=0.244 Sum_probs=58.8
Q ss_pred hhccCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~-mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..|.| +++.|||-++ .|..|++-|... +..|.+.... +.+..+.+++||+|+.
T Consensus 152 i~l~G-k~~vVVGrS~iVGkPla~lL~~~------naTVtvcHs~-------------------T~~l~~~~k~ADIvv~ 205 (283)
T COG0190 152 IDLRG-KNVVVVGRSNIVGKPLALLLLNA------NATVTVCHSR-------------------TKDLASITKNADIVVV 205 (283)
T ss_pred CCCCC-CEEEEECCCCcCcHHHHHHHHhC------CCEEEEEcCC-------------------CCCHHHHhhhCCEEEE
Confidence 46789 9999999985 699999999998 8888776432 1356778899999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
++--... ++ .+++|+|++|++.+
T Consensus 206 AvG~p~~---i~--~d~vk~gavVIDVG 228 (283)
T COG0190 206 AVGKPHF---IK--ADMVKPGAVVIDVG 228 (283)
T ss_pred ecCCccc---cc--cccccCCCEEEecC
Confidence 9874322 22 46789999988764
|
|
| >PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.074 Score=53.43 Aligned_cols=75 Identities=19% Similarity=0.234 Sum_probs=57.6
Q ss_pred hccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
.++| |++.|||-+ ..|.+++.-|.+. +..|.+...+ +.++.+.+++||+||.+
T Consensus 156 ~l~G-K~vvViGrS~iVGkPla~lL~~~------~ATVtichs~-------------------T~~L~~~~~~ADIvV~A 209 (288)
T PRK14171 156 NLTG-KNVVIIGRSNIVGKPLSALLLKE------NCSVTICHSK-------------------THNLSSITSKADIVVAA 209 (288)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 5889 999999977 6899999999988 8888765421 23677889999999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
+.-.. ++. ..++|+|++|++++
T Consensus 210 vGkp~---~i~--~~~vk~GavVIDvG 231 (288)
T PRK14171 210 IGSPL---KLT--AEYFNPESIVIDVG 231 (288)
T ss_pred cCCCC---ccC--HHHcCCCCEEEEee
Confidence 88432 222 34578999888754
|
|
| >PRK00676 hemA glutamyl-tRNA reductase; Validated | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.056 Score=55.43 Aligned_cols=63 Identities=10% Similarity=0.024 Sum_probs=44.7
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
.++| ++|-|||.|-||.-.+++|++. |. +|++.+|.... ...+-. ....-+...++|+||.+
T Consensus 171 ~l~~-k~vLvIGaGem~~l~a~~L~~~------g~~~i~v~nRt~~~-----~~~~~~-----~~~~~~~~~~~DvVIs~ 233 (338)
T PRK00676 171 KSKK-ASLLFIGYSEINRKVAYYLQRQ------GYSRITFCSRQQLT-----LPYRTV-----VREELSFQDPYDVIFFG 233 (338)
T ss_pred CccC-CEEEEEcccHHHHHHHHHHHHc------CCCEEEEEcCCccc-----cchhhh-----hhhhhhcccCCCEEEEc
Confidence 4778 9999999999999999999999 86 68889987421 111100 00111334689999997
Q ss_pred c
Q 014834 186 I 186 (417)
Q Consensus 186 v 186 (417)
+
T Consensus 234 t 234 (338)
T PRK00676 234 S 234 (338)
T ss_pred C
Confidence 4
|
|
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.08 Score=53.03 Aligned_cols=76 Identities=14% Similarity=0.125 Sum_probs=58.3
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..|+| |+|.|||-+ ..|.+++.-|.+. |..|.+.... +.++.+.+++||+||.
T Consensus 154 i~l~G-k~vvViGrS~~VGkPla~lL~~~------~ATVt~chs~-------------------T~dl~~~~k~ADIvIs 207 (282)
T PRK14180 154 IKTEG-AYAVVVGASNVVGKPVSQLLLNA------KATVTTCHRF-------------------TTDLKSHTTKADILIV 207 (282)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEEcCC-------------------CCCHHHHhhhcCEEEE
Confidence 46889 999999977 7899999999988 8888766432 1356677899999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
++.-... +. ..++|+|++|++++
T Consensus 208 AvGkp~~---i~--~~~vk~gavVIDvG 230 (282)
T PRK14180 208 AVGKPNF---IT--ADMVKEGAVVIDVG 230 (282)
T ss_pred ccCCcCc---CC--HHHcCCCcEEEEec
Confidence 9985433 22 24578999988754
|
|
| >PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.08 Score=53.05 Aligned_cols=76 Identities=18% Similarity=0.126 Sum_probs=58.0
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| |+|.|||-+ ..|.+++.-|.+. +..|++.... +.++++.+++||+||.
T Consensus 153 i~l~G-k~vvVvGrS~iVGkPla~lL~~~------~atVt~chs~-------------------T~nl~~~~~~ADIvIs 206 (282)
T PRK14166 153 IDLEG-KDAVIIGASNIVGRPMATMLLNA------GATVSVCHIK-------------------TKDLSLYTRQADLIIV 206 (282)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 35899 999999987 7899999999888 8888765432 1357788999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
++.-... +. ..++|+|++|++++
T Consensus 207 AvGkp~~---i~--~~~vk~GavVIDvG 229 (282)
T PRK14166 207 AAGCVNL---LR--SDMVKEGVIVVDVG 229 (282)
T ss_pred cCCCcCc---cC--HHHcCCCCEEEEec
Confidence 9885332 22 24578999988754
|
|
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.063 Score=53.85 Aligned_cols=76 Identities=14% Similarity=0.174 Sum_probs=58.2
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| |+|.|||-+ ..|.+++.-|.+. +..|++.... +.++.+.+++||+||.
T Consensus 154 i~l~G-k~vvViGrS~iVG~Pla~lL~~~------~atVt~chs~-------------------t~~l~~~~~~ADIvI~ 207 (284)
T PRK14190 154 IDISG-KHVVVVGRSNIVGKPVGQLLLNE------NATVTYCHSK-------------------TKNLAELTKQADILIV 207 (284)
T ss_pred CCCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEEeCC-------------------chhHHHHHHhCCEEEE
Confidence 35899 999999976 7899999999888 8888765321 2367788999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
++.-.. ++. ..++|+|++|++++
T Consensus 208 AvG~p~---~i~--~~~ik~gavVIDvG 230 (284)
T PRK14190 208 AVGKPK---LIT--ADMVKEGAVVIDVG 230 (284)
T ss_pred ecCCCC---cCC--HHHcCCCCEEEEee
Confidence 997543 232 23568999988764
|
|
| >TIGR00670 asp_carb_tr aspartate carbamoyltransferase | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.15 Score=51.40 Aligned_cols=70 Identities=17% Similarity=0.189 Sum_probs=52.2
Q ss_pred hccCCCEEEEEccc---chHHHHHHHHHhhhhhhcCCcEEEEEecCCh----hhHHHHHHcCceecCCCcCCHHhhcCcC
Q 014834 107 AFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAEARAAGFTEENGTLGDIYETISGS 179 (417)
Q Consensus 107 ~l~gmkkIgIIG~G---~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s----~s~~~A~~~G~~~~~~~~~s~~Ea~~~A 179 (417)
.++| .||++||-| ++..+++..+..- |++|.+.....- .-.+.+++.|.... ...++++++++|
T Consensus 147 ~l~g-~~va~vGD~~~~~v~~Sl~~~~a~~------g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~--~~~d~~~a~~~a 217 (301)
T TIGR00670 147 RLDG-LKIALVGDLKYGRTVHSLAEALTRF------GVEVYLISPEELRMPKEILEELKAKGIKVR--ETESLEEVIDEA 217 (301)
T ss_pred CCCC-CEEEEEccCCCCcHHHHHHHHHHHc------CCEEEEECCccccCCHHHHHHHHHcCCEEE--EECCHHHHhCCC
Confidence 3778 899999995 9999999999887 998887754321 22355666665421 146899999999
Q ss_pred CEEEEc
Q 014834 180 DLVLLL 185 (417)
Q Consensus 180 DIViLa 185 (417)
|+|...
T Consensus 218 Dvvyt~ 223 (301)
T TIGR00670 218 DVLYVT 223 (301)
T ss_pred CEEEEC
Confidence 999874
|
Ornithine carbamoyltransferases are in the same superfamily and form an outgroup. |
| >PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.088 Score=53.06 Aligned_cols=76 Identities=18% Similarity=0.168 Sum_probs=58.2
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| |+|.|||-+ ..|.+++.-|.+. +..|.+.... +.++.+.+++||+||.
T Consensus 156 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~aTVt~chs~-------------------T~~l~~~~~~ADIvVs 209 (294)
T PRK14187 156 RNLSG-SDAVVIGRSNIVGKPMACLLLGE------NCTVTTVHSA-------------------TRDLADYCSKADILVA 209 (294)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHhhC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 45889 999999977 7899999999988 8888765431 2357788999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
++.-... +. ..++|+|++|++++
T Consensus 210 AvGkp~~---i~--~~~ik~gaiVIDVG 232 (294)
T PRK14187 210 AVGIPNF---VK--YSWIKKGAIVIDVG 232 (294)
T ss_pred ccCCcCc---cC--HHHcCCCCEEEEec
Confidence 9985432 22 24578999988753
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.066 Score=54.39 Aligned_cols=63 Identities=14% Similarity=0.117 Sum_probs=40.5
Q ss_pred EEEEEcc-cchHHHHHHHHHhhhhhhcCCc-------EEEEEecCC--hhhH----HHHHHc-----CceecCCCcCCHH
Q 014834 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKG--SRSF----AEARAA-----GFTEENGTLGDIY 173 (417)
Q Consensus 113 kIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~-------~ViVg~r~~--s~s~----~~A~~~-----G~~~~~~~~~s~~ 173 (417)
||+|||+ |.+|..++..|... ++ ++.+.++.. +... +..... ++.. ..+..
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~------~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i----~~~~~ 71 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASG------ELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVI----TTDPE 71 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhC------CccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEE----ecChH
Confidence 8999999 99999999999876 43 365555543 2111 111110 1111 13566
Q ss_pred hhcCcCCEEEEc
Q 014834 174 ETISGSDLVLLL 185 (417)
Q Consensus 174 Ea~~~ADIViLa 185 (417)
+.+++||+||++
T Consensus 72 ~~~~~aDiVVit 83 (323)
T cd00704 72 EAFKDVDVAILV 83 (323)
T ss_pred HHhCCCCEEEEe
Confidence 889999999987
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.064 Score=56.88 Aligned_cols=74 Identities=15% Similarity=0.090 Sum_probs=52.0
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcC-CHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG-DIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~-s~~Ea~~~ADIViL 184 (417)
..+.+ ++|.|+|+|..|.++++.|++. |.+|.+.++......+...+.|+... .. ...+-+.++|+||.
T Consensus 11 ~~~~~-~~v~v~G~G~sG~a~a~~L~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~---~~~~~~~~~~~~d~vV~ 80 (473)
T PRK00141 11 PQELS-GRVLVAGAGVSGRGIAAMLSEL------GCDVVVADDNETARHKLIEVTGVADI---STAEASDQLDSFSLVVT 80 (473)
T ss_pred ccccC-CeEEEEccCHHHHHHHHHHHHC------CCEEEEECCChHHHHHHHHhcCcEEE---eCCCchhHhcCCCEEEe
Confidence 45667 9999999999999999999999 99888777653333333455687641 11 22344678999988
Q ss_pred c--cCCc
Q 014834 185 L--ISDA 189 (417)
Q Consensus 185 a--vpd~ 189 (417)
. +|+.
T Consensus 81 Spgi~~~ 87 (473)
T PRK00141 81 SPGWRPD 87 (473)
T ss_pred CCCCCCC
Confidence 6 4543
|
|
| >KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.13 Score=52.87 Aligned_cols=86 Identities=15% Similarity=0.129 Sum_probs=64.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEE-EEecCChhhHHHHHHcCceecCCCcCCHHhhcCcC--CEEEEccCC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGS--DLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~A--DIViLavpd 188 (417)
-++||+|+|.|+.=.+++|.-. ++ +++.|+ |..++.+++.+.|+..++.. -....+.+|++++. |+|.+.+|.
T Consensus 7 ir~Gi~g~g~ia~~f~~al~~~-p~--s~~~Ivava~~s~~~A~~fAq~~~~~~-~k~y~syEeLakd~~vDvVyi~~~~ 82 (351)
T KOG2741|consen 7 IRWGIVGAGRIARDFVRALHTL-PE--SNHQIVAVADPSLERAKEFAQRHNIPN-PKAYGSYEELAKDPEVDVVYISTPN 82 (351)
T ss_pred eEEEEeehhHHHHHHHHHhccC-cc--cCcEEEEEecccHHHHHHHHHhcCCCC-CccccCHHHHhcCCCcCEEEeCCCC
Confidence 4789999999999999998764 22 155543 45566667778888899831 23467899999877 999999999
Q ss_pred chHHHHHHHHHhc
Q 014834 189 AAQADNYEKIFSC 201 (417)
Q Consensus 189 ~~~~~Vl~eI~~~ 201 (417)
.++.++.-.++.+
T Consensus 83 ~qH~evv~l~l~~ 95 (351)
T KOG2741|consen 83 PQHYEVVMLALNK 95 (351)
T ss_pred ccHHHHHHHHHHc
Confidence 9998877654443
|
|
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.055 Score=54.00 Aligned_cols=77 Identities=21% Similarity=0.104 Sum_probs=53.0
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcCceecCC--CcCC---HHhhcCcCC
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENG--TLGD---IYETISGSD 180 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G~~~~~~--~~~s---~~Ea~~~AD 180 (417)
.+++ +++.|||.|-.|+|++-.|.+. |. +|.|.+|..++..+.+.......... ...+ ..+.+.++|
T Consensus 124 ~~~~-k~vlilGaGGaarAi~~aL~~~------g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~d 196 (283)
T PRK14027 124 NAKL-DSVVQVGAGGVGNAVAYALVTH------GVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAAD 196 (283)
T ss_pred CcCC-CeEEEECCcHHHHHHHHHHHHC------CCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcC
Confidence 3567 8999999999999999999988 87 68888988666666665431000000 0112 233557899
Q ss_pred EEEEccCCch
Q 014834 181 LVLLLISDAA 190 (417)
Q Consensus 181 IViLavpd~~ 190 (417)
+||.+||...
T Consensus 197 ivINaTp~Gm 206 (283)
T PRK14027 197 GVVNATPMGM 206 (283)
T ss_pred EEEEcCCCCC
Confidence 9999999543
|
|
| >PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.088 Score=54.40 Aligned_cols=76 Identities=18% Similarity=0.191 Sum_probs=57.7
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| |+|.|||-+ ..|.+++.-|.+. +..|.+...+ +.++.+.+++|||||.
T Consensus 227 i~l~G-K~vvVIGRS~iVGkPLa~LL~~~------~ATVTicHs~-------------------T~nl~~~~r~ADIVIs 280 (364)
T PLN02616 227 VEIKG-KRAVVIGRSNIVGMPAALLLQRE------DATVSIVHSR-------------------TKNPEEITREADIIIS 280 (364)
T ss_pred CCCCC-CEEEEECCCccccHHHHHHHHHC------CCeEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 35789 999999977 7899999999988 8778765321 2367788999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
++.-... +. ..++|+|++|++++
T Consensus 281 AvGkp~~---i~--~d~vK~GAvVIDVG 303 (364)
T PLN02616 281 AVGQPNM---VR--GSWIKPGAVVIDVG 303 (364)
T ss_pred cCCCcCc---CC--HHHcCCCCEEEecc
Confidence 9985332 22 34578999988653
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.092 Score=53.35 Aligned_cols=75 Identities=11% Similarity=0.033 Sum_probs=42.4
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhh-hcCCcEEEEEecCChhhHHHHHHcCcee------cCC-CcCCHHhhcCcCCEE
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAE-AKSDIVVKVGLRKGSRSFAEARAAGFTE------ENG-TLGDIYETISGSDLV 182 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~-~~~G~~ViVg~r~~s~s~~~A~~~G~~~------~~~-~~~s~~Ea~~~ADIV 182 (417)
.||+|||. |.+|.+++..|.....- ...+.++.+.++........+....+.. .+- ...+..+.+++||+|
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiV 82 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVA 82 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEE
Confidence 48999999 99999999999875000 0002367766664321101111111110 000 024556889999999
Q ss_pred EEcc
Q 014834 183 LLLI 186 (417)
Q Consensus 183 iLav 186 (417)
|++-
T Consensus 83 I~tA 86 (325)
T cd01336 83 ILVG 86 (325)
T ss_pred EEeC
Confidence 9873
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK06270 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.092 Score=53.57 Aligned_cols=99 Identities=16% Similarity=0.177 Sum_probs=54.2
Q ss_pred CEEEEEcccchHHHHHHHHHhh---hh-hhcCCcEEE-EEecCC---------h-hhHHHHHHcCceec-CC--CcCCHH
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDS---LA-EAKSDIVVK-VGLRKG---------S-RSFAEARAAGFTEE-NG--TLGDIY 173 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s---~~-~~~~G~~Vi-Vg~r~~---------s-~s~~~A~~~G~~~~-~~--~~~s~~ 173 (417)
.+|+|||+|+||..+++.|.+. +. ..+.+++|+ +.+++. . ...+.+.+.|.... .+ ...+.+
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 5899999999999999998764 11 112234443 334321 1 11122233332110 00 123677
Q ss_pred hhc--CcCCEEEEccCCchHH-HH-HHHHHhcCCCCcEEEE
Q 014834 174 ETI--SGSDLVLLLISDAAQA-DN-YEKIFSCMKPNSILGL 210 (417)
Q Consensus 174 Ea~--~~ADIViLavpd~~~~-~V-l~eI~~~lk~gaiLi~ 210 (417)
+++ .+.|+|+.++|+..+. +. ++-+...|+.|.-|+.
T Consensus 83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVt 123 (341)
T PRK06270 83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVT 123 (341)
T ss_pred HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEc
Confidence 777 4689999999986552 22 2223455666775553
|
|
| >PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.11 Score=52.11 Aligned_cols=76 Identities=16% Similarity=0.165 Sum_probs=57.7
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| |+|.|||-+ ..|.+++.-|.+. +..|.+.... +.++++.+++||+||.
T Consensus 153 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~AtVtichs~-------------------T~nl~~~~~~ADIvI~ 206 (282)
T PRK14182 153 VDPKG-KRALVVGRSNIVGKPMAMMLLER------HATVTIAHSR-------------------TADLAGEVGRADILVA 206 (282)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 45899 999999977 7899999999888 7777765321 2356788899999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
++.-.. ++. ..++|+|++|++++
T Consensus 207 AvGk~~---~i~--~~~ik~gaiVIDvG 229 (282)
T PRK14182 207 AIGKAE---LVK--GAWVKEGAVVIDVG 229 (282)
T ss_pred ecCCcC---ccC--HHHcCCCCEEEEee
Confidence 998422 332 34578999988754
|
|
| >PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.095 Score=53.87 Aligned_cols=76 Identities=18% Similarity=0.098 Sum_probs=57.5
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| |+|.|||-+ ..|.+++.-|.+. |..|.+.... +.++++.+++|||||.
T Consensus 210 i~l~G-K~vvVIGRS~iVGkPla~LL~~~------~ATVTicHs~-------------------T~nl~~~~~~ADIvIs 263 (345)
T PLN02897 210 VEIAG-KNAVVIGRSNIVGLPMSLLLQRH------DATVSTVHAF-------------------TKDPEQITRKADIVIA 263 (345)
T ss_pred CCCCC-CEEEEECCCccccHHHHHHHHHC------CCEEEEEcCC-------------------CCCHHHHHhhCCEEEE
Confidence 35889 999999977 6899999999888 8777765322 1356788999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
++.-... +. ..++|+|++|++++
T Consensus 264 AvGkp~~---v~--~d~vk~GavVIDVG 286 (345)
T PLN02897 264 AAGIPNL---VR--GSWLKPGAVVIDVG 286 (345)
T ss_pred ccCCcCc---cC--HHHcCCCCEEEEcc
Confidence 9885432 22 34578999988754
|
|
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.074 Score=56.01 Aligned_cols=71 Identities=15% Similarity=0.195 Sum_probs=50.6
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChh----hHHHHHHcCceecCCCcCCHHhhcCcCCE
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFAEARAAGFTEENGTLGDIYETISGSDL 181 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~----s~~~A~~~G~~~~~~~~~s~~Ea~~~ADI 181 (417)
..+.+ ++|+|+|+|..|.++|+-|++. |++|.+.++.... ..+..++.|+....+ ....+.+.++|+
T Consensus 10 ~~~~~-~~i~v~G~G~sG~a~a~~L~~~------G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~--~~~~~~~~~~dl 80 (458)
T PRK01710 10 KFIKN-KKVAVVGIGVSNIPLIKFLVKL------GAKVTAFDKKSEEELGEVSNELKELGVKLVLG--ENYLDKLDGFDV 80 (458)
T ss_pred hhhcC-CeEEEEcccHHHHHHHHHHHHC------CCEEEEECCCCCccchHHHHHHHhCCCEEEeC--CCChHHhccCCE
Confidence 56677 9999999999999999999999 9999887754321 113355668754111 122355678999
Q ss_pred EEEc
Q 014834 182 VLLL 185 (417)
Q Consensus 182 ViLa 185 (417)
||+.
T Consensus 81 VV~S 84 (458)
T PRK01710 81 IFKT 84 (458)
T ss_pred EEEC
Confidence 9886
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.12 Score=53.75 Aligned_cols=71 Identities=24% Similarity=0.215 Sum_probs=49.4
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhH----HHHHHcCceecCCCcCCHHhhcCcCCEEE
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF----AEARAAGFTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~----~~A~~~G~~~~~~~~~s~~Ea~~~ADIVi 183 (417)
+++ |+|.|||.|.+|.++|+.|.+. |++|++.++...... +...+.|..... .....+....+|+||
T Consensus 3 ~~~-k~v~iiG~g~~G~~~A~~l~~~------G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~d~vv 73 (450)
T PRK14106 3 LKG-KKVLVVGAGVSGLALAKFLKKL------GAKVILTDEKEEDQLKEALEELGELGIELVL--GEYPEEFLEGVDLVV 73 (450)
T ss_pred cCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchHHHHHHHHHHHhcCCEEEe--CCcchhHhhcCCEEE
Confidence 567 9999999999999999999999 999988877542222 222334654310 112234567899999
Q ss_pred EccC
Q 014834 184 LLIS 187 (417)
Q Consensus 184 Lavp 187 (417)
+++-
T Consensus 74 ~~~g 77 (450)
T PRK14106 74 VSPG 77 (450)
T ss_pred ECCC
Confidence 9765
|
|
| >PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.11 Score=52.11 Aligned_cols=76 Identities=17% Similarity=0.168 Sum_probs=57.3
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHh--hhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEE
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRD--SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~--s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIV 182 (417)
..++| |++.|||-+ ..|.+++.-|.+ . +..|.+.... +.++++.+++||+|
T Consensus 154 i~l~G-k~vvViGrS~~VGkPla~lL~~~~~------~atVtvchs~-------------------T~~l~~~~k~ADIv 207 (284)
T PRK14193 154 VELAG-AHVVVIGRGVTVGRPIGLLLTRRSE------NATVTLCHTG-------------------TRDLAAHTRRADII 207 (284)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHhhccC------CCEEEEeCCC-------------------CCCHHHHHHhCCEE
Confidence 35789 999999976 789999999987 5 6677665321 23678889999999
Q ss_pred EEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 183 LLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 183 iLavpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
|.++.-.. ++. ..++|+|++|++++
T Consensus 208 V~AvGkp~---~i~--~~~ik~GavVIDvG 232 (284)
T PRK14193 208 VAAAGVAH---LVT--ADMVKPGAAVLDVG 232 (284)
T ss_pred EEecCCcC---ccC--HHHcCCCCEEEEcc
Confidence 99988543 222 34578999888754
|
|
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.085 Score=53.63 Aligned_cols=68 Identities=15% Similarity=0.143 Sum_probs=40.2
Q ss_pred EEEEEcc-cchHHHHHHHHHhhhhhhcCCc-------EEEEEecCChhhHHHHHHcCceec-----CCC--cCCHHhhcC
Q 014834 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGSRSFAEARAAGFTEE-----NGT--LGDIYETIS 177 (417)
Q Consensus 113 kIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~-------~ViVg~r~~s~s~~~A~~~G~~~~-----~~~--~~s~~Ea~~ 177 (417)
||+|||. |.+|.+++..|... ++ ++.+.++........+........ .+. ..+..+.++
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~------~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~ 74 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARG------RMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFT 74 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhc------cccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhC
Confidence 6899999 99999999999875 43 365665532211111111110000 000 124467889
Q ss_pred cCCEEEEcc
Q 014834 178 GSDLVLLLI 186 (417)
Q Consensus 178 ~ADIViLav 186 (417)
+||+||++-
T Consensus 75 ~aDiVVitA 83 (324)
T TIGR01758 75 DVDVAILVG 83 (324)
T ss_pred CCCEEEEcC
Confidence 999999974
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.12 Score=54.61 Aligned_cols=69 Identities=28% Similarity=0.187 Sum_probs=48.9
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCh----hhHHHHHHcCceecCCCcCCHHhhcCcCCEEE
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s----~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIVi 183 (417)
+++ ++|.|||.|..|.+.|..|++. |++|.+.++.+. ...+..++.|+... ..+..+....+|+||
T Consensus 14 ~~~-~~v~viG~G~~G~~~A~~L~~~------G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~---~~~~~~~~~~~D~Vv 83 (480)
T PRK01438 14 WQG-LRVVVAGLGVSGFAAADALLEL------GARVTVVDDGDDERHRALAAILEALGATVR---LGPGPTLPEDTDLVV 83 (480)
T ss_pred cCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchhhhHHHHHHHHHcCCEEE---ECCCccccCCCCEEE
Confidence 567 8999999999999999999998 999888775432 11234556787642 112112445799999
Q ss_pred Ecc
Q 014834 184 LLI 186 (417)
Q Consensus 184 Lav 186 (417)
++.
T Consensus 84 ~s~ 86 (480)
T PRK01438 84 TSP 86 (480)
T ss_pred ECC
Confidence 875
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.21 Score=47.71 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=31.4
Q ss_pred hhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEec
Q 014834 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r 148 (417)
+..|+. .+|.|||+|.+|..++++|... |+ ++.+.+.
T Consensus 23 q~~L~~-~~V~ViG~GglGs~ia~~La~~------Gvg~i~lvD~ 60 (212)
T PRK08644 23 LEKLKK-AKVGIAGAGGLGSNIAVALARS------GVGNLKLVDF 60 (212)
T ss_pred HHHHhC-CCEEEECcCHHHHHHHHHHHHc------CCCeEEEEeC
Confidence 578888 9999999999999999999998 77 4555544
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.15 Score=52.34 Aligned_cols=90 Identities=17% Similarity=0.159 Sum_probs=57.0
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec-CCCcCCH-HhhcCcCCEEEEc
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDI-YETISGSDLVLLL 185 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~-~~~~~s~-~Ea~~~ADIViLa 185 (417)
-.| ++|+|+|+|-.|.--.+-.+.. |.+|+..++++ ...+.|++.|.... +....+. +++-+.+|+|+.+
T Consensus 165 ~pG-~~V~I~G~GGlGh~avQ~Aka~------ga~Via~~~~~-~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~t 236 (339)
T COG1064 165 KPG-KWVAVVGAGGLGHMAVQYAKAM------GAEVIAITRSE-EKLELAKKLGADHVINSSDSDALEAVKEIADAIIDT 236 (339)
T ss_pred CCC-CEEEEECCcHHHHHHHHHHHHc------CCeEEEEeCCh-HHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEEC
Confidence 346 8999999998887777777767 88988777764 44778888886431 1111112 2233339999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEE
Q 014834 186 ISDAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 186 vpd~~~~~Vl~eI~~~lk~gaiLi 209 (417)
+++...... .+.|+++-.++
T Consensus 237 v~~~~~~~~----l~~l~~~G~~v 256 (339)
T COG1064 237 VGPATLEPS----LKALRRGGTLV 256 (339)
T ss_pred CChhhHHHH----HHHHhcCCEEE
Confidence 993322223 33455555544
|
|
| >PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.094 Score=52.86 Aligned_cols=80 Identities=19% Similarity=0.189 Sum_probs=55.8
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| |+|.|||-+ ..|.+++.-|.+.+... +..|.+.... ..++++.+++||+||.
T Consensus 155 i~l~G-k~vvViGrS~iVG~Pla~lL~~~~~~~--~atVt~~hs~-------------------t~~l~~~~~~ADIvI~ 212 (295)
T PRK14174 155 IETKG-KHCVVVGRSNIVGKPMANLMLQKLKES--NCTVTICHSA-------------------TKDIPSYTRQADILIA 212 (295)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHhccccC--CCEEEEEeCC-------------------chhHHHHHHhCCEEEE
Confidence 46889 999999977 78999999987610000 5667655421 1356788999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
++.-. .++. ..++|+|++|++++
T Consensus 213 Avg~~---~li~--~~~vk~GavVIDVg 235 (295)
T PRK14174 213 AIGKA---RFIT--ADMVKPGAVVIDVG 235 (295)
T ss_pred ecCcc---CccC--HHHcCCCCEEEEee
Confidence 99643 3332 23458999988754
|
|
| >PF10728 DUF2520: Domain of unknown function (DUF2520); InterPro: IPR018931 This presumed domain is found C-terminal to a Rossmann-like domain suggesting that these proteins are oxidoreductases | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.24 Score=44.08 Aligned_cols=93 Identities=14% Similarity=0.169 Sum_probs=64.5
Q ss_pred EeecCCCCHHHHHHHHHHHHHhCCCc-eeccchhhhhhhhccccchhh-hchHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 014834 263 FAVHQDVDGRATNVALGWSVALGSPF-TFATTLEQEYKSDIFGERGIL-LGAVHGIVESLFRRFTENGMSEDLAYKNTVE 340 (417)
Q Consensus 263 iav~~dvsgea~e~a~~L~~alG~~~-~iettf~~e~~~dl~ge~t~L-~G~~pA~iea~~d~~v~~Gl~~e~A~~~~~q 340 (417)
|+++. +.++.+.+..|+..+|+.. .+. +....+||..+++ |+.+.+++....+.+.++|+++++|++...-
T Consensus 4 ~~iEg--d~~~~~~l~~l~~~lg~~~~~i~-----~~~r~~yHaAav~asNf~~~L~~~a~~ll~~~gi~~~~a~~~L~P 76 (132)
T PF10728_consen 4 FAIEG--DEEALEVLQELAKELGGRPFEID-----SEQRALYHAAAVFASNFLVALYALAAELLEQAGIDFEEALEALLP 76 (132)
T ss_dssp EEEEE--SHHHHHHHHHHHHHTTSEEEE-------GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SHHH--HHHHH
T ss_pred EEEec--CHHHHHHHHHHHHHhCCceEEeC-----HHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCchhHHHHHHH
Confidence 45555 6789999999999999853 233 3455579999876 8899999999999999999999998875544
Q ss_pred HHHHHHHHHHHHhcHHHHHhcccCch
Q 014834 341 CITGIISKIISTQGMLAVYNSFSGED 366 (417)
Q Consensus 341 ~~~~g~~~li~e~G~~~l~~~vss~~ 366 (417)
-+. +..+-+.+.|. .+..+-|-
T Consensus 77 Li~-~t~~n~~~~g~---~~alTGP~ 98 (132)
T PF10728_consen 77 LIR-ETLENILQLGP---ADALTGPA 98 (132)
T ss_dssp HHH-HHHHHHHHS-H---HHH--SCC
T ss_pred HHH-HHHHHHHhcCc---hhccCCCc
Confidence 444 55666666554 36667773
|
; PDB: 3D1L_A 2I76_A 3DFU_A. |
| >PRK15076 alpha-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.08 Score=55.87 Aligned_cols=73 Identities=22% Similarity=0.214 Sum_probs=43.9
Q ss_pred CCEEEEEcccchHHHHHH--HHHhhhhhhcCCcEEEEEecCChhhHHHH--------HHcCc--eecCCCcCCHHhhcCc
Q 014834 111 INQIGVIGWGSQGPAQAQ--NLRDSLAEAKSDIVVKVGLRKGSRSFAEA--------RAAGF--TEENGTLGDIYETISG 178 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~--~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A--------~~~G~--~~~~~~~~s~~Ea~~~ 178 (417)
|+||+|||.|+||.+.+. .+... ..-.+.+|++.+...++ .+.+ ...+. .. ..+.|..+++++
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~--~~l~~~evvLvDid~er-~~~~~~l~~~~~~~~~~~~~i--~~ttD~~eal~d 75 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSV--PALRDAEIALMDIDPER-LEESEIVARKLAESLGASAKI--TATTDRREALQG 75 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhC--ccCCCCEEEEECCCHHH-HHHHHHHHHHHHHhcCCCeEE--EEECCHHHHhCC
Confidence 579999999999976655 55421 01114477766654322 2211 11221 11 113567899999
Q ss_pred CCEEEEccCC
Q 014834 179 SDLVLLLISD 188 (417)
Q Consensus 179 ADIViLavpd 188 (417)
||+||.++-.
T Consensus 76 ADfVv~ti~v 85 (431)
T PRK15076 76 ADYVINAIQV 85 (431)
T ss_pred CCEEeEeeee
Confidence 9999998765
|
|
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.24 Score=50.15 Aligned_cols=68 Identities=13% Similarity=0.154 Sum_probs=42.2
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc--EEEEEecC--ChhhHHHHHHcC-ceecCCC--cCCHHhhcCcCCEEE
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRK--GSRSFAEARAAG-FTEENGT--LGDIYETISGSDLVL 183 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~--~s~s~~~A~~~G-~~~~~~~--~~s~~Ea~~~ADIVi 183 (417)
+||+|||. |++|.++|..|... ++ ++++.+.+ .....+...... ... .+. ..++.+.+++||+||
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~------~~~~elvLiDi~~a~g~alDL~~~~~~~~i-~~~~~~~~~y~~~~daDivv 73 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLN------PLVSELALYDIVNTPGVAADLSHINTPAKV-TGYLGPEELKKALKGADVVV 73 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCCcEEEEEecCccceeehHhHhCCCcceE-EEecCCCchHHhcCCCCEEE
Confidence 58999999 99999999999877 65 55555443 112222222211 111 000 122367899999999
Q ss_pred Ecc
Q 014834 184 LLI 186 (417)
Q Consensus 184 Lav 186 (417)
++.
T Consensus 74 ita 76 (310)
T cd01337 74 IPA 76 (310)
T ss_pred EeC
Confidence 874
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.3 Score=49.63 Aligned_cols=71 Identities=20% Similarity=0.160 Sum_probs=42.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHc--Cceec--CCC-cC-CHHhhcCcCCEEEEc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEE--NGT-LG-DIYETISGSDLVLLL 185 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~--G~~~~--~~~-~~-s~~Ea~~~ADIViLa 185 (417)
+||+|||.|++|.+.|..|... +.+.++.+.+.......-.+.+. +.... +.. .. ...+.+++||+|++.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~----~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvit 76 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQ----GLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVIT 76 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcc----cccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEe
Confidence 5899999999999999999665 11336666665533222222211 11000 000 11 125678999999997
Q ss_pred c
Q 014834 186 I 186 (417)
Q Consensus 186 v 186 (417)
-
T Consensus 77 A 77 (313)
T COG0039 77 A 77 (313)
T ss_pred C
Confidence 5
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.41 Score=48.02 Aligned_cols=93 Identities=22% Similarity=0.144 Sum_probs=62.2
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC--ChhhHHHHHHcCceecCCCcCCHHh--hcCcCCEEEE
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK--GSRSFAEARAAGFTEENGTLGDIYE--TISGSDLVLL 184 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~--~s~s~~~A~~~G~~~~~~~~~s~~E--a~~~ADIViL 184 (417)
.| .+|.|+|.|.+|...++.++.. |.+|++..+. .+...+.+++.|....+....+..+ .....|+||-
T Consensus 172 ~g-~~vlI~G~G~vG~~a~q~ak~~------G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid 244 (355)
T cd08230 172 NP-RRALVLGAGPIGLLAALLLRLR------GFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIE 244 (355)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEE
Confidence 67 8999999999999999999988 8887776663 3455678888887531111011111 2245799999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
++.... .+.+....++++-.++..
T Consensus 245 ~~g~~~---~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 245 ATGVPP---LAFEALPALAPNGVVILF 268 (355)
T ss_pred CcCCHH---HHHHHHHHccCCcEEEEE
Confidence 987432 344555667777665543
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.19 Score=47.37 Aligned_cols=36 Identities=25% Similarity=0.235 Sum_probs=31.1
Q ss_pred hhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEe
Q 014834 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~ 147 (417)
++.|+. +||.|||+|..|..++++|..+ |+ ++.+.+
T Consensus 16 Q~~L~~-s~VlIiG~gglG~evak~La~~------GVg~i~lvD 52 (197)
T cd01492 16 QKRLRS-ARILLIGLKGLGAEIAKNLVLS------GIGSLTILD 52 (197)
T ss_pred HHHHHh-CcEEEEcCCHHHHHHHHHHHHc------CCCEEEEEE
Confidence 578888 9999999999999999999999 87 455554
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.11 Score=54.57 Aligned_cols=67 Identities=28% Similarity=0.288 Sum_probs=47.1
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
.++| ++|.|||+|-.|.+.|+-|++. |++|.+.++..... ....+.|+... ..+. +-+.++|+||..
T Consensus 6 ~~~~-~~i~viG~G~~G~~~a~~l~~~------G~~v~~~D~~~~~~-~~l~~~g~~~~---~~~~-~~~~~~d~vv~s 72 (460)
T PRK01390 6 GFAG-KTVAVFGLGGSGLATARALVAG------GAEVIAWDDNPASR-AKAAAAGITTA---DLRT-ADWSGFAALVLS 72 (460)
T ss_pred ccCC-CEEEEEeecHhHHHHHHHHHHC------CCEEEEECCChhhH-HHHHhcCcccc---CCCh-hHHcCCCEEEEC
Confidence 4678 9999999999999999999998 99988776543322 22345677631 1122 335789998873
|
|
| >PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.13 Score=51.82 Aligned_cols=76 Identities=13% Similarity=0.130 Sum_probs=56.2
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCC----cEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCC
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSD 180 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G----~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~AD 180 (417)
..++| |+|.|||-+ ..|.+++.-|.+. | ..|.+...+ +.++.+.+++||
T Consensus 153 i~l~G-K~vvViGrS~iVGkPla~lL~~~------~~~~~aTVtvchs~-------------------T~nl~~~~~~AD 206 (293)
T PRK14185 153 IETSG-KKCVVLGRSNIVGKPMAQLMMQK------AYPGDCTVTVCHSR-------------------SKNLKKECLEAD 206 (293)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHcC------CCCCCCEEEEecCC-------------------CCCHHHHHhhCC
Confidence 46889 999999987 7899999999876 4 356554321 235778899999
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 181 IViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
+||.++.-... +. ..++|+|++|++++
T Consensus 207 IvIsAvGkp~~---i~--~~~vk~gavVIDvG 233 (293)
T PRK14185 207 IIIAALGQPEF---VK--ADMVKEGAVVIDVG 233 (293)
T ss_pred EEEEccCCcCc---cC--HHHcCCCCEEEEec
Confidence 99999885432 22 34578999988754
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.3 Score=49.29 Aligned_cols=71 Identities=20% Similarity=0.200 Sum_probs=41.9
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhh----HHHHHHc-CceecCCC-cCCHHhhcCcCCEEEE
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS----FAEARAA-GFTEENGT-LGDIYETISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s----~~~A~~~-G~~~~~~~-~~s~~Ea~~~ADIViL 184 (417)
|||+|||. |.+|.+++..|...+ +.+.++.+.++.. .. .+..... -... .+. ..++.+.++++|+||+
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~---~~~~el~L~d~~~-~~~g~alDl~~~~~~~~i-~~~~~~d~~~~l~~~DiVIi 75 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQL---PAGSELSLYDIAP-VTPGVAVDLSHIPTAVKI-KGFSGEDPTPALEGADVVLI 75 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCC---CCccEEEEEecCC-CCcceehhhhcCCCCceE-EEeCCCCHHHHcCCCCEEEE
Confidence 68999999 999999999885421 0133566555542 22 1221100 0111 000 1355678899999999
Q ss_pred ccC
Q 014834 185 LIS 187 (417)
Q Consensus 185 avp 187 (417)
+.-
T Consensus 76 taG 78 (312)
T PRK05086 76 SAG 78 (312)
T ss_pred cCC
Confidence 865
|
|
| >PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.089 Score=52.82 Aligned_cols=76 Identities=18% Similarity=0.188 Sum_probs=56.4
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHh----hhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCC
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRD----SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSD 180 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~----s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~AD 180 (417)
..++| |++.|||-+ ..|.+++.-|.+ . +..|.+.... ..++.+.+++||
T Consensus 153 i~l~G-k~vvViGrS~iVG~Pla~lL~~~~~~~------~AtVt~~hs~-------------------t~~l~~~~~~AD 206 (286)
T PRK14184 153 LSPAG-KKAVVVGRSNIVGKPLALMLGAPGKFA------NATVTVCHSR-------------------TPDLAEECREAD 206 (286)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHhCCcccC------CCEEEEEeCC-------------------chhHHHHHHhCC
Confidence 46889 999999977 789999999987 5 5677665422 135778899999
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 181 IViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
+||.++.-.. ++. ..++++|++|++++
T Consensus 207 IVI~AvG~p~---li~--~~~vk~GavVIDVG 233 (286)
T PRK14184 207 FLFVAIGRPR---FVT--ADMVKPGAVVVDVG 233 (286)
T ss_pred EEEEecCCCC---cCC--HHHcCCCCEEEEee
Confidence 9999996433 232 23468999888654
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.28 Score=52.48 Aligned_cols=96 Identities=16% Similarity=0.202 Sum_probs=66.9
Q ss_pred hccCCCEEEEEcc----------cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcC---------------
Q 014834 107 AFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG--------------- 161 (417)
Q Consensus 107 ~l~gmkkIgIIG~----------G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G--------------- 161 (417)
.++| +||+|+|+ .+-...++..|.+. |.+|.+++..-.. .+..+..+
T Consensus 321 ~~~~-~~VavlGlafK~~tdD~R~Spa~~li~~L~~~------G~~V~~~DP~v~~-~~~~~~~~~~~~~~~~~~~~~~~ 392 (473)
T PLN02353 321 TVSG-KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGD------KAKLSIYDPQVTE-EQIQRDLSMNKFDWDHPRHLQPM 392 (473)
T ss_pred ccCC-CEEEEEeeeecCCCCccccChHHHHHHHHHhC------CCEEEEECCCCCh-HHHHHHhhccccccccccccccc
Confidence 4788 99999998 56778888888888 9998877654221 11111121
Q ss_pred -------ceecCCCcCCHHhhcCcCCEEEEccCCchHHHH-HHHHHhcCCCCcEEEEecCc
Q 014834 162 -------FTEENGTLGDIYETISGSDLVLLLISDAAQADN-YEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 162 -------~~~~~~~~~s~~Ea~~~ADIViLavpd~~~~~V-l~eI~~~lk~gaiLi~a~G~ 214 (417)
+.. +.+..+++++||+|++++.-....++ ++++.+.|++..+|++.-++
T Consensus 393 ~~~~~~~~~~----~~~~~~a~~~aD~vvi~t~~~ef~~l~~~~~~~~m~~~~~viD~rn~ 449 (473)
T PLN02353 393 SPTAVKQVSV----VWDAYEATKGAHGICILTEWDEFKTLDYQKIYDNMQKPAFVFDGRNV 449 (473)
T ss_pred ccccccceee----eCCHHHHhcCCCEEEECCCChHhcccCHHHHHHhccCCCEEEECCCC
Confidence 121 34567899999999999998777653 55677777765577876665
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.31 Score=44.99 Aligned_cols=31 Identities=26% Similarity=0.299 Sum_probs=25.8
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecC
Q 014834 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK 149 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~ 149 (417)
||.|||+|.+|..++++|... |+ ++.+.++.
T Consensus 1 ~VlViG~GglGs~ia~~La~~------Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS------GVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCCeEEEEeCC
Confidence 689999999999999999998 87 46655543
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.25 Score=50.08 Aligned_cols=68 Identities=15% Similarity=0.192 Sum_probs=41.7
Q ss_pred EEEEEcc-cchHHHHHHHHHhhhhhhcCCc--EEEEEecCCh--hhHHHHHHcC-ceecCCCc-C-CHHhhcCcCCEEEE
Q 014834 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGS--RSFAEARAAG-FTEENGTL-G-DIYETISGSDLVLL 184 (417)
Q Consensus 113 kIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s--~s~~~A~~~G-~~~~~~~~-~-s~~Ea~~~ADIViL 184 (417)
||+|||+ |++|.++|..|... ++ ++++.+.... ...+...... ... .+.. . +..+.+++||+||+
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~------~~~~elvL~Di~~a~g~a~DL~~~~~~~~i-~~~~~~~~~~~~~~daDivvi 73 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQ------PYVSELSLYDIAGAAGVAADLSHIPTAASV-KGFSGEEGLENALKGADVVVI 73 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhC------CCCcEEEEecCCCCcEEEchhhcCCcCceE-EEecCCCchHHHcCCCCEEEE
Confidence 7999999 99999999999877 65 5665554321 1122221110 111 0000 1 23678999999999
Q ss_pred ccC
Q 014834 185 LIS 187 (417)
Q Consensus 185 avp 187 (417)
+.-
T Consensus 74 taG 76 (312)
T TIGR01772 74 PAG 76 (312)
T ss_pred eCC
Confidence 754
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.28 Score=49.97 Aligned_cols=90 Identities=17% Similarity=0.212 Sum_probs=57.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHH-cCceecCCCcC-CHH----hhc--CcCCEE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA-AGFTEENGTLG-DIY----ETI--SGSDLV 182 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~-~G~~~~~~~~~-s~~----Ea~--~~ADIV 182 (417)
.++.|+|+|.+|.-.++.++.. |. +|++. +..+...+.|++ .|......... +.. +.. ..+|++
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~------Ga~~Viv~-d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~v 242 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLL------GASVVIVV-DRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVV 242 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHc------CCceEEEe-CCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEE
Confidence 4899999999999988888887 86 55544 444566788888 55442100001 111 222 359999
Q ss_pred EEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 183 LLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 183 iLavpd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
|-|+- ....+++....++++-.+++.
T Consensus 243 ie~~G---~~~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 243 IEAVG---SPPALDQALEALRPGGTVVVV 268 (350)
T ss_pred EECCC---CHHHHHHHHHHhcCCCEEEEE
Confidence 99999 334556666677777765533
|
|
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.12 Score=55.94 Aligned_cols=75 Identities=25% Similarity=0.193 Sum_probs=51.7
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhh-cCcCCEEEEcc
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLLI 186 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea-~~~ADIViLav 186 (417)
+++ +++.|+|.|-+|.+++..|.+. |.+|++.+|..++..+.+.+.+.... ...+..+. ...+|+|+.++
T Consensus 377 ~~~-k~vlIlGaGGagrAia~~L~~~------G~~V~i~nR~~e~a~~la~~l~~~~~--~~~~~~~~~~~~~diiINtT 447 (529)
T PLN02520 377 LAG-KLFVVIGAGGAGKALAYGAKEK------GARVVIANRTYERAKELADAVGGQAL--TLADLENFHPEEGMILANTT 447 (529)
T ss_pred CCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHhCCcee--eHhHhhhhccccCeEEEecc
Confidence 567 8999999999999999999998 98888888876655555555442210 01122222 23578888888
Q ss_pred CCchH
Q 014834 187 SDAAQ 191 (417)
Q Consensus 187 pd~~~ 191 (417)
|....
T Consensus 448 ~vGm~ 452 (529)
T PLN02520 448 SVGMQ 452 (529)
T ss_pred cCCCC
Confidence 86543
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.15 Score=53.16 Aligned_cols=94 Identities=13% Similarity=0.097 Sum_probs=53.7
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcC-ceecC-CCcCCHH-hhcCcCCEEEEccC
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEEN-GTLGDIY-ETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G-~~~~~-~~~~s~~-Ea~~~ADIViLavp 187 (417)
+||+|||. |..|..+.+-|.+. .++++....+..+.-.......- +...+ ....+.+ +.++++|+||+++|
T Consensus 39 ~kVaIvGATG~vG~eLlrlL~~h-----P~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp 113 (381)
T PLN02968 39 KRIFVLGASGYTGAEVRRLLANH-----PDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLP 113 (381)
T ss_pred cEEEEECCCChHHHHHHHHHHhC-----CCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCC
Confidence 79999997 89999999987765 13465544433211100011110 00000 0011222 22588999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
.....++.+.+ +.|..|++.++.
T Consensus 114 ~~~s~~i~~~~----~~g~~VIDlSs~ 136 (381)
T PLN02968 114 HGTTQEIIKAL----PKDLKIVDLSAD 136 (381)
T ss_pred HHHHHHHHHHH----hCCCEEEEcCch
Confidence 87666666553 457778877764
|
|
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.3 Score=51.03 Aligned_cols=22 Identities=18% Similarity=0.084 Sum_probs=20.5
Q ss_pred CEEEEEcc-cchHHHHHHHHHhh
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDS 133 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s 133 (417)
-||+|||. |++|.++|-.|...
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~ 67 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASG 67 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc
Confidence 58999999 99999999999877
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.26 Score=46.44 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=30.7
Q ss_pred hhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEe
Q 014834 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~ 147 (417)
++.|+. .+|.|||+|..|..++++|..+ |+ ++.+.+
T Consensus 14 q~~L~~-s~VlviG~gglGsevak~L~~~------GVg~i~lvD 50 (198)
T cd01485 14 QNKLRS-AKVLIIGAGALGAEIAKNLVLA------GIDSITIVD 50 (198)
T ss_pred HHHHhh-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEE
Confidence 577888 9999999999999999999999 87 455554
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.35 Score=46.43 Aligned_cols=83 Identities=17% Similarity=0.020 Sum_probs=57.8
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC-hhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~-s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
-.|+| ++|.|||.|..|.-=++.|.+. |-+|+|....- +.......+.++...+ ...+.++.. .+++||.
T Consensus 8 ~~l~~-k~VlvvGgG~va~rKa~~ll~~------ga~v~Vvs~~~~~el~~~~~~~~i~~~~-~~~~~~~~~-~~~lvia 78 (210)
T COG1648 8 LDLEG-KKVLVVGGGSVALRKARLLLKA------GADVTVVSPEFEPELKALIEEGKIKWIE-REFDAEDLD-DAFLVIA 78 (210)
T ss_pred EEcCC-CEEEEECCCHHHHHHHHHHHhc------CCEEEEEcCCccHHHHHHHHhcCcchhh-cccChhhhc-CceEEEE
Confidence 56789 9999999999999999999998 98888776553 3333444444422211 123455544 4999999
Q ss_pred ccCCchHHH-HHHH
Q 014834 185 LISDAAQAD-NYEK 197 (417)
Q Consensus 185 avpd~~~~~-Vl~e 197 (417)
+|.|....+ ++..
T Consensus 79 At~d~~ln~~i~~~ 92 (210)
T COG1648 79 ATDDEELNERIAKA 92 (210)
T ss_pred eCCCHHHHHHHHHH
Confidence 999988754 4443
|
|
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.29 Score=48.58 Aligned_cols=161 Identities=18% Similarity=0.219 Sum_probs=92.0
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEec-CChhhH-HHH------HHcCceecCCCcCCHHhhcCcCCE
Q 014834 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLR-KGSRSF-AEA------RAAGFTEENGTLGDIYETISGSDL 181 (417)
Q Consensus 111 mkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r-~~s~s~-~~A------~~~G~~~~~~~~~s~~Ea~~~ADI 181 (417)
|+||+|+|+ |.||..+.+.+... .++++..... .++.+. ..+ ...|+.. ..+...+..++|+
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~-----~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v----~~~~~~~~~~~DV 72 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEA-----PDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPV----TDDLLLVKADADV 72 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcC-----CCceEEEEEecCCccccccchhhhccccccCcee----ecchhhcccCCCE
Confidence 479999998 99999999999876 1455544443 322211 101 1223332 2346677889999
Q ss_pred EEEccCCchHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhH--HHHHhhcccccC-CC
Q 014834 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSV--RRLYVQGKEING-AG 258 (417)
Q Consensus 182 ViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~v--r~ly~~G~~~~G-~G 258 (417)
+|=-+-|....+.++-...+= -.+|+=..||+-..++. ...+.+.+++ .++||.+--+. -.+-++--.+.+ .-
T Consensus 73 ~IDFT~P~~~~~~l~~~~~~~--~~lVIGTTGf~~e~~~~-l~~~a~~v~v-v~a~NfSiGvnll~~l~~~aak~l~~~D 148 (266)
T COG0289 73 LIDFTTPEATLENLEFALEHG--KPLVIGTTGFTEEQLEK-LREAAEKVPV-VIAPNFSLGVNLLFKLAEQAAKVLDDYD 148 (266)
T ss_pred EEECCCchhhHHHHHHHHHcC--CCeEEECCCCCHHHHHH-HHHHHhhCCE-EEeccchHHHHHHHHHHHHHHHhcCCCC
Confidence 999999988877776544331 12566678997543332 1122234444 46888875431 111111101111 12
Q ss_pred ceEEEeecC-----CCCHHHHHHHHHHHHHhC
Q 014834 259 INSSFAVHQ-----DVDGRATNVALGWSVALG 285 (417)
Q Consensus 259 v~~liav~~-----dvsgea~e~a~~L~~alG 285 (417)
+-- +-.|. -.||.|+.++..+.++.|
T Consensus 149 iEI-iE~HHr~K~DAPSGTAl~lae~ia~~~~ 179 (266)
T COG0289 149 IEI-IEAHHRHKKDAPSGTALKLAEAIAEARG 179 (266)
T ss_pred EEe-hhhhcccCCCCCcHHHHHHHHHHHHhhc
Confidence 222 22222 367889999999988888
|
|
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.16 Score=50.44 Aligned_cols=68 Identities=19% Similarity=0.143 Sum_probs=51.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~ 190 (417)
+++.|||.|-.+.|++..|.+. |. +|.|.+|..++..+.++..+... ..+. ....+|+||.+||...
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~------g~~~i~i~nR~~~~a~~la~~~~~~~----~~~~--~~~~~dlvINaTp~Gm 190 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDA------GFTDGTIVARNEKTGKALAELYGYEW----RPDL--GGIEADILVNVTPIGM 190 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHhCCcc----hhhc--ccccCCEEEECCcccc
Confidence 6899999999999999999988 87 68999998777767776654331 0011 1256899999999654
Q ss_pred H
Q 014834 191 Q 191 (417)
Q Consensus 191 ~ 191 (417)
.
T Consensus 191 ~ 191 (272)
T PRK12550 191 A 191 (272)
T ss_pred C
Confidence 3
|
|
| >PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=93.98 E-value=1.6 Score=45.98 Aligned_cols=161 Identities=17% Similarity=0.087 Sum_probs=95.5
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHH--Hc--Cce----------------ecCCCc
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR--AA--GFT----------------EENGTL 169 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~--~~--G~~----------------~~~~~~ 169 (417)
|.+|-|+|.|..+--+|..++.. +- .|-+..|...++....+ +. +.. ..|...
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~------~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~ 74 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKH------GNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVF 74 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhc------cCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhh
Confidence 67899999999999999999976 43 45556675444432222 22 111 002223
Q ss_pred CCHHhhcCcCCEEEEccCCchHHHHHHHHHhc-CCC-CcEEEEecCchhhhhhh-cccCCCCCccEEE----------ec
Q 014834 170 GDIYETISGSDLVLLLISDAAQADNYEKIFSC-MKP-NSILGLSHGFLLGHLQS-IGLDFPKNIGVIA----------VC 236 (417)
Q Consensus 170 ~s~~Ea~~~ADIViLavpd~~~~~Vl~eI~~~-lk~-gaiLi~a~G~~i~~~~~-~~i~~~~dv~VI~----------v~ 236 (417)
.+.+++..+=|.+|||||-.+..+|+++|-+. |+. .++|.++..|.-+.+.+ ..-....++.||. +.
T Consensus 75 ~~~~~i~g~WdtlILavtaDAY~~VL~ql~~~~L~~vk~iVLvSPtfGS~~lv~~~l~~~~~~~EVISFStY~gdTr~~d 154 (429)
T PF10100_consen 75 QDYEEIEGEWDTLILAVTADAYLDVLQQLPWEVLKRVKSIVLVSPTFGSHLLVKGFLNDLGPDAEVISFSTYYGDTRWSD 154 (429)
T ss_pred cCHHHhcccccEEEEEechHHHHHHHHhcCHHHHhhCCEEEEECcccchHHHHHHHHHhcCCCceEEEeecccccceecc
Confidence 46777888889999999999999999876432 322 23555666553211111 0012234677775 44
Q ss_pred cCCCchhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 237 Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~ 287 (417)
...|-.+.-...++ ..++. .....-..++....++..+|-.
T Consensus 155 ~~~~~~vlt~~vK~---------kiYig-St~~~s~~~~~l~~~~~~~gI~ 195 (429)
T PF10100_consen 155 GEQPNRVLTTAVKK---------KIYIG-STHSNSPELDKLCRLLAQLGIQ 195 (429)
T ss_pred CCCcceehhhhhhc---------eEEEE-eCCCCChHHHHHHHHHHHcCCe
Confidence 44554554333332 12233 2233446778888999999865
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.35 Score=49.51 Aligned_cols=88 Identities=16% Similarity=0.171 Sum_probs=56.8
Q ss_pred hhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCC---------------------hhhHH---HHHH
Q 014834 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG---------------------SRSFA---EARA 159 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~---------------------s~s~~---~A~~ 159 (417)
++.|+. .||.|||+|-+|..+|.+|... |+ ++.+.++.. .+... ..++
T Consensus 19 Q~~L~~-~~VlVvG~GglGs~va~~La~a------Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~ 91 (339)
T PRK07688 19 QQKLRE-KHVLIIGAGALGTANAEMLVRA------GVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEE 91 (339)
T ss_pred HHHhcC-CcEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHH
Confidence 577888 9999999999999999999998 87 666665531 11111 1111
Q ss_pred c--Ccee--cCCC--cCCHHhhcCcCCEEEEccCCchHHHHHHHHH
Q 014834 160 A--GFTE--ENGT--LGDIYETISGSDLVLLLISDAAQADNYEKIF 199 (417)
Q Consensus 160 ~--G~~~--~~~~--~~s~~Ea~~~ADIViLavpd~~~~~Vl~eI~ 199 (417)
. .+.. .... ..+..+.++++|+||.++-+......+.+..
T Consensus 92 inp~v~v~~~~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~ 137 (339)
T PRK07688 92 INSDVRVEAIVQDVTAEELEELVTGVDLIIDATDNFETRFIVNDAA 137 (339)
T ss_pred HCCCcEEEEEeccCCHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHH
Confidence 1 1111 0011 1234577899999999988776666666543
|
|
| >PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.037 Score=50.04 Aligned_cols=86 Identities=15% Similarity=0.219 Sum_probs=50.7
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
+..+| +||++||+ +.+ ++..|+.. +.++.|.+++... .. ....++. ....++++++||+|++.
T Consensus 7 ~~~~~-~~V~~VG~--f~P-~~~~l~~~------~~~v~v~d~~~~~-~~-~~~~~~~-----~~~~~~~l~~aD~viiT 69 (147)
T PF04016_consen 7 EIGPG-DKVGMVGY--FQP-LVEKLKER------GAEVRVFDLNPDN-IG-EEPGDVP-----DEDAEEILPWADVVIIT 69 (147)
T ss_dssp CTTTT-SEEEEES----HC-CHHHHCCC------CSEEEEEESSGGG----SSCT-EE-----GGGHHHHGGG-SEEEEE
T ss_pred hhcCC-CEEEEEcC--cHH-HHHHHhcC------CCCEEEEECCCCC-CC-CCCCcCC-----HHHHHHHHccCCEEEEE
Confidence 66778 99999997 333 77788766 8899988876422 11 1112232 35688999999999875
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEE
Q 014834 186 ISDAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 186 vpd~~~~~Vl~eI~~~lk~gaiLi 209 (417)
-. ......++.|..+.++++.++
T Consensus 70 Gs-TlvN~Ti~~iL~~~~~~~~vi 92 (147)
T PF04016_consen 70 GS-TLVNGTIDDILELARNAREVI 92 (147)
T ss_dssp CH-HCCTTTHHHHHHHTTTSSEEE
T ss_pred ee-eeecCCHHHHHHhCccCCeEE
Confidence 33 122234445555555455443
|
; PDB: 3L5O_B 3NPG_A. |
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.23 Score=53.02 Aligned_cols=70 Identities=19% Similarity=0.143 Sum_probs=50.2
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
.+.| ++|.|+|+|..|.+.++-|+.. |.+|++.++... ..+.+++.|+.... .....+.++++|+||..-
T Consensus 9 ~~~~-~~v~V~G~G~sG~aa~~~L~~~------G~~v~~~D~~~~-~~~~l~~~g~~~~~--~~~~~~~l~~~D~VV~Sp 78 (488)
T PRK03369 9 LLPG-APVLVAGAGVTGRAVLAALTRF------GARPTVCDDDPD-ALRPHAERGVATVS--TSDAVQQIADYALVVTSP 78 (488)
T ss_pred ccCC-CeEEEEcCCHHHHHHHHHHHHC------CCEEEEEcCCHH-HHHHHHhCCCEEEc--CcchHhHhhcCCEEEECC
Confidence 4467 9999999999999999999988 999988765433 34445667875411 112345577899998863
|
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.18 Score=51.58 Aligned_cols=87 Identities=23% Similarity=0.205 Sum_probs=53.0
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCc---EEEEEecCCh---hhHHHHHHcCceecCCCc--CCHHhhcCcCCE
Q 014834 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGS---RSFAEARAAGFTEENGTL--GDIYETISGSDL 181 (417)
Q Consensus 111 mkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~---~ViVg~r~~s---~s~~~A~~~G~~~~~~~~--~s~~Ea~~~ADI 181 (417)
|.+|+|||. |..|..+.+-|.++ ++ ++. .....+ +... -.|.. -.+ .+..+ ++++|+
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~------~hP~~~l~-~v~s~~~aG~~l~---~~~~~---l~~~~~~~~~-~~~vD~ 69 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEER------DFPVGTLH-LLASSESAGHSVP---FAGKN---LRVREVDSFD-FSQVQL 69 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhC------CCCceEEE-EEECcccCCCeec---cCCcc---eEEeeCChHH-hcCCCE
Confidence 368999996 99999999999976 54 222 222211 1111 11110 011 12333 478999
Q ss_pred EEEccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 182 ViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
||+++|.....++.+++.. .|..+++.+|.
T Consensus 70 vFla~p~~~s~~~v~~~~~---~G~~VIDlS~~ 99 (336)
T PRK05671 70 AFFAAGAAVSRSFAEKARA---AGCSVIDLSGA 99 (336)
T ss_pred EEEcCCHHHHHHHHHHHHH---CCCeEEECchh
Confidence 9999997666666655533 57778877764
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.33 Score=46.54 Aligned_cols=87 Identities=22% Similarity=0.248 Sum_probs=53.0
Q ss_pred hhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecC------------------C-hhhH---HHHHHcC
Q 014834 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK------------------G-SRSF---AEARAAG 161 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~------------------~-s~s~---~~A~~~G 161 (417)
++.|+. ++|.|||+|..|..++++|... |+ ++++.+.. + .+.. +..++..
T Consensus 16 q~~L~~-~~VlivG~GglGs~va~~La~~------Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n 88 (228)
T cd00757 16 QEKLKN-ARVLVVGAGGLGSPAAEYLAAA------GVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAIN 88 (228)
T ss_pred HHHHhC-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhC
Confidence 477888 9999999999999999999998 77 44444321 0 0111 1111111
Q ss_pred --c--eecCCCc--CCHHhhcCcCCEEEEccCCchHHHHHHHH
Q 014834 162 --F--TEENGTL--GDIYETISGSDLVLLLISDAAQADNYEKI 198 (417)
Q Consensus 162 --~--~~~~~~~--~s~~Ea~~~ADIViLavpd~~~~~Vl~eI 198 (417)
+ ...+... .+..+.++++|+||.|+-+......+.+.
T Consensus 89 p~~~i~~~~~~i~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~ 131 (228)
T cd00757 89 PDVEIEAYNERLDAENAEELIAGYDLVLDCTDNFATRYLINDA 131 (228)
T ss_pred CCCEEEEecceeCHHHHHHHHhCCCEEEEcCCCHHHHHHHHHH
Confidence 1 1101111 12346788899999998876655555554
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.38 Score=48.09 Aligned_cols=99 Identities=16% Similarity=0.164 Sum_probs=46.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH---------cCceecCCCcCCHHhhcCcCCEE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---------AGFTEENGTLGDIYETISGSDLV 182 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~---------~G~~~~~~~~~s~~Ea~~~ADIV 182 (417)
+||+|||.|.+-.....-.+.. +.+..| .+.+.++...+.+++ .+.....+...+...-+.+.|+|
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~----~~~~~v-~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV 196 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQH----GPGARV-HNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVV 196 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--H----TT--EE-EEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEE
T ss_pred ceEEEEcCCCcchHHHHHHHHh----CCCCeE-EEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEE
Confidence 5999999999987755544443 112334 344555544444432 11111100011222235688999
Q ss_pred EEccCCc----hHHHHHHHHHhcCCCCcEEE--EecCch
Q 014834 183 LLLISDA----AQADNYEKIFSCMKPNSILG--LSHGFL 215 (417)
Q Consensus 183 iLavpd~----~~~~Vl~eI~~~lk~gaiLi--~a~G~~ 215 (417)
+++--.. .-.++++.|..+|++|+.|+ .++|..
T Consensus 197 ~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~GlR 235 (276)
T PF03059_consen 197 FLAALVGMDAEPKEEILEHLAKHMAPGARLVVRSAHGLR 235 (276)
T ss_dssp EE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE--GGG
T ss_pred EEhhhcccccchHHHHHHHHHhhCCCCcEEEEecchhhH
Confidence 9986655 34579999999999999776 677763
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.33 Score=48.74 Aligned_cols=62 Identities=23% Similarity=0.215 Sum_probs=40.7
Q ss_pred EEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhHHHHHH----c-----CceecCCCcCCHHhhcCcCCEEEE
Q 014834 116 VIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA----A-----GFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 116 IIG~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~~~A~~----~-----G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
|||.|.+|.++|..|... ++ ++.+.+...+.....+.+ . .... ..+..+.+++||+||+
T Consensus 1 iIGaG~VG~~~a~~l~~~------~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i----~~~~~~~~~daDivVi 70 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQ------GIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKI----RSGDYSDCKDADLVVI 70 (299)
T ss_pred CCCcCHHHHHHHHHHHhc------CCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEE----ecCCHHHHCCCCEEEE
Confidence 699999999999999887 66 566666544333323322 1 1121 1234578899999999
Q ss_pred ccC
Q 014834 185 LIS 187 (417)
Q Consensus 185 avp 187 (417)
+.-
T Consensus 71 tag 73 (299)
T TIGR01771 71 TAG 73 (299)
T ss_pred CCC
Confidence 744
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.14 Score=53.78 Aligned_cols=90 Identities=18% Similarity=0.289 Sum_probs=50.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhh--h--hcCCcEEE-EEecCChhhHHHHHHcCceecCCCcCCHHhhcC--cCCEEEE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLA--E--AKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~--~--~~~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~--~ADIViL 184 (417)
.+|||||+|.+|..+++.|.+... . .|.++++. |.+++..+. +.....+.. ...+.++++. +.|+|+.
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~-~~~~~~~~~----~~~d~~~ll~d~~iDvVve 78 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKD-RGVDLPGIL----LTTDPEELVNDPDIDIVVE 78 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhc-cCCCCcccc----eeCCHHHHhhCCCCCEEEE
Confidence 489999999999999988865411 1 11234433 334432221 101011112 1457888885 4699999
Q ss_pred ccCCch-HHHHHHHHHhcCCCCcEEE
Q 014834 185 LISDAA-QADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 185 avpd~~-~~~Vl~eI~~~lk~gaiLi 209 (417)
++++.. +.+.. ...|+.|+-|+
T Consensus 79 ~tg~~~~~~~~~---~~aL~~GkhVV 101 (426)
T PRK06349 79 LMGGIEPARELI---LKALEAGKHVV 101 (426)
T ss_pred CCCCchHHHHHH---HHHHHCCCeEE
Confidence 987643 22333 34455666544
|
|
| >PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.32 Score=49.17 Aligned_cols=118 Identities=8% Similarity=0.141 Sum_probs=78.2
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCc--CCEEEEccCC
Q 014834 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~--ADIViLavpd 188 (417)
.||.|.| .|.-|..+-..++.. |-+++.|.....- ..+-.|+.. ..++.|+-.. .|+.++++|.
T Consensus 13 ~~v~~~gi~~~~~~~~~~~~~~y------gt~~~~gV~p~~~---~~~i~G~~~----y~sv~dlp~~~~~DlAvI~vPa 79 (300)
T PLN00125 13 TRVICQGITGKNGTFHTEQAIEY------GTKMVGGVTPKKG---GTEHLGLPV----FNTVAEAKAETKANASVIYVPP 79 (300)
T ss_pred CeEEEecCCCHHHHHHHHHHHHh------CCcEEEEECCCCC---CceEcCeec----cCCHHHHhhccCCCEEEEecCH
Confidence 6888988 688899998888888 8888877655310 011257765 6788887765 7999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchh
Q 014834 189 AAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPS 243 (417)
Q Consensus 189 ~~~~~Vl~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~ 243 (417)
....+.+++.... .-..+|++++||.-...++.......+-.+-.+-||+.|..
T Consensus 80 ~~v~~al~e~~~~-Gvk~~vIisaGf~e~g~~~~~~~~ar~~girviGPNc~Gii 133 (300)
T PLN00125 80 PFAAAAILEAMEA-ELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGII 133 (300)
T ss_pred HHHHHHHHHHHHc-CCCEEEEECCCCCcccHHHHHHHHHhhcCCEEECCCCceee
Confidence 9999988876542 12347889999964322211111112223445568877654
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.3 Score=48.93 Aligned_cols=85 Identities=16% Similarity=0.189 Sum_probs=60.1
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCc
Q 014834 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (417)
Q Consensus 110 gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~ 189 (417)
| ++|+|||--.=-..+++.|.+. |++|.+..-+++. . ...|+.. +.+.++++++||+|++.+|+.
T Consensus 2 ~-~~~~v~ggd~r~~~~~~~l~~~------G~~v~~~g~~~~~-~---~~~g~~~----~~~~~~~~~~ad~ii~~~p~~ 66 (296)
T PRK08306 2 G-KHIAVIGGDARQLELIRKLVEL------GAKVSLVGFDQLD-H---GFTGATK----SSSLEEALSDVDVIILPVPGT 66 (296)
T ss_pred C-cEEEEEcCcHHHHHHHHHHHHC------CCEEEEEeccccc-c---ccCCcee----eccHHHHhccCCEEEECCccc
Confidence 5 8999999888788899999998 9998875433221 1 2347764 457788999999999998863
Q ss_pred hH----HH-------HH-HHHHhcCCCCcEEE
Q 014834 190 AQ----AD-------NY-EKIFSCMKPNSILG 209 (417)
Q Consensus 190 ~~----~~-------Vl-~eI~~~lk~gaiLi 209 (417)
.. .. .+ .+....|++++++.
T Consensus 67 ~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~ 98 (296)
T PRK08306 67 NDEGNVDTVFSNEKLVLTEELLELTPEHCTIF 98 (296)
T ss_pred cCCceeeccccccCCcchHHHHHhcCCCCEEE
Confidence 11 01 11 35677889997544
|
|
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.64 Score=45.13 Aligned_cols=90 Identities=16% Similarity=0.104 Sum_probs=58.7
Q ss_pred ccccchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhH-HHHHHcCceecCCCcCCHHhhcCc
Q 014834 100 LFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEENGTLGDIYETISG 178 (417)
Q Consensus 100 ~f~~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~-~~A~~~G~~~~~~~~~s~~Ea~~~ 178 (417)
+|+.. -.++| ++|-|||.|.+|..=+..|.+. |.+|.|....-.+.. +.+....+....+ ..+..+ +.+
T Consensus 16 ~~pi~-l~~~~-~~VLVVGGG~VA~RK~~~Ll~~------gA~VtVVap~i~~el~~l~~~~~i~~~~r-~~~~~d-l~g 85 (223)
T PRK05562 16 YMFIS-LLSNK-IKVLIIGGGKAAFIKGKTFLKK------GCYVYILSKKFSKEFLDLKKYGNLKLIKG-NYDKEF-IKD 85 (223)
T ss_pred EeeeE-EECCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCCCCHHHHHHHhCCCEEEEeC-CCChHH-hCC
Confidence 34443 55668 8999999999999999999998 888877654433333 3333223332111 123333 578
Q ss_pred CCEEEEccCCchHHHHHHHHH
Q 014834 179 SDLVLLLISDAAQADNYEKIF 199 (417)
Q Consensus 179 ADIViLavpd~~~~~Vl~eI~ 199 (417)
+++||.||.|....+-+.+..
T Consensus 86 ~~LViaATdD~~vN~~I~~~a 106 (223)
T PRK05562 86 KHLIVIATDDEKLNNKIRKHC 106 (223)
T ss_pred CcEEEECCCCHHHHHHHHHHH
Confidence 999999999988765444443
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.23 Score=51.66 Aligned_cols=70 Identities=21% Similarity=0.180 Sum_probs=47.4
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCh---hhHHHHHHcCceecCCCcCCHHhhcCc-CCEEE
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS---RSFAEARAAGFTEENGTLGDIYETISG-SDLVL 183 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s---~s~~~A~~~G~~~~~~~~~s~~Ea~~~-ADIVi 183 (417)
++| ++|.|+|.|.+|.+.|+.|++. |.+|++.++... ...+...+.|+....+ ....+...+ .|+||
T Consensus 3 ~~~-k~v~v~G~g~~G~s~a~~l~~~------G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~--~~~~~~~~~~~d~vV 73 (447)
T PRK02472 3 YQN-KKVLVLGLAKSGYAAAKLLHKL------GANVTVNDGKPFSENPEAQELLEEGIKVICG--SHPLELLDEDFDLMV 73 (447)
T ss_pred cCC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEEcCCCccchhHHHHHHhcCCEEEeC--CCCHHHhcCcCCEEE
Confidence 567 9999999999999999999999 999987765422 2223344557653100 123344444 89888
Q ss_pred Ecc
Q 014834 184 LLI 186 (417)
Q Consensus 184 Lav 186 (417)
...
T Consensus 74 ~s~ 76 (447)
T PRK02472 74 KNP 76 (447)
T ss_pred ECC
Confidence 854
|
|
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.19 Score=53.51 Aligned_cols=70 Identities=26% Similarity=0.265 Sum_probs=49.1
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhh---HHHHHHcCceecCCCcCCHHhhcCcCCEEE
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS---FAEARAAGFTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s---~~~A~~~G~~~~~~~~~s~~Ea~~~ADIVi 183 (417)
.+.+ |||.|+|+|.-|.+.++.|++. |..|++.+.+.... .......++....+.. ..+...++|+|+
T Consensus 4 ~~~~-~kv~V~GLG~sG~a~a~~L~~~------G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~--~~~~~~~~d~vV 74 (448)
T COG0771 4 DFQG-KKVLVLGLGKSGLAAARFLLKL------GAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSH--DDEDLAEFDLVV 74 (448)
T ss_pred cccC-CEEEEEecccccHHHHHHHHHC------CCeEEEEcCCCCccchhhhhhhccCceeecCcc--chhccccCCEEE
Confidence 4556 9999999999999999999999 99999887543321 1222345655422221 226678899999
Q ss_pred Ec
Q 014834 184 LL 185 (417)
Q Consensus 184 La 185 (417)
+.
T Consensus 75 ~S 76 (448)
T COG0771 75 KS 76 (448)
T ss_pred EC
Confidence 85
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.33 Score=51.39 Aligned_cols=74 Identities=24% Similarity=0.218 Sum_probs=52.4
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCh--------------------hhHHHHHHcCceecCC
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEENG 167 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s--------------------~s~~~A~~~G~~~~~~ 167 (417)
-+| ++|.|||.|..|.+.|..|++. |++|++..+... ...+..++.|+...-+
T Consensus 139 ~~~-~~V~IIG~GpaGl~aA~~l~~~------G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~ 211 (467)
T TIGR01318 139 PTG-KRVAVIGAGPAGLACADILARA------GVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLN 211 (467)
T ss_pred CCC-CeEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECC
Confidence 367 9999999999999999999998 999888765431 1245567788754211
Q ss_pred C-c---CCHHhhcCcCCEEEEccCC
Q 014834 168 T-L---GDIYETISGSDLVLLLISD 188 (417)
Q Consensus 168 ~-~---~s~~Ea~~~ADIViLavpd 188 (417)
+ + ...++.....|.||+++--
T Consensus 212 ~~v~~~~~~~~~~~~~D~vilAtGa 236 (467)
T TIGR01318 212 CEVGRDISLDDLLEDYDAVFLGVGT 236 (467)
T ss_pred CEeCCccCHHHHHhcCCEEEEEeCC
Confidence 1 1 1334555679999998753
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.46 Score=49.04 Aligned_cols=88 Identities=10% Similarity=0.080 Sum_probs=55.0
Q ss_pred hhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecC-------------------ChhhHHHHHHc----
Q 014834 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK-------------------GSRSFAEARAA---- 160 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~-------------------~s~s~~~A~~~---- 160 (417)
++.|+. ++|.|||+|-.|..++.+|... |+ ++.+.++. ..+....++..
T Consensus 130 q~~l~~-~~VlvvG~GG~Gs~ia~~La~~------Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n 202 (376)
T PRK08762 130 QRRLLE-ARVLLIGAGGLGSPAALYLAAA------GVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALN 202 (376)
T ss_pred HHHHhc-CcEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHC
Confidence 467888 9999999999999999999998 87 56665543 11221111111
Q ss_pred -Ccee--cCCCc--CCHHhhcCcCCEEEEccCCchHHHHHHHHH
Q 014834 161 -GFTE--ENGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (417)
Q Consensus 161 -G~~~--~~~~~--~s~~Ea~~~ADIViLavpd~~~~~Vl~eI~ 199 (417)
.+.. ..... .+..+.++++|+||.++-.......+.+..
T Consensus 203 p~v~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~ 246 (376)
T PRK08762 203 PDVQVEAVQERVTSDNVEALLQDVDVVVDGADNFPTRYLLNDAC 246 (376)
T ss_pred CCCEEEEEeccCChHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 1211 01111 123457789999999987655554555543
|
|
| >PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.32 Score=48.92 Aligned_cols=80 Identities=11% Similarity=0.175 Sum_probs=55.8
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| |++.|||-+ ..|.+++.-|.+..+. .+..|.+.... +.++++.+++||+||.
T Consensus 149 i~l~G-k~vvViGrS~iVGkPla~lL~~~~~~--~~AtVtvchs~-------------------T~~l~~~~~~ADIvV~ 206 (287)
T PRK14181 149 IPLHG-RHVAIVGRSNIVGKPLAALLMQKHPD--TNATVTLLHSQ-------------------SENLTEILKTADIIIA 206 (287)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHhCcCC--CCCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 46889 999999977 7899999999865000 02355544221 2367888999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
++.-.. ++. ..++|+|++|++++
T Consensus 207 AvG~p~---~i~--~~~ik~GavVIDvG 229 (287)
T PRK14181 207 AIGVPL---FIK--EEMIAEKAVIVDVG 229 (287)
T ss_pred ccCCcC---ccC--HHHcCCCCEEEEec
Confidence 997543 222 34578999988754
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.33 Score=53.48 Aligned_cols=74 Identities=20% Similarity=0.129 Sum_probs=52.8
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCh--------------------hhHHHHHHcCceecCC
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEENG 167 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s--------------------~s~~~A~~~G~~~~~~ 167 (417)
-+| ++|+|||.|..|.+.|..|++. |++|+++.+.+. ...+...+.|+...-+
T Consensus 308 ~~~-kkVaIIG~GpaGl~aA~~L~~~------G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~ 380 (639)
T PRK12809 308 PRS-EKVAVIGAGPAGLGCADILARA------GVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLN 380 (639)
T ss_pred CCC-CEEEEECcCHHHHHHHHHHHHc------CCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcC
Confidence 358 9999999999999999999998 999888876531 1234556677643211
Q ss_pred C----cCCHHhhcCcCCEEEEccCC
Q 014834 168 T----LGDIYETISGSDLVLLLISD 188 (417)
Q Consensus 168 ~----~~s~~Ea~~~ADIViLavpd 188 (417)
+ ..+.+++....|.||+++--
T Consensus 381 ~~v~~~~~~~~l~~~~DaV~latGa 405 (639)
T PRK12809 381 CEIGRDITFSDLTSEYDAVFIGVGT 405 (639)
T ss_pred CccCCcCCHHHHHhcCCEEEEeCCC
Confidence 1 12455666789999998753
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.61 Score=41.00 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=24.9
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEe
Q 014834 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~ 147 (417)
||.|||+|.+|..++++|... |+ ++.+.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~------Gv~~i~ivD 30 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS------GVGKITLID 30 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC------CCCEEEEEc
Confidence 589999999999999999998 87 555554
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.45 Score=48.39 Aligned_cols=157 Identities=12% Similarity=0.049 Sum_probs=89.1
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 014834 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~ 190 (417)
.||+||| -|-.|.-+.+-|.+. ..+++. ..... +. +. ..+.+++++++|++|+++|+..
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~H-----P~~el~-~l~s~-~~--------~~-----~~~~~~~~~~~D~vFlalp~~~ 61 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGR-----DDIELL-SIAPD-RR--------KD-----AAERAKLLNAADVAILCLPDDA 61 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCC-----CCeEEE-EEecc-cc--------cC-----cCCHhHhhcCCCEEEECCCHHH
Confidence 5899999 578888888888765 123432 22211 11 22 2355677789999999999988
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeecCCCC
Q 014834 191 QADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (417)
Q Consensus 191 ~~~Vl~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~dvs 270 (417)
..++.+++. ..|..|++.+|. + .+.+ +++.+.|.-... .|+.... ... |+ +....
T Consensus 62 s~~~~~~~~---~~g~~VIDlSad---f------Rl~~--~~~yglPEln~~-~~~~i~~--------a~l-IA-nPgC~ 116 (310)
T TIGR01851 62 AREAVSLVD---NPNTCIIDASTA---Y------RTAD--DWAYGFPELAPG-QREKIRN--------SKR-IA-NPGCY 116 (310)
T ss_pred HHHHHHHHH---hCCCEEEECChH---H------hCCC--CCeEEccccCHH-HHHhhcc--------CCE-EE-CCCCH
Confidence 887776653 357788887764 1 1112 566777754332 2222222 222 33 34344
Q ss_pred HHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHHHHHHHH
Q 014834 271 GRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESLF 321 (417)
Q Consensus 271 gea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA~iea~~ 321 (417)
..+.-+++.=+...|.. + ....-.+++.+..||++-...+.+.
T Consensus 117 aTa~~LaL~PL~~~~li---~-----~~~~~~~~a~SG~SGAGr~~~~~l~ 159 (310)
T TIGR01851 117 PTGFIALMRPLVEAGIL---P-----ADFPITINAVSGYSGGGKAMIADYE 159 (310)
T ss_pred HHHHHHHHHHHHHcCCc---c-----ccceEEEEeccccCccChhhhHHhh
Confidence 44444444444444432 0 1111246666777777777655544
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.41 Score=48.64 Aligned_cols=154 Identities=14% Similarity=0.071 Sum_probs=85.5
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCC-cEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCc
Q 014834 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G-~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~ 189 (417)
.||+||| .|..|..+.+-|.+. . +++.....+ +.. . ..+.++..+++|+||+|+|..
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~h------p~~~l~~~~s~-~~~------~--------~~~~~~~~~~~DvvFlalp~~ 61 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGR------SDIELLSIPEA-KRK------D--------AAARRELLNAADVAILCLPDD 61 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcC------CCeEEEEEecC-CCC------c--------ccCchhhhcCCCEEEECCCHH
Confidence 6899999 799999999988765 3 243322221 111 0 112345567899999999998
Q ss_pred hHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeecCCC
Q 014834 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (417)
Q Consensus 190 ~~~~Vl~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~dv 269 (417)
...++.+++.. .|..|++.++- + .+.+ +++.+.|.--.. .|+..+. ... ++ +...
T Consensus 62 ~s~~~~~~~~~---~g~~VIDlSad---f------Rl~~--~~~yglPEvn~~-~~~~i~~--------~~~-Ia-nPgC 116 (313)
T PRK11863 62 AAREAVALIDN---PATRVIDASTA---H------RTAP--GWVYGFPELAPG-QRERIAA--------AKR-VA-NPGC 116 (313)
T ss_pred HHHHHHHHHHh---CCCEEEECChh---h------hcCC--CCeEEcCccCHH-HHHHhhc--------CCe-EE-cCCc
Confidence 88887777643 57888877763 1 1222 566777744222 2333332 222 33 3333
Q ss_pred CHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHHHHHH
Q 014834 270 DGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVES 319 (417)
Q Consensus 270 sgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA~iea 319 (417)
...+.-+++.=+...|.. ++...-.+++.+..||.+-..++.
T Consensus 117 ~~Ta~~laL~PL~~~~li--------~~~~~i~i~a~SG~SGAG~~~~~~ 158 (313)
T PRK11863 117 YPTGAIALLRPLVDAGLL--------PADYPVSINAVSGYSGGGKAMIAA 158 (313)
T ss_pred HHHHHHHHHHHHHHcCCc--------ccCceEEEEEccccccCCccchHH
Confidence 334444444334444432 111112356666677776664443
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.63 Score=45.20 Aligned_cols=88 Identities=19% Similarity=0.197 Sum_probs=56.7
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcE-EEEEecCChhhHHHHHHcCceecCCCcCC---HHhhc------Cc
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETI------SG 178 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~-ViVg~r~~s~s~~~A~~~G~~~~~~~~~s---~~Ea~------~~ 178 (417)
.| .+|.|+|.|.+|...++.++.. |.. |++..+ .....+.+++.|+.. +.+ ..+.+ ..
T Consensus 120 ~g-~~VlV~G~G~vG~~~~~~ak~~------G~~~Vi~~~~-~~~r~~~a~~~Ga~~----~i~~~~~~~~~~~~~~~~g 187 (280)
T TIGR03366 120 KG-RRVLVVGAGMLGLTAAAAAAAA------GAARVVAADP-SPDRRELALSFGATA----LAEPEVLAERQGGLQNGRG 187 (280)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEECC-CHHHHHHHHHcCCcE----ecCchhhHHHHHHHhCCCC
Confidence 57 8999999999999999999888 886 655443 345578888888742 111 11111 24
Q ss_pred CCEEEEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 179 ADIViLavpd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
.|+|+-++.... .++.....++++-.++..
T Consensus 188 ~d~vid~~G~~~---~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 188 VDVALEFSGATA---AVRACLESLDVGGTAVLA 217 (280)
T ss_pred CCEEEECCCChH---HHHHHHHHhcCCCEEEEe
Confidence 788888875422 333334455666555533
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.83 Score=46.18 Aligned_cols=100 Identities=16% Similarity=0.193 Sum_probs=59.4
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH-----cCceec-CCCcCCHHhh---cCcC
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----AGFTEE-NGTLGDIYET---ISGS 179 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~-----~G~~~~-~~~~~s~~Ea---~~~A 179 (417)
.. ++|.+||+|..|..-..-++...+ +-. +++.+.++...+.|++ .|+... .=...+..+. ..+-
T Consensus 123 ~p-~~VldIGcGpgpltaiilaa~~~p----~~~-~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~F 196 (296)
T PLN03075 123 VP-TKVAFVGSGPLPLTSIVLAKHHLP----TTS-FHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEY 196 (296)
T ss_pred CC-CEEEEECCCCcHHHHHHHHHhcCC----CCE-EEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCc
Confidence 44 899999999987754443333200 113 4566666655655554 222100 0001232222 3678
Q ss_pred CEEEEccC----CchHHHHHHHHHhcCCCCcEEEE--ecCc
Q 014834 180 DLVLLLIS----DAAQADNYEKIFSCMKPNSILGL--SHGF 214 (417)
Q Consensus 180 DIViLavp----d~~~~~Vl~eI~~~lk~gaiLi~--a~G~ 214 (417)
|+|++.+= .....++++.+..+|+||.++++ ++|.
T Consensus 197 DlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~ 237 (296)
T PLN03075 197 DVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGA 237 (296)
T ss_pred CEEEEecccccccccHHHHHHHHHHhcCCCcEEEEecccch
Confidence 99999851 24557899999999999998764 4553
|
|
| >PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.21 Score=51.60 Aligned_cols=84 Identities=15% Similarity=0.043 Sum_probs=51.9
Q ss_pred CEEEEEcccchHHHH-HHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCce---e-cCC-C---------c--CCHH-
Q 014834 112 NQIGVIGWGSQGPAQ-AQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT---E-ENG-T---------L--GDIY- 173 (417)
Q Consensus 112 kkIgIIG~G~mG~Ai-A~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~---~-~~~-~---------~--~s~~- 173 (417)
|||.++|.|+||+++ +.-|.++ |++|+..+.. +...+.-.+.|.- . .++ . . .+.+
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~------g~~V~~vd~~-~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~ 73 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADN------GFEVTFVDVN-QELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEA 73 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhC------CCeEEEEECC-HHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHH
Confidence 589999999999977 5556666 8887766643 3344444444631 1 011 0 1 0112
Q ss_pred --hhcCcCCEEEEccCCchHHHHHHHHHhcC
Q 014834 174 --ETISGSDLVLLLISDAAQADNYEKIFSCM 202 (417)
Q Consensus 174 --Ea~~~ADIViLavpd~~~~~Vl~eI~~~l 202 (417)
+.+.++|+|++++++.....+...|.+.|
T Consensus 74 ~~~~~~~~dlvt~~v~~~~~~s~~~~l~~~L 104 (381)
T PRK02318 74 VIEAIAEADLVTTAVGPNILPFIAPLIAKGL 104 (381)
T ss_pred HHHHhcCCCEEEeCCCcccchhHHHHHHHHH
Confidence 24458899999999887666666555444
|
|
| >COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.33 Score=49.12 Aligned_cols=85 Identities=18% Similarity=0.241 Sum_probs=56.5
Q ss_pred ccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecC----ChhhHHHH----HHcC--ceecCCCcCCHHhhc
Q 014834 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEA----RAAG--FTEENGTLGDIYETI 176 (417)
Q Consensus 108 l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~----~s~s~~~A----~~~G--~~~~~~~~~s~~Ea~ 176 (417)
|+| +||++||=| ||+.++...-..- |+++.+.... ++.-++.| .+.| +.. +.|+.|++
T Consensus 151 l~g-~k~a~vGDgNNv~nSl~~~~a~~------G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~----t~d~~eAv 219 (310)
T COG0078 151 LKG-LKLAYVGDGNNVANSLLLAAAKL------GMDVRIATPKGYEPDPEVVEKAKENAKESGGKITL----TEDPEEAV 219 (310)
T ss_pred ccC-cEEEEEcCcchHHHHHHHHHHHh------CCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEE----ecCHHHHh
Confidence 788 999999977 7888877776666 9998887543 33333444 3345 443 56899999
Q ss_pred CcCCEEEEccCCchH--HHHHHHHHhcCC
Q 014834 177 SGSDLVLLLISDAAQ--ADNYEKIFSCMK 203 (417)
Q Consensus 177 ~~ADIViLavpd~~~--~~Vl~eI~~~lk 203 (417)
++||+|..=+-...= .+..++....++
T Consensus 220 ~gADvvyTDvWvSMGee~e~~~~~~~~~~ 248 (310)
T COG0078 220 KGADVVYTDVWVSMGEEAEAEERRIAFLP 248 (310)
T ss_pred CCCCEEEecCcccCcchhhhHHHHHhhCC
Confidence 999999976654332 233444444443
|
|
| >PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.25 Score=52.55 Aligned_cols=71 Identities=25% Similarity=0.240 Sum_probs=48.3
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCh-hhHHHHHHc--CceecCCCcC-CHHhhcCcCCEEE
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAA--GFTEENGTLG-DIYETISGSDLVL 183 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s-~s~~~A~~~--G~~~~~~~~~-s~~Ea~~~ADIVi 183 (417)
+++ ++|.|||+|..|.++|+-|++. |++|.+.+.... +..+...+. |+... .. ...+.+.++|+||
T Consensus 5 ~~~-~~i~v~G~G~sG~s~a~~L~~~------G~~v~~~D~~~~~~~~~~L~~~~~~~~~~---~g~~~~~~~~~~d~vv 74 (498)
T PRK02006 5 LQG-PMVLVLGLGESGLAMARWCARH------GARLRVADTREAPPNLAALRAELPDAEFV---GGPFDPALLDGVDLVA 74 (498)
T ss_pred cCC-CEEEEEeecHhHHHHHHHHHHC------CCEEEEEcCCCCchhHHHHHhhcCCcEEE---eCCCchhHhcCCCEEE
Confidence 456 8999999999999999999999 999887664432 222223334 43321 11 2345667899999
Q ss_pred Ec--cCC
Q 014834 184 LL--ISD 188 (417)
Q Consensus 184 La--vpd 188 (417)
+. +|+
T Consensus 75 ~sp~I~~ 81 (498)
T PRK02006 75 LSPGLSP 81 (498)
T ss_pred ECCCCCC
Confidence 96 565
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.52 Score=44.91 Aligned_cols=94 Identities=20% Similarity=0.247 Sum_probs=60.0
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCC---HHhhcCcCCEEEEccC
Q 014834 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s---~~Ea~~~ADIViLavp 187 (417)
|||+||| -|..|..+++-..+. |++|+...|+.++.... .+.+..+..+.+ ..+.+..-|+||.+.-
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~R------GHeVTAivRn~~K~~~~---~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~ 71 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKR------GHEVTAIVRNASKLAAR---QGVTILQKDIFDLTSLASDLAGHDAVISAFG 71 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhC------CCeeEEEEeChHhcccc---ccceeecccccChhhhHhhhcCCceEEEecc
Confidence 6999999 589999999999999 99998777875543221 344322222333 3467888999999864
Q ss_pred Cc----h--HHHHHHHHHhcCCC-Cc-EEEEecCc
Q 014834 188 DA----A--QADNYEKIFSCMKP-NS-ILGLSHGF 214 (417)
Q Consensus 188 d~----~--~~~Vl~eI~~~lk~-ga-iLi~a~G~ 214 (417)
.. . +.+..+.+...++. +. -+.+.+|.
T Consensus 72 ~~~~~~~~~~~k~~~~li~~l~~agv~RllVVGGA 106 (211)
T COG2910 72 AGASDNDELHSKSIEALIEALKGAGVPRLLVVGGA 106 (211)
T ss_pred CCCCChhHHHHHHHHHHHHHHhhcCCeeEEEEcCc
Confidence 33 2 22233334455544 33 35666776
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.22 Score=50.76 Aligned_cols=70 Identities=11% Similarity=0.122 Sum_probs=43.9
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc--EEEEEecCCh--hhHHHHHHcCc-eecC-CCcCCHHhhcCcCCEEEE
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGS--RSFAEARAAGF-TEEN-GTLGDIYETISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s--~s~~~A~~~G~-~~~~-~~~~s~~Ea~~~ADIViL 184 (417)
.||+|||. |++|.++|..|... ++ ++.+.+.... ...+....... ...+ ....+..+++++||+||+
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~------~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVi 92 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMN------PLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVII 92 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEE
Confidence 69999999 99999999999876 55 5666655431 11121111111 1101 012345789999999999
Q ss_pred ccC
Q 014834 185 LIS 187 (417)
Q Consensus 185 avp 187 (417)
+.-
T Consensus 93 tAG 95 (323)
T PLN00106 93 PAG 95 (323)
T ss_pred eCC
Confidence 743
|
|
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.26 Score=53.27 Aligned_cols=75 Identities=19% Similarity=0.184 Sum_probs=51.8
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC--------------------hhhHHHHHHcCceec-
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG--------------------SRSFAEARAAGFTEE- 165 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~--------------------s~s~~~A~~~G~~~~- 165 (417)
.-.| ++|.|||.|..|.+.|..|++. |++|++..+.. ....+.+++.|+...
T Consensus 134 ~~~g-~~V~VIGaGpaGL~aA~~l~~~------G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~ 206 (564)
T PRK12771 134 PDTG-KRVAVIGGGPAGLSAAYHLRRM------GHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRL 206 (564)
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEe
Confidence 4567 9999999999999999999998 99988876421 123456777886431
Q ss_pred CCCc-C--CHHhhcCcCCEEEEccCC
Q 014834 166 NGTL-G--DIYETISGSDLVLLLISD 188 (417)
Q Consensus 166 ~~~~-~--s~~Ea~~~ADIViLavpd 188 (417)
+... . +.++.-...|+||+++-.
T Consensus 207 ~~~~~~~~~~~~~~~~~D~Vi~AtG~ 232 (564)
T PRK12771 207 GVRVGEDITLEQLEGEFDAVFVAIGA 232 (564)
T ss_pred CCEECCcCCHHHHHhhCCEEEEeeCC
Confidence 1111 1 233344568999998764
|
|
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.32 Score=49.57 Aligned_cols=94 Identities=10% Similarity=0.030 Sum_probs=54.6
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCC-cEEEEEecCCh-hhHHHHHHcCc------e--ecCCCcCC-HHhhcCcC
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGS-RSFAEARAAGF------T--EENGTLGD-IYETISGS 179 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G-~~ViVg~r~~s-~s~~~A~~~G~------~--~~~~~~~s-~~Ea~~~A 179 (417)
+||+|||+ |-||.-+++.|.+. . +++....+... ..........+ . ..+-.+.+ ..+...++
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~------~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKH------PYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDV 74 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccC
Confidence 48999995 99999999988765 4 46543323221 11111111111 0 00000111 22345789
Q ss_pred CEEEEccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 180 DIViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
|+|++++|.....++.+.+.. .|..+++.+|-
T Consensus 75 DvVf~a~p~~~s~~~~~~~~~---~G~~VIDlsg~ 106 (341)
T TIGR00978 75 DIVFSALPSEVAEEVEPKLAE---AGKPVFSNASN 106 (341)
T ss_pred CEEEEeCCHHHHHHHHHHHHH---CCCEEEECChh
Confidence 999999999988887765533 57777777664
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.42 Score=46.56 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=30.7
Q ss_pred hhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEe
Q 014834 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~ 147 (417)
++.|+. +||.|||+|..|..++++|... |+ ++.+.+
T Consensus 27 Q~~L~~-~~VliiG~GglGs~va~~La~~------Gvg~i~lvD 63 (245)
T PRK05690 27 QEKLKA-ARVLVVGLGGLGCAASQYLAAA------GVGTLTLVD 63 (245)
T ss_pred HHHhcC-CeEEEECCCHHHHHHHHHHHHc------CCCEEEEEc
Confidence 578888 9999999999999999999998 76 444443
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=92.96 E-value=0.66 Score=45.88 Aligned_cols=87 Identities=9% Similarity=0.001 Sum_probs=55.7
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCC
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd 188 (417)
+| +++.|+|.|.+|...++-++.. |.++++..+......+.+.+.++.. ..++.-...|+||=++..
T Consensus 144 ~~-~~vlV~G~G~vG~~a~q~ak~~------G~~~v~~~~~~~~rl~~a~~~~~i~------~~~~~~~g~Dvvid~~G~ 210 (308)
T TIGR01202 144 KV-LPDLIVGHGTLGRLLARLTKAA------GGSPPAVWETNPRRRDGATGYEVLD------PEKDPRRDYRAIYDASGD 210 (308)
T ss_pred CC-CcEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCHHHHHhhhhccccC------hhhccCCCCCEEEECCCC
Confidence 56 7899999999999999988888 8875555444444455565544321 111122458999999886
Q ss_pred chHHHHHHHHHhcCCCCcEEEEe
Q 014834 189 AAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 189 ~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
.. .++...+.++++-.+++.
T Consensus 211 ~~---~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 211 PS---LIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred HH---HHHHHHHhhhcCcEEEEE
Confidence 43 234444556666655543
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.72 Score=47.41 Aligned_cols=87 Identities=11% Similarity=0.120 Sum_probs=54.2
Q ss_pred hhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCC-------------------hhhHHHHH---Hc-
Q 014834 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEAR---AA- 160 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~-------------------s~s~~~A~---~~- 160 (417)
++.|+. .+|.|||+|-.|..++++|... |+ ++.+.++.. .+....++ +.
T Consensus 23 q~~L~~-~~VlivG~GGlGs~~a~~La~~------Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~n 95 (355)
T PRK05597 23 QQSLFD-AKVAVIGAGGLGSPALLYLAGA------GVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALN 95 (355)
T ss_pred HHHHhC-CeEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHC
Confidence 577888 9999999999999999999988 77 454444321 01111111 11
Q ss_pred -Ccee--cCCCc--CCHHhhcCcCCEEEEccCCchHHHHHHHH
Q 014834 161 -GFTE--ENGTL--GDIYETISGSDLVLLLISDAAQADNYEKI 198 (417)
Q Consensus 161 -G~~~--~~~~~--~s~~Ea~~~ADIViLavpd~~~~~Vl~eI 198 (417)
.+.. ..... .+..+.++++|+||.++-+.....++.+.
T Consensus 96 p~v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~ 138 (355)
T PRK05597 96 PDVKVTVSVRRLTWSNALDELRDADVILDGSDNFDTRHLASWA 138 (355)
T ss_pred CCcEEEEEEeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHH
Confidence 1111 01111 12356789999999998766555566554
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.85 E-value=0.62 Score=44.97 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=30.8
Q ss_pred hhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEe
Q 014834 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~ 147 (417)
++.|++ .+|.|||+|-.|..++.+|... |+ ++.+.+
T Consensus 22 q~~L~~-~~VlIiG~GGlGs~ia~~La~~------Gvg~i~lvD 58 (231)
T PRK08328 22 QEKLKK-AKVAVVGVGGLGSPVAYYLAAA------GVGRILLID 58 (231)
T ss_pred HHHHhC-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEc
Confidence 678888 9999999999999999999998 77 455544
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.34 Score=49.30 Aligned_cols=91 Identities=14% Similarity=0.129 Sum_probs=55.3
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCc---EEEEEecCChhhHHHHHHcCceecCCCcCCHH-hhcCcCCEEEEc
Q 014834 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGSRSFAEARAAGFTEENGTLGDIY-ETISGSDLVLLL 185 (417)
Q Consensus 111 mkkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~---~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~-Ea~~~ADIViLa 185 (417)
++||+||| .|..|..+.+-|.+. ++ ++....+..+...... -.|... .+.+.. +.++++|+||++
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~------~hp~~~l~~l~s~~~~g~~l~-~~g~~i---~v~d~~~~~~~~vDvVf~A 70 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEER------NFPVDKLRLLASARSAGKELS-FKGKEL---KVEDLTTFDFSGVDIALFS 70 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC------CCCcceEEEEEccccCCCeee-eCCcee---EEeeCCHHHHcCCCEEEEC
Confidence 37999999 589999999999886 65 3333333211111110 012111 012221 234789999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 186 vpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
+|.....++.+++. +.|..|++.++.
T Consensus 71 ~g~g~s~~~~~~~~---~~G~~VIDlS~~ 96 (334)
T PRK14874 71 AGGSVSKKYAPKAA---AAGAVVIDNSSA 96 (334)
T ss_pred CChHHHHHHHHHHH---hCCCEEEECCch
Confidence 99887777776653 357777776653
|
|
| >TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.72 Score=47.95 Aligned_cols=168 Identities=15% Similarity=0.181 Sum_probs=87.4
Q ss_pred CEEEEEcc-cchHHHHHHHHH-hhhhhhcCCcE---EEEEecCChhhHHHHHHcCceecCCCcCCH-H-hhcCcCCEEEE
Q 014834 112 NQIGVIGW-GSQGPAQAQNLR-DSLAEAKSDIV---VKVGLRKGSRSFAEARAAGFTEENGTLGDI-Y-ETISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr-~s~~~~~~G~~---ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~-~-Ea~~~ADIViL 184 (417)
++|||||+ |..|..+.+.|. +. .+. +..... +++.... ..+......+.+. + +..++.|++|.
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~------~fp~~~~~~~ss--~~s~g~~--~~f~~~~~~v~~~~~~~~~~~vDivff 70 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEER------DFDAIRPVFFST--SQLGQAA--PSFGGTTGTLQDAFDIDALKALDIIIT 70 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCC------CCccccEEEEEc--hhhCCCc--CCCCCCcceEEcCcccccccCCCEEEE
Confidence 58999997 999999999888 55 443 222211 1111111 1111000012222 2 35788999999
Q ss_pred ccCCchHHHHHHHHHhcCCCC--cEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEE
Q 014834 185 LISDAAQADNYEKIFSCMKPN--SILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSS 262 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~g--aiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~l 262 (417)
+.+.....++..... +.| .+|++.++. + ...+|++. |-|---...+..... .|+..
T Consensus 71 a~g~~~s~~~~p~~~---~aG~~~~VIDnSSa---~------Rmd~dVPL--VVPeVN~~~i~~~~~-------~gi~~- 128 (366)
T TIGR01745 71 CQGGDYTNEIYPKLR---ESGWQGYWIDAASS---L------RMKDDAVI--ILDPVNQDVITDGLN-------NGIRT- 128 (366)
T ss_pred cCCHHHHHHHHHHHH---hCCCCeEEEECChh---h------hcCCCCCE--EeCCcCHHHHHhHHh-------CCcCe-
Confidence 998876666665544 367 678887765 1 22234444 345333333332111 24533
Q ss_pred EeecCCCCHHHHHHHH-HHHHHhCCCceeccchhhhhhhhccccchhhhchHHHHHHHHHHHH
Q 014834 263 FAVHQDVDGRATNVAL-GWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESLFRRF 324 (417)
Q Consensus 263 iav~~dvsgea~e~a~-~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA~iea~~d~~ 324 (417)
++ +.+.+--.+-.++ .|....|-.+++-|| | =.+||++..-++-+.+..
T Consensus 129 ia-nPNCst~~l~~aL~pL~~~~~i~~v~VsT---------y---QAvSGAG~~g~~eL~~Qt 178 (366)
T TIGR01745 129 FV-GGNCTVSLMLMSLGGLFANDLVEWVSVAT---------Y---QAASGGGARHMRELLTQM 178 (366)
T ss_pred EE-CcCHHHHHHHHHHHHHHhccCccEEEEEe---------c---hhhhhcCHHHHHHHHHHH
Confidence 22 3444444443333 344445555555554 2 136787766555555444
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.78 E-value=1.2 Score=44.61 Aligned_cols=92 Identities=14% Similarity=0.141 Sum_probs=59.6
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcCceec-CCCcCCHHhhcC---cCCEEE
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS---GSDLVL 183 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G~~~~-~~~~~s~~Ea~~---~ADIVi 183 (417)
+| ++|.|+|.|.+|...++-++.. |. +|++..+. ....+.+++.|.... +..-.+..+..+ ..|+||
T Consensus 169 ~g-~~VlV~G~G~vG~~aiqlak~~------G~~~Vi~~~~~-~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vi 240 (343)
T PRK09880 169 QG-KRVFVSGVGPIGCLIVAAVKTL------GAAEIVCADVS-PRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSF 240 (343)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCcEEEEEeCC-HHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEE
Confidence 57 8999999999999999988888 88 46555555 445788888886421 100112333322 379999
Q ss_pred EccCCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 184 Lavpd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
-++.... .++.....++++-.++..
T Consensus 241 d~~G~~~---~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 241 EVSGHPS---SINTCLEVTRAKGVMVQV 265 (343)
T ss_pred ECCCCHH---HHHHHHHHhhcCCEEEEE
Confidence 9887532 333444556676665544
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=92.78 E-value=0.34 Score=49.75 Aligned_cols=88 Identities=15% Similarity=0.220 Sum_probs=55.0
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCc---EEE-EE-ecCChhhHHHHHHcCceecCCCcCC-HHhhcCcCCEEEE
Q 014834 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVK-VG-LRKGSRSFAEARAAGFTEENGTLGD-IYETISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~---~Vi-Vg-~r~~s~s~~~A~~~G~~~~~~~~~s-~~Ea~~~ADIViL 184 (417)
.||+||| .|..|..+.+-|.++ ++ ++. +. .+...+.... .|... .+.+ ..+.+.++|+||+
T Consensus 8 ~kVaVvGAtG~vG~eLlrlL~~~------~hP~~~l~~las~rsaGk~~~~---~~~~~---~v~~~~~~~~~~~D~vf~ 75 (344)
T PLN02383 8 PSVAIVGVTGAVGQEFLSVLTDR------DFPYSSLKMLASARSAGKKVTF---EGRDY---TVEELTEDSFDGVDIALF 75 (344)
T ss_pred CeEEEEcCCChHHHHHHHHHHhC------CCCcceEEEEEccCCCCCeeee---cCcee---EEEeCCHHHHcCCCEEEE
Confidence 6899999 578899999888876 55 332 22 2222222211 12111 0111 1244588999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
++|.....++.+++. +.|..|++.+|.
T Consensus 76 a~p~~~s~~~~~~~~---~~g~~VIDlS~~ 102 (344)
T PLN02383 76 SAGGSISKKFGPIAV---DKGAVVVDNSSA 102 (344)
T ss_pred CCCcHHHHHHHHHHH---hCCCEEEECCch
Confidence 999987777776653 358888888764
|
|
| >PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.4 Score=48.45 Aligned_cols=80 Identities=11% Similarity=0.126 Sum_probs=55.2
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| |+|.|||-+ ..|.+++.-|.+.. +..+..|.+.... +.++++.+++||+||.
T Consensus 157 i~l~G-k~vvViGrS~iVGkPla~lL~~~~--~~~~atVtv~hs~-------------------T~~l~~~~~~ADIvVs 214 (297)
T PRK14168 157 VETSG-AEVVVVGRSNIVGKPIANMMTQKG--PGANATVTIVHTR-------------------SKNLARHCQRADILIV 214 (297)
T ss_pred CCCCC-CEEEEECCCCcccHHHHHHHHhcc--cCCCCEEEEecCC-------------------CcCHHHHHhhCCEEEE
Confidence 46889 999999976 78999999998650 0002356554321 1357788999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
++.-... +. ..++|+|++|++++
T Consensus 215 AvGkp~~---i~--~~~ik~gavVIDvG 237 (297)
T PRK14168 215 AAGVPNL---VK--PEWIKPGATVIDVG 237 (297)
T ss_pred ecCCcCc---cC--HHHcCCCCEEEecC
Confidence 9864332 22 34578999888753
|
|
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.61 Score=48.77 Aligned_cols=91 Identities=12% Similarity=0.033 Sum_probs=55.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHH----hhcCcCCEEEEccC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY----ETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~----Ea~~~ADIViLavp 187 (417)
..|-|+|+|.+|..+++.|++. |.++++.+.+ + .+...+.|.....|...+.+ .-+++|+.|+++++
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~------g~~vvVId~d--~-~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~ 311 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQR------GQAVTVIVPL--G-LEHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRD 311 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHC------CCCEEEEECc--h-hhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCC
Confidence 5799999999999999999988 8877666543 1 23333344322222223322 13679999999998
Q ss_pred CchHHHHHHHHHhcCCCC-cEEEEe
Q 014834 188 DAAQADNYEKIFSCMKPN-SILGLS 211 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~g-aiLi~a 211 (417)
+....-..-.....+.|+ +++..+
T Consensus 312 dD~~Nl~ivL~ar~l~p~~kIIa~v 336 (393)
T PRK10537 312 NDADNAFVVLAAKEMSSDVKTVAAV 336 (393)
T ss_pred ChHHHHHHHHHHHHhCCCCcEEEEE
Confidence 876543222222334443 455433
|
|
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.7 Score=47.59 Aligned_cols=95 Identities=13% Similarity=0.147 Sum_probs=51.7
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH----cCceecCCCcCCHHhh-cCcCCEEEE
Q 014834 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYET-ISGSDLVLL 184 (417)
Q Consensus 111 mkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~----~G~~~~~~~~~s~~Ea-~~~ADIViL 184 (417)
|.||+|||. |--|.-+.+-|... ..+++.+...+..+-...... .|.....-...+.+++ ..+||+|||
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~H-----p~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFl 76 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGH-----PDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFL 76 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcC-----CCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEE
Confidence 589999995 66666666665543 133544332221111111111 1221000011234443 455899999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~G 213 (417)
|+|+..-.++..++.. .|..|++.++
T Consensus 77 alPhg~s~~~v~~l~~---~g~~VIDLSa 102 (349)
T COG0002 77 ALPHGVSAELVPELLE---AGCKVIDLSA 102 (349)
T ss_pred ecCchhHHHHHHHHHh---CCCeEEECCc
Confidence 9999998888877643 4555887776
|
|
| >PLN02527 aspartate carbamoyltransferase | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.73 Score=46.60 Aligned_cols=71 Identities=15% Similarity=0.107 Sum_probs=49.1
Q ss_pred hccCCCEEEEEccc---chHHHHHHHHHhhhhhhcCCcEEEEEecCC----hhhHHHHHHcCceecCCCcCCHHhhcCcC
Q 014834 107 AFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISGS 179 (417)
Q Consensus 107 ~l~gmkkIgIIG~G---~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~----s~s~~~A~~~G~~~~~~~~~s~~Ea~~~A 179 (417)
.++| .||++||-+ ++..+++..+... .|+++.+...+. ....+.+++.|... ..+.++++++++|
T Consensus 148 ~l~g-~kva~vGD~~~~rv~~Sl~~~~~~~-----~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~--~~~~d~~~a~~~a 219 (306)
T PLN02527 148 RLDG-IKVGLVGDLANGRTVRSLAYLLAKY-----EDVKIYFVAPDVVKMKDDIKDYLTSKGVEW--EESSDLMEVASKC 219 (306)
T ss_pred CcCC-CEEEEECCCCCChhHHHHHHHHHhc-----CCCEEEEECCCccCCCHHHHHHHHHcCCEE--EEEcCHHHHhCCC
Confidence 3788 899999976 5889998887653 167777665432 23344555556432 1146899999999
Q ss_pred CEEEEc
Q 014834 180 DLVLLL 185 (417)
Q Consensus 180 DIViLa 185 (417)
|+|...
T Consensus 220 Dvvyt~ 225 (306)
T PLN02527 220 DVLYQT 225 (306)
T ss_pred CEEEEC
Confidence 999984
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=92.67 E-value=0.85 Score=45.59 Aligned_cols=88 Identities=18% Similarity=0.222 Sum_probs=60.1
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCH-HhhcCcCCEEEEccC
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI-YETISGSDLVLLLIS 187 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~-~Ea~~~ADIViLavp 187 (417)
.| .+|.|+|.|.+|...++.++.. |.+|++..+.+ ...+.+++.|+.. +.+. ++.-+..|+++.++.
T Consensus 165 ~g-~~VlV~G~g~iG~~a~~~a~~~------G~~vi~~~~~~-~~~~~a~~~Ga~~----vi~~~~~~~~~~d~~i~~~~ 232 (329)
T TIGR02822 165 PG-GRLGLYGFGGSAHLTAQVALAQ------GATVHVMTRGA-AARRLALALGAAS----AGGAYDTPPEPLDAAILFAP 232 (329)
T ss_pred CC-CEEEEEcCCHHHHHHHHHHHHC------CCeEEEEeCCh-HHHHHHHHhCCce----eccccccCcccceEEEECCC
Confidence 46 8999999999999988888877 88876665554 4578899999753 2221 111235688887765
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEe
Q 014834 188 DAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
.. +.+....+.++++-.++..
T Consensus 233 ~~---~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 233 AG---GLVPPALEALDRGGVLAVA 253 (329)
T ss_pred cH---HHHHHHHHhhCCCcEEEEE
Confidence 43 3566666677777766543
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >PRK14804 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.67 E-value=0.44 Score=48.30 Aligned_cols=69 Identities=14% Similarity=0.100 Sum_probs=50.0
Q ss_pred hccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChh--h----HHHHHHcC-ceecCCCcCCHHhhcCc
Q 014834 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR--S----FAEARAAG-FTEENGTLGDIYETISG 178 (417)
Q Consensus 107 ~l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~--s----~~~A~~~G-~~~~~~~~~s~~Ea~~~ 178 (417)
.++| +||++||- +++..+++..+... |++|.+...+.-. . .+.+++.| +.. ..++++++++
T Consensus 150 ~l~g-~~va~vGd~~rv~~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~----~~d~~~av~~ 218 (311)
T PRK14804 150 PLNQ-KQLTYIGVHNNVVNSLIGITAAL------GIHLTLVTPIAAKENIHAQTVERAKKKGTLSW----EMNLHKAVSH 218 (311)
T ss_pred CCCC-CEEEEECCCCcHHHHHHHHHHHc------CCEEEEECCCCccHHHHHHHHHHHHhcCCeEE----EeCHHHHhCC
Confidence 4788 99999997 69999999998887 9988776554311 1 12333444 332 4689999999
Q ss_pred CCEEEEcc
Q 014834 179 SDLVLLLI 186 (417)
Q Consensus 179 ADIViLav 186 (417)
+|+|..-+
T Consensus 219 aDvvy~d~ 226 (311)
T PRK14804 219 ADYVYTDT 226 (311)
T ss_pred CCEEEeee
Confidence 99999853
|
|
| >PRK00779 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.65 Score=46.88 Aligned_cols=70 Identities=19% Similarity=0.193 Sum_probs=50.2
Q ss_pred hccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCh----hhHH-HHHHcCceecCCCcCCHHhhcCcCC
Q 014834 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFA-EARAAGFTEENGTLGDIYETISGSD 180 (417)
Q Consensus 107 ~l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s----~s~~-~A~~~G~~~~~~~~~s~~Ea~~~AD 180 (417)
.++| .||++||- ++...+++..+..- |.+|.+.....- ...+ .+++.|.... ...+++++++++|
T Consensus 149 ~l~g-l~i~~vGd~~~v~~Sl~~~l~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~~~aD 219 (304)
T PRK00779 149 SLKG-LKVAWVGDGNNVANSLLLAAALL------GFDLRVATPKGYEPDPEIVEKIAKETGASIE--VTHDPKEAVKGAD 219 (304)
T ss_pred CcCC-cEEEEEeCCCccHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHcCCeEE--EEcCHHHHhCCCC
Confidence 4778 89999997 78999999998887 998876654321 1112 1555674320 1468999999999
Q ss_pred EEEEc
Q 014834 181 LVLLL 185 (417)
Q Consensus 181 IViLa 185 (417)
+|...
T Consensus 220 vvy~~ 224 (304)
T PRK00779 220 VVYTD 224 (304)
T ss_pred EEEec
Confidence 99985
|
|
| >PRK04284 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.56 E-value=0.37 Score=49.29 Aligned_cols=70 Identities=19% Similarity=0.144 Sum_probs=49.3
Q ss_pred hccCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecCC----hhhHH----HHHHcCceecCCCcCCHHhhc
Q 014834 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYETI 176 (417)
Q Consensus 107 ~l~gmkkIgIIG~G--~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~----s~s~~----~A~~~G~~~~~~~~~s~~Ea~ 176 (417)
.++| +||++||-+ ++..+++..+... |.+|.+...+. +...+ .+++.|... ....++++++
T Consensus 152 ~l~g-~kia~vGD~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~--~~~~d~~ea~ 222 (332)
T PRK04284 152 PYKD-IKFTYVGDGRNNVANALMQGAAIM------GMDFHLVCPKELNPDDELLNKCKEIAAETGGKI--TITDDIDEGV 222 (332)
T ss_pred CcCC-cEEEEecCCCcchHHHHHHHHHHc------CCEEEEECCccccCCHHHHHHHHHHHHHcCCeE--EEEcCHHHHh
Confidence 3678 899999985 8888999888877 99887765431 12222 233456321 0157899999
Q ss_pred CcCCEEEEc
Q 014834 177 SGSDLVLLL 185 (417)
Q Consensus 177 ~~ADIViLa 185 (417)
++||+|...
T Consensus 223 ~~aDvvy~~ 231 (332)
T PRK04284 223 KGSDVIYTD 231 (332)
T ss_pred CCCCEEEEC
Confidence 999999985
|
|
| >PRK11891 aspartate carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.84 Score=48.39 Aligned_cols=71 Identities=14% Similarity=0.112 Sum_probs=49.4
Q ss_pred ccCCCEEEEEccc---chHHHHHHHHHhhhhhhcCCcEEEEEecCC----hhhHHHHHHcCceecCCCcCCHHhhcCcCC
Q 014834 108 FNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISGSD 180 (417)
Q Consensus 108 l~gmkkIgIIG~G---~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~----s~s~~~A~~~G~~~~~~~~~s~~Ea~~~AD 180 (417)
++| +||++||-+ ++..+++..+...+ |++|.+..... +...+.+.+.|.... .+.+++|++++||
T Consensus 239 l~G-~kIa~vGD~~~~rv~~Sl~~~la~~~-----G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~--~~~d~~eav~~AD 310 (429)
T PRK11891 239 VDG-AHIALVGDLKYGRTVHSLVKLLALYR-----GLKFTLVSPPTLEMPAYIVEQISRNGHVIE--QTDDLAAGLRGAD 310 (429)
T ss_pred cCC-CEEEEECcCCCChHHHHHHHHHHHhc-----CCEEEEECCCccccCHHHHHHHHhcCCeEE--EEcCHHHHhCCCC
Confidence 778 999999984 89999998876521 78877664432 222345555564321 1578999999999
Q ss_pred EEEEcc
Q 014834 181 LVLLLI 186 (417)
Q Consensus 181 IViLav 186 (417)
+|....
T Consensus 311 VVYt~~ 316 (429)
T PRK11891 311 VVYATR 316 (429)
T ss_pred EEEEcC
Confidence 999844
|
|
| >PRK12562 ornithine carbamoyltransferase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=92.36 E-value=0.5 Score=48.44 Aligned_cols=71 Identities=17% Similarity=0.164 Sum_probs=49.4
Q ss_pred hccCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecCC----hhhHH----HHHHcCceecCCCcCCHHhhc
Q 014834 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYETI 176 (417)
Q Consensus 107 ~l~gmkkIgIIG~G--~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~----s~s~~----~A~~~G~~~~~~~~~s~~Ea~ 176 (417)
.++| .||++||-+ ++..+++..+..- |++|.+..... ....+ .+++.|.... ...++++++
T Consensus 153 ~l~g-l~va~vGD~~~~v~~S~~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~ 223 (334)
T PRK12562 153 AFNE-MTLVYAGDARNNMGNSMLEAAALT------GLDLRLVAPQACWPEASLVAECSALAQKHGGKIT--LTEDIAAGV 223 (334)
T ss_pred CcCC-cEEEEECCCCCCHHHHHHHHHHHc------CCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 3678 899999986 7899999988877 99887664432 11122 2344453210 147899999
Q ss_pred CcCCEEEEcc
Q 014834 177 SGSDLVLLLI 186 (417)
Q Consensus 177 ~~ADIViLav 186 (417)
+++|+|....
T Consensus 224 ~~aDvvyt~~ 233 (334)
T PRK12562 224 KGADFIYTDV 233 (334)
T ss_pred CCCCEEEEcC
Confidence 9999999864
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=92.35 E-value=0.63 Score=48.40 Aligned_cols=88 Identities=19% Similarity=0.257 Sum_probs=62.5
Q ss_pred hccCCCEEEEEcc----------cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhc
Q 014834 107 AFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI 176 (417)
Q Consensus 107 ~l~gmkkIgIIG~----------G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~ 176 (417)
.++| ++|+|+|+ -+-...+++.|.+. |.+|.+++..-... .. ...+. +.+.+|++
T Consensus 310 ~~~~-~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~------g~~v~~~DP~~~~~-~~-~~~~~------~~~~~~~~ 374 (411)
T TIGR03026 310 PLKG-KTVLILGLAFKPNTDDVRESPALDIIELLKEK------GAKVKAYDPLVPEE-EV-KGLPL------IDDLEEAL 374 (411)
T ss_pred cccC-CEEEEEeeEecCCCCccccChHHHHHHHHHhC------CCEEEEECCCCChh-hh-hhccc------CCCHHHHH
Confidence 3688 99999998 55777888888888 99998876542221 11 11221 35788999
Q ss_pred CcCCEEEEccCCchHHH-HHHHHHhcCCCCcEEEE
Q 014834 177 SGSDLVLLLISDAAQAD-NYEKIFSCMKPNSILGL 210 (417)
Q Consensus 177 ~~ADIViLavpd~~~~~-Vl~eI~~~lk~gaiLi~ 210 (417)
++||+|++++.-....+ -++.+...|++ .+|++
T Consensus 375 ~~ad~~v~~t~~~~~~~~~~~~~~~~~~~-~~v~D 408 (411)
T TIGR03026 375 KGADALVILTDHDEFKDLDLEKIKDLMKG-KVVVD 408 (411)
T ss_pred hCCCEEEEecCCHHHhccCHHHHHHhcCC-CEEEe
Confidence 99999999999887765 35667766654 35554
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=92.29 E-value=0.48 Score=48.41 Aligned_cols=93 Identities=14% Similarity=0.118 Sum_probs=53.6
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHH-HHHHcCcee--------cCCCc--CCHHhhcCcC
Q 014834 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-EARAAGFTE--------ENGTL--GDIYETISGS 179 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~-~A~~~G~~~--------~~~~~--~s~~Ea~~~A 179 (417)
.||+|+| .|.+|..+++.|.+. ..+++....+..+..-+ .....++.. .+-.+ .+. +.+.++
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~-----p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~ 77 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANH-----PWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDP-EAVDDV 77 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcC-----CCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCH-HHhcCC
Confidence 7999998 899999999998865 12355433233211100 100011100 00001 233 345789
Q ss_pred CEEEEccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 014834 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 180 DIViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~G 213 (417)
|+|++++|.....++.+.+.. .|..+++.+|
T Consensus 78 DvVf~a~p~~~s~~~~~~~~~---~G~~vIDls~ 108 (349)
T PRK08664 78 DIVFSALPSDVAGEVEEEFAK---AGKPVFSNAS 108 (349)
T ss_pred CEEEEeCChhHHHHHHHHHHH---CCCEEEECCc
Confidence 999999999877776655433 4666776666
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=92.29 E-value=1.1 Score=45.01 Aligned_cols=28 Identities=14% Similarity=0.318 Sum_probs=26.5
Q ss_pred hhhccCCCEEEEEcccchHHHHHHHHHhh
Q 014834 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s 133 (417)
++.|+. .+|.|||+|-.|..++.+|..+
T Consensus 22 Q~kL~~-s~VlIvG~GGLGs~va~~LA~a 49 (287)
T PRK08223 22 QQRLRN-SRVAIAGLGGVGGIHLLTLARL 49 (287)
T ss_pred HHHHhc-CCEEEECCCHHHHHHHHHHHHh
Confidence 688888 9999999999999999999998
|
|
| >PRK02255 putrescine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.28 E-value=0.87 Score=46.77 Aligned_cols=70 Identities=14% Similarity=0.043 Sum_probs=48.1
Q ss_pred hccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC----hhhHHHH----HHcCceecCCCcCCHHhhcC
Q 014834 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEA----RAAGFTEENGTLGDIYETIS 177 (417)
Q Consensus 107 ~l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~----s~s~~~A----~~~G~~~~~~~~~s~~Ea~~ 177 (417)
.++| .||++||- .++..+++..+..- |++|.+..... ..-.+.+ ...|.... ...+++|+++
T Consensus 151 ~l~g-lkv~~vGD~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~eav~ 221 (338)
T PRK02255 151 KLED-CKVVFVGDATQVCVSLMFIATKM------GMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVL--VTDDVDEAVK 221 (338)
T ss_pred CCCC-CEEEEECCCchHHHHHHHHHHhC------CCEEEEECCCccccCHHHHHHHHHHHHhcCCeEE--EEcCHHHHhC
Confidence 4778 89999997 47888888888776 99887765431 1222222 33453210 1578999999
Q ss_pred cCCEEEEc
Q 014834 178 GSDLVLLL 185 (417)
Q Consensus 178 ~ADIViLa 185 (417)
++|+|..-
T Consensus 222 ~aDvvy~~ 229 (338)
T PRK02255 222 DADFVYTD 229 (338)
T ss_pred CCCEEEEc
Confidence 99999984
|
|
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=92.19 E-value=1.6 Score=45.42 Aligned_cols=169 Identities=15% Similarity=0.200 Sum_probs=88.2
Q ss_pred CCEEEEEcc-cchHHHHHH-HHHhhhhhhcCCcE---EEEEecCChhhHHHHHHcCceecCCCcCC--HHhhcCcCCEEE
Q 014834 111 INQIGVIGW-GSQGPAQAQ-NLRDSLAEAKSDIV---VKVGLRKGSRSFAEARAAGFTEENGTLGD--IYETISGSDLVL 183 (417)
Q Consensus 111 mkkIgIIG~-G~mG~AiA~-~Lr~s~~~~~~G~~---ViVg~r~~s~s~~~A~~~G~~~~~~~~~s--~~Ea~~~ADIVi 183 (417)
|.+|||||+ |..|.-+.+ -|.+. .+. +.. ..+ +++-..-. .+......+.+ ..+.++++|++|
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~------~f~~~~l~~-~ss-~~sg~~~~--~f~g~~~~v~~~~~~~~~~~~Divf 70 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEEN------DFDLIEPVF-FST-SQAGGAAP--SFGGKEGTLQDAFDIDALKKLDIII 70 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCC------CCCcCcEEE-ecc-hhhCCccc--ccCCCcceEEecCChhHhcCCCEEE
Confidence 579999997 999999997 55555 553 443 222 11111111 11100001111 123457899999
Q ss_pred EccCCchHHHHHHHHHhcCCCC--cEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceE
Q 014834 184 LLISDAAQADNYEKIFSCMKPN--SILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINS 261 (417)
Q Consensus 184 Lavpd~~~~~Vl~eI~~~lk~g--aiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~ 261 (417)
+++|.....++.+++.. .| .+|++.+|. + ...+ ++..+-|---...++..-. .|+..
T Consensus 71 ~a~~~~~s~~~~~~~~~---aG~~~~VID~Ss~---f------R~~~--dvplvvPEvN~e~i~~~~~-------~g~~i 129 (369)
T PRK06598 71 TCQGGDYTNEVYPKLRA---AGWQGYWIDAAST---L------RMKD--DAIIILDPVNRDVIDDALA-------NGVKT 129 (369)
T ss_pred ECCCHHHHHHHHHHHHh---CCCCeEEEECChH---H------hCCC--CCcEEcCCcCHHHHHhhhh-------cCCCE
Confidence 99998877777776543 57 567877764 1 1122 4555566544433332111 23333
Q ss_pred EEeecCCCCHHHHHHHHHHHHHhCCC-ceeccchhhhhhhhccccchhhhchHHHHHHHHHHHH
Q 014834 262 SFAVHQDVDGRATNVALGWSVALGSP-FTFATTLEQEYKSDIFGERGILLGAVHGIVESLFRRF 324 (417)
Q Consensus 262 liav~~dvsgea~e~a~~L~~alG~~-~~iettf~~e~~~dl~ge~t~L~G~~pA~iea~~d~~ 324 (417)
|+ +.+.+--+.-+++.=+...|.. +++-+ .-..+||++-.-++-+.+..
T Consensus 130 -Ia-nPnC~tt~~~laL~PL~~~~~i~~viVs------------t~qavSGAG~~g~~eL~~qt 179 (369)
T PRK06598 130 -FV-GGNCTVSLMLMALGGLFKNDLVEWVSVM------------TYQAASGAGARNMRELLTQM 179 (369)
T ss_pred -EE-cCChHHHHHHHHHHHHHhcCCceEEEEE------------eeecccccCHHHHHHHHHHH
Confidence 33 4444545555555445555543 22222 22457887776555544443
|
|
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.28 Score=50.14 Aligned_cols=58 Identities=22% Similarity=0.318 Sum_probs=48.1
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHh
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE 174 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~E 174 (417)
+--+| .+++|+|+|..|.+.+++.|.. |..-+|+.+.++...++|++.|++. +-++.|
T Consensus 189 kv~~G-stvAVfGLG~VGLav~~Gaka~------GAsrIIgvDiN~~Kf~~ak~fGaTe----~iNp~d 246 (375)
T KOG0022|consen 189 KVEPG-STVAVFGLGGVGLAVAMGAKAA------GASRIIGVDINPDKFEKAKEFGATE----FINPKD 246 (375)
T ss_pred ccCCC-CEEEEEecchHHHHHHHhHHhc------CcccEEEEecCHHHHHHHHhcCcce----ecChhh
Confidence 33467 8999999999999999999998 8866778888888899999999985 555543
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=92.17 E-value=1 Score=46.65 Aligned_cols=88 Identities=17% Similarity=0.152 Sum_probs=56.4
Q ss_pred hhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCC-------------------hhhHH---HHHHc-
Q 014834 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFA---EARAA- 160 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~-------------------s~s~~---~A~~~- 160 (417)
++.|+. .+|.|||+|-.|..++.+|... |+ ++.+.++.. .+... ...+.
T Consensus 36 q~~l~~-~~VliiG~GglG~~v~~~La~~------Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~n 108 (370)
T PRK05600 36 QERLHN-ARVLVIGAGGLGCPAMQSLASA------GVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQ 108 (370)
T ss_pred HHHhcC-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHC
Confidence 678888 9999999999999999999998 76 555554320 01111 11111
Q ss_pred -Cc--eecCCCc--CCHHhhcCcCCEEEEccCCchHHHHHHHHH
Q 014834 161 -GF--TEENGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (417)
Q Consensus 161 -G~--~~~~~~~--~s~~Ea~~~ADIViLavpd~~~~~Vl~eI~ 199 (417)
.+ ......+ .+..+.++++|+||-|+-.......+.++.
T Consensus 109 p~v~i~~~~~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~ 152 (370)
T PRK05600 109 PDIRVNALRERLTAENAVELLNGVDLVLDGSDSFATKFLVADAA 152 (370)
T ss_pred CCCeeEEeeeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 11 1111111 134568899999999988777666776654
|
|
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=92.13 E-value=1.1 Score=45.42 Aligned_cols=91 Identities=18% Similarity=0.179 Sum_probs=57.5
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec-CCC-cCCHHhhcCcCCEEEEcc
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGT-LGDIYETISGSDLVLLLI 186 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~-~~~-~~s~~Ea~~~ADIViLav 186 (417)
.| ++|.|+|.|.+|...++.++.. |.+|++......+..+.+++.|+... +.. .....+.....|+||-++
T Consensus 183 ~g-~~VlV~G~G~vG~~avq~Ak~~------Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~ 255 (360)
T PLN02586 183 PG-KHLGVAGLGGLGHVAVKIGKAF------GLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTV 255 (360)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECC
Confidence 57 8999999999999999998888 88876655554454556667886320 000 001223333579999887
Q ss_pred CCchHHHHHHHHHhcCCCCcEEE
Q 014834 187 SDAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiLi 209 (417)
.... .+++....++++-.++
T Consensus 256 g~~~---~~~~~~~~l~~~G~iv 275 (360)
T PLN02586 256 SAVH---ALGPLLGLLKVNGKLI 275 (360)
T ss_pred CCHH---HHHHHHHHhcCCcEEE
Confidence 6422 3334445566666554
|
|
| >PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway | Back alignment and domain information |
|---|
Probab=92.12 E-value=1.1 Score=37.93 Aligned_cols=82 Identities=26% Similarity=0.305 Sum_probs=48.1
Q ss_pred cccchHHHHHHHHHhhhhhhcCCcEEE-EEecC--ChhhHHHHHHcCceecCCCcCCHHhhcC--cCCEEEEccCCchHH
Q 014834 118 GWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRK--GSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDAAQA 192 (417)
Q Consensus 118 G~G~mG~AiA~~Lr~s~~~~~~G~~Vi-Vg~r~--~s~s~~~A~~~G~~~~~~~~~s~~Ea~~--~ADIViLavpd~~~~ 192 (417)
|+|++|..++..|...-.. .++++. |.+++ -...+......... +.+.++++. +.|+||=|+++....
T Consensus 1 G~G~VG~~l~~~l~~~~~~--~~~~v~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~dvvVE~t~~~~~~ 73 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQER--IDLEVVGVADRSMLISKDWAASFPDEAF-----TTDLEELIDDPDIDVVVECTSSEAVA 73 (117)
T ss_dssp --SHHHHHHHHHHHHTHHH--CEEEEEEEEESSEEEETTHHHHHTHSCE-----ESSHHHHHTHTT-SEEEE-SSCHHHH
T ss_pred CCCHHHHHHHHHHHhCccc--CCEEEEEEEECCchhhhhhhhhcccccc-----cCCHHHHhcCcCCCEEEECCCchHHH
Confidence 8999999999999876111 234443 34444 11222222222222 568889888 899999999988777
Q ss_pred HHHHHHHhcCCCCcEEE
Q 014834 193 DNYEKIFSCMKPNSILG 209 (417)
Q Consensus 193 ~Vl~eI~~~lk~gaiLi 209 (417)
+.+.++. +.|.-|+
T Consensus 74 ~~~~~~L---~~G~~VV 87 (117)
T PF03447_consen 74 EYYEKAL---ERGKHVV 87 (117)
T ss_dssp HHHHHHH---HTTCEEE
T ss_pred HHHHHHH---HCCCeEE
Confidence 7776544 4566444
|
Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D .... |
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=92.08 E-value=0.66 Score=46.02 Aligned_cols=69 Identities=17% Similarity=0.184 Sum_probs=48.2
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcC---CHHhhcCcCCEEEEccC
Q 014834 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~---s~~Ea~~~ADIViLavp 187 (417)
|||.|+| .|.+|..+++.|.+. |++|++..|+.++. ......|+....+.+. +..++++++|+|+.++.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~------g~~V~~l~R~~~~~-~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDE------GYQVRCLVRNLRKA-SFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC------CCeEEEEEcChHHh-hhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 4899999 599999999999999 99998887764332 2222335432212222 34677899999998764
|
|
| >PRK01713 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.00 E-value=0.57 Score=47.95 Aligned_cols=71 Identities=17% Similarity=0.121 Sum_probs=49.0
Q ss_pred hccCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecCC----hhhH----HHHHHcCceecCCCcCCHHhhc
Q 014834 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSF----AEARAAGFTEENGTLGDIYETI 176 (417)
Q Consensus 107 ~l~gmkkIgIIG~G--~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~----s~s~----~~A~~~G~~~~~~~~~s~~Ea~ 176 (417)
.++| .||++||-+ ++..+++..+... |++|.+...+. +... +.+++.|.... ...++++++
T Consensus 153 ~l~g-l~ia~vGD~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~ 223 (334)
T PRK01713 153 PLSE-ISYVYIGDARNNMGNSLLLIGAKL------GMDVRICAPKALLPEASLVEMCEKFAKESGARIT--VTDDIDKAV 223 (334)
T ss_pred CcCC-cEEEEECCCccCHHHHHHHHHHHc------CCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 3778 899999987 6788888888877 99887765431 1111 23344563320 157899999
Q ss_pred CcCCEEEEcc
Q 014834 177 SGSDLVLLLI 186 (417)
Q Consensus 177 ~~ADIViLav 186 (417)
++||+|..-+
T Consensus 224 ~~aDvVyt~~ 233 (334)
T PRK01713 224 KGVDFVHTDV 233 (334)
T ss_pred CCCCEEEEcc
Confidence 9999999743
|
|
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.00 E-value=0.27 Score=50.38 Aligned_cols=88 Identities=18% Similarity=0.184 Sum_probs=55.0
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc---EEEEEec--CChhhHHHHHHcCceecCCCcCCHHhh-cCcCCEEEE
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI---VVKVGLR--KGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~---~ViVg~r--~~s~s~~~A~~~G~~~~~~~~~s~~Ea-~~~ADIViL 184 (417)
.+|+|||. |..|.-+.+-|.++ .+ ++..... ...+...... .... +.+.++. ..++|+||+
T Consensus 5 ~~vaIvGATG~vG~ellrlL~~~------~hP~~~l~~laS~~saG~~~~~~~-~~~~-----v~~~~~~~~~~~Dvvf~ 72 (336)
T PRK08040 5 WNIALLGATGAVGEALLELLAER------QFPVGELYALASEESAGETLRFGG-KSVT-----VQDAAEFDWSQAQLAFF 72 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhcC------CCCceEEEEEEccCcCCceEEECC-cceE-----EEeCchhhccCCCEEEE
Confidence 79999997 99999999988874 33 4332222 1122222110 0122 2233333 368999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
++|.....++.+++.+ .|..|++.+|.
T Consensus 73 a~p~~~s~~~~~~~~~---~g~~VIDlS~~ 99 (336)
T PRK08040 73 VAGREASAAYAEEATN---AGCLVIDSSGL 99 (336)
T ss_pred CCCHHHHHHHHHHHHH---CCCEEEECChH
Confidence 9998877777766543 58888877764
|
|
| >TIGR00658 orni_carb_tr ornithine carbamoyltransferase | Back alignment and domain information |
|---|
Probab=91.97 E-value=0.99 Score=45.56 Aligned_cols=69 Identities=17% Similarity=0.174 Sum_probs=48.3
Q ss_pred ccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC----hhhHHH----HHHcCceecCCCcCCHHhhcCc
Q 014834 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLGDIYETISG 178 (417)
Q Consensus 108 l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~----s~s~~~----A~~~G~~~~~~~~~s~~Ea~~~ 178 (417)
++| .||++||- .+...+++..+... |++|.+...+. ....+. +.+.|.... ...++++++++
T Consensus 146 l~g-~~v~~vGd~~~v~~Sl~~~l~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~~~ 216 (304)
T TIGR00658 146 LKG-VKVVYVGDGNNVCNSLMLAGAKL------GMDVVVATPEGYEPDADIVKKAQEIAKENGGSVE--LTHDPVEAVKG 216 (304)
T ss_pred CCC-cEEEEEeCCCchHHHHHHHHHHc------CCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEE--EEcCHHHHhCC
Confidence 678 89999997 68889999888877 99887765332 111222 344563210 14689999999
Q ss_pred CCEEEEc
Q 014834 179 SDLVLLL 185 (417)
Q Consensus 179 ADIViLa 185 (417)
||+|...
T Consensus 217 aDvvy~~ 223 (304)
T TIGR00658 217 ADVIYTD 223 (304)
T ss_pred CCEEEEc
Confidence 9999985
|
Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily. |
| >PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.5 Score=50.17 Aligned_cols=71 Identities=20% Similarity=0.271 Sum_probs=47.1
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhH---HHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF---AEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~---~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
++| ++|+|+|+|.-|.+.++-|++. |.+|++.+.+..... ...++.+... . .....+.+.+.|+||.
T Consensus 6 ~~~-~~v~v~G~G~sG~~~~~~l~~~------g~~v~~~d~~~~~~~~~~~~l~~~~~~~-~--~~~~~~~~~~~d~vV~ 75 (468)
T PRK04690 6 LEG-RRVALWGWGREGRAAYRALRAH------LPAQALTLFCNAVEAREVGALADAALLV-E--TEASAQRLAAFDVVVK 75 (468)
T ss_pred cCC-CEEEEEccchhhHHHHHHHHHc------CCEEEEEcCCCcccchHHHHHhhcCEEE-e--CCCChHHccCCCEEEE
Confidence 467 9999999999999999999999 999988774322111 1222223222 1 1123455678999988
Q ss_pred c--cCC
Q 014834 185 L--ISD 188 (417)
Q Consensus 185 a--vpd 188 (417)
. +|+
T Consensus 76 SpgI~~ 81 (468)
T PRK04690 76 SPGISP 81 (468)
T ss_pred CCCCCC
Confidence 5 454
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.65 Score=45.22 Aligned_cols=87 Identities=14% Similarity=0.196 Sum_probs=53.6
Q ss_pred hhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCC-------------------hhhH---HHHHHc-
Q 014834 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSF---AEARAA- 160 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~-------------------s~s~---~~A~~~- 160 (417)
++.|++ .+|.|||+|-.|..++.+|... |+ ++++.++.. .+.. +..++.
T Consensus 19 q~~L~~-~~VlvvG~GglGs~va~~La~~------Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~in 91 (240)
T TIGR02355 19 QEALKA-SRVLIVGLGGLGCAASQYLAAA------GVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQIN 91 (240)
T ss_pred HHHHhC-CcEEEECcCHHHHHHHHHHHHc------CCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHC
Confidence 678888 9999999999999999999998 76 444433220 0111 111111
Q ss_pred -Cce--ecCCCcC--CHHhhcCcCCEEEEccCCchHHHHHHHH
Q 014834 161 -GFT--EENGTLG--DIYETISGSDLVLLLISDAAQADNYEKI 198 (417)
Q Consensus 161 -G~~--~~~~~~~--s~~Ea~~~ADIViLavpd~~~~~Vl~eI 198 (417)
.+. ..+..+. +..+.++++|+||.++-+......+.+.
T Consensus 92 p~v~i~~~~~~i~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~~ 134 (240)
T TIGR02355 92 PHIAINPINAKLDDAELAALIAEHDIVVDCTDNVEVRNQLNRQ 134 (240)
T ss_pred CCcEEEEEeccCCHHHHHHHhhcCCEEEEcCCCHHHHHHHHHH
Confidence 111 1011111 2456788999999998766555556554
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=91.73 E-value=0.48 Score=53.63 Aligned_cols=66 Identities=21% Similarity=0.164 Sum_probs=47.7
Q ss_pred CCEEEEEcccchHHHH-HHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 111 INQIGVIGWGSQGPAQ-AQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 111 mkkIgIIG~G~mG~Ai-A~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
|++|.|||+|-.|.+. |+-|++. |++|.+.+.......+..++.|+... .....+.+.++|+||+.
T Consensus 4 ~~~i~viG~G~sG~salA~~L~~~------G~~V~~sD~~~~~~~~~L~~~gi~~~---~g~~~~~~~~~d~vV~S 70 (809)
T PRK14573 4 SLFYHFIGIGGIGMSALAHILLDR------GYSVSGSDLSEGKTVEKLKAKGARFF---LGHQEEHVPEDAVVVYS 70 (809)
T ss_pred cceEEEEEecHHhHHHHHHHHHHC------CCeEEEECCCCChHHHHHHHCCCEEe---CCCCHHHcCCCCEEEEC
Confidence 3679999999999997 9999999 99998777543333344456687642 12233567789999875
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=91.49 E-value=0.65 Score=51.30 Aligned_cols=72 Identities=22% Similarity=0.229 Sum_probs=51.1
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCh--------------------hhHHHHHHcCceecCCC
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEENGT 168 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s--------------------~s~~~A~~~G~~~~~~~ 168 (417)
.| ++|+|||.|..|.+.|..|++. |++|+|..+... ...+.+++.|+...-++
T Consensus 326 ~~-~~VaIIGaGpAGLsaA~~L~~~------G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~ 398 (654)
T PRK12769 326 SD-KRVAIIGAGPAGLACADVLARN------GVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNC 398 (654)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCC
Confidence 57 9999999999999999999998 999988876421 12345566776532111
Q ss_pred -c---CCHHhhcCcCCEEEEccC
Q 014834 169 -L---GDIYETISGSDLVLLLIS 187 (417)
Q Consensus 169 -~---~s~~Ea~~~ADIViLavp 187 (417)
+ .+.++.....|.||+++-
T Consensus 399 ~v~~~i~~~~~~~~~DavilAtG 421 (654)
T PRK12769 399 EVGKDISLESLLEDYDAVFVGVG 421 (654)
T ss_pred EeCCcCCHHHHHhcCCEEEEeCC
Confidence 1 134455567999999874
|
|
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=91.39 E-value=0.63 Score=48.64 Aligned_cols=72 Identities=24% Similarity=0.207 Sum_probs=47.8
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChh-hHHHHHH--cCceecCCCcCCHHhhcCcCCEEEE
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARA--AGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~-s~~~A~~--~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
+++ ++|.|+|.|..|.+.|+-|.+. |.+|.+.+..... ..+..++ .|+....+ ...++...+.|+||.
T Consensus 3 ~~~-~~~~v~G~g~~G~~~a~~l~~~------g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g--~~~~~~~~~~d~vv~ 73 (445)
T PRK04308 3 FQN-KKILVAGLGGTGISMIAYLRKN------GAEVAAYDAELKPERVAQIGKMFDGLVFYTG--RLKDALDNGFDILAL 73 (445)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCCCchhHHHHhhccCCcEEEeC--CCCHHHHhCCCEEEE
Confidence 457 8999999999999999999999 9998877654332 1222222 36653111 112334568999998
Q ss_pred c--cCC
Q 014834 185 L--ISD 188 (417)
Q Consensus 185 a--vpd 188 (417)
. +||
T Consensus 74 spgi~~ 79 (445)
T PRK04308 74 SPGISE 79 (445)
T ss_pred CCCCCC
Confidence 5 444
|
|
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.36 E-value=0.53 Score=48.57 Aligned_cols=89 Identities=12% Similarity=0.155 Sum_probs=55.4
Q ss_pred CEEEEEcc-cchHHHHHHHHHh-hhhhhcCCcE---EEEEe--cCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRD-SLAEAKSDIV---VKVGL--RKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~-s~~~~~~G~~---ViVg~--r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
.||||||+ |..|.-+.+-|.+ . .++ +.... +...+......+ ..... -.+.+ ..++.|+||+
T Consensus 6 ~~VaIvGATG~vG~ell~lL~~h~------~f~v~~l~~~aS~~saGk~~~~~~~-~l~v~---~~~~~-~~~~~Divf~ 74 (347)
T PRK06728 6 YHVAVVGATGAVGQKIIELLEKET------KFNIAEVTLLSSKRSAGKTVQFKGR-EIIIQ---EAKIN-SFEGVDIAFF 74 (347)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHCC------CCCcccEEEEECcccCCCCeeeCCc-ceEEE---eCCHH-HhcCCCEEEE
Confidence 68999997 9999999998884 4 554 32222 222222211111 11110 12333 3478999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
++|.....++..+.. +.|..|++.++.
T Consensus 75 a~~~~~s~~~~~~~~---~~G~~VID~Ss~ 101 (347)
T PRK06728 75 SAGGEVSRQFVNQAV---SSGAIVIDNTSE 101 (347)
T ss_pred CCChHHHHHHHHHHH---HCCCEEEECchh
Confidence 999887777776653 358888877764
|
|
| >PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=91.35 E-value=0.85 Score=46.16 Aligned_cols=65 Identities=17% Similarity=0.215 Sum_probs=46.5
Q ss_pred hccCCCEEEEEcc---cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEE
Q 014834 107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 107 ~l~gmkkIgIIG~---G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIVi 183 (417)
.++| +||++||- +++..+++..+..- |+++.+...++-.... . ..+.. ..+++|++++||+|.
T Consensus 153 ~l~g-~kv~~vGD~~~~~v~~Sl~~~~~~~------g~~~~~~~P~~~~~~~--~-~~~~~----~~d~~ea~~~aDvvy 218 (305)
T PRK00856 153 RLEG-LKVAIVGDIKHSRVARSNIQALTRL------GAEVRLIAPPTLLPEG--M-PEYGV----HTDLDEVIEDADVVM 218 (305)
T ss_pred CCCC-CEEEEECCCCCCcHHHHHHHHHHHc------CCEEEEECCcccCccc--c-cceEE----ECCHHHHhCCCCEEE
Confidence 3788 89999997 58999999999887 9988776543211000 0 01232 578999999999988
Q ss_pred Ec
Q 014834 184 LL 185 (417)
Q Consensus 184 La 185 (417)
..
T Consensus 219 t~ 220 (305)
T PRK00856 219 ML 220 (305)
T ss_pred EC
Confidence 74
|
|
| >PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=91.31 E-value=0.78 Score=46.40 Aligned_cols=80 Identities=16% Similarity=0.110 Sum_probs=54.6
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| |+|.|||-+ ..|.+++.-|.+.. ...+..|.+... + +.++++.+++||+||.
T Consensus 153 i~l~G-k~vvViGrS~iVGkPla~lL~~~~--~~~~aTVtvchs---~----------------T~~l~~~~~~ADIvIs 210 (297)
T PRK14167 153 VDTEG-ADVVVVGRSDIVGKPMANLLIQKA--DGGNATVTVCHS---R----------------TDDLAAKTRRADIVVA 210 (297)
T ss_pred CCCCC-CEEEEECCCcccHHHHHHHHhcCc--cCCCCEEEEeCC---C----------------CCCHHHHHhhCCEEEE
Confidence 36899 999999977 78999999987530 000235665422 1 2357788999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
++--.. ++. ..++|+|++|++++
T Consensus 211 AvGkp~---~i~--~~~ik~gaiVIDvG 233 (297)
T PRK14167 211 AAGVPE---LID--GSMLSEGATVIDVG 233 (297)
T ss_pred ccCCcC---ccC--HHHcCCCCEEEEcc
Confidence 876432 222 24578999988754
|
|
| >PRK02102 ornithine carbamoyltransferase; Validated | Back alignment and domain information |
|---|
Probab=91.27 E-value=0.63 Score=47.66 Aligned_cols=71 Identities=17% Similarity=0.209 Sum_probs=49.2
Q ss_pred hccCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecCC----hhhHH----HHHHcCceecCCCcCCHHhhc
Q 014834 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYETI 176 (417)
Q Consensus 107 ~l~gmkkIgIIG~G--~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~----s~s~~----~A~~~G~~~~~~~~~s~~Ea~ 176 (417)
.++| .||++||-+ ++..+++..+... |.+|.+...+. +...+ .++..|.... .+.++++++
T Consensus 152 ~l~g-~~va~vGd~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~ea~ 222 (331)
T PRK02102 152 PLKG-LKLAYVGDGRNNMANSLMVGGAKL------GMDVRICAPKELWPEEELVALAREIAKETGAKIT--ITEDPEEAV 222 (331)
T ss_pred CCCC-CEEEEECCCcccHHHHHHHHHHHc------CCEEEEECCcccccCHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 4678 999999997 8888888888877 98887664432 11122 2334564320 146899999
Q ss_pred CcCCEEEEcc
Q 014834 177 SGSDLVLLLI 186 (417)
Q Consensus 177 ~~ADIViLav 186 (417)
++||+|..-+
T Consensus 223 ~~aDvvyt~~ 232 (331)
T PRK02102 223 KGADVIYTDV 232 (331)
T ss_pred CCCCEEEEcC
Confidence 9999999853
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=91.22 E-value=0.82 Score=43.60 Aligned_cols=76 Identities=18% Similarity=0.245 Sum_probs=48.1
Q ss_pred hhccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH-cCceecCCCcCC----HHhhc-Cc
Q 014834 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLGD----IYETI-SG 178 (417)
Q Consensus 106 ~~l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~-~G~~~~~~~~~s----~~Ea~-~~ 178 (417)
+..++ ++|.|+|. |.+|..+++.|.+. |++|++..|..++....... .++....+.+.+ ..+.+ ..
T Consensus 13 ~~~~~-~~ilItGasG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~ 85 (251)
T PLN00141 13 ENVKT-KTVFVAGATGRTGKRIVEQLLAK------GFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDD 85 (251)
T ss_pred ccccC-CeEEEECCCcHHHHHHHHHHHhC------CCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcC
Confidence 45556 89999995 99999999999998 99988777764332221111 123211111222 23445 57
Q ss_pred CCEEEEccCC
Q 014834 179 SDLVLLLISD 188 (417)
Q Consensus 179 ADIViLavpd 188 (417)
.|+||.+.+.
T Consensus 86 ~d~vi~~~g~ 95 (251)
T PLN00141 86 SDAVICATGF 95 (251)
T ss_pred CCEEEECCCC
Confidence 8999988654
|
|
| >TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein | Back alignment and domain information |
|---|
Probab=91.06 E-value=1 Score=49.61 Aligned_cols=78 Identities=18% Similarity=0.099 Sum_probs=52.0
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EE--EEEecCCh------hhHHHHHHcC--c--eecCC-CcCCHHh
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VV--KVGLRKGS------RSFAEARAAG--F--TEENG-TLGDIYE 174 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~V--iVg~r~~s------~s~~~A~~~G--~--~~~~~-~~~s~~E 174 (417)
+. .||+|||.|.+|.++...|..+ |+ ++ ++.+...+ ...+.|++.+ + ...+. ...+..+
T Consensus 128 R~-akVlVlG~Gg~~s~lv~sL~~s------G~~~I~~vd~D~v~SNlnRIgEl~e~A~~~n~~v~v~~i~~~~~~dl~e 200 (637)
T TIGR03693 128 RN-AKILAAGSGDFLTKLVRSLIDS------GFPRFHAIVTDAEEHALDRIHELAEIAEETDDALLVQEIDFAEDQHLHE 200 (637)
T ss_pred hc-ccEEEEecCchHHHHHHHHHhc------CCCcEEEEeccccchhhhHHHHHHHHHHHhCCCCceEeccCCcchhHHH
Confidence 55 7999999999999999999999 87 33 23333222 3345666522 1 11111 1235778
Q ss_pred hcCcCCEEEEccCCchHHH
Q 014834 175 TISGSDLVLLLISDAAQAD 193 (417)
Q Consensus 175 a~~~ADIViLavpd~~~~~ 193 (417)
+++..|+|++.+-+....+
T Consensus 201 v~~~~DiVi~vsDdy~~~~ 219 (637)
T TIGR03693 201 AFEPADWVLYVSDNGDIDD 219 (637)
T ss_pred hhcCCcEEEEECCCCChHH
Confidence 9999999999988666543
|
Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein. |
| >TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase | Back alignment and domain information |
|---|
Probab=91.03 E-value=0.51 Score=49.04 Aligned_cols=64 Identities=27% Similarity=0.325 Sum_probs=44.2
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHH----HHH-HcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA----EAR-AAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~----~A~-~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
||.|||+|..|.++|+-|++. |++|.+.+........ ..+ ..|+....+ .+ .+.+.++|+||..
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~------G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g--~~-~~~~~~~d~vv~s 69 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKK------GAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTG--LH-LEDLNNADLVVKS 69 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHC------CCEEEEEeCCCCccchhHHHHHhhccCcEEEec--Cc-hHHhccCCEEEEC
Confidence 589999999999999999999 9999877754332111 122 347654211 23 4556889998875
|
|
| >KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.93 E-value=0.5 Score=47.35 Aligned_cols=99 Identities=13% Similarity=0.035 Sum_probs=67.7
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcC-CcEEEEEecCChhhHHHHHHc-----CceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 113 QIGVIGWGSQGPAQAQNLRDSLAEAKS-DIVVKVGLRKGSRSFAEARAA-----GFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~-G~~ViVg~r~~s~s~~~A~~~-----G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
-..|+|.|.|+..+...-... .+ =.+|.|++|..+.+.++|... .+..+-....+.+++++.+|||+-++
T Consensus 140 vL~i~GsG~qA~~hi~ih~~~----~pslreVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~sDIIs~at 215 (333)
T KOG3007|consen 140 VLTIFGSGLQAFWHIYIHIKL----IPSLREVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSNSDIISGAT 215 (333)
T ss_pred EEEEEcccchhHHHHHHHHHh----cccceEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhcccccCceEEecc
Confidence 478999999999887765543 11 227899999988777777732 11111112457889999999999998
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCchhhhh
Q 014834 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGHL 219 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiLi~a~G~~i~~~ 219 (417)
+...-. + ....++||+-|-..++|+.+.-
T Consensus 216 lstePi-l---fgewlkpgthIdlVGsf~p~mh 244 (333)
T KOG3007|consen 216 LSTEPI-L---FGEWLKPGTHIDLVGSFKPVMH 244 (333)
T ss_pred ccCCce-e---eeeeecCCceEeeeccCCchHH
Confidence 853211 1 1245789998989999976433
|
|
| >PRK03515 ornithine carbamoyltransferase subunit I; Provisional | Back alignment and domain information |
|---|
Probab=90.90 E-value=0.86 Score=46.77 Aligned_cols=70 Identities=20% Similarity=0.195 Sum_probs=49.4
Q ss_pred hccCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecCC----hhhH----HHHHHcCceecCCCcCCHHhhc
Q 014834 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSF----AEARAAGFTEENGTLGDIYETI 176 (417)
Q Consensus 107 ~l~gmkkIgIIG~G--~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~----s~s~----~~A~~~G~~~~~~~~~s~~Ea~ 176 (417)
.++| .||++||-+ ++..+++..+..- |+++.+...+. ..-. +.+++.|.... ...+++|++
T Consensus 153 ~l~g-~~ia~vGD~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~--~~~d~~ea~ 223 (336)
T PRK03515 153 AFNE-MTLAYAGDARNNMGNSLLEAAALT------GLDLRLVAPKACWPEAALVTECRALAQKNGGNIT--LTEDIAEGV 223 (336)
T ss_pred CcCC-CEEEEeCCCcCcHHHHHHHHHHHc------CCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 3678 899999986 7899999988877 99887765432 1112 23444563220 157899999
Q ss_pred CcCCEEEEc
Q 014834 177 SGSDLVLLL 185 (417)
Q Consensus 177 ~~ADIViLa 185 (417)
++||+|..-
T Consensus 224 ~~aDvvytd 232 (336)
T PRK03515 224 KGADFIYTD 232 (336)
T ss_pred CCCCEEEec
Confidence 999999985
|
|
| >PLN02342 ornithine carbamoyltransferase | Back alignment and domain information |
|---|
Probab=90.86 E-value=0.91 Score=46.84 Aligned_cols=69 Identities=22% Similarity=0.247 Sum_probs=49.5
Q ss_pred hccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCC----hhhHHHHHHcC---ceecCCCcCCHHhhcCc
Q 014834 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAG---FTEENGTLGDIYETISG 178 (417)
Q Consensus 107 ~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~----s~s~~~A~~~G---~~~~~~~~~s~~Ea~~~ 178 (417)
.++| .||++||-+ ++..+++..+... |++|.+..... ....+.+++.| +.. ..+++|++++
T Consensus 191 ~l~g-lkva~vGD~~nva~Sli~~~~~~------G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~----~~d~~eav~~ 259 (348)
T PLN02342 191 RLEG-TKVVYVGDGNNIVHSWLLLAAVL------PFHFVCACPKGYEPDAKTVEKARAAGISKIEI----TNDPAEAVKG 259 (348)
T ss_pred CcCC-CEEEEECCCchhHHHHHHHHHHc------CCEEEEECCcccccCHHHHHHHHHhCCCcEEE----EcCHHHHhCC
Confidence 3778 899999975 6888888887776 99887665432 22334455545 332 5788999999
Q ss_pred CCEEEEcc
Q 014834 179 SDLVLLLI 186 (417)
Q Consensus 179 ADIViLav 186 (417)
||+|....
T Consensus 260 aDVvy~~~ 267 (348)
T PLN02342 260 ADVVYTDV 267 (348)
T ss_pred CCEEEECC
Confidence 99999874
|
|
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.83 E-value=1.1 Score=45.91 Aligned_cols=92 Identities=11% Similarity=0.102 Sum_probs=55.5
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCc--E-EEEEec--CChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI--V-VKVGLR--KGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~--~-ViVg~r--~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
++|||+| -|..|..+.+.|.++ .+ + +.+... +..+..-.+........+ .. ......+++|++|.+
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~------~f~~~~~~~~AS~rSaG~~~~~f~~~~~~v~~-~~-~~~~~~~~~Divf~~ 73 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEER------HFPFEELVLLASARSAGKKYIEFGGKSIGVPE-DA-ADEFVFSDVDIVFFA 73 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhc------CCCcceEEEEecccccCCccccccCccccCcc-cc-ccccccccCCEEEEe
Confidence 7999997 599999999999886 43 2 223222 211210111111111100 00 122345689999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 186 vpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
.+.....++.++... .|.+|++.++.
T Consensus 74 ag~~~s~~~~p~~~~---~G~~VIdnsSa 99 (334)
T COG0136 74 AGGSVSKEVEPKAAE---AGCVVIDNSSA 99 (334)
T ss_pred CchHHHHHHHHHHHH---cCCEEEeCCcc
Confidence 998888777776654 58888887764
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=90.60 E-value=1.9 Score=42.39 Aligned_cols=91 Identities=21% Similarity=0.280 Sum_probs=62.4
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHH----HcCceecCCCcCCHHhhcC---cCC
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----AAGFTEENGTLGDIYETIS---GSD 180 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~----~~G~~~~~~~~~s~~Ea~~---~AD 180 (417)
|.| ++|.=|||| |+.++.-|.+. |.+|+ +.+-.++..+.|+ +.|+.. +-...+.+|+.. .-|
T Consensus 58 l~g-~~vLDvGCG--gG~Lse~mAr~------Ga~Vt-giD~se~~I~~Ak~ha~e~gv~i-~y~~~~~edl~~~~~~FD 126 (243)
T COG2227 58 LPG-LRVLDVGCG--GGILSEPLARL------GASVT-GIDASEKPIEVAKLHALESGVNI-DYRQATVEDLASAGGQFD 126 (243)
T ss_pred CCC-CeEEEecCC--ccHhhHHHHHC------CCeeE-EecCChHHHHHHHHhhhhccccc-cchhhhHHHHHhcCCCcc
Confidence 778 999999998 45777777777 88875 6666566666665 455553 222345666665 579
Q ss_pred EEEEc-----cCCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 181 LVLLL-----ISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 181 IViLa-----vpd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
+|+.+ +|+... ++..+...+|||-++.++
T Consensus 127 vV~cmEVlEHv~dp~~--~~~~c~~lvkP~G~lf~S 160 (243)
T COG2227 127 VVTCMEVLEHVPDPES--FLRACAKLVKPGGILFLS 160 (243)
T ss_pred EEEEhhHHHccCCHHH--HHHHHHHHcCCCcEEEEe
Confidence 88764 555433 777888999999877655
|
|
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=90.57 E-value=0.43 Score=48.97 Aligned_cols=64 Identities=20% Similarity=0.162 Sum_probs=42.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCh-hhHHHHHHcCceecCCCcCC---HHhhcCcCCEEEE
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGD---IYETISGSDLVLL 184 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s-~s~~~A~~~G~~~~~~~~~s---~~Ea~~~ADIViL 184 (417)
|++|||||.|..|..+++..++. |++|++.+.... .....+ ..... ....| +.++++.+|+|..
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~l------G~~v~~~d~~~~~pa~~~a--d~~~~--~~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPL------GYKVIVLDPDPDSPAAQVA--DEVIV--ADYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc------CCEEEEEeCCCCCchhHhC--ceEEe--cCCCCHHHHHHHHhcCCEEEe
Confidence 58999999999999999999998 999887765422 222222 22221 01223 4567788888753
|
|
| >PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated | Back alignment and domain information |
|---|
Probab=90.49 E-value=1.1 Score=47.16 Aligned_cols=71 Identities=17% Similarity=0.182 Sum_probs=48.9
Q ss_pred hccCCCEEEEEcc-----c---chHHHHHHHHHhhhhhhcCCcEEEEEecCC----hhhHHH----HHHcCceecCCCcC
Q 014834 107 AFNGINQIGVIGW-----G---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLG 170 (417)
Q Consensus 107 ~l~gmkkIgIIG~-----G---~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~----s~s~~~----A~~~G~~~~~~~~~ 170 (417)
.++| +||+|+|- | ++..+++..+..- |++|.+...+. +...+. +++.|.... ...
T Consensus 184 ~l~g-~kVaivg~~~~~~g~~~~Va~Sl~~~~~~l------G~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~--~~~ 254 (395)
T PRK07200 184 NLKG-KKIAMTWAYSPSYGKPLSVPQGIIGLMTRF------GMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFR--QVN 254 (395)
T ss_pred ccCC-CEEEEEeccccccCCcchHHHHHHHHHHHc------CCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEE--EEc
Confidence 3677 89999985 4 6778888888777 99887765442 222233 444563220 147
Q ss_pred CHHhhcCcCCEEEEcc
Q 014834 171 DIYETISGSDLVLLLI 186 (417)
Q Consensus 171 s~~Ea~~~ADIViLav 186 (417)
+++|++++||+|...+
T Consensus 255 d~~eav~~aDvVYtd~ 270 (395)
T PRK07200 255 SMEEAFKDADIVYPKS 270 (395)
T ss_pred CHHHHhCCCCEEEEcC
Confidence 8999999999999874
|
|
| >TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=90.48 E-value=0.84 Score=46.62 Aligned_cols=95 Identities=19% Similarity=0.132 Sum_probs=53.0
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC-ChhhHHHHHHcCce---------ec------CCC---cC---
Q 014834 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFT---------EE------NGT---LG--- 170 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~-~s~s~~~A~~~G~~---------~~------~~~---~~--- 170 (417)
||||+|+|.+|+.+.+.|.++- .+.+++|..-++. +.+......+++-+ .. ++. +.
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~--~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~ 78 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESG--ERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSP 78 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcC--CCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcC
Confidence 6999999999999999988650 0013565433332 22223333332210 00 000 11
Q ss_pred CHHhh---cCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 171 DIYET---ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 171 s~~Ea---~~~ADIViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
++++. -.+.|+|+.|++.....+.... +++.|+.+++.+
T Consensus 79 ~p~~~~w~~~gvDiVie~tG~~~s~e~a~~---~l~aGa~~V~~S 120 (325)
T TIGR01532 79 TPEALPWRALGVDLVLDCTGVYGNREQGER---HIRAGAKRVLFS 120 (325)
T ss_pred ChhhccccccCCCEEEEccchhccHHHHHH---HHHcCCeEEEec
Confidence 33332 1478999999998877665543 455676655444
|
Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species. |
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=90.46 E-value=1.1 Score=49.77 Aligned_cols=74 Identities=24% Similarity=0.204 Sum_probs=50.7
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCh--------------------hhHHHHHHcCceecC
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEEN 166 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s--------------------~s~~~A~~~G~~~~~ 166 (417)
.-.+ ++|+|||.|..|.+.|..|+.. |++|++..+... ...+...+.|+...-
T Consensus 190 ~~~~-k~VaIIGaGpAGl~aA~~La~~------G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~ 262 (652)
T PRK12814 190 PKSG-KKVAIIGAGPAGLTAAYYLLRK------GHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRF 262 (652)
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEe
Confidence 3467 8999999999999999999998 998888765421 113444566765421
Q ss_pred CCc----CCHHhhcCcCCEEEEccC
Q 014834 167 GTL----GDIYETISGSDLVLLLIS 187 (417)
Q Consensus 167 ~~~----~s~~Ea~~~ADIViLavp 187 (417)
++. .+.++.....|.||+++-
T Consensus 263 ~~~v~~dv~~~~~~~~~DaVilAtG 287 (652)
T PRK12814 263 NTVFGRDITLEELQKEFDAVLLAVG 287 (652)
T ss_pred CCcccCccCHHHHHhhcCEEEEEcC
Confidence 111 124444456899999875
|
|
| >KOG1495 consensus Lactate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=90.20 E-value=1.4 Score=44.38 Aligned_cols=124 Identities=22% Similarity=0.245 Sum_probs=67.4
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhHHHHHHc--C--ceecCCC-cCCHHhhcCc
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--G--FTEENGT-LGDIYETISG 178 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~~~A~~~--G--~~~~~~~-~~s~~Ea~~~ 178 (417)
..++. .||.|+|.|+.|.|.|..+..+ |+ ++.+.+-...+..-++.+. | |...-.. ...--.+.++
T Consensus 16 ~~~~~-~KItVVG~G~VGmAca~siL~k------~Ladel~lvDv~~dklkGE~MDLqH~s~f~~~~~V~~~~Dy~~sa~ 88 (332)
T KOG1495|consen 16 KEFKH-NKITVVGVGQVGMACAISILLK------GLADELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVVASKDYSVSAN 88 (332)
T ss_pred ccccC-ceEEEEccchHHHHHHHHHHHh------hhhhceEEEecCcchhhhhhhhhccccccccCCceEecCcccccCC
Confidence 44555 8999999999999999998887 76 4444443333222222221 1 2110000 1112245678
Q ss_pred CCEEEEccCCchH------------HHHHHHHHhcC---CCCcEEEEec-Cchh-hhhhhcccCCCCCccEEEecc
Q 014834 179 SDLVLLLISDAAQ------------ADNYEKIFSCM---KPNSILGLSH-GFLL-GHLQSIGLDFPKNIGVIAVCP 237 (417)
Q Consensus 179 ADIViLavpd~~~------------~~Vl~eI~~~l---k~gaiLi~a~-G~~i-~~~~~~~i~~~~dv~VI~v~P 237 (417)
+|+||+..-..+. .++++.|.|.+ .|++++++++ -+.+ .|..-+.-.+|++ +||..--
T Consensus 89 S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVDilTYv~wKLSgfP~n-RViGsGc 163 (332)
T KOG1495|consen 89 SKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVDILTYVTWKLSGFPKN-RVIGSGC 163 (332)
T ss_pred CcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchHHHHHHHHHHcCCccc-ceeccCc
Confidence 9999997643322 24555665553 6788766444 4433 2332222256665 5665333
|
|
| >PLN02477 glutamate dehydrogenase | Back alignment and domain information |
|---|
Probab=90.04 E-value=0.64 Score=49.00 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=30.6
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEE-EEe
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGL 147 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vi-Vg~ 147 (417)
..++| ++|+|.|+|+.|...|+-|.+. |..|+ |.+
T Consensus 202 ~~l~g-~~VaIqGfGnVG~~~A~~L~e~------GakVVaVsD 237 (410)
T PLN02477 202 KSIAG-QTFVIQGFGNVGSWAAQLIHEK------GGKIVAVSD 237 (410)
T ss_pred CCccC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEEC
Confidence 46889 9999999999999999999998 98876 444
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.00 E-value=1.7 Score=41.15 Aligned_cols=36 Identities=25% Similarity=0.240 Sum_probs=31.6
Q ss_pred hccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 014834 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 107 ~l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~ 149 (417)
.++| ++|-|+|. |-+|.++++.|.+. |++|++..|+
T Consensus 4 ~~~~-~~vlItGasggIG~~~a~~l~~~------G~~v~~~~r~ 40 (255)
T PRK06057 4 RLAG-RVAVITGGGSGIGLATARRLAAE------GATVVVGDID 40 (255)
T ss_pred cCCC-CEEEEECCCchHHHHHHHHHHHc------CCEEEEEeCC
Confidence 4778 99999998 89999999999998 9998877665
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=89.93 E-value=0.5 Score=41.29 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=26.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEec
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r 148 (417)
+||.|||+|..|..++.+|... |+ ++.+.++
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~------Gv~~i~lvD~ 34 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARS------GVGKITLVDD 34 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHH------TTSEEEEEES
T ss_pred CEEEEECcCHHHHHHHHHHHHh------CCCceeecCC
Confidence 7999999999999999999999 87 5666654
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >TIGR01082 murC UDP-N-acetylmuramate--alanine ligase | Back alignment and domain information |
|---|
Probab=89.92 E-value=0.89 Score=47.70 Aligned_cols=64 Identities=20% Similarity=0.235 Sum_probs=45.1
Q ss_pred EEEEEcccchHHH-HHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 113 QIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 113 kIgIIG~G~mG~A-iA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
+|-|||.|-.|.+ +|+-|++. |++|.+.+.......+..++.|+... .....+.++++|+||+.
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~------G~~v~~~D~~~~~~~~~l~~~gi~~~---~g~~~~~~~~~d~vV~s 65 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNR------GYQVSGSDIAENATTKRLEALGIPIY---IGHSAENLDDADVVVVS 65 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHC------CCeEEEECCCcchHHHHHHHCcCEEe---CCCCHHHCCCCCEEEEC
Confidence 4789999999998 99999999 99998777543333333455677642 11223456789999875
|
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081. |
| >PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=89.91 E-value=1 Score=45.75 Aligned_cols=64 Identities=9% Similarity=0.175 Sum_probs=46.0
Q ss_pred ccCCCEEEEEcc---cchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHH-cCceecCCCcCCHHhhcCcCCEE
Q 014834 108 FNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA-AGFTEENGTLGDIYETISGSDLV 182 (417)
Q Consensus 108 l~gmkkIgIIG~---G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~-~G~~~~~~~~~s~~Ea~~~ADIV 182 (417)
++| .||++||= +++..+++..+..- |. ++.+.....- ...... ..+.. +.++++++++||+|
T Consensus 155 l~g-~~va~vGD~~~~rv~~Sl~~~~a~~------g~~~v~~~~P~~~--~p~~~~~~~~~~----~~d~~ea~~~aDvv 221 (310)
T PRK13814 155 WNK-LCVTIIGDIRHSRVANSLMDGLVTM------GVPEIRLVGPSSL--LPDKVGNDSIKK----FTELKPSLLNSDVI 221 (310)
T ss_pred cCC-cEEEEECCCCCCcHHHHHHHHHHHc------CCCEEEEeCCccc--CcCccccceEEE----EcCHHHHhCCCCEE
Confidence 678 89999998 59999999999887 98 7776654321 111111 12443 57899999999999
Q ss_pred EE
Q 014834 183 LL 184 (417)
Q Consensus 183 iL 184 (417)
..
T Consensus 222 y~ 223 (310)
T PRK13814 222 VT 223 (310)
T ss_pred EE
Confidence 87
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=89.88 E-value=2.5 Score=42.38 Aligned_cols=88 Identities=20% Similarity=0.185 Sum_probs=56.1
Q ss_pred cCCCEEEEEcccchHHHHHHHHHh-hhhhhcCC-cEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcC--cCCEEEE
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRD-SLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLL 184 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~-s~~~~~~G-~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~--~ADIViL 184 (417)
.| .+|.|+|+|.+|...++-++. . | .+|++..+.+ ...+.+++.|... ..++..+ ..|+||=
T Consensus 163 ~g-~~VlV~G~G~vGl~~~~~a~~~~------g~~~vi~~~~~~-~k~~~a~~~~~~~------~~~~~~~~~g~d~viD 228 (341)
T cd08237 163 DR-NVIGVWGDGNLGYITALLLKQIY------PESKLVVFGKHQ-EKLDLFSFADETY------LIDDIPEDLAVDHAFE 228 (341)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHhc------CCCcEEEEeCcH-hHHHHHhhcCcee------ehhhhhhccCCcEEEE
Confidence 46 899999999999988877775 3 3 4666655543 3456666655432 1112222 4799998
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEE
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGL 210 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~ 210 (417)
++........+++....++++-.+++
T Consensus 229 ~~G~~~~~~~~~~~~~~l~~~G~iv~ 254 (341)
T cd08237 229 CVGGRGSQSAINQIIDYIRPQGTIGL 254 (341)
T ss_pred CCCCCccHHHHHHHHHhCcCCcEEEE
Confidence 88743334456666667787766553
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=89.84 E-value=0.62 Score=47.65 Aligned_cols=87 Identities=15% Similarity=0.205 Sum_probs=54.6
Q ss_pred EEEEEc-ccchHHHHHHHHHhhhhhhcCCcE---EEEEecC--ChhhHHHHHHcCceecCCCcCCH-HhhcCcCCEEEEc
Q 014834 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIV---VKVGLRK--GSRSFAEARAAGFTEENGTLGDI-YETISGSDLVLLL 185 (417)
Q Consensus 113 kIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~---ViVg~r~--~s~s~~~A~~~G~~~~~~~~~s~-~Ea~~~ADIViLa 185 (417)
||+||| .|..|..+++-|.+. ++. +.+..+. ..+... -.|... .+.+. .+.++++|+||++
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~------~hp~~~l~~~as~~~~g~~~~---~~~~~~---~~~~~~~~~~~~~D~v~~a 68 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEER------NFPIDKLVLLASDRSAGRKVT---FKGKEL---EVNEAKIESFEGIDIALFS 68 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhC------CCChhhEEEEeccccCCCeee---eCCeeE---EEEeCChHHhcCCCEEEEC
Confidence 689999 899999999998876 663 2222222 122221 112111 01111 2345889999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 186 vpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
+|.....++.+++. +.|..|++.++.
T Consensus 69 ~g~~~s~~~a~~~~---~~G~~VID~ss~ 94 (339)
T TIGR01296 69 AGGSVSKEFAPKAA---KCGAIVIDNTSA 94 (339)
T ss_pred CCHHHHHHHHHHHH---HCCCEEEECCHH
Confidence 99988877776653 357778877764
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=89.79 E-value=0.89 Score=47.72 Aligned_cols=73 Identities=18% Similarity=0.166 Sum_probs=52.1
Q ss_pred ccCCCEEEEEccc----------chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHc--CceecCCCcCCHHhh
Q 014834 108 FNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEENGTLGDIYET 175 (417)
Q Consensus 108 l~gmkkIgIIG~G----------~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~--G~~~~~~~~~s~~Ea 175 (417)
|+| |+|||.|+- +-...++..|.+. |.+|++++... .+.+... ++.. ..+.+++
T Consensus 308 l~G-k~iavlgLafKpnTDD~ReSpa~~vi~~L~~~------Ga~V~aYDP~a---~~~~~~~~~~~~~----~~~~~~~ 373 (414)
T COG1004 308 LKG-KTIAVLGLAFKPNTDDMRESPALDIIKRLQEK------GAEVIAYDPVA---MENAFRNFPDVEL----ESDAEEA 373 (414)
T ss_pred CCC-cEEEEEEEeecCCCccchhchHHHHHHHHHHC------CCEEEEECchh---hHHHHhcCCCceE----eCCHHHH
Confidence 889 999999984 3345566666666 99998776532 2233222 2343 6789999
Q ss_pred cCcCCEEEEccCCchHHHH
Q 014834 176 ISGSDLVLLLISDAAQADN 194 (417)
Q Consensus 176 ~~~ADIViLavpd~~~~~V 194 (417)
+++||+|++++-.+...++
T Consensus 374 ~~~aDaivi~tew~ef~~~ 392 (414)
T COG1004 374 LKGADAIVINTEWDEFRDL 392 (414)
T ss_pred HhhCCEEEEeccHHHHhcc
Confidence 9999999999998777653
|
|
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.77 E-value=0.45 Score=49.33 Aligned_cols=66 Identities=17% Similarity=0.145 Sum_probs=42.7
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC-ChhhHHHHHHcCceecC-CCcCCHHhhcCcCCEEEE
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTEEN-GTLGDIYETISGSDLVLL 184 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~-~s~s~~~A~~~G~~~~~-~~~~s~~Ea~~~ADIViL 184 (417)
|++|||||-|..|.=|+..-+.- |+++++.+.. +.+....| ......+ .....+.|+++.||+|-.
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~l------G~~v~vLdp~~~~PA~~va--~~~i~~~~dD~~al~ela~~~DViT~ 68 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARL------GIKVIVLDPDADAPAAQVA--DRVIVAAYDDPEALRELAAKCDVITY 68 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhc------CCEEEEecCCCCCchhhcc--cceeecCCCCHHHHHHHHhhCCEEEE
Confidence 48999999999999999988887 9998876533 22222222 2222100 001136678888998854
|
|
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.73 E-value=3.3 Score=43.50 Aligned_cols=87 Identities=11% Similarity=0.189 Sum_probs=54.6
Q ss_pred hhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecC----------------C------hhhHHHH---H
Q 014834 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK----------------G------SRSFAEA---R 158 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~----------------~------s~s~~~A---~ 158 (417)
.+.|++ .+|+|||+|-.|..++..|.+. |+ ++++.+.. + .+....+ .
T Consensus 171 q~kL~~-~~VaIVG~GG~GS~Va~~LAR~------GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~ 243 (393)
T PRK06153 171 SAKLEG-QRIAIIGLGGTGSYILDLVAKT------PVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYS 243 (393)
T ss_pred HHHHhh-CcEEEEcCCccHHHHHHHHHHc------CCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHH
Confidence 477888 9999999999999999999998 77 44443321 0 0100011 1
Q ss_pred Hc--CceecCCCcC-CHHhhcCcCCEEEEccCCchHHHHHHHH
Q 014834 159 AA--GFTEENGTLG-DIYETISGSDLVLLLISDAAQADNYEKI 198 (417)
Q Consensus 159 ~~--G~~~~~~~~~-s~~Ea~~~ADIViLavpd~~~~~Vl~eI 198 (417)
+. ++......+. +..+.+.++|+||.|+-......++.+.
T Consensus 244 ~in~~I~~~~~~I~~~n~~~L~~~DiV~dcvDn~~aR~~ln~~ 286 (393)
T PRK06153 244 NMRRGIVPHPEYIDEDNVDELDGFTFVFVCVDKGSSRKLIVDY 286 (393)
T ss_pred HhCCeEEEEeecCCHHHHHHhcCCCEEEEcCCCHHHHHHHHHH
Confidence 11 2322111121 2234678999999999988877766653
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.68 E-value=5.6 Score=37.19 Aligned_cols=36 Identities=25% Similarity=0.253 Sum_probs=30.7
Q ss_pred ccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 014834 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (417)
Q Consensus 108 l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~ 150 (417)
++| ++|-|.|. |-+|.++++.|.+. |++|++..|+.
T Consensus 4 ~~~-k~vlItGasggiG~~l~~~l~~~------G~~V~~~~r~~ 40 (248)
T PRK07806 4 LPG-KTALVTGSSRGIGADTAKILAGA------GAHVVVNYRQK 40 (248)
T ss_pred CCC-cEEEEECCCCcHHHHHHHHHHHC------CCEEEEEeCCc
Confidence 567 89999996 89999999999998 99987776653
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.68 E-value=2.1 Score=40.58 Aligned_cols=83 Identities=17% Similarity=0.078 Sum_probs=49.8
Q ss_pred ccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc-
Q 014834 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL- 185 (417)
Q Consensus 108 l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa- 185 (417)
++| |++.|+|. |-+|.++++.|.+. |.+|++..++.....+...+.+ ...+.+=
T Consensus 5 l~~-k~~lItGas~gIG~~~a~~l~~~------G~~v~~~~~~~~~~~~~l~~~~-----------------~~~~~~Dl 60 (255)
T PRK06463 5 FKG-KVALITGGTRGIGRAIAEAFLRE------GAKVAVLYNSAENEAKELREKG-----------------VFTIKCDV 60 (255)
T ss_pred cCC-CEEEEeCCCChHHHHHHHHHHHC------CCEEEEEeCCcHHHHHHHHhCC-----------------CeEEEecC
Confidence 567 89999995 79999999999998 9988766554332222111111 1122221
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 186 vpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
..+....++++++...+.+=.+|++++|+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~id~li~~ag~ 89 (255)
T PRK06463 61 GNRDQVKKSKEVVEKEFGRVDVLVNNAGI 89 (255)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 22334456666666555333467777776
|
|
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=89.57 E-value=3.1 Score=42.69 Aligned_cols=91 Identities=20% Similarity=0.215 Sum_probs=57.2
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec-CCC-cCCHHhhcCcCCEEEEcc
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGT-LGDIYETISGSDLVLLLI 186 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~-~~~-~~s~~Ea~~~ADIViLav 186 (417)
.| .+|.|.|.|.+|...++-.+.. |.+|++..+.+++..+.+++.|.... +.. .....+.....|+|+-++
T Consensus 178 ~g-~~VlV~G~G~vG~~avq~Ak~~------Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~D~vid~~ 250 (375)
T PLN02178 178 SG-KRLGVNGLGGLGHIAVKIGKAF------GLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTV 250 (375)
T ss_pred CC-CEEEEEcccHHHHHHHHHHHHc------CCeEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHHHHhhCCCcEEEECC
Confidence 47 8999999999999999999888 88877665554444667777886420 000 001222334579999888
Q ss_pred CCchHHHHHHHHHhcCCCCcEEE
Q 014834 187 SDAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiLi 209 (417)
.... .+.+....++++-.++
T Consensus 251 G~~~---~~~~~~~~l~~~G~iv 270 (375)
T PLN02178 251 SAEH---ALLPLFSLLKVSGKLV 270 (375)
T ss_pred CcHH---HHHHHHHhhcCCCEEE
Confidence 6432 2333334455555444
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.55 E-value=1.9 Score=41.20 Aligned_cols=38 Identities=21% Similarity=0.112 Sum_probs=32.0
Q ss_pred hccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCh
Q 014834 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (417)
Q Consensus 107 ~l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s 151 (417)
.+++ |++-|.|. |-+|.++++.|.+. |.+|++..|+..
T Consensus 3 ~~~~-k~vlItGas~gIG~~ia~~l~~~------G~~V~~~~r~~~ 41 (261)
T PRK08265 3 GLAG-KVAIVTGGATLIGAAVARALVAA------GARVAIVDIDAD 41 (261)
T ss_pred CCCC-CEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCHH
Confidence 3667 89999996 78999999999998 999888777543
|
|
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=89.50 E-value=0.47 Score=48.55 Aligned_cols=34 Identities=32% Similarity=0.336 Sum_probs=30.8
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~ 150 (417)
|++|.|||.|.+|.+.|..|.+. |.+|+|..+..
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~------g~~V~vle~~~ 34 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQR------GYQVTVFDRHR 34 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC------CCeEEEEeCCC
Confidence 57999999999999999999998 99998887753
|
|
| >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Probab=89.44 E-value=1.5 Score=46.72 Aligned_cols=74 Identities=26% Similarity=0.236 Sum_probs=49.6
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCh--------------------hhHHHHHHcCceecC
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEEN 166 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s--------------------~s~~~A~~~G~~~~~ 166 (417)
.-.| ++|.|||.|..|.+.|..|++. |++|++..+... ...+..++.|+...-
T Consensus 140 ~~~~-~~V~IIGaG~aGl~aA~~L~~~------g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~ 212 (485)
T TIGR01317 140 KRTG-KKVAVVGSGPAGLAAADQLNRA------GHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVT 212 (485)
T ss_pred CCCC-CEEEEECCcHHHHHHHHHHHHc------CCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEEC
Confidence 3357 8999999999999999999998 998887754321 112344567765421
Q ss_pred CC-c---CCHHhhcCcCCEEEEccC
Q 014834 167 GT-L---GDIYETISGSDLVLLLIS 187 (417)
Q Consensus 167 ~~-~---~s~~Ea~~~ADIViLavp 187 (417)
+. + .+.++.....|.||+++-
T Consensus 213 ~~~v~~~~~~~~~~~~~d~VilAtG 237 (485)
T TIGR01317 213 NTEIGVDISADELKEQFDAVVLAGG 237 (485)
T ss_pred CCEeCCccCHHHHHhhCCEEEEccC
Confidence 11 1 123344456899999874
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. |
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.40 E-value=1.8 Score=41.41 Aligned_cols=85 Identities=19% Similarity=0.161 Sum_probs=50.7
Q ss_pred ccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 108 l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
++| ++|-|.|. |-+|.++++.|.+. |.+|++..|+.++..+...+.+ . .+ .-.+|+ .
T Consensus 3 ~~~-~~ilVtGasggiG~~la~~l~~~------G~~v~~~~r~~~~~~~~~~~~~-~---------~~-~~~~D~----~ 60 (273)
T PRK07825 3 LRG-KVVAITGGARGIGLATARALAAL------GARVAIGDLDEALAKETAAELG-L---------VV-GGPLDV----T 60 (273)
T ss_pred CCC-CEEEEeCCCchHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHhc-c---------ce-EEEccC----C
Confidence 567 89999996 78999999999998 9998877775433222222211 0 00 011232 2
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
.+....++++++.....+=.+|++.+|+
T Consensus 61 ~~~~~~~~~~~~~~~~~~id~li~~ag~ 88 (273)
T PRK07825 61 DPASFAAFLDAVEADLGPIDVLVNNAGV 88 (273)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 2333445666665544333467777776
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.36 E-value=4.6 Score=37.44 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=31.9
Q ss_pred ccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChh
Q 014834 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR 152 (417)
Q Consensus 108 l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~ 152 (417)
++| ++|.|.|. |.+|.++++.|.+. |.+|++..|+.++
T Consensus 3 ~~~-~~vlItGa~g~iG~~~a~~l~~~------G~~V~~~~r~~~~ 41 (238)
T PRK05786 3 LKG-KKVAIIGVSEGLGYAVAYFALKE------GAQVCINSRNENK 41 (238)
T ss_pred cCC-cEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCCHHH
Confidence 567 89999997 67999999999998 9999888776543
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.29 E-value=1.6 Score=41.59 Aligned_cols=43 Identities=16% Similarity=0.115 Sum_probs=34.1
Q ss_pred cccchhhccCCCEEEEEcc-c-chHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 014834 101 FKLLPDAFNGINQIGVIGW-G-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (417)
Q Consensus 101 f~~~~~~l~gmkkIgIIG~-G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~ 150 (417)
++....-++| +++-|.|. | -+|.++++.|.+. |.+|++..+..
T Consensus 8 ~~~~~~~~~~-k~vlItG~sg~gIG~~ia~~l~~~------G~~V~~~~~~~ 52 (262)
T PRK07831 8 YVPGHGLLAG-KVVLVTAAAGTGIGSATARRALEE------GARVVISDIHE 52 (262)
T ss_pred CCCcccccCC-CEEEEECCCcccHHHHHHHHHHHc------CCEEEEEeCCH
Confidence 3334456778 99999997 6 5999999999998 99988776653
|
|
| >PRK06392 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.26 E-value=1 Score=46.05 Aligned_cols=100 Identities=15% Similarity=0.148 Sum_probs=49.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhh--hcCCcEEE-EEecCCh----h-----hHHHHHHcC-ceecCCCcCCHHhhc-C
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAE--AKSDIVVK-VGLRKGS----R-----SFAEARAAG-FTEENGTLGDIYETI-S 177 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~--~~~G~~Vi-Vg~r~~s----~-----s~~~A~~~G-~~~~~~~~~s~~Ea~-~ 177 (417)
+||+|||+|++|..+++.|.+.-+. .+.+++|+ |.+++.. . .+....+.| +...+-...+.++++ .
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~ 80 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEI 80 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcC
Confidence 3899999999999999998873111 12244433 3343321 0 111111112 110000001344443 4
Q ss_pred cCCEEEEccCCchH-HHHHHHHHhcCCCCcEEEEe
Q 014834 178 GSDLVLLLISDAAQ-ADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 178 ~ADIViLavpd~~~-~~Vl~eI~~~lk~gaiLi~a 211 (417)
++|+||=++|.... ...+.-+.+.|+.|.-|+.+
T Consensus 81 ~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTa 115 (326)
T PRK06392 81 KPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTA 115 (326)
T ss_pred CCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcC
Confidence 67999999874321 12333445556677755533
|
|
| >PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=89.25 E-value=1.2 Score=46.50 Aligned_cols=68 Identities=15% Similarity=0.213 Sum_probs=44.7
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhh-HHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s-~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
+.+ ++|.|||+|..|.+.++-|++. |.+|.+.+...... .+. .+.|+....+ ....+.++..|+||..
T Consensus 4 ~~~-~~i~v~G~G~sG~s~~~~l~~~------G~~v~~~D~~~~~~~~~~-l~~g~~~~~~--~~~~~~~~~~d~vv~s 72 (438)
T PRK03806 4 YQG-KKVVIIGLGLTGLSCVDFFLAR------GVTPRVIDTRITPPGLDK-LPENVERHTG--SLNDEWLLAADLIVAS 72 (438)
T ss_pred cCC-CEEEEEeeCHHHHHHHHHHHHC------CCeEEEEcCCCCchhHHH-HhcCCEEEeC--CCCHHHhcCCCEEEEC
Confidence 456 8999999999999999999988 99987766443221 122 2337653110 1233456778987764
|
|
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=89.25 E-value=1.4 Score=44.20 Aligned_cols=37 Identities=19% Similarity=0.213 Sum_probs=30.7
Q ss_pred hhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEec
Q 014834 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r 148 (417)
++.|+. .+|.|||+|-.|..+|+||..+ |+ .+.+.+.
T Consensus 14 q~kL~~-s~VLIvG~gGLG~EiaKnLala------GVg~itI~D~ 51 (286)
T cd01491 14 MKKLQK-SNVLISGLGGLGVEIAKNLILA------GVKSVTLHDT 51 (286)
T ss_pred HHHHhc-CcEEEEcCCHHHHHHHHHHHHc------CCCeEEEEcC
Confidence 466777 8999999999999999999998 87 4555543
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.23 E-value=1.4 Score=41.71 Aligned_cols=88 Identities=15% Similarity=0.062 Sum_probs=52.7
Q ss_pred ccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 108 l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
++| |++-|+|. |.+|.++++.|.+. |.+|++..|..+...+...+ ..+.....++.++.+
T Consensus 7 ~~~-k~~lItGa~~gIG~~~a~~l~~~------G~~v~~~~r~~~~~~~~~~~------------l~~~~~~~~~~~~~~ 67 (257)
T PRK09242 7 LDG-QTALITGASKGIGLAIAREFLGL------GADVLIVARDADALAQARDE------------LAEEFPEREVHGLAA 67 (257)
T ss_pred cCC-CEEEEeCCCchHHHHHHHHHHHc------CCEEEEEeCCHHHHHHHHHH------------HHhhCCCCeEEEEEC
Confidence 567 99999996 79999999999998 99988777754332221111 111111233333322
Q ss_pred ---CCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 187 ---SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 187 ---pd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
.+....+.++++...+.+=.+|++++|.
T Consensus 68 Dl~~~~~~~~~~~~~~~~~g~id~li~~ag~ 98 (257)
T PRK09242 68 DVSDDEDRRAILDWVEDHWDGLHILVNNAGG 98 (257)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 2233445666666555444467777775
|
|
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=89.19 E-value=1.5 Score=46.50 Aligned_cols=75 Identities=24% Similarity=0.214 Sum_probs=50.8
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCh--------------------hhHHHHHHcCceec
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEE 165 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s--------------------~s~~~A~~~G~~~~ 165 (417)
..-.+ ++|.|||.|..|.+.|..|++. |++|++..+.+. ...+...+.|+...
T Consensus 139 ~~~~~-~~VvIIGaGpAGl~aA~~l~~~------G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~ 211 (471)
T PRK12810 139 VKRTG-KKVAVVGSGPAGLAAADQLARA------GHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFR 211 (471)
T ss_pred cCCCC-CEEEEECcCHHHHHHHHHHHhC------CCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEE
Confidence 33467 8999999999999999999998 998888765321 12244566676532
Q ss_pred CCCc----CCHHhhcCcCCEEEEccC
Q 014834 166 NGTL----GDIYETISGSDLVLLLIS 187 (417)
Q Consensus 166 ~~~~----~s~~Ea~~~ADIViLavp 187 (417)
-++. .+..+.....|.||+++-
T Consensus 212 ~~~~v~~~~~~~~~~~~~d~vvlAtG 237 (471)
T PRK12810 212 TNVEVGKDITAEELLAEYDAVFLGTG 237 (471)
T ss_pred eCCEECCcCCHHHHHhhCCEEEEecC
Confidence 1111 123444557899999864
|
|
| >PRK10637 cysG siroheme synthase; Provisional | Back alignment and domain information |
|---|
Probab=89.17 E-value=2.4 Score=44.99 Aligned_cols=79 Identities=20% Similarity=0.141 Sum_probs=54.1
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhH-HHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~-~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
-.|+| ++|.|||-|.+|..=++.|.+. |.+|+|....-.+.. +.+.+..+....+.. . .+-++++++||.
T Consensus 8 ~~l~~-~~vlvvGgG~vA~rk~~~ll~~------ga~v~visp~~~~~~~~l~~~~~i~~~~~~~-~-~~dl~~~~lv~~ 78 (457)
T PRK10637 8 CQLRD-RDCLLVGGGDVAERKARLLLDA------GARLTVNALAFIPQFTAWADAGMLTLVEGPF-D-ESLLDTCWLAIA 78 (457)
T ss_pred EEcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCCCHHHHHHHhCCCEEEEeCCC-C-hHHhCCCEEEEE
Confidence 57899 9999999999999999999998 888877644322222 333322232211121 2 344689999999
Q ss_pred ccCCchHHH
Q 014834 185 LISDAAQAD 193 (417)
Q Consensus 185 avpd~~~~~ 193 (417)
||.|....+
T Consensus 79 at~d~~~n~ 87 (457)
T PRK10637 79 ATDDDAVNQ 87 (457)
T ss_pred CCCCHHHhH
Confidence 999987754
|
|
| >PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=89.13 E-value=1 Score=47.21 Aligned_cols=66 Identities=15% Similarity=0.126 Sum_probs=44.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChh-hHHHHHH--cCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARA--AGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~-s~~~A~~--~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
-.|.|||+|..|.++|+-|++. |++|.+.+..... ..+..++ .|+....+ ....+.+.++|+||..
T Consensus 7 ~~~~v~G~G~sG~s~a~~L~~~------G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~--~~~~~~~~~~d~vV~s 75 (448)
T PRK03803 7 GLHIVVGLGKTGLSVVRFLARQ------GIPFAVMDSREQPPGLDTLAREFPDVELRCG--GFDCELLVQASEIIIS 75 (448)
T ss_pred CeEEEEeecHhHHHHHHHHHhC------CCeEEEEeCCCCchhHHHHHhhcCCcEEEeC--CCChHHhcCCCEEEEC
Confidence 3799999999999999999999 9999877754332 2222233 36653100 1123456789998875
|
|
| >PRK08192 aspartate carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=89.10 E-value=1.5 Score=44.99 Aligned_cols=71 Identities=14% Similarity=0.198 Sum_probs=49.2
Q ss_pred hccCCCEEEEEcc---cchHHHHHHHHHhhhhhhcCCcEEEEEecC----ChhhHHHHHHcCceecCCCcCCHHhhcCcC
Q 014834 107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEARAAGFTEENGTLGDIYETISGS 179 (417)
Q Consensus 107 ~l~gmkkIgIIG~---G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~----~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~A 179 (417)
.++| .||++||- +++..+++..|... .|+++.+.... .....+.+++.|.... .+.+++|++++|
T Consensus 156 ~l~g-~kia~vGD~~~~rv~~Sl~~~l~~~-----~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~--~~~d~~ea~~~a 227 (338)
T PRK08192 156 GIDG-MHIAMVGDLKFGRTVHSLSRLLCMY-----KNVSFTLVSPKELAMPDYVISDIENAGHKIT--ITDQLEGNLDKA 227 (338)
T ss_pred CcCC-CEEEEECcCCCCchHHHHHHHHHHh-----cCCEEEEECCccccCCHHHHHHHHHcCCeEE--EEcCHHHHHccC
Confidence 4788 99999998 58899988876533 17777766543 2233455555564321 157899999999
Q ss_pred CEEEEc
Q 014834 180 DLVLLL 185 (417)
Q Consensus 180 DIViLa 185 (417)
|+|...
T Consensus 228 Dvvyt~ 233 (338)
T PRK08192 228 DILYLT 233 (338)
T ss_pred CEEEEc
Confidence 999985
|
|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=89.09 E-value=1.5 Score=45.62 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=26.0
Q ss_pred hhhccCCCEEEEEcccchHHHHHHHHHhh
Q 014834 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s 133 (417)
++.|+. .+|.|||+|-.|..++++|...
T Consensus 37 q~~L~~-~~VlviG~GGlGs~va~~La~~ 64 (392)
T PRK07878 37 QKRLKN-ARVLVIGAGGLGSPTLLYLAAA 64 (392)
T ss_pred HHHHhc-CCEEEECCCHHHHHHHHHHHHc
Confidence 577788 9999999999999999999998
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=89.09 E-value=5.3 Score=37.12 Aligned_cols=94 Identities=19% Similarity=0.236 Sum_probs=57.3
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec-CCCcCCHHhh-----cCcCCE
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYET-----ISGSDL 181 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~-~~~~~s~~Ea-----~~~ADI 181 (417)
.+| .+|.|+|.|.+|.+.++-++.. |.+|++..++. ...+.+++.|.... +....+..+. -...|+
T Consensus 133 ~~~-~~vli~g~~~~G~~~~~~a~~~------g~~v~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~ 204 (271)
T cd05188 133 KPG-DTVLVLGAGGVGLLAAQLAKAA------GARVIVTDRSD-EKLELAKELGADHVIDYKEEDLEEELRLTGGGGADV 204 (271)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEEcCCH-HHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCE
Confidence 356 8999999999999999988888 88877665543 34555666664320 1001112221 246899
Q ss_pred EEEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 182 ViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
|+.++... ..+......++++..++..+
T Consensus 205 vi~~~~~~---~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 205 VIDAVGGP---ETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred EEECCCCH---HHHHHHHHhcccCCEEEEEc
Confidence 99988863 23334444555655555433
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=89.08 E-value=2 Score=40.66 Aligned_cols=37 Identities=22% Similarity=0.048 Sum_probs=31.4
Q ss_pred hhccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 014834 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 106 ~~l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~ 149 (417)
-.|+| |+|-|+|. |.+|.++++.|.+. |.+|++..+.
T Consensus 6 ~~~~~-k~vlItG~sg~IG~~~a~~l~~~------g~~v~~~~~~ 43 (255)
T PRK05717 6 PGHNG-RVALVTGAARGIGLGIAAWLIAE------GWQVVLADLD 43 (255)
T ss_pred cccCC-CEEEEeCCcchHHHHHHHHHHHc------CCEEEEEcCC
Confidence 35778 99999995 79999999999998 9988776654
|
|
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=89.06 E-value=4 Score=42.19 Aligned_cols=96 Identities=17% Similarity=0.186 Sum_probs=61.7
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCc-CCHHh----hc--CcCCE
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL-GDIYE----TI--SGSDL 181 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~-~s~~E----a~--~~ADI 181 (417)
.| .+|.|+|.|.+|...++.++.. |..+++..+......+.+++.|+...+... .+..+ .. ...|+
T Consensus 185 ~g-~~VlV~G~G~iG~~aiqlAk~~------Ga~~vi~~d~~~~r~~~a~~~Ga~~v~~~~~~~~~~~v~~~~~~~g~Dv 257 (393)
T TIGR02819 185 PG-STVYIAGAGPVGLAAAASAQLL------GAAVVIVGDLNPARLAQARSFGCETVDLSKDATLPEQIEQILGEPEVDC 257 (393)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCHHHHHHHHHcCCeEEecCCcccHHHHHHHHcCCCCCcE
Confidence 46 8999999999999999988888 887555444445567888889874311110 12222 22 24799
Q ss_pred EEEccCCchH-----------HHHHHHHHhcCCCCcEEEEe
Q 014834 182 VLLLISDAAQ-----------ADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 182 ViLavpd~~~-----------~~Vl~eI~~~lk~gaiLi~a 211 (417)
||-++-.... ...+++....++++-.+++.
T Consensus 258 vid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~ 298 (393)
T TIGR02819 258 AVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIP 298 (393)
T ss_pred EEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEe
Confidence 9998875421 23555555667776655543
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >PRK08374 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.03 E-value=2.9 Score=42.77 Aligned_cols=95 Identities=16% Similarity=0.158 Sum_probs=51.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhh--hcCC--cEEE-EEecCCh----------hhHHHHHHcCceec--C--C-CcCC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAE--AKSD--IVVK-VGLRKGS----------RSFAEARAAGFTEE--N--G-TLGD 171 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~--~~~G--~~Vi-Vg~r~~s----------~s~~~A~~~G~~~~--~--~-~~~s 171 (417)
.+|+|+|+|++|...++-|.+.... ...| ++|+ |.+++.. +..+...+.|-... + + ...+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS 82 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence 5899999999999999988773111 1125 3432 3333211 11111112221000 0 0 0125
Q ss_pred HHhhc--CcCCEEEEccCCchHHHHHHHHHhcCCCCcEEE
Q 014834 172 IYETI--SGSDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 172 ~~Ea~--~~ADIViLavpd~~~~~Vl~eI~~~lk~gaiLi 209 (417)
.+|.+ .++|+||=++++....+++.++ ++.|.-|+
T Consensus 83 ~~ell~~~~~DVvVd~t~~~~a~~~~~~a---l~~G~~VV 119 (336)
T PRK08374 83 PEEIVEEIDADIVVDVTNDKNAHEWHLEA---LKEGKSVV 119 (336)
T ss_pred HHHHHhcCCCCEEEECCCcHHHHHHHHHH---HhhCCcEE
Confidence 66766 4799999999876666666554 34555444
|
|
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=88.98 E-value=1.5 Score=47.91 Aligned_cols=72 Identities=21% Similarity=0.180 Sum_probs=50.0
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC--------------------hhhHHHHHHcCceecCCC
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG--------------------SRSFAEARAAGFTEENGT 168 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~--------------------s~s~~~A~~~G~~~~~~~ 168 (417)
++ ++|.|||.|..|.+.|..|++. |++|.+..+.+ .+..+..++.|+...-++
T Consensus 282 ~~-~~v~IIGaG~aGl~aA~~L~~~------G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~ 354 (604)
T PRK13984 282 KN-KKVAIVGSGPAGLSAAYFLATM------GYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNT 354 (604)
T ss_pred CC-CeEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCC
Confidence 56 8999999999999999999998 99888775532 112345566776532111
Q ss_pred -c---CCHHhhcCcCCEEEEccC
Q 014834 169 -L---GDIYETISGSDLVLLLIS 187 (417)
Q Consensus 169 -~---~s~~Ea~~~ADIViLavp 187 (417)
+ .+.++.....|.||+++-
T Consensus 355 ~v~~~~~~~~~~~~yD~vilAtG 377 (604)
T PRK13984 355 RVGKDIPLEELREKHDAVFLSTG 377 (604)
T ss_pred EeCCcCCHHHHHhcCCEEEEEcC
Confidence 1 123445557999999986
|
|
| >TIGR03316 ygeW probable carbamoyltransferase YgeW | Back alignment and domain information |
|---|
Probab=88.84 E-value=1.6 Score=45.23 Aligned_cols=71 Identities=13% Similarity=0.082 Sum_probs=47.7
Q ss_pred hccCCCEEEEEccc--------chHHHHHHHHHhhhhhhcCCcEEEEEecCC----hhhHHH----HHHcCceecCCCcC
Q 014834 107 AFNGINQIGVIGWG--------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLG 170 (417)
Q Consensus 107 ~l~gmkkIgIIG~G--------~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~----s~s~~~----A~~~G~~~~~~~~~ 170 (417)
.|+| +||+|+|.| ++..+++..+... |++|.+..... +...+. +++.|.... .+.
T Consensus 167 ~l~g-~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~--~~~ 237 (357)
T TIGR03316 167 NLKG-KKFAMTWAYSPSYGKPLSVPQGIIGLMTRF------GMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFN--IVN 237 (357)
T ss_pred ccCC-CEEEEEeccccccCccchHHHHHHHHHHHc------CCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEE--EEc
Confidence 3678 899999853 4557778877776 99887765432 222233 334564320 157
Q ss_pred CHHhhcCcCCEEEEcc
Q 014834 171 DIYETISGSDLVLLLI 186 (417)
Q Consensus 171 s~~Ea~~~ADIViLav 186 (417)
+++|+++++|+|..-.
T Consensus 238 d~~ea~~~aDvvyt~~ 253 (357)
T TIGR03316 238 SMDEAFKDADIVYPKS 253 (357)
T ss_pred CHHHHhCCCCEEEECC
Confidence 8999999999999874
|
Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism. |
| >cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively | Back alignment and domain information |
|---|
Probab=88.62 E-value=1.1 Score=45.52 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=20.1
Q ss_pred EEEEEcccchHHHHHHHHHhh
Q 014834 113 QIGVIGWGSQGPAQAQNLRDS 133 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s 133 (417)
||.|||+|-.|..+|++|...
T Consensus 1 kVLIvGaGGLGs~vA~~La~a 21 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGW 21 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHc
Confidence 689999999999999999998
|
This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. |
| >PRK14031 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.58 E-value=2.8 Score=44.75 Aligned_cols=33 Identities=18% Similarity=0.129 Sum_probs=30.1
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEE
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV 145 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViV 145 (417)
..|+| ++|+|.|+||.|...|+.|.+. |..|++
T Consensus 224 ~~l~g-~rVaVQGfGNVG~~aA~~L~e~------GAkVVa 256 (444)
T PRK14031 224 TDLKG-KVCLVSGSGNVAQYTAEKVLEL------GGKVVT 256 (444)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEE
Confidence 46899 9999999999999999999998 998765
|
|
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=88.54 E-value=1.4 Score=45.99 Aligned_cols=88 Identities=10% Similarity=0.036 Sum_probs=54.9
Q ss_pred hhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecC--C-----------------hhhHHHHH---Hc-
Q 014834 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK--G-----------------SRSFAEAR---AA- 160 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~--~-----------------s~s~~~A~---~~- 160 (417)
++.|+. .+|.|||+|-.|..++++|... |+ ++.+.+.. + .+....++ +.
T Consensus 33 q~~L~~-~~VlivG~GGlG~~va~~La~~------Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~n 105 (390)
T PRK07411 33 QKRLKA-ASVLCIGTGGLGSPLLLYLAAA------GIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEIN 105 (390)
T ss_pred HHHHhc-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHC
Confidence 578888 9999999999999999999998 76 34443321 0 01111111 11
Q ss_pred -Ccee--cCCCcC--CHHhhcCcCCEEEEccCCchHHHHHHHHH
Q 014834 161 -GFTE--ENGTLG--DIYETISGSDLVLLLISDAAQADNYEKIF 199 (417)
Q Consensus 161 -G~~~--~~~~~~--s~~Ea~~~ADIViLavpd~~~~~Vl~eI~ 199 (417)
.+.+ ....+. +..+.+.++|+||.|+=+.....++.++.
T Consensus 106 p~v~v~~~~~~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~ 149 (390)
T PRK07411 106 PYCQVDLYETRLSSENALDILAPYDVVVDGTDNFPTRYLVNDAC 149 (390)
T ss_pred CCCeEEEEecccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 1111 011111 23567899999999988777666776643
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.54 E-value=3.6 Score=39.44 Aligned_cols=71 Identities=15% Similarity=0.124 Sum_probs=44.9
Q ss_pred cCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCH---HhhcC-------
Q 014834 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI---YETIS------- 177 (417)
Q Consensus 109 ~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~---~Ea~~------- 177 (417)
++ ++|.|.|. |-+|.++++.|.+. |++|++..|+.++ .+...+.++......+.+. +++++
T Consensus 2 ~~-k~vlItGasggiG~~la~~l~~~------G~~V~~~~r~~~~-l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~ 73 (273)
T PRK06182 2 QK-KVALVTGASSGIGKATARRLAAQ------GYTVYGAARRVDK-MEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEG 73 (273)
T ss_pred CC-CEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCHHH-HHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 45 89999996 79999999999998 9998877776443 2222233432211112232 23333
Q ss_pred cCCEEEEccC
Q 014834 178 GSDLVLLLIS 187 (417)
Q Consensus 178 ~ADIViLavp 187 (417)
..|+||.+..
T Consensus 74 ~id~li~~ag 83 (273)
T PRK06182 74 RIDVLVNNAG 83 (273)
T ss_pred CCCEEEECCC
Confidence 5799998754
|
|
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=88.43 E-value=1.6 Score=45.60 Aligned_cols=67 Identities=28% Similarity=0.307 Sum_probs=44.5
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhH----HHHHHcCceecCCCcCCH---HhhcCcCCEEEEc
Q 014834 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF----AEARAAGFTEENGTLGDI---YETISGSDLVLLL 185 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~----~~A~~~G~~~~~~~~~s~---~Ea~~~ADIViLa 185 (417)
||.|||+|..|.+.|+.|.+. |+.|.+.++...... ..-++.|+...-+...+. .+...+.|+|+..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~------G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s 75 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQ------GWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVS 75 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHC------CCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEEC
Confidence 799999999999999999999 999987776533212 123355765421111111 1356789999884
|
|
| >PLN02514 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=88.38 E-value=4 Score=41.21 Aligned_cols=93 Identities=16% Similarity=0.153 Sum_probs=57.3
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec-CCC-cCCHHhhcCcCCEEEEcc
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGT-LGDIYETISGSDLVLLLI 186 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~-~~~-~~s~~Ea~~~ADIViLav 186 (417)
.| .++.|+|.|.+|...++-++.. |.+|++..+.+++....+++.|.... +.. ...+.+.....|+|+-++
T Consensus 180 ~g-~~vlV~G~G~vG~~av~~Ak~~------G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~ 252 (357)
T PLN02514 180 SG-LRGGILGLGGVGHMGVKIAKAM------GHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTV 252 (357)
T ss_pred CC-CeEEEEcccHHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECC
Confidence 57 8999999999999999998888 88877666554444444455776420 000 001222334579999888
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 187 SDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
.... .++.....++++..++..
T Consensus 253 g~~~---~~~~~~~~l~~~G~iv~~ 274 (357)
T PLN02514 253 PVFH---PLEPYLSLLKLDGKLILM 274 (357)
T ss_pred CchH---HHHHHHHHhccCCEEEEE
Confidence 7432 333344556666655543
|
|
| >PRK09414 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.30 E-value=1.9 Score=45.90 Aligned_cols=34 Identities=21% Similarity=0.265 Sum_probs=30.1
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEE
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVG 146 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg 146 (417)
..++| ++|+|.|+|+.|...|+.|.+. |..|+..
T Consensus 228 ~~l~g-~rVaIqGfGnVG~~~A~~L~~~------GakVVav 261 (445)
T PRK09414 228 DSFEG-KRVVVSGSGNVAIYAIEKAQQL------GAKVVTC 261 (445)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEE
Confidence 46889 9999999999999999999988 9877654
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=88.26 E-value=2.2 Score=41.33 Aligned_cols=90 Identities=18% Similarity=0.135 Sum_probs=54.3
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH----cCceecCCCcCCHHhhcCcCCEEEE
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~----~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
.| ++|.-||+|+ | .++..+... |..-+++.+.++...+.|++ .++.. .....+.-...|+|+.
T Consensus 119 ~~-~~VLDiGcGs-G-~l~i~~~~~------g~~~v~giDis~~~l~~A~~n~~~~~~~~----~~~~~~~~~~fD~Vva 185 (250)
T PRK00517 119 PG-KTVLDVGCGS-G-ILAIAAAKL------GAKKVLAVDIDPQAVEAARENAELNGVEL----NVYLPQGDLKADVIVA 185 (250)
T ss_pred CC-CEEEEeCCcH-H-HHHHHHHHc------CCCeEEEEECCHHHHHHHHHHHHHcCCCc----eEEEccCCCCcCEEEE
Confidence 56 8999999999 5 344445555 55424566655555555544 33310 0001010014799887
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
-+.......+++++...|+||..++++
T Consensus 186 ni~~~~~~~l~~~~~~~LkpgG~lils 212 (250)
T PRK00517 186 NILANPLLELAPDLARLLKPGGRLILS 212 (250)
T ss_pred cCcHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 665555667888899999999887754
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=88.21 E-value=2.9 Score=44.11 Aligned_cols=94 Identities=13% Similarity=0.045 Sum_probs=63.1
Q ss_pred hccCCCEEEEEcc----------cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhc
Q 014834 107 AFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI 176 (417)
Q Consensus 107 ~l~gmkkIgIIG~----------G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~ 176 (417)
.++| +||+|+|+ .+-+..++..|++. |.+|.+++..-.. ....+..|... + + ..++
T Consensus 311 ~~~~-~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~------g~~V~~~DP~v~~-~~~~~~~~~~~----~-~-~~~~ 376 (425)
T PRK15182 311 NVEG-SSVLILGFTFKENCPDIRNTRIIDVVKELGKY------SCKVDIFDPWVDA-EEVRREYGIIP----V-S-EVKS 376 (425)
T ss_pred CCCC-CEEEEEEeEeCCCCCccccCcHHHHHHHHHhC------CCEEEEECCCCCh-hHHHHhcCccc----c-h-hhhh
Confidence 4788 99999999 57788899999988 9999877643111 11122344321 1 1 2357
Q ss_pred CcCCEEEEccCCchHHHH-HHHHHhcCCCCcEEEEecCc
Q 014834 177 SGSDLVLLLISDAAQADN-YEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 177 ~~ADIViLavpd~~~~~V-l~eI~~~lk~gaiLi~a~G~ 214 (417)
++||+|++++.-....++ ++.+...++...+|++.-++
T Consensus 377 ~~ad~vvi~t~h~~f~~~~~~~~~~~~~~~~~iiD~r~~ 415 (425)
T PRK15182 377 SHYDAIIVAVGHQQFKQMGSEDIRGFGKDKHVLYDLKYV 415 (425)
T ss_pred cCCCEEEEccCCHHhhcCCHHHHHHhcCCCCEEEECCCC
Confidence 789999999998777643 55666666644577775554
|
|
| >COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.19 E-value=1.4 Score=46.51 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=32.7
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCh
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s 151 (417)
.|+| ++|+|=|+||.|.-.|+.|.+. |.+|++..++..
T Consensus 204 ~l~G-~rVaVQG~GNVg~~aa~~l~~~------GAkvva~sds~g 241 (411)
T COG0334 204 DLEG-ARVAVQGFGNVGQYAAEKLHEL------GAKVVAVSDSKG 241 (411)
T ss_pred CcCC-CEEEEECccHHHHHHHHHHHHc------CCEEEEEEcCCC
Confidence 3899 9999999999999999999988 988876665533
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.11 E-value=1.8 Score=40.70 Aligned_cols=37 Identities=22% Similarity=0.217 Sum_probs=31.7
Q ss_pred ccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCh
Q 014834 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (417)
Q Consensus 108 l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s 151 (417)
++| ++|-|.|. |.+|.++++.|.+. |.+|++..|..+
T Consensus 5 ~~~-~~vlItGasg~iG~~la~~l~~~------G~~v~~~~r~~~ 42 (262)
T PRK13394 5 LNG-KTAVVTGAASGIGKEIALELARA------GAAVAIADLNQD 42 (262)
T ss_pred CCC-CEEEEECCCChHHHHHHHHHHHC------CCeEEEEeCChH
Confidence 567 89999997 89999999999998 999887777643
|
|
| >TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family | Back alignment and domain information |
|---|
Probab=88.04 E-value=1.1 Score=40.56 Aligned_cols=77 Identities=19% Similarity=0.182 Sum_probs=49.1
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCH---HhhcCcCCEEEEccCCc
Q 014834 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI---YETISGSDLVLLLISDA 189 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~---~Ea~~~ADIViLavpd~ 189 (417)
++.|+|.|..|..++..|++. |++++-+.+.+.... ...-.|+.. +.+. .+..++.+.+++++++.
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~------g~~vvgfid~~~~~~-~~~i~g~pv----lg~~~~l~~~~~~~~~~iiai~~~ 69 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDS------GWEIVGFLDDNPALQ-GTSVDGLPV----LGGDEDLLRYPPDEVDLVVAIGDN 69 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhC------CCEEEEEEcCCcccc-CcccCCccE----ECCHHHHhhhcccccEEEEEcCCH
Confidence 478999999999999999988 998865555432211 112246553 3333 33444568899999754
Q ss_pred hH-HHHHHHHHh
Q 014834 190 AQ-ADNYEKIFS 200 (417)
Q Consensus 190 ~~-~~Vl~eI~~ 200 (417)
.. .++++.+.+
T Consensus 70 ~~~~~i~~~l~~ 81 (201)
T TIGR03570 70 KLRRRLFEKLKA 81 (201)
T ss_pred HHHHHHHHHHHh
Confidence 44 456555543
|
These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. |
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.83 E-value=5 Score=36.89 Aligned_cols=86 Identities=15% Similarity=0.074 Sum_probs=51.3
Q ss_pred ccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 108 l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
++| ++|-|+|. |.+|.++++.|.+. |.+|++..|+..+..+...+. . ....+++..-+
T Consensus 5 ~~~-k~vlItGatg~iG~~la~~l~~~------G~~v~~~~r~~~~~~~~~~~~--~------------~~~~~~~~~D~ 63 (239)
T PRK12828 5 LQG-KVVAITGGFGGLGRATAAWLAAR------GARVALIGRGAAPLSQTLPGV--P------------ADALRIGGIDL 63 (239)
T ss_pred CCC-CEEEEECCCCcHhHHHHHHHHHC------CCeEEEEeCChHhHHHHHHHH--h------------hcCceEEEeec
Confidence 567 99999995 89999999999998 999887777543322222111 0 01123333333
Q ss_pred CCc-hHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 187 SDA-AQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 187 pd~-~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
.+. ...++++++.....+=.+|++.+|.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 92 (239)
T PRK12828 64 VDPQAARRAVDEVNRQFGRLDALVNIAGA 92 (239)
T ss_pred CCHHHHHHHHHHHHHHhCCcCEEEECCcc
Confidence 333 3345666666544333456666664
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=87.72 E-value=8 Score=31.90 Aligned_cols=94 Identities=17% Similarity=0.196 Sum_probs=53.1
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHH----HcCceecCCCcCC----HHhhcCcCC
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----AAGFTEENGTLGD----IYETISGSD 180 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~----~~G~~~~~~~~~s----~~Ea~~~AD 180 (417)
.+ ++|.=||+|.=.. +..+.+.. .+.+| ++.+.+....+.++ ..+.....-...+ ........|
T Consensus 19 ~~-~~vldlG~G~G~~--~~~l~~~~----~~~~v-~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 90 (124)
T TIGR02469 19 PG-DVLWDIGAGSGSI--TIEAARLV----PNGRV-YAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPD 90 (124)
T ss_pred CC-CEEEEeCCCCCHH--HHHHHHHC----CCceE-EEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCC
Confidence 35 7899999998333 33333320 02355 45554444344433 2332100000112 112335789
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEE
Q 014834 181 LVLLLISDAAQADNYEKIFSCMKPNSILGL 210 (417)
Q Consensus 181 IViLavpd~~~~~Vl~eI~~~lk~gaiLi~ 210 (417)
+|++.-++....++++++.+.|+||..+++
T Consensus 91 ~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~ 120 (124)
T TIGR02469 91 RVFIGGSGGLLQEILEAIWRRLRPGGRIVL 120 (124)
T ss_pred EEEECCcchhHHHHHHHHHHHcCCCCEEEE
Confidence 999987777777899999999999987653
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=87.71 E-value=0.72 Score=44.61 Aligned_cols=66 Identities=18% Similarity=0.089 Sum_probs=44.0
Q ss_pred EEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCC---HHhhc------Cc-CCE
Q 014834 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETI------SG-SDL 181 (417)
Q Consensus 113 kIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s---~~Ea~------~~-ADI 181 (417)
+|.|+|. |.+|..+++.|.+. |++|.+..|+.++.. ..|+........+ +.+++ +. +|.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~------g~~V~~~~R~~~~~~----~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~ 70 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAA------SVPFLVASRSSSSSA----GPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISA 70 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhC------CCcEEEEeCCCcccc----CCCCccccccCCCHHHHHHHHhcccCcCCceeE
Confidence 4789997 99999999999998 999988888654321 1222211111222 34455 45 899
Q ss_pred EEEccCC
Q 014834 182 VLLLISD 188 (417)
Q Consensus 182 ViLavpd 188 (417)
|+++.|+
T Consensus 71 v~~~~~~ 77 (285)
T TIGR03649 71 VYLVAPP 77 (285)
T ss_pred EEEeCCC
Confidence 9988875
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.69 E-value=2.4 Score=39.50 Aligned_cols=38 Identities=26% Similarity=0.302 Sum_probs=32.1
Q ss_pred ccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChh
Q 014834 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR 152 (417)
Q Consensus 108 l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~ 152 (417)
++| +++.|.|. |.+|..+++.|.+. |++|++..|+.++
T Consensus 7 ~~~-~~~lItGa~g~iG~~~a~~l~~~------g~~V~~~~r~~~~ 45 (245)
T PRK07060 7 FSG-KSVLVTGASSGIGRACAVALAQR------GARVVAAARNAAA 45 (245)
T ss_pred cCC-CEEEEeCCcchHHHHHHHHHHHC------CCEEEEEeCCHHH
Confidence 677 89999998 79999999999998 9998877775433
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=87.67 E-value=2.2 Score=40.08 Aligned_cols=36 Identities=19% Similarity=0.233 Sum_probs=30.5
Q ss_pred ccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 014834 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (417)
Q Consensus 108 l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~ 150 (417)
++| |+|-|.|. |.+|.++|+.|.+. |++|++..|+.
T Consensus 2 ~~~-k~vlItGas~giG~~~a~~l~~~------g~~v~~~~r~~ 38 (256)
T PRK09186 2 LKG-KTILITGAGGLIGSALVKAILEA------GGIVIAADIDK 38 (256)
T ss_pred CCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEecCh
Confidence 467 89999996 69999999999998 99887776653
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=87.66 E-value=2.5 Score=40.31 Aligned_cols=86 Identities=16% Similarity=0.148 Sum_probs=51.4
Q ss_pred ccCCCEEEEEccc---chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 108 FNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 108 l~gmkkIgIIG~G---~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
++| |++-|.|.+ -+|.++|+.|.+. |.+|++..|+ .+..+...+. . ..... .-.+|+
T Consensus 5 l~~-k~~lItGas~~~gIG~a~a~~la~~------G~~Vi~~~r~-~~~~~~~~~~--~------~~~~~-~~~~Dl--- 64 (252)
T PRK06079 5 LSG-KKIVVMGVANKRSIAWGCAQAIKDQ------GATVIYTYQN-DRMKKSLQKL--V------DEEDL-LVECDV--- 64 (252)
T ss_pred cCC-CEEEEeCCCCCCchHHHHHHHHHHC------CCEEEEecCc-hHHHHHHHhh--c------cCcee-EEeCCC---
Confidence 677 999999986 7999999999998 9998877664 2222221111 0 00000 112332
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
+.+....++++++.....+=.+|+..+|+
T Consensus 65 -~~~~~v~~~~~~~~~~~g~iD~lv~nAg~ 93 (252)
T PRK06079 65 -ASDESIERAFATIKERVGKIDGIVHAIAY 93 (252)
T ss_pred -CCHHHHHHHHHHHHHHhCCCCEEEEcccc
Confidence 33444566777766544332367777776
|
|
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=87.61 E-value=2.3 Score=47.93 Aligned_cols=110 Identities=17% Similarity=0.197 Sum_probs=68.2
Q ss_pred cchHhhhhhcccchhhhcccccccc------cchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecC
Q 014834 78 VFKKDAISLANRDEFIVRGGRDLFK------LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRK 149 (417)
Q Consensus 78 ~~~~~~~~~~~~~e~~vr~g~~~f~------~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~ 149 (417)
+|+...+.+-+.+|+.-. |+... .+++.|+. .+|+|||+| .|..+|..|..+ |+ ++++.+..
T Consensus 71 pw~~~~v~~~~~~~~~~~--r~~Rn~~~ig~~~Q~~L~~-~~V~IvG~G-lGs~~a~~Lara------GvvG~l~lvD~D 140 (722)
T PRK07877 71 PWRRTVVHLLGPREFRAV--RLDRNRNKITAEEQERLGR-LRIGVVGLS-VGHAIAHTLAAE------GLCGELRLADFD 140 (722)
T ss_pred cchhheeecCCHHHhhHH--HhhchhhhCCHHHHHHHhc-CCEEEEEec-HHHHHHHHHHHc------cCCCeEEEEcCC
Confidence 688888888888886411 23222 24788888 999999999 899999999988 64 44443321
Q ss_pred -----------------C-hhhHHHHHH---c--Ccee--cCCCc--CCHHhhcCcCCEEEEccCCchHHHHHHH
Q 014834 150 -----------------G-SRSFAEARA---A--GFTE--ENGTL--GDIYETISGSDLVLLLISDAAQADNYEK 197 (417)
Q Consensus 150 -----------------~-s~s~~~A~~---~--G~~~--~~~~~--~s~~Ea~~~ADIViLavpd~~~~~Vl~e 197 (417)
+ .|....++. . .+.+ .+..+ .+.++.++++|+|+-|+-+-...-++.+
T Consensus 141 ~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~ 215 (722)
T PRK07877 141 TLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLRE 215 (722)
T ss_pred EEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHH
Confidence 0 011111111 0 1111 01111 2466788999999999988766666654
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.58 E-value=2 Score=40.56 Aligned_cols=37 Identities=24% Similarity=0.212 Sum_probs=31.8
Q ss_pred hccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 014834 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (417)
Q Consensus 107 ~l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~ 150 (417)
.|+| |+|.|.|. |.+|.++++.|.+. |++|++..|+.
T Consensus 7 ~~~~-k~vlItGa~g~iG~~ia~~l~~~------G~~V~~~~r~~ 44 (255)
T PRK07523 7 DLTG-RRALVTGSSQGIGYALAEGLAQA------GAEVILNGRDP 44 (255)
T ss_pred CCCC-CEEEEECCcchHHHHHHHHHHHc------CCEEEEEeCCH
Confidence 3678 99999995 89999999999998 99988777653
|
|
| >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=87.56 E-value=4.5 Score=41.91 Aligned_cols=69 Identities=17% Similarity=0.258 Sum_probs=53.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCH----------HhhcC-cCC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI----------YETIS-GSD 180 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~----------~Ea~~-~AD 180 (417)
.+++|+|+|-+|.|-.++++.. |-..+|+.+.+....+.|++.|.+. +.+. .++.. .+|
T Consensus 187 ~tvaV~GlGgVGlaaI~gA~~a------gA~~IiAvD~~~~Kl~~A~~fGAT~----~vn~~~~~~vv~~i~~~T~gG~d 256 (366)
T COG1062 187 DTVAVFGLGGVGLAAIQGAKAA------GAGRIIAVDINPEKLELAKKFGATH----FVNPKEVDDVVEAIVELTDGGAD 256 (366)
T ss_pred CeEEEEeccHhHHHHHHHHHHc------CCceEEEEeCCHHHHHHHHhcCCce----eecchhhhhHHHHHHHhcCCCCC
Confidence 6899999999999999999998 8766777777777789999999864 2222 23334 688
Q ss_pred EEEEccCCch
Q 014834 181 LVLLLISDAA 190 (417)
Q Consensus 181 IViLavpd~~ 190 (417)
..|-++-...
T Consensus 257 ~~~e~~G~~~ 266 (366)
T COG1062 257 YAFECVGNVE 266 (366)
T ss_pred EEEEccCCHH
Confidence 8888877644
|
|
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=87.47 E-value=3.4 Score=41.35 Aligned_cols=47 Identities=19% Similarity=0.169 Sum_probs=37.2
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCce
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~ 163 (417)
.| .+|.|+|.|.+|...++-++.. |.+|++..+. +...+.+++.|+.
T Consensus 166 ~g-~~VlV~G~G~vG~~a~~~a~~~------G~~vi~~~~~-~~~~~~~~~~Ga~ 212 (349)
T TIGR03201 166 KG-DLVIVIGAGGVGGYMVQTAKAM------GAAVVAIDID-PEKLEMMKGFGAD 212 (349)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEEcCC-HHHHHHHHHhCCc
Confidence 46 8999999999999999999988 8887665554 3456777778863
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=87.35 E-value=4.5 Score=42.26 Aligned_cols=121 Identities=17% Similarity=0.223 Sum_probs=66.2
Q ss_pred hhhhhcccchhhhcccccccccchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHc
Q 014834 82 DAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA 160 (417)
Q Consensus 82 ~~~~~~~~~e~~vr~g~~~f~~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~ 160 (417)
-.++|...+|.++-..= =..........++|.+||+| .|.+....|+.. +. +|. ....++.-.+.|++.
T Consensus 124 G~~Q~se~DE~iYHE~L--vhp~m~~h~~PkrVLIIGgG-dG~tlrelLk~~------~v~~It-~VEIDpeVIelAr~~ 193 (374)
T PRK01581 124 KQLQFSSVDEQIYHEAL--VHPIMSKVIDPKRVLILGGG-DGLALREVLKYE------TVLHVD-LVDLDGSMINMARNV 193 (374)
T ss_pred CeeccccccHHHHHHHH--HHHHHHhCCCCCEEEEECCC-HHHHHHHHHhcC------CCCeEE-EEeCCHHHHHHHHhc
Confidence 34456666676533100 00011223334899999998 455555555443 33 444 444556667777752
Q ss_pred ---------CceecCC---CcCCHHhhc----CcCCEEEEccCCchH--------HHHHHHHHhcCCCCcEEEEecC
Q 014834 161 ---------GFTEENG---TLGDIYETI----SGSDLVLLLISDAAQ--------ADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 161 ---------G~~~~~~---~~~s~~Ea~----~~ADIViLavpd~~~--------~~Vl~eI~~~lk~gaiLi~a~G 213 (417)
++.. .+ ...|..+.+ ..-|+||+=.||... .+.++.+...|+||-+++.-++
T Consensus 194 ~~L~~~~~~~~~D-pRV~vvi~Da~~fL~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 194 PELVSLNKSAFFD-NRVNVHVCDAKEFLSSPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred cccchhccccCCC-CceEEEECcHHHHHHhcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 1100 00 013333322 346999999876421 4577788999999998765544
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.33 E-value=2.4 Score=41.56 Aligned_cols=48 Identities=17% Similarity=0.024 Sum_probs=37.5
Q ss_pred ccccccccchhhccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCh
Q 014834 96 GGRDLFKLLPDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (417)
Q Consensus 96 ~g~~~f~~~~~~l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s 151 (417)
-+.|..... ..++| |+|-|.|. |-+|.++++.|.+. |.+|++..|+.+
T Consensus 3 ~~~~~~~~~-~~~~~-k~vlItGas~gIG~~~a~~l~~~------G~~vi~~~r~~~ 51 (306)
T PRK06197 3 MTKWTAADI-PDQSG-RVAVVTGANTGLGYETAAALAAK------GAHVVLAVRNLD 51 (306)
T ss_pred CCCCCcccc-ccCCC-CEEEEcCCCCcHHHHHHHHHHHC------CCEEEEEeCCHH
Confidence 345655433 56889 99999995 79999999999998 999887777533
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=87.31 E-value=2.9 Score=39.76 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=30.5
Q ss_pred ccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 014834 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (417)
Q Consensus 108 l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~ 150 (417)
++| +++-|+|. |-+|.++++.|.+. |.+|++..|..
T Consensus 3 ~~~-k~vlItGas~gIG~~ia~~l~~~------G~~V~~~~r~~ 39 (262)
T TIGR03325 3 LKG-EVVLVTGGASGLGRAIVDRFVAE------GARVAVLDKSA 39 (262)
T ss_pred cCC-cEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 567 89999996 57999999999999 99988777654
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.26 E-value=4.3 Score=40.42 Aligned_cols=46 Identities=22% Similarity=0.159 Sum_probs=34.9
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEE-EEEecCChhhHHHHHHcCc
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV-KVGLRKGSRSFAEARAAGF 162 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~V-iVg~r~~s~s~~~A~~~G~ 162 (417)
.| ++|.|.|.|.+|...++-++.. |.++ ++..+. ....+.+++.|.
T Consensus 160 ~g-~~vlV~G~g~vG~~~~~~a~~~------G~~~v~~~~~~-~~~~~~~~~~Ga 206 (347)
T PRK10309 160 EG-KNVIIIGAGTIGLLAIQCAVAL------GAKSVTAIDIN-SEKLALAKSLGA 206 (347)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEECCC-HHHHHHHHHcCC
Confidence 56 8999999999999999999888 8864 444444 344566777775
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.22 E-value=1.8 Score=40.87 Aligned_cols=36 Identities=17% Similarity=0.188 Sum_probs=31.2
Q ss_pred ccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 014834 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (417)
Q Consensus 108 l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~ 150 (417)
++| |++-|.|. |-+|.++++.|.+. |.+|++..|+.
T Consensus 7 ~~~-k~vlVtGas~gIG~~ia~~l~~~------G~~V~~~~r~~ 43 (253)
T PRK05867 7 LHG-KRALITGASTGIGKRVALAYVEA------GAQVAIAARHL 43 (253)
T ss_pred CCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEcCCH
Confidence 678 99999997 68999999999998 99988777653
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=87.20 E-value=1.2 Score=48.85 Aligned_cols=75 Identities=20% Similarity=0.274 Sum_probs=49.1
Q ss_pred hhccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH--------cC------ceecCCCcC
Q 014834 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--------AG------FTEENGTLG 170 (417)
Q Consensus 106 ~~l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~--------~G------~~~~~~~~~ 170 (417)
+-.+| ++|.|.|. |.+|.++++.|.+. |++|++..|+..+....+.+ .| +....+.+.
T Consensus 76 ~~~~g-KvVLVTGATGgIG~aLAr~LLk~------G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLt 148 (576)
T PLN03209 76 DTKDE-DLAFVAGATGKVGSRTVRELLKL------GFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLE 148 (576)
T ss_pred ccCCC-CEEEEECCCCHHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCC
Confidence 44566 89999996 89999999999998 99998887765443222211 11 111011233
Q ss_pred C---HHhhcCcCCEEEEccC
Q 014834 171 D---IYETISGSDLVLLLIS 187 (417)
Q Consensus 171 s---~~Ea~~~ADIViLavp 187 (417)
+ +.+++.++|+||.+.-
T Consensus 149 D~esI~~aLggiDiVVn~AG 168 (576)
T PLN03209 149 KPDQIGPALGNASVVICCIG 168 (576)
T ss_pred CHHHHHHHhcCCCEEEEccc
Confidence 3 3456788999998864
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.97 E-value=3.6 Score=38.47 Aligned_cols=36 Identities=25% Similarity=0.200 Sum_probs=30.9
Q ss_pred ccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 014834 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (417)
Q Consensus 108 l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~ 150 (417)
|+| ++|-|+|. |.+|..+++.|.+. |.+|++..|+.
T Consensus 3 ~~~-k~~lItG~sg~iG~~la~~l~~~------G~~v~~~~r~~ 39 (252)
T PRK06138 3 LAG-RVAIVTGAGSGIGRATAKLFARE------GARVVVADRDA 39 (252)
T ss_pred CCC-cEEEEeCCCchHHHHHHHHHHHC------CCeEEEecCCH
Confidence 567 89999996 79999999999998 99887777654
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=86.79 E-value=2.4 Score=42.65 Aligned_cols=76 Identities=20% Similarity=0.155 Sum_probs=48.8
Q ss_pred hhccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHH-HHH--c---CceecCCCcC---CHHhh
Q 014834 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-ARA--A---GFTEENGTLG---DIYET 175 (417)
Q Consensus 106 ~~l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~-A~~--~---G~~~~~~~~~---s~~Ea 175 (417)
..+++ ++|.|.|. |-+|..+++.|.+. |++|++..|..+..... ... . .+......+. +..++
T Consensus 6 ~~~~~-~~vlVTGatGfIG~~l~~~L~~~------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 78 (342)
T PLN02214 6 ASPAG-KTVCVTGAGGYIASWIVKILLER------GYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAA 78 (342)
T ss_pred ccCCC-CEEEEECCCcHHHHHHHHHHHHC------cCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHH
Confidence 44667 89999997 99999999999999 99987766653321111 011 1 1111011122 34567
Q ss_pred cCcCCEEEEccCC
Q 014834 176 ISGSDLVLLLISD 188 (417)
Q Consensus 176 ~~~ADIViLavpd 188 (417)
++.+|+||-+..+
T Consensus 79 ~~~~d~Vih~A~~ 91 (342)
T PLN02214 79 IDGCDGVFHTASP 91 (342)
T ss_pred HhcCCEEEEecCC
Confidence 8889999988653
|
|
| >TIGR03855 NAD_NadX aspartate dehydrogenase | Back alignment and domain information |
|---|
Probab=86.61 E-value=2.3 Score=41.34 Aligned_cols=64 Identities=25% Similarity=0.207 Sum_probs=45.8
Q ss_pred EEEecCChhhHHHHHHcCceecCCCcCCHHhhc-CcCCEEEEccCCchHHHHHHHHHhcCCCCc-EEEEecCc
Q 014834 144 KVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAAQADNYEKIFSCMKPNS-ILGLSHGF 214 (417)
Q Consensus 144 iVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~-~~ADIViLavpd~~~~~Vl~eI~~~lk~ga-iLi~a~G~ 214 (417)
.|+++..++..+.+.+.|+.. +.+++|++ .+.|+|++|+|+..+.++..++.. .|+ +++.+.|.
T Consensus 6 aV~D~~~e~a~~~a~~~g~~~----~~d~~eLl~~~vDaVviatp~~~H~e~a~~aL~---aGkhVl~~s~gA 71 (229)
T TIGR03855 6 AVYDRNPKDAKELAERCGAKI----VSDFDEFLPEDVDIVVEAASQEAVKEYAEKILK---NGKDLLIMSVGA 71 (229)
T ss_pred EEECCCHHHHHHHHHHhCCce----ECCHHHHhcCCCCEEEECCChHHHHHHHHHHHH---CCCCEEEECCcc
Confidence 445555556666777788654 67888875 679999999999999888876544 454 55666553
|
Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur. |
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=86.61 E-value=3.4 Score=38.51 Aligned_cols=36 Identities=22% Similarity=0.191 Sum_probs=31.2
Q ss_pred ccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 014834 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (417)
Q Consensus 108 l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~ 150 (417)
+++ ++|.|+|. |.+|.++++.|.+. |++|++..|+.
T Consensus 3 ~~~-~~vlItGasg~iG~~l~~~l~~~------G~~V~~~~r~~ 39 (251)
T PRK07231 3 LEG-KVAIVTGASSGIGEGIARRFAAE------GARVVVTDRNE 39 (251)
T ss_pred cCC-cEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 567 89999995 79999999999998 99988777764
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=86.57 E-value=2.3 Score=41.52 Aligned_cols=72 Identities=19% Similarity=0.179 Sum_probs=45.8
Q ss_pred cCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhH--HHHHH-c----CceecCCCc---CCHHhhcC
Q 014834 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF--AEARA-A----GFTEENGTL---GDIYETIS 177 (417)
Q Consensus 109 ~gmkkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~--~~A~~-~----G~~~~~~~~---~s~~Ea~~ 177 (417)
+| ++|.|.| .|-+|..+++.|.+. |++|++..|+..... ..... . .+....+.+ ....++++
T Consensus 3 ~~-~~ilVtGatGfIG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 75 (322)
T PLN02662 3 EG-KVVCVTGASGYIASWLVKLLLQR------GYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVD 75 (322)
T ss_pred CC-CEEEEECChHHHHHHHHHHHHHC------CCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHc
Confidence 35 8999999 699999999999999 999877666533211 11111 1 111101112 23556788
Q ss_pred cCCEEEEccC
Q 014834 178 GSDLVLLLIS 187 (417)
Q Consensus 178 ~ADIViLavp 187 (417)
++|+||.+..
T Consensus 76 ~~d~Vih~A~ 85 (322)
T PLN02662 76 GCEGVFHTAS 85 (322)
T ss_pred CCCEEEEeCC
Confidence 8999988764
|
|
| >PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=86.57 E-value=4.4 Score=44.14 Aligned_cols=66 Identities=17% Similarity=0.195 Sum_probs=46.9
Q ss_pred hccCCCEEEEEcc---cchHHHHHHHHHhhhhhhcCC-cEEEEEecCC----hhhHHHHHHcCceecCCCcCCHHhhcCc
Q 014834 107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISG 178 (417)
Q Consensus 107 ~l~gmkkIgIIG~---G~mG~AiA~~Lr~s~~~~~~G-~~ViVg~r~~----s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ 178 (417)
.++| .||++||- +++..+++..+... | ++|.+..... ....+.+++.|.... .+.+++|++++
T Consensus 171 ~l~g-lkVa~vGD~~~~rva~Sl~~~l~~~------g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~--i~~d~~eav~~ 241 (525)
T PRK13376 171 DNSF-IHIALVGDLLHGRTVHSKVNGLKIF------KNVKVDLIAPEELAMPEHYVEKMKKNGFEVR--IFSSIEEYLSQ 241 (525)
T ss_pred CcCC-CEEEEECCCCCCcHHHHHHHHHHhc------CCcEEEEECCccccCCHHHHHHHHHcCCeEE--EEcCHHHHhcc
Confidence 3677 89999998 58999999998877 7 7877654332 122355666664320 15789999999
Q ss_pred CCE
Q 014834 179 SDL 181 (417)
Q Consensus 179 ADI 181 (417)
||+
T Consensus 242 AD~ 244 (525)
T PRK13376 242 KDV 244 (525)
T ss_pred CCc
Confidence 995
|
|
| >PRK04523 N-acetylornithine carbamoyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=86.53 E-value=2.7 Score=43.17 Aligned_cols=70 Identities=14% Similarity=0.003 Sum_probs=46.1
Q ss_pred c-cCCCEEEEEccc-------chHHHHHHHHHhhhhhhcCCcEEEEEec-CC----hhhHHH----HHHcCceecCCCcC
Q 014834 108 F-NGINQIGVIGWG-------SQGPAQAQNLRDSLAEAKSDIVVKVGLR-KG----SRSFAE----ARAAGFTEENGTLG 170 (417)
Q Consensus 108 l-~gmkkIgIIG~G-------~mG~AiA~~Lr~s~~~~~~G~~ViVg~r-~~----s~s~~~----A~~~G~~~~~~~~~ 170 (417)
+ +| .||+|++.| ++..+++..+... |++|.+... +. ..-.+. +.+.|.... ...
T Consensus 166 ~~~g-~ki~i~~~gd~~~~~~~v~~S~~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~ 236 (335)
T PRK04523 166 TLRG-KKYVLTWTYHPKPLNTAVANSALLIATRL------GMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLT--VSH 236 (335)
T ss_pred ccCC-CEEEEEEeccCcccccHHHHHHHHHHHHc------CCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEE--EEc
Confidence 5 68 899776543 6788888877776 998877765 31 111222 344563220 156
Q ss_pred CHHhhcCcCCEEEEcc
Q 014834 171 DIYETISGSDLVLLLI 186 (417)
Q Consensus 171 s~~Ea~~~ADIViLav 186 (417)
+++|++++||+|..-.
T Consensus 237 d~~ea~~~aDvvy~~~ 252 (335)
T PRK04523 237 DIDSAYAGADVVYAKS 252 (335)
T ss_pred CHHHHhCCCCEEEece
Confidence 8999999999999854
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=86.53 E-value=5.7 Score=39.23 Aligned_cols=90 Identities=20% Similarity=0.154 Sum_probs=55.5
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcE-EEEEecCChhhHHHHHHcCceec-CCCcCCH---HhhcC--cCCE
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEE-NGTLGDI---YETIS--GSDL 181 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~-ViVg~r~~s~s~~~A~~~G~~~~-~~~~~s~---~Ea~~--~ADI 181 (417)
.| .+|.|+|.|.+|...++-++.. |.+ |++..+. +...+.+++.|+... +....+. .+... ..|+
T Consensus 163 ~g-~~vlV~G~G~vG~~~~~~ak~~------G~~~vi~~~~~-~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~ 234 (339)
T cd08239 163 GR-DTVLVVGAGPVGLGALMLARAL------GAEDVIGVDPS-PERLELAKALGADFVINSGQDDVQEIRELTSGAGADV 234 (339)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEECCC-HHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCE
Confidence 47 8999999999999999998888 887 7665444 445677788886320 1000011 12222 5799
Q ss_pred EEEccCCchHHHHHHHHHhcCCCCcEEE
Q 014834 182 VLLLISDAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 182 ViLavpd~~~~~Vl~eI~~~lk~gaiLi 209 (417)
||-++..... +......++++..++
T Consensus 235 vid~~g~~~~---~~~~~~~l~~~G~~v 259 (339)
T cd08239 235 AIECSGNTAA---RRLALEAVRPWGRLV 259 (339)
T ss_pred EEECCCCHHH---HHHHHHHhhcCCEEE
Confidence 9988876543 222233455555444
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=86.49 E-value=4.5 Score=40.06 Aligned_cols=92 Identities=21% Similarity=0.252 Sum_probs=56.9
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec-CCCcCC-HHhhcCcCCEEEEcc
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGD-IYETISGSDLVLLLI 186 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~-~~~~~s-~~Ea~~~ADIViLav 186 (417)
+| .+|.|.|.|.+|.+.++.++.. |.+|++..+.. ...+.+.+.|+... +..-.+ ..+.-...|+|+-++
T Consensus 169 ~g-~~vlV~g~g~vG~~~~~~a~~~------G~~v~~~~~~~-~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~ 240 (337)
T cd05283 169 PG-KRVGVVGIGGLGHLAVKFAKAL------GAEVTAFSRSP-SKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTV 240 (337)
T ss_pred CC-CEEEEECCcHHHHHHHHHHHHc------CCeEEEEcCCH-HHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECC
Confidence 46 7999999999999999988888 88876665553 34566667775320 000001 112235679999988
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 187 SDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
+... .+++....++++..++..
T Consensus 241 g~~~---~~~~~~~~l~~~G~~v~~ 262 (337)
T cd05283 241 SASH---DLDPYLSLLKPGGTLVLV 262 (337)
T ss_pred CCcc---hHHHHHHHhcCCCEEEEE
Confidence 8652 233444555555554433
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic |
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=86.37 E-value=2 Score=49.93 Aligned_cols=72 Identities=17% Similarity=0.067 Sum_probs=50.9
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCh--------------------hhHHHHHHcCceecC--
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEEN-- 166 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s--------------------~s~~~A~~~G~~~~~-- 166 (417)
+| |||+|||.|.-|.+-|..|.+. |++|+|+.+.+. +..+..++.|+...-
T Consensus 305 ~g-kkVaVIGsGPAGLsaA~~Lar~------G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~ 377 (944)
T PRK12779 305 VK-PPIAVVGSGPSGLINAYLLAVE------GFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNF 377 (944)
T ss_pred CC-CeEEEECCCHHHHHHHHHHHHC------CCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeE
Confidence 47 9999999999999999999999 999988865321 123445566765210
Q ss_pred --CCcCCHHhhcC-cCCEEEEccC
Q 014834 167 --GTLGDIYETIS-GSDLVLLLIS 187 (417)
Q Consensus 167 --~~~~s~~Ea~~-~ADIViLavp 187 (417)
+...+.+++.+ ..|.|||++-
T Consensus 378 ~vG~dit~~~l~~~~yDAV~LAtG 401 (944)
T PRK12779 378 VVGKTATLEDLKAAGFWKIFVGTG 401 (944)
T ss_pred EeccEEeHHHhccccCCEEEEeCC
Confidence 11124666655 6899999874
|
|
| >cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=86.33 E-value=4.7 Score=39.43 Aligned_cols=87 Identities=20% Similarity=0.190 Sum_probs=57.5
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHh-hcCcCCEEEEccC
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE-TISGSDLVLLLIS 187 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~E-a~~~ADIViLavp 187 (417)
+| .+|.|.|.|.+|.+.++.++.. |.+|++..+.. ...+.+++.|... ..+..+ .-+..|+++.+.+
T Consensus 167 ~~-~~vlV~g~g~vg~~~~~la~~~------g~~v~~~~~~~-~~~~~~~~~g~~~----~~~~~~~~~~~vD~vi~~~~ 234 (329)
T cd08298 167 PG-QRLGLYGFGASAHLALQIARYQ------GAEVFAFTRSG-EHQELARELGADW----AGDSDDLPPEPLDAAIIFAP 234 (329)
T ss_pred CC-CEEEEECCcHHHHHHHHHHHHC------CCeEEEEcCCh-HHHHHHHHhCCcE----EeccCccCCCcccEEEEcCC
Confidence 46 7999999999999999988888 88887665554 3456667777632 111111 2235788888765
Q ss_pred CchHHHHHHHHHhcCCCCcEEEE
Q 014834 188 DAAQADNYEKIFSCMKPNSILGL 210 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~gaiLi~ 210 (417)
.. ..++++...++++..++.
T Consensus 235 ~~---~~~~~~~~~l~~~G~~v~ 254 (329)
T cd08298 235 VG---ALVPAALRAVKKGGRVVL 254 (329)
T ss_pred cH---HHHHHHHHHhhcCCEEEE
Confidence 43 345556666766665553
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=86.26 E-value=6.7 Score=37.33 Aligned_cols=91 Identities=19% Similarity=0.159 Sum_probs=56.4
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcE-EEEEecCChhhHHHHHHcCceecCCCcCCHHhh--cCcCCEEEE
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGTLGDIYET--ISGSDLVLL 184 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~-ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea--~~~ADIViL 184 (417)
-+| .+|.|.|.|.+|.+.++..+.. |.+ |++..+. ....+.+++.|.. +......++. -...|+|+-
T Consensus 96 ~~g-~~vlI~g~g~vg~~~i~~a~~~------g~~~vi~~~~~-~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~d~vl~ 165 (277)
T cd08255 96 RLG-ERVAVVGLGLVGLLAAQLAKAA------GAREVVGVDPD-AARRELAEALGPA--DPVAADTADEIGGRGADVVIE 165 (277)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCCcEEEECCC-HHHHHHHHHcCCC--ccccccchhhhcCCCCCEEEE
Confidence 356 8999999999999999988887 887 6554444 3445677777721 1111111111 235899998
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
++.... .+.+....++++..++..
T Consensus 166 ~~~~~~---~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 166 ASGSPS---ALETALRLLRDRGRVVLV 189 (277)
T ss_pred ccCChH---HHHHHHHHhcCCcEEEEE
Confidence 876432 344445566666655543
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=86.22 E-value=2.3 Score=44.50 Aligned_cols=70 Identities=23% Similarity=0.289 Sum_probs=44.1
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhh-HHHHHHcCceecCCCcC-CHHhhcCcCCEEEEc
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEENGTLG-DIYETISGSDLVLLL 185 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s-~~~A~~~G~~~~~~~~~-s~~Ea~~~ADIViLa 185 (417)
++++++|.|||+|..|.+-+..|+.. +.|++|.+.+...... .+.. +.|+... .. ...+.+.++|+||..
T Consensus 4 ~~~~~~v~viG~G~sG~s~~~~l~~~----~~~~~v~~~D~~~~~~~~~~l-~~g~~~~---~g~~~~~~~~~~d~vV~S 75 (438)
T PRK04663 4 WQGIKNVVVVGLGITGLSVVKHLRKY----QPQLTVKVIDTRETPPGQEQL-PEDVELH---SGGWNLEWLLEADLVVTN 75 (438)
T ss_pred ccCCceEEEEeccHHHHHHHHHHHhc----CCCCeEEEEeCCCCchhHHHh-hcCCEEE---eCCCChHHhccCCEEEEC
Confidence 45568999999999999999988876 1126787766543221 1222 2376531 12 123446789988875
|
|
| >PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=86.22 E-value=1.4 Score=41.63 Aligned_cols=79 Identities=20% Similarity=0.066 Sum_probs=41.5
Q ss_pred EEEEEcccchHHHH-HHHHHhhhhhhcCCcEEEEEecCChhhH-------HHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 113 QIGVIGWGSQGPAQ-AQNLRDSLAEAKSDIVVKVGLRKGSRSF-------AEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 113 kIgIIG~G~mG~Ai-A~~Lr~s~~~~~~G~~ViVg~r~~s~s~-------~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
||+|||.|+.-.+. ...+....++. .+-++...+.+.++.. +..++.|....=..+.|.+|++++||+||.
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l-~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~ 79 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEEL-SGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEGADFVIN 79 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTS-TEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTESEEEE
T ss_pred CEEEECCchHhhHHHHHHHHhcCccC-CCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCCEEEE
Confidence 79999999987663 33233221111 0125555554433211 222334432111225789999999999999
Q ss_pred ccCCchHH
Q 014834 185 LISDAAQA 192 (417)
Q Consensus 185 avpd~~~~ 192 (417)
.+-..-..
T Consensus 80 ~irvGg~~ 87 (183)
T PF02056_consen 80 QIRVGGLE 87 (183)
T ss_dssp ---TTHHH
T ss_pred EeeecchH
Confidence 98876554
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A. |
| >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=86.11 E-value=2.8 Score=44.85 Aligned_cols=77 Identities=27% Similarity=0.296 Sum_probs=56.9
Q ss_pred chhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCh--------------------hhHHHHHHcCce
Q 014834 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFT 163 (417)
Q Consensus 104 ~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s--------------------~s~~~A~~~G~~ 163 (417)
.+....| ++|+|||.|.-|.+-|.-|... |++|+++.+... +..+.-++.|+.
T Consensus 117 ~~~~~tg-~~VaviGaGPAGl~~a~~L~~~------G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~ 189 (457)
T COG0493 117 LPGSRTG-KKVAVIGAGPAGLAAADDLSRA------GHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVE 189 (457)
T ss_pred CCCCCCC-CEEEEECCCchHhhhHHHHHhC------CCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeE
Confidence 4568888 9999999999999999999999 998887654321 234455556754
Q ss_pred ecC----CCcCCHHhhcCcCCEEEEccC
Q 014834 164 EEN----GTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 164 ~~~----~~~~s~~Ea~~~ADIViLavp 187 (417)
... |...+.+++.++-|.|++++.
T Consensus 190 ~~~~~~vG~~it~~~L~~e~Dav~l~~G 217 (457)
T COG0493 190 FKLNVRVGRDITLEELLKEYDAVFLATG 217 (457)
T ss_pred EEEcceECCcCCHHHHHHhhCEEEEecc
Confidence 321 113468899898999999875
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.11 E-value=3.9 Score=38.09 Aligned_cols=35 Identities=17% Similarity=0.198 Sum_probs=30.1
Q ss_pred ccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 014834 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 108 l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~ 149 (417)
++| ++|-|.|. |.+|.++++.|.+. |.+|++..|+
T Consensus 4 ~~~-k~vlItGasg~iG~~la~~l~~~------g~~v~~~~r~ 39 (249)
T PRK06500 4 LQG-KTALITGGTSGIGLETARQFLAE------GARVAITGRD 39 (249)
T ss_pred CCC-CEEEEeCCCchHHHHHHHHHHHC------CCEEEEecCC
Confidence 567 89999996 89999999999999 9988776665
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=85.96 E-value=4 Score=39.56 Aligned_cols=35 Identities=20% Similarity=0.223 Sum_probs=30.1
Q ss_pred ccCCCEEEEEccc---chHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 014834 108 FNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 108 l~gmkkIgIIG~G---~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~ 149 (417)
++| |++-|.|.+ -+|.++|+.|.+. |.+|++..|.
T Consensus 4 l~~-k~~lITGas~~~GIG~aia~~la~~------G~~vil~~r~ 41 (262)
T PRK07984 4 LSG-KRILVTGVASKLSIAYGIAQAMHRE------GAELAFTYQN 41 (262)
T ss_pred cCC-CEEEEeCCCCCccHHHHHHHHHHHC------CCEEEEEecc
Confidence 577 899999997 4999999999998 9998776664
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=85.96 E-value=7.2 Score=39.16 Aligned_cols=92 Identities=22% Similarity=0.257 Sum_probs=55.9
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcE-EEEEecCChhhHHHHHHcCceec-CCCcCCHH----hhc--CcCC
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEE-NGTLGDIY----ETI--SGSD 180 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~-ViVg~r~~s~s~~~A~~~G~~~~-~~~~~s~~----Ea~--~~AD 180 (417)
.| ++|.|+|.|.+|...++-++.. |.+ |++..+. ....+.+++.|.... +....+.. +.. ...|
T Consensus 176 ~g-~~VlV~G~g~vG~~a~~~ak~~------G~~~Vi~~~~~-~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d 247 (358)
T TIGR03451 176 RG-DSVAVIGCGGVGDAAIAGAALA------GASKIIAVDID-DRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGAD 247 (358)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEcCC-HHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCC
Confidence 46 8999999999999999988888 885 6544444 455777788886310 10011221 122 2478
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 181 IViLavpd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
+|+=++... +.++.....++++-.+++.
T Consensus 248 ~vid~~g~~---~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 248 VVIDAVGRP---ETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred EEEECCCCH---HHHHHHHHHhccCCEEEEE
Confidence 888887642 2233333455666555533
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.90 E-value=2.8 Score=49.41 Aligned_cols=82 Identities=22% Similarity=0.220 Sum_probs=60.7
Q ss_pred cccccchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCh--------------------hhHHHHH
Q 014834 99 DLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEAR 158 (417)
Q Consensus 99 ~~f~~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s--------------------~s~~~A~ 158 (417)
|-.+-.|..-.| ++|+|||-|.-|.+-|..|-+. |+.|+|+.|.+- +..++-.
T Consensus 1774 wm~p~pp~~rtg-~~vaiigsgpaglaaadqlnk~------gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~ 1846 (2142)
T KOG0399|consen 1774 WMKPCPPAFRTG-KRVAIIGSGPAGLAAADQLNKA------GHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLE 1846 (2142)
T ss_pred CCccCCcccccC-cEEEEEccCchhhhHHHHHhhc------CcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHH
Confidence 545555677788 9999999999999999999998 999999877532 3345555
Q ss_pred HcCceec----CCCcCCHHhhcCcCCEEEEccC
Q 014834 159 AAGFTEE----NGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 159 ~~G~~~~----~~~~~s~~Ea~~~ADIViLavp 187 (417)
+.|+... -|-..+++++-+.-|.|++++-
T Consensus 1847 ~egi~f~tn~eigk~vs~d~l~~~~daiv~a~g 1879 (2142)
T KOG0399|consen 1847 QEGIRFVTNTEIGKHVSLDELKKENDAIVLATG 1879 (2142)
T ss_pred hhCceEEeeccccccccHHHHhhccCeEEEEeC
Confidence 6675421 1112468889999999999853
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.85 E-value=4.3 Score=38.33 Aligned_cols=37 Identities=19% Similarity=0.133 Sum_probs=31.1
Q ss_pred ccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCh
Q 014834 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (417)
Q Consensus 108 l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s 151 (417)
+++ ++|-|.|. |-+|.++++.|.+. |++|++..|...
T Consensus 4 l~~-~~vlItGas~~iG~~ia~~l~~~------G~~v~~~~r~~~ 41 (257)
T PRK07067 4 LQG-KVALLTGAASGIGEAVAERYLAE------GARVVIADIKPA 41 (257)
T ss_pred CCC-CEEEEeCCCchHHHHHHHHHHHc------CCEEEEEcCCHH
Confidence 556 88999995 89999999999998 999887776543
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=85.82 E-value=2.9 Score=38.91 Aligned_cols=36 Identities=17% Similarity=0.094 Sum_probs=31.2
Q ss_pred ccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 014834 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (417)
Q Consensus 108 l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~ 150 (417)
++| +++.|+|. |-+|.++++.|.+. |..|++..|..
T Consensus 3 ~~~-~~~lItG~~g~iG~~~a~~l~~~------G~~vi~~~r~~ 39 (253)
T PRK08217 3 LKD-KVIVITGGAQGLGRAMAEYLAQK------GAKLALIDLNQ 39 (253)
T ss_pred CCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 567 89999997 99999999999998 99887776653
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 417 | ||||
| 1yve_I | 524 | Acetohydroxy Acid Isomeroreductase Complexed With N | 1e-167 | ||
| 3fr7_A | 525 | Ketol-Acid Reductoisomerase (Kari) In Complex With | 1e-167 | ||
| 1np3_A | 338 | Crystal Structure Of Class I Acetohydroxy Acid Isom | 1e-22 | ||
| 1yrl_A | 491 | Escherichia Coli Ketol-Acid Reductoisomerase Length | 1e-09 | ||
| 3ulk_A | 491 | E. Coli Ketol-Acid Reductoisomerase In Complex With | 1e-09 |
| >pdb|1YVE|I Chain I, Acetohydroxy Acid Isomeroreductase Complexed With Nadph, Magnesium And Inhibitor Ipoha (N-Hydroxy-N- Isopropyloxamate) Length = 524 | Back alignment and structure |
|
| >pdb|3FR7|A Chain A, Ketol-Acid Reductoisomerase (Kari) In Complex With Mg2+ Length = 525 | Back alignment and structure |
|
| >pdb|1NP3|A Chain A, Crystal Structure Of Class I Acetohydroxy Acid Isomeroreductase From Pseudomonas Aeruginosa Length = 338 | Back alignment and structure |
|
| >pdb|1YRL|A Chain A, Escherichia Coli Ketol-Acid Reductoisomerase Length = 491 | Back alignment and structure |
|
| >pdb|3ULK|A Chain A, E. Coli Ketol-Acid Reductoisomerase In Complex With Nadph And Mg2+ Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 417 | |||
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 1e-161 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 9e-10 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 1e-48 | |
| 1yrl_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 3e-44 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 5e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-04 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 2e-04 |
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* Length = 525 | Back alignment and structure |
|---|
Score = 463 bits (1193), Expect = e-161
Identities = 295/338 (87%), Positives = 317/338 (93%)
Query: 72 LDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLR 131
LDF+TSVF K+ +SLA +E+IVRGGR+LF LLP+AF GI QIGVIGWGSQGPAQAQNLR
Sbjct: 15 LDFDTSVFNKEKVSLAGHEEYIVRGGRNLFPLLPEAFKGIKQIGVIGWGSQGPAQAQNLR 74
Query: 132 DSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191
DSLAEAKSDIVVK+GLRKGS+SF EARAAGFTEE+GTLGDI+ET+SGSDLVLLLISDAAQ
Sbjct: 75 DSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLISDAAQ 134
Query: 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251
ADNYEKIFS MKPNSILGLSHGFLLGHLQS GLDFPKNI VIAVCPKGMGPSVRRLYVQG
Sbjct: 135 ADNYEKIFSHMKPNSILGLSHGFLLGHLQSAGLDFPKNISVIAVCPKGMGPSVRRLYVQG 194
Query: 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLG 311
KEINGAGINSSFAVHQDVDGRAT+VALGWSVALGSPFTFATTLEQEYKSDIFGERGILLG
Sbjct: 195 KEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLG 254
Query: 312 AVHGIVESLFRRFTENGMSEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFE 371
AVHGIVE+LFRR+TE GM E++AYKNTVE ITGIISK IS +GML VYNS + E KKEF
Sbjct: 255 AVHGIVEALFRRYTEQGMDEEMAYKNTVEGITGIISKTISKKGMLEVYNSLTEEGKKEFN 314
Query: 372 KAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFY 409
KAYSAS+YPCM+ILYECYEDVA+GSEIRSVVLAGRRFY
Sbjct: 315 KAYSASFYPCMDILYECYEDVASGSEIRSVVLAGRRFY 352
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* Length = 525 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 9e-10
Identities = 11/107 (10%), Positives = 35/107 (32%), Gaps = 3/107 (2%)
Query: 299 KSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVECITGIISKIISTQGMLAV 358
++D+ G ++ + + G S +V ++ + +G+ +
Sbjct: 383 ENDLGPLHPFTAGVYVALMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFM 442
Query: 359 YNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAG 405
++ S + K Y + + + V + I +++
Sbjct: 443 VDNCSTTARLGSRKWAPRFDYILTQ---QAFVTVDKDAPINQDLISN 486
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 Length = 338 | Back alignment and structure |
|---|
Score = 167 bits (425), Expect = 1e-48
Identities = 79/255 (30%), Positives = 130/255 (50%), Gaps = 27/255 (10%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
+ +IG+GSQG A A NL+DS + V VGLR GS + A+A A G + D+
Sbjct: 19 VAIIGYGSQGHAHACNLKDSGVD------VTVGLRSGSATVAKAEAHGL-----KVADVK 67
Query: 174 ETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGV 232
++ +D+V++L D Q Y++ I +K + L +HGF + H + ++ V
Sbjct: 68 TAVAAADVVMILTPDEFQGRLYKEEIEPNLKKGATLAFAHGFSI-HYNQV--VPRADLDV 124
Query: 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFTF 290
I + PK G +VR +V+G GI A++QD G A NVAL ++ +G
Sbjct: 125 IMIAPKAPGHTVRSEFVKGG-----GIPDLIAIYQDASGNAKNVALSYACGVGGGRTGII 179
Query: 291 ATTLEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVECI--TGIISK 348
TT + E ++D+FGE+ +L G +V++ F E G + ++AY EC+ +I
Sbjct: 180 ETTFKDETETDLFGEQAVLCGGCVELVKAGFETLVEAGYAPEMAY---FECLHELKLIVD 236
Query: 349 IISTQGMLAVYNSFS 363
++ G+ + S S
Sbjct: 237 LMYEGGIANMNYSIS 251
|
| >1yrl_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, knotted protein, oxidoreductase; 2.60A {Escherichia coli} Length = 491 | Back alignment and structure |
|---|
Score = 159 bits (404), Expect = 3e-44
Identities = 71/248 (28%), Positives = 102/248 (41%), Gaps = 37/248 (14%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-----RSFAEARAAGFTEENGT 168
+ ++G G+QG Q N+RDS + + LRK + S+ +A GF
Sbjct: 40 VVIVGCGAQGLNQGLNMRDSGLD------ISYALRKEAIAEKRASWRKATENGF-----K 88
Query: 169 LGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPK 228
+G E I +DLV+ L D +D + MK + LG SHGF + K
Sbjct: 89 VGTYEELIPQADLVINLTPDKQHSDVVRTVQPLMKDGAALGYSHGFNI-VEVGE--QIRK 145
Query: 229 NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH--QDVDGRATNVALGWSVALGS 286
+I V+ V PK G VR Y +G G+ + AVH D G +A W+ A G
Sbjct: 146 DITVVMVAPKCPGTEVREEYKRGF-----GVPTLIAVHPENDPKGEGMAIAKAWAAATGG 200
Query: 287 PFTFA----TTLEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVECI 342
A ++ E KSD+ GE+ IL G + F + E G A K
Sbjct: 201 --HRAGVLESSFVAEVKSDLMGEQTILCGMLQAGSLLCFDKLVEEGTDPAYAEK---LIQ 255
Query: 343 TGIISKII 350
G + I
Sbjct: 256 FGW--ETI 261
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} Length = 286 | Back alignment and structure |
|---|
Score = 56.2 bits (135), Expect = 5e-09
Identities = 26/173 (15%), Positives = 49/173 (28%), Gaps = 20/173 (11%)
Query: 114 IGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
+ ++G G G + + DS + + G L D
Sbjct: 14 VAILGAGGKMGARITRKIHDSAHHL-------AAIEIAPEGRDRLQGMGIP-----LTDG 61
Query: 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF--LLGHLQSIGLDFPKNI 230
I +D+V+L + D E I ++P +I+ + G + +I
Sbjct: 62 DGWIDEADVVVLALPDNIIEKVAEDIVPRVRPGTIVLILDAAAPYAGVMPE-----RADI 116
Query: 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA 283
P + GI V + G + A+G +
Sbjct: 117 TYFIGHPCHPPLFNDETDPAARTDYHGGIAKQAIVCALMQGPEEHYAIGADIC 169
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 2e-04
Identities = 53/480 (11%), Positives = 139/480 (28%), Gaps = 142/480 (29%)
Query: 41 KSLRALKTTRG------RGSALGAQ-MASETALKTPFLLDFETSVFKKDAISLANRDEFI 93
++L L+ + GS G +A + L + +F ++L N +
Sbjct: 142 QALLELRPAKNVLIDGVLGS--GKTWVALDVCLSYKVQCKMDFKIF---WLNLKNCNS-- 194
Query: 94 VRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKS-------------- 139
+ ++L I+ + + N++ + ++
Sbjct: 195 ---PETVLEMLQKLLYQIDPN-----WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 140 -----DI----VVK--------------------VGLRKGSRSFAEARAAGFTEE----- 165
++ + + + + T +
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 166 -----NGTLGDI-YETISGSDLVLLLIS-----DAAQADNYEKIFSCMKPNSILGLSHGF 214
+ D+ E ++ + L +I+ A DN++ + +C K +I+ S
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV-NCDKLTTIIESSLNV 365
Query: 215 L-----LGHLQSIGLDFPKNI----GVIAVCPKGMGPSVRRLYVQGKE----INGAGINS 261
L + + FP + ++++ + S + V + S
Sbjct: 366 LEPAEYRKMFDRLSV-FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424
Query: 262 SFAVH-------QDVDGRAT---------NVALGWSVALGSPFTFATTLEQEYKSDIFGE 305
+ ++ ++ N+ + +Y +
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF-----DSDDLIPPYLDQY---FYSH 476
Query: 306 RGI-LLGAVHGIVESLFR------RFTENGMSEDLAYKNTVECITGIISKIISTQGMLAV 358
G L H +LFR RF E + + +T +G I++T L
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFRFLEQ----KIRHDSTAWNASG---SILNTLQQLKF 529
Query: 359 YNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLA----GRRFYVSSYR 414
Y + ++ ++E+ +A ++ L + E++ + +A + +++
Sbjct: 530 YKPYICDNDPKYERLVNA----ILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHK 585
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* Length = 404 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 2e-04
Identities = 21/165 (12%), Positives = 49/165 (29%), Gaps = 14/165 (8%)
Query: 114 IGVIGWGSQGPAQAQNL-------------RDSLAEAKSDIVVKVGLRKGSRSFAEARAA 160
+ V G G+ + AE + + L +
Sbjct: 5 VCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTE 64
Query: 161 GFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQ 220
+ D ISG+D+V+L + A ++ + ++ ++++ Q
Sbjct: 65 VKSRPKVITKDPEIAISGADVVILTVPAFAHEGYFQAMAPYVQDSALIVGLPSQAGFEFQ 124
Query: 221 SIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265
+ +++ P R+ G+++ G S A
Sbjct: 125 CRDI-LGDKAAAVSMMSFETLPWACRIKEFGRKVEVLGTKSVLAA 168
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 417 | |||
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 100.0 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 100.0 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 100.0 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 100.0 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 99.97 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 99.93 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 99.9 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 99.89 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 99.89 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 99.85 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 99.84 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 99.83 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 99.8 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 99.8 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 99.79 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 99.78 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 99.7 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 99.68 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 99.62 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 99.61 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 99.61 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 99.59 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 99.58 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 99.57 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 99.57 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 99.56 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 99.56 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 99.56 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 99.52 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 99.52 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 99.51 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 99.5 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 99.5 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 99.48 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 99.48 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 99.48 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 99.48 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 99.47 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 99.46 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 99.45 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 99.45 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 99.45 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 99.43 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 99.42 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.42 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 99.42 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.41 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 99.41 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 99.4 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 99.4 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 99.39 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 99.39 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 99.39 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 99.38 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 99.38 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 99.37 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 99.37 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 99.37 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.36 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 99.06 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 99.34 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 99.34 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 99.33 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 99.33 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 99.32 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 99.3 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 99.3 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 99.29 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.27 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 99.26 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 99.26 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 99.23 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 99.23 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 99.2 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 99.2 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 99.2 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 99.2 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 99.19 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 99.18 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 99.18 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 99.17 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 99.17 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 99.17 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 99.16 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 99.15 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 99.15 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 99.15 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 99.14 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 99.14 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 99.13 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 99.13 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 99.12 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 99.12 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 99.11 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 99.09 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 99.09 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 99.08 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 99.08 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 99.07 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 99.07 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 99.06 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 99.05 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 99.04 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 99.04 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 99.03 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 99.02 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 99.02 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 99.02 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 99.0 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 98.99 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 98.99 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 98.98 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 98.98 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 98.91 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 98.91 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 98.82 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 98.82 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 98.81 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 98.79 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 98.77 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 98.77 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 98.75 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 98.74 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 98.72 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 98.71 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 98.71 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 98.69 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 98.69 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.67 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 98.66 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 98.64 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 98.64 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 98.63 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 98.59 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 98.58 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 98.56 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 98.55 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 98.52 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 98.46 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 98.44 | |
| 2b0j_A | 358 | 5,10-methenyltetrahydromethanopterin hydrogenase; | 98.41 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 98.39 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 98.36 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 98.36 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 98.35 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 98.33 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 98.3 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 98.3 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 98.3 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 98.29 | |
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 98.29 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.26 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 98.26 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 98.26 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 98.25 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 98.24 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.23 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 98.23 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 98.21 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 98.2 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 98.19 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 98.18 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 98.17 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 98.17 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 98.17 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 98.17 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.16 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 98.14 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 98.12 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 98.12 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 98.11 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.09 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 98.09 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 98.08 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 98.07 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.07 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 98.06 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 98.06 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 98.06 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 98.06 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.05 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 98.04 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 98.04 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 98.01 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 98.01 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 98.0 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 97.96 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 97.96 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 97.95 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 97.95 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 97.91 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 97.91 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 97.9 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 97.9 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 97.89 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 97.87 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 97.85 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 97.85 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 97.81 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 97.8 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 97.8 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.79 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 97.78 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 97.78 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 97.77 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 97.77 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 97.77 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 97.76 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 97.76 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 97.75 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 97.74 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.74 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 97.72 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.7 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 97.7 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 97.67 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 97.64 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 97.64 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 97.63 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 97.62 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 97.62 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 97.61 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 97.6 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 97.6 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 97.59 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 97.59 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 97.58 | |
| 3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.58 | |
| 2yv2_A | 297 | Succinyl-COA synthetase alpha chain; COA-binding d | 97.57 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 97.55 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 97.54 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 97.54 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 97.5 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 97.5 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.48 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 97.46 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 97.45 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 97.44 | |
| 3oqb_A | 383 | Oxidoreductase; structural genomics, protein struc | 97.43 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 97.39 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 97.39 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 97.39 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 97.34 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 97.32 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 97.3 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 97.3 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 97.3 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 97.3 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 97.28 | |
| 3ip3_A | 337 | Oxidoreductase, putative; structural genomics, PSI | 97.26 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 97.24 | |
| 1lc0_A | 294 | Biliverdin reductase A; oxidoreductase, tetrapyrro | 97.22 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 97.22 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 97.22 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 97.21 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 97.21 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 97.2 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 97.19 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 97.18 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 97.18 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 97.18 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 97.16 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 97.16 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 97.13 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 97.12 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 97.11 | |
| 1b7g_O | 340 | Protein (glyceraldehyde 3-phosphate dehydrogenase; | 97.09 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 97.08 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 97.08 | |
| 3keo_A | 212 | Redox-sensing transcriptional repressor REX; DNA b | 97.05 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 97.05 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 97.04 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 97.03 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 97.02 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 96.97 | |
| 4ew6_A | 330 | D-galactose-1-dehydrogenase protein; nysgrc, PSI-b | 96.96 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 96.92 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 96.92 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 96.91 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 96.9 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 96.89 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 96.88 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 96.87 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 96.84 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 96.83 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 96.81 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 96.79 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 96.76 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 96.75 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 96.71 | |
| 2yyy_A | 343 | Glyceraldehyde-3-phosphate dehydrogenase; glyceral | 96.7 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 96.66 | |
| 3do5_A | 327 | HOM, homoserine dehydrogenase; NP_069768.1, putati | 96.66 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 96.65 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 96.64 | |
| 2dt5_A | 211 | AT-rich DNA-binding protein; REX, NADH, NAD, rossm | 96.53 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 96.43 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 96.41 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 96.38 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 96.37 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 96.37 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 96.36 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 96.35 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 96.34 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 96.32 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 96.31 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 96.28 | |
| 2csu_A | 457 | 457AA long hypothetical protein; structural genomi | 96.23 | |
| 1j5p_A | 253 | Aspartate dehydrogenase; TM1643, structural genomi | 96.22 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 96.19 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 96.13 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 96.02 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 96.01 | |
| 3ing_A | 325 | Homoserine dehydrogenase; NP_394635.1, structural | 95.92 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 95.86 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 95.81 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 95.8 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 95.8 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 95.75 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 95.72 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 95.72 | |
| 1dxh_A | 335 | Ornithine carbamoyltransferase; transcarbamylase; | 95.71 | |
| 1duv_G | 333 | Octase-1, ornithine transcarbamoylase; enzyme-inhi | 95.71 | |
| 2dvm_A | 439 | Malic enzyme, 439AA long hypothetical malate oxido | 95.7 | |
| 1pvv_A | 315 | Otcase, ornithine carbamoyltransferase; dodecamer; | 95.7 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 95.66 | |
| 1u8f_O | 335 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l | 95.65 | |
| 3mtj_A | 444 | Homoserine dehydrogenase; rossmann-fold, PSI, MCSG | 95.62 | |
| 1vlv_A | 325 | Otcase, ornithine carbamoyltransferase; TM1097, st | 95.61 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 95.6 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 95.38 | |
| 1p3d_A | 475 | UDP-N-acetylmuramate--alanine ligase; alpha/beta p | 95.37 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 95.37 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 95.3 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 95.29 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 95.22 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 95.2 | |
| 2w37_A | 359 | Ornithine carbamoyltransferase, catabolic; transca | 95.19 | |
| 1ebf_A | 358 | Homoserine dehydrogenase; dinucleotide, NAD, dimer | 95.11 | |
| 4ep1_A | 340 | Otcase, ornithine carbamoyltransferase; structural | 95.09 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 95.03 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 95.02 | |
| 3gd5_A | 323 | Otcase, ornithine carbamoyltransferase; structural | 94.92 | |
| 4amu_A | 365 | Ornithine carbamoyltransferase, catabolic; ornithi | 94.9 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 94.87 | |
| 4b4u_A | 303 | Bifunctional protein fold; oxidoreductase; HET: NA | 94.83 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 94.82 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 94.72 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 94.69 | |
| 3tpf_A | 307 | Otcase, ornithine carbamoyltransferase; structural | 94.65 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 94.64 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 94.6 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 94.57 | |
| 1oth_A | 321 | Protein (ornithine transcarbamoylase); transferase | 94.56 | |
| 2ef0_A | 301 | Ornithine carbamoyltransferase; TTHA1199, thermus | 94.52 | |
| 2i6u_A | 307 | Otcase, ornithine carbamoyltransferase; X-RAY crys | 94.49 | |
| 3e5r_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 94.48 | |
| 3c8m_A | 331 | Homoserine dehydrogenase; structural genomics, APC | 94.41 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 94.38 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 94.37 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 94.37 | |
| 2ejw_A | 332 | HDH, homoserine dehydrogenase; NAD-dependent, oxid | 94.36 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 94.28 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 94.27 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 94.21 | |
| 4f2g_A | 309 | Otcase 1, ornithine carbamoyltransferase 1; struct | 94.2 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 94.18 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 94.14 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 94.14 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 94.1 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 93.94 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 93.89 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 93.89 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 93.85 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 93.84 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 93.77 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 93.77 | |
| 2f00_A | 491 | UDP-N-acetylmuramate--L-alanine ligase; amide bond | 93.75 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 93.74 | |
| 1ml4_A | 308 | Aspartate transcarbamoylase; beta pleated sheet, p | 93.73 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 93.69 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 93.68 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 93.61 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 93.53 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 93.5 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 93.39 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 93.38 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 93.36 | |
| 3r7f_A | 304 | Aspartate carbamoyltransferase; aspartate transcar | 93.35 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 93.35 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 93.33 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 93.32 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 93.32 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 93.31 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 93.29 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 93.28 | |
| 3grf_A | 328 | Ornithine carbamoyltransferase; ornithine transcar | 93.22 | |
| 3hn7_A | 524 | UDP-N-acetylmuramate-L-alanine ligase; ATP-binding | 93.17 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 93.13 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 93.13 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 93.13 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 93.12 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 93.11 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 93.1 | |
| 3d6n_B | 291 | Aspartate carbamoyltransferase; reactor, chamber, | 93.08 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 93.01 | |
| 2h1q_A | 270 | Hypothetical protein; ZP_00559375.1, structural ge | 92.97 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 92.94 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 92.93 | |
| 4a8t_A | 339 | Putrescine carbamoyltransferase; trabnsferase PALO | 92.92 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 92.91 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 92.87 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 92.83 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 92.78 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 92.72 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 92.71 | |
| 3sds_A | 353 | Ornithine carbamoyltransferase, mitochondrial; str | 92.7 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 92.65 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 92.65 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 92.62 | |
| 2yfk_A | 418 | Aspartate/ornithine carbamoyltransferase; transcar | 92.58 | |
| 3cps_A | 354 | Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g | 92.55 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 92.51 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 92.49 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 92.44 | |
| 3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 92.41 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 92.4 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 92.4 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 92.36 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 92.35 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 92.34 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 92.29 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 92.29 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 92.1 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 92.09 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 92.05 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 92.04 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 91.96 | |
| 1gtm_A | 419 | Glutamate dehydrogenase; oxidoreductase, NAD, NADP | 91.93 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 91.93 | |
| 4ffl_A | 363 | PYLC; amino acid, biosynthesis of pyrrolysine, iso | 91.92 | |
| 3q98_A | 399 | Transcarbamylase; rossmann fold, transferase; 2.00 | 91.89 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 91.84 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 91.84 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 91.78 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 91.71 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 91.69 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 91.66 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 91.65 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 91.61 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 91.58 | |
| 3csu_A | 310 | Protein (aspartate carbamoyltransferase); transfer | 91.57 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 91.49 | |
| 3aog_A | 440 | Glutamate dehydrogenase; NAD(H), oxidoreducta; HET | 91.45 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 91.43 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 91.4 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 91.37 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 91.33 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 91.3 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 91.26 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 91.22 | |
| 3l5o_A | 270 | Uncharacterized protein from DUF364 family; RARE m | 91.22 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 91.03 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 90.94 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 90.93 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 90.87 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 90.82 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 90.78 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 90.67 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 90.65 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 90.65 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 90.59 | |
| 4a8p_A | 355 | Putrescine carbamoyltransferase; ornithine agmatin | 90.58 | |
| 3vh1_A | 598 | Ubiquitin-like modifier-activating enzyme ATG7; au | 90.54 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 90.54 | |
| 1r0k_A | 388 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; N | 90.5 | |
| 3nkl_A | 141 | UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo | 90.47 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 90.37 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 90.35 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 90.31 | |
| 1pg5_A | 299 | Aspartate carbamoyltransferase; 2.60A {Sulfolobus | 90.26 | |
| 2qrj_A | 394 | Saccharopine dehydrogenase, NAD+, L-lysine- formin | 90.24 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 90.17 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 90.16 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 90.14 | |
| 3u95_A | 477 | Glycoside hydrolase, family 4; hydrolysis, cytosol | 90.12 | |
| 4gsl_A | 615 | Ubiquitin-like modifier-activating enzyme ATG7; ub | 90.11 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 90.05 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 90.01 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 89.98 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 89.9 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 89.89 | |
| 2tmg_A | 415 | Protein (glutamate dehydrogenase); metabolic role, | 89.88 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 89.76 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 89.74 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 89.68 | |
| 3b1j_A | 339 | Glyceraldehyde 3-phosphate dehydrogenase (NADP+); | 89.55 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 89.41 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 89.39 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 89.35 |
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-81 Score=648.36 Aligned_cols=346 Identities=85% Similarity=1.295 Sum_probs=324.1
Q ss_pred CccccccccccchHhhhhhcccchhhhcccccccccchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEe
Q 014834 68 TPFLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGL 147 (417)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~e~~vr~g~~~f~~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~ 147 (417)
.+..++|||++|.+++++|+|++|++|++|+|+|++++++|+|+|||||||+|+||.+||++|+++++++++|++|++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~g~~E~v~~~~~w~~~~~~~~L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~ 90 (525)
T 3fr7_A 11 AMPSLDFDTSVFNKEKVSLAGHEEYIVRGGRNLFPLLPEAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGL 90 (525)
T ss_dssp ----CCCCCSSSCEEEEEETTEEEEEEECCGGGGGGHHHHTTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred cccccccccccceeeEeecCCcceEEEeccccccccChHHhcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEe
Confidence 45679999999999999999999999999999999999999999999999999999999999999988899999999999
Q ss_pred cCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCC
Q 014834 148 RKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFP 227 (417)
Q Consensus 148 r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~ 227 (417)
+.++++++.|++.|+...++++.+++|++++||+|||++||..+.+++++|.++|++|++|+++|||+++++++..+.+|
T Consensus 91 r~~sks~e~A~e~G~~v~d~ta~s~aEAa~~ADVVILaVP~~~~~eVl~eI~p~LK~GaILs~AaGf~I~~le~~~i~~p 170 (525)
T 3fr7_A 91 RKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSAGLDFP 170 (525)
T ss_dssp CTTCSCHHHHHHTTCCTTTTCEEEHHHHHHHCSEEEECSCHHHHHHHHHHHHHHSCTTCEEEESSSHHHHHHHHTTCCCC
T ss_pred CCchhhHHHHHHCCCEEecCCCCCHHHHHhcCCEEEECCChHHHHHHHHHHHHhcCCCCeEEEeCCCCHHHHhhhcccCC
Confidence 98888899999999984233346899999999999999999999999999999999999999999999998876567899
Q ss_pred CCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccch
Q 014834 228 KNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERG 307 (417)
Q Consensus 228 ~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t 307 (417)
++++|||+|||+|+++||++|.+|+++||+|+++++++++|+++++++++++|+.++|+.++++|+|++|+++|+||+|+
T Consensus 171 ~dv~VVrVmPNtPg~~VR~~y~~G~~~~g~Gv~~liAv~qd~tgea~e~alala~aiG~~~vieTtf~eE~e~DLfgeqt 250 (525)
T 3fr7_A 171 KNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERG 250 (525)
T ss_dssp TTSEEEEEEESSCHHHHHHHHHHHTTSTTCSCCEEEEEEECSSSCHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHT
T ss_pred CCCcEEEEecCCCchhHHHHHhcccccccCCccEEEEcCCCCCHHHHHHHHHHHHHCCCCeeeeeeeeeehhHhhhhhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhcccCchhhhhhhhhhccChhHHHHHHH
Q 014834 308 ILLGAVHGIVESLFRRFTENGMSEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYE 387 (417)
Q Consensus 308 ~L~G~~pA~iea~~d~~v~~Gl~~e~A~~~~~q~~~~g~~~li~e~G~~~l~~~vss~~~~~~~~~~~~~~~~~~~~m~~ 387 (417)
+|||++|+++++++|++|++||||++||++++|+++|+|++||+|+|+.+|+++||+|++++||++|...+.|+|++|+|
T Consensus 251 vLsG~~pAlieA~~d~lVe~G~~pe~Ay~~~~qel~~~i~~li~e~G~~~m~~~~S~ta~~~~~~~~~~~~~~~~~~m~~ 330 (525)
T 3fr7_A 251 ILLGAVHGIVEALFRRYTEQGMDEEMAYKNTVEGITGIISKTISKKGMLEVYNSLTEEGKKEFNKAYSASFYPCMDILYE 330 (525)
T ss_dssp TTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTHHHHHHHHHCHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCcHHHHHHHHHhccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999887799999988778899999999
Q ss_pred HHHhhccChHHHHHHHcCCcc-ccccc
Q 014834 388 CYEDVAAGSEIRSVVLAGRRF-YVSSY 413 (417)
Q Consensus 388 ~~~~v~~g~~~~~~~~~~~~~-~~~~~ 413 (417)
||++||+|+|+|+||++|+|+ ||..+
T Consensus 331 ~~~~i~~G~~~~~~~~~~~~~~~~~~~ 357 (525)
T 3fr7_A 331 CYEDVASGSEIRSVVLAGRRFYEKEGL 357 (525)
T ss_dssp HHHHHHHSHHHHHHHHHHHTTSCBTTB
T ss_pred HHHHHhCCHHHHHHHHhcCccchhccc
Confidence 999999999999999998754 55443
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-73 Score=582.43 Aligned_cols=314 Identities=26% Similarity=0.379 Sum_probs=295.0
Q ss_pred ccccccccchHhhhh-----hcccchhhhcccccccccchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEE
Q 014834 71 LLDFETSVFKKDAIS-----LANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV 145 (417)
Q Consensus 71 ~~~~~~~~~~~~~~~-----~~~~~e~~vr~g~~~f~~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViV 145 (417)
.|||||++||+|+.+ ||+++| |..+++.|+| |||+|||||+||+|+|+||||| |++|+|
T Consensus 2 ~ny~n~l~~~~~~~~~~~c~~m~~~e---------F~~~~~~lkg-K~IaVIGyGsQG~AqAlNLRDS------Gv~V~V 65 (491)
T 3ulk_A 2 ANYFNTLNLRQQLAQLGKCRFMGRDE---------FADGASYLQG-KKVVIVGCGAQGLNQGLNMRDS------GLDISY 65 (491)
T ss_dssp CCTGGGSCHHHHHHHHTCCEECCGGG---------GTTTTGGGTT-SEEEEESCSHHHHHHHHHHHHT------TCEEEE
T ss_pred cchhccccHHHHHHHhccceeccHHH---------hcchhHHHcC-CEEEEeCCChHhHHHHhHHHhc------CCcEEE
Confidence 499999999999987 788888 8999999999 9999999999999999999999 999999
Q ss_pred EecCCh-----hhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEecCchhhhhh
Q 014834 146 GLRKGS-----RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQ 220 (417)
Q Consensus 146 g~r~~s-----~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~G~~i~~~~ 220 (417)
++|+++ +||++|+++||. +.+++|++++||+|++++||..|.++|++|.|+||+|++|.++|||+|++.
T Consensus 66 glr~~s~~e~~~S~~~A~~~Gf~-----v~~~~eA~~~ADvV~~L~PD~~q~~vy~~I~p~lk~G~~L~faHGFnI~~~- 139 (491)
T 3ulk_A 66 ALRKEAIAEKRASWRKATENGFK-----VGTYEELIPQADLVINLTPDKQHSDVVRTVQPLMKDGAALGYSHGFNIVEV- 139 (491)
T ss_dssp EECHHHHHTTCHHHHHHHHTTCE-----EEEHHHHGGGCSEEEECSCGGGHHHHHHHHGGGSCTTCEEEESSCHHHHTT-
T ss_pred EeCCCCcccccchHHHHHHCCCE-----ecCHHHHHHhCCEEEEeCChhhHHHHHHHHHhhCCCCCEEEecCccccccc-
Confidence 999544 899999999999 468999999999999999999999999999999999999999999999764
Q ss_pred hcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeec--CCCCHHHHHHHHHHHHHhCCCc--eeccchhh
Q 014834 221 SIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH--QDVDGRATNVALGWSVALGSPF--TFATTLEQ 296 (417)
Q Consensus 221 ~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~--~dvsgea~e~a~~L~~alG~~~--~iettf~~ 296 (417)
.+.||+|++||+|+||+||+.||++|++| +|+|++|+|| ||.+|++++++++|+.++|++| +++|||++
T Consensus 140 --~i~pp~dvdVimVAPKgpG~~VR~~y~~G-----~GvP~liAVhqeqD~sG~a~~~AlayA~aiG~~raGvieTTF~e 212 (491)
T 3ulk_A 140 --GEQIRKDITVVMVAPKCPGTEVREEYKRG-----FGVPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVA 212 (491)
T ss_dssp --CCCCCTTSEEEEEEESSCHHHHHHHHHTT-----CCCCEEEEECGGGCTTSCHHHHHHHHHHHHTGGGTCEEECCHHH
T ss_pred --ccccCCCcceEEeCCCCCcHHHHHHHHcC-----CCCceEEEEEeCCCCchhHHHHHHHHHHhcCCCcCceeeccHHH
Confidence 57999999999999999999999999996 8999999997 8999999999999999999986 89999999
Q ss_pred hhhhhccccchhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhcccCchhhhhhhhhhc
Q 014834 297 EYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSA 376 (417)
Q Consensus 297 e~~~dl~ge~t~L~G~~pA~iea~~d~~v~~Gl~~e~A~~~~~q~~~~g~~~li~e~G~~~l~~~vss~~~~~~~~~~~~ 376 (417)
|+++||||||++|||+++++++++||.+|++|++|+.|+.++.+++. .|+++|+++|+.+|+++|| +|++||++..+
T Consensus 213 EtetDLfGEQaVLcGgl~~li~agFetLveaGy~P~~a~~~~~~e~k-lIvdli~egGi~~M~~siS--~TAe~G~~~~~ 289 (491)
T 3ulk_A 213 EVKSDLMGEQTILCGMLQAGSLLCFDKLVEEGTDPAYAEKLIQFGWE-TITEALKQGGITLMMDRLS--NPAKLRAYALS 289 (491)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTSC--HHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh-HHHHHHHhCCHHHHHHhcC--chhhccchhhh
Confidence 99999999999999999999999999999999999999999888887 9999999999999999999 88899998433
Q ss_pred -c-ChhHHHHHHHHHHhhccChHHHHHHHcCCcccccccccc
Q 014834 377 -S-YYPCMEILYECYEDVAAGSEIRSVVLAGRRFYVSSYRLR 416 (417)
Q Consensus 377 -~-~~~~~~~m~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~ 416 (417)
+ .+.+++.|+++|++||+|+|+|+|+.+++..+++...||
T Consensus 290 ~~~~~~~k~~~~~~l~~I~sG~Fa~~~~~e~~~g~~~l~~~R 331 (491)
T 3ulk_A 290 EQLKEIMAPLFQKHMDDIISGEFSSGMMADWANDDKKLLTWR 331 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHcCChhHHHHH
Confidence 3 446778999999999999999999999999999888776
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=317.70 Aligned_cols=281 Identities=29% Similarity=0.518 Sum_probs=247.9
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
..+++ ++|+|||+|+||.++|++|+++ |++|++++++.+++.+.+.+.|+.. . ++++++++||+||++
T Consensus 12 ~~l~~-~~I~IIG~G~mG~alA~~L~~~------G~~V~~~~~~~~~~~~~a~~~G~~~----~-~~~e~~~~aDvVila 79 (338)
T 1np3_A 12 SIIQG-KKVAIIGYGSQGHAHACNLKDS------GVDVTVGLRSGSATVAKAEAHGLKV----A-DVKTAVAAADVVMIL 79 (338)
T ss_dssp HHHHT-SCEEEECCSHHHHHHHHHHHHT------TCCEEEECCTTCHHHHHHHHTTCEE----E-CHHHHHHTCSEEEEC
T ss_pred chhcC-CEEEEECchHHHHHHHHHHHHC------cCEEEEEECChHHHHHHHHHCCCEE----c-cHHHHHhcCCEEEEe
Confidence 56788 8999999999999999999999 9999888887666678888899874 3 888999999999999
Q ss_pred cCCchHHHHHH-HHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEe
Q 014834 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (417)
Q Consensus 186 vpd~~~~~Vl~-eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~lia 264 (417)
+|+..+.++++ ++.+++++|++|++++|+++ .... +..+.+++|+++||++|++.++++|+.| +|.+++++
T Consensus 80 vp~~~~~~v~~~~i~~~l~~~~ivi~~~gv~~-~~~~--~~~~~~~~vv~~~P~gp~~a~~~l~~~G-----~g~~~ii~ 151 (338)
T 1np3_A 80 TPDEFQGRLYKEEIEPNLKKGATLAFAHGFSI-HYNQ--VVPRADLDVIMIAPKAPGHTVRSEFVKG-----GGIPDLIA 151 (338)
T ss_dssp SCHHHHHHHHHHHTGGGCCTTCEEEESCCHHH-HTTS--SCCCTTCEEEEEEESSCSHHHHHHHHTT-----CCCCEEEE
T ss_pred CCcHHHHHHHHHHHHhhCCCCCEEEEcCCchh-HHHh--hcCCCCcEEEeccCCCCchhHHHHHhcc-----CCCeEEEE
Confidence 99999999998 99999999999999999987 4433 3346778999999999999999999975 79999889
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCCc--eeccchhhhhhhhccccchhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 014834 265 VHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVECI 342 (417)
Q Consensus 265 v~~dvsgea~e~a~~L~~alG~~~--~iettf~~e~~~dl~ge~t~L~G~~pA~iea~~d~~v~~Gl~~e~A~~~~~q~~ 342 (417)
++++.++++.+.+..|+..+|..+ ++++++++|...|+++++++|||++|+++..+++.+++.|+++++||++++++.
T Consensus 152 ~~~~~~~~a~~~~~~l~~~lG~~~agv~~~~~~~~~~~~~~~s~~~l~G~lp~~ia~~~e~l~~~Gl~~~~a~~e~~~~~ 231 (338)
T 1np3_A 152 IYQDASGNAKNVALSYACGVGGGRTGIIETTFKDETETDLFGEQAVLCGGCVELVKAGFETLVEAGYAPEMAYFECLHEL 231 (338)
T ss_dssp EEECSSSCHHHHHHHHHHHTTHHHHCEEECCHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTTH
T ss_pred ecCCCCHHHHHHHHHHHHHcCCCccceEeechhcccchHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHhhhHH
Confidence 999889999999999999999755 788889999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHHhcHHHHHhcccCchhhhhhhhhhc-c--ChhHHHHHHHHHHhhccChHHHHHHHcCCccc
Q 014834 343 TGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSA-S--YYPCMEILYECYEDVAAGSEIRSVVLAGRRFY 409 (417)
Q Consensus 343 ~~g~~~li~e~G~~~l~~~vss~~~~~~~~~~~~-~--~~~~~~~m~~~~~~v~~g~~~~~~~~~~~~~~ 409 (417)
. .+.+++..+|+..|+...+ +.+.|+++... + .+..++.|+++++.|++|+|+++|+.+++...
T Consensus 232 ~-~~~~~~~~gg~~~~r~a~s--~p~~~~d~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~r 298 (338)
T 1np3_A 232 K-LIVDLMYEGGIANMNYSIS--NNAEYGEYVTGPEVINAESRAAMRNALKRIQDGEYAKMFITEGAANY 298 (338)
T ss_dssp H-HHHHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTTHHHHHHHHHHHTTS
T ss_pred H-HHHHHHHhcCHHHHHHhcC--CHHHHhhhhcCCccccHHHHHHHHHHHHHHhCCHHHHHHHHHHhccc
Confidence 7 9999999999888876666 56689997543 2 26678999999999999999999999876533
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-33 Score=270.97 Aligned_cols=221 Identities=15% Similarity=0.116 Sum_probs=192.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc---EEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~---~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd 188 (417)
+||+|||+|+||.+++++|.++ |+ +|++++|+.++..+.+.+.|+.. ..++.++++++|+||+++||
T Consensus 4 ~~I~iIG~G~mG~aia~~l~~~------g~~~~~V~v~dr~~~~~~~l~~~~gi~~----~~~~~~~~~~aDvVilav~p 73 (280)
T 3tri_A 4 SNITFIGGGNMARNIVVGLIAN------GYDPNRICVTNRSLDKLDFFKEKCGVHT----TQDNRQGALNADVVVLAVKP 73 (280)
T ss_dssp SCEEEESCSHHHHHHHHHHHHT------TCCGGGEEEECSSSHHHHHHHHTTCCEE----ESCHHHHHSSCSEEEECSCG
T ss_pred CEEEEEcccHHHHHHHHHHHHC------CCCCCeEEEEeCCHHHHHHHHHHcCCEE----eCChHHHHhcCCeEEEEeCH
Confidence 7899999999999999999999 88 89888887665555555568875 57899999999999999999
Q ss_pred chHHHHHHHHHhc-CCCCcE-EEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeec
Q 014834 189 AAQADNYEKIFSC-MKPNSI-LGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (417)
Q Consensus 189 ~~~~~Vl~eI~~~-lk~gai-Li~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~ 266 (417)
+...+++++|.++ ++++++ |++++|+++..++. .++.+.+++++|||+|..+ |+|++. +++.
T Consensus 74 ~~~~~vl~~l~~~~l~~~~iiiS~~agi~~~~l~~---~l~~~~~vvr~mPn~p~~v------------~~g~~~-l~~~ 137 (280)
T 3tri_A 74 HQIKMVCEELKDILSETKILVISLAVGVTTPLIEK---WLGKASRIVRAMPNTPSSV------------RAGATG-LFAN 137 (280)
T ss_dssp GGHHHHHHHHHHHHHTTTCEEEECCTTCCHHHHHH---HHTCCSSEEEEECCGGGGG------------TCEEEE-EECC
T ss_pred HHHHHHHHHHHhhccCCCeEEEEecCCCCHHHHHH---HcCCCCeEEEEecCChHHh------------cCccEE-EEeC
Confidence 9999999999998 888865 45889999887765 4566678999999999987 688888 5667
Q ss_pred CCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHHH----HHHHHHHHHHcCCCHHHHHHHHHHHH
Q 014834 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGI----VESLFRRFTENGMSEDLAYKNTVECI 342 (417)
Q Consensus 267 ~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA~----iea~~d~~v~~Gl~~e~A~~~~~q~~ 342 (417)
.+++.++.+.+..|+..+|.... ...+++++..++++|++|+| ++++.|.+++.|+|+++|++++.|++
T Consensus 138 ~~~~~~~~~~v~~l~~~iG~~~~-------v~~E~~~d~~talsgsgpa~~~~~~eal~~a~v~~Gl~~~~a~~l~~~t~ 210 (280)
T 3tri_A 138 ETVDKDQKNLAESIMRAVGLVIW-------VSSEDQIEKIAALSGSGPAYIFLIMEALQEAAEQLGLTKETAELLTEQTV 210 (280)
T ss_dssp TTSCHHHHHHHHHHHGGGEEEEE-------CSSHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCeEE-------ECCHHHhhHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 88899999999999999996411 12456788899999999995 69999999999999999999999999
Q ss_pred HHHHHHHHHHhcH--HHHHhcccCch
Q 014834 343 TGIISKIISTQGM--LAVYNSFSGED 366 (417)
Q Consensus 343 ~~g~~~li~e~G~--~~l~~~vss~~ 366 (417)
. |+++|+.++|. ..|+|.||||.
T Consensus 211 ~-G~a~~~~~~~~~p~~l~~~v~spg 235 (280)
T 3tri_A 211 L-GAARMALETEQSVVQLRQFVTSPG 235 (280)
T ss_dssp H-HHHHHHHTCSSCHHHHHHHHCCTT
T ss_pred H-HHHHHHHhcCCCHHHHHHhccCCC
Confidence 9 99999999997 99999999994
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=247.80 Aligned_cols=221 Identities=19% Similarity=0.254 Sum_probs=175.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc----EEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~----~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavp 187 (417)
+||+|||+|+||.+++++|.++ |+ +|++++|+.++..+.+.+.|+.. ..++.|+++++|+||+++|
T Consensus 3 ~~i~iIG~G~mG~~~a~~l~~~------g~~~~~~V~~~~r~~~~~~~~~~~~g~~~----~~~~~e~~~~aDvVilav~ 72 (247)
T 3gt0_A 3 KQIGFIGCGNMGMAMIGGMINK------NIVSSNQIICSDLNTANLKNASEKYGLTT----TTDNNEVAKNADILILSIK 72 (247)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TSSCGGGEEEECSCHHHHHHHHHHHCCEE----CSCHHHHHHHCSEEEECSC
T ss_pred CeEEEECccHHHHHHHHHHHhC------CCCCCCeEEEEeCCHHHHHHHHHHhCCEE----eCChHHHHHhCCEEEEEeC
Confidence 7899999999999999999999 97 89888877555444445568875 6789999999999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeec
Q 014834 188 DAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~gaiLi-~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~ 266 (417)
|+...++++++.++++++++|+ +++|+++..+.+ .++.+.+++++|||+|... |+|+.. +++.
T Consensus 73 ~~~~~~v~~~l~~~l~~~~~vvs~~~gi~~~~l~~---~~~~~~~~v~~~p~~p~~~------------~~g~~~-~~~~ 136 (247)
T 3gt0_A 73 PDLYASIINEIKEIIKNDAIIVTIAAGKSIESTEN---AFNKKVKVVRVMPNTPALV------------GEGMSA-LCPN 136 (247)
T ss_dssp TTTHHHHC---CCSSCTTCEEEECSCCSCHHHHHH---HHCSCCEEEEEECCGGGGG------------TCEEEE-EEEC
T ss_pred HHHHHHHHHHHHhhcCCCCEEEEecCCCCHHHHHH---HhCCCCcEEEEeCChHHHH------------cCceEE-EEeC
Confidence 9999999999999999998755 889998876654 4456678999999999887 577776 6667
Q ss_pred CCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 014834 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHG----IVESLFRRFTENGMSEDLAYKNTVECI 342 (417)
Q Consensus 267 ~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA----~iea~~d~~v~~Gl~~e~A~~~~~q~~ 342 (417)
...+.++.+.+..++..+|.. + +..++.++..++++|++|+ ++|++.+.+++.|+++++|++++.+++
T Consensus 137 ~~~~~~~~~~~~~l~~~~G~~--~------~~~e~~~d~~~a~~g~gpa~~~~~~eal~~a~~~~Gl~~~~a~~~~~~~~ 208 (247)
T 3gt0_A 137 EMVTEKDLEDVLNIFNSFGQT--E------IVSEKLMDVVTSVSGSSPAYVYMIIEAMADAAVLDGMPRNQAYKFAAQAV 208 (247)
T ss_dssp TTCCHHHHHHHHHHHGGGEEE--E------ECCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhCCCE--E------EeCHHHccHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 778899999999999999963 2 2234568888999999998 478888889999999999999999999
Q ss_pred HHHHHHHHHHhcH--HHHHhcccCchh
Q 014834 343 TGIISKIISTQGM--LAVYNSFSGEDK 367 (417)
Q Consensus 343 ~~g~~~li~e~G~--~~l~~~vss~~~ 367 (417)
. ++++|+.++|. ..|+|+||||.-
T Consensus 209 ~-gs~~~~~~~~~~p~~l~~~v~spgG 234 (247)
T 3gt0_A 209 L-GSAKMVLETGIHPGELKDMVCSPGG 234 (247)
T ss_dssp H-HHHHHHHHSCC--------------
T ss_pred H-HHHHHHHHcCCCHHHHHHhcCCCCc
Confidence 9 99999999998 999999999963
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-24 Score=214.97 Aligned_cols=222 Identities=14% Similarity=0.090 Sum_probs=178.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC----cEEEEEecCCh-hhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G----~~ViVg~r~~s-~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
+||+|||+|+||.++|.+|.++ | ++|++++|+.+ ...+...+.|+.. ..++.++++++|+||+++
T Consensus 23 mkI~iIG~G~mG~ala~~L~~~------G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~----~~~~~e~~~~aDvVilav 92 (322)
T 2izz_A 23 MSVGFIGAGQLAFALAKGFTAA------GVLAAHKIMASSPDMDLATVSALRKMGVKL----TPHNKETVQHSDVLFLAV 92 (322)
T ss_dssp CCEEEESCSHHHHHHHHHHHHT------TSSCGGGEEEECSCTTSHHHHHHHHHTCEE----ESCHHHHHHHCSEEEECS
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCCCcceEEEECCCccHHHHHHHHHcCCEE----eCChHHHhccCCEEEEEe
Confidence 7899999999999999999998 8 78888887653 2344555678875 567889999999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEE-ecCchhhhhhhccc-CCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEe
Q 014834 187 SDAAQADNYEKIFSCMKPNSILGL-SHGFLLGHLQSIGL-DFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiLi~-a~G~~i~~~~~~~i-~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~lia 264 (417)
||+...+++++|.+.++++++|+. +.|+.+..+.+... .+ .+.+|++.||++|... +.|... ++
T Consensus 93 ~~~~~~~vl~~l~~~l~~~~ivvs~s~gi~~~~l~~~l~~~~-~~~~vv~~~p~~p~~~------------~~g~~v-~~ 158 (322)
T 2izz_A 93 KPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFR-PAPRVIRCMTNTPVVV------------REGATV-YA 158 (322)
T ss_dssp CGGGHHHHHHHHGGGCCTTCEEEECCTTCCHHHHHHHHHTTS-SCCEEEEEECCGGGGG------------TCEEEE-EE
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHhhcC-CCCeEEEEeCCcHHHH------------cCCeEE-EE
Confidence 999999999999999999998775 46887654433100 11 2457999999999876 456654 55
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHHH----HHHHHHHHHHcCCCHHHHHHHHHH
Q 014834 265 VHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGI----VESLFRRFTENGMSEDLAYKNTVE 340 (417)
Q Consensus 265 v~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA~----iea~~d~~v~~Gl~~e~A~~~~~q 340 (417)
...+.+.++.+.+..++..+|.. + +..+++++..+.++|++|++ ++++.+.+++.|+++++++.++.+
T Consensus 159 ~g~~~~~~~~~~v~~ll~~~G~~--~------~~~e~~~~~~~a~~g~gpa~~~~~~eala~a~~~~Gl~~~~a~~l~~~ 230 (322)
T 2izz_A 159 TGTHAQVEDGRLMEQLLSSVGFC--T------EVEEDLIDAVTGLSGSGPAYAFTALDALADGGVKMGLPRRLAVRLGAQ 230 (322)
T ss_dssp ECTTCCHHHHHHHHHHHHTTEEE--E------ECCGGGHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHHhCCCE--E------EeCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 56667789999999999999953 1 22356788889999999884 788889999999999999999999
Q ss_pred HHHHHHHHHHHHhcH--HHHHhcccCch
Q 014834 341 CITGIISKIISTQGM--LAVYNSFSGED 366 (417)
Q Consensus 341 ~~~~g~~~li~e~G~--~~l~~~vss~~ 366 (417)
++. ++++++.++|. ..+++.+++|.
T Consensus 231 ~~~-g~~~~~~~~~~~p~~l~~~v~sp~ 257 (322)
T 2izz_A 231 ALL-GAAKMLLHSEQHPGQLKDNVSSPG 257 (322)
T ss_dssp HHH-HHHHHHHHCSSCHHHHHHHHCCTT
T ss_pred HHH-HHHHHHHhcCCCHHHHHHhCCCCC
Confidence 999 99999988865 67899999884
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-22 Score=190.40 Aligned_cols=213 Identities=13% Similarity=0.185 Sum_probs=169.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC----cEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G----~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavp 187 (417)
+||+|||+|+||.+++.+|.++ | ++|.+++|+.++ .|+.. ..++.++++++|+||+++|
T Consensus 5 m~i~iiG~G~mG~~~a~~l~~~------g~~~~~~v~~~~~~~~~-------~g~~~----~~~~~~~~~~~D~vi~~v~ 67 (262)
T 2rcy_A 5 IKLGFMGLGQMGSALAHGIANA------NIIKKENLFYYGPSKKN-------TTLNY----MSSNEELARHCDIIVCAVK 67 (262)
T ss_dssp SCEEEECCSHHHHHHHHHHHHH------TSSCGGGEEEECSSCCS-------SSSEE----CSCHHHHHHHCSEEEECSC
T ss_pred CEEEEECcCHHHHHHHHHHHHC------CCCCCCeEEEEeCCccc-------CceEE----eCCHHHHHhcCCEEEEEeC
Confidence 6899999999999999999998 8 688888776443 57765 5678899999999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeecC
Q 014834 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~ 267 (417)
+....++++++.++++++.+|++++|+....+.+ .++.+.++++++|+.|... +.| ...++...
T Consensus 68 ~~~~~~v~~~l~~~l~~~~vv~~~~gi~~~~l~~---~~~~~~~~v~~~p~~p~~~------------~~g-~~~~~~~~ 131 (262)
T 2rcy_A 68 PDIAGSVLNNIKPYLSSKLLISICGGLNIGKLEE---MVGSENKIVWVMPNTPCLV------------GEG-SFIYCSNK 131 (262)
T ss_dssp TTTHHHHHHHSGGGCTTCEEEECCSSCCHHHHHH---HHCTTSEEEEEECCGGGGG------------TCE-EEEEEECT
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHH---HhCCCCcEEEECCChHHHH------------cCC-eEEEEeCC
Confidence 9999999999999885444667889998766554 3455557889999998776 577 44466666
Q ss_pred CCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 014834 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHG----IVESLFRRFTENGMSEDLAYKNTVECIT 343 (417)
Q Consensus 268 dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA----~iea~~d~~v~~Gl~~e~A~~~~~q~~~ 343 (417)
..+.+..+.+..++..+|. .+. ..++.++..++++++.|+ +++++.+.+++.|++++.++..+.+.+.
T Consensus 132 ~~~~~~~~~~~~ll~~~G~--~~~------~~~~~~~~~~a~~~~~~~~~~~~~~al~~~~~~~Gl~~~~~~~~~~~~~~ 203 (262)
T 2rcy_A 132 NVNSTDKKYVNDIFNSCGI--IHE------IKEKDMDIATAISGCGPAYVYLFIESLIDAGVKNGLSRELSKNLVLQTIK 203 (262)
T ss_dssp TCCHHHHHHHHHHHHTSEE--EEE------CCGGGHHHHHHHTTSHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCC--EEE------eCHHHccHHHHHHccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 6778899999999999994 222 233457777888887777 4777888889999999999999999888
Q ss_pred HHHHHHHHHhcH--HHHHhcccCch
Q 014834 344 GIISKIISTQGM--LAVYNSFSGED 366 (417)
Q Consensus 344 ~g~~~li~e~G~--~~l~~~vss~~ 366 (417)
++.++..+++. ..++|.+++|.
T Consensus 204 -~~~~~~~~~~~~~~~l~d~~~~~~ 227 (262)
T 2rcy_A 204 -GSVEMVKKSDQPVQQLKDNIVSPG 227 (262)
T ss_dssp -HHHHHHHHCSSCHHHHHHHHCCTT
T ss_pred -HHHHHHHhcCCCHHHHHHhcCCCC
Confidence 88888876554 56677777664
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-22 Score=191.13 Aligned_cols=217 Identities=16% Similarity=0.143 Sum_probs=171.3
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~ 190 (417)
|+||+|||+|+||.+++.+|.+. |++|.+++++.++..+.+.+.|+.. ..+++++++++|+|++++|+..
T Consensus 3 ~m~i~iiG~G~mG~~~a~~l~~~------g~~v~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~~D~Vi~~v~~~~ 72 (259)
T 2ahr_A 3 AMKIGIIGVGKMASAIIKGLKQT------PHELIISGSSLERSKEIAEQLALPY----AMSHQDLIDQVDLVILGIKPQL 72 (259)
T ss_dssp CCEEEEECCSHHHHHHHHHHTTS------SCEEEEECSSHHHHHHHHHHHTCCB----CSSHHHHHHTCSEEEECSCGGG
T ss_pred ccEEEEECCCHHHHHHHHHHHhC------CCeEEEECCCHHHHHHHHHHcCCEe----eCCHHHHHhcCCEEEEEeCcHh
Confidence 47999999999999999999988 8888887776544444444558764 5688899999999999999888
Q ss_pred HHHHHHHHHhcCCCCcEEEEe-cCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeecCCC
Q 014834 191 QADNYEKIFSCMKPNSILGLS-HGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (417)
Q Consensus 191 ~~~Vl~eI~~~lk~gaiLi~a-~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~dv 269 (417)
+.+++.++ ++|++|+.. .|++...+.+ .++.+.++++.+|+.|... ++|... +.+....
T Consensus 73 ~~~v~~~l----~~~~~vv~~~~~~~~~~l~~---~~~~~~~~v~~~p~~~~~~------------~~g~~~-i~~~~~~ 132 (259)
T 2ahr_A 73 FETVLKPL----HFKQPIISMAAGISLQRLAT---FVGQDLPLLRIMPNMNAQI------------LQSSTA-LTGNALV 132 (259)
T ss_dssp HHHHHTTS----CCCSCEEECCTTCCHHHHHH---HHCTTSCEEEEECCGGGGG------------TCEEEE-EEECTTC
T ss_pred HHHHHHHh----ccCCEEEEeCCCCCHHHHHH---hcCCCCCEEEEcCCchHHH------------cCceEE-EEcCCCC
Confidence 77777553 478877755 6887765554 3344568999999988876 467655 5556666
Q ss_pred CHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 014834 270 DGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHG----IVESLFRRFTENGMSEDLAYKNTVECITGI 345 (417)
Q Consensus 270 sgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA----~iea~~d~~v~~Gl~~e~A~~~~~q~~~~g 345 (417)
+.+..+.+..++..+|. ++.. .++.++..+.|+|+.|+ +++++.+.+++.|+++++++.++.+++. +
T Consensus 133 ~~~~~~~~~~ll~~~G~--~~~~------~~~~~d~~~al~g~~~~~~~~~~~~la~~~~~~Gl~~~~~~~~~~~~~~-~ 203 (259)
T 2ahr_A 133 SQELQARVRDLTDSFGS--TFDI------SEKDFDTFTALAGSSPAYIYLFIEALAKAGVKNGIPKAKALEIVTQTVL-A 203 (259)
T ss_dssp CHHHHHHHHHHHHTTEE--EEEC------CGGGHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-H
T ss_pred CHHHHHHHHHHHHhCCC--EEEe------cHHHccHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-H
Confidence 78899999999999993 3332 23457888889998777 4788889999999999999999999998 9
Q ss_pred HHHHHHHhc--HHHHHhcccCch
Q 014834 346 ISKIISTQG--MLAVYNSFSGED 366 (417)
Q Consensus 346 ~~~li~e~G--~~~l~~~vss~~ 366 (417)
+.+++.++| -..+++.+++|.
T Consensus 204 ~~~~~~~~~~~p~~l~~~~~~p~ 226 (259)
T 2ahr_A 204 SASNLKTSSQSPHDFIDAICSPG 226 (259)
T ss_dssp HHHHHHHSSSCHHHHHHHHCCTT
T ss_pred HHHHHHhcCCCHHHHHHhCCCCC
Confidence 999999888 577889998885
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.7e-22 Score=189.12 Aligned_cols=216 Identities=13% Similarity=0.161 Sum_probs=172.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC-cEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G-~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~ 190 (417)
+||+|||+|+||.+++.+|.+. | ++|.+++|+.++..+.+.+.|+.. ..+..+++ ++|+||+++|+..
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~------g~~~v~~~~r~~~~~~~~~~~~g~~~----~~~~~~~~-~~D~vi~~v~~~~ 69 (263)
T 1yqg_A 1 MNVYFLGGGNMAAAVAGGLVKQ------GGYRIYIANRGAEKRERLEKELGVET----SATLPELH-SDDVLILAVKPQD 69 (263)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------CSCEEEEECSSHHHHHHHHHHTCCEE----ESSCCCCC-TTSEEEECSCHHH
T ss_pred CEEEEECchHHHHHHHHHHHHC------CCCeEEEECCCHHHHHHHHHhcCCEE----eCCHHHHh-cCCEEEEEeCchh
Confidence 5899999999999999999999 9 899888776544444444458775 45777888 9999999999888
Q ss_pred HHHHHHHHHhcCCCCcEEEEe-cCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeecCCC
Q 014834 191 QADNYEKIFSCMKPNSILGLS-HGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (417)
Q Consensus 191 ~~~Vl~eI~~~lk~gaiLi~a-~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~dv 269 (417)
..++++++.+ + +++|++. +|+....+.+ .++++.++++.+|+.|... +.|... +.+....
T Consensus 70 ~~~v~~~l~~--~-~~ivv~~~~g~~~~~l~~---~~~~~~~~v~~~~~~~~~~------------~~g~~~-i~~~~~~ 130 (263)
T 1yqg_A 70 MEAACKNIRT--N-GALVLSVAAGLSVGTLSR---YLGGTRRIVRVMPNTPGKI------------GLGVSG-MYAEAEV 130 (263)
T ss_dssp HHHHHTTCCC--T-TCEEEECCTTCCHHHHHH---HTTSCCCEEEEECCGGGGG------------TCEEEE-EECCTTS
T ss_pred HHHHHHHhcc--C-CCEEEEecCCCCHHHHHH---HcCCCCcEEEEcCCHHHHH------------cCceEE-EEcCCCC
Confidence 8888877765 5 7887765 8887765554 4455678999999988776 467776 4556666
Q ss_pred CHHHHHHHHHHHHHhCCCceeccchhhhhh-hhccccchhhhchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 014834 270 DGRATNVALGWSVALGSPFTFATTLEQEYK-SDIFGERGILLGAVHG----IVESLFRRFTENGMSEDLAYKNTVECITG 344 (417)
Q Consensus 270 sgea~e~a~~L~~alG~~~~iettf~~e~~-~dl~ge~t~L~G~~pA----~iea~~d~~v~~Gl~~e~A~~~~~q~~~~ 344 (417)
+.+..+.+..++..+|.. + +.. ++.++..++++|+.|+ +++++.+.+++.|++++.++.++.+++.
T Consensus 131 ~~~~~~~~~~l~~~~g~~--~------~~~~~~~~~~~~al~g~~~~~~~~~~~~l~e~~~~~G~~~~~~~~~~~~~~~- 201 (263)
T 1yqg_A 131 SETDRRIADRIMKSVGLT--V------WLDDEEKMHGITGISGSGPAYVFYLLDALQNAAIRQGFDMAEARALSLATFK- 201 (263)
T ss_dssp CHHHHHHHHHHHHTTEEE--E------ECSSTTHHHHHHHHTTSHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHhCCCE--E------EeCChhhccHHHHHHccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-
Confidence 788999999999999853 1 222 4578889999998887 4667788889999999999999999988
Q ss_pred HHHHHHHHhc--HHHHHhcccCch
Q 014834 345 IISKIISTQG--MLAVYNSFSGED 366 (417)
Q Consensus 345 g~~~li~e~G--~~~l~~~vss~~ 366 (417)
+..+|+.++| ...+++.+++|.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~ 225 (263)
T 1yqg_A 202 GAVALAEQTGEDFEKLQKNVTSKG 225 (263)
T ss_dssp HHHHHHHHHCCCHHHHHHHTCCTT
T ss_pred HHHHHHHhcCCCHHHHHHhcCCCC
Confidence 9999999999 578899999884
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.8e-20 Score=178.59 Aligned_cols=211 Identities=14% Similarity=0.061 Sum_probs=153.2
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCc
Q 014834 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (417)
Q Consensus 111 mkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~ 189 (417)
|+||+|||+ |+||.+++++|.+. |++|++++|+.+ ..+...+.|+. ..+..++++++|+||+++|+.
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~------g~~V~~~~r~~~-~~~~~~~~g~~-----~~~~~~~~~~aDvVi~av~~~ 78 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDS------AHHLAAIEIAPE-GRDRLQGMGIP-----LTDGDGWIDEADVVVLALPDN 78 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHS------SSEEEEECCSHH-HHHHHHHTTCC-----CCCSSGGGGTCSEEEECSCHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC------CCEEEEEECCHH-HHHHHHhcCCC-----cCCHHHHhcCCCEEEEcCCch
Confidence 479999999 99999999999999 999987776533 34455557765 246778899999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEe-cCchhhhhhhcccCCCCCccEEEeccCCCchhH----HHHHhhcccccCCC------
Q 014834 190 AQADNYEKIFSCMKPNSILGLS-HGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSV----RRLYVQGKEINGAG------ 258 (417)
Q Consensus 190 ~~~~Vl~eI~~~lk~gaiLi~a-~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~v----r~ly~~G~~~~G~G------ 258 (417)
...++++++.+.++++++|++. .|..+..+.+ ..++.++++.||+.|+... ... +.|
T Consensus 79 ~~~~v~~~l~~~l~~~~ivv~~s~~~~~~~l~~----~~~~~~~v~~~P~~~~~~~~~~~~~~--------~~g~l~~~~ 146 (286)
T 3c24_A 79 IIEKVAEDIVPRVRPGTIVLILDAAAPYAGVMP----ERADITYFIGHPCHPPLFNDETDPAA--------RTDYHGGIA 146 (286)
T ss_dssp HHHHHHHHHGGGSCTTCEEEESCSHHHHHTCSC----CCTTSEEEEEEECCSCSSCCCCSHHH--------HTCSSSSSS
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCCchhHHHHh----hhCCCeEEecCCCCccccccccchhh--------ccCcccccc
Confidence 9999999999999999987754 4555544432 2346789999999987610 000 245
Q ss_pred -ceEEEeecCCCCHHHHHHHHHHHHHhCCC--ceeccchhhhhhhhccccchhhh-chHHH----HHHHHHHHHHHcCCC
Q 014834 259 -INSSFAVHQDVDGRATNVALGWSVALGSP--FTFATTLEQEYKSDIFGERGILL-GAVHG----IVESLFRRFTENGMS 330 (417)
Q Consensus 259 -v~~liav~~dvsgea~e~a~~L~~alG~~--~~iettf~~e~~~dl~ge~t~L~-G~~pA----~iea~~d~~v~~Gl~ 330 (417)
.+.+++ ....+++..+.+..++..+|.+ +++... +...|.++ .+++ |+.++ ++|++.+.+++.|++
T Consensus 147 ~~~~i~~-~~~~~~~~~~~v~~l~~~~G~~~~~~~~v~---~~~~~~~~--~a~~n~~~~~~~~~~~eal~~~~~~~Gl~ 220 (286)
T 3c24_A 147 KQAIVCA-LMQGPEEHYAIGADICETMWSPVTRTHRVT---TEQLAILE--PGLSEMVAMPFVETMVHAVDECADRYGID 220 (286)
T ss_dssp CEEEEEE-EEESCTHHHHHHHHHHHHHTCSEEEEEECC---HHHHHHHT--THHHHTTHHHHHHHHHHHHHHHHHHHCCC
T ss_pred cceeeee-ccCCCHHHHHHHHHHHHHhcCCcceEEEeC---hhHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 344333 2235678999999999999973 233332 22333332 3333 33334 678888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014834 331 EDLAYKNTVECITGIISKIIST 352 (417)
Q Consensus 331 ~e~A~~~~~q~~~~g~~~li~e 352 (417)
++++++++.+++. ++++++.+
T Consensus 221 ~~~~~~~~~~~~~-~~~~~~~~ 241 (286)
T 3c24_A 221 RQAALDFMIGHLN-VEIAMWFG 241 (286)
T ss_dssp HHHHHHHHHHHHH-HHHHHHTT
T ss_pred HHHHHHHHHHHHH-HHHHHHHh
Confidence 9999999999998 88877755
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=99.84 E-value=8.4e-21 Score=182.79 Aligned_cols=230 Identities=11% Similarity=0.029 Sum_probs=165.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~ 190 (417)
++||+|||+|+||.+++++|.+. +.|++|++++++ ....+.+.+.|... ....+++++++++|+||+++|+..
T Consensus 6 ~~~I~iIG~G~mG~~~a~~l~~~----g~~~~V~~~d~~-~~~~~~~~~~g~~~--~~~~~~~~~~~~aDvVilavp~~~ 78 (290)
T 3b1f_A 6 EKTIYIAGLGLIGASLALGIKRD----HPHYKIVGYNRS-DRSRDIALERGIVD--EATADFKVFAALADVIILAVPIKK 78 (290)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH----CTTSEEEEECSS-HHHHHHHHHTTSCS--EEESCTTTTGGGCSEEEECSCHHH
T ss_pred cceEEEEeeCHHHHHHHHHHHhC----CCCcEEEEEcCC-HHHHHHHHHcCCcc--cccCCHHHhhcCCCEEEEcCCHHH
Confidence 38999999999999999999987 123578776665 34455566677631 014577888999999999999999
Q ss_pred HHHHHHHHHhc-CCCCcEEEEecCchh---hhhhhcccCCCC-CccEEEeccC------CCchhHHHHHhhcccccCCCc
Q 014834 191 QADNYEKIFSC-MKPNSILGLSHGFLL---GHLQSIGLDFPK-NIGVIAVCPK------GMGPSVRRLYVQGKEINGAGI 259 (417)
Q Consensus 191 ~~~Vl~eI~~~-lk~gaiLi~a~G~~i---~~~~~~~i~~~~-dv~VI~v~Pn------tpg~~vr~ly~~G~~~~G~Gv 259 (417)
..++++++.++ ++++++|+++++... ..+.+ .+++ .++++..||. +|+....+ ...|.
T Consensus 79 ~~~v~~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~---~l~~~~~~~v~~~P~~g~~~~g~~~a~~~--------l~~g~ 147 (290)
T 3b1f_A 79 TIDFIKILADLDLKEDVIITDAGSTKYEIVRAAEY---YLKDKPVQFVGSHPMAGSHKSGAVAANVN--------LFENA 147 (290)
T ss_dssp HHHHHHHHHTSCCCTTCEEECCCSCHHHHHHHHHH---HHTTSSCEEEEEEEC-----CCTTSCCTT--------TTTTS
T ss_pred HHHHHHHHHhcCCCCCCEEEECCCCchHHHHHHHH---hccccCCEEEEeCCcCCCCcchHHHhhHH--------HhCCC
Confidence 99999999999 999999988877654 33332 2333 5678877886 44432111 12567
Q ss_pred eEEEeecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccc-hhhhchHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 014834 260 NSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGER-GILLGAVHGIVESLFRRFTENGMSEDLAYKNT 338 (417)
Q Consensus 260 ~~liav~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~-t~L~G~~pA~iea~~d~~v~~Gl~~e~A~~~~ 338 (417)
+..++++...+.++.+.+..++..+|.. ++.++.+ ..+.. +.++++.|.+.-++.+.+...|++++.++.++
T Consensus 148 ~~~~~~~~~~~~~~~~~v~~l~~~~G~~-~~~~~~~------~~d~~~a~~s~~~~~~a~~~~~~~~~~g~~~~~~~~la 220 (290)
T 3b1f_A 148 YYIFSPSCLTKPNTIPALQDLLSGLHAR-YVEIDAA------EHDCVTSQISHFPHIIASSLMKQAGDFSESHEMTKHFA 220 (290)
T ss_dssp EEEEEECTTCCTTHHHHHHHHTGGGCCE-EEECCHH------HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHCTHHHHHC
T ss_pred eEEEecCCCCCHHHHHHHHHHHHHcCCE-EEEcCHH------HHHHHHHHHhhHHHHHHHHHHHHHHhcccchhhHHhhc
Confidence 7778888777888999999999999963 3332211 12332 55677777766666666666788889999999
Q ss_pred HHHHHHHHHHHHHHhcHHHHHhcccCchh
Q 014834 339 VECITGIISKIISTQGMLAVYNSFSGEDK 367 (417)
Q Consensus 339 ~q~~~~g~~~li~e~G~~~l~~~vss~~~ 367 (417)
.+++. ++++|. ..--..++|.|++|..
T Consensus 221 ~~~~~-~~~rla-~~~p~~~~~~~~~n~~ 247 (290)
T 3b1f_A 221 AGGFR-DMTRIA-ESEPGMWTSILLTNQE 247 (290)
T ss_dssp CHHHH-HTTGGG-GSCHHHHHHHHHHSHH
T ss_pred cccHH-hhhhhh-cCCHHHHHHHHHHCHH
Confidence 99998 888777 3333666888887753
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.83 E-value=7.1e-21 Score=182.52 Aligned_cols=266 Identities=11% Similarity=0.032 Sum_probs=180.7
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcC-cCCEEEEccC
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLLLIS 187 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~-~ADIViLavp 187 (417)
|+||+|||+|+||.+++++|++. |+ +|++++++ ....+.+.+.|+.. ....+++++++ ++|+||+++|
T Consensus 1 m~~I~iIG~G~mG~~~a~~l~~~------g~~~~V~~~d~~-~~~~~~~~~~g~~~--~~~~~~~~~~~~~aDvVilavp 71 (281)
T 2g5c_A 1 MQNVLIVGVGFMGGSFAKSLRRS------GFKGKIYGYDIN-PESISKAVDLGIID--EGTTSIAKVEDFSPDFVMLSSP 71 (281)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHT------TCCSEEEEECSC-HHHHHHHHHTTSCS--EEESCGGGGGGTCCSEEEECSC
T ss_pred CcEEEEEecCHHHHHHHHHHHhc------CCCcEEEEEeCC-HHHHHHHHHCCCcc--cccCCHHHHhcCCCCEEEEcCC
Confidence 58999999999999999999998 87 88776665 34456677778741 11357888899 9999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecCchhh---hhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEe
Q 014834 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLG---HLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~gaiLi~a~G~~i~---~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~lia 264 (417)
+....++++++.++++++++|+++++.+.. .+.+ .+++ .++..||...... ..........+.|.+..++
T Consensus 72 ~~~~~~v~~~l~~~l~~~~iv~~~~~~~~~~~~~l~~---~l~~--~~v~~~p~~~~~~--~gp~~a~~~l~~g~~~~~~ 144 (281)
T 2g5c_A 72 VRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLEN---ILGK--RFVGGHPIAGTEK--SGVEYSLDNLYEGKKVILT 144 (281)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHH---HHGG--GEECEEEECCCSC--CSGGGCCSSTTTTCEEEEC
T ss_pred HHHHHHHHHHHHhhCCCCcEEEECCCCcHHHHHHHHH---hccc--cceeeccccCCcc--CChhhhhhHHhCCCCEEEe
Confidence 999999999999999999999888776532 2222 2232 2665566321100 0000001112357878788
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHHHH-HHHHHHHHHcCCCHHHHHHHHHHHHH
Q 014834 265 VHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIV-ESLFRRFTENGMSEDLAYKNTVECIT 343 (417)
Q Consensus 265 v~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA~i-ea~~d~~v~~Gl~~e~A~~~~~q~~~ 343 (417)
++...+.++.+.+..++..+|.. ++.++ + ...++.+.++|.+|+++ -++.+.+.+.|++++.++.++.+++.
T Consensus 145 ~~~~~~~~~~~~v~~l~~~~g~~-~~~~~---~---~~~d~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (281)
T 2g5c_A 145 PTKKTDKKRLKLVKRVWEDVGGV-VEYMS---P---ELHDYVFGVVSHLPHAVAFALVDTLIHMSTPEVDLFKYPGGGFK 217 (281)
T ss_dssp CCSSSCHHHHHHHHHHHHHTTCE-EEECC---H---HHHHHHHHHHTHHHHHHHHHHHHHHHHHCBTTBCGGGCCTTTGG
T ss_pred cCCCCCHHHHHHHHHHHHHcCCE-EEEcC---H---HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHhhccccHH
Confidence 88778889999999999999963 33322 1 12366688999999974 77888888889999999999999988
Q ss_pred HHHHHHHHHhcHHHHHhcccCchhhhhhhhhhccChhHHHHHHHHHHhhccChH--HHHHHHcCC
Q 014834 344 GIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSE--IRSVVLAGR 406 (417)
Q Consensus 344 ~g~~~li~e~G~~~l~~~vss~~~~~~~~~~~~~~~~~~~~m~~~~~~v~~g~~--~~~~~~~~~ 406 (417)
++++|.. .--..++|.|++|....... -+...+.|.++-+.|++|++ .++++.+.+
T Consensus 218 -~~~r~~~-~~p~~~~~~~~sn~~~~~~~-----l~~~~~~l~~~~~~i~~~d~~~l~~~~~~~~ 275 (281)
T 2g5c_A 218 -DFTRIAK-SDPIMWRDIFLENKENVMKA-----IEGFEKSLNHLKELIVREAEEELVEYLKEVK 275 (281)
T ss_dssp -GC---CC-SCHHHHHHHHHHTHHHHHHH-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHhHHhc-CCHHHHHHHHHHCHHHHHHH-----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777764 34577788887765321111 12233444556666666664 466655443
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.8e-19 Score=178.04 Aligned_cols=209 Identities=12% Similarity=0.028 Sum_probs=153.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhHHHHHHcCceecCCCcCCHHh-hcCcCCEEEEccCC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE-TISGSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~E-a~~~ADIViLavpd 188 (417)
+||+|||+|+||.++|++|++. |+ +|++++++ ....+.+.+.|+.. ....++++ ++++||+||+++|+
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~------G~~~~V~~~dr~-~~~~~~a~~~G~~~--~~~~~~~~~~~~~aDvVilavp~ 104 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRS------GFKGKIYGYDIN-PESISKAVDLGIID--EGTTSIAKVEDFSPDFVMLSSPV 104 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHT------TCCSEEEEECSC-HHHHHHHHHTTSCS--EEESCTTGGGGGCCSEEEECSCG
T ss_pred CEEEEEeeCHHHHHHHHHHHhC------CCCCEEEEEECC-HHHHHHHHHCCCcc--hhcCCHHHHhhccCCEEEEeCCH
Confidence 7999999999999999999999 98 88777665 44567778888741 12457888 89999999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEEEecCch---hhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEee
Q 014834 189 AAQADNYEKIFSCMKPNSILGLSHGFL---LGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (417)
Q Consensus 189 ~~~~~Vl~eI~~~lk~gaiLi~a~G~~---i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav 265 (417)
....++++++.++++++++|+++++++ +..+.+ .+|+ +++..||...... ..+...+.....|..+++++
T Consensus 105 ~~~~~vl~~l~~~l~~~~iv~d~~Svk~~~~~~~~~---~l~~--~~v~~hPm~G~e~--sG~~~A~~~Lf~g~~~il~~ 177 (314)
T 3ggo_A 105 RTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLEN---ILGK--RFVGGHPIAGTEK--SGVEYSLDNLYEGKKVILTP 177 (314)
T ss_dssp GGHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHH---HHGG--GEECEEECCCCCC--CSGGGCCTTTTTTCEEEECC
T ss_pred HHHHHHHHHHhhccCCCcEEEECCCCcHHHHHHHHH---hcCC--CEEecCcccCCcc--cchhhhhhhhhcCCEEEEEe
Confidence 999999999999999999999988875 233332 2233 7999999654221 00111111223567788888
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHHHH-HHHHHHHHHcCCCHHHHHHHHHHHHH
Q 014834 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIV-ESLFRRFTENGMSEDLAYKNTVECIT 343 (417)
Q Consensus 266 ~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA~i-ea~~d~~v~~Gl~~e~A~~~~~q~~~ 343 (417)
+...+.++.+.+..++..+|.. ++..+ .+..+..+.+.+.+|.++ -++.+.+.+.+.+.+++..++.....
T Consensus 178 ~~~~~~~~~~~v~~l~~~~G~~-v~~~~------~~~hD~~~a~~s~lph~~a~~l~~~~~~~~~~~~~~~~~a~~~fr 249 (314)
T 3ggo_A 178 TKKTDKKRLKLVKRVWEDVGGV-VEYMS------PELHDYVFGVVSHLPHAVAFALVDTLIHMSTPEVDLFKYPGGGFK 249 (314)
T ss_dssp CTTSCHHHHHHHHHHHHHTTCE-EEECC------HHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSCCGGGCCTTTTT
T ss_pred CCCCCHHHHHHHHHHHHHcCCE-EEEcC------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHhhccccHH
Confidence 8888899999999999999963 33332 223556688888999975 55667777777777667666655443
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-18 Score=169.75 Aligned_cols=208 Identities=12% Similarity=0.074 Sum_probs=152.6
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 014834 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~ 190 (417)
+||+||| +|+||.++|++|++. |++|++++++.. .+..+++++||+||+++|+..
T Consensus 22 ~~I~iIGg~G~mG~~la~~l~~~------G~~V~~~~~~~~------------------~~~~~~~~~aDvVilavp~~~ 77 (298)
T 2pv7_A 22 HKIVIVGGYGKLGGLFARYLRAS------GYPISILDREDW------------------AVAESILANADVVIVSVPINL 77 (298)
T ss_dssp CCEEEETTTSHHHHHHHHHHHTT------TCCEEEECTTCG------------------GGHHHHHTTCSEEEECSCGGG
T ss_pred CEEEEEcCCCHHHHHHHHHHHhC------CCeEEEEECCcc------------------cCHHHHhcCCCEEEEeCCHHH
Confidence 7999999 999999999999999 999888776432 145678899999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeecCCCC
Q 014834 191 QADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (417)
Q Consensus 191 ~~~Vl~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~dvs 270 (417)
..++++++.++++++++|++++|++....+......+ .+++..||.. ++.. . ...|.+.+++++. +
T Consensus 78 ~~~vl~~l~~~l~~~~iv~~~~svk~~~~~~~~~~~~--~~~v~~hP~~-g~~~-----~----~~~g~~~~l~~~~--~ 143 (298)
T 2pv7_A 78 TLETIERLKPYLTENMLLADLTSVKREPLAKMLEVHT--GAVLGLHPMF-GADI-----A----SMAKQVVVRCDGR--F 143 (298)
T ss_dssp HHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHHCS--SEEEEEEECS-CTTC-----S----CCTTCEEEEEEEE--C
T ss_pred HHHHHHHHHhhcCCCcEEEECCCCCcHHHHHHHHhcC--CCEEeeCCCC-CCCc-----h----hhcCCeEEEecCC--C
Confidence 9999999999999999999999886432221001122 4688888842 2220 0 1245566677655 6
Q ss_pred HHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHHHH-HHHHHHHHHcCCCHHHHHHHHHHHHHHH----
Q 014834 271 GRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIV-ESLFRRFTENGMSEDLAYKNTVECITGI---- 345 (417)
Q Consensus 271 gea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA~i-ea~~d~~v~~Gl~~e~A~~~~~q~~~~g---- 345 (417)
.++.+.+..++..+|.. ++.++ .+..+..+.+++++|+++ -++.+.+.+.|++++++++++.+... +
T Consensus 144 ~~~~~~v~~l~~~~G~~-~~~~~------~~~~d~~~a~~~~~p~~~a~~l~~~l~~~g~~~~~~~~la~~~f~-~~~~~ 215 (298)
T 2pv7_A 144 PERYEWLLEQIQIWGAK-IYQTN------ATEHDHNMTYIQALRHFSTFANGLHLSKQPINLANLLALSSPIYR-LELAM 215 (298)
T ss_dssp GGGTHHHHHHHHHTTCE-EEECC------HHHHHHHHHHHTHHHHHHHHHHHHHHTTSSCCHHHHHHTCCHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHcCCE-EEECC------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhcCHHHH-HHHHH
Confidence 67889999999999973 33222 222466688999999974 56777777899999999999999998 6
Q ss_pred HHHHHHHhcHHHHHhcccCch
Q 014834 346 ISKIISTQGMLAVYNSFSGED 366 (417)
Q Consensus 346 ~~~li~e~G~~~l~~~vss~~ 366 (417)
++++. ..--..++|.+++|.
T Consensus 216 ~~ria-~~~p~~~~di~~sn~ 235 (298)
T 2pv7_A 216 IGRLF-AQDAELYADIIMDKS 235 (298)
T ss_dssp HHHHH-TSCHHHHHHHHC---
T ss_pred HHHHh-cCCHHHHHHHHHHCH
Confidence 55554 334477788888764
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.79 E-value=5.2e-18 Score=162.18 Aligned_cols=231 Identities=12% Similarity=0.042 Sum_probs=163.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~~ 191 (417)
+||+|||+|+||.+++++|.+. |++|++++++. ...+.+.+.|+.. ....+++++ +++|+||+++|++..
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~------g~~V~~~~~~~-~~~~~~~~~g~~~--~~~~~~~~~-~~~D~vi~av~~~~~ 70 (279)
T 2f1k_A 1 MKIGVVGLGLIGASLAGDLRRR------GHYLIGVSRQQ-STCEKAVERQLVD--EAGQDLSLL-QTAKIIFLCTPIQLI 70 (279)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCH-HHHHHHHHTTSCS--EEESCGGGG-TTCSEEEECSCHHHH
T ss_pred CEEEEEcCcHHHHHHHHHHHHC------CCEEEEEECCH-HHHHHHHhCCCCc--cccCCHHHh-CCCCEEEEECCHHHH
Confidence 5899999999999999999998 99988776653 3445556677631 114578888 999999999999998
Q ss_pred HHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeecCCCCH
Q 014834 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDG 271 (417)
Q Consensus 192 ~~Vl~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~dvsg 271 (417)
.++++++.++++++++|+.+++++....+...-.++ +++..||-.. ... ............|.+..+++....+.
T Consensus 71 ~~~~~~l~~~~~~~~~vv~~~~~~~~~~~~~~~~~~---~~~~~~p~~g-~~~-~gp~~a~~~~~~g~~~~~~~~~~~~~ 145 (279)
T 2f1k_A 71 LPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLWS---GFIGGHPMAG-TAA-QGIDGAEENLFVNAPYVLTPTEYTDP 145 (279)
T ss_dssp HHHHHHHGGGSCTTCEEEECCSCCHHHHHHHHHHST---TCEEEEECCC-CSC-SSGGGCCTTTTTTCEEEEEECTTCCH
T ss_pred HHHHHHHHhhCCCCCEEEECCCCcHHHHHHHHHHhC---CEeecCcccC-Ccc-CCHHHHhHHHhCCCcEEEecCCCCCH
Confidence 999999999999999988887776432221001222 5666666431 010 00000001112455666777766788
Q ss_pred HHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHHH-HHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHH
Q 014834 272 RATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGI-VESLFRRFTENGMS--EDLAYKNTVECITGIISK 348 (417)
Q Consensus 272 ea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA~-iea~~d~~v~~Gl~--~e~A~~~~~q~~~~g~~~ 348 (417)
+..+.+..++..+|.. ++.+ .....++.+.+++.+|++ ..++.+.+++.|++ ++.++.++.+.+. ++++
T Consensus 146 ~~~~~v~~l~~~~g~~-~~~~------~~~~~~~~~~~~~~~p~~i~~al~~~~~~~~~~~~~~~~~~l~~~~~~-~~~r 217 (279)
T 2f1k_A 146 EQLACLRSVLEPLGVK-IYLC------TPADHDQAVAWISHLPVMVSAALIQACAGEKDGDILKLAQNLASSGFR-DTSR 217 (279)
T ss_dssp HHHHHHHHHHGGGTCE-EEEC------CHHHHHHHHHHHTHHHHHHHHHHHHHHHTCSCHHHHHHHHHHCCHHHH-HHHT
T ss_pred HHHHHHHHHHHHcCCE-EEEc------CHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccccchhHHHhhcCCccc-chhc
Confidence 9999999999999963 2222 222356668889998774 55788889999998 8999999999998 8887
Q ss_pred HHHHhcHHHHHhcccCch
Q 014834 349 IISTQGMLAVYNSFSGED 366 (417)
Q Consensus 349 li~e~G~~~l~~~vss~~ 366 (417)
+. ..--..++|.|++|.
T Consensus 218 ~~-~~~p~~~~~~~~s~~ 234 (279)
T 2f1k_A 218 VG-GGNPELGTMMATYNQ 234 (279)
T ss_dssp GG-GSCHHHHHHHHHHSH
T ss_pred cc-CCCHHHHHHHHHHhH
Confidence 76 334477888888774
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-18 Score=173.79 Aligned_cols=204 Identities=12% Similarity=0.077 Sum_probs=147.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCc----CCEEEEccC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG----SDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~----ADIViLavp 187 (417)
+||+|||+|+||.++|++|++. |++|++++++ ....+.+.+.|+.. ..++++++++ +|+||+++|
T Consensus 9 ~kIgIIG~G~mG~slA~~L~~~------G~~V~~~dr~-~~~~~~a~~~G~~~----~~~~~e~~~~a~~~aDlVilavP 77 (341)
T 3ktd_A 9 RPVCILGLGLIGGSLLRDLHAA------NHSVFGYNRS-RSGAKSAVDEGFDV----SADLEATLQRAAAEDALIVLAVP 77 (341)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT------TCCEEEECSC-HHHHHHHHHTTCCE----ESCHHHHHHHHHHTTCEEEECSC
T ss_pred CEEEEEeecHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHcCCee----eCCHHHHHHhcccCCCEEEEeCC
Confidence 7899999999999999999999 9998877765 44567788889864 5678877764 799999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecCchhh---hhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEe
Q 014834 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLG---HLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~gaiLi~a~G~~i~---~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~lia 264 (417)
+....++++++.++ +++++|+++++++.. .+.. .++ +..++..||..... ...+..+.....+|.+++++
T Consensus 78 ~~~~~~vl~~l~~~-~~~~iv~Dv~Svk~~i~~~~~~---~~~-~~~~v~~HPmaG~e--~sG~~aa~~~Lf~g~~~ilt 150 (341)
T 3ktd_A 78 MTAIDSLLDAVHTH-APNNGFTDVVSVKTAVYDAVKA---RNM-QHRYVGSHPMAGTA--NSGWSASMDGLFKRAVWVVT 150 (341)
T ss_dssp HHHHHHHHHHHHHH-CTTCCEEECCSCSHHHHHHHHH---TTC-GGGEECEEECCSCC---CCGGGCCSSTTTTCEEEEC
T ss_pred HHHHHHHHHHHHcc-CCCCEEEEcCCCChHHHHHHHH---hCC-CCcEecCCcccccc--ccchhhhhhHHhcCCeEEEE
Confidence 99888999999886 899999999988643 3322 233 57899999954221 11222333344567788899
Q ss_pred ecCCCCHH--------HHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHHHHHH-HHHHHHHcCCCHHHHH
Q 014834 265 VHQDVDGR--------ATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVES-LFRRFTENGMSEDLAY 335 (417)
Q Consensus 265 v~~dvsge--------a~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA~iea-~~d~~v~~Gl~~e~A~ 335 (417)
++...+.+ +++.++.++..+|+. ++..+ .+..|..+++++.+|.++-. +.+.+.+ .++.+.
T Consensus 151 p~~~~~~e~~~~~~~~~~~~v~~l~~~~Ga~-v~~~~------~~~HD~~~A~vshlPh~ia~aL~~~~~~---~~~~~~ 220 (341)
T 3ktd_A 151 FDQLFDGTDINSTWISIWKDVVQMALAVGAE-VVPSR------VGPHDAAAARVSHLTHILAETLAIVGDN---GGALSL 220 (341)
T ss_dssp CGGGTSSCCCCHHHHHHHHHHHHHHHHTTCE-EEECC------HHHHHHHHHHHTHHHHHHHHHHHHHHHH---THHHHH
T ss_pred eCCCCChhhhccchHHHHHHHHHHHHHcCCE-EEEeC------HHHHHHHHHHHhHHHHHHHHHHHHHhhc---chHHHH
Confidence 88777767 899999999999963 33333 33456668899999996544 3444322 245566
Q ss_pred HHHHHHHH
Q 014834 336 KNTVECIT 343 (417)
Q Consensus 336 ~~~~q~~~ 343 (417)
.++.....
T Consensus 221 ~laa~gfr 228 (341)
T 3ktd_A 221 SLAAGSYR 228 (341)
T ss_dssp HHCCHHHH
T ss_pred HHccccHH
Confidence 55555444
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.5e-17 Score=158.66 Aligned_cols=213 Identities=12% Similarity=0.027 Sum_probs=137.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEE-EEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV-KVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~V-iVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~ 190 (417)
+||+|||+|+||.+++++|.+. ++| .+++++.++..+.+.+.|. . ..+++++++++|+||+++|++.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~-------~~v~~v~~~~~~~~~~~~~~~g~-~----~~~~~~~~~~~DvVilav~~~~ 70 (276)
T 2i76_A 3 LVLNFVGTGTLTRFFLECLKDR-------YEIGYILSRSIDRARNLAEVYGG-K----AATLEKHPELNGVVFVIVPDRY 70 (276)
T ss_dssp -CCEEESCCHHHHHHHHTTC-----------CCCEECSSHHHHHHHHHHTCC-C----CCSSCCCCC---CEEECSCTTT
T ss_pred ceEEEEeCCHHHHHHHHHHHHc-------CcEEEEEeCCHHHHHHHHHHcCC-c----cCCHHHHHhcCCEEEEeCChHH
Confidence 6899999999999999998753 355 3666654443444445565 3 5677888899999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEec-CchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeecCCC
Q 014834 191 QADNYEKIFSCMKPNSILGLSH-GFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (417)
Q Consensus 191 ~~~Vl~eI~~~lk~gaiLi~a~-G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~dv 269 (417)
..+++.++. +++++|+..+ +++...++. ........+..+|++|.... . ..+++..++.
T Consensus 71 ~~~v~~~l~---~~~~ivi~~s~~~~~~~l~~---~~~~~~~p~~~~~g~~~~~~--~--------~~~~~~~~~~---- 130 (276)
T 2i76_A 71 IKTVANHLN---LGDAVLVHCSGFLSSEIFKK---SGRASIHPNFSFSSLEKALE--M--------KDQIVFGLEG---- 130 (276)
T ss_dssp HHHHHTTTC---CSSCCEEECCSSSCGGGGCS---SSEEEEEECSCC--CTTGGG--C--------GGGCCEEECC----
T ss_pred HHHHHHHhc---cCCCEEEECCCCCcHHHHHH---hhccccchhhhcCCCchhHH--H--------hCCCeEEEEe----
Confidence 888887764 6788877655 555544432 11000011123455444330 0 1346554443
Q ss_pred CHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Q 014834 270 DGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHG-IVESLFRRFTENGMSEDLAYKNTVECITGIISK 348 (417)
Q Consensus 270 sgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA-~iea~~d~~v~~Gl~~e~A~~~~~q~~~~g~~~ 348 (417)
+.+..+.++.++..+|.. ++... +...+.++..+++++..+. ++..+.+.+++.|+++++|+ ..+.+. +.++
T Consensus 131 ~~~~~~~~~~l~~~lG~~-~~~v~---~~~~~~~~~~~~l~~n~~~~~~~~a~~~~~~~Gl~~~~a~--~~~l~~-~~~~ 203 (276)
T 2i76_A 131 DERGLPIVKKIAEEISGK-YFVIP---SEKKKAYHLAAVIASNFPVALAYLSKRIYTLLGLDEPELL--IHTLMK-GVAD 203 (276)
T ss_dssp CTTTHHHHHHHHHHHCSC-EEECC---GGGHHHHHHHHHHHHTTHHHHHHHHHHHHHTTTCSCHHHH--HHHHHH-HHHH
T ss_pred ChHHHHHHHHHHHHhCCC-EEEEC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH--HHHHHH-HHHH
Confidence 335688899999999963 23222 2233457777788877666 34445577788999999987 778888 9999
Q ss_pred HHHHhcHHHHHhcccCch
Q 014834 349 IISTQGMLAVYNSFSGED 366 (417)
Q Consensus 349 li~e~G~~~l~~~vss~~ 366 (417)
++.+.| -++.+++|.
T Consensus 204 ~~~~~g---p~~~~tgP~ 218 (276)
T 2i76_A 204 NIKKMR---VECSLTGPV 218 (276)
T ss_dssp HHHHSC---GGGGCCSHH
T ss_pred HHHhcC---hHhhCCCCc
Confidence 999999 389999985
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.68 E-value=7.9e-16 Score=146.23 Aligned_cols=210 Identities=12% Similarity=0.109 Sum_probs=142.5
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcE-EEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~-ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
+.+ +||+|||+|+||.+++..|.+. |++ |.+++|+.++..+.+...|+.. ..+++++++++|+||+++
T Consensus 8 ~~~-m~i~iiG~G~mG~~~a~~l~~~------g~~~v~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~~Dvvi~av 76 (266)
T 3d1l_A 8 IED-TPIVLIGAGNLATNLAKALYRK------GFRIVQVYSRTEESARELAQKVEAEY----TTDLAEVNPYAKLYIVSL 76 (266)
T ss_dssp GGG-CCEEEECCSHHHHHHHHHHHHH------TCCEEEEECSSHHHHHHHHHHTTCEE----ESCGGGSCSCCSEEEECC
T ss_pred CCC-CeEEEEcCCHHHHHHHHHHHHC------CCeEEEEEeCCHHHHHHHHHHcCCce----eCCHHHHhcCCCEEEEec
Confidence 445 7899999999999999999998 987 6777666444444444458765 568889999999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEe-cCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEee
Q 014834 187 SDAAQADNYEKIFSCMKPNSILGLS-HGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiLi~a-~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav 265 (417)
|+..+.++++++.+.++++++|++. .|+....+.+ .++. .. ..||-.|....+ . ....+.+.++
T Consensus 77 ~~~~~~~v~~~l~~~~~~~~ivv~~s~~~~~~~l~~---~~~~-~~--~~~~~~~~~g~~-~------~~~~~~~~~v-- 141 (266)
T 3d1l_A 77 KDSAFAELLQGIVEGKREEALMVHTAGSIPMNVWEG---HVPH-YG--VFYPMQTFSKQR-E------VDFKEIPFFI-- 141 (266)
T ss_dssp CHHHHHHHHHHHHTTCCTTCEEEECCTTSCGGGSTT---TCSS-EE--EEEECCCC---C-C------CCCTTCCEEE--
T ss_pred CHHHHHHHHHHHHhhcCCCcEEEECCCCCchHHHHH---HHHh-cc--CcCCceecCCCc-h------hhcCCCeEEE--
Confidence 9998889999999999999987754 5665544432 2222 11 245544411100 0 0023455544
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHH
Q 014834 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESLFRRF-TENGMSEDLAYKNTVECITG 344 (417)
Q Consensus 266 ~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA~iea~~d~~-v~~Gl~~e~A~~~~~q~~~~ 344 (417)
...+.+..+.+..++..+|.. ++... +.....++..+.+++..++++-++.+.+ .+.|+++++++.++.+++.
T Consensus 142 -~~~~~~~~~~~~~l~~~~g~~-~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~eal~~~~Gl~~~~~~~l~~~~~~- 215 (266)
T 3d1l_A 142 -EASSTEDAAFLKAIASTLSNR-VYDAD---SEQRKSLHLAAVFTCNFTNHMYALAAELLKKYNLPFDVMLPLIDETAR- 215 (266)
T ss_dssp -EESSHHHHHHHHHHHHTTCSC-EEECC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGGHHHHHHHHH-
T ss_pred -ecCCHHHHHHHHHHHHhcCCc-EEEeC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-
Confidence 223567889999999999963 22221 1111347777888888786544444443 4799999999999988887
Q ss_pred HHHHH
Q 014834 345 IISKI 349 (417)
Q Consensus 345 g~~~l 349 (417)
++.++
T Consensus 216 ~~~~~ 220 (266)
T 3d1l_A 216 KVHEL 220 (266)
T ss_dssp HHHHS
T ss_pred HHHhc
Confidence 65544
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.4e-14 Score=138.48 Aligned_cols=213 Identities=14% Similarity=0.096 Sum_probs=143.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHc-----------C--------------ceec
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-----------G--------------FTEE 165 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~-----------G--------------~~~~ 165 (417)
++||+|||+|+||.++|+.|... |++|++++++.++ .+.+.+. | +..
T Consensus 4 ~~kV~VIGaG~mG~~iA~~la~~------G~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~- 75 (283)
T 4e12_A 4 ITNVTVLGTGVLGSQIAFQTAFH------GFAVTAYDINTDA-LDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY- 75 (283)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSHHH-HHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE-
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE-
Confidence 48999999999999999999999 9999888776433 3333322 2 232
Q ss_pred CCCcCCHHhhcCcCCEEEEccCCc--hHHHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCch
Q 014834 166 NGTLGDIYETISGSDLVLLLISDA--AQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGP 242 (417)
Q Consensus 166 ~~~~~s~~Ea~~~ADIViLavpd~--~~~~Vl~eI~~~lk~gaiLi-~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~ 242 (417)
..++++++++||+||+++|+. ...+++.++.+.++++++|+ .++++.+..+.. .++...+++.+||..|..
T Consensus 76 ---~~~~~~~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~~~la~---~~~~~~~~ig~h~~~p~~ 149 (283)
T 4e12_A 76 ---SDDLAQAVKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSDLVG---YTGRGDKFLALHFANHVW 149 (283)
T ss_dssp ---ESCHHHHTTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHH---HHSCGGGEEEEEECSSTT
T ss_pred ---eCCHHHHhccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCCcceEEEccCCCcc
Confidence 467888999999999999998 55678999999999999877 677887765543 223345899999998866
Q ss_pred hHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHHHHHHHHH
Q 014834 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESLFR 322 (417)
Q Consensus 243 ~vr~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA~iea~~d 322 (417)
. +.. ..++++...+.+..+.+..++..+|...+. .. .+.. -| +..-.+.+++..++.
T Consensus 150 ~------------~~l--vevv~~~~t~~~~~~~~~~l~~~~g~~~v~-v~--~~~~--g~----i~nr~~~~~~~ea~~ 206 (283)
T 4e12_A 150 V------------NNT--AEVMGTTKTDPEVYQQVVEFASAIGMVPIE-LK--KEKA--GY----VLNSLLVPLLDAAAE 206 (283)
T ss_dssp T------------SCE--EEEEECTTSCHHHHHHHHHHHHHTTCEEEE-CS--SCCT--TT----THHHHHHHHHHHHHH
T ss_pred c------------Cce--EEEEeCCCCCHHHHHHHHHHHHHcCCEEEE-Ee--cCCC--CE----EehHHHHHHHHHHHH
Confidence 5 122 235667778889999999999999974221 10 0111 11 122233345555566
Q ss_pred HHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHhcHHHHHh
Q 014834 323 RFTENGMSEDLAYKNTVECIT--GIISKIISTQGMLAVYN 360 (417)
Q Consensus 323 ~~v~~Gl~~e~A~~~~~q~~~--~g~~~li~e~G~~~l~~ 360 (417)
.+.+.|.++++..+..-...- -|--.+.-..|++..++
T Consensus 207 l~~~g~~~~~~id~~~~~~~g~~~Gp~~~~D~~Gld~~~~ 246 (283)
T 4e12_A 207 LLVDGIADPETIDKTWRIGTGAPKGPFEIFDIVGLTTAYN 246 (283)
T ss_dssp HHHTTSCCHHHHHHHHHHHHCCSSCHHHHHHHHCHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHhccCCCcCHHHHHHhccHHHHHH
Confidence 666677899875553322110 14445555567655444
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.2e-15 Score=140.90 Aligned_cols=161 Identities=19% Similarity=0.158 Sum_probs=111.4
Q ss_pred chhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChh--------------hHHHHHHcCceecCCCc
Q 014834 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR--------------SFAEARAAGFTEENGTL 169 (417)
Q Consensus 104 ~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~--------------s~~~A~~~G~~~~~~~~ 169 (417)
....+.+ +||||||+|+||.++|++|.+. |++|++++|+.++ ..+.+.+.|... .
T Consensus 13 ~~~~~~~-~kIgiIG~G~mG~alA~~L~~~------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 81 (245)
T 3dtt_A 13 ENLYFQG-MKIAVLGTGTVGRTMAGALADL------GHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVH----L 81 (245)
T ss_dssp ------C-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCE----E
T ss_pred cccccCC-CeEEEECCCHHHHHHHHHHHHC------CCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCcee----c
Confidence 3477888 9999999999999999999999 9999988887543 122233334433 5
Q ss_pred CCHHhhcCcCCEEEEccCCchHHHHHHHH-HhcCCCCcEEEEec-Cc----------------h-hhhhhhcccCCCCCc
Q 014834 170 GDIYETISGSDLVLLLISDAAQADNYEKI-FSCMKPNSILGLSH-GF----------------L-LGHLQSIGLDFPKNI 230 (417)
Q Consensus 170 ~s~~Ea~~~ADIViLavpd~~~~~Vl~eI-~~~lk~gaiLi~a~-G~----------------~-i~~~~~~~i~~~~dv 230 (417)
.++.|++++||+||+++|+..+.+++.++ .+.+ +|++|++++ |+ . ...+++ .+| +.
T Consensus 82 ~~~~e~~~~aDvVilavp~~~~~~~~~~i~~~~l-~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~---~l~-~~ 156 (245)
T 3dtt_A 82 AAFADVAAGAELVVNATEGASSIAALTAAGAENL-AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQR---TFP-EA 156 (245)
T ss_dssp EEHHHHHHHCSEEEECSCGGGHHHHHHHHCHHHH-TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHH---HST-TS
T ss_pred cCHHHHHhcCCEEEEccCcHHHHHHHHHhhhhhc-CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHH---HCC-CC
Confidence 67899999999999999999999999888 7777 888887655 32 1 223333 344 36
Q ss_pred cEEEeccCCCchhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 231 ~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~ 287 (417)
+|++.+|+.++++....-.. -.|-..++.... +.++.+.+..++..+|..
T Consensus 157 ~vv~~~~~~~a~v~~~~~~a-----~~g~~~~~v~g~--d~~~~~~v~~ll~~~g~~ 206 (245)
T 3dtt_A 157 KVVKTLNTMNASLMVDPGRA-----AGGDHSVFVSGN--DAAAKAEVATLLKSLGHQ 206 (245)
T ss_dssp EEEECSTTSCHHHHHCGGGT-----GGGCCCEEEECS--CHHHHHHHHHHHHHTTCC
T ss_pred eEEEeecccCHHHhcCcccc-----CCCCeeEEEECC--CHHHHHHHHHHHHHcCCC
Confidence 89999999999884321100 012222222122 578999999999999963
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.3e-16 Score=162.20 Aligned_cols=103 Identities=18% Similarity=0.351 Sum_probs=90.3
Q ss_pred hccccchhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhcccCchhhhhhhhhhccChh
Q 014834 301 DIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYP 380 (417)
Q Consensus 301 dl~ge~t~L~G~~pA~iea~~d~~v~~Gl~~e~A~~~~~q~~~~g~~~li~e~G~~~l~~~vss~~~~~~~~~~~~~~~~ 380 (417)
..|+..+.++..+.|++++.||++|++|+.||.||++|+|+++ +|+++|+++|+.+|++.|| ||+|||+|.. +..
T Consensus 353 e~f~~Gilmva~v~a~ve~~FEtlveaGy~pE~AYfE~LHElk-LIvdli~e~gl~~M~~sIS--dTAEYG~yl~--~~~ 427 (491)
T 3ulk_A 353 EYFDKGVLMIAMVKAGVELAFETMVDSGIIEESAYYESLHELP-LIANTIARKRLYEMNVVIS--DTAEYGNYLF--SYA 427 (491)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHTTGGGHH-HHHHHHHHHHHHHHHHHSC--HHHHHHHHHH--HHH
T ss_pred cchhhhhHHHHHHHHHHhhhHHHHHHcCCcHHHHHHHHHhHHH-HHHHHHHHhhHHHHHhHhh--hHhhhcCEEe--cHH
Confidence 3466665558889999999999999999999999999999999 9999999999999999999 8999999943 256
Q ss_pred HHHHHHHHHHhhccChHHHHHHHcCCccc
Q 014834 381 CMEILYECYEDVAAGSEIRSVVLAGRRFY 409 (417)
Q Consensus 381 ~~~~m~~~~~~v~~g~~~~~~~~~~~~~~ 409 (417)
++..|++++++||+|.|+|++ .+++...
T Consensus 428 ~k~~mk~~l~~Iq~g~fak~~-~e~~~g~ 455 (491)
T 3ulk_A 428 CVPLLKPFMAELQPGDLGKAI-PEGAVDN 455 (491)
T ss_dssp HHHHTHHHHHTCCTTSSSSCC-CCCCCCH
T ss_pred HHHHHHHHHHHccCChHhhhh-hhccCCC
Confidence 778999999999999999984 5655443
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=4.9e-15 Score=145.69 Aligned_cols=197 Identities=18% Similarity=0.229 Sum_probs=124.5
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~ 190 (417)
|+||||||+|+||.+||+||.+. |++|++++|+.++ .+...+.|... ..++.|+++++|+||+|+|+..
T Consensus 3 M~kIgfIGlG~MG~~mA~~L~~~------G~~v~v~dr~~~~-~~~l~~~Ga~~----a~s~~e~~~~~dvv~~~l~~~~ 71 (300)
T 3obb_A 3 MKQIAFIGLGHMGAPMATNLLKA------GYLLNVFDLVQSA-VDGLVAAGASA----ARSARDAVQGADVVISMLPASQ 71 (300)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHT------TCEEEEECSSHHH-HHHHHHTTCEE----CSSHHHHHTTCSEEEECCSCHH
T ss_pred cCEEEEeeehHHHHHHHHHHHhC------CCeEEEEcCCHHH-HHHHHHcCCEE----cCCHHHHHhcCCceeecCCchH
Confidence 78999999999999999999999 9999999887544 55566778886 7899999999999999999887
Q ss_pred HH-HHHHH---HHhcCCCCcEEEEecCchhh---hhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEE
Q 014834 191 QA-DNYEK---IFSCMKPNSILGLSHGFLLG---HLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (417)
Q Consensus 191 ~~-~Vl~e---I~~~lk~gaiLi~a~G~~i~---~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~li 263 (417)
+. +|+.. +.+.+++|++|++++-.... .+.+ ..-..++.++- +|-.=+.. .-++ |--. +
T Consensus 72 ~v~~V~~~~~g~~~~~~~g~iiId~sT~~p~~~~~~a~--~~~~~G~~~lD-aPVsGg~~---~A~~-------G~L~-i 137 (300)
T 3obb_A 72 HVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHA--AARERGLAMLD-APVSGGTA---GAAA-------GTLT-F 137 (300)
T ss_dssp HHHHHHHSSSSSTTSCCC-CEEEECSCCCHHHHHHHHH--HHHTTTCEEEE-CCEESCHH---HHHH-------TCEE-E
T ss_pred HHHHHHhchhhhhhcCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCEEEe-cCCCCCHH---HHHh-------CCEE-E
Confidence 75 67753 78899999999988766432 2211 01124566653 33111111 1122 2222 2
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCceeccc-hhhhhhhhccccchhhhchHHHHHHHHHHHHHHcCCCHHHHHHH
Q 014834 264 AVHQDVDGRATNVALGWSVALGSPFTFATT-LEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKN 337 (417)
Q Consensus 264 av~~dvsgea~e~a~~L~~alG~~~~iett-f~~e~~~dl~ge~t~L~G~~pA~iea~~d~~v~~Gl~~e~A~~~ 337 (417)
-+.. +.++.+.++.++..+|.. ++..- .-.=...++ --+.++.+...++.|+ +..+.+.|++++..++.
T Consensus 138 mvGG--~~~~~~~~~p~l~~~g~~-i~~~G~~G~g~~~Kl-~~N~l~~~~~~a~aEa-~~la~~~Gld~~~~~~v 207 (300)
T 3obb_A 138 MVGG--DAEALEKARPLFEAMGRN-IFHAGPDGAGQVAKV-CNNQLLAVLMIGTAEA-MALGVANGLEAKVLAEI 207 (300)
T ss_dssp EEES--CHHHHHHHHHHHHHHEEE-EEEEESTTHHHHHHH-HHHHHHHHHHHHHHHH-HHHHHHTTCCHHHHHHH
T ss_pred EEeC--CHHHHHHHHHHHHHhCCC-EEEeCCccHHHHHHH-HHHHHHHHHHHHHHHH-HHHHHhcCCCHHHHHHH
Confidence 2344 468999999999999964 11100 000000000 0011112222223333 34668999999877663
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.7e-14 Score=134.63 Aligned_cols=154 Identities=14% Similarity=0.102 Sum_probs=112.1
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEE-EecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCc
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViV-g~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~ 189 (417)
|+||+|||+|+||.++|++|.+. |++|++ ++|+.++..+.+.+.|... ..+..++++++|+||+++|++
T Consensus 23 mmkI~IIG~G~mG~~la~~l~~~------g~~V~~v~~r~~~~~~~l~~~~g~~~----~~~~~~~~~~aDvVilavp~~ 92 (220)
T 4huj_A 23 MTTYAIIGAGAIGSALAERFTAA------QIPAIIANSRGPASLSSVTDRFGASV----KAVELKDALQADVVILAVPYD 92 (220)
T ss_dssp SCCEEEEECHHHHHHHHHHHHHT------TCCEEEECTTCGGGGHHHHHHHTTTE----EECCHHHHTTSSEEEEESCGG
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCEEEEEECCCHHHHHHHHHHhCCCc----ccChHHHHhcCCEEEEeCChH
Confidence 48999999999999999999999 998887 6666555555566667654 345566789999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEE-EecCc--------------hhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccc
Q 014834 190 AQADNYEKIFSCMKPNSILG-LSHGF--------------LLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEI 254 (417)
Q Consensus 190 ~~~~Vl~eI~~~lk~gaiLi-~a~G~--------------~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~ 254 (417)
...++++++.+ + ++++|+ .+.|+ ....+.+ .+| +.+|++.+|+.|..... .|...
T Consensus 93 ~~~~v~~~l~~-~-~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~---~l~-~~~vv~~~~~~~~~v~~----~g~~~ 162 (220)
T 4huj_A 93 SIADIVTQVSD-W-GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSE---LVP-GAKVVKAFNTLPAAVLA----ADPDK 162 (220)
T ss_dssp GHHHHHTTCSC-C-TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHH---HST-TCEEEEESCSSCHHHHT----SCSBC
T ss_pred HHHHHHHHhhc-c-CCCEEEEcCCCCCcccccccccCCCcHHHHHHH---HCC-CCCEEECCCCCCHHHhh----hCccc
Confidence 99999988877 5 577766 55566 3445544 344 56899999999988732 11111
Q ss_pred cCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 255 NGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 255 ~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~ 287 (417)
.+.+...+++ .. +.++.+.+..|+..+|..
T Consensus 163 ~~~~~~v~~~-g~--~~~~~~~v~~l~~~~G~~ 192 (220)
T 4huj_A 163 GTGSRVLFLS-GN--HSDANRQVAELISSLGFA 192 (220)
T ss_dssp SSCEEEEEEE-ES--CHHHHHHHHHHHHHTTCE
T ss_pred CCCCeeEEEe-CC--CHHHHHHHHHHHHHhCCC
Confidence 1223333333 32 478999999999999964
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.5e-13 Score=131.91 Aligned_cols=217 Identities=13% Similarity=0.094 Sum_probs=140.7
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHH-----------HHcCceecC-------------
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEEN------------- 166 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A-----------~~~G~~~~~------------- 166 (417)
|+||+|||+|+||.++|..|.+. |++|++++++.++ .+.+ .+.|.....
T Consensus 15 ~~~I~VIG~G~mG~~iA~~la~~------G~~V~~~d~~~~~-~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~ 87 (302)
T 1f0y_A 15 VKHVTVIGGGLMGAGIAQVAAAT------GHTVVLVDQTEDI-LAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLST 87 (302)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHHH-HHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCeEEEEECCHHH-HHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhc
Confidence 58999999999999999999999 9999888776432 2222 123321000
Q ss_pred -CCcCCHHhhcCcCCEEEEccCCchH--HHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCch
Q 014834 167 -GTLGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGP 242 (417)
Q Consensus 167 -~~~~s~~Ea~~~ADIViLavpd~~~--~~Vl~eI~~~lk~gaiLi-~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~ 242 (417)
....+++|++++||+||+++|+... .+++++|.++++++++|+ .++|+.+..+.. .++..-+++.+||+.|..
T Consensus 88 i~~~~~~~~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i~~~~l~~---~~~~~~~~~g~h~~~P~~ 164 (302)
T 1f0y_A 88 IATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIAN---ATTRQDRFAGLHFFNPVP 164 (302)
T ss_dssp EEEESCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHT---TSSCGGGEEEEEECSSTT
T ss_pred eEEecCHHHhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHH---hcCCcccEEEEecCCCcc
Confidence 0145788889999999999998763 468889999999999775 567887766544 233334799999999876
Q ss_pred hHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHHHHHHHHH
Q 014834 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESLFR 322 (417)
Q Consensus 243 ~vr~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA~iea~~d 322 (417)
. +..+. +......+.+..+.+..++..+|... +.. . +.. -| +..-.+.+++.-++.
T Consensus 165 ~------------~~~~~--i~~g~~~~~e~~~~~~~l~~~~G~~~-v~~--~-~~~--g~----i~nr~l~~~~~Ea~~ 220 (302)
T 1f0y_A 165 V------------MKLVE--VIKTPMTSQKTFESLVDFSKALGKHP-VSC--K-DTP--GF----IVNRLLVPYLMEAIR 220 (302)
T ss_dssp T------------CCEEE--EECCTTCCHHHHHHHHHHHHHTTCEE-EEE--C-SCT--TT----THHHHHHHHHHHHHH
T ss_pred c------------CceEE--EeCCCCCCHHHHHHHHHHHHHcCCce-EEe--c-Ccc--cc----cHHHHHHHHHHHHHH
Confidence 5 23332 45566678899999999999999642 111 0 111 11 112233445666667
Q ss_pred HHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHhcHHHHHhc
Q 014834 323 RFTENGMSEDLAYKNTVECIT--GIISKIISTQGMLAVYNS 361 (417)
Q Consensus 323 ~~v~~Gl~~e~A~~~~~q~~~--~g~~~li~e~G~~~l~~~ 361 (417)
.+.+.|.++++.........- .|--.+.-..|++.+++.
T Consensus 221 l~~~g~~~~~~id~~~~~g~g~p~GP~~~~D~~Gld~~~~~ 261 (302)
T 1f0y_A 221 LYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFI 261 (302)
T ss_dssp HHHTTSSCHHHHHHHHHHHHCCSSCHHHHHHHHCHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 777778888775543322110 133445555566554443
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.3e-14 Score=138.78 Aligned_cols=95 Identities=15% Similarity=0.157 Sum_probs=83.3
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCC-hhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCC
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~-s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd 188 (417)
|+||+|||+|+||.++|++|.+. |+ +|++++++. ....+.+.+.|+.. ..+++|++++||+||+++|+
T Consensus 24 ~~~I~iIG~G~mG~~~A~~L~~~------G~~~V~~~dr~~~~~~~~~~~~~g~~~----~~~~~e~~~~aDvVi~~vp~ 93 (312)
T 3qsg_A 24 AMKLGFIGFGEAASAIASGLRQA------GAIDMAAYDAASAESWRPRAEELGVSC----KASVAEVAGECDVIFSLVTA 93 (312)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHH------SCCEEEEECSSCHHHHHHHHHHTTCEE----CSCHHHHHHHCSEEEECSCT
T ss_pred CCEEEEECccHHHHHHHHHHHHC------CCCeEEEEcCCCCHHHHHHHHHCCCEE----eCCHHHHHhcCCEEEEecCc
Confidence 48999999999999999999999 99 998888762 45566777889875 67899999999999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEEEecCch
Q 014834 189 AAQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 189 ~~~~~Vl~eI~~~lk~gaiLi~a~G~~ 215 (417)
....++++++.++++++++|++.+++.
T Consensus 94 ~~~~~~~~~l~~~l~~~~ivvd~st~~ 120 (312)
T 3qsg_A 94 QAALEVAQQAGPHLCEGALYADFTSCS 120 (312)
T ss_dssp TTHHHHHHHHGGGCCTTCEEEECCCCC
T ss_pred hhHHHHHHhhHhhcCCCCEEEEcCCCC
Confidence 999999999999999999999887764
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.56 E-value=1e-13 Score=133.11 Aligned_cols=153 Identities=14% Similarity=0.105 Sum_probs=105.7
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCC--------CcCCHHhhcC---cC
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG--------TLGDIYETIS---GS 179 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~--------~~~s~~Ea~~---~A 179 (417)
|+||+|||+|+||.++|.+|.+. |++|++++|+.+ ..+...+.|...... ...+..++.+ ++
T Consensus 3 ~m~i~iiG~G~~G~~~a~~l~~~------g~~V~~~~r~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (316)
T 2ew2_A 3 AMKIAIAGAGAMGSRLGIMLHQG------GNDVTLIDQWPA-HIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQV 75 (316)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHH-HHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCC
T ss_pred CCeEEEECcCHHHHHHHHHHHhC------CCcEEEEECCHH-HHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCC
Confidence 47999999999999999999999 999988877643 344444556543100 0113445444 89
Q ss_pred CEEEEccCCchHHHHHHHHHhcCCCCcEEE-EecCchh-hhhhhcccCCCCCccEEE---------eccCCCchhHHHHH
Q 014834 180 DLVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFLL-GHLQSIGLDFPKNIGVIA---------VCPKGMGPSVRRLY 248 (417)
Q Consensus 180 DIViLavpd~~~~~Vl~eI~~~lk~gaiLi-~a~G~~i-~~~~~~~i~~~~dv~VI~---------v~Pntpg~~vr~ly 248 (417)
|+||+++|+....++++++.++++++++|+ ...|+.. ..+.+ .+++. +++. .+|+.+...
T Consensus 76 d~vi~~v~~~~~~~v~~~l~~~l~~~~~iv~~~~g~~~~~~l~~---~~~~~-~vi~g~~~~~~~~~~p~~~~~~----- 146 (316)
T 2ew2_A 76 DLIIALTKAQQLDAMFKAIQPMITEKTYVLCLLNGLGHEDVLEK---YVPKE-NILVGITMWTAGLEGPGRVKLL----- 146 (316)
T ss_dssp SEEEECSCHHHHHHHHHHHGGGCCTTCEEEECCSSSCTHHHHTT---TSCGG-GEEEEEECCCCEEEETTEEEEC-----
T ss_pred CEEEEEeccccHHHHHHHHHHhcCCCCEEEEecCCCCcHHHHHH---HcCCc-cEEEEEeeeeeEEcCCCEEEEe-----
Confidence 999999999988999999999999999766 4568765 34433 33433 4553 345443332
Q ss_pred hhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 249 ~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~ 287 (417)
+.|...+ .+....+.+..+.+..++..+|..
T Consensus 147 -------~~g~~~i-~~~~~~~~~~~~~~~~ll~~~g~~ 177 (316)
T 2ew2_A 147 -------GDGEIEL-ENIDPSGKKFALEVVDVFQKAGLN 177 (316)
T ss_dssp -------SCCCEEE-EESSGGGHHHHHHHHHHHHHTTCC
T ss_pred -------cCCcEEE-eecCCCccHHHHHHHHHHHhCCCC
Confidence 4677774 433334567888999999999965
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.52 E-value=7.7e-13 Score=137.51 Aligned_cols=229 Identities=13% Similarity=0.131 Sum_probs=149.6
Q ss_pred ccccccccccchHhhhhhcccchhhhcccccccccch-----hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEE
Q 014834 69 PFLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLP-----DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV 143 (417)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~e~~vr~g~~~f~~~~-----~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~V 143 (417)
...+||--..-+.-.. ..|..++ +|..|... ..-.-|+||+|||+|.||.+||..|.++ |++|
T Consensus 13 ~~~~~~~~~~~~~~~~----~a~~~~~--~w~~p~~~~~~~~~~~~~i~kVaVIGaG~MG~~IA~~la~a------G~~V 80 (460)
T 3k6j_A 13 GENLYFQGSEVRSYLM----EAHSLAG--QWSLPNDRGDHTNSEAYDVNSVAIIGGGTMGKAMAICFGLA------GIET 80 (460)
T ss_dssp SGGGGGCBCHHHHHHH----HTTCCTT--SCBCSTTSCBTTSCCCCCCCEEEEECCSHHHHHHHHHHHHT------TCEE
T ss_pred ccchhhhhHHHHHHHH----hHHHhhc--cccCCCCccccccCCcccCCEEEEECCCHHHHHHHHHHHHC------CCeE
Confidence 3445655544442221 1444444 68777321 1223358999999999999999999999 9999
Q ss_pred EEEecCChhh-------HHHHHHcCceec-------C--CCcCCHHhhcCcCCEEEEccCCchH--HHHHHHHHhcCCCC
Q 014834 144 KVGLRKGSRS-------FAEARAAGFTEE-------N--GTLGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPN 205 (417)
Q Consensus 144 iVg~r~~s~s-------~~~A~~~G~~~~-------~--~~~~s~~Ea~~~ADIViLavpd~~~--~~Vl~eI~~~lk~g 205 (417)
++++++.++. .+.+.+.|.... + ....++ +++++||+||+++|.... .+++.+|.+.++++
T Consensus 81 ~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl-~al~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~ 159 (460)
T 3k6j_A 81 FLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDF-HKLSNCDLIVESVIEDMKLKKELFANLENICKST 159 (460)
T ss_dssp EEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCG-GGCTTCSEEEECCCSCHHHHHHHHHHHHTTSCTT
T ss_pred EEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCH-HHHccCCEEEEcCCCCHHHHHHHHHHHHhhCCCC
Confidence 9888764421 223444453200 0 013456 478999999999997653 46889999999999
Q ss_pred cEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHh
Q 014834 206 SILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVAL 284 (417)
Q Consensus 206 aiLi-~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~al 284 (417)
++|+ .++++++..+.+ .++...+++.+||..|...+ .. .-+.+....+.+..+.+..++..+
T Consensus 160 aIlasnTSsl~i~~ia~---~~~~p~r~iG~HffnPv~~m-------------~L-vEIv~g~~Ts~e~~~~~~~l~~~l 222 (460)
T 3k6j_A 160 CIFGTNTSSLDLNEISS---VLRDPSNLVGIHFFNPANVI-------------RL-VEIIYGSHTSSQAIATAFQACESI 222 (460)
T ss_dssp CEEEECCSSSCHHHHHT---TSSSGGGEEEEECCSSTTTC-------------CE-EEEECCSSCCHHHHHHHHHHHHHT
T ss_pred CEEEecCCChhHHHHHH---hccCCcceEEEEecchhhhC-------------CE-EEEEeCCCCCHHHHHHHHHHHHHh
Confidence 9885 677888876654 33344589999999987651 12 224556677889999999999999
Q ss_pred CCCceeccchhhhhhhhccccchhhhc-hHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 014834 285 GSPFTFATTLEQEYKSDIFGERGILLG-AVHGIVESLFRRFTENGMSEDLAYKNT 338 (417)
Q Consensus 285 G~~~~iettf~~e~~~dl~ge~t~L~G-~~pA~iea~~d~~v~~Gl~~e~A~~~~ 338 (417)
|...+. . . +. ..-+++ .+.+++..++..+.+.|.++++..+..
T Consensus 223 Gk~~v~-v--~-d~-------pGfi~Nril~~~~~EA~~l~~~~Ga~~e~ID~a~ 266 (460)
T 3k6j_A 223 KKLPVL-V--G-NC-------KSFVFNRLLHVYFDQSQKLMYEYGYLPHQIDKII 266 (460)
T ss_dssp TCEEEE-E--S-SC-------CHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHH
T ss_pred CCEEEE-E--e-cc-------cHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 975211 1 0 11 112333 333355555556668999998877654
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.8e-13 Score=129.33 Aligned_cols=153 Identities=13% Similarity=0.041 Sum_probs=110.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~~ 191 (417)
+||+|||+|+||.++|++|++. |++|+.+++. ++ +++|| |+++|+...
T Consensus 7 mkI~IIG~G~~G~sLA~~L~~~------G~~V~~~~~~-----------------------~~-~~~aD--ilavP~~ai 54 (232)
T 3dfu_A 7 LRVGIFDDGSSTVNMAEKLDSV------GHYVTVLHAP-----------------------ED-IRDFE--LVVIDAHGV 54 (232)
T ss_dssp CEEEEECCSCCCSCHHHHHHHT------TCEEEECSSG-----------------------GG-GGGCS--EEEECSSCH
T ss_pred cEEEEEeeCHHHHHHHHHHHHC------CCEEEEecCH-----------------------HH-hccCC--EEEEcHHHH
Confidence 7999999999999999999999 9988765541 12 46789 999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEecCc-hhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeecCCCC
Q 014834 192 ADNYEKIFSCMKPNSILGLSHGF-LLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (417)
Q Consensus 192 ~~Vl~eI~~~lk~gaiLi~a~G~-~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~dvs 270 (417)
.++++++.+++++|++|++++|. +...+.. ..+.+..++..||.. |.+..++.. +
T Consensus 55 ~~vl~~l~~~l~~g~ivvd~sgs~~~~vl~~---~~~~g~~fvg~HPm~------------------g~~~~i~a~---d 110 (232)
T 3dfu_A 55 EGYVEKLSAFARRGQMFLHTSLTHGITVMDP---LETSGGIVMSAHPIG------------------QDRWVASAL---D 110 (232)
T ss_dssp HHHHHHHHTTCCTTCEEEECCSSCCGGGGHH---HHHTTCEEEEEEEEE------------------TTEEEEEES---S
T ss_pred HHHHHHHHHhcCCCCEEEEECCcCHHHHHHH---HHhCCCcEEEeeeCC------------------CCceeeeCC---C
Confidence 99999999999999999987664 3332222 113457899999942 234434432 5
Q ss_pred HHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHHHHHHHHHHH
Q 014834 271 GRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESLFRRF 324 (417)
Q Consensus 271 gea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA~iea~~d~~ 324 (417)
.++.+.+..|+..+|+. ++..+ ...-|.|++.+..+..+.+++..+.+.+
T Consensus 111 ~~a~~~l~~L~~~lG~~-vv~~~---~~~hd~~~AAvsh~nhLv~L~~~A~~ll 160 (232)
T 3dfu_A 111 ELGETIVGLLVGELGGS-IVEIA---DDKRAQLAAALTYAGFLSTLQRDASYFL 160 (232)
T ss_dssp HHHHHHHHHHHHHTTCE-ECCCC---GGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCE-EEEeC---HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999974 33332 3345667666555556666666666655
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-13 Score=132.81 Aligned_cols=197 Identities=17% Similarity=0.143 Sum_probs=129.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCC-ch
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD-AA 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd-~~ 190 (417)
+||+|||+|+||.++|++|.+. |++|++++|+.++ .+...+.|+.. ..+++|+++++|+||+++|+ ..
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~------G~~V~~~dr~~~~-~~~~~~~g~~~----~~~~~~~~~~aDvvi~~vp~~~~ 70 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKA------GCSVTIWNRSPEK-AEELAALGAER----AATPCEVVESCPVTFAMLADPAA 70 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSGGG-GHHHHHTTCEE----CSSHHHHHHHCSEEEECCSSHHH
T ss_pred CEEEEEeecHHHHHHHHHHHHC------CCeEEEEcCCHHH-HHHHHHCCCee----cCCHHHHHhcCCEEEEEcCCHHH
Confidence 7999999999999999999999 9999888776544 45556678875 67899999999999999995 56
Q ss_pred HHHHH---HHHHhcCCCCcEEEEecCchhhhhhhcccCC-CCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeec
Q 014834 191 QADNY---EKIFSCMKPNSILGLSHGFLLGHLQSIGLDF-PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (417)
Q Consensus 191 ~~~Vl---~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~-~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~ 266 (417)
..+++ +++.+.+++|++|++.++............+ ..++.++. +|-..+... ... |-..+++ .
T Consensus 71 ~~~v~~~~~~l~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~~---a~~-------g~l~~~~-g 138 (287)
T 3pef_A 71 AEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLE-APVSGSKKP---AED-------GTLIILA-A 138 (287)
T ss_dssp HHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE-CCEECCHHH---HHH-------TCEEEEE-E
T ss_pred HHHHHcCcchHhhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCEEEE-CCCcCCHHH---Hhc-------CCEEEEE-e
Confidence 67888 7899999999999988876543211100011 23456665 674433331 122 2333233 3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhh-hchHHH----HHHHHHHHHHHcCCCHHHHHHHHHH
Q 014834 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGIL-LGAVHG----IVESLFRRFTENGMSEDLAYKNTVE 340 (417)
Q Consensus 267 ~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L-~G~~pA----~iea~~d~~v~~Gl~~e~A~~~~~q 340 (417)
. +.+..+.+..++..+|.. ++... .... +...-+ .+...+ ++.-++..+.+.|+++++.+.....
T Consensus 139 g--~~~~~~~~~~ll~~~g~~-~~~~g---~~g~---~~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~ 208 (287)
T 3pef_A 139 G--DRNLYDEAMPGFEKMGKK-IIHLG---DVGK---GAEMKLVVNMVMGGMMACFCEGLALGEKAGLATDAILDVIGA 208 (287)
T ss_dssp E--CHHHHHHHHHHHHHHEEE-EEECS---STTH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred C--CHHHHHHHHHHHHHhCCC-eEEeC---CCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3 467889999999999964 22111 0110 111111 222222 3333556678999999988876554
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.5e-13 Score=132.36 Aligned_cols=198 Identities=17% Similarity=0.101 Sum_probs=127.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCc-
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA- 189 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~- 189 (417)
|+||+|||+|+||.++|++|.+. |++|++++|+.++ .+...+.|+.. ..+++|++++||+||+++|+.
T Consensus 1 M~~I~iiG~G~mG~~~a~~l~~~------G~~V~~~dr~~~~-~~~~~~~g~~~----~~~~~~~~~~advvi~~v~~~~ 69 (287)
T 3pdu_A 1 MTTYGFLGLGIMGGPMAANLVRA------GFDVTVWNRNPAK-CAPLVALGARQ----ASSPAEVCAACDITIAMLADPA 69 (287)
T ss_dssp CCCEEEECCSTTHHHHHHHHHHH------TCCEEEECSSGGG-GHHHHHHTCEE----CSCHHHHHHHCSEEEECCSSHH
T ss_pred CCeEEEEccCHHHHHHHHHHHHC------CCeEEEEcCCHHH-HHHHHHCCCee----cCCHHHHHHcCCEEEEEcCCHH
Confidence 68999999999999999999999 9999888877554 44455568775 678999999999999999987
Q ss_pred hHHHHH---HHHHhcCCCCcEEEEecCchhhhhhhcccCC-CCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEee
Q 014834 190 AQADNY---EKIFSCMKPNSILGLSHGFLLGHLQSIGLDF-PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (417)
Q Consensus 190 ~~~~Vl---~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~-~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav 265 (417)
...+++ +++.+.+++|++|++++.............+ ..++.++.. |...+.. .... |...+++
T Consensus 70 ~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~~~~-pv~g~~~---~a~~-------g~l~~~~- 137 (287)
T 3pdu_A 70 AAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEA-PVSGTKK---PAED-------GTLIILA- 137 (287)
T ss_dssp HHHHHHHSTTCGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEC-CEECCHH---HHHH-------TCEEEEE-
T ss_pred HHHHHHcCchhhhhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEC-CccCCHH---HHhc-------CCEEEEE-
Confidence 556788 7788999999999988776432211100011 134556543 5322221 1122 3333232
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhh-hchHHH----HHHHHHHHHHHcCCCHHHHHHHHHH
Q 014834 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGIL-LGAVHG----IVESLFRRFTENGMSEDLAYKNTVE 340 (417)
Q Consensus 266 ~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L-~G~~pA----~iea~~d~~v~~Gl~~e~A~~~~~q 340 (417)
.. +.+..+.+..++..+|.. ++... ... -+...-+ .+...+ ++.-++..+.+.|+++++.+....+
T Consensus 138 gg--~~~~~~~~~~ll~~~g~~-~~~~g---~~g---~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~ 208 (287)
T 3pdu_A 138 AG--DQSLFTDAGPAFAALGKK-CLHLG---EVG---QGARMKLVVNMIMGQMMTALGEGMALGRNCGLDGGQLLEVLDA 208 (287)
T ss_dssp EE--CHHHHHHTHHHHHHHEEE-EEECS---STT---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred eC--CHHHHHHHHHHHHHhCCC-EEEcC---CCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 33 467889999999999963 21110 000 0111111 222222 2333455678999999998886665
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.2e-13 Score=133.31 Aligned_cols=198 Identities=16% Similarity=0.066 Sum_probs=127.7
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCc-
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA- 189 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~- 189 (417)
|+||+|||+|+||.++|++|.+. |++|++++|+.++ .+...+.|+.. ..+++|++++||+||+++|+.
T Consensus 21 m~~I~iIG~G~mG~~~A~~l~~~------G~~V~~~dr~~~~-~~~l~~~g~~~----~~~~~~~~~~aDvvi~~vp~~~ 89 (310)
T 3doj_A 21 MMEVGFLGLGIMGKAMSMNLLKN------GFKVTVWNRTLSK-CDELVEHGASV----CESPAEVIKKCKYTIAMLSDPC 89 (310)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSGGG-GHHHHHTTCEE----CSSHHHHHHHCSEEEECCSSHH
T ss_pred CCEEEEECccHHHHHHHHHHHHC------CCeEEEEeCCHHH-HHHHHHCCCeE----cCCHHHHHHhCCEEEEEcCCHH
Confidence 48999999999999999999999 9999888877544 44555778875 678999999999999999975
Q ss_pred hHHHHH---HHHHhcCCCCcEEEEecCchhhhhhhcc-cCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEee
Q 014834 190 AQADNY---EKIFSCMKPNSILGLSHGFLLGHLQSIG-LDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (417)
Q Consensus 190 ~~~~Vl---~eI~~~lk~gaiLi~a~G~~i~~~~~~~-i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav 265 (417)
...+++ +++.+.+++|++|+++++.......... .....++.++. +|-..+.. .-.. |...+++
T Consensus 90 ~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~v~-~pv~g~~~---~a~~-------g~l~i~~- 157 (310)
T 3doj_A 90 AALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVE-GPVSGSKK---PAED-------GQLIILA- 157 (310)
T ss_dssp HHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE-CCEECCHH---HHHH-------TCEEEEE-
T ss_pred HHHHHHhCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEe-CCCCCChh---HHhc-------CCeEEEE-
Confidence 456788 6788999999999988876432211100 01123456655 56332222 1122 3333333
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhh-hchHH----HHHHHHHHHHHHcCCCHHHHHHHHHH
Q 014834 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGIL-LGAVH----GIVESLFRRFTENGMSEDLAYKNTVE 340 (417)
Q Consensus 266 ~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L-~G~~p----A~iea~~d~~v~~Gl~~e~A~~~~~q 340 (417)
.. +.+..+.+..++..+|.. ++... ... -+...-+ .+... +++.-++..+.+.|+++++.+.....
T Consensus 158 gg--~~~~~~~~~~ll~~~g~~-~~~~g---~~g---~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~ 228 (310)
T 3doj_A 158 AG--DKALFEESIPAFDVLGKR-SFYLG---QVG---NGAKMKLIVNMIMGSMMNAFSEGLVLADKSGLSSDTLLDILDL 228 (310)
T ss_dssp EE--CHHHHHHHHHHHHHHEEE-EEECS---STT---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred cC--CHHHHHHHHHHHHHhCCC-EEEeC---CcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 33 368899999999999964 21111 001 0111111 12222 12333455678999999988775543
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.4e-13 Score=130.47 Aligned_cols=200 Identities=16% Similarity=0.134 Sum_probs=126.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCch-
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA- 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~- 190 (417)
+||+|||+|+||.++|++|.+. |++|++++|+.+ ..+...+.|... ...+++|++++||+||+++|+..
T Consensus 8 ~~I~iIG~G~mG~~~a~~l~~~------G~~V~~~dr~~~-~~~~~~~~g~~~---~~~~~~e~~~~aDvvi~~vp~~~~ 77 (303)
T 3g0o_A 8 FHVGIVGLGSMGMGAARSCLRA------GLSTWGADLNPQ-ACANLLAEGACG---AAASAREFAGVVDALVILVVNAAQ 77 (303)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHH-HHHHHHHTTCSE---EESSSTTTTTTCSEEEECCSSHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCeEEEEECCHH-HHHHHHHcCCcc---ccCCHHHHHhcCCEEEEECCCHHH
Confidence 6899999999999999999999 999988877643 445555667642 03578899999999999999864
Q ss_pred HHHHH---HHHHhcCCCCcEEEEecCchhhh---hhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEe
Q 014834 191 QADNY---EKIFSCMKPNSILGLSHGFLLGH---LQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (417)
Q Consensus 191 ~~~Vl---~eI~~~lk~gaiLi~a~G~~i~~---~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~lia 264 (417)
...++ +++.+.+++|++|++.+...... +.+ .....++.++. +|-..+... -. .|...+++
T Consensus 78 ~~~v~~~~~~l~~~l~~g~ivv~~st~~~~~~~~~~~--~~~~~g~~~~~-~pv~g~~~~---a~-------~g~l~~~~ 144 (303)
T 3g0o_A 78 VRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAA--ALTALNLNMLD-APVSGGAVK---AA-------QGEMTVMA 144 (303)
T ss_dssp HHHHHC--CCCGGGSCTTCEEEECSCCCHHHHHHHHH--HHHTTTCEEEE-CCEESCHHH---HH-------TTCEEEEE
T ss_pred HHHHHhChhhHHhhCCCCCEEEecCCCCHHHHHHHHH--HHHHcCCeEEe-CCCCCChhh---hh-------cCCeEEEe
Confidence 55676 67889999999999888764322 211 01123566766 774433331 12 34434333
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCCceeccc--hhhhhhhhccccchhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 014834 265 VHQDVDGRATNVALGWSVALGSPFTFATT--LEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVE 340 (417)
Q Consensus 265 v~~dvsgea~e~a~~L~~alG~~~~iett--f~~e~~~dl~ge~t~L~G~~pA~iea~~d~~v~~Gl~~e~A~~~~~q 340 (417)
.. +.+..+.+..++..+|.. ++... ...-.... +-... +.+...+++.-++..+.+.|+++++.+....+
T Consensus 145 -gg--~~~~~~~~~~ll~~~g~~-~~~~~~~~g~a~~~K-l~~N~-~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~ 216 (303)
T 3g0o_A 145 -SG--SEAAFTRLKPVLDAVASN-VYRISDTPGAGSTVK-IIHQL-LAGVHIAAAAEAMALAARAGIPLDVMYDVVTH 216 (303)
T ss_dssp -EC--CHHHHHHHHHHHHHHEEE-EEEEESSTTHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTT
T ss_pred -CC--CHHHHHHHHHHHHHHCCC-EEECCCCCcHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 33 468899999999999964 22111 00000000 10111 11111222333455778999999988876544
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.5e-13 Score=132.29 Aligned_cols=199 Identities=16% Similarity=0.099 Sum_probs=127.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccC-Cch
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS-DAA 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavp-d~~ 190 (417)
+||+|||+|+||.++|.+|.+. |++|.+++++.++ .+...+.|+.. ..+.+++++++|+||+++| +..
T Consensus 31 ~~I~iIG~G~mG~~~a~~l~~~------g~~V~~~~~~~~~-~~~~~~~g~~~----~~~~~~~~~~~DvVi~av~~~~~ 99 (316)
T 2uyy_A 31 KKIGFLGLGLMGSGIVSNLLKM------GHTVTVWNRTAEK-CDLFIQEGARL----GRTPAEVVSTCDITFACVSDPKA 99 (316)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT------TCCEEEECSSGGG-GHHHHHTTCEE----CSCHHHHHHHCSEEEECCSSHHH
T ss_pred CeEEEEcccHHHHHHHHHHHhC------CCEEEEEeCCHHH-HHHHHHcCCEE----cCCHHHHHhcCCEEEEeCCCHHH
Confidence 7899999999999999999998 9999888776544 34445578765 5678899999999999999 566
Q ss_pred HHHHHHH---HHhcCCCCcEEEEecCchh---hhhhhcccCC-CCCccEEEe-ccCCCchhHHHHHhhcccccCCCceEE
Q 014834 191 QADNYEK---IFSCMKPNSILGLSHGFLL---GHLQSIGLDF-PKNIGVIAV-CPKGMGPSVRRLYVQGKEINGAGINSS 262 (417)
Q Consensus 191 ~~~Vl~e---I~~~lk~gaiLi~a~G~~i---~~~~~~~i~~-~~dv~VI~v-~Pntpg~~vr~ly~~G~~~~G~Gv~~l 262 (417)
..+++.+ +.+.++++++|++++.... ..+.+ .+ ..++.++.. ++++|... . .|...+
T Consensus 100 ~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~---~~~~~~~~~v~~p~~g~~~~~-----~-------~g~~~~ 164 (316)
T 2uyy_A 100 AKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQ---VIVSRGGRFLEAPVSGNQQLS-----N-------DGMLVI 164 (316)
T ss_dssp HHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHH---HHHHTTCEEEECCEESCHHHH-----H-------HTCEEE
T ss_pred HHHHHcCchhHhhcCCCCCEEEECCCCCHHHHHHHHH---HHHHcCCEEEEcCccCChhHH-----h-------hCCEEE
Confidence 6778775 3478899998887766542 22222 11 124556542 22222221 1 344443
Q ss_pred EeecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHH-HHHHHHHHHHHcCCCHHHHHHHHHHH
Q 014834 263 FAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHG-IVESLFRRFTENGMSEDLAYKNTVEC 341 (417)
Q Consensus 263 iav~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA-~iea~~d~~v~~Gl~~e~A~~~~~q~ 341 (417)
+. .. +.+..+.+..++..+|....+.... +...........++++..+ +.|++. .+++.|+++++++..+.++
T Consensus 165 ~~-~g--~~~~~~~v~~ll~~~g~~~~~~~~~--~~~~~~K~~~n~~~~~~~~~~~Ea~~-la~~~G~~~~~~~~~~~~~ 238 (316)
T 2uyy_A 165 LA-AG--DRGLYEDCSSCFQAMGKTSFFLGEV--GNAAKMMLIVNMVQGSFMATIAEGLT-LAQVTGQSQQTLLDILNQG 238 (316)
T ss_dssp EE-EE--CHHHHHHTHHHHHHHEEEEEECSST--THHHHHHHHHHHHHHHHHHHHHHHHH-HHHHTTCCHHHHHHHHHHS
T ss_pred Ee-CC--CHHHHHHHHHHHHHhcCCEEEeCCC--CHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHHcC
Confidence 33 33 4678888999999999642111110 1011111122345555444 455544 4899999999988877665
Q ss_pred H
Q 014834 342 I 342 (417)
Q Consensus 342 ~ 342 (417)
.
T Consensus 239 ~ 239 (316)
T 2uyy_A 239 Q 239 (316)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.8e-13 Score=131.44 Aligned_cols=202 Identities=16% Similarity=0.060 Sum_probs=122.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCc-h
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA-A 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~-~ 190 (417)
+||+|||+|+||.+++.+|.+. |++|++++|+.++ .+...+.|+.. ..+++++++++|+||+++|+. .
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~------g~~V~~~~~~~~~-~~~~~~~g~~~----~~~~~~~~~~~Dvvi~~vp~~~~ 69 (296)
T 2gf2_A 1 MPVGFIGLGNMGNPMAKNLMKH------GYPLIIYDVFPDA-CKEFQDAGEQV----VSSPADVAEKADRIITMLPTSIN 69 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHHHT------TCCEEEECSSTHH-HHHHHTTTCEE----CSSHHHHHHHCSEEEECCSSHHH
T ss_pred CeEEEEeccHHHHHHHHHHHHC------CCEEEEEeCCHHH-HHHHHHcCCee----cCCHHHHHhcCCEEEEeCCCHHH
Confidence 4799999999999999999998 9999888776443 44555668765 568889999999999999765 4
Q ss_pred HHHHHHH---HHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeecC
Q 014834 191 QADNYEK---IFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (417)
Q Consensus 191 ~~~Vl~e---I~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~ 267 (417)
..+++.+ +.+.+++|++|+..+|+...........+++. .+.+|++|...-...... |...++ +..
T Consensus 70 ~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~---g~~~~~~p~~~g~~~a~~-------~~~~~~-~~~ 138 (296)
T 2gf2_A 70 AIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKM---GAVFMDAPVSGGVGAARS-------GNLTFM-VGG 138 (296)
T ss_dssp HHHHHHSTTSGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHT---TCEEEECCEESHHHHHHH-------TCEEEE-EES
T ss_pred HHHHHhCchhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHHc---CCEEEEcCCCCChhHHhc-------CcEEEE-eCC
Confidence 5677775 45678999988888888654332100011111 122345554332222222 343432 333
Q ss_pred CCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 014834 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTV 339 (417)
Q Consensus 268 dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA~iea~~d~~v~~Gl~~e~A~~~~~ 339 (417)
+.+..+.+..++..+|.. ++.+.....-..--+............+.|++. .+.+.|+++++++....
T Consensus 139 --~~~~~~~v~~l~~~~g~~-~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~-~~~~~G~~~~~~~~~~~ 206 (296)
T 2gf2_A 139 --VEDEFAAAQELLGCMGSN-VVYCGAVGTGQAAKICNNMLLAISMIGTAEAMN-LGIRLGLDPKLLAKILN 206 (296)
T ss_dssp --CGGGHHHHHHHHTTTEEE-EEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHTTCCHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHcCC-eEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHH
Confidence 467889999999999963 111110000000000000001111122445544 78999999988777544
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.48 E-value=6.8e-13 Score=138.55 Aligned_cols=213 Identities=11% Similarity=0.128 Sum_probs=141.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH-----------cCceecC---------CCcC
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEEN---------GTLG 170 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~-----------~G~~~~~---------~~~~ 170 (417)
++||+|||+|+||.+||.+|.++ |++|++++++.+ ..+.+.+ .|..... ....
T Consensus 5 ~~kVgVIGaG~MG~~IA~~la~a------G~~V~l~D~~~e-~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~ 77 (483)
T 3mog_A 5 VQTVAVIGSGTMGAGIAEVAASH------GHQVLLYDISAE-ALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVT 77 (483)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHT------TCCEEEECSCHH-HHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEEC
T ss_pred CCEEEEECcCHHHHHHHHHHHHC------CCeEEEEECCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeC
Confidence 37999999999999999999999 999988877643 3333322 3321000 0134
Q ss_pred CHHhhcCcCCEEEEccCCchH--HHHHHHHHhcCCCCcEE-EEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHH
Q 014834 171 DIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRL 247 (417)
Q Consensus 171 s~~Ea~~~ADIViLavpd~~~--~~Vl~eI~~~lk~gaiL-i~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~l 247 (417)
++ +++++||+||+++|+... .+++.++.+.++++++| +.++++++..+.. .++...+++.+||..|.+..
T Consensus 78 ~~-~~~~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i~~ia~---~~~~p~~~ig~hf~~Pa~v~--- 150 (483)
T 3mog_A 78 DI-HALAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISITAIAA---EIKNPERVAGLHFFNPAPVM--- 150 (483)
T ss_dssp CG-GGGGGCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTT---TSSSGGGEEEEEECSSTTTC---
T ss_pred CH-HHhcCCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCHHHHHH---HccCccceEEeeecChhhhC---
Confidence 55 468999999999998854 47899999999999988 5788998876654 33344589999999998872
Q ss_pred HhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhc-hHHHHHHHHHHHHHH
Q 014834 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLG-AVHGIVESLFRRFTE 326 (417)
Q Consensus 248 y~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G-~~pA~iea~~d~~v~ 326 (417)
...- ++.....+.+..+.+..++..+|...+ .. .+.. +-+++ .+.+++..++..+.+
T Consensus 151 ----------~Lve-vv~g~~Ts~e~~~~~~~l~~~lGk~~v-~v---~d~~-------Gfi~Nr~l~~~~~Ea~~l~~~ 208 (483)
T 3mog_A 151 ----------KLVE-VVSGLATAAEVVEQLCELTLSWGKQPV-RC---HSTP-------GFIVNRVARPYYSEAWRALEE 208 (483)
T ss_dssp ----------CEEE-EEECSSCCHHHHHHHHHHHHHTTCEEE-EE---ESCT-------TTTHHHHTHHHHHHHHHHHHT
T ss_pred ----------CeEE-EecCCCCCHHHHHHHHHHHHHhCCEEE-EE---eccC-------cchHHHHHHHHHHHHHHHHHh
Confidence 1333 555777888999999999999997421 11 0111 12322 333355566667777
Q ss_pred cCCCHHHHHHHHHHHH--HHHHHHHHHHhcHHHHH
Q 014834 327 NGMSEDLAYKNTVECI--TGIISKIISTQGMLAVY 359 (417)
Q Consensus 327 ~Gl~~e~A~~~~~q~~--~~g~~~li~e~G~~~l~ 359 (417)
.|.++++..+..-... .-|--.++-..|++..+
T Consensus 209 g~~~~~~id~a~~~~~G~p~GP~~l~D~~Gld~~~ 243 (483)
T 3mog_A 209 QVAAPEVIDAALRDGAGFPMGPLELTDLIGQDVNF 243 (483)
T ss_dssp TCSCHHHHHHHHHHTTCCSSCHHHHHHHHCHHHHH
T ss_pred CCCCHHHHHHHHHhcCCCCCCHHHHHHHhchHHHH
Confidence 7788877665332210 01334455555664433
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.6e-13 Score=134.51 Aligned_cols=198 Identities=14% Similarity=0.131 Sum_probs=118.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~~ 191 (417)
+||||||+|+||.+||+||.++ |++|++++|+.++ .+...+.|... +.++.|+++++|+||+++|+..+
T Consensus 6 ~kIgfIGLG~MG~~mA~~L~~~------G~~V~v~dr~~~~-~~~l~~~G~~~----~~s~~e~~~~~dvvi~~l~~~~~ 74 (297)
T 4gbj_A 6 EKIAFLGLGNLGTPIAEILLEA------GYELVVWNRTASK-AEPLTKLGATV----VENAIDAITPGGIVFSVLADDAA 74 (297)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT------TCEEEEC--------CTTTTTTCEE----CSSGGGGCCTTCEEEECCSSHHH
T ss_pred CcEEEEecHHHHHHHHHHHHHC------CCeEEEEeCCHHH-HHHHHHcCCeE----eCCHHHHHhcCCceeeeccchhh
Confidence 5899999999999999999999 9999988887544 34445678876 68999999999999999998776
Q ss_pred H-HHH-HHHHhcCCCCcEEEEecCchhhhhhhc-ccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeecCC
Q 014834 192 A-DNY-EKIFSCMKPNSILGLSHGFLLGHLQSI-GLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD 268 (417)
Q Consensus 192 ~-~Vl-~eI~~~lk~gaiLi~a~G~~i~~~~~~-~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~d 268 (417)
. +++ .++.+.+++|+++++.+-.......+. ...-..++.++- +|-.-+.. .-+. |-.. +.+..
T Consensus 75 ~~~v~~~~~~~~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~ld-apVsGg~~---~a~~-------g~l~-im~gG- 141 (297)
T 4gbj_A 75 VEELFSMELVEKLGKDGVHVSMSTISPETSRQLAQVHEWYGAHYVG-APIFARPE---AVRA-------KVGN-ICLSG- 141 (297)
T ss_dssp HHHHSCHHHHHHHCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE-CCEECCHH---HHHH-------TCCE-EEEEE-
T ss_pred HHHHHHHHHHhhcCCCeEEEECCCCChHHHHHHHHHHHhcCCceec-CCcCCCcc---cccc-------ccce-eeccc-
Confidence 4 454 468889999999998876643211110 011123555553 33221111 1112 2222 22233
Q ss_pred CCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhc-hH-HHHHHH---HHHHHHHcCCCHHHHHHHHHH
Q 014834 269 VDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLG-AV-HGIVES---LFRRFTENGMSEDLAYKNTVE 340 (417)
Q Consensus 269 vsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G-~~-pA~iea---~~d~~v~~Gl~~e~A~~~~~q 340 (417)
+.++.+.++.++..+|.. ++..- ...- -+...=+++ .+ -..+.+ ++..+.+.|++++..+....+
T Consensus 142 -~~~~~~~~~~~l~~~g~~-i~~~g--~~~G---~g~~~Kl~~N~~~~~~~~~~aEa~~la~~~Gld~~~~~~~l~~ 211 (297)
T 4gbj_A 142 -NAGAKERIKPIVENFVKG-VFDFG--DDPG---AANVIKLAGNFMIACSLEMMGEAFTMAEKNGISRQSIYEMLTS 211 (297)
T ss_dssp -CHHHHHHHHHHHHTTCSE-EEECC--SCTT---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHT
T ss_pred -chhHHHHHHHHHHHhhCC-eEEec--CCcc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 458899999999999964 11100 0000 011111111 11 112333 344578999999988775443
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-12 Score=127.30 Aligned_cols=199 Identities=15% Similarity=0.052 Sum_probs=125.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCch-
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA- 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~- 190 (417)
+||+|||+|+||.++|++|++. |++|++++|+.+ ..+.+.+.|... ..+++|++++||+||+++|+..
T Consensus 10 ~~IgiIG~G~mG~~~A~~l~~~------G~~V~~~dr~~~-~~~~~~~~g~~~----~~~~~e~~~~aDvVi~~vp~~~~ 78 (306)
T 3l6d_A 10 FDVSVIGLGAMGTIMAQVLLKQ------GKRVAIWNRSPG-KAAALVAAGAHL----CESVKAALSASPATIFVLLDNHA 78 (306)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSHH-HHHHHHHHTCEE----CSSHHHHHHHSSEEEECCSSHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCHH-HHHHHHHCCCee----cCCHHHHHhcCCEEEEEeCCHHH
Confidence 8999999999999999999999 999988877644 345555568775 6789999999999999999876
Q ss_pred HHHHHH--HHHhcCCCCcEEEEecCchhhhhhhc-ccCCCCCccEEEeccCCCchhHHHHHhhcccccCC-CceEEEeec
Q 014834 191 QADNYE--KIFSCMKPNSILGLSHGFLLGHLQSI-GLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGA-GINSSFAVH 266 (417)
Q Consensus 191 ~~~Vl~--eI~~~lk~gaiLi~a~G~~i~~~~~~-~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~-Gv~~liav~ 266 (417)
..+++. .+.+ +++|++|++++.......... ....+.++.++.. |-..++.. . |. +... + +.
T Consensus 79 ~~~v~~~~~l~~-~~~g~ivid~st~~~~~~~~l~~~~~~~g~~~vda-pv~g~~~~-----~-----~~~~~~i-~-~g 144 (306)
T 3l6d_A 79 THEVLGMPGVAR-ALAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKG-MIVAYPRN-----V-----GHRESHS-I-HT 144 (306)
T ss_dssp HHHHHTSTTHHH-HTTTCEEEECCCCCTTHHHHHHHHHHHTTCEEEEE-EEESCGGG-----T-----TCTTCEE-E-EE
T ss_pred HHHHhcccchhh-ccCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEec-ccccCccc-----c-----cCCceEE-E-Ec
Confidence 567776 5644 579999998887643211110 0011235666653 53322210 1 12 2333 2 23
Q ss_pred CCCCHHHHHHHHHHHHHhCCCceeccchhhhhhh-hccccchhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 014834 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYKS-DIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVEC 341 (417)
Q Consensus 267 ~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~-dl~ge~t~L~G~~pA~iea~~d~~v~~Gl~~e~A~~~~~q~ 341 (417)
. +.++.+.++.++..+|+. ++....-+.... .++. .++.+...++.| ++..+.+.|++++..+....+.
T Consensus 145 g--~~~~~~~~~~ll~~lg~~-~~~~~~g~~~g~g~~~k--~~~~~~~~~~~E-a~~la~~~Gld~~~~~~~~~~~ 214 (306)
T 3l6d_A 145 G--DREAFEQHRALLEGLAGH-TVFLPWDEALAFATVLH--AHAFAAMVTFFE-AVGAGDRFGLPVSKTARLLLET 214 (306)
T ss_dssp E--CHHHHHHHHHHHHTTCSE-EEECCHHHHHHHHHHHH--HHHHHHHHHHHH-HHHHHHHTTCCHHHHHHHHHHH
T ss_pred C--CHHHHHHHHHHHHHhcCC-EEEecCCCCccHHHHHH--HHHHHHHHHHHH-HHHHHHHcCCCHHHHHHHHHHh
Confidence 3 468899999999999763 322200000010 0111 222222333334 4456789999999998876664
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.3e-13 Score=126.25 Aligned_cols=176 Identities=13% Similarity=0.083 Sum_probs=122.5
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcC-------ceecCCCcCCHHhhcCcCCEEE
Q 014834 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-------FTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G-------~~~~~~~~~s~~Ea~~~ADIVi 183 (417)
+||+||| +|.||.+++..|.+. |++|.+.+|+.++..+.....| +. ..+.+++++++|+||
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~D~Vi 69 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATL------GHEIVVGSRREEKAEAKAAEYRRIAGDASIT-----GMKNEDAAEACDIAV 69 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTT------TCEEEEEESSHHHHHHHHHHHHHHHSSCCEE-----EEEHHHHHHHCSEEE
T ss_pred CeEEEEcCCCHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHhccccccCCCC-----hhhHHHHHhcCCEEE
Confidence 4899999 999999999999998 9999888876444333333223 22 246778899999999
Q ss_pred EccCCchHHHHHHHHHhcCCCCcEEE-EecCch--------------hhhhhhcccCCCCCccEEEeccCCCchhHHHHH
Q 014834 184 LLISDAAQADNYEKIFSCMKPNSILG-LSHGFL--------------LGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (417)
Q Consensus 184 Lavpd~~~~~Vl~eI~~~lk~gaiLi-~a~G~~--------------i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly 248 (417)
+++|+....++++++.+.++ +++|+ .+.|+. ...+.+ .+| +..++..||+.|+.......
T Consensus 70 ~~~~~~~~~~~~~~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~---~~~-~~~~v~~~~~~~~~~~~~~~ 144 (212)
T 1jay_A 70 LTIPWEHAIDTARDLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAE---VLE-SEKVVSALHTIPAARFANLD 144 (212)
T ss_dssp ECSCHHHHHHHHHHTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHH---HHT-CSCEEECCTTCCHHHHHCTT
T ss_pred EeCChhhHHHHHHHHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHH---hCC-CCeEEEEccchHHHHhhCcC
Confidence 99999888889988888774 77766 556676 344443 333 36899999999988732111
Q ss_pred hhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHh-CCCceeccchhhhhhhhccccchhhhchHHHHHHHHH
Q 014834 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVAL-GSPFTFATTLEQEYKSDIFGERGILLGAVHGIVESLF 321 (417)
Q Consensus 249 ~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~al-G~~~~iettf~~e~~~dl~ge~t~L~G~~pA~iea~~ 321 (417)
. ...+.. ++... +.++.+.+..++..+ |.. .+. .. -.+....+-++.|+++...+
T Consensus 145 --~----~~~~~~-~~~g~--~~~~~~~v~~l~~~~~G~~-~~~------~~--~~~~a~~~k~~~~~~~~~~~ 200 (212)
T 1jay_A 145 --E----KFDWDV-PVCGD--DDESKKVVMSLISEIDGLR-PLD------AG--PLSNSRLVESLTPLILNIMR 200 (212)
T ss_dssp --C----CCCEEE-EEEES--CHHHHHHHHHHHHHSTTEE-EEE------EE--SGGGHHHHHTHHHHHHHHHH
T ss_pred --C----CCCccE-EEECC--cHHHHHHHHHHHHHcCCCC-cee------cc--chhHHHHhcchHHHHHHHHH
Confidence 1 112443 44333 578899999999999 863 111 11 14566677888888777665
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.45 E-value=7.5e-12 Score=123.02 Aligned_cols=201 Identities=13% Similarity=0.073 Sum_probs=133.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHc-------CceecCCCcCCHHhhcCcCCEEEE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-------GFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~-------G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
|||||||+|.||.+||++|. . |++|++++++.+ ..+.+.+. ++.. ..++++ +++||+||.
T Consensus 13 ~~V~vIG~G~MG~~iA~~la-a------G~~V~v~d~~~~-~~~~~~~~l~~~~~~~i~~----~~~~~~-~~~aDlVie 79 (293)
T 1zej_A 13 MKVFVIGAGLMGRGIAIAIA-S------KHEVVLQDVSEK-ALEAAREQIPEELLSKIEF----TTTLEK-VKDCDIVME 79 (293)
T ss_dssp CEEEEECCSHHHHHHHHHHH-T------TSEEEEECSCHH-HHHHHHHHSCGGGGGGEEE----ESSCTT-GGGCSEEEE
T ss_pred CeEEEEeeCHHHHHHHHHHH-c------CCEEEEEECCHH-HHHHHHHHHHHHHhCCeEE----eCCHHH-HcCCCEEEE
Confidence 89999999999999999999 9 999998887643 45555555 5553 456666 889999999
Q ss_pred ccCCchH--HHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceE
Q 014834 185 LISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINS 261 (417)
Q Consensus 185 avpd~~~--~~Vl~eI~~~lk~gaiLi-~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~ 261 (417)
++|+... ..++.++.+. |+++|+ .++++++..+.+ ......+++.+||-.|... +-..
T Consensus 80 avpe~~~vk~~l~~~l~~~--~~~IlasntSti~~~~~a~---~~~~~~r~~G~Hf~~Pv~~--------------~~lv 140 (293)
T 1zej_A 80 AVFEDLNTKVEVLREVERL--TNAPLCSNTSVISVDDIAE---RLDSPSRFLGVHWMNPPHV--------------MPLV 140 (293)
T ss_dssp CCCSCHHHHHHHHHHHHTT--CCSCEEECCSSSCHHHHHT---TSSCGGGEEEEEECSSTTT--------------CCEE
T ss_pred cCcCCHHHHHHHHHHHhcC--CCCEEEEECCCcCHHHHHH---HhhcccceEeEEecCcccc--------------CCEE
Confidence 9998875 3577777665 898875 677887765543 2223347999999777543 2233
Q ss_pred EEeecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhc-h-HHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 014834 262 SFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLG-A-VHGIVESLFRRFTENGMSEDLAYKNTV 339 (417)
Q Consensus 262 liav~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G-~-~pA~iea~~d~~v~~Gl~~e~A~~~~~ 339 (417)
-+.+....+.+..+.+..++..+|... +.. .+. | +++ . .+.+.|++ ..+.+ |+++++......
T Consensus 141 eiv~g~~t~~~~~~~~~~l~~~lGk~~-v~v---~d~----f-----i~Nrll~~~~~EA~-~l~~~-Gv~~e~id~~~~ 205 (293)
T 1zej_A 141 EIVISRFTDSKTVAFVEGFLRELGKEV-VVC---KGQ----S-----LVNRFNAAVLSEAS-RMIEE-GVRAEDVDRVWK 205 (293)
T ss_dssp EEEECTTCCHHHHHHHHHHHHHTTCEE-EEE---ESS----C-----HHHHHHHHHHHHHH-HHHHH-TCCHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHcCCeE-EEe---ccc----c-----cHHHHHHHHHHHHH-HHHHh-CCCHHHHHHHHH
Confidence 355666678899999999999999642 111 011 1 222 1 22344443 34444 998887666443
Q ss_pred HHHH--H---HHHHHHHHhcHHHHH
Q 014834 340 ECIT--G---IISKIISTQGMLAVY 359 (417)
Q Consensus 340 q~~~--~---g~~~li~e~G~~~l~ 359 (417)
...- . |--.++-..|++..+
T Consensus 206 ~g~g~~~~~~GP~~l~D~~Gld~~~ 230 (293)
T 1zej_A 206 HHLGLLYTLFGPLGNLDYIGLDVAY 230 (293)
T ss_dssp TTHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred hcCCCCCCCCCHHHHHHHhchHHHH
Confidence 2111 1 445566666765443
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.2e-12 Score=127.17 Aligned_cols=188 Identities=15% Similarity=0.122 Sum_probs=122.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCc-h
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA-A 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~-~ 190 (417)
+||+|||+|+||.++|++|.+. |++|++++|+.++ .+...+.|+.. ..+++|+++ +|+||+++|+. .
T Consensus 16 ~~I~vIG~G~mG~~~A~~l~~~------G~~V~~~dr~~~~-~~~~~~~g~~~----~~~~~~~~~-aDvvi~~vp~~~~ 83 (296)
T 3qha_A 16 LKLGYIGLGNMGAPMATRMTEW------PGGVTVYDIRIEA-MTPLAEAGATL----ADSVADVAA-ADLIHITVLDDAQ 83 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHTTS------TTCEEEECSSTTT-SHHHHHTTCEE----CSSHHHHTT-SSEEEECCSSHHH
T ss_pred CeEEEECcCHHHHHHHHHHHHC------CCeEEEEeCCHHH-HHHHHHCCCEE----cCCHHHHHh-CCEEEEECCChHH
Confidence 6899999999999999999999 9999888877554 45556678875 678999999 99999999975 4
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCchhhh---hhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeecC
Q 014834 191 QADNYEKIFSCMKPNSILGLSHGFLLGH---LQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (417)
Q Consensus 191 ~~~Vl~eI~~~lk~gaiLi~a~G~~i~~---~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~ 267 (417)
..++++++.+.+++|++|++.+...... +.+ .....++.++- +|-..+.. .-.. |...++ +..
T Consensus 84 ~~~v~~~l~~~l~~g~ivv~~st~~~~~~~~~~~--~~~~~g~~~~~-~pv~g~~~---~a~~-------g~l~~~-~gg 149 (296)
T 3qha_A 84 VREVVGELAGHAKPGTVIAIHSTISDTTAVELAR--DLKARDIHIVD-APVSGGAA---AAAR-------GELATM-VGA 149 (296)
T ss_dssp HHHHHHHHHTTCCTTCEEEECSCCCHHHHHHHHH--HHGGGTCEEEE-CCEESCHH---HHHH-------TCEEEE-EEC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHH--HHHHcCCEEEe-CCCcCCHH---HHhc-------CCccEE-ecC
Confidence 5678999999999999999888764322 211 01123455554 45332222 1122 333323 333
Q ss_pred CCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhh-hchHHH----HHHHHHHHHHHcCCCHHHH
Q 014834 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGIL-LGAVHG----IVESLFRRFTENGMSEDLA 334 (417)
Q Consensus 268 dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L-~G~~pA----~iea~~d~~v~~Gl~~e~A 334 (417)
+.+..+.+..++..+|.. ++... ... -++..-+ .+...+ ++.-++..+.+.|+++++.
T Consensus 150 --~~~~~~~~~~ll~~~g~~-~~~~g---~~g---~a~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~ 212 (296)
T 3qha_A 150 --DREVYERIKPAFKHWAAV-VIHAG---EPG---AGTRMKLARNMLTFTSYAAACEAMKLAEAAGLDLQAL 212 (296)
T ss_dssp --CHHHHHHHHHHHHHHEEE-EEEEE---STT---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred --CHHHHHHHHHHHHHHcCC-eEEcC---Chh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 468899999999999963 21110 000 0000101 112222 2333455678999999887
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=4.6e-13 Score=127.80 Aligned_cols=193 Identities=12% Similarity=0.053 Sum_probs=122.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~ 190 (417)
|+||+|||+|+||.+++.+|.+ |++|.+++|+.++ .+...+.|+.. .. ++++++++|+||+++|+..
T Consensus 1 M~~i~iiG~G~~G~~~a~~l~~-------g~~V~~~~~~~~~-~~~~~~~g~~~----~~-~~~~~~~~D~vi~~v~~~~ 67 (289)
T 2cvz_A 1 MEKVAFIGLGAMGYPMAGHLAR-------RFPTLVWNRTFEK-ALRHQEEFGSE----AV-PLERVAEARVIFTCLPTTR 67 (289)
T ss_dssp -CCEEEECCSTTHHHHHHHHHT-------TSCEEEECSSTHH-HHHHHHHHCCE----EC-CGGGGGGCSEEEECCSSHH
T ss_pred CCeEEEEcccHHHHHHHHHHhC-------CCeEEEEeCCHHH-HHHHHHCCCcc----cC-HHHHHhCCCEEEEeCCChH
Confidence 5789999999999999999863 5678877776544 33344446654 33 6788899999999999876
Q ss_pred -HHHHHHHHHhcCCCCcEEEEecCchh---hhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeec
Q 014834 191 -QADNYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (417)
Q Consensus 191 -~~~Vl~eI~~~lk~gaiLi~a~G~~i---~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~ 266 (417)
..++++++.+.+++|++|++.+.... ..+.+ .....++.++.. |..++.. .... |...+++ .
T Consensus 68 ~~~~v~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~--~~~~~g~~~~~~-p~~~~~~---~~~~-------g~~~~~~-~ 133 (289)
T 2cvz_A 68 EVYEVAEALYPYLREGTYWVDATSGEPEASRRLAE--RLREKGVTYLDA-PVSGGTS---GAEA-------GTLTVML-G 133 (289)
T ss_dssp HHHHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHH--HHHTTTEEEEEC-CEESHHH---HHHH-------TCEEEEE-E
T ss_pred HHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCEEEEe-cCCCChh---HHhh-------CCeEEEE-C
Confidence 56788889999999998886654432 22222 111235667765 7655443 2223 3444333 3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHH----HHHHHHHH---HHHcCCCHHHHHHHHH
Q 014834 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHG----IVESLFRR---FTENGMSEDLAYKNTV 339 (417)
Q Consensus 267 ~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA----~iea~~d~---~v~~Gl~~e~A~~~~~ 339 (417)
. +.+..+.+..++ .+|.. ++... +. +....+..+.++ ++.++.|. +.+.|+++++++..+.
T Consensus 134 ~--~~~~~~~~~~ll-~~g~~-~~~~~---~~-----~~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~ 201 (289)
T 2cvz_A 134 G--PEEAVERVRPFL-AYAKK-VVHVG---PV-----GAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVIN 201 (289)
T ss_dssp S--CHHHHHHHGGGC-TTEEE-EEEEE---ST-----THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHT
T ss_pred C--CHHHHHHHHHHH-hhcCC-eEEcC---CC-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHH
Confidence 2 567888899999 99853 22111 11 111222222222 34555555 8899999998888766
Q ss_pred HHH
Q 014834 340 ECI 342 (417)
Q Consensus 340 q~~ 342 (417)
++.
T Consensus 202 ~~~ 204 (289)
T 2cvz_A 202 ASS 204 (289)
T ss_dssp TST
T ss_pred ccC
Confidence 554
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.42 E-value=7.6e-13 Score=130.34 Aligned_cols=143 Identities=13% Similarity=0.056 Sum_probs=97.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcC-----------ceecCCCcCCHHhhcCcCC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-----------FTEENGTLGDIYETISGSD 180 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G-----------~~~~~~~~~s~~Ea~~~AD 180 (417)
+||+|||+|+||.++|.+|.++ |++|.+++|+.++. +...+.| +.. ..++++ ++++|
T Consensus 15 ~kI~iIG~G~mG~ala~~L~~~------G~~V~~~~r~~~~~-~~l~~~g~~~~~~~~~~~~~~----~~~~~~-~~~aD 82 (335)
T 1z82_A 15 MRFFVLGAGSWGTVFAQMLHEN------GEEVILWARRKEIV-DLINVSHTSPYVEESKITVRA----TNDLEE-IKKED 82 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSHHHH-HHHHHHSCBTTBTTCCCCSEE----ESCGGG-CCTTE
T ss_pred CcEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHHHH-HHHHHhCCcccCCCCeeeEEE----eCCHHH-hcCCC
Confidence 7999999999999999999999 99999888864443 3333444 232 457778 89999
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEe-cCchhhhhh---hc-ccCCCCCccEEEeccCCCchhHHHHHhhccccc
Q 014834 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS-HGFLLGHLQ---SI-GLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEIN 255 (417)
Q Consensus 181 IViLavpd~~~~~Vl~eI~~~lk~gaiLi~a-~G~~i~~~~---~~-~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~ 255 (417)
+||++||++...++++++.+ ++++|+.+ .|+.....+ +. ...++ ....++.+|+.+...
T Consensus 83 vVil~vk~~~~~~v~~~l~~---~~~~vv~~~nGi~~~~~~~l~~~~~~~~~-~~~~~~~~P~~~~~~------------ 146 (335)
T 1z82_A 83 ILVIAIPVQYIREHLLRLPV---KPSMVLNLSKGIEIKTGKRVSEIVEEILG-CPYAVLSGPSHAEEV------------ 146 (335)
T ss_dssp EEEECSCGGGHHHHHTTCSS---CCSEEEECCCCCCTTTCCCHHHHHHHHTC-CCEEEEESSCCHHHH------------
T ss_pred EEEEECCHHHHHHHHHHhCc---CCCEEEEEeCCCCCCccCcHHHHHHHHcC-CceEEEECCccHHHH------------
Confidence 99999999888889887766 77776644 487542111 00 00123 224678999987665
Q ss_pred CCCceEEEeecCCCCHHHHHHHHHHHHHhCC
Q 014834 256 GAGINSSFAVHQDVDGRATNVALGWSVALGS 286 (417)
Q Consensus 256 G~Gv~~liav~~dvsgea~e~a~~L~~alG~ 286 (417)
+.|.+..+....+ + .+.+..++...|.
T Consensus 147 ~~g~~~~~~~g~~-~---~~~~~~ll~~~g~ 173 (335)
T 1z82_A 147 AKKLPTAVTLAGE-N---SKELQKRISTEYF 173 (335)
T ss_dssp HTTCCEEEEEEET-T---HHHHHHHHCCSSE
T ss_pred hCCCceEEEEEeh-h---HHHHHHHhCCCCE
Confidence 2455332333322 1 5677788887774
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.8e-12 Score=135.10 Aligned_cols=192 Identities=14% Similarity=0.096 Sum_probs=125.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHc---CceecCCCcCCHHhhcCc---CCEEEEc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYETISG---SDLVLLL 185 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~---G~~~~~~~~~s~~Ea~~~---ADIViLa 185 (417)
++|||||+|+||.++|++|.+. |++|.+++|+.++..+...+. |+.. ..+++|++++ +|+||++
T Consensus 16 ~~IgvIGlG~MG~~lA~~La~~------G~~V~v~~r~~~~~~~l~~~~~~~gi~~----~~s~~e~v~~l~~aDvVil~ 85 (480)
T 2zyd_A 16 QQIGVVGMAVMGRNLALNIESR------GYTVSIFNRSREKTEEVIAENPGKKLVP----YYTVKEFVESLETPRRILLM 85 (480)
T ss_dssp BSEEEECCSHHHHHHHHHHHTT------TCCEEEECSSHHHHHHHHHHSTTSCEEE----CSSHHHHHHTBCSSCEEEEC
T ss_pred CeEEEEccHHHHHHHHHHHHhC------CCeEEEEeCCHHHHHHHHhhCCCCCeEE----eCCHHHHHhCCCCCCEEEEE
Confidence 7899999999999999999999 999998888755444444442 7765 5688898877 9999999
Q ss_pred cCC-chHHHHHHHHHhcCCCCcEEEEec-Cchh--hhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceE
Q 014834 186 ISD-AAQADNYEKIFSCMKPNSILGLSH-GFLL--GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINS 261 (417)
Q Consensus 186 vpd-~~~~~Vl~eI~~~lk~gaiLi~a~-G~~i--~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~ 261 (417)
||+ +...++++++.+.+++|++|++++ |... ..+.+ . ....++.++ .+|...+... ... |. .
T Consensus 86 Vp~~~~v~~vl~~l~~~l~~g~iIId~s~g~~~~t~~l~~-~-l~~~g~~~v-~~pv~gg~~~---a~~-------g~-~ 151 (480)
T 2zyd_A 86 VKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNR-E-LSAEGFNFI-GTGVSGGEEG---ALK-------GP-S 151 (480)
T ss_dssp SCSSSHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHH-H-HHHTTCEEE-EEEEESHHHH---HHH-------CC-E
T ss_pred CCCHHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHH-H-HHHCCCCee-CCccccCHhH---Hhc-------CC-e
Confidence 999 567889999999999999888655 4421 22222 1 111345666 4575444331 122 34 3
Q ss_pred EEeecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHH-----------HHHHHHHH---HHH-
Q 014834 262 SFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHG-----------IVESLFRR---FTE- 326 (417)
Q Consensus 262 liav~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA-----------~iea~~d~---~v~- 326 (417)
+.+.. +.++.+.+..++..+|.... . -|......++ .|..+. ++.++.|. +++
T Consensus 152 -i~~gg--~~~~~~~v~~ll~~~g~~~~-d----Ge~~v~~~g~----~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~ 219 (480)
T 2zyd_A 152 -IMPGG--QKEAYELVAPILTKIAAVAE-D----GEPCVTYIGA----DGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGG 219 (480)
T ss_dssp -EEEES--CHHHHHHHHHHHHHHSCBCT-T----SCBSBCCCBS----TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -EEecC--CHHHHHHHHHHHHHHhcccc-C----CCceEEEECC----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23343 47889999999999996300 0 0000111222 222222 34555555 788
Q ss_pred cCCCHHHHHHHHH
Q 014834 327 NGMSEDLAYKNTV 339 (417)
Q Consensus 327 ~Gl~~e~A~~~~~ 339 (417)
.|++++++.....
T Consensus 220 lGl~~~~~~~l~~ 232 (480)
T 2zyd_A 220 LNLTNEELAQTFT 232 (480)
T ss_dssp HCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHH
Confidence 5999999887663
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.5e-12 Score=125.24 Aligned_cols=197 Identities=16% Similarity=0.204 Sum_probs=124.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCch-
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA- 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~- 190 (417)
+||+|||+|.||.+++.+|.+. |++|.+++++.+ ..+...+.|+.. ..+++++++++|+||+++|+..
T Consensus 6 m~i~iiG~G~~G~~~a~~l~~~------g~~V~~~~~~~~-~~~~~~~~g~~~----~~~~~~~~~~~D~vi~~v~~~~~ 74 (299)
T 1vpd_A 6 MKVGFIGLGIMGKPMSKNLLKA------GYSLVVSDRNPE-AIADVIAAGAET----ASTAKAIAEQCDVIITMLPNSPH 74 (299)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT------TCEEEEECSCHH-HHHHHHHTTCEE----CSSHHHHHHHCSEEEECCSSHHH
T ss_pred ceEEEECchHHHHHHHHHHHhC------CCEEEEEeCCHH-HHHHHHHCCCee----cCCHHHHHhCCCEEEEECCCHHH
Confidence 5899999999999999999998 999887776533 345555568775 5688899999999999999554
Q ss_pred HHHHH---HHHHhcCCCCcEEEEecCc-h--hhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEe
Q 014834 191 QADNY---EKIFSCMKPNSILGLSHGF-L--LGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (417)
Q Consensus 191 ~~~Vl---~eI~~~lk~gaiLi~a~G~-~--i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~lia 264 (417)
...++ +++.+.+++|++|+..+.. . ...+.+ .....++.++.. |-.++.. ....+ +... ++
T Consensus 75 ~~~~~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~--~~~~~g~~~~~~-pv~~~~~---~~~~~------~~~~-~~ 141 (299)
T 1vpd_A 75 VKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISD--ALKAKGVEMLDA-PVSGGEP---KAIDG------TLSV-MV 141 (299)
T ss_dssp HHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHH--HHHTTTCEEEEC-CEESHHH---HHHHT------CEEE-EE
T ss_pred HHHHHhCcchHhhcCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCeEEEe-cCCCCHh---HHhcC------CEEE-Ee
Confidence 56677 5788899999988755443 2 223322 111234566543 4333322 11122 3444 33
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhh-hchHHH-HHHHHHHH---HHHcCCCHHHHHHHHH
Q 014834 265 VHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGIL-LGAVHG-IVESLFRR---FTENGMSEDLAYKNTV 339 (417)
Q Consensus 265 v~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L-~G~~pA-~iea~~d~---~v~~Gl~~e~A~~~~~ 339 (417)
.. +.+..+.+..++..+|... +... +..... ..-+ .+...+ ++.++.|. +++.|+++++++..+.
T Consensus 142 -~~--~~~~~~~~~~ll~~~g~~~-~~~~---~~~~~~---~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~ 211 (299)
T 1vpd_A 142 -GG--DKAIFDKYYDLMKAMAGSV-VHTG---DIGAGN---VTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIR 211 (299)
T ss_dssp -ES--CHHHHHHHHHHHHTTEEEE-EEEE---STTHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHT
T ss_pred -CC--CHHHHHHHHHHHHHHcCCe-EEeC---CcCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 22 5788899999999999631 1110 111110 0111 122222 34444444 8899999999888776
Q ss_pred HHH
Q 014834 340 ECI 342 (417)
Q Consensus 340 q~~ 342 (417)
++.
T Consensus 212 ~~~ 214 (299)
T 1vpd_A 212 GGL 214 (299)
T ss_dssp TST
T ss_pred ccC
Confidence 654
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-12 Score=136.82 Aligned_cols=191 Identities=15% Similarity=0.051 Sum_probs=123.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHH-H---cCceecCCCcCCHHhhcCc---CCEEEE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-A---AGFTEENGTLGDIYETISG---SDLVLL 184 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~-~---~G~~~~~~~~~s~~Ea~~~---ADIViL 184 (417)
++|||||+|+||.++|++|.+. |++|.+++|+.++..+... + .|+.. ..+++|++++ +|+||+
T Consensus 11 ~~IgvIGlG~MG~~lA~~La~~------G~~V~v~dr~~~~~~~l~~~~~~~~gi~~----~~s~~e~v~~l~~aDvVil 80 (497)
T 2p4q_A 11 ADFGLIGLAVMGQNLILNAADH------GFTVCAYNRTQSKVDHFLANEAKGKSIIG----ATSIEDFISKLKRPRKVML 80 (497)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSSHHHHHHHHTTTTTSSEEC----CSSHHHHHHTSCSSCEEEE
T ss_pred CCEEEEeeHHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHcccccCCCeEE----eCCHHHHHhcCCCCCEEEE
Confidence 6899999999999999999999 9999988887655433333 2 46664 5688898877 999999
Q ss_pred ccCCc-hHHHHHHHHHhcCCCCcEEEEecCchh---hhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCce
Q 014834 185 LISDA-AQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (417)
Q Consensus 185 avpd~-~~~~Vl~eI~~~lk~gaiLi~a~G~~i---~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~ 260 (417)
+||+. ...++++++.+.+++|++|++++.... ..+.+ . ....++.++ .+|-..+.. .... |.
T Consensus 81 ~Vp~~~~v~~vl~~l~~~l~~g~iIId~s~~~~~~~~~l~~-~-l~~~g~~~v-~~pVsgg~~---~a~~-------G~- 146 (497)
T 2p4q_A 81 LVKAGAPVDALINQIVPLLEKGDIIIDGGNSHFPDSNRRYE-E-LKKKGILFV-GSGVSGGEE---GARY-------GP- 146 (497)
T ss_dssp CCCSSHHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHH-H-HHHTTCEEE-EEEEESHHH---HHHH-------CC-
T ss_pred EcCChHHHHHHHHHHHHhCCCCCEEEECCCCChhHHHHHHH-H-HHHcCCcee-CCCcccChh---Hhhc-------CC-
Confidence 99995 677899999999999999887665422 22222 0 111345666 346333322 1122 34
Q ss_pred EEEeecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHH-----------HHHHHHHH---HHH
Q 014834 261 SSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHG-----------IVESLFRR---FTE 326 (417)
Q Consensus 261 ~liav~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA-----------~iea~~d~---~v~ 326 (417)
. +.+.. +.++.+.+..++..+|... + -|.....+++ .|.++. ++.++.|. +.+
T Consensus 147 ~-im~gg--~~e~~~~v~~ll~~~g~~~--d----Ge~~v~~vg~----~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~ 213 (497)
T 2p4q_A 147 S-LMPGG--SEEAWPHIKNIFQSISAKS--D----GEPCCEWVGP----AGAGHYVKMVHNGIEYGDMQLICEAYDIMKR 213 (497)
T ss_dssp E-EEEEE--CGGGHHHHHHHHHHHSCEE--T----TEESCCCCEE----TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred e-EEecC--CHHHHHHHHHHHHHhcCcc--C----CCCceEEECC----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 22333 4678899999999999630 0 0000111221 122222 24454444 788
Q ss_pred -cCCCHHHHHHHHH
Q 014834 327 -NGMSEDLAYKNTV 339 (417)
Q Consensus 327 -~Gl~~e~A~~~~~ 339 (417)
.|++++++.....
T Consensus 214 ~lGl~~~~~~~~~~ 227 (497)
T 2p4q_A 214 LGGFTDKEISDVFA 227 (497)
T ss_dssp TTCCCHHHHHHHHH
T ss_pred ccCCCHHHHHHHHH
Confidence 5999998887663
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.6e-12 Score=129.26 Aligned_cols=150 Identities=17% Similarity=0.145 Sum_probs=103.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcC--------------ceecCCCcCCHHhhcC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG--------------FTEENGTLGDIYETIS 177 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G--------------~~~~~~~~~s~~Ea~~ 177 (417)
+||+|||+|+||.++|.+|.+. |++|.+++|+.++ .+...+.| +.. ..+++++++
T Consensus 16 ~kI~iIG~G~mG~~la~~L~~~------G~~V~~~~r~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 84 (366)
T 1evy_A 16 NKAVVFGSGAFGTALAMVLSKK------CREVCVWHMNEEE-VRLVNEKRENVLFLKGVQLASNITF----TSDVEKAYN 84 (366)
T ss_dssp EEEEEECCSHHHHHHHHHHTTT------EEEEEEECSCHHH-HHHHHHHTBCTTTSTTCBCCTTEEE----ESCHHHHHT
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCEEEEEECCHHH-HHHHHHcCcccccccccccccceee----eCCHHHHHc
Confidence 4999999999999999999998 9999888776433 33333333 222 357888899
Q ss_pred cCCEEEEccCCchHHHHHHH----HHhcCCC-CcEEEEec-Cchhhhh---hhc-ccCCCCCccEEEeccCCCchhHHHH
Q 014834 178 GSDLVLLLISDAAQADNYEK----IFSCMKP-NSILGLSH-GFLLGHL---QSI-GLDFPKNIGVIAVCPKGMGPSVRRL 247 (417)
Q Consensus 178 ~ADIViLavpd~~~~~Vl~e----I~~~lk~-gaiLi~a~-G~~i~~~---~~~-~i~~~~dv~VI~v~Pntpg~~vr~l 247 (417)
++|+||+++|+....+++++ |.+++++ +++|+... |+..... .+. ...++.....++.+|+.+...
T Consensus 85 ~aDvVilav~~~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~~~~~~~~~~l~~~~~~~~~~v~~gp~~~~~~---- 160 (366)
T 1evy_A 85 GAEIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFAIEV---- 160 (366)
T ss_dssp TCSSEEECCCHHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCCHHHH----
T ss_pred CCCEEEECCChHHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCCccccCHHHHHHHHCCCCcEEEEeCCChHHHH----
Confidence 99999999999888899998 9999988 88776554 8754211 010 002232223578889876543
Q ss_pred HhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhC
Q 014834 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALG 285 (417)
Q Consensus 248 y~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG 285 (417)
+.|.+.++.+. ..+.+..+.+..++...|
T Consensus 161 --------~~g~~~~~~~~-~~~~~~~~~v~~ll~~~g 189 (366)
T 1evy_A 161 --------ATGVFTCVSIA-SADINVARRLQRIMSTGD 189 (366)
T ss_dssp --------HTTCCEEEEEE-CSSHHHHHHHHHHHSCTT
T ss_pred --------HhCCceEEEEe-cCCHHHHHHHHHHhcCCC
Confidence 23454433333 235678888899999883
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.40 E-value=3.4e-12 Score=124.25 Aligned_cols=155 Identities=12% Similarity=0.067 Sum_probs=104.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEec--CChhhHHHHHHcCceecC-------CCcC--CHHhhcCcCC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR--KGSRSFAEARAAGFTEEN-------GTLG--DIYETISGSD 180 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r--~~s~s~~~A~~~G~~~~~-------~~~~--s~~Ea~~~AD 180 (417)
+||+|||+|+||.++|.+|.+. |++|++++| +. ...+...+.|..... .... ++.++++++|
T Consensus 1 m~I~iiG~G~mG~~~a~~L~~~------g~~V~~~~r~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D 73 (335)
T 1txg_A 1 MIVSILGAGAMGSALSVPLVDN------GNEVRIWGTEFDT-EILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAE 73 (335)
T ss_dssp CEEEEESCCHHHHHHHHHHHHH------CCEEEEECCGGGH-HHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCS
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCeEEEEEccCCH-HHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCC
Confidence 4899999999999999999999 999988877 43 334445555531100 0123 6778889999
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEec-Cc------hhhhhhhccc-CCCC-CccEEEeccCCCchhHHHHHhhc
Q 014834 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH-GF------LLGHLQSIGL-DFPK-NIGVIAVCPKGMGPSVRRLYVQG 251 (417)
Q Consensus 181 IViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~-G~------~i~~~~~~~i-~~~~-dv~VI~v~Pntpg~~vr~ly~~G 251 (417)
+||+++|+....++++++.+ ++++++|+... |+ ....+.+... .++. ..-.++.+|+.+...
T Consensus 74 ~vi~~v~~~~~~~v~~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~p~~~~~~-------- 144 (335)
T 1txg_A 74 VVLLGVSTDGVLPVMSRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAREV-------- 144 (335)
T ss_dssp EEEECSCGGGHHHHHHHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCHHHH--------
T ss_pred EEEEcCChHHHHHHHHHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHHhcCCCCcEEEEECCCcHHHH--------
Confidence 99999999999999999999 99999877554 87 2223322000 1111 113567888775433
Q ss_pred ccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 252 ~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~ 287 (417)
+.|.+..+.+.. .+.+..+.+..++...|..
T Consensus 145 ----~~g~~~~~~~~~-~~~~~~~~~~~ll~~~g~~ 175 (335)
T 1txg_A 145 ----AKRMPTTVVFSS-PSESSANKMKEIFETEYFG 175 (335)
T ss_dssp ----HTTCCEEEEEEC-SCHHHHHHHHHHHCBTTEE
T ss_pred ----HccCCcEEEEEe-CCHHHHHHHHHHhCCCcEE
Confidence 234533233333 2567888889999988853
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.5e-12 Score=126.71 Aligned_cols=152 Identities=13% Similarity=0.174 Sum_probs=105.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec--------C--CCcCCHHhhcCcCCE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--------N--GTLGDIYETISGSDL 181 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~--------~--~~~~s~~Ea~~~ADI 181 (417)
+||+|||+|+||.++|..|.++ |++|.+++|+.+ ..+...+.|.... + ....+++++++++|+
T Consensus 30 mkI~VIGaG~mG~alA~~La~~------G~~V~l~~r~~~-~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDv 102 (356)
T 3k96_A 30 HPIAILGAGSWGTALALVLARK------GQKVRLWSYESD-HVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTD 102 (356)
T ss_dssp SCEEEECCSHHHHHHHHHHHTT------TCCEEEECSCHH-HHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCE
T ss_pred CeEEEECccHHHHHHHHHHHHC------CCeEEEEeCCHH-HHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCE
Confidence 6899999999999999999999 999988877643 3344444332100 0 013578899999999
Q ss_pred EEEccCCchHHHHHHHHHhcCCCCcEEE-EecCchhh------hhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccc
Q 014834 182 VLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFLLG------HLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEI 254 (417)
Q Consensus 182 ViLavpd~~~~~Vl~eI~~~lk~gaiLi-~a~G~~i~------~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~ 254 (417)
||+++|++...+++++|.++++++++|+ .+.|+... .+.+ .+|..--.++..|+....+
T Consensus 103 VilaVp~~~~~~vl~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~---~l~~~~~~vlsgP~~a~ev----------- 168 (356)
T 3k96_A 103 ILIVVPSFAFHEVITRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVAT---ELGQVPMAVISGPSLATEV----------- 168 (356)
T ss_dssp EEECCCHHHHHHHHHHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHH---HHCSCCEEEEESSCCHHHH-----------
T ss_pred EEECCCHHHHHHHHHHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHH---HcCCCCEEEEECccHHHHH-----------
Confidence 9999999999999999999999998765 66777643 2322 2232223567888775443
Q ss_pred cCCCceEEEeecCCCCHHHHHHHHHHHHHhCC
Q 014834 255 NGAGINSSFAVHQDVDGRATNVALGWSVALGS 286 (417)
Q Consensus 255 ~G~Gv~~liav~~dvsgea~e~a~~L~~alG~ 286 (417)
+.|.+..+.+.. .+.+..+.+..++...|.
T Consensus 169 -~~g~pt~~via~-~~~~~~~~v~~lf~~~~~ 198 (356)
T 3k96_A 169 -AANLPTAVSLAS-NNSQFSKDLIERLHGQRF 198 (356)
T ss_dssp -HTTCCEEEEEEE-SCHHHHHHHHHHHCCSSE
T ss_pred -HcCCCeEEEEec-CCHHHHHHHHHHhCCCCe
Confidence 245555444433 245677777888876664
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.6e-12 Score=125.30 Aligned_cols=195 Identities=16% Similarity=0.088 Sum_probs=124.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCc-h
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA-A 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~-~ 190 (417)
+||+|||+|+||.++|++|.+. |++|++++|+.+ ..+...+.|+.. ..+++|++++||+||+++|+. .
T Consensus 32 ~~I~iIG~G~mG~~~a~~l~~~------G~~V~~~dr~~~-~~~~l~~~g~~~----~~~~~e~~~~aDvVi~~vp~~~~ 100 (320)
T 4dll_A 32 RKITFLGTGSMGLPMARRLCEA------GYALQVWNRTPA-RAASLAALGATI----HEQARAAARDADIVVSMLENGAV 100 (320)
T ss_dssp SEEEEECCTTTHHHHHHHHHHT------TCEEEEECSCHH-HHHHHHTTTCEE----ESSHHHHHTTCSEEEECCSSHHH
T ss_pred CEEEEECccHHHHHHHHHHHhC------CCeEEEEcCCHH-HHHHHHHCCCEe----eCCHHHHHhcCCEEEEECCCHHH
Confidence 8999999999999999999999 999988877644 445555668775 678999999999999999975 5
Q ss_pred HHHHHH--HHHhcCCCCcEEEEecCchhhhhhhc-ccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeecC
Q 014834 191 QADNYE--KIFSCMKPNSILGLSHGFLLGHLQSI-GLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (417)
Q Consensus 191 ~~~Vl~--eI~~~lk~gaiLi~a~G~~i~~~~~~-~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~ 267 (417)
..+++. ++.+.+++|++|++.+.......... ......++.++. +|-..+.. .-.. |-..++ +..
T Consensus 101 ~~~v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~---~a~~-------g~l~i~-~gg 168 (320)
T 4dll_A 101 VQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALGIAHLD-TPVSGGTV---GAEQ-------GTLVIM-AGG 168 (320)
T ss_dssp HHHHHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE-CCEECHHH---HHHH-------TCEEEE-EES
T ss_pred HHHHHcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCEEEe-CCCcCCHh---HHhc-------CCeeEE-eCC
Confidence 567777 78889999999998877643221110 001123455654 35332222 1122 232323 233
Q ss_pred CCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhh-hchHHH----HHHHHHHHHHHcCCCHHHHHHHHH
Q 014834 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGIL-LGAVHG----IVESLFRRFTENGMSEDLAYKNTV 339 (417)
Q Consensus 268 dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L-~G~~pA----~iea~~d~~v~~Gl~~e~A~~~~~ 339 (417)
+.++.+.+..++..+ .. ++... ... -++..-+ .+...+ ++.-++..+.+.|+++++.+....
T Consensus 169 --~~~~~~~~~~ll~~~-~~-~~~~g---~~g---~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~ 235 (320)
T 4dll_A 169 --KPADFERSLPLLKVF-GR-ATHVG---PHG---SGQLTKLANQMIVGITIGAVAEALLFATKGGADMAKVKEAIT 235 (320)
T ss_dssp --CHHHHHHHHHHHHHH-EE-EEEEE---STT---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHT
T ss_pred --CHHHHHHHHHHHHhc-CC-EEEeC---Ccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 467899999999999 43 22211 100 0111111 122222 233345567889999998877544
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=7.9e-12 Score=123.15 Aligned_cols=149 Identities=9% Similarity=0.028 Sum_probs=104.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC-------cEEEEEecCChh----hHHHHHHcC--------------ceecC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-------IVVKVGLRKGSR----SFAEARAAG--------------FTEEN 166 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G-------~~ViVg~r~~s~----s~~~A~~~G--------------~~~~~ 166 (417)
+||+|||+|+||.++|.+|.++ | ++|.+++|+... ..+...+.+ +..
T Consensus 9 mkI~iIG~G~mG~~~a~~l~~~------g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-- 80 (354)
T 1x0v_A 9 KKVCIVGSGNWGSAIAKIVGGN------AAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVA-- 80 (354)
T ss_dssp EEEEEECCSHHHHHHHHHHHHH------HHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEE--
T ss_pred CeEEEECCCHHHHHHHHHHHhc------CCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEE--
Confidence 6999999999999999999998 8 889888776540 223222221 221
Q ss_pred CCcCCHHhhcCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEE-EecCchh-----h----hhhhcccCCCCCccEEEec
Q 014834 167 GTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFLL-----G----HLQSIGLDFPKNIGVIAVC 236 (417)
Q Consensus 167 ~~~~s~~Ea~~~ADIViLavpd~~~~~Vl~eI~~~lk~gaiLi-~a~G~~i-----~----~~~~~~i~~~~dv~VI~v~ 236 (417)
..+++++++++|+||+++|++...+++++|.++++++++|+ .+.|+.+ . .+.+ .++.+ ..++.+
T Consensus 81 --~~~~~~~~~~aD~Vilav~~~~~~~v~~~i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~---~~~~~-~~v~~g 154 (354)
T 1x0v_A 81 --VPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGE---RLGIP-MSVLMG 154 (354)
T ss_dssp --ESSHHHHHTTCSEEEECCCGGGHHHHHHHHTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHH---HHTCC-EEEEEC
T ss_pred --EcCHHHHHcCCCEEEEeCCHHHHHHHHHHHHhhCCCCCEEEEECCccCCCCCccccHHHHHHH---HcCCC-EEEEEC
Confidence 35788889999999999999988999999999999999766 5557753 1 1111 12322 467889
Q ss_pred cCCCchhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 237 Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~ 287 (417)
|+++... +.|.+..+.+. ..+.+..+.+..++...|..
T Consensus 155 p~~a~~v------------~~g~~~~~~~~-~~~~~~~~~v~~ll~~~g~~ 192 (354)
T 1x0v_A 155 ANIASEV------------ADEKFCETTIG-CKDPAQGQLLKELMQTPNFR 192 (354)
T ss_dssp SCCHHHH------------HTTCCEEEEEE-CSSHHHHHHHHHHHCBTTEE
T ss_pred CCcHHHH------------HhcCCceEEEE-ECCHHHHHHHHHHhCCCCEE
Confidence 9887544 24554433333 23567888888999888753
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.39 E-value=7.3e-12 Score=125.31 Aligned_cols=148 Identities=10% Similarity=-0.006 Sum_probs=103.8
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCC-------cEEEEEecCCh-----hhHHHHHHc--------------Ccee
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD-------IVVKVGLRKGS-----RSFAEARAA--------------GFTE 164 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G-------~~ViVg~r~~s-----~s~~~A~~~--------------G~~~ 164 (417)
|+||+|||+|+||.++|.+|.++ | ++|.+++|..+ .. +...+. ++..
T Consensus 21 ~~kI~iIGaG~mG~alA~~L~~~------G~~~~~~~~~V~~~~r~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~i~~ 93 (375)
T 1yj8_A 21 PLKISILGSGNWASAISKVVGTN------AKNNYLFENEVRMWIRDEFVNGERMV-DIINNKHENTKYLKGVPLPHNIVA 93 (375)
T ss_dssp CBCEEEECCSHHHHHHHHHHHHH------HHHCTTBCSCEEEECCSCC---CCHH-HHHHHHCBCTTTSTTCBCCTTEEE
T ss_pred CCEEEEECcCHHHHHHHHHHHHc------CCccCCCCCeEEEEECChhhhhHHHH-HHHHhcCcccccCCcccCcCCeEE
Confidence 46899999999999999999998 8 88988887644 32 222222 2222
Q ss_pred cCCCcCCHHhhcCcCCEEEEccCCchHHHHHHHHHh----cCCCCcEEEEe-cCchhh---------hhhhcccCCCCCc
Q 014834 165 ENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFS----CMKPNSILGLS-HGFLLG---------HLQSIGLDFPKNI 230 (417)
Q Consensus 165 ~~~~~~s~~Ea~~~ADIViLavpd~~~~~Vl~eI~~----~lk~gaiLi~a-~G~~i~---------~~~~~~i~~~~dv 230 (417)
+.+++++++++|+||++||++...+++++|.+ .++++++|+.. .|+... .+.. .++.+
T Consensus 94 ----~~~~~ea~~~aDvVilav~~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~~~~~~~~l~~~l~~---~~~~~- 165 (375)
T 1yj8_A 94 ----HSDLASVINDADLLIFIVPCQYLESVLASIKESESIKIASHAKAISLTKGFIVKKNQMKLCSNYISD---FLNIP- 165 (375)
T ss_dssp ----ESSTHHHHTTCSEEEECCCHHHHHHHHHHHTC---CCCCTTCEEEECCCSCEEETTEEECHHHHHHH---HSSSC-
T ss_pred ----ECCHHHHHcCCCEEEEcCCHHHHHHHHHHHhhhhhccCCCCCEEEEeCCccccCCccccCHHHHHHH---HcCCC-
Confidence 35678889999999999999888999999999 99999977644 476541 1111 12322
Q ss_pred cEEEeccCCCchhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCC
Q 014834 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS 286 (417)
Q Consensus 231 ~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~ 286 (417)
-.++.+|+.+... +.|.+..+.+.. .+.+..+.+..++...|.
T Consensus 166 ~~v~~gp~~a~~v------------~~g~~~~~~~~~-~~~~~~~~v~~ll~~~g~ 208 (375)
T 1yj8_A 166 CSALSGANIAMDV------------AMENFSEATIGG-NDKDSLVIWQRVFDLPYF 208 (375)
T ss_dssp EEEEECSCCHHHH------------HTTCCEEEEEEC-SCHHHHHHHHHHHCBTTE
T ss_pred EEEEeCCchHHHH------------HhCCCeEEEEec-CCHHHHHHHHHHhCCCCe
Confidence 3567889886544 234554333332 356788888889988874
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.38 E-value=3.6e-12 Score=120.65 Aligned_cols=185 Identities=16% Similarity=0.130 Sum_probs=112.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC-ChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~-~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~ 190 (417)
+||+|||+|+||.++|.+|.+. |++|+++++. .....+...+.|+. .+++++++++|+||+++|+..
T Consensus 1 M~I~iIG~G~mG~~la~~l~~~------g~~V~~~~~~~~~~~~~~~~~~g~~------~~~~~~~~~aDvvi~~v~~~~ 68 (264)
T 1i36_A 1 LRVGFIGFGEVAQTLASRLRSR------GVEVVTSLEGRSPSTIERARTVGVT------ETSEEDVYSCPVVISAVTPGV 68 (264)
T ss_dssp CEEEEESCSHHHHHHHHHHHHT------TCEEEECCTTCCHHHHHHHHHHTCE------ECCHHHHHTSSEEEECSCGGG
T ss_pred CeEEEEechHHHHHHHHHHHHC------CCeEEEeCCccCHHHHHHHHHCCCc------CCHHHHHhcCCEEEEECCCHH
Confidence 4899999999999999999999 9998875442 23334444455664 367788899999999999998
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCchh---hhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeecC
Q 014834 191 QADNYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (417)
Q Consensus 191 ~~~Vl~eI~~~lk~gaiLi~a~G~~i---~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~ 267 (417)
+.+.+.++.+.+++ +|++.++... ..+.+ .+++. .++. +|-..++. ... .|.+ +++...
T Consensus 69 ~~~~~~~~~~~~~~--~vi~~s~~~~~~~~~l~~---~~~~~-g~~~-~~v~~~~~---~~~-------~g~~-~~~~g~ 130 (264)
T 1i36_A 69 ALGAARRAGRHVRG--IYVDINNISPETVRMASS---LIEKG-GFVD-AAIMGSVR---RKG-------ADIR-IIASGR 130 (264)
T ss_dssp HHHHHHHHHTTCCS--EEEECSCCCHHHHHHHHH---HCSSS-EEEE-EEECSCHH---HHG-------GGCE-EEEEST
T ss_pred HHHHHHHHHHhcCc--EEEEccCCCHHHHHHHHH---HHhhC-Ceee-eeeeCCcc---ccc-------cCCe-EEecCC
Confidence 77767788888877 7777777643 23333 23332 1332 34222211 111 3455 344333
Q ss_pred CCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHH----HHHHHHHH---HHHcCCCHHHHHHHHHH
Q 014834 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHG----IVESLFRR---FTENGMSEDLAYKNTVE 340 (417)
Q Consensus 268 dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA----~iea~~d~---~v~~Gl~~e~A~~~~~q 340 (417)
+ . +.+.. +..+|.. ++.. .++ .+....+..+.++ ++.++.|. +++.|++++ ++....+
T Consensus 131 ~---~--~~~~~-l~~~g~~-~~~~------~~~-~g~~~~~kl~~n~~~~~~~~~~~Ea~~la~~~G~~~~-~~~~~~~ 195 (264)
T 1i36_A 131 D---A--EEFMK-LNRYGLN-IEVR------GRE-PGDASAIKMLRSSYTKGVSALLWETLTAAHRLGLEED-VLEMLEY 195 (264)
T ss_dssp T---H--HHHHG-GGGGTCE-EEEC------SSS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHT
T ss_pred c---H--HHhhh-HHHcCCe-eEEC------CCC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHH
Confidence 2 1 66777 8889863 1111 111 2333332222222 34455555 899999986 7766555
Q ss_pred H
Q 014834 341 C 341 (417)
Q Consensus 341 ~ 341 (417)
+
T Consensus 196 ~ 196 (264)
T 1i36_A 196 T 196 (264)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.38 E-value=7.6e-12 Score=123.25 Aligned_cols=93 Identities=19% Similarity=0.130 Sum_probs=78.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC-cEEEEEecCCh------hhHHHHHHcCceecCCCcC-CHHhhcCcCCEEE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGS------RSFAEARAAGFTEENGTLG-DIYETISGSDLVL 183 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G-~~ViVg~r~~s------~s~~~A~~~G~~~~~~~~~-s~~Ea~~~ADIVi 183 (417)
+||||||+|+||.++|++|.+. | ++|++++++.. ...+...+.|+ . . +++|++++||+||
T Consensus 25 m~IgvIG~G~mG~~lA~~L~~~------G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~-~-----~~s~~e~~~~aDvVi 92 (317)
T 4ezb_A 25 TTIAFIGFGEAAQSIAGGLGGR------NAARLAAYDLRFNDPAASGALRARAAELGV-E-----PLDDVAGIACADVVL 92 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT------TCSEEEEECGGGGCTTTHHHHHHHHHHTTC-E-----EESSGGGGGGCSEEE
T ss_pred CeEEEECccHHHHHHHHHHHHc------CCCeEEEEeCCCccccchHHHHHHHHHCCC-C-----CCCHHHHHhcCCEEE
Confidence 7999999999999999999999 9 99988887641 23444555666 2 4 7889999999999
Q ss_pred EccCCchHHHHHHHHHhcCCCCcEEEEecCchh
Q 014834 184 LLISDAAQADNYEKIFSCMKPNSILGLSHGFLL 216 (417)
Q Consensus 184 Lavpd~~~~~Vl~eI~~~lk~gaiLi~a~G~~i 216 (417)
+++|+....++++++.+.++++++|++.+++..
T Consensus 93 ~avp~~~~~~~~~~i~~~l~~~~ivv~~st~~p 125 (317)
T 4ezb_A 93 SLVVGAATKAVAASAAPHLSDEAVFIDLNSVGP 125 (317)
T ss_dssp ECCCGGGHHHHHHHHGGGCCTTCEEEECCSCCH
T ss_pred EecCCHHHHHHHHHHHhhcCCCCEEEECCCCCH
Confidence 999999999888999999999999998887643
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=99.37 E-value=6.7e-12 Score=120.77 Aligned_cols=196 Identities=15% Similarity=0.096 Sum_probs=123.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCch-
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA- 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~- 190 (417)
+||+|||+|+||.+++.+|.+. |++|.+++++.+ ..+...+.|+.. ..+++++++++|+|++++|+..
T Consensus 5 ~~i~iiG~G~~G~~~a~~l~~~------g~~V~~~~~~~~-~~~~~~~~g~~~----~~~~~~~~~~~D~vi~~vp~~~~ 73 (301)
T 3cky_A 5 IKIGFIGLGAMGKPMAINLLKE------GVTVYAFDLMEA-NVAAVVAQGAQA----CENNQKVAAASDIIFTSLPNAGI 73 (301)
T ss_dssp CEEEEECCCTTHHHHHHHHHHT------TCEEEEECSSHH-HHHHHHTTTCEE----CSSHHHHHHHCSEEEECCSSHHH
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCeEEEEeCCHH-HHHHHHHCCCee----cCCHHHHHhCCCEEEEECCCHHH
Confidence 7899999999999999999998 999887776543 344445557765 5688899999999999998655
Q ss_pred HHHHHH---HHHhcCCCCcEEEEe-cCc--hhhhhhhcccCCC-CCccEEEeccCCCchhHHHHHhhcccccCCCceEEE
Q 014834 191 QADNYE---KIFSCMKPNSILGLS-HGF--LLGHLQSIGLDFP-KNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (417)
Q Consensus 191 ~~~Vl~---eI~~~lk~gaiLi~a-~G~--~i~~~~~~~i~~~-~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~li 263 (417)
...++. ++.+.++++++|+.. .|. ....+.+ .++ ..+.++. +|..++.. .... |...++
T Consensus 74 ~~~v~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~---~~~~~g~~~~~-~p~~~~~~---~a~~-------g~~~~~ 139 (301)
T 3cky_A 74 VETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAK---VAAEKGIDYVD-APVSGGTK---GAEA-------GTLTIM 139 (301)
T ss_dssp HHHHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHH---HHHHTTCEEEE-CCEESHHH---HHHH-------TCEEEE
T ss_pred HHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHH---HHHHcCCeEEE-ccCCCCHH---HHHc-------CCeEEE
Confidence 567775 788899999987754 454 2333332 111 2455553 46544432 2222 343334
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchh-hhchHHH-HHHHHH---HHHHHcCCCHHHHHHHH
Q 014834 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGI-LLGAVHG-IVESLF---RRFTENGMSEDLAYKNT 338 (417)
Q Consensus 264 av~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~-L~G~~pA-~iea~~---d~~v~~Gl~~e~A~~~~ 338 (417)
+ .. +.+..+.+..++..+|....+.. .... +...- +.+...+ ++.++. ..+++.|+++++++..+
T Consensus 140 ~-~g--~~~~~~~v~~ll~~~g~~~~~~~----~~g~---~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~ 209 (301)
T 3cky_A 140 V-GA--SEAVFEKIQPVLSVIGKDIYHVG----DTGA---GDAVKIVNNLLLGCNMASLAEALVLGVKCGLKPETMQEII 209 (301)
T ss_dssp E-ES--CHHHHHHHHHHHHHHEEEEEEEE----STTH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred E-CC--CHHHHHHHHHHHHHhcCCEEEeC----CCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 3 33 57888999999999996411110 0000 00000 1111111 223333 33889999999888776
Q ss_pred HHHH
Q 014834 339 VECI 342 (417)
Q Consensus 339 ~q~~ 342 (417)
.++.
T Consensus 210 ~~~~ 213 (301)
T 3cky_A 210 GKSS 213 (301)
T ss_dssp HTST
T ss_pred HcCC
Confidence 6654
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=4.6e-13 Score=141.09 Aligned_cols=167 Identities=19% Similarity=0.160 Sum_probs=121.3
Q ss_pred hhhccccccccc-chhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcC
Q 014834 92 FIVRGGRDLFKL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170 (417)
Q Consensus 92 ~~vr~g~~~f~~-~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~ 170 (417)
.-+|+|+|.... ....+.| ++|||||+|+||.++|++|+.. |++|+++++.. +.+.+.+.|+.. .
T Consensus 123 ~~~~~g~w~~~~~~~~~l~g-~~vgIIG~G~IG~~vA~~l~~~------G~~V~~~d~~~--~~~~a~~~g~~~-----~ 188 (529)
T 1ygy_A 123 ASLREHTWKRSSFSGTEIFG-KTVGVVGLGRIGQLVAQRIAAF------GAYVVAYDPYV--SPARAAQLGIEL-----L 188 (529)
T ss_dssp HHHHTTCCCGGGCCBCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECTTS--CHHHHHHHTCEE-----C
T ss_pred HHHHhCCCcccCcCccccCC-CEEEEEeeCHHHHHHHHHHHhC------CCEEEEECCCC--ChhHHHhcCcEE-----c
Confidence 356789996432 2368999 9999999999999999999998 99988776653 345567778874 3
Q ss_pred CHHhhcCcCCEEEEccCCc-hHHHHHHH-HHhcCCCCcEEEEec-Cchhhh--hhhcccCCCC------CccEEEeccCC
Q 014834 171 DIYETISGSDLVLLLISDA-AQADNYEK-IFSCMKPNSILGLSH-GFLLGH--LQSIGLDFPK------NIGVIAVCPKG 239 (417)
Q Consensus 171 s~~Ea~~~ADIViLavpd~-~~~~Vl~e-I~~~lk~gaiLi~a~-G~~i~~--~~~~~i~~~~------dv~VI~v~Pnt 239 (417)
+++|++++||+|++++|+. ....++.+ +.+.||+|++|+.++ |-.+.. +.+ .+++ .++|+..+|.
T Consensus 189 ~l~e~~~~aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~ilin~arg~iv~~~aL~~---al~~g~i~ga~lDv~~~eP~- 264 (529)
T 1ygy_A 189 SLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALAD---AITGGHVRAAGLDVFATEPC- 264 (529)
T ss_dssp CHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHH---HHHTSSEEEEEESSCSSSSC-
T ss_pred CHHHHHhcCCEEEECCCCchHHHHHhCHHHHhCCCCCCEEEECCCCchhhHHHHHH---HHHcCCccEEEEeeccCCCC-
Confidence 8999999999999999998 55677764 888999999988655 322211 111 1111 3577888884
Q ss_pred CchhHHHHHhhcccccCCCceEEEeecCC-CCHHHHHH-----HHHHHHHhCCC
Q 014834 240 MGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNV-----ALGWSVALGSP 287 (417)
Q Consensus 240 pg~~vr~ly~~G~~~~G~Gv~~liav~~d-vsgea~e~-----a~~L~~alG~~ 287 (417)
+.+ .+|. +-+++++||.. .+.++.+. +..+...+++.
T Consensus 265 ~~~---~L~~--------~~~vilTPh~~~~t~ea~~~~~~~~~~~l~~~l~~~ 307 (529)
T 1ygy_A 265 TDS---PLFE--------LAQVVVTPHLGASTAEAQDRAGTDVAESVRLALAGE 307 (529)
T ss_dssp SCC---GGGG--------CTTEEECSSCSSCBHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCc---hHHh--------CCCEEEccccCCCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 222 2443 35788999987 67777765 77888888874
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.5e-12 Score=122.23 Aligned_cols=196 Identities=12% Similarity=0.077 Sum_probs=121.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~ 190 (417)
|+||+|||+|+||.+++.+|.+. |++|++++ +.++ .+...+.|+.. ..+++++++++|+||+++|+..
T Consensus 3 ~m~i~iiG~G~~G~~~a~~l~~~------g~~V~~~~-~~~~-~~~~~~~g~~~----~~~~~~~~~~~D~vi~~vp~~~ 70 (295)
T 1yb4_A 3 AMKLGFIGLGIMGSPMAINLARA------GHQLHVTT-IGPV-ADELLSLGAVN----VETARQVTEFADIIFIMVPDTP 70 (295)
T ss_dssp -CEEEECCCSTTHHHHHHHHHHT------TCEEEECC-SSCC-CHHHHTTTCBC----CSSHHHHHHTCSEEEECCSSHH
T ss_pred CCEEEEEccCHHHHHHHHHHHhC------CCEEEEEc-CHHH-HHHHHHcCCcc----cCCHHHHHhcCCEEEEECCCHH
Confidence 47999999999999999999998 99988776 4333 34444557664 5688899999999999998877
Q ss_pred H-HHHHH---HHHhcCCCCcEEEEecCch---hhhhhhcccCCC-CCccEEEeccCCCchhHHHHHhhcccccCCCceEE
Q 014834 191 Q-ADNYE---KIFSCMKPNSILGLSHGFL---LGHLQSIGLDFP-KNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSS 262 (417)
Q Consensus 191 ~-~~Vl~---eI~~~lk~gaiLi~a~G~~---i~~~~~~~i~~~-~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~l 262 (417)
+ .+++. ++.+.+++|++|++.+... ...+.+ .++ ..+.++ -.|...+. ..... |...+
T Consensus 71 ~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~---~~~~~g~~~~-~~p~~~~~---~~a~~-------g~~~~ 136 (295)
T 1yb4_A 71 QVEDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQ---RVNEMGADYL-DAPVSGGE---IGARE-------GTLSI 136 (295)
T ss_dssp HHHHHHHSTTSSTTSCCTTEEEEECSCCCHHHHHHHHH---HHHTTTEEEE-ECCEESHH---HHHHH-------TCEEE
T ss_pred HHHHHHhCchhHhhcCCCCCEEEECCCCCHHHHHHHHH---HHHHcCCeEE-EccCCCCH---HHHHc-------CCeEE
Confidence 4 67887 7888899999887555432 222322 112 234444 23433222 12222 34333
Q ss_pred EeecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccch-hhhchHHH-HHHHHHHH---HHHcCCCHHHHHHH
Q 014834 263 FAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERG-ILLGAVHG-IVESLFRR---FTENGMSEDLAYKN 337 (417)
Q Consensus 263 iav~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t-~L~G~~pA-~iea~~d~---~v~~Gl~~e~A~~~ 337 (417)
++ .. +.+..+.+..++..+|.. ++... +.... ... .+.+...+ ++.++.|. +.+.|+++++++..
T Consensus 137 ~~-~~--~~~~~~~~~~ll~~~g~~-~~~~~---~~~~~---~~~Kl~~n~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~ 206 (295)
T 1yb4_A 137 MV-GG--EQKVFDRVKPLFDILGKN-ITLVG---GNGDG---QTCKVANQIIVALNIEAVSEALVFASKAGADPVRVRQA 206 (295)
T ss_dssp EE-ES--CHHHHHHHHHHHHHHEEE-EEEEE---STTHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred EE-CC--CHHHHHHHHHHHHHhcCC-EEEeC---CCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 33 33 578889999999999963 11110 11110 000 11222222 33444444 88999999988877
Q ss_pred HHHHH
Q 014834 338 TVECI 342 (417)
Q Consensus 338 ~~q~~ 342 (417)
..++.
T Consensus 207 ~~~~~ 211 (295)
T 1yb4_A 207 LMGGF 211 (295)
T ss_dssp HTSSS
T ss_pred HHcCC
Confidence 66544
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.6e-11 Score=127.53 Aligned_cols=193 Identities=13% Similarity=0.068 Sum_probs=124.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHc---CceecCCCcCCHHhhcCc---CCEEEEc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYETISG---SDLVLLL 185 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~---G~~~~~~~~~s~~Ea~~~---ADIViLa 185 (417)
++|||||+|+||.++|++|.+. |++|.+++|+.++..+...+. |+.. ..+++|++++ +|+||++
T Consensus 6 ~~IgvIG~G~mG~~lA~~L~~~------G~~V~v~dr~~~~~~~l~~~~~~~gi~~----~~s~~e~v~~l~~aDvVila 75 (474)
T 2iz1_A 6 ANFGVVGMAVMGKNLALNVESR------GYTVAIYNRTTSKTEEVFKEHQDKNLVF----TKTLEEFVGSLEKPRRIMLM 75 (474)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSHHHHHHHHHHTTTSCEEE----CSSHHHHHHTBCSSCEEEEC
T ss_pred CcEEEEeeHHHHHHHHHHHHhC------CCEEEEEcCCHHHHHHHHHhCcCCCeEE----eCCHHHHHhhccCCCEEEEE
Confidence 6899999999999999999999 999988887655444444443 6664 5688888876 9999999
Q ss_pred cCCc-hHHHHHHHHHhcCCCCcEEEEec-Cch--hhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceE
Q 014834 186 ISDA-AQADNYEKIFSCMKPNSILGLSH-GFL--LGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINS 261 (417)
Q Consensus 186 vpd~-~~~~Vl~eI~~~lk~gaiLi~a~-G~~--i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~ 261 (417)
||+. ...++++++.+.+++|++|++.+ |.. ...+.+ .....++.++ .+|...+... ... |...
T Consensus 76 vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~l~~--~l~~~g~~~v-~~pv~gg~~~---a~~-------g~~i 142 (474)
T 2iz1_A 76 VQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNA--ELADSGINFI-GTGVSGGEKG---ALL-------GPSM 142 (474)
T ss_dssp CCTTHHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHH--HTTTSSCEEE-EEEECSHHHH---HHH-------CCCE
T ss_pred ccCchHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHH--HHHHCCCeEE-CCCCCCChhh---hcc-------CCeE
Confidence 9995 56789999999999999887655 442 222322 1112355665 4676544331 122 3422
Q ss_pred EEeecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHH-----------HHHHHHHH---HHH-
Q 014834 262 SFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHG-----------IVESLFRR---FTE- 326 (417)
Q Consensus 262 liav~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA-----------~iea~~d~---~v~- 326 (417)
+ +.. +.++.+.+..++..+|....+. .+......++ .|..+. ++.++.|. +.+
T Consensus 143 -~-~gg--~~~~~~~v~~ll~~~g~~~~~d----ge~~~~~~g~----~g~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~ 210 (474)
T 2iz1_A 143 -M-PGG--QKEAYDLVAPIFEQIAAKAPQD----GKPCVAYMGA----NGAGHYVKMVHNGIEYGDMQLIAESYDLLKRI 210 (474)
T ss_dssp -E-EEE--CHHHHHHHHHHHHHHSCBCTTT----CCBSBCCCBS----TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -E-ecC--CHHHHHHHHHHHHHHhcccccC----CCceEEEECC----ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 3 233 5788999999999999641000 0000011222 122221 24454444 788
Q ss_pred cCCCHHHHHHHHH
Q 014834 327 NGMSEDLAYKNTV 339 (417)
Q Consensus 327 ~Gl~~e~A~~~~~ 339 (417)
.|++++++.....
T Consensus 211 ~Gl~~~~~~~l~~ 223 (474)
T 2iz1_A 211 LGLSNAEIQAIFE 223 (474)
T ss_dssp SCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHH
Confidence 7999998877664
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.06 E-value=5.5e-14 Score=130.38 Aligned_cols=151 Identities=14% Similarity=0.093 Sum_probs=105.0
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccC
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavp 187 (417)
.++ +||+|||+|+||.+++++|.+. |++|++++|... .+...+.|+.. .+..++++++|+||+++|
T Consensus 17 ~~~-~~I~iIG~G~mG~~la~~L~~~------G~~V~~~~r~~~--~~~~~~~g~~~-----~~~~~~~~~aDvVilav~ 82 (201)
T 2yjz_A 17 EKQ-GVVCIFGTGDFGKSLGLKMLQC------GYSVVFGSRNPQ--VSSLLPRGAEV-----LCYSEAASRSDVIVLAVH 82 (201)
Confidence 455 7999999999999999999998 988888777543 22233346553 377889999999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEE-EecCchh--------hhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCC
Q 014834 188 DAAQADNYEKIFSCMKPNSILG-LSHGFLL--------GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAG 258 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~gaiLi-~a~G~~i--------~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~G 258 (417)
++...+++ ++.+ ++++++|+ ++.|+.. .++++ .++. -++|+.|||+|..........| .
T Consensus 83 ~~~~~~v~-~l~~-~~~~~ivI~~~~G~~~~~~~~~~~~~l~~---~~~~-~~vvra~~n~~a~~~~~g~l~g-----~- 150 (201)
T 2yjz_A 83 REHYDFLA-ELAD-SLKGRVLIDVSNNQKMNQYPESNAEYLAQ---LVPG-AHVVKAFNTISAWALQSGTLDA-----S- 150 (201)
Confidence 98777776 5554 45677655 6778742 34433 3343 4799999999988732111111 0
Q ss_pred ceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 259 INSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 259 v~~liav~~dvsgea~e~a~~L~~alG~~ 287 (417)
...+++ .. +.++.+.+..|+..+|..
T Consensus 151 ~~~~~~-g~--~~~~~~~v~~ll~~~G~~ 176 (201)
T 2yjz_A 151 RQVFVC-GN--DSKAKDRVMDIARTLGLT 176 (201)
Confidence 123233 33 357888999999999964
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.9e-11 Score=122.99 Aligned_cols=151 Identities=16% Similarity=0.112 Sum_probs=107.9
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcC---CEEE
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGS---DLVL 183 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~A---DIVi 183 (417)
-+++ +||||||+|+||.++|++|.+. |++|.+++|+.+ ..+.+.+.|+.. ..+++|+++++ |+||
T Consensus 19 Mm~~-mkIgiIGlG~mG~~~A~~L~~~------G~~V~v~dr~~~-~~~~l~~~g~~~----~~s~~e~~~~a~~~DvVi 86 (358)
T 4e21_A 19 YFQS-MQIGMIGLGRMGADMVRRLRKG------GHECVVYDLNVN-AVQALEREGIAG----ARSIEEFCAKLVKPRVVW 86 (358)
T ss_dssp ---C-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHH-HHHHHHTTTCBC----CSSHHHHHHHSCSSCEEE
T ss_pred hhcC-CEEEEECchHHHHHHHHHHHhC------CCEEEEEeCCHH-HHHHHHHCCCEE----eCCHHHHHhcCCCCCEEE
Confidence 3455 8999999999999999999999 999988877643 455566678775 57899999999 9999
Q ss_pred EccCCchHHHHHHHHHhcCCCCcEEEEecCchhh---hhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCce
Q 014834 184 LLISDAAQADNYEKIFSCMKPNSILGLSHGFLLG---HLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (417)
Q Consensus 184 Lavpd~~~~~Vl~eI~~~lk~gaiLi~a~G~~i~---~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~ 260 (417)
+++|+....++++++.+.+++|++|++.+..... .+.+ ....+++.++- +|-.-+.. .-+. |.
T Consensus 87 ~~vp~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~--~l~~~g~~~vd-apVsGg~~---~a~~-------G~- 152 (358)
T 4e21_A 87 LMVPAAVVDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRAD--QMRAQGITYVD-VGTSGGIF---GLER-------GY- 152 (358)
T ss_dssp ECSCGGGHHHHHHHHGGGCCTTCEEEECSSCCHHHHHHHHH--HHHTTTCEEEE-EEEECGGG---HHHH-------CC-
T ss_pred EeCCHHHHHHHHHHHHhhCCCCCEEEeCCCCChHHHHHHHH--HHHHCCCEEEe-CCCCCCHH---HHhc-------CC-
Confidence 9999997778999999999999999988765421 1211 11234566664 34222221 1122 33
Q ss_pred EEEeecCCCCHHHHHHHHHHHHHhCC
Q 014834 261 SSFAVHQDVDGRATNVALGWSVALGS 286 (417)
Q Consensus 261 ~liav~~dvsgea~e~a~~L~~alG~ 286 (417)
. +.+.. +.++.+.++.++..+|.
T Consensus 153 ~-im~GG--~~~a~~~~~~ll~~lg~ 175 (358)
T 4e21_A 153 C-LMIGG--EKQAVERLDPVFRTLAP 175 (358)
T ss_dssp E-EEEES--CHHHHHHTHHHHHHHSC
T ss_pred e-eeecC--CHHHHHHHHHHHHHhcc
Confidence 3 33344 46899999999999994
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.4e-12 Score=125.83 Aligned_cols=210 Identities=15% Similarity=0.097 Sum_probs=122.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC-cEEEEEecCChhhHHHHHH-cCceecC--CC-------cCCHHhhcCcCC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARA-AGFTEEN--GT-------LGDIYETISGSD 180 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G-~~ViVg~r~~s~s~~~A~~-~G~~~~~--~~-------~~s~~Ea~~~AD 180 (417)
+||+|||+|+||.++|.+|.++... .-| ++|++++| . ...+...+ .|+...+ +. ..+..+.++.+|
T Consensus 9 m~I~iiG~G~mG~~~a~~L~~~~~~-~~g~~~V~~~~r-~-~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D 85 (317)
T 2qyt_A 9 IKIAVFGLGGVGGYYGAMLALRAAA-TDGLLEVSWIAR-G-AHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVGTVD 85 (317)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHH-TTSSEEEEEECC-H-HHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHHCCEE
T ss_pred CEEEEECcCHHHHHHHHHHHhCccc-cCCCCCEEEEEc-H-HHHHHHHhcCCeEEEeCCCCeEEecceEecCccccCCCC
Confidence 5899999999999999999864000 004 68888777 3 33445555 6776411 00 013345678999
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEE-EecCchh-hhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCC
Q 014834 181 LVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFLL-GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAG 258 (417)
Q Consensus 181 IViLavpd~~~~~Vl~eI~~~lk~gaiLi-~a~G~~i-~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~G 258 (417)
+||+++|+....++++++.++++++++|+ +..|+.. ..+.+ .+|+. .+++.+|+.+.......... ..+.|
T Consensus 86 ~vil~vk~~~~~~v~~~i~~~l~~~~~iv~~~nG~~~~~~l~~---~l~~~-~v~~g~~~~~a~~~~pg~~~---~~~~g 158 (317)
T 2qyt_A 86 YILFCTKDYDMERGVAEIRPMIGQNTKILPLLNGADIAERMRT---YLPDT-VVWKGCVYISARKSAPGLIT---LEADR 158 (317)
T ss_dssp EEEECCSSSCHHHHHHHHGGGEEEEEEEEECSCSSSHHHHHTT---TSCTT-TBCEEEEEEEEEEEETTEEE---EEEEE
T ss_pred EEEEecCcccHHHHHHHHHhhcCCCCEEEEccCCCCcHHHHHH---HCCCC-cEEEEEEEEEEEEcCCCEEE---EcCCC
Confidence 99999999999999999999998888665 5678765 34433 34443 56677776554431000000 01234
Q ss_pred ceEEEeec-CCCCHHHHHHHHHHHHHhCCCceeccchhhh-----hhhhccccchhhhchHHHHH------------HHH
Q 014834 259 INSSFAVH-QDVDGRATNVALGWSVALGSPFTFATTLEQE-----YKSDIFGERGILLGAVHGIV------------ESL 320 (417)
Q Consensus 259 v~~liav~-~dvsgea~e~a~~L~~alG~~~~iettf~~e-----~~~dl~ge~t~L~G~~pA~i------------ea~ 320 (417)
...+++.. ...+.+.. .+..++...|....+...+... ..--.++..++++|+.++.+ .-+
T Consensus 159 ~~~~ig~~~~~~~~~~~-~~~~ll~~~g~~~~~~~di~~~~~~Kl~~N~~~~~~~al~g~~~g~~~~~~~~~~~~~~~E~ 237 (317)
T 2qyt_A 159 ELFYFGSGLPEQTDDEV-RLAELLTAAGIRAYNPTDIDWYIMKKFMMISVTATATAYFDKPIGSILTEHEPELLSLLEEV 237 (317)
T ss_dssp EEEEEECCSSSCCHHHH-HHHHHHHHTTCCEECCSCHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHCHHHHHHHHHHH
T ss_pred ceEEEcCCCCCCcCHHH-HHHHHHHHCCCCCEEchHHHHHHHHHHHHHHhhHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 33324433 33345555 7789999998642111110000 00114566677777655532 223
Q ss_pred HHHHHHcCCCHH
Q 014834 321 FRRFTENGMSED 332 (417)
Q Consensus 321 ~d~~v~~Gl~~e 332 (417)
+..+.+.|++++
T Consensus 238 ~~v~~a~G~~~~ 249 (317)
T 2qyt_A 238 AELFRAKYGQVP 249 (317)
T ss_dssp HHHHHHHTSCCC
T ss_pred HHHHHHcCCCCC
Confidence 344467788764
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.4e-12 Score=127.26 Aligned_cols=162 Identities=16% Similarity=0.076 Sum_probs=110.5
Q ss_pred hhhcccccccccchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCC
Q 014834 92 FIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (417)
Q Consensus 92 ~~vr~g~~~f~~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s 171 (417)
.-+|+|+|....+ ..+.| ++|||||+|+||.++|+.|+.. |++|+++++..++ ..+.+.|+.. .+
T Consensus 125 ~~~~~g~w~~~~~-~~l~g-~~vgIIG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~--~~~~~~g~~~-----~~ 189 (313)
T 2ekl_A 125 ALAKSGIFKKIEG-LELAG-KTIGIVGFGRIGTKVGIIANAM------GMKVLAYDILDIR--EKAEKINAKA-----VS 189 (313)
T ss_dssp HHHHTTCCCCCCC-CCCTT-CEEEEESCSHHHHHHHHHHHHT------TCEEEEECSSCCH--HHHHHTTCEE-----CC
T ss_pred HHHHcCCCCCCCC-CCCCC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEECCCcch--hHHHhcCcee-----cC
Confidence 4567889973333 78999 9999999999999999999998 9999877776443 2466778763 48
Q ss_pred HHhhcCcCCEEEEccCCchH-HHHH-HHHHhcCCCCcEEEEecCchhh---hhhh---cccCCCCCccEEEeccCCCchh
Q 014834 172 IYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSHGFLLG---HLQS---IGLDFPKNIGVIAVCPKGMGPS 243 (417)
Q Consensus 172 ~~Ea~~~ADIViLavpd~~~-~~Vl-~eI~~~lk~gaiLi~a~G~~i~---~~~~---~~i~~~~dv~VI~v~Pntpg~~ 243 (417)
+++++++||+|++++|.... ..++ ++..+.||+|++|+.++--.+. .+.+ .+-.-...+||+..+|.. ...
T Consensus 190 l~ell~~aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~-~~~ 268 (313)
T 2ekl_A 190 LEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPK-EEW 268 (313)
T ss_dssp HHHHHHHCSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGGGBCHHHHHHHHHTTCEEEEEESCCSSSSCC-SHH
T ss_pred HHHHHhhCCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCCcEEEEecCCCCCCC-Ccc
Confidence 89999999999999997664 3455 4577889999998865533221 1111 000001135778888844 332
Q ss_pred HHHHHhhcccccCCCceEEEeecCC-CCHHHHHHH
Q 014834 244 VRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVA 277 (417)
Q Consensus 244 vr~ly~~G~~~~G~Gv~~liav~~d-vsgea~e~a 277 (417)
...+|.. -+.+++||.. .|.++.+..
T Consensus 269 ~~~L~~~--------~nviltPH~~~~t~~~~~~~ 295 (313)
T 2ekl_A 269 ELELLKH--------ERVIVTTHIGAQTKEAQKRV 295 (313)
T ss_dssp HHHHHHS--------TTEEECCSCTTCSHHHHHHH
T ss_pred cchHhhC--------CCEEECCccCcCcHHHHHHH
Confidence 2345653 5688999874 444554443
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=3.7e-12 Score=120.99 Aligned_cols=193 Identities=15% Similarity=0.087 Sum_probs=116.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHc---Cc--eecCCCcCCHHhhcCcCCEEEEcc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---GF--TEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~---G~--~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
+||+|||+|+||.++|.+|.+. |++|.+++|+.++..+ .... |. .. .-...+ .++++++|+||+++
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~------g~~V~~~~r~~~~~~~-l~~~~~~~~~~~~-~~~~~~-~~~~~~~d~vi~~v 71 (291)
T 1ks9_A 1 MKITVLGCGALGQLWLTALCKQ------GHEVQGWLRVPQPYCS-VNLVETDGSIFNE-SLTAND-PDFLATSDLLLVTL 71 (291)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCSEEE-EEEECTTSCEEEE-EEEESC-HHHHHTCSEEEECS
T ss_pred CeEEEECcCHHHHHHHHHHHhC------CCCEEEEEcCccceee-EEEEcCCCceeee-eeeecC-ccccCCCCEEEEEe
Confidence 5899999999999999999999 9999888776433211 1111 11 00 001223 46778999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEE-EecCchhh-hhhhcccCCCC---C---ccEEEeccCCCchhHHHHHhhcccccCCC
Q 014834 187 SDAAQADNYEKIFSCMKPNSILG-LSHGFLLG-HLQSIGLDFPK---N---IGVIAVCPKGMGPSVRRLYVQGKEINGAG 258 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiLi-~a~G~~i~-~~~~~~i~~~~---d---v~VI~v~Pntpg~~vr~ly~~G~~~~G~G 258 (417)
|+....++++++.++++++++|+ +..|+... .+.+ .+++ . ....+.+| .+... +.|
T Consensus 72 ~~~~~~~v~~~l~~~l~~~~~vv~~~~g~~~~~~l~~---~~~~~~~g~~~~~~~~~~p-~~~~~------------~~g 135 (291)
T 1ks9_A 72 KAWQVSDAVKSLASTLPVTTPILLIHNGMGTIEELQN---IQQPLLMGTTTHAARRDGN-VIIHV------------ANG 135 (291)
T ss_dssp CGGGHHHHHHHHHTTSCTTSCEEEECSSSCTTGGGTT---CCSCEEEEEECCEEEEETT-EEEEE------------ECC
T ss_pred cHHhHHHHHHHHHhhCCCCCEEEEecCCCCcHHHHHH---hcCCeEEEEEeEccEEcCC-EEEEe------------ccc
Confidence 99999999999999999998665 57787542 3332 3333 0 01234455 33222 356
Q ss_pred ceEEEeecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhh-----hccccchhhhchH-----------HHHHHHHHH
Q 014834 259 INSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKS-----DIFGERGILLGAV-----------HGIVESLFR 322 (417)
Q Consensus 259 v~~liav~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~-----dl~ge~t~L~G~~-----------pA~iea~~d 322 (417)
... +++.. .+.+..+.+..++..+|....+...+...... -.++..++|+|+. ..++.-+..
T Consensus 136 ~~~-i~~~~-~~~~~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl~~n~~~n~~tal~~~~~g~~~~~~~~~~~~~~E~~~ 213 (291)
T 1ks9_A 136 ITH-IGPAR-QQDGDYSYLADILQTVLPDVAWHNNIRAELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAA 213 (291)
T ss_dssp CEE-EEESS-GGGTTCTHHHHHHHTTSSCEEECTTHHHHHHHHHHHHHHHHHHHHHTTCCGGGGGGCHHHHHHHHHHHHH
T ss_pred ceE-EccCC-CCcchHHHHHHHHHhcCCCCeecHHHHHHHHHHHeeeeeecHHHHHHCCCchHHHhHHHHHHHHHHHHHH
Confidence 544 44322 13456677889999998652221111110000 0345555665542 123444556
Q ss_pred HHHHcCCCH
Q 014834 323 RFTENGMSE 331 (417)
Q Consensus 323 ~~v~~Gl~~ 331 (417)
.+.+.|+++
T Consensus 214 va~a~G~~~ 222 (291)
T 1ks9_A 214 VIEREGHHT 222 (291)
T ss_dssp HHHHHTCCC
T ss_pred HHHHcCCCC
Confidence 677889986
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=7.9e-12 Score=130.04 Aligned_cols=148 Identities=16% Similarity=0.047 Sum_probs=102.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH-----cCceecCCCcCCHHhhc---CcCCEEE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----AGFTEENGTLGDIYETI---SGSDLVL 183 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~-----~G~~~~~~~~~s~~Ea~---~~ADIVi 183 (417)
++|||||+|+||.++|++|.+. |++|.+++|+.++. +...+ .|+.. ..+++|++ +++|+||
T Consensus 3 m~IgvIG~G~mG~~lA~~La~~------G~~V~v~dr~~~~~-~~l~~~~~~g~gi~~----~~~~~e~v~~l~~aDvVi 71 (482)
T 2pgd_A 3 ADIALIGLAVMGQNLILNMNDH------GFVVCAFNRTVSKV-DDFLANEAKGTKVLG----AHSLEEMVSKLKKPRRII 71 (482)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSTHHH-HHHHHTTTTTSSCEE----CSSHHHHHHHBCSSCEEE
T ss_pred CeEEEEChHHHHHHHHHHHHHC------CCeEEEEeCCHHHH-HHHHhccccCCCeEE----eCCHHHHHhhccCCCEEE
Confidence 5899999999999999999999 99998888875543 33343 56664 56888887 4899999
Q ss_pred EccCCc-hHHHHHHHHHhcCCCCcEEEEec-Cchh--hhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCc
Q 014834 184 LLISDA-AQADNYEKIFSCMKPNSILGLSH-GFLL--GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (417)
Q Consensus 184 Lavpd~-~~~~Vl~eI~~~lk~gaiLi~a~-G~~i--~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv 259 (417)
++||+. ...++++++.+++++|++|++.+ |... ..+.+ . ....++.++ .+|...+.. ... .|.
T Consensus 72 laVp~~~~v~~vl~~l~~~l~~g~iII~~s~~~~~~~~~l~~-~-l~~~g~~~v-~~pv~g~~~---~a~-------~g~ 138 (482)
T 2pgd_A 72 LLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCR-D-LKDKGILFV-GSGVSGGED---GAR-------YGP 138 (482)
T ss_dssp ECSCTTHHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHH-H-HHHTTCEEE-EEEEESHHH---HHH-------HCC
T ss_pred EeCCChHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHH-H-HHHcCCeEe-CCCCCCChh---hhc-------cCC
Confidence 999996 66789999999999999888654 4422 12221 1 111345666 467544332 112 234
Q ss_pred eEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 260 NSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 260 ~~liav~~dvsgea~e~a~~L~~alG~~ 287 (417)
.++ +.. +.++.+.+..++..+|..
T Consensus 139 -~i~-~gg--~~e~~~~v~~ll~~~g~~ 162 (482)
T 2pgd_A 139 -SLM-PGG--NKEAWPHIKAIFQGIAAK 162 (482)
T ss_dssp -EEE-EEE--CTTTHHHHHHHHHHHSCB
T ss_pred -eEE-eCC--CHHHHHHHHHHHHHhhhh
Confidence 322 233 356888899999999964
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=6e-11 Score=129.22 Aligned_cols=148 Identities=10% Similarity=0.084 Sum_probs=109.6
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHH-----------HHcCc-------------eecC
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGF-------------TEEN 166 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A-----------~~~G~-------------~~~~ 166 (417)
++||+|||+|+||.+||.+|.++ |++|++++++.+. .+.+ .+.|. ..
T Consensus 314 i~kV~VIGaG~MG~~iA~~la~a------G~~V~l~D~~~~~-~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~-- 384 (715)
T 1wdk_A 314 VKQAAVLGAGIMGGGIAYQSASK------GTPILMKDINEHG-IEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRP-- 384 (715)
T ss_dssp CSSEEEECCHHHHHHHHHHHHHT------TCCEEEECSSHHH-HHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEE--
T ss_pred CCEEEEECCChhhHHHHHHHHhC------CCEEEEEECCHHH-HHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEE--
Confidence 58999999999999999999999 9999888776432 2222 22342 21
Q ss_pred CCcCCHHhhcCcCCEEEEccCCchH--HHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchh
Q 014834 167 GTLGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPS 243 (417)
Q Consensus 167 ~~~~s~~Ea~~~ADIViLavpd~~~--~~Vl~eI~~~lk~gaiLi-~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~ 243 (417)
..++ +++++||+||+++|+... .+++.++.++++++++|+ .++++.+..+.+ .+...-+++..||..|...
T Consensus 385 --~~d~-~~~~~aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntStl~i~~la~---~~~~~~~~ig~hf~~P~~~ 458 (715)
T 1wdk_A 385 --TLSY-GDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAK---ALKRPENFVGMHFFNPVHM 458 (715)
T ss_dssp --ESSS-TTGGGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGG---GCSCGGGEEEEECCSSTTT
T ss_pred --ECCH-HHHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCCCHHHHHH---HhcCccceEEEEccCCccc
Confidence 3455 678999999999997764 468889999999999876 567887765544 2223347999999887654
Q ss_pred HHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 244 VRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 244 vr~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~ 287 (417)
+. ..-+......+.+..+.+..++..+|..
T Consensus 459 ------------~~--lvevv~g~~t~~e~~~~~~~l~~~lGk~ 488 (715)
T 1wdk_A 459 ------------MP--LVEVIRGEKSSDLAVATTVAYAKKMGKN 488 (715)
T ss_dssp ------------CC--EEEEEECSSCCHHHHHHHHHHHHHTTCE
T ss_pred ------------Cc--eEEEEECCCCCHHHHHHHHHHHHHhCCE
Confidence 11 1224456667889999999999999964
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.30 E-value=2.7e-11 Score=126.05 Aligned_cols=149 Identities=16% Similarity=0.114 Sum_probs=103.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcC-------ceecCCCcCCHHhhcCc---CCE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-------FTEENGTLGDIYETISG---SDL 181 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G-------~~~~~~~~~s~~Ea~~~---ADI 181 (417)
+||||||+|+||.++|++|.+. |++|.+++|+.++..+...+.| +.. ..+++|++++ +|+
T Consensus 2 MkIgVIG~G~mG~~lA~~La~~------G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~----~~~~~e~v~~l~~aDv 71 (478)
T 1pgj_A 2 MDVGVVGLGVMGANLALNIAEK------GFKVAVFNRTYSKSEEFMKANASAPFAGNLKA----FETMEAFAASLKKPRK 71 (478)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSHHHHHHHHHHTTTSTTGGGEEE----CSCHHHHHHHBCSSCE
T ss_pred CEEEEEChHHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEE----ECCHHHHHhcccCCCE
Confidence 5799999999999999999999 9999888886554444444446 443 5688888774 999
Q ss_pred EEEccCCc-hHHHHHHHHHhcCCCCcEEEEec-Cch--hhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCC
Q 014834 182 VLLLISDA-AQADNYEKIFSCMKPNSILGLSH-GFL--LGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGA 257 (417)
Q Consensus 182 ViLavpd~-~~~~Vl~eI~~~lk~gaiLi~a~-G~~--i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~ 257 (417)
||++||+. ...++++++.+.+++|++|++.+ |.. ...+.+ . ....++.++. +|...+.. ....
T Consensus 72 VilaVp~~~~v~~vl~~l~~~l~~g~iIId~sng~~~~~~~l~~-~-l~~~g~~~v~-~pv~gg~~---~a~~------- 138 (478)
T 1pgj_A 72 ALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQ-Q-LEAAGLRFLG-MGISGGEE---GARK------- 138 (478)
T ss_dssp EEECCCCSHHHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHH-H-HHTTTCEEEE-EEEESHHH---HHHH-------
T ss_pred EEEecCChHHHHHHHHHHHhhCCCCCEEEECCCCChHHHHHHHH-H-HHHCCCeEEE-eeccCCHH---HHhc-------
Confidence 99999996 66789999999999999887654 442 222222 1 1123455553 46544433 1122
Q ss_pred CceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 258 GINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 258 Gv~~liav~~dvsgea~e~a~~L~~alG~~ 287 (417)
|. .++ +.. +.++.+.+..++..+|..
T Consensus 139 g~-~i~-~gg--~~~~~~~v~~ll~~~g~~ 164 (478)
T 1pgj_A 139 GP-AFF-PGG--TLSVWEEIRPIVEAAAAK 164 (478)
T ss_dssp CC-EEE-EEE--CHHHHHHHHHHHHHHSCB
T ss_pred CC-eEe-ccC--CHHHHHHHHHHHHHhccc
Confidence 34 323 233 468899999999999964
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.29 E-value=9.1e-12 Score=122.75 Aligned_cols=159 Identities=18% Similarity=0.096 Sum_probs=108.8
Q ss_pred hhccccccc-ccchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCC
Q 014834 93 IVRGGRDLF-KLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (417)
Q Consensus 93 ~vr~g~~~f-~~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s 171 (417)
-+|+|+|.. ......+.| ++|||||+|+||.++|+.|+.. |++|+++++...+ +.+.+.|+.. .+
T Consensus 124 ~~~~g~w~~~~~~~~~l~g-~~vgIiG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~--~~~~~~g~~~-----~~ 189 (307)
T 1wwk_A 124 KMREGVWAKKEAMGIELEG-KTIGIIGFGRIGYQVAKIANAL------GMNILLYDPYPNE--ERAKEVNGKF-----VD 189 (307)
T ss_dssp HHTTTCCCTTTCCBCCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCH--HHHHHTTCEE-----CC
T ss_pred HHHcCCCCccCcCCcccCC-ceEEEEccCHHHHHHHHHHHHC------CCEEEEECCCCCh--hhHhhcCccc-----cC
Confidence 467889963 122378999 9999999999999999999988 9999877776443 4566778763 48
Q ss_pred HHhhcCcCCEEEEccCCchH-HHHH-HHHHhcCCCCcEEEEecCchh-------hhhhhcccCCCCCccEEEeccCCCch
Q 014834 172 IYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSHGFLL-------GHLQSIGLDFPKNIGVIAVCPKGMGP 242 (417)
Q Consensus 172 ~~Ea~~~ADIViLavpd~~~-~~Vl-~eI~~~lk~gaiLi~a~G~~i-------~~~~~~~i~~~~dv~VI~v~Pntpg~ 242 (417)
+++++++||+|++++|.... ..++ ++..+.||+|++|+.++--.+ ..+.+ +......+||+..+|..+.+
T Consensus 190 l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~-g~i~ga~lDv~~~eP~~~~~ 268 (307)
T 1wwk_A 190 LETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKE-GWIAGAGLDVFEEEPLPKDH 268 (307)
T ss_dssp HHHHHHHCSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHH-TSSSEEEESCCSSSSCCTTC
T ss_pred HHHHHhhCCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHh-CCCcEEEEecCCCCCCCCCC
Confidence 99999999999999998664 4555 357788999999886553221 12222 11111245677777753322
Q ss_pred hHHHHHhhcccccCCCceEEEeecCC-CCHHHHHHH
Q 014834 243 SVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVA 277 (417)
Q Consensus 243 ~vr~ly~~G~~~~G~Gv~~liav~~d-vsgea~e~a 277 (417)
.+|. .-+.+++||.. .|.++.+..
T Consensus 269 ---~L~~--------~~nviltPh~~~~t~~~~~~~ 293 (307)
T 1wwk_A 269 ---PLTK--------FDNVVLTPHIGASTVEAQERA 293 (307)
T ss_dssp ---GGGG--------CTTEEECSSCTTCBHHHHHHH
T ss_pred ---hHHh--------CCCEEECCccccCcHHHHHHH
Confidence 2333 35788999874 344554443
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=99.27 E-value=9.4e-11 Score=122.57 Aligned_cols=149 Identities=17% Similarity=0.069 Sum_probs=103.3
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcC-----ceecCCCcCCHHhhcC---cCCEE
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-----FTEENGTLGDIYETIS---GSDLV 182 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G-----~~~~~~~~~s~~Ea~~---~ADIV 182 (417)
+++|||||+|+||.++|++|.+. |++|++++|+.++. +...+.| +.. ..+++|+++ ++|+|
T Consensus 4 ~~kIgiIGlG~MG~~lA~~L~~~------G~~V~v~dr~~~~~-~~l~~~g~~g~~i~~----~~s~~e~v~~l~~aDvV 72 (484)
T 4gwg_A 4 QADIALIGLAVMGQNLILNMNDH------GFVVCAFNRTVSKV-DDFLANEAKGTKVVG----AQSLKEMVSKLKKPRRI 72 (484)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSTHHH-HHHHHTTTTTSSCEE----CSSHHHHHHTBCSSCEE
T ss_pred CCEEEEEChhHHHHHHHHHHHHC------CCEEEEEeCCHHHH-HHHHhcccCCCceec----cCCHHHHHhhccCCCEE
Confidence 37899999999999999999999 99999888876543 3444332 221 367888876 59999
Q ss_pred EEccCCc-hHHHHHHHHHhcCCCCcEEEEecCchh---hhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCC
Q 014834 183 LLLISDA-AQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAG 258 (417)
Q Consensus 183 iLavpd~-~~~~Vl~eI~~~lk~gaiLi~a~G~~i---~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~G 258 (417)
|+++|+. ...++++++.++|++|++|++.+.... ....+ .....++.++.. |-.-+.. .-+. |
T Consensus 73 il~Vp~~~~v~~vl~~l~~~L~~g~iIId~st~~~~~t~~~~~--~l~~~Gi~fvd~-pVsGg~~---gA~~-------G 139 (484)
T 4gwg_A 73 ILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCR--DLKAKGILFVGS-GVSGGEE---GARY-------G 139 (484)
T ss_dssp EECSCSSHHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHH--HHHHTTCEEEEE-EEESHHH---HHHH-------C
T ss_pred EEecCChHHHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHH--HHHhhccccccC-CccCCHH---HHhc-------C
Confidence 9999996 567899999999999999998776532 11111 011245667653 5222221 2223 2
Q ss_pred ceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 259 INSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 259 v~~liav~~dvsgea~e~a~~L~~alG~~ 287 (417)
. + +.+.. +.++.+.++.++..+|..
T Consensus 140 ~-~-im~GG--~~ea~~~v~pll~~ig~~ 164 (484)
T 4gwg_A 140 P-S-LMPGG--NKEAWPHIKTIFQGIAAK 164 (484)
T ss_dssp C-E-EEEEE--CGGGHHHHHHHHHHHSCB
T ss_pred C-e-eecCC--CHHHHHHHHHHHHHhcCc
Confidence 3 3 33444 358899999999999964
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.8e-10 Score=117.95 Aligned_cols=208 Identities=13% Similarity=0.075 Sum_probs=129.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH-----------cCceec-------CCCcCCH
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEE-------NGTLGDI 172 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~-----------~G~~~~-------~~~~~s~ 172 (417)
++||+|||+|.||.++|..|... |++|++++++.+ ..+.+.+ .|.... .....+.
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~~------G~~V~l~D~~~~-~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~ 109 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFARV------GISVVAVESDPK-QLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST 109 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTT------TCEEEEECSSHH-HHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG
T ss_pred CCEEEEECcCHHHHHHHHHHHhC------CCeEEEEECCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH
Confidence 58999999999999999999999 999988776543 2333221 121000 0012455
Q ss_pred HhhcCcCCEEEEccCCchH--HHHHHHHHhcCCCCcEEEE-ecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHh
Q 014834 173 YETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILGL-SHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYV 249 (417)
Q Consensus 173 ~Ea~~~ADIViLavpd~~~--~~Vl~eI~~~lk~gaiLi~-a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~ 249 (417)
+++++||+||+++|.... .+++.++.++++++++|+. ++++.+..+.. .+...-+++..||-.|...
T Consensus 110 -~~~~~aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs~~~~~~la~---~~~~~~~~ig~hf~~P~~~------ 179 (463)
T 1zcj_A 110 -KELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIAS---STDRPQLVIGTHFFSPAHV------ 179 (463)
T ss_dssp -GGGTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHT---TSSCGGGEEEEEECSSTTT------
T ss_pred -HHHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCcCHHHHHH---HhcCCcceEEeecCCCccc------
Confidence 578899999999998753 5688899999999998764 45566655543 2233357899999777544
Q ss_pred hcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchH-HHHHHHHHHHHHHcC
Q 014834 250 QGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAV-HGIVESLFRRFTENG 328 (417)
Q Consensus 250 ~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~-pA~iea~~d~~v~~G 328 (417)
+-..-+......+.+..+.+..++..+|... +... . ..-| +++-+ .+++..++ .+++.|
T Consensus 180 --------~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~-v~v~---~--~~gf-----i~Nrll~~~~~ea~-~l~~~G 239 (463)
T 1zcj_A 180 --------MRLLEVIPSRYSSPTTIATVMSLSKKIGKIG-VVVG---N--CYGF-----VGNRMLAPYYNQGF-FLLEEG 239 (463)
T ss_dssp --------CCEEEEEECSSCCHHHHHHHHHHHHHTTCEE-EEBC---C--STTT-----THHHHHHHHHHHHH-HHHHTT
T ss_pred --------ceeEEEeCCCCCCHHHHHHHHHHHHHhCCEE-EEEC---C--CccH-----HHHHHHHHHHHHHH-HHHHcC
Confidence 1122244566678899999999999999642 1110 1 1112 33322 22333333 345669
Q ss_pred CCHHHHHHHHHHH--HHHHHHHHHHHhcHH
Q 014834 329 MSEDLAYKNTVEC--ITGIISKIISTQGML 356 (417)
Q Consensus 329 l~~e~A~~~~~q~--~~~g~~~li~e~G~~ 356 (417)
+++++.....-.. -. |-..+.-..|++
T Consensus 240 ~~~~~id~~~~~~g~p~-Gp~~l~D~~GlD 268 (463)
T 1zcj_A 240 SKPEDVDGVLEEFGFKM-GPFRVSDLAGLD 268 (463)
T ss_dssp CCHHHHHHHHHHHTCSS-CHHHHHHHHCHH
T ss_pred CCHHHHHHHHHHcCCCC-cHHHHHHHcchH
Confidence 9998765543211 01 334455555663
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=5.9e-12 Score=124.77 Aligned_cols=161 Identities=16% Similarity=0.147 Sum_probs=106.8
Q ss_pred hhhcccccc-cc---cchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEec-CChhhHHHHHHcCceecC
Q 014834 92 FIVRGGRDL-FK---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR-KGSRSFAEARAAGFTEEN 166 (417)
Q Consensus 92 ~~vr~g~~~-f~---~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r-~~s~s~~~A~~~G~~~~~ 166 (417)
.-+|+|+|. +. .....+.| ++|||||+|+||.++|+.|+.. |++|+++++ ...+ ..+.+.|+..
T Consensus 124 ~~~~~g~w~~~~~~~~~~~~l~g-~~vgIIG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~~--~~~~~~g~~~-- 192 (320)
T 1gdh_A 124 KMIRTRSWPGWEPLELVGEKLDN-KTLGIYGFGSIGQALAKRAQGF------DMDIDYFDTHRASS--SDEASYQATF-- 192 (320)
T ss_dssp HHHHTTCCCCCCTTTTCBCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECSSCCCH--HHHHHHTCEE--
T ss_pred HHHHcCCCCccccccccCcCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCCcCh--hhhhhcCcEE--
Confidence 456788895 21 12368999 9999999999999999999988 999988777 5433 3556678764
Q ss_pred CCcCCHHhhcCcCCEEEEccCCchH-HHHH-HHHHhcCCCCcEEEEec-Cc--hhh----hhhhcccCCCCCccEEEecc
Q 014834 167 GTLGDIYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH-GF--LLG----HLQSIGLDFPKNIGVIAVCP 237 (417)
Q Consensus 167 ~~~~s~~Ea~~~ADIViLavpd~~~-~~Vl-~eI~~~lk~gaiLi~a~-G~--~i~----~~~~~~i~~~~dv~VI~v~P 237 (417)
..+++|++++||+|++++|.... ..++ ++..+.||+|++|+.++ |- ... .+.+ +......+||+..+|
T Consensus 193 --~~~l~ell~~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~~-g~i~gA~lDv~~~eP 269 (320)
T 1gdh_A 193 --HDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEA-GRLAYAGFDVFAGEP 269 (320)
T ss_dssp --CSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHH-TSEEEEEESCCTTTT
T ss_pred --cCCHHHHHhhCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHh-CCCcEEEEeCCCCCC
Confidence 44789999999999999997653 4566 35778999999988554 42 111 1211 100012345565667
Q ss_pred CCCchhHHHHHhhcccccCCCceEEEeecCC-CCHHHHHHHH
Q 014834 238 KGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVAL 278 (417)
Q Consensus 238 ntpg~~vr~ly~~G~~~~G~Gv~~liav~~d-vsgea~e~a~ 278 (417)
.+. ..+|. .-+.+++||.. .|.++.+...
T Consensus 270 -~~~---~~L~~--------~~nviltPH~~~~t~~~~~~~~ 299 (320)
T 1gdh_A 270 -NIN---EGYYD--------LPNTFLFPHIGSAATQAREDMA 299 (320)
T ss_dssp -SCC---TTGGG--------CTTEEECSSCTTCBHHHHHHHH
T ss_pred -CCC---Chhhh--------CCCEEECCcCCcCcHHHHHHHH
Confidence 222 12443 35788999874 3445544443
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.2e-11 Score=114.64 Aligned_cols=138 Identities=17% Similarity=0.168 Sum_probs=91.5
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
..+.+ +||+|||+|+||.++|..|.+. |++|++++|... ++++||+||++
T Consensus 15 ~~~~~-~~I~iiG~G~mG~~la~~l~~~------g~~V~~~~~~~~-----------------------~~~~aD~vi~a 64 (209)
T 2raf_A 15 LYFQG-MEITIFGKGNMGQAIGHNFEIA------GHEVTYYGSKDQ-----------------------ATTLGEIVIMA 64 (209)
T ss_dssp ------CEEEEECCSHHHHHHHHHHHHT------TCEEEEECTTCC-----------------------CSSCCSEEEEC
T ss_pred cccCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCHH-----------------------HhccCCEEEEc
Confidence 55667 8999999999999999999999 999887766432 35689999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEE-EecCch---------------hhhhhhcccCCCCCccEEE-eccCCCchhHHHHH
Q 014834 186 ISDAAQADNYEKIFSCMKPNSILG-LSHGFL---------------LGHLQSIGLDFPKNIGVIA-VCPKGMGPSVRRLY 248 (417)
Q Consensus 186 vpd~~~~~Vl~eI~~~lk~gaiLi-~a~G~~---------------i~~~~~~~i~~~~dv~VI~-v~Pntpg~~vr~ly 248 (417)
+|+....++++++.+.++ +++|+ .+.|+. ...+.+ .+| +.+++. ++|. .++.....-
T Consensus 65 v~~~~~~~v~~~l~~~~~-~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~---~l~-~~~vv~~~~~~-~~p~~~~~~ 138 (209)
T 2raf_A 65 VPYPALAALAKQYATQLK-GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQ---QLP-DSQVLKAFNTT-FAATLQSGQ 138 (209)
T ss_dssp SCHHHHHHHHHHTHHHHT-TSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHH---HCT-TSEEEECSTTS-CHHHHHHSE
T ss_pred CCcHHHHHHHHHHHHhcC-CCEEEEECCCCCccccccccCCCCCcHHHHHHH---HCC-CCcEEEeeecc-cHhhccccc
Confidence 998888899999988888 88776 456665 233333 334 467888 4442 222211111
Q ss_pred hhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCC
Q 014834 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS 286 (417)
Q Consensus 249 ~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~ 286 (417)
.. |.+...++ +.. .+.++.+.+.+++..+|.
T Consensus 139 ~~-----g~~~~~~~-~~g-~~~~~~~~v~~ll~~~G~ 169 (209)
T 2raf_A 139 VN-----GKEPTTVL-VAG-NDDSAKQRFTRALADSPL 169 (209)
T ss_dssp ET-----TTEECEEE-EEE-SCHHHHHHHHHHTTTSSC
T ss_pred cC-----CCCCceeE-EcC-CCHHHHHHHHHHHHHcCC
Confidence 11 11222322 222 256888999999999985
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.23 E-value=6.6e-11 Score=115.64 Aligned_cols=152 Identities=20% Similarity=0.153 Sum_probs=103.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecC--C--------CcCCHHhhcCcCCE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN--G--------TLGDIYETISGSDL 181 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~--~--------~~~s~~Ea~~~ADI 181 (417)
+||+|||+|+||.++|..|.++ |.+|.++.|.. .+..++.|+.... + .+.+.+ .+..+|+
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~------g~~V~~~~r~~---~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~-~~~~~D~ 72 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRS------GEDVHFLLRRD---YEAIAGNGLKVFSINGDFTLPHVKGYRAPE-EIGPMDL 72 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHT------SCCEEEECSTT---HHHHHHTCEEEEETTCCEEESCCCEESCHH-HHCCCSE
T ss_pred CEEEEECcCHHHHHHHHHHHHC------CCeEEEEEcCc---HHHHHhCCCEEEcCCCeEEEeeceeecCHH-HcCCCCE
Confidence 6899999999999999999999 99998887753 3555567764310 1 013444 4688999
Q ss_pred EEEccCCchHHHHHHHHHhcCCCCcEE-EEecCch-hhhhhhcccCCCCCccEEEec------cCCCchhHHHHHhhccc
Q 014834 182 VLLLISDAAQADNYEKIFSCMKPNSIL-GLSHGFL-LGHLQSIGLDFPKNIGVIAVC------PKGMGPSVRRLYVQGKE 253 (417)
Q Consensus 182 ViLavpd~~~~~Vl~eI~~~lk~gaiL-i~a~G~~-i~~~~~~~i~~~~dv~VI~v~------Pntpg~~vr~ly~~G~~ 253 (417)
||++||+....+++++|.++++++++| ++..|+. ...+.+ .+|++ +++..+ -.+|+.+. .
T Consensus 73 vilavk~~~~~~~l~~l~~~l~~~~~iv~l~nGi~~~~~l~~---~~~~~-~v~~~~~~~~a~~~~p~~v~-----~--- 140 (312)
T 3hn2_A 73 VLVGLKTFANSRYEELIRPLVEEGTQILTLQNGLGNEEALAT---LFGAE-RIIGGVAFLCSNRGEPGEVH-----H--- 140 (312)
T ss_dssp EEECCCGGGGGGHHHHHGGGCCTTCEEEECCSSSSHHHHHHH---HTCGG-GEEEEEEEEECCBCSSSEEE-----E---
T ss_pred EEEecCCCCcHHHHHHHHhhcCCCCEEEEecCCCCcHHHHHH---HCCCC-cEEEEEEEeeeEEcCCcEEE-----E---
Confidence 999999999999999999999998865 4778985 444543 34443 455433 23455541 1
Q ss_pred ccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 254 INGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 254 ~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~ 287 (417)
.|.|... ++.....+.+..+...+++...|..
T Consensus 141 -~~~g~~~-ig~~~~~~~~~~~~l~~~l~~~g~~ 172 (312)
T 3hn2_A 141 -LGAGRII-LGEFLPRDTGRIEELAAMFRQAGVD 172 (312)
T ss_dssp -CEEEEEE-EEESSCCCSHHHHHHHHHHHHTTCC
T ss_pred -CCCCeEE-EecCCCCccHHHHHHHHHHHhCCCC
Confidence 1344443 4433333345666777888888865
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.3e-11 Score=120.83 Aligned_cols=104 Identities=20% Similarity=0.255 Sum_probs=75.6
Q ss_pred hhhhcccccccc----cchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecC
Q 014834 91 EFIVRGGRDLFK----LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN 166 (417)
Q Consensus 91 e~~vr~g~~~f~----~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~ 166 (417)
+.-+|+|+|... .+ ..+.| |||||||+|+||.++|+.|+.. |++|+++++...+ ..++..
T Consensus 149 ~~~~~~g~W~~~~~~~~~-~~l~g-ktiGIIGlG~IG~~vA~~l~~~------G~~V~~~dr~~~~------~~~~~~-- 212 (340)
T 4dgs_A 149 DRLVREGRWAAGEQLPLG-HSPKG-KRIGVLGLGQIGRALASRAEAF------GMSVRYWNRSTLS------GVDWIA-- 212 (340)
T ss_dssp HHHHHTTCC------CCC-CCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECSSCCT------TSCCEE--
T ss_pred HHHHhcCCcccccCcCcc-ccccC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCccc------ccCcee--
Confidence 345688999753 23 78999 9999999999999999999988 9999877775432 234443
Q ss_pred CCcCCHHhhcCcCCEEEEccCCchH-HHHH-HHHHhcCCCCcEEEEec
Q 014834 167 GTLGDIYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH 212 (417)
Q Consensus 167 ~~~~s~~Ea~~~ADIViLavpd~~~-~~Vl-~eI~~~lk~gaiLi~a~ 212 (417)
..+++|++++||+|++++|.... ..++ +++++.||+|++|+.++
T Consensus 213 --~~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~a 258 (340)
T 4dgs_A 213 --HQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVA 258 (340)
T ss_dssp --CSSHHHHHHTCSEEEECC----------CHHHHHHTTTTCEEEECS
T ss_pred --cCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECC
Confidence 56899999999999999996655 4566 46888999999988655
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.4e-11 Score=122.22 Aligned_cols=107 Identities=21% Similarity=0.216 Sum_probs=85.4
Q ss_pred hhccccccccc-----------chhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcC
Q 014834 93 IVRGGRDLFKL-----------LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG 161 (417)
Q Consensus 93 ~vr~g~~~f~~-----------~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G 161 (417)
-+|+|+|.... ....+.| ++|||||+|+||.++|+.|+.. |++|+++++. ...+.+.+.|
T Consensus 132 ~~~~g~W~~~~~~~~~~~~~~~~~~~l~g-~tvGIIGlG~IG~~vA~~l~~~------G~~V~~~d~~--~~~~~~~~~g 202 (352)
T 3gg9_A 132 SLKHGAWQQSGLKSTTMPPNFGIGRVLKG-QTLGIFGYGKIGQLVAGYGRAF------GMNVLVWGRE--NSKERARADG 202 (352)
T ss_dssp HHHTTCTTCCCCCCTTSCTTTTSBCCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSH--HHHHHHHHTT
T ss_pred HHHcCCCCcccccccccccccccCccCCC-CEEEEEeECHHHHHHHHHHHhC------CCEEEEECCC--CCHHHHHhcC
Confidence 35778886531 2378999 9999999999999999999988 9999877664 2345667788
Q ss_pred ceecCCCcCCHHhhcCcCCEEEEccCCchH-HHHHH-HHHhcCCCCcEEEEec
Q 014834 162 FTEENGTLGDIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH 212 (417)
Q Consensus 162 ~~~~~~~~~s~~Ea~~~ADIViLavpd~~~-~~Vl~-eI~~~lk~gaiLi~a~ 212 (417)
+.. +.+++|++++||+|++++|.... ..++. +.++.||+|++|+.++
T Consensus 203 ~~~----~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a 251 (352)
T 3gg9_A 203 FAV----AESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTS 251 (352)
T ss_dssp CEE----CSSHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECS
T ss_pred ceE----eCCHHHHHhhCCEEEEeccCcHHHHHhhCHHHHhhCCCCcEEEECC
Confidence 874 55899999999999999997654 34553 6788999999999766
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.4e-11 Score=120.38 Aligned_cols=158 Identities=16% Similarity=0.079 Sum_probs=108.8
Q ss_pred hhhccccccccc-chhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcC
Q 014834 92 FIVRGGRDLFKL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170 (417)
Q Consensus 92 ~~vr~g~~~f~~-~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~ 170 (417)
.-+|+|+|.... ....+.| ++|||||+|+||.++|+.|+.. |++|+++++..++ +.+.+.|+. ..
T Consensus 146 ~~~~~g~W~~~~~~~~~l~g-~tvgIIGlG~IG~~vA~~l~~~------G~~V~~~d~~~~~--~~~~~~g~~-----~~ 211 (335)
T 2g76_A 146 ASMKDGKWERKKFMGTELNG-KTLGILGLGRIGREVATRMQSF------GMKTIGYDPIISP--EVSASFGVQ-----QL 211 (335)
T ss_dssp HHHHTTCCCTGGGCBCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECSSSCH--HHHHHTTCE-----EC
T ss_pred HHHHcCCCCccCCCCcCCCc-CEEEEEeECHHHHHHHHHHHHC------CCEEEEECCCcch--hhhhhcCce-----eC
Confidence 346788996432 2368999 9999999999999999999988 9999877765433 356677876 35
Q ss_pred CHHhhcCcCCEEEEccCCchH-HHHH-HHHHhcCCCCcEEEEecCchh-------hhhhhcccCCCCCccEEEeccCCCc
Q 014834 171 DIYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSHGFLL-------GHLQSIGLDFPKNIGVIAVCPKGMG 241 (417)
Q Consensus 171 s~~Ea~~~ADIViLavpd~~~-~~Vl-~eI~~~lk~gaiLi~a~G~~i-------~~~~~~~i~~~~dv~VI~v~Pntpg 241 (417)
+++|++++||+|++++|.... ..++ +++++.||+|++|+.++--.+ ..+.+ +..-...+||+..+|. +.
T Consensus 212 ~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~vvd~~aL~~aL~~-g~i~gA~lDV~~~EP~-~~ 289 (335)
T 2g76_A 212 PLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQS-GQCAGAALDVFTEEPP-RD 289 (335)
T ss_dssp CHHHHGGGCSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHH-TSEEEEEESCCSSSSC-SC
T ss_pred CHHHHHhcCCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECCCccccCHHHHHHHHHh-CCccEEEEeecCCCCC-CC
Confidence 899999999999999998764 4566 468889999999986654322 11211 1000113467777883 22
Q ss_pred hhHHHHHhhcccccCCCceEEEeecCC-CCHHHHHH
Q 014834 242 PSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNV 276 (417)
Q Consensus 242 ~~vr~ly~~G~~~~G~Gv~~liav~~d-vsgea~e~ 276 (417)
..+|.. -+.+++||.. .|.++.+.
T Consensus 290 ---~~L~~~--------~nvilTPH~~~~t~e~~~~ 314 (335)
T 2g76_A 290 ---RALVDH--------ENVISCPHLGASTKEAQSR 314 (335)
T ss_dssp ---CHHHHS--------TTEEECSSCTTCBHHHHHH
T ss_pred ---chHHhC--------CCEEECCcCCCCCHHHHHH
Confidence 234442 5688898863 44454443
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=5.9e-11 Score=110.34 Aligned_cols=149 Identities=18% Similarity=0.173 Sum_probs=100.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~~ 191 (417)
+||+|||+|+||.+++.+|.+. |++|++++|+.+ ..+...+.|+.. .+.+++++++|+||+++|+...
T Consensus 29 ~~I~iiG~G~~G~~la~~l~~~------g~~V~~~~r~~~-~~~~~~~~g~~~-----~~~~~~~~~~DvVi~av~~~~~ 96 (215)
T 2vns_A 29 PKVGILGSGDFARSLATRLVGS------GFKVVVGSRNPK-RTARLFPSAAQV-----TFQEEAVSSPEVIFVAVFREHY 96 (215)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCCEEEEESSHH-HHHHHSBTTSEE-----EEHHHHTTSCSEEEECSCGGGS
T ss_pred CEEEEEccCHHHHHHHHHHHHC------CCEEEEEeCCHH-HHHHHHHcCCce-----ecHHHHHhCCCEEEECCChHHH
Confidence 7899999999999999999998 999888777633 333343446663 3788899999999999998776
Q ss_pred HHHHHHHHhcCCCCcEEE-EecCchhhhh----------hhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCce
Q 014834 192 ADNYEKIFSCMKPNSILG-LSHGFLLGHL----------QSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (417)
Q Consensus 192 ~~Vl~eI~~~lk~gaiLi-~a~G~~i~~~----------~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~ 260 (417)
.++++ +.+.+ ++++|+ .+.|..+..+ .+ .+| +.+|++.+ |+..... ...|-. .|-+
T Consensus 97 ~~v~~-l~~~~-~~~~vv~~s~g~~~~~l~~~~~~~~~l~~---~l~-~~~vv~~~-n~~~~~~---~~~~~~---~g~~ 163 (215)
T 2vns_A 97 SSLCS-LSDQL-AGKILVDVSNPTEQEHLQHRESNAEYLAS---LFP-TCTVVKAF-NVISAWT---LQAGPR---DGNR 163 (215)
T ss_dssp GGGGG-GHHHH-TTCEEEECCCCCHHHHHHCSSCHHHHHHH---HCT-TSEEEEEC-TTBCHHH---HHTCSC---SSCC
T ss_pred HHHHH-HHHhc-CCCEEEEeCCCcccccccccccHHHHHHH---HCC-CCeEEecc-ccccHhH---hccccc---CCce
Confidence 66765 66666 788766 5667754322 12 234 45788877 4433221 111110 1222
Q ss_pred EEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 261 SSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 261 ~liav~~dvsgea~e~a~~L~~alG~~ 287 (417)
.++... .+.++.+.+..++..+|..
T Consensus 164 ~~~~~g--~~~~~~~~v~~ll~~~G~~ 188 (215)
T 2vns_A 164 QVPICG--DQPEAKRAVSEMALAMGFM 188 (215)
T ss_dssp EEEEEE--SCHHHHHHHHHHHHHTTCE
T ss_pred eEEEec--CCHHHHHHHHHHHHHcCCc
Confidence 222223 2578899999999999964
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=6.2e-10 Score=114.02 Aligned_cols=200 Identities=12% Similarity=0.102 Sum_probs=119.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH-------------------cC-ceecCCCcCC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------------------AG-FTEENGTLGD 171 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~-------------------~G-~~~~~~~~~s 171 (417)
+||+|||+|.||.++|..|.+. |++|++.+++.++ .+...+ .| +.. ..+
T Consensus 1 mkI~VIG~G~vG~~~A~~la~~------G~~V~~~d~~~~~-~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~----t~~ 69 (436)
T 1mv8_A 1 MRISIFGLGYVGAVCAGCLSAR------GHEVIGVDVSSTK-IDLINQGKSPIVEPGLEALLQQGRQTGRLSG----TTD 69 (436)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT------TCEEEEECSCHHH-HHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE----ESC
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCEEEEEECCHHH-HHHHhCCCCCcCCCCHHHHHHhhcccCceEE----eCC
Confidence 5899999999999999999999 9998877665333 333332 23 332 457
Q ss_pred HHhhcCcCCEEEEccCCch----------HHHHHHHHHhcCCC---CcEEEEecCchhhh----h----hhc-ccCCCCC
Q 014834 172 IYETISGSDLVLLLISDAA----------QADNYEKIFSCMKP---NSILGLSHGFLLGH----L----QSI-GLDFPKN 229 (417)
Q Consensus 172 ~~Ea~~~ADIViLavpd~~----------~~~Vl~eI~~~lk~---gaiLi~a~G~~i~~----~----~~~-~i~~~~d 229 (417)
+++++++||+||+++|... ..+++++|.+++++ +++|++.+++.... + ... +.....+
T Consensus 70 ~~~~~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~~~g~~~~~~ 149 (436)
T 1mv8_A 70 FKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVD 149 (436)
T ss_dssp HHHHHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTT
T ss_pred HHHHhccCCEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHHhcCcccCCc
Confidence 8888999999999998655 67888899999999 89888765543221 1 110 1111122
Q ss_pred ccEEEeccCC--CchhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccch
Q 014834 230 IGVIAVCPKG--MGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERG 307 (417)
Q Consensus 230 v~VI~v~Pnt--pg~~vr~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t 307 (417)
.. +...|.. |+..+.+.+... ..++. .+ ++++.+.+..++..+|.. ++.+.... .+...+.+.+
T Consensus 150 ~~-v~~~Pe~~~~G~~~~~~~~~~--------~iv~G--~~-~~~~~~~~~~l~~~~~~~-v~~~~~~~-ae~~Kl~~N~ 215 (436)
T 1mv8_A 150 FG-VGTNPEFLRESTAIKDYDFPP--------MTVIG--EL-DKQTGDLLEEIYRELDAP-IIRKTVEV-AEMIKYTCNV 215 (436)
T ss_dssp BE-EEECCCCCCTTSHHHHHHSCS--------CEEEE--ES-SHHHHHHHHHHHTTSSSC-EEEEEHHH-HHHHHHHHHH
T ss_pred EE-EEECcccccccccchhccCCC--------EEEEE--cC-CHHHHHHHHHHHhccCCC-EEcCCHHH-HHHHHHHHHH
Confidence 23 3445543 333332222211 12222 22 578889999999999864 22232111 0100111111
Q ss_pred hhhchHHHHHHHHHHHHHHcCCCHHHHHHH
Q 014834 308 ILLGAVHGIVESLFRRFTENGMSEDLAYKN 337 (417)
Q Consensus 308 ~L~G~~pA~iea~~d~~v~~Gl~~e~A~~~ 337 (417)
.....-+++..+...+.+.|+++++....
T Consensus 216 -~~a~~ia~~nE~~~l~~~~Gid~~~v~~~ 244 (436)
T 1mv8_A 216 -WHAAKVTFANEIGNIAKAVGVDGREVMDV 244 (436)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 11112245666777888999998766553
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=2.1e-11 Score=121.47 Aligned_cols=108 Identities=19% Similarity=0.283 Sum_probs=84.3
Q ss_pred hhhcccccc-cc--cchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCC
Q 014834 92 FIVRGGRDL-FK--LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT 168 (417)
Q Consensus 92 ~~vr~g~~~-f~--~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~ 168 (417)
.-+|+|+|. +. .....+.| ++|||||+|+||.++|+.|+.. |++|+++++.. ...+.+.+.|+.
T Consensus 124 ~~~~~g~w~~~~~~~~~~~l~g-~tvGIIG~G~IG~~vA~~l~~~------G~~V~~~d~~~-~~~~~~~~~g~~----- 190 (330)
T 4e5n_A 124 AFVRSGKFRGWQPRFYGTGLDN-ATVGFLGMGAIGLAMADRLQGW------GATLQYHEAKA-LDTQTEQRLGLR----- 190 (330)
T ss_dssp HHHHTTCCCSCCSCCCCCCSTT-CEEEEECCSHHHHHHHHHTTTS------CCEEEEECSSC-CCHHHHHHHTEE-----
T ss_pred HHHHhCCccccCccccCCccCC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEECCCC-CcHhHHHhcCce-----
Confidence 346788886 22 12367999 9999999999999999999988 99988777653 234556667876
Q ss_pred cCCHHhhcCcCCEEEEccCCchH-HHHH-HHHHhcCCCCcEEEEec
Q 014834 169 LGDIYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH 212 (417)
Q Consensus 169 ~~s~~Ea~~~ADIViLavpd~~~-~~Vl-~eI~~~lk~gaiLi~a~ 212 (417)
..+++|++++||+|++++|.... ..++ .+.++.||+|++|+.++
T Consensus 191 ~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~a 236 (330)
T 4e5n_A 191 QVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPC 236 (330)
T ss_dssp ECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECS
T ss_pred eCCHHHHHhhCCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEECC
Confidence 35899999999999999996544 3455 46889999999998665
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=99.17 E-value=3.7e-11 Score=120.85 Aligned_cols=109 Identities=15% Similarity=0.146 Sum_probs=86.2
Q ss_pred hhhccccccccc---chhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCC
Q 014834 92 FIVRGGRDLFKL---LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT 168 (417)
Q Consensus 92 ~~vr~g~~~f~~---~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~ 168 (417)
.-+|+|+|.... ....+.| ++|||||+|+||.++|+.|+.. |++|+++++.. ...+.+.+.|+..
T Consensus 143 ~~~~~g~W~~~~~~~~~~~l~g-ktvGIIG~G~IG~~vA~~l~~~------G~~V~~~dr~~-~~~~~~~~~g~~~---- 210 (351)
T 3jtm_A 143 NQVVKGEWNVAGIAYRAYDLEG-KTIGTVGAGRIGKLLLQRLKPF------GCNLLYHDRLQ-MAPELEKETGAKF---- 210 (351)
T ss_dssp HHHHTTCCCHHHHHTTCCCSTT-CEEEEECCSHHHHHHHHHHGGG------CCEEEEECSSC-CCHHHHHHHCCEE----
T ss_pred HHHHcCCCccccccCCcccccC-CEEeEEEeCHHHHHHHHHHHHC------CCEEEEeCCCc-cCHHHHHhCCCeE----
Confidence 346789997532 2367999 9999999999999999999988 99988777653 3355666778874
Q ss_pred cCCHHhhcCcCCEEEEccCCchH-HHHH-HHHHhcCCCCcEEEEec
Q 014834 169 LGDIYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH 212 (417)
Q Consensus 169 ~~s~~Ea~~~ADIViLavpd~~~-~~Vl-~eI~~~lk~gaiLi~a~ 212 (417)
+.+++|++++||+|++++|.... ..++ .+.++.||+|++|+.++
T Consensus 211 ~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a 256 (351)
T 3jtm_A 211 VEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNA 256 (351)
T ss_dssp CSCHHHHGGGCSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECS
T ss_pred cCCHHHHHhcCCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECc
Confidence 56899999999999999996543 4455 46788899999999665
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.7e-11 Score=118.91 Aligned_cols=102 Identities=15% Similarity=0.145 Sum_probs=81.6
Q ss_pred hhcccccccccchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCH
Q 014834 93 IVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172 (417)
Q Consensus 93 ~vr~g~~~f~~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~ 172 (417)
-+|+|+|.+... ..+.| +||||||+|+||.++|+.|+.. |++|+++++...+. ..+.. ..++
T Consensus 106 ~~~~g~w~~~~~-~~l~g-~tvGIIGlG~IG~~vA~~l~~~------G~~V~~~dr~~~~~------~~~~~----~~~l 167 (290)
T 3gvx_A 106 LMKAGIFRQSPT-TLLYG-KALGILGYGGIGRRVAHLAKAF------GMRVIAYTRSSVDQ------NVDVI----SESP 167 (290)
T ss_dssp HHHTTCCCCCCC-CCCTT-CEEEEECCSHHHHHHHHHHHHH------TCEEEEECSSCCCT------TCSEE----CSSH
T ss_pred HhhhcccccCCc-eeeec-chheeeccCchhHHHHHHHHhh------CcEEEEEecccccc------ccccc----cCCh
Confidence 367889987654 78999 9999999999999999999998 99998877754321 11332 4589
Q ss_pred HhhcCcCCEEEEccCCchH-HHHH-HHHHhcCCCCcEEEEec
Q 014834 173 YETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH 212 (417)
Q Consensus 173 ~Ea~~~ADIViLavpd~~~-~~Vl-~eI~~~lk~gaiLi~a~ 212 (417)
+|++++||+|++++|.... ..++ .+.++.||+|++|+.++
T Consensus 168 ~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~a 209 (290)
T 3gvx_A 168 ADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVA 209 (290)
T ss_dssp HHHHHHCSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECS
T ss_pred HHHhhccCeEEEEeeccccchhhhhHHHHhhhhcCceEEEee
Confidence 9999999999999997554 4455 46889999999999766
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.1e-09 Score=119.47 Aligned_cols=208 Identities=11% Similarity=0.065 Sum_probs=128.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH-----------cCceec-------C--CCcC
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEE-------N--GTLG 170 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~-----------~G~~~~-------~--~~~~ 170 (417)
|+||+|||+|.||.+||.+|.+. |++|++++++.+. .+.+.+ .|.... + ....
T Consensus 312 ~~kV~VIGaG~MG~~iA~~la~a------G~~V~l~D~~~~~-~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~ 384 (725)
T 2wtb_A 312 IKKVAIIGGGLMGSGIATALILS------NYPVILKEVNEKF-LEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSL 384 (725)
T ss_dssp CCCEEEECCSHHHHHHHHHHHTT------TCCEEEECSSHHH-HHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEES
T ss_pred CcEEEEEcCCHhhHHHHHHHHhC------CCEEEEEECCHHH-HHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeC
Confidence 58999999999999999999999 9999888776432 222211 231100 0 0123
Q ss_pred CHHhhcCcCCEEEEccCCchH--HHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHH
Q 014834 171 DIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRL 247 (417)
Q Consensus 171 s~~Ea~~~ADIViLavpd~~~--~~Vl~eI~~~lk~gaiLi-~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~l 247 (417)
++ +++++||+||+++|+... .+++.++.++++++++|+ .++++.+..+.+ .....-+++..|+--|...
T Consensus 385 d~-~~~~~aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntStl~i~~la~---~~~~p~~~iG~hf~~P~~~---- 456 (725)
T 2wtb_A 385 DY-ESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTIDLNKIGE---RTKSQDRIVGAHFFSPAHI---- 456 (725)
T ss_dssp SS-GGGTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTT---TCSCTTTEEEEEECSSTTT----
T ss_pred CH-HHHCCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHH---HhcCCCCEEEecCCCCccc----
Confidence 55 678999999999998764 468889999999999875 567777765543 2222236888888666543
Q ss_pred HhhcccccCCCce-EEEeecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhc-hHHHHHHHHHHHHH
Q 014834 248 YVQGKEINGAGIN-SSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLG-AVHGIVESLFRRFT 325 (417)
Q Consensus 248 y~~G~~~~G~Gv~-~liav~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G-~~pA~iea~~d~~v 325 (417)
++ .-+......+.+..+.+..++..+|... +... +. ..-+++ .+.+++..+.. ++
T Consensus 457 -----------~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~-v~v~---d~-------~Gfi~Nril~~~~~Ea~~-l~ 513 (725)
T 2wtb_A 457 -----------MPLLEIVRTNHTSAQVIVDLLDVGKKIKKTP-VVVG---NC-------TGFAVNRMFFPYTQAAMF-LV 513 (725)
T ss_dssp -----------CCEEEEEECSSCCHHHHHHHHHHHHHTTCEE-EEEE---SS-------TTTTHHHHHHHHHHHHHH-HH
T ss_pred -----------CceEEEEECCCCCHHHHHHHHHHHHHhCCEE-EEEC---CC-------ccHHHHHHHHHHHHHHHH-HH
Confidence 22 2244466678899999999999999642 2110 11 111223 22233333333 44
Q ss_pred HcCCCHHHHHHHHHHHHH--HHHHHHHHHhcHHH
Q 014834 326 ENGMSEDLAYKNTVECIT--GIISKIISTQGMLA 357 (417)
Q Consensus 326 ~~Gl~~e~A~~~~~q~~~--~g~~~li~e~G~~~ 357 (417)
+.|+++++..... ...- -|--.++-..|++.
T Consensus 514 ~~G~~~e~id~~~-~~~g~p~Gp~~l~D~vGld~ 546 (725)
T 2wtb_A 514 ECGADPYLIDRAI-SKFGMPMGPFRLCDLVGFGV 546 (725)
T ss_dssp HTTCCHHHHHHHH-HHHTCSSCHHHHHHHHCHHH
T ss_pred HCCCCHHHHHHHH-HHcCCCCCHHHHHHHhchHH
Confidence 5599998776654 2210 12334455556533
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.16 E-value=5.3e-11 Score=120.38 Aligned_cols=107 Identities=17% Similarity=0.260 Sum_probs=83.5
Q ss_pred hhhccccccccc----chhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCC
Q 014834 92 FIVRGGRDLFKL----LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG 167 (417)
Q Consensus 92 ~~vr~g~~~f~~----~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~ 167 (417)
.-+|+|+|.|.. ....+.| ++|||||+|+||.++|+.|+.. |++|+++++.. ..+.+.+.|+.
T Consensus 154 ~~~r~g~~~w~~~~~~~~~~l~g-ktvGIIGlG~IG~~vA~~l~~f------G~~V~~~d~~~--~~~~~~~~g~~---- 220 (365)
T 4hy3_A 154 IAFQEGTELWGGEGNASARLIAG-SEIGIVGFGDLGKALRRVLSGF------RARIRVFDPWL--PRSMLEENGVE---- 220 (365)
T ss_dssp HHHHHTCCCCSSSSTTSCCCSSS-SEEEEECCSHHHHHHHHHHTTS------CCEEEEECSSS--CHHHHHHTTCE----
T ss_pred HHHHcCCccccccccccccccCC-CEEEEecCCcccHHHHHhhhhC------CCEEEEECCCC--CHHHHhhcCee----
Confidence 346778854321 2478999 9999999999999999999988 99998777653 34556677876
Q ss_pred CcCCHHhhcCcCCEEEEccCCchH-HHHH-HHHHhcCCCCcEEEEec
Q 014834 168 TLGDIYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH 212 (417)
Q Consensus 168 ~~~s~~Ea~~~ADIViLavpd~~~-~~Vl-~eI~~~lk~gaiLi~a~ 212 (417)
..+++|++++||+|++++|.... ..++ .+.++.||+|++|+.++
T Consensus 221 -~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~a 266 (365)
T 4hy3_A 221 -PASLEDVLTKSDFIFVVAAVTSENKRFLGAEAFSSMRRGAAFILLS 266 (365)
T ss_dssp -ECCHHHHHHSCSEEEECSCSSCC---CCCHHHHHTSCTTCEEEECS
T ss_pred -eCCHHHHHhcCCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEEEECc
Confidence 35899999999999999997654 4555 46888999999999665
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=3.4e-11 Score=120.84 Aligned_cols=107 Identities=20% Similarity=0.188 Sum_probs=82.9
Q ss_pred hhccccccccc--------chhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCcee
Q 014834 93 IVRGGRDLFKL--------LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (417)
Q Consensus 93 ~vr~g~~~f~~--------~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~ 164 (417)
-+|+|+|.... +...+.| ++|||||+|+||.++|+.|+.. |++|+++++...+ ..+.+.|+..
T Consensus 143 ~~~~g~w~~~~~~~~~~~~~~~~l~g-~tvGIIG~G~IG~~vA~~l~~~------G~~V~~~d~~~~~--~~~~~~g~~~ 213 (347)
T 1mx3_A 143 ALREGTRVQSVEQIREVASGAARIRG-ETLGIIGLGRVGQAVALRAKAF------GFNVLFYDPYLSD--GVERALGLQR 213 (347)
T ss_dssp HHHTTCCCCSHHHHHHHTTTCCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECTTSCT--THHHHHTCEE
T ss_pred HHHcCCcccccccccccccCccCCCC-CEEEEEeECHHHHHHHHHHHHC------CCEEEEECCCcch--hhHhhcCCee
Confidence 45778884321 1257899 9999999999999999999988 9999887765433 2345567764
Q ss_pred cCCCcCCHHhhcCcCCEEEEccCCchH-HHHH-HHHHhcCCCCcEEEEec
Q 014834 165 ENGTLGDIYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH 212 (417)
Q Consensus 165 ~~~~~~s~~Ea~~~ADIViLavpd~~~-~~Vl-~eI~~~lk~gaiLi~a~ 212 (417)
+.+++|++++||+|++++|+... ..++ ++.++.||+|++|+.++
T Consensus 214 ----~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~a 259 (347)
T 1mx3_A 214 ----VSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTA 259 (347)
T ss_dssp ----CSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECS
T ss_pred ----cCCHHHHHhcCCEEEEcCCCCHHHHHHhHHHHHhcCCCCCEEEECC
Confidence 45899999999999999998654 4566 46788999999988555
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=3.9e-11 Score=118.16 Aligned_cols=104 Identities=11% Similarity=0.076 Sum_probs=81.4
Q ss_pred hhhcccccccccchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCC
Q 014834 92 FIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (417)
Q Consensus 92 ~~vr~g~~~f~~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s 171 (417)
.-+|+|+|........+.| ++|||||+|+||.++|+.|+.. |++|+++++... + .+... ..+
T Consensus 106 ~~~~~g~w~~~~~~~~l~g-~~vgIIG~G~IG~~~A~~l~~~------G~~V~~~dr~~~---~----~~~~~----~~~ 167 (303)
T 1qp8_A 106 EKMKRGDYGRDVEIPLIQG-EKVAVLGLGEIGTRVGKILAAL------GAQVRGFSRTPK---E----GPWRF----TNS 167 (303)
T ss_dssp HHHHTTCCCCCSCCCCCTT-CEEEEESCSTHHHHHHHHHHHT------TCEEEEECSSCC---C----SSSCC----BSC
T ss_pred HHHHcCCCCCCCCCCCCCC-CEEEEEccCHHHHHHHHHHHHC------CCEEEEECCCcc---c----cCccc----CCC
Confidence 3467889964323357999 9999999999999999999988 999987776533 1 13332 457
Q ss_pred HHhhcCcCCEEEEccCCchH-HHHHH-HHHhcCCCCcEEEEecC
Q 014834 172 IYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSHG 213 (417)
Q Consensus 172 ~~Ea~~~ADIViLavpd~~~-~~Vl~-eI~~~lk~gaiLi~a~G 213 (417)
+++++++||+|++++|.... ..++. ++++.||+|++|+.++-
T Consensus 168 l~ell~~aDvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~sr 211 (303)
T 1qp8_A 168 LEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGR 211 (303)
T ss_dssp SHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSC
T ss_pred HHHHHhhCCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEECCC
Confidence 89999999999999998754 55664 68899999999996664
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.15 E-value=6e-11 Score=119.11 Aligned_cols=107 Identities=18% Similarity=0.187 Sum_probs=82.4
Q ss_pred hhhcccccccc----cchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCC
Q 014834 92 FIVRGGRDLFK----LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG 167 (417)
Q Consensus 92 ~~vr~g~~~f~----~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~ 167 (417)
.-+|+|+|... .....+.| ++|||||+|+||.++|+.|+.. |++|+++++...+ .+.+ .|+..
T Consensus 151 ~~~r~g~W~~~~~~~~~g~~l~g-ktvGIIGlG~IG~~vA~~l~~~------G~~V~~~dr~~~~-~~~~--~g~~~--- 217 (345)
T 4g2n_A 151 RMVRSGSWPGWGPTQLLGMGLTG-RRLGIFGMGRIGRAIATRARGF------GLAIHYHNRTRLS-HALE--EGAIY--- 217 (345)
T ss_dssp HHHHTTCCCCCCTTTTCBCCCTT-CEEEEESCSHHHHHHHHHHHTT------TCEEEEECSSCCC-HHHH--TTCEE---
T ss_pred HHHHcCCCcccCcccccccccCC-CEEEEEEeChhHHHHHHHHHHC------CCEEEEECCCCcc-hhhh--cCCeE---
Confidence 34688999631 12378999 9999999999999999999988 9999877765322 2222 26663
Q ss_pred CcCCHHhhcCcCCEEEEccCCchH-HHHH-HHHHhcCCCCcEEEEec
Q 014834 168 TLGDIYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH 212 (417)
Q Consensus 168 ~~~s~~Ea~~~ADIViLavpd~~~-~~Vl-~eI~~~lk~gaiLi~a~ 212 (417)
+.+++|++++||+|++++|.... ..++ .+.++.||+|++|+.++
T Consensus 218 -~~~l~ell~~sDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~a 263 (345)
T 4g2n_A 218 -HDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINIS 263 (345)
T ss_dssp -CSSHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEEECS
T ss_pred -eCCHHHHHhhCCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEEECC
Confidence 45899999999999999996554 4455 46788899999999665
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=99.14 E-value=6.5e-11 Score=120.81 Aligned_cols=109 Identities=13% Similarity=0.043 Sum_probs=85.0
Q ss_pred hhhccccccccc---chhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCC
Q 014834 92 FIVRGGRDLFKL---LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT 168 (417)
Q Consensus 92 ~~vr~g~~~f~~---~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~ 168 (417)
..+|+|+|.... ....+.| ++|||||+|+||.++|+.|+.. |++|+++++... ..+.+.+.|+..
T Consensus 170 ~~~~~g~W~~~~~~~~~~~l~g-ktvGIIGlG~IG~~vA~~l~a~------G~~V~~~d~~~~-~~~~~~~~G~~~---- 237 (393)
T 2nac_A 170 EWARKGGWNIADCVSHAYDLEA-MHVGTVAAGRIGLAVLRRLAPF------DVHLHYTDRHRL-PESVEKELNLTW---- 237 (393)
T ss_dssp HHHHTTCCCHHHHHTTCCCCTT-CEEEEECCSHHHHHHHHHHGGG------TCEEEEECSSCC-CHHHHHHHTCEE----
T ss_pred HHHHcCCCCccccccCCccCCC-CEEEEEeECHHHHHHHHHHHhC------CCEEEEEcCCcc-chhhHhhcCcee----
Confidence 356789996421 1257999 9999999999999999999988 999987776532 345566678764
Q ss_pred cCCHHhhcCcCCEEEEccCCchH-HHHH-HHHHhcCCCCcEEEEec
Q 014834 169 LGDIYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH 212 (417)
Q Consensus 169 ~~s~~Ea~~~ADIViLavpd~~~-~~Vl-~eI~~~lk~gaiLi~a~ 212 (417)
..+++|++++||+|++++|.... ..++ ++.++.||+|++|+.++
T Consensus 238 ~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a 283 (393)
T 2nac_A 238 HATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTA 283 (393)
T ss_dssp CSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECS
T ss_pred cCCHHHHHhcCCEEEEecCCchHHHHHhhHHHHhhCCCCCEEEECC
Confidence 45799999999999999997543 4566 46788999999988554
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=4.5e-11 Score=118.92 Aligned_cols=107 Identities=22% Similarity=0.256 Sum_probs=83.3
Q ss_pred hhhcccccc-----cc---cchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCce
Q 014834 92 FIVRGGRDL-----FK---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (417)
Q Consensus 92 ~~vr~g~~~-----f~---~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~ 163 (417)
.-+|+|+|. +. .....+.| ++|||||+|.||.++|+.|+.. |++|+++++...+ +.+.+.|+.
T Consensus 124 ~~~~~~~w~~~~~~~~~~~~~~~~l~g-~~vgIIG~G~iG~~iA~~l~~~------G~~V~~~d~~~~~--~~~~~~g~~ 194 (334)
T 2dbq_A 124 RFVRSGEWKKRGVAWHPKWFLGYDVYG-KTIGIIGLGRIGQAIAKRAKGF------NMRILYYSRTRKE--EVERELNAE 194 (334)
T ss_dssp HHHHTSHHHHTTCCCCTTTTCCCCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCH--HHHHHHCCE
T ss_pred HHHHcCCCcccccccccccccccCCCC-CEEEEEccCHHHHHHHHHHHhC------CCEEEEECCCcch--hhHhhcCcc
Confidence 346778885 21 11267899 9999999999999999999988 9999887776443 455566776
Q ss_pred ecCCCcCCHHhhcCcCCEEEEccCCchH-HHHH-HHHHhcCCCCcEEEEec
Q 014834 164 EENGTLGDIYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH 212 (417)
Q Consensus 164 ~~~~~~~s~~Ea~~~ADIViLavpd~~~-~~Vl-~eI~~~lk~gaiLi~a~ 212 (417)
..++++++++||+|++++|+... ..++ +++.+.|++|++|+.++
T Consensus 195 -----~~~l~~~l~~aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailIn~s 240 (334)
T 2dbq_A 195 -----FKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIA 240 (334)
T ss_dssp -----ECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECS
T ss_pred -----cCCHHHHHhhCCEEEECCCCChHHHHhhCHHHHhcCCCCcEEEECC
Confidence 35889999999999999998774 4566 46788899999888554
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=99.13 E-value=6.2e-11 Score=119.56 Aligned_cols=109 Identities=15% Similarity=0.035 Sum_probs=85.1
Q ss_pred hhhcccccccc---cchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcE-EEEEecCChhhHHHHHHcCceecCC
Q 014834 92 FIVRGGRDLFK---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENG 167 (417)
Q Consensus 92 ~~vr~g~~~f~---~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~-ViVg~r~~s~s~~~A~~~G~~~~~~ 167 (417)
.-+|+|+|.+. .....+.| ++|||||+|+||.++|+.|+.. |++ |+++++... ..+.+.+.|+..
T Consensus 143 ~~~~~g~W~~~~~~~~~~~l~g-~tvgIIG~G~IG~~vA~~l~~~------G~~~V~~~d~~~~-~~~~~~~~g~~~--- 211 (364)
T 2j6i_A 143 EQIINHDWEVAAIAKDAYDIEG-KTIATIGAGRIGYRVLERLVPF------NPKELLYYDYQAL-PKDAEEKVGARR--- 211 (364)
T ss_dssp HHHHTTCCCHHHHHTTCCCSTT-CEEEEECCSHHHHHHHHHHGGG------CCSEEEEECSSCC-CHHHHHHTTEEE---
T ss_pred HHHHhCCCCcCcccCCcccCCC-CEEEEECcCHHHHHHHHHHHhC------CCcEEEEECCCcc-chhHHHhcCcEe---
Confidence 35678899742 12368999 9999999999999999999988 996 887776532 345566778764
Q ss_pred CcCCHHhhcCcCCEEEEccCCchH-HHHHH-HHHhcCCCCcEEEEec
Q 014834 168 TLGDIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH 212 (417)
Q Consensus 168 ~~~s~~Ea~~~ADIViLavpd~~~-~~Vl~-eI~~~lk~gaiLi~a~ 212 (417)
+.++++++++||+|++++|.... ..++. +.++.||+|++|+.++
T Consensus 212 -~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~a 257 (364)
T 2j6i_A 212 -VENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTA 257 (364)
T ss_dssp -CSSHHHHHHTCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECS
T ss_pred -cCCHHHHHhcCCEEEECCCCChHHHHHhCHHHHhhCCCCCEEEECC
Confidence 45899999999999999998754 45563 5788999999888554
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.1e-09 Score=113.33 Aligned_cols=202 Identities=12% Similarity=0.114 Sum_probs=121.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH-------------------cC-ceecCCCcCC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------------------AG-FTEENGTLGD 171 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~-------------------~G-~~~~~~~~~s 171 (417)
+||+|||+|.||.++|.+|.+. |++|++++++.++ .+...+ .| +.. +.+
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~------G~~V~~~D~~~~~-v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~----t~d 71 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAEL------GANVRCIDTDRNK-IEQLNSGTIPIYEPGLEKMIARNVKAGRLRF----GTE 71 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHHH-HHHHHHTCSCCCSTTHHHHHHHHHHTTSEEE----ESC
T ss_pred CEEEEECcCHHHHHHHHHHHhc------CCEEEEEECCHHH-HHHHHcCCCcccCCCHHHHHHhhcccCcEEE----ECC
Confidence 6999999999999999999999 9999877765433 333222 11 222 467
Q ss_pred HHhhcCcCCEEEEccCCc----------hHHHHHHHHHhcCCCCcEEEEecCchhh---h----hhhcccCCC--CCccE
Q 014834 172 IYETISGSDLVLLLISDA----------AQADNYEKIFSCMKPNSILGLSHGFLLG---H----LQSIGLDFP--KNIGV 232 (417)
Q Consensus 172 ~~Ea~~~ADIViLavpd~----------~~~~Vl~eI~~~lk~gaiLi~a~G~~i~---~----~~~~~i~~~--~dv~V 232 (417)
+++++++||+||+++|.. ...+++++|.+++++|++|++.+.+... . +.+...... .++ .
T Consensus 72 ~~ea~~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~~~~~~~~~~d~-~ 150 (450)
T 3gg2_A 72 IEQAVPEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQEELDKREVLIDF-D 150 (450)
T ss_dssp HHHHGGGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHHHHTTCCCCE-E
T ss_pred HHHHHhcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHHhccccCcCcce-e
Confidence 889999999999999977 6778999999999999999888765322 1 111000111 222 3
Q ss_pred EEeccCCC--chhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC--ceeccchhhhhhhhccccchh
Q 014834 233 IAVCPKGM--GPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP--FTFATTLEQEYKSDIFGERGI 308 (417)
Q Consensus 233 I~v~Pntp--g~~vr~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~--~~iettf~~e~~~dl~ge~t~ 308 (417)
+...|... +..+++... .+.++ +.. .+.++.+.+..++..++.. .++.+.. ...+.-.+.+.+
T Consensus 151 v~~~Pe~a~eG~~~~~~~~---------p~~iv-vG~-~~~~~~~~~~~l~~~~~~~~~~~~~~d~-~~aE~~Kl~~N~- 217 (450)
T 3gg2_A 151 IASNPEFLKEGNAIDDFMK---------PDRVV-VGV-DSDRARELITSLYKPMLLNNFRVLFMDI-ASAEMTKYAANA- 217 (450)
T ss_dssp EEECCCCCCTTSHHHHHHS---------CSCEE-EEE-SSHHHHHHHHHHHTTTCCSCCCEEEECH-HHHHHHHHHHHH-
T ss_pred EEechhhhcccchhhhccC---------CCEEE-EEc-CCHHHHHHHHHHHHHHhcCCCeEEecCH-HHHHHHHHHHHH-
Confidence 44556432 222211111 11212 122 1468889999999998862 1222221 111111122221
Q ss_pred hhchHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 014834 309 LLGAVHGIVESLFRRFTENGMSEDLAYKNT 338 (417)
Q Consensus 309 L~G~~pA~iea~~d~~v~~Gl~~e~A~~~~ 338 (417)
+....-+++.-+...+.+.|+++++.+..+
T Consensus 218 ~~a~~ia~~nE~~~l~~~~Gid~~~v~~~~ 247 (450)
T 3gg2_A 218 MLATRISFMNDVANLCERVGADVSMVRLGI 247 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 112222345556667788899888776643
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=4.6e-11 Score=119.27 Aligned_cols=107 Identities=23% Similarity=0.323 Sum_probs=82.2
Q ss_pred hhhhccccccccc--chhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCC
Q 014834 91 EFIVRGGRDLFKL--LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT 168 (417)
Q Consensus 91 e~~vr~g~~~f~~--~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~ 168 (417)
+.-+|.|+|.... ....+.| ++|||||+|+||.++|+.|+.. |++|+++++...+. .|+..
T Consensus 143 ~~~~~~g~w~~~~~~~~~~l~g-~~vgIIG~G~iG~~vA~~l~~~------G~~V~~~dr~~~~~------~g~~~---- 205 (333)
T 3ba1_A 143 DKYVRRGAWKFGDFKLTTKFSG-KRVGIIGLGRIGLAVAERAEAF------DCPISYFSRSKKPN------TNYTY---- 205 (333)
T ss_dssp HHHHHTTGGGGCCCCCCCCCTT-CCEEEECCSHHHHHHHHHHHTT------TCCEEEECSSCCTT------CCSEE----
T ss_pred HHHHHcCCCCccccccccccCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCCchhc------cCcee----
Confidence 3456889996421 1268999 9999999999999999999988 99998877754321 25553
Q ss_pred cCCHHhhcCcCCEEEEccCCch-HHHHH-HHHHhcCCCCcEEEEec-Cc
Q 014834 169 LGDIYETISGSDLVLLLISDAA-QADNY-EKIFSCMKPNSILGLSH-GF 214 (417)
Q Consensus 169 ~~s~~Ea~~~ADIViLavpd~~-~~~Vl-~eI~~~lk~gaiLi~a~-G~ 214 (417)
..++++++++||+|++++|+.. ...++ +++.+.|++|++|+.++ |.
T Consensus 206 ~~~l~ell~~aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~srG~ 254 (333)
T 3ba1_A 206 YGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGP 254 (333)
T ss_dssp ESCHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCGG
T ss_pred cCCHHHHHhcCCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECCCCc
Confidence 4689999999999999999865 45666 45777899999888554 43
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.12 E-value=5.6e-11 Score=117.39 Aligned_cols=154 Identities=20% Similarity=0.166 Sum_probs=102.0
Q ss_pred hhhcccccc-cc---cchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCC
Q 014834 92 FIVRGGRDL-FK---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG 167 (417)
Q Consensus 92 ~~vr~g~~~-f~---~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~ 167 (417)
.-+|+|+|. +. .....+.| ++|||||+|+||.++|+.|+.. |++|+++++...+.. +.
T Consensus 122 ~~~~~g~w~~~~~~~~~~~~l~g-~~vgIIG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~~~-------~~---- 183 (311)
T 2cuk_A 122 AYARDGLWKAWHPELLLGLDLQG-LTLGLVGMGRIGQAVAKRALAF------GMRVVYHARTPKPLP-------YP---- 183 (311)
T ss_dssp HHHHTTCCCCCCTTTTCBCCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCSSS-------SC----
T ss_pred HHHHcCCCCccccccccCcCCCC-CEEEEEEECHHHHHHHHHHHHC------CCEEEEECCCCcccc-------cc----
Confidence 346788895 21 12368999 9999999999999999999988 999987776543321 22
Q ss_pred CcCCHHhhcCcCCEEEEccCCchH-HHHHH-HHHhcCCCCcEEEEecCchhh---hhhhcccC--C-CCCccEEEeccCC
Q 014834 168 TLGDIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSHGFLLG---HLQSIGLD--F-PKNIGVIAVCPKG 239 (417)
Q Consensus 168 ~~~s~~Ea~~~ADIViLavpd~~~-~~Vl~-eI~~~lk~gaiLi~a~G~~i~---~~~~~~i~--~-~~dv~VI~v~Pnt 239 (417)
..++++++++||+|++++|+... ..++. +..+.||+|++|+.++--.+. .+.+ .+. + ...+||+..+|..
T Consensus 184 -~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~-aL~g~i~ga~lDv~~~eP~~ 261 (311)
T 2cuk_A 184 -FLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVE-ALRGHLFGAGLDVTDPEPLP 261 (311)
T ss_dssp -BCCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHH-HHTTTSSEEEESSCSSSSCC
T ss_pred -cCCHHHHHhhCCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEECCCCCccCHHHHHH-HHhCcCCEEEEeeCCCCCCC
Confidence 45789999999999999998753 55664 577889999998866543221 1111 111 1 1234566666733
Q ss_pred CchhHHHHHhhcccccCCCceEEEeecCC-CCHHHHHH
Q 014834 240 MGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNV 276 (417)
Q Consensus 240 pg~~vr~ly~~G~~~~G~Gv~~liav~~d-vsgea~e~ 276 (417)
+.. .+|. .-+.+++||.. .|.++.+.
T Consensus 262 ~~~---~L~~--------~~nviltPh~~~~t~~~~~~ 288 (311)
T 2cuk_A 262 PGH---PLYA--------LPNAVITPHIGSAGRTTRER 288 (311)
T ss_dssp TTS---GGGG--------CTTEEECCSCTTCBHHHHHH
T ss_pred CCC---hhhh--------CCCEEECCcCCCCCHHHHHH
Confidence 222 2343 35788999874 34444333
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=99.11 E-value=1.1e-10 Score=115.91 Aligned_cols=108 Identities=20% Similarity=0.165 Sum_probs=83.3
Q ss_pred hhhccccccc-c---cchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCC
Q 014834 92 FIVRGGRDLF-K---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG 167 (417)
Q Consensus 92 ~~vr~g~~~f-~---~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~ 167 (417)
.-+|+|+|.. . .....+.| ++|||||+|.||.++|+.|+.. |++|++++++..+ .+.+.+.|+..
T Consensus 133 ~~~~~~~w~~~~~~~~~~~~l~g-~~vgIIG~G~iG~~iA~~l~~~------G~~V~~~d~~~~~-~~~~~~~g~~~--- 201 (330)
T 2gcg_A 133 EEVKNGGWTSWKPLWLCGYGLTQ-STVGIIGLGRIGQAIARRLKPF------GVQRFLYTGRQPR-PEEAAEFQAEF--- 201 (330)
T ss_dssp HHHHTTCCCSCCTTSSCBCCCTT-CEEEEECCSHHHHHHHHHHGGG------TCCEEEEESSSCC-HHHHHTTTCEE---
T ss_pred HHHHcCCCcccCcccccCcCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCCcc-hhHHHhcCcee---
Confidence 3467788853 1 11267999 9999999999999999999988 9999887765432 34455667764
Q ss_pred CcCCHHhhcCcCCEEEEccCCchH-HHHH-HHHHhcCCCCcEEEEec
Q 014834 168 TLGDIYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH 212 (417)
Q Consensus 168 ~~~s~~Ea~~~ADIViLavpd~~~-~~Vl-~eI~~~lk~gaiLi~a~ 212 (417)
. +.++++++||+|++++|+... ..++ +++.+.|++|++|+.++
T Consensus 202 -~-~l~e~l~~aDvVi~~vp~~~~t~~~i~~~~~~~mk~gailIn~s 246 (330)
T 2gcg_A 202 -V-STPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINIS 246 (330)
T ss_dssp -C-CHHHHHHHCSEEEECCCCCTTTTTCBSHHHHHHSCTTCEEEECS
T ss_pred -C-CHHHHHhhCCEEEEeCCCChHHHHhhCHHHHhcCCCCcEEEECC
Confidence 3 889999999999999998754 4555 46778899999888554
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.09 E-value=7.2e-11 Score=117.59 Aligned_cols=106 Identities=18% Similarity=0.156 Sum_probs=81.8
Q ss_pred hhhccccccc-c--cch----hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCcee
Q 014834 92 FIVRGGRDLF-K--LLP----DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (417)
Q Consensus 92 ~~vr~g~~~f-~--~~~----~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~ 164 (417)
.-+|+|+|.. . ... ..+.| ++|||||+|+||.++|+.|+.. |++|+++++...+ +.+.+.|+..
T Consensus 121 ~~~~~g~w~~~~~~~~~~~~~~~l~g-~~vgIIG~G~iG~~vA~~l~~~------G~~V~~~d~~~~~--~~~~~~g~~~ 191 (333)
T 2d0i_A 121 KFIRRGEWESHAKIWTGFKRIESLYG-KKVGILGMGAIGKAIARRLIPF------GVKLYYWSRHRKV--NVEKELKARY 191 (333)
T ss_dssp HHHHTTCCCCHHHHHTTSCCCCCSTT-CEEEEECCSHHHHHHHHHHGGG------TCEEEEECSSCCH--HHHHHHTEEE
T ss_pred HHHHcCCCCcCcccccCCcccCCCCc-CEEEEEccCHHHHHHHHHHHHC------CCEEEEECCCcch--hhhhhcCcee
Confidence 3467788852 1 112 57999 9999999999999999999988 9999877776443 4555667763
Q ss_pred cCCCcCCHHhhcCcCCEEEEccCCc-hHHHHHH-HHHhcCCCCcEEEEec
Q 014834 165 ENGTLGDIYETISGSDLVLLLISDA-AQADNYE-KIFSCMKPNSILGLSH 212 (417)
Q Consensus 165 ~~~~~~s~~Ea~~~ADIViLavpd~-~~~~Vl~-eI~~~lk~gaiLi~a~ 212 (417)
.+.++++++||+|++++|.. ....++. ++.+.|++| +|+.++
T Consensus 192 -----~~l~e~l~~aDiVil~vp~~~~t~~~i~~~~~~~mk~g-ilin~s 235 (333)
T 2d0i_A 192 -----MDIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGK-YLVNIG 235 (333)
T ss_dssp -----CCHHHHHHHCSEEEECCCCCTTTTTSBCHHHHHHTBTC-EEEECS
T ss_pred -----cCHHHHHhhCCEEEEcCCCChHHHHHhCHHHHhhCCCC-EEEECC
Confidence 48889999999999999988 4455664 567889999 887554
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=99.09 E-value=1.4e-10 Score=116.23 Aligned_cols=109 Identities=18% Similarity=0.129 Sum_probs=83.7
Q ss_pred hhhcccc---ccc------ccchhhccCCCEEEEEcccchHHHHHHHHH-hhhhhhcCCcEEEEEecCChhhHHHHHHcC
Q 014834 92 FIVRGGR---DLF------KLLPDAFNGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEARAAG 161 (417)
Q Consensus 92 ~~vr~g~---~~f------~~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr-~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G 161 (417)
.-+|+|+ |.. ..+ ..+.| ++|||||+|+||.++|+.|+ .. |++|+++++... ..+.+.+.|
T Consensus 137 ~~~~~g~~~~w~~~~~~~~~~~-~~l~g-~~vgIIG~G~IG~~vA~~l~~~~------G~~V~~~d~~~~-~~~~~~~~g 207 (348)
T 2w2k_A 137 RAARTGDPETFNRVHLEIGKSA-HNPRG-HVLGAVGLGAIQKEIARKAVHGL------GMKLVYYDVAPA-DAETEKALG 207 (348)
T ss_dssp HHHTTCCHHHHHHHHHHHHTTC-CCSTT-CEEEEECCSHHHHHHHHHHHHTT------CCEEEEECSSCC-CHHHHHHHT
T ss_pred HHHHcCCCcccccccccccccC-cCCCC-CEEEEEEECHHHHHHHHHHHHhc------CCEEEEECCCCc-chhhHhhcC
Confidence 4467788 831 223 68999 99999999999999999999 88 999887776543 334455567
Q ss_pred ceecCCCcCCHHhhcCcCCEEEEccCCchH-HHHH-HHHHhcCCCCcEEEEecC
Q 014834 162 FTEENGTLGDIYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 162 ~~~~~~~~~s~~Ea~~~ADIViLavpd~~~-~~Vl-~eI~~~lk~gaiLi~a~G 213 (417)
+.. +.++++++++||+|++++|+... ..++ .++.+.|++|++|+..+.
T Consensus 208 ~~~----~~~l~ell~~aDvVil~vp~~~~t~~li~~~~l~~mk~gailin~sr 257 (348)
T 2w2k_A 208 AER----VDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTAR 257 (348)
T ss_dssp CEE----CSSHHHHHHHCSEEEECCCCSGGGTTCBCHHHHHHSCTTEEEEECSC
T ss_pred cEE----eCCHHHHhccCCEEEEeCCCChHHHHHhhHHHHhcCCCCCEEEECCC
Confidence 764 44789999999999999998764 4555 367788999999886554
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.3e-09 Score=106.73 Aligned_cols=153 Identities=20% Similarity=0.174 Sum_probs=100.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecC---C--------CcCCHHhhcCcCC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN---G--------TLGDIYETISGSD 180 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~---~--------~~~s~~Ea~~~AD 180 (417)
+||+|||+|+||.++|..|.++ |.+|.++.|.. .+..++.|+...+ + .+.+.+++.+.+|
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~------g~~V~~~~r~~---~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~D 73 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKT------GHCVSVVSRSD---YETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPD 73 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHT------TCEEEEECSTT---HHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCS
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCh---HHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCC
Confidence 7999999999999999999999 99998888753 2444555653211 1 1245667766899
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEE-EEecCch-hhhhhhcccCCCCCccEEEecc------CCCchhHHHHHhhcc
Q 014834 181 LVLLLISDAAQADNYEKIFSCMKPNSIL-GLSHGFL-LGHLQSIGLDFPKNIGVIAVCP------KGMGPSVRRLYVQGK 252 (417)
Q Consensus 181 IViLavpd~~~~~Vl~eI~~~lk~gaiL-i~a~G~~-i~~~~~~~i~~~~dv~VI~v~P------ntpg~~vr~ly~~G~ 252 (417)
+||++||.....+++++|.++++++++| ++..|+. ...+.+ .+|.+ .|+.... ..|+.+. .+
T Consensus 74 lVilavK~~~~~~~l~~l~~~l~~~t~Iv~~~nGi~~~~~l~~---~~~~~-~vl~g~~~~~a~~~~pg~v~-----~~- 143 (320)
T 3i83_A 74 CTLLCIKVVEGADRVGLLRDAVAPDTGIVLISNGIDIEPEVAA---AFPDN-EVISGLAFIGVTRTAPGEIW-----HQ- 143 (320)
T ss_dssp EEEECCCCCTTCCHHHHHTTSCCTTCEEEEECSSSSCSHHHHH---HSTTS-CEEEEEEEEEEEEEETTEEE-----EE-
T ss_pred EEEEecCCCChHHHHHHHHhhcCCCCEEEEeCCCCChHHHHHH---HCCCC-cEEEEEEEeceEEcCCCEEE-----EC-
Confidence 9999999999999999999999998864 5788986 344443 34443 3443221 2233331 11
Q ss_pred cccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 253 EINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 253 ~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~ 287 (417)
|.|... ++.....+.+..+...+++...|..
T Consensus 144 ---~~~~~~-ig~~~~~~~~~~~~l~~~l~~~~~~ 174 (320)
T 3i83_A 144 ---AYGRLM-LGNYPGGVSERVKTLAAAFEEAGID 174 (320)
T ss_dssp ---EEEEEE-EEESSSCCCHHHHHHHHHHHHTTSC
T ss_pred ---CCCEEE-EecCCCCccHHHHHHHHHHHhCCCC
Confidence 223322 3332222335566677788887765
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=99.08 E-value=3e-11 Score=119.75 Aligned_cols=105 Identities=10% Similarity=0.066 Sum_probs=81.3
Q ss_pred hhcccccccccchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCH
Q 014834 93 IVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172 (417)
Q Consensus 93 ~vr~g~~~f~~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~ 172 (417)
-+|+|+|..... ..+.| ++|||||+|+||.++|+.|+.. |++|+++++..... .++... ....++
T Consensus 123 ~~~~g~W~~~~~-~~l~g-~tvGIiG~G~IG~~vA~~l~~~------G~~V~~~dr~~~~~------~~~~~~-~~~~~l 187 (315)
T 3pp8_A 123 LKNQALWKPLPE-YTREE-FSVGIMGAGVLGAKVAESLQAW------GFPLRCWSRSRKSW------PGVESY-VGREEL 187 (315)
T ss_dssp HHHTTCCCCCCC-CCSTT-CCEEEECCSHHHHHHHHHHHTT------TCCEEEEESSCCCC------TTCEEE-ESHHHH
T ss_pred HHHhcccCCCCC-CCcCC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEEcCCchhh------hhhhhh-cccCCH
Confidence 457889976644 78999 9999999999999999999988 99998887764321 233210 012478
Q ss_pred HhhcCcCCEEEEccCCchH-HHHH-HHHHhcCCCCcEEEEec
Q 014834 173 YETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH 212 (417)
Q Consensus 173 ~Ea~~~ADIViLavpd~~~-~~Vl-~eI~~~lk~gaiLi~a~ 212 (417)
+|++++||+|++++|.... ..++ .+.++.||+|++|+.++
T Consensus 188 ~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a 229 (315)
T 3pp8_A 188 RAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLA 229 (315)
T ss_dssp HHHHHTCSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEECS
T ss_pred HHHHhhCCEEEEecCCchhhhhhccHHHHhhCCCCCEEEECC
Confidence 8999999999999996654 4566 46889999999998665
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.07 E-value=4.3e-11 Score=119.11 Aligned_cols=106 Identities=10% Similarity=0.113 Sum_probs=81.2
Q ss_pred hhcccccccccchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCH
Q 014834 93 IVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172 (417)
Q Consensus 93 ~vr~g~~~f~~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~ 172 (417)
-+|+|+|........+.| ++|||||+|+||.++|+.|+.. |++|+++++...+. +.+ ..... ..++
T Consensus 120 ~~~~~~W~~~~~~~~l~g-ktvGIiGlG~IG~~vA~~l~~~------G~~V~~~dr~~~~~-~~~-~~~~~-----~~~l 185 (324)
T 3evt_A 120 QRGARQWALPMTTSTLTG-QQLLIYGTGQIGQSLAAKASAL------GMHVIGVNTTGHPA-DHF-HETVA-----FTAT 185 (324)
T ss_dssp HTTTCCSSCSSCCCCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESSCCCC-TTC-SEEEE-----GGGC
T ss_pred HHhcCCcccCCCCccccC-CeEEEECcCHHHHHHHHHHHhC------CCEEEEECCCcchh-HhH-hhccc-----cCCH
Confidence 467889976643488999 9999999999999999999988 99998887764321 111 11111 3578
Q ss_pred HhhcCcCCEEEEccCCchH-HHHH-HHHHhcCCCCcEEEEec
Q 014834 173 YETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH 212 (417)
Q Consensus 173 ~Ea~~~ADIViLavpd~~~-~~Vl-~eI~~~lk~gaiLi~a~ 212 (417)
+|++++||+|++++|.... ..++ .+.+..||+|++|+.++
T Consensus 186 ~ell~~aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~a 227 (324)
T 3evt_A 186 ADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIG 227 (324)
T ss_dssp HHHHHHCSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECS
T ss_pred HHHHhhCCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcC
Confidence 8999999999999997654 4455 46788999999999665
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.9e-11 Score=120.43 Aligned_cols=105 Identities=16% Similarity=0.172 Sum_probs=80.6
Q ss_pred hhcccccccccchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCH
Q 014834 93 IVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172 (417)
Q Consensus 93 ~vr~g~~~f~~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~ 172 (417)
-+|+|+|..... ..+.| ++|||||+|+||.++|+.|+.. |++|+++++..... ... .+... ..++
T Consensus 124 ~~~~g~W~~~~~-~~l~g-~tvGIIGlG~IG~~vA~~l~~~------G~~V~~~dr~~~~~-~~~--~~~~~----~~~l 188 (324)
T 3hg7_A 124 QQKQRLWQSHPY-QGLKG-RTLLILGTGSIGQHIAHTGKHF------GMKVLGVSRSGRER-AGF--DQVYQ----LPAL 188 (324)
T ss_dssp HHHTTCCCCCCC-CCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCCC-TTC--SEEEC----GGGH
T ss_pred HHhhCCCcCCCC-ccccc-ceEEEEEECHHHHHHHHHHHhC------CCEEEEEcCChHHh-hhh--hcccc----cCCH
Confidence 467889986555 78999 9999999999999999999998 99998777654221 110 11111 4579
Q ss_pred HhhcCcCCEEEEccCCchH-HHHHH-HHHhcCCCCcEEEEec
Q 014834 173 YETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH 212 (417)
Q Consensus 173 ~Ea~~~ADIViLavpd~~~-~~Vl~-eI~~~lk~gaiLi~a~ 212 (417)
+|++++||+|++++|.... ..++. +.+..||+|++|+.++
T Consensus 189 ~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~a 230 (324)
T 3hg7_A 189 NKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVG 230 (324)
T ss_dssp HHHHHTCSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEECS
T ss_pred HHHHhhCCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEECC
Confidence 9999999999999996654 34554 5778899999999665
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.8e-09 Score=106.02 Aligned_cols=101 Identities=18% Similarity=0.245 Sum_probs=77.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecC---------CCcCCHHhhcCcCCEE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN---------GTLGDIYETISGSDLV 182 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~---------~~~~s~~Ea~~~ADIV 182 (417)
+||+|||+|+||.++|..|.++ |++|.++ ++ +...+...+.|..... ....+.+ .++.+|+|
T Consensus 20 ~kI~IiGaGa~G~~~a~~L~~~------G~~V~l~-~~-~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~D~v 90 (318)
T 3hwr_A 20 MKVAIMGAGAVGCYYGGMLARA------GHEVILI-AR-PQHVQAIEATGLRLETQSFDEQVKVSASSDPS-AVQGADLV 90 (318)
T ss_dssp CEEEEESCSHHHHHHHHHHHHT------TCEEEEE-CC-HHHHHHHHHHCEEEECSSCEEEECCEEESCGG-GGTTCSEE
T ss_pred CcEEEECcCHHHHHHHHHHHHC------CCeEEEE-Ec-HhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHH-HcCCCCEE
Confidence 8999999999999999999999 9999877 54 3445555556654210 0023444 46899999
Q ss_pred EEccCCchHHHHHHHHHhcCCCCcEEE-EecCchh-hhhhh
Q 014834 183 LLLISDAAQADNYEKIFSCMKPNSILG-LSHGFLL-GHLQS 221 (417)
Q Consensus 183 iLavpd~~~~~Vl~eI~~~lk~gaiLi-~a~G~~i-~~~~~ 221 (417)
|++||+....+++++|.++++++++|+ ...|+.. ..+.+
T Consensus 91 ilavk~~~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~l~~ 131 (318)
T 3hwr_A 91 LFCVKSTDTQSAALAMKPALAKSALVLSLQNGVENADTLRS 131 (318)
T ss_dssp EECCCGGGHHHHHHHHTTTSCTTCEEEEECSSSSHHHHHHH
T ss_pred EEEcccccHHHHHHHHHHhcCCCCEEEEeCCCCCcHHHHHH
Confidence 999999999999999999999998654 8889976 34433
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.6e-10 Score=115.97 Aligned_cols=104 Identities=18% Similarity=0.110 Sum_probs=79.2
Q ss_pred hhc-cccccc--ccchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCc
Q 014834 93 IVR-GGRDLF--KLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL 169 (417)
Q Consensus 93 ~vr-~g~~~f--~~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~ 169 (417)
-+| +|+|.+ ......+.| ++|||||+|+||.++|+.|+.. |++|+++++...+ ..+.++. .
T Consensus 128 ~~~~~g~~~w~~~~~~~~l~g-ktvgIiGlG~IG~~vA~~l~~~------G~~V~~~d~~~~~----~~~~~~~-----~ 191 (343)
T 2yq5_A 128 RMDHDHDFTWPSNLISNEIYN-LTVGLIGVGHIGSAVAEIFSAM------GAKVIAYDVAYNP----EFEPFLT-----Y 191 (343)
T ss_dssp HHHHHCCCCCCGGGCBCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCG----GGTTTCE-----E
T ss_pred HHHHcCCcccccCCCccccCC-CeEEEEecCHHHHHHHHHHhhC------CCEEEEECCChhh----hhhcccc-----c
Confidence 345 676554 223478999 9999999999999999999988 9999877776433 1223443 3
Q ss_pred CCHHhhcCcCCEEEEccCCchH-HHHH-HHHHhcCCCCcEEEEec
Q 014834 170 GDIYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH 212 (417)
Q Consensus 170 ~s~~Ea~~~ADIViLavpd~~~-~~Vl-~eI~~~lk~gaiLi~a~ 212 (417)
.+++|++++||+|++++|.... ..++ .+.++.||+|++|+.++
T Consensus 192 ~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a 236 (343)
T 2yq5_A 192 TDFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCA 236 (343)
T ss_dssp CCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECS
T ss_pred cCHHHHHhcCCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEECC
Confidence 5899999999999999997544 3455 36788899999999665
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=3.2e-10 Score=112.91 Aligned_cols=106 Identities=12% Similarity=0.054 Sum_probs=80.0
Q ss_pred hhhccccccccc-chhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcC
Q 014834 92 FIVRGGRDLFKL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170 (417)
Q Consensus 92 ~~vr~g~~~f~~-~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~ 170 (417)
.-+|+|+|.+.. ....+.| ++|||||+|+||.++|+.|+.. |++|+++++...+. +.+ ++.. ..
T Consensus 127 ~~~~~g~w~~~~~~~~~l~g-~~vgIiG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~~---~~~-~~~~----~~ 191 (333)
T 1j4a_A 127 EKVARHDLRWAPTIGREVRD-QVVGVVGTGHIGQVFMQIMEGF------GAKVITYDIFRNPE---LEK-KGYY----VD 191 (333)
T ss_dssp HHHHTTBCCCTTCCBCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCHH---HHH-TTCB----CS
T ss_pred HHHHcCCCccCCcccccCCC-CEEEEEccCHHHHHHHHHHHHC------CCEEEEECCCcchh---HHh-hCee----cC
Confidence 345778885432 2368999 9999999999999999999988 99998877764432 222 3332 33
Q ss_pred CHHhhcCcCCEEEEccCCchH-HHHH-HHHHhcCCCCcEEEEec
Q 014834 171 DIYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH 212 (417)
Q Consensus 171 s~~Ea~~~ADIViLavpd~~~-~~Vl-~eI~~~lk~gaiLi~a~ 212 (417)
+++|++++||+|++++|.... ..++ ++..+.||+|++|+.++
T Consensus 192 ~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~a 235 (333)
T 1j4a_A 192 SLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVS 235 (333)
T ss_dssp CHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECS
T ss_pred CHHHHHhhCCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECC
Confidence 789999999999999997654 4555 35778899999888554
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.1e-09 Score=108.04 Aligned_cols=94 Identities=17% Similarity=0.231 Sum_probs=74.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecC---------CCcCCHHhhcCcCCEE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN---------GTLGDIYETISGSDLV 182 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~---------~~~~s~~Ea~~~ADIV 182 (417)
+||+|||+|+||.++|..|.++ |++|.+.+|. +..+..++.|+.... ....+.++ +..+|+|
T Consensus 4 mkI~IiGaG~~G~~~a~~L~~~------g~~V~~~~r~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~V 74 (335)
T 3ghy_A 4 TRICIVGAGAVGGYLGARLALA------GEAINVLARG--ATLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVV 74 (335)
T ss_dssp CCEEEESCCHHHHHHHHHHHHT------TCCEEEECCH--HHHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEE
T ss_pred CEEEEECcCHHHHHHHHHHHHC------CCEEEEEECh--HHHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEE
Confidence 7999999999999999999999 9999888774 345566667765310 01235655 5899999
Q ss_pred EEccCCchHHHHHHHHHhcCCCCcEEE-EecCc
Q 014834 183 LLLISDAAQADNYEKIFSCMKPNSILG-LSHGF 214 (417)
Q Consensus 183 iLavpd~~~~~Vl~eI~~~lk~gaiLi-~a~G~ 214 (417)
|++||+....+++++|.++++++++|+ +..|+
T Consensus 75 ilavk~~~~~~~~~~l~~~l~~~~~iv~~~nGi 107 (335)
T 3ghy_A 75 IVAVKAPALESVAAGIAPLIGPGTCVVVAMNGV 107 (335)
T ss_dssp EECCCHHHHHHHHGGGSSSCCTTCEEEECCSSS
T ss_pred EEeCCchhHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 999999988999999999999998655 67785
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.9e-09 Score=110.81 Aligned_cols=208 Identities=12% Similarity=0.054 Sum_probs=116.1
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHc-------------------CceecCCCcCC
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-------------------GFTEENGTLGD 171 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~-------------------G~~~~~~~~~s 171 (417)
|+||+|||+|.||.++|.+|.+. |.|++|++++++.+ ..+...+. ++.. +.+
T Consensus 9 ~mkI~VIG~G~vG~~~A~~La~~----g~g~~V~~~D~~~~-~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~----t~~ 79 (481)
T 2o3j_A 9 VSKVVCVGAGYVGGPTCAMIAHK----CPHITVTVVDMNTA-KIAEWNSDKLPIYEPGLDEIVFAARGRNLFF----SSD 79 (481)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHH----CTTSEEEEECSCHH-HHHHHTSSSCSSCCTTHHHHHHHHBTTTEEE----ESC
T ss_pred CCEEEEECCCHHHHHHHHHHHhc----CCCCEEEEEECCHH-HHHHHHCCCCCcCCCCHHHHHHHhhcCCEEE----ECC
Confidence 47999999999999999999887 22478877766533 23332221 1221 346
Q ss_pred HHhhcCcCCEEEEccCCch---------------HHHHHHHHHhcCCCCcEEEEecCchhh---hhhhcccC-CC--CCc
Q 014834 172 IYETISGSDLVLLLISDAA---------------QADNYEKIFSCMKPNSILGLSHGFLLG---HLQSIGLD-FP--KNI 230 (417)
Q Consensus 172 ~~Ea~~~ADIViLavpd~~---------------~~~Vl~eI~~~lk~gaiLi~a~G~~i~---~~~~~~i~-~~--~dv 230 (417)
+.+++++||+||+++|... ..+++++|.+++++|++|++.+.+... .+...... .+ ..+
T Consensus 80 ~~~~~~~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~~~~~~~~~ 159 (481)
T 2o3j_A 80 IPKAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAAESIGCILREAQKNNENL 159 (481)
T ss_dssp HHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHTC----C
T ss_pred HHHHhhcCCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHHhhCcCcCC
Confidence 7788899999999987532 567888899999999998887655322 11110000 11 123
Q ss_pred c-EEEeccCC--CchhHHHHHhhcccccCCCceEEEeecCC-CCHHHHHHHHHHHHHhCC-Cceeccchhhhhhhhcccc
Q 014834 231 G-VIAVCPKG--MGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVALGWSVALGS-PFTFATTLEQEYKSDIFGE 305 (417)
Q Consensus 231 ~-VI~v~Pnt--pg~~vr~ly~~G~~~~G~Gv~~liav~~d-vsgea~e~a~~L~~alG~-~~~iettf~~e~~~dl~ge 305 (417)
+ .+..+|.. |+..+..++... ..++....+ .+.++.+.+..++..+|. ...+.+.... .+.-.+-+
T Consensus 160 d~~v~~~Pe~~~~G~a~~~~~~~~--------~iviG~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~d~~~-ae~~Kl~~ 230 (481)
T 2o3j_A 160 KFQVLSNPEFLAEGTAMKDLANPD--------RVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTNTWS-SELSKLVA 230 (481)
T ss_dssp CEEEEECCCCCCTTCHHHHHHSCS--------CEEEEECSSHHHHHHHHHHHHHHHTTSCGGGEEEEEHHH-HHHHHHHH
T ss_pred ceEEEeCcccccccchhhcccCCC--------EEEEEecCchhhHHHHHHHHHHHHhhcCCCeEEecCHHH-HHHHHHHH
Confidence 3 25677753 343333222211 122332221 112577888899999985 3222222111 11111212
Q ss_pred chhhhchHHHHHHHHHHHHHHcCCCHHHHHHH
Q 014834 306 RGILLGAVHGIVESLFRRFTENGMSEDLAYKN 337 (417)
Q Consensus 306 ~t~L~G~~pA~iea~~d~~v~~Gl~~e~A~~~ 337 (417)
.+. ....-+++.-+...+.+.|++.++....
T Consensus 231 N~~-~a~~ia~~nE~~~la~~~Gid~~~v~~~ 261 (481)
T 2o3j_A 231 NAF-LAQRISSINSISAVCEATGAEISEVAHA 261 (481)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 211 1122235555666777788888766654
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=99.02 E-value=2.6e-09 Score=110.60 Aligned_cols=200 Identities=13% Similarity=0.093 Sum_probs=119.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH-------------------cC-ceecCCCcCC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------------------AG-FTEENGTLGD 171 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~-------------------~G-~~~~~~~~~s 171 (417)
-+|+|||+|.||.++|.+|.+. |++|++++++.++. +...+ .| +.. +.+
T Consensus 9 ~~~~vIGlG~vG~~~A~~La~~------G~~V~~~D~~~~kv-~~l~~g~~~~~epgl~~~~~~~~~~g~l~~----ttd 77 (446)
T 4a7p_A 9 VRIAMIGTGYVGLVSGACFSDF------GHEVVCVDKDARKI-ELLHQNVMPIYEPGLDALVASNVKAGRLSF----TTD 77 (446)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCSTTH-HHHTTTCCSSCCTTHHHHHHHHHHTTCEEE----ESC
T ss_pred eEEEEEcCCHHHHHHHHHHHHC------CCEEEEEeCCHHHH-HHHhcCCCCccCCCHHHHHHhhcccCCEEE----ECC
Confidence 5899999999999999999999 99998887765543 22222 12 222 468
Q ss_pred HHhhcCcCCEEEEccCCc-----------hHHHHHHHHHhcCCCCcEEEEecCchhhh-------hhhcccCCCCCccEE
Q 014834 172 IYETISGSDLVLLLISDA-----------AQADNYEKIFSCMKPNSILGLSHGFLLGH-------LQSIGLDFPKNIGVI 233 (417)
Q Consensus 172 ~~Ea~~~ADIViLavpd~-----------~~~~Vl~eI~~~lk~gaiLi~a~G~~i~~-------~~~~~i~~~~dv~VI 233 (417)
+++++++||+||+|+|.. ...+++++|.+++++|++|++.+++.... +.+. ....++ .+
T Consensus 78 ~~ea~~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e~--~~~~d~-~v 154 (446)
T 4a7p_A 78 LAEGVKDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKSTVPVGTGDEVERIIAEV--APNSGA-KV 154 (446)
T ss_dssp HHHHHTTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHHH--STTSCC-EE
T ss_pred HHHHHhcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHh--CCCCCc-eE
Confidence 889999999999997744 36678889999999999999888764321 1111 111233 34
Q ss_pred EeccCCCch--hHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC---ceeccchhhhhhhhccccchh
Q 014834 234 AVCPKGMGP--SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP---FTFATTLEQEYKSDIFGERGI 308 (417)
Q Consensus 234 ~v~Pntpg~--~vr~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~---~~iettf~~e~~~dl~ge~t~ 308 (417)
...|..... .+++... .+. +.+.. .+.++.+.+..++..++.. ..+-+.. ...+.-.+.+.+.
T Consensus 155 ~~~Pe~a~eG~a~~d~~~---------p~~-ivvG~-~~~~~~~~~~~ly~~~~~~~~~~~~~~d~-~~aE~~Kl~~N~~ 222 (446)
T 4a7p_A 155 VSNPEFLREGAAIEDFKR---------PDR-VVVGT-EDEFARQVMREIYRPLSLNQSAPVLFTGR-RTSELIKYAANAF 222 (446)
T ss_dssp EECCCCCCTTSHHHHHHS---------CSC-EEEEC-SCHHHHHHHHHHHCSCC-----CEEEECH-HHHHHHHHHHHHH
T ss_pred EeCcccccccchhhhccC---------CCE-EEEeC-CcHHHHHHHHHHHHHHhcCCCeEEEeCCH-HHHHHHHHHHHHH
Confidence 556643222 1111110 112 22222 1457888889999888753 1111111 1111111222221
Q ss_pred hhchHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 014834 309 LLGAVHGIVESLFRRFTENGMSEDLAYKNT 338 (417)
Q Consensus 309 L~G~~pA~iea~~d~~v~~Gl~~e~A~~~~ 338 (417)
...--+++.-+...+.+.|+++++.+..+
T Consensus 223 -~a~~ia~~nE~~~l~~~~GiD~~~v~~~~ 251 (446)
T 4a7p_A 223 -LAVKITFINEIADLCEQVGADVQEVSRGI 251 (446)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 12223355556777788899988776643
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=2.4e-10 Score=116.89 Aligned_cols=105 Identities=19% Similarity=0.174 Sum_probs=79.7
Q ss_pred hhhccccccccc-chhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcC
Q 014834 92 FIVRGGRDLFKL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170 (417)
Q Consensus 92 ~~vr~g~~~f~~-~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~ 170 (417)
.-+|+|+|.... ...++.| |+|||||+|+||..+|+.++.. |++|+++++..... ..++.. ..
T Consensus 126 ~~~~~g~W~~~~~~~~el~g-ktlGiIGlG~IG~~vA~~l~~~------G~~V~~~d~~~~~~-----~~~~~~----~~ 189 (404)
T 1sc6_A 126 AKAHRGVGNKLAAGSFEARG-KKLGIIGYGHIGTQLGILAESL------GMYVYFYDIENKLP-----LGNATQ----VQ 189 (404)
T ss_dssp HHHHHTCCC-----CCCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCCC-----CTTCEE----CS
T ss_pred HHHHcCCccccCCCccccCC-CEEEEEeECHHHHHHHHHHHHC------CCEEEEEcCCchhc-----cCCcee----cC
Confidence 346788996432 2368999 9999999999999999999988 99998777653221 112432 45
Q ss_pred CHHhhcCcCCEEEEccCCchH-HHHH-HHHHhcCCCCcEEEEec
Q 014834 171 DIYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH 212 (417)
Q Consensus 171 s~~Ea~~~ADIViLavpd~~~-~~Vl-~eI~~~lk~gaiLi~a~ 212 (417)
+++|++++||+|++++|.... ..++ ++.++.||+|++|+.++
T Consensus 190 ~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN~a 233 (404)
T 1sc6_A 190 HLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINAS 233 (404)
T ss_dssp CHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECS
T ss_pred CHHHHHhcCCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEECC
Confidence 899999999999999998754 4566 45778899999998665
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=99.02 E-value=3e-09 Score=110.00 Aligned_cols=208 Identities=14% Similarity=0.087 Sum_probs=115.1
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHH---------------H----cCceecCCCcCC
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR---------------A----AGFTEENGTLGD 171 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~---------------~----~G~~~~~~~~~s 171 (417)
|+||+|||+|.||.++|.+|.+. |.|++|++++++.++ .+... + .++.. +.+
T Consensus 5 ~mkI~VIG~G~mG~~lA~~La~~----g~G~~V~~~d~~~~~-~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~----t~~ 75 (467)
T 2q3e_A 5 IKKICCIGAGYVGGPTCSVIAHM----CPEIRVTVVDVNESR-INAWNSPTLPIYEPGLKEVVESCRGKNLFF----STN 75 (467)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHH----CTTSEEEEECSCHHH-HHHHTSSSCSSCCTTHHHHHHHHBTTTEEE----ESC
T ss_pred ccEEEEECCCHHHHHHHHHHHhc----CCCCEEEEEECCHHH-HHHHhCCCCCcCCCCHHHHHHHhhcCCEEE----ECC
Confidence 57999999999999999999876 224788877665332 22211 1 23432 457
Q ss_pred HHhhcCcCCEEEEccCCch---------------HHHHHHHHHhcCCCCcEEEEecCchhhh---hhhcc-cCCCCCcc-
Q 014834 172 IYETISGSDLVLLLISDAA---------------QADNYEKIFSCMKPNSILGLSHGFLLGH---LQSIG-LDFPKNIG- 231 (417)
Q Consensus 172 ~~Ea~~~ADIViLavpd~~---------------~~~Vl~eI~~~lk~gaiLi~a~G~~i~~---~~~~~-i~~~~dv~- 231 (417)
+++++++||+||+++|... ..+++++|.+++++|++|++.+.+.+.. +.... ......++
T Consensus 76 ~~e~~~~aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~~~~~~d~ 155 (467)
T 2q3e_A 76 IDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNL 155 (467)
T ss_dssp HHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHTCCTTCEE
T ss_pred HHHHHhcCCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHHHHhCCCCCCe
Confidence 8889999999999998543 3467778999999999888765543211 11100 01111233
Q ss_pred EEEeccCC--CchhHHHHHhhcccccCCCceEEEee-cCCCCHHHHHHHHHHHHHh-CCCceeccchhhhhhhhccccch
Q 014834 232 VIAVCPKG--MGPSVRRLYVQGKEINGAGINSSFAV-HQDVDGRATNVALGWSVAL-GSPFTFATTLEQEYKSDIFGERG 307 (417)
Q Consensus 232 VI~v~Pnt--pg~~vr~ly~~G~~~~G~Gv~~liav-~~dvsgea~e~a~~L~~al-G~~~~iettf~~e~~~dl~ge~t 307 (417)
.|...|.. ++..+.+++... ..++.. ....+.+..+.+..++..+ |...++.+.... -+..-+.+.+
T Consensus 156 ~V~~~Pe~~~~G~~~~d~~~~~--------rivvGg~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~-ae~~Kl~~N~ 226 (467)
T 2q3e_A 156 QVLSNPEFLAEGTAIKDLKNPD--------RVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWS-SELSKLAANA 226 (467)
T ss_dssp EEEECCCCCCTTSHHHHHHSCS--------CEEEECCSSHHHHHHHHHHHHHHTTTSCGGGEEEECHHH-HHHHHHHHHH
T ss_pred EEEeCHHHhhcccchhhccCCC--------EEEECCCCCCCCHHHHHHHHHHHHHhccCCeEEecCHHH-HHHHHHHHHH
Confidence 23455543 333333332211 122331 1113567889999999998 543222221110 0111121111
Q ss_pred hhhchHHHHHHHHHHHHHHcCCCHHHHHHH
Q 014834 308 ILLGAVHGIVESLFRRFTENGMSEDLAYKN 337 (417)
Q Consensus 308 ~L~G~~pA~iea~~d~~v~~Gl~~e~A~~~ 337 (417)
. ....-+++.-++..+.+.|+++++....
T Consensus 227 ~-~a~~ia~~nE~~~l~~~~Gid~~~v~~~ 255 (467)
T 2q3e_A 227 F-LAQRISSINSISALCEATGADVEEVATA 255 (467)
T ss_dssp H-HHHHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 1 1122234555666667778887766553
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.00 E-value=1.7e-09 Score=105.86 Aligned_cols=96 Identities=21% Similarity=0.221 Sum_probs=75.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHc-CceecC----------CCcCCHHhhcCcCC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEEN----------GTLGDIYETISGSD 180 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~-G~~~~~----------~~~~s~~Ea~~~AD 180 (417)
+||+|||+|.||..+|..|.+. |++|.+.+|+.++ .+...+. |+...+ ....+++++++++|
T Consensus 5 mki~iiG~G~~G~~~a~~L~~~------g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 77 (359)
T 1bg6_A 5 KTYAVLGLGNGGHAFAAYLALK------GQSVLAWDIDAQR-IKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDAD 77 (359)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHHH-HHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCS
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCEEEEEeCCHHH-HHHHHhcCCeEEeccccccccccceecCCHHHHHhcCC
Confidence 6999999999999999999998 9998877765433 3333333 431100 01457888889999
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 181 IViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
+||+++|+..+.++++++.++++++++|+...|.
T Consensus 78 ~vi~~v~~~~~~~~~~~l~~~l~~~~~vv~~~~~ 111 (359)
T 1bg6_A 78 VILIVVPAIHHASIAANIASYISEGQLIILNPGA 111 (359)
T ss_dssp EEEECSCGGGHHHHHHHHGGGCCTTCEEEESSCC
T ss_pred EEEEeCCchHHHHHHHHHHHhCCCCCEEEEcCCC
Confidence 9999999999999999999999999988777773
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.1e-08 Score=105.44 Aligned_cols=198 Identities=10% Similarity=0.065 Sum_probs=112.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH------------------cCceecCCCcCCHH
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA------------------AGFTEENGTLGDIY 173 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~------------------~G~~~~~~~~~s~~ 173 (417)
+||+|||+|.||.++|..|. . |++|+++++..+ ..+...+ .++.. +.+++
T Consensus 37 mkIaVIGlG~mG~~lA~~La-~------G~~V~~~D~~~~-~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~----ttd~~ 104 (432)
T 3pid_A 37 MKITISGTGYVGLSNGVLIA-Q------NHEVVALDIVQA-KVDMLNQKISPIVDKEIQEYLAEKPLNFRA----TTDKH 104 (432)
T ss_dssp CEEEEECCSHHHHHHHHHHH-T------TSEEEEECSCHH-HHHHHHTTCCSSCCHHHHHHHHHSCCCEEE----ESCHH
T ss_pred CEEEEECcCHHHHHHHHHHH-c------CCeEEEEecCHH-HhhHHhccCCccccccHHHHHhhccCCeEE----EcCHH
Confidence 79999999999999999876 4 889887766533 3333222 12332 46788
Q ss_pred hhcCcCCEEEEccCCc-----------hHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCC--C
Q 014834 174 ETISGSDLVLLLISDA-----------AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKG--M 240 (417)
Q Consensus 174 Ea~~~ADIViLavpd~-----------~~~~Vl~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pnt--p 240 (417)
+++++||+||+++|.. ...++++.|.+ +++|++|++.+.+.....+.....+.+. .+...|.. |
T Consensus 105 ea~~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~~--~v~~sPe~~~~ 181 (432)
T 3pid_A 105 DAYRNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVGFTRDIKERLGID--NVIFSPEFLRE 181 (432)
T ss_dssp HHHTTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTTHHHHHHHHHTCC--CEEECCCCCCT
T ss_pred HHHhCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChHHHHHHHHHHhhc--cEeecCccCCc
Confidence 9999999999999976 34567788999 9999999988876443221101122221 33446743 2
Q ss_pred chhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHH--hCCC-ceeccchhhhhhhhccccchhhhchHHHHH
Q 014834 241 GPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA--LGSP-FTFATTLEQEYKSDIFGERGILLGAVHGIV 317 (417)
Q Consensus 241 g~~vr~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~a--lG~~-~~iettf~~e~~~dl~ge~t~L~G~~pA~i 317 (417)
+..+..... .+. +.+..+ .+..+.+..++.. ++.. .++.+.... -+.-.+-+.+ +...--+++
T Consensus 182 G~A~~~~l~---------p~r-IvvG~~--~~~~~~~~~ll~~~~~~~~~~v~~~~~~~-AE~~Kl~~N~-~~a~~Ia~~ 247 (432)
T 3pid_A 182 GRALYDNLH---------PSR-IVIGER--SARAERFADLLKEGAIKQDIPTLFTDSTE-AEAIKLFANT-YLALRVAYF 247 (432)
T ss_dssp TSHHHHHHS---------CSC-EEESSC--SHHHHHHHHHHHHHCSSSSCCEEECCHHH-HHHHHHHHHH-HHHHHHHHH
T ss_pred chhhhcccC---------Cce-EEecCC--HHHHHHHHHHHHhhhccCCCeEEecCccH-HHHHHHHHHH-HHHHHHHHH
Confidence 222211111 112 222332 3455667777765 4432 122222111 1111122222 122223345
Q ss_pred HHHHHHHHHcCCCHHHHHHHH
Q 014834 318 ESLFRRFTENGMSEDLAYKNT 338 (417)
Q Consensus 318 ea~~d~~v~~Gl~~e~A~~~~ 338 (417)
--+...+.+.|++.++.++.+
T Consensus 248 nEl~~lae~~GiD~~~v~~~~ 268 (432)
T 3pid_A 248 NELDSYAESQGLNSKQIIEGV 268 (432)
T ss_dssp HHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHH
Confidence 556667778888887766643
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.99 E-value=4.8e-10 Score=115.21 Aligned_cols=104 Identities=15% Similarity=0.161 Sum_probs=78.7
Q ss_pred hhccccccccc-chhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCC
Q 014834 93 IVRGGRDLFKL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (417)
Q Consensus 93 ~vr~g~~~f~~-~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s 171 (417)
-+|+|+|.... ...++.| |+|||||+|+||.++|+.++.. |++|+++++..... ..+... ..+
T Consensus 138 ~~~~g~W~~~~~~~~el~g-ktvGIIGlG~IG~~vA~~l~~~------G~~V~~yd~~~~~~-----~~~~~~----~~s 201 (416)
T 3k5p_A 138 SAHAGGWEKTAIGSREVRG-KTLGIVGYGNIGSQVGNLAESL------GMTVRYYDTSDKLQ-----YGNVKP----AAS 201 (416)
T ss_dssp HHHTTCCCCCCTTCCCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECTTCCCC-----BTTBEE----CSS
T ss_pred hhhcccccccCCCCccCCC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEECCcchhc-----ccCcEe----cCC
Confidence 46788997543 2478999 9999999999999999999988 99998777643211 123332 568
Q ss_pred HHhhcCcCCEEEEccCCchHH-HHH-HHHHhcCCCCcEEEEec
Q 014834 172 IYETISGSDLVLLLISDAAQA-DNY-EKIFSCMKPNSILGLSH 212 (417)
Q Consensus 172 ~~Ea~~~ADIViLavpd~~~~-~Vl-~eI~~~lk~gaiLi~a~ 212 (417)
++|++++||+|++++|..... .++ .+.+..||+|++|+.++
T Consensus 202 l~ell~~aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~a 244 (416)
T 3k5p_A 202 LDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNA 244 (416)
T ss_dssp HHHHHHHCSEEEECCCC-----CCBCHHHHHHSCTTEEEEECS
T ss_pred HHHHHhhCCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEECC
Confidence 999999999999999987654 455 36788899999998655
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=98.98 E-value=4.1e-10 Score=112.06 Aligned_cols=105 Identities=15% Similarity=0.083 Sum_probs=80.0
Q ss_pred hhhccccccc--ccchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCc
Q 014834 92 FIVRGGRDLF--KLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL 169 (417)
Q Consensus 92 ~~vr~g~~~f--~~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~ 169 (417)
.-+|+|+|.+ ......+.| ++|||||+|.||.++|+.|+.. |++|+++++...+. + +.++. .
T Consensus 126 ~~~~~g~w~~~~~~~~~~l~g-~~vgIiG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~~---~-~~~~~-----~ 189 (331)
T 1xdw_A 126 SRTAKKNFKVDAFMFSKEVRN-CTVGVVGLGRIGRVAAQIFHGM------GATVIGEDVFEIKG---I-EDYCT-----Q 189 (331)
T ss_dssp HHHTTTCCCCCSTTCCCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCCS---C-TTTCE-----E
T ss_pred HHHHcCCCccccCcCccCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCccHH---H-Hhccc-----c
Confidence 3467788864 122368999 9999999999999999999988 99998877754332 1 12333 3
Q ss_pred CCHHhhcCcCCEEEEccCCchH-HHHH-HHHHhcCCCCcEEEEec
Q 014834 170 GDIYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH 212 (417)
Q Consensus 170 ~s~~Ea~~~ADIViLavpd~~~-~~Vl-~eI~~~lk~gaiLi~a~ 212 (417)
.++++++++||+|++++|.... ..++ ++..+.||+|++|+.++
T Consensus 190 ~~l~ell~~aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~s 234 (331)
T 1xdw_A 190 VSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCA 234 (331)
T ss_dssp CCHHHHHHHCSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEECS
T ss_pred CCHHHHHhhCCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEECC
Confidence 5899999999999999997653 3455 46778899999988665
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=3.1e-10 Score=113.03 Aligned_cols=105 Identities=17% Similarity=0.201 Sum_probs=80.0
Q ss_pred hhhccccccc--ccchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCc
Q 014834 92 FIVRGGRDLF--KLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL 169 (417)
Q Consensus 92 ~~vr~g~~~f--~~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~ 169 (417)
.-+|+|+|.+ ......+.| ++|||||+|.||.++|+.|+.. |++|+++++...+. + +.++. .
T Consensus 125 ~~~~~g~w~~~~~~~~~~l~g-~~vgIiG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~~---~-~~~~~-----~ 188 (333)
T 1dxy_A 125 AQLQAGDYEKAGTFIGKELGQ-QTVGVMGTGHIGQVAIKLFKGF------GAKVIAYDPYPMKG---D-HPDFD-----Y 188 (333)
T ss_dssp HHHHTTCHHHHTCCCCCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCSS---C-CTTCE-----E
T ss_pred HHHHcCCcccccCCCccCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCcchh---h-Hhccc-----c
Confidence 3467788754 222378999 9999999999999999999988 99998777654332 1 12233 3
Q ss_pred CCHHhhcCcCCEEEEccCCchH-HHHH-HHHHhcCCCCcEEEEec
Q 014834 170 GDIYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH 212 (417)
Q Consensus 170 ~s~~Ea~~~ADIViLavpd~~~-~~Vl-~eI~~~lk~gaiLi~a~ 212 (417)
.+++|++++||+|++++|.... ..++ ++.++.||+|++|+.++
T Consensus 189 ~~l~ell~~aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~s 233 (333)
T 1dxy_A 189 VSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTA 233 (333)
T ss_dssp CCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECS
T ss_pred CCHHHHHhcCCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEECC
Confidence 5889999999999999998764 4556 46778899999988554
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=4e-08 Score=97.65 Aligned_cols=152 Identities=13% Similarity=0.139 Sum_probs=114.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChh----------hHHHHHHcCceecC----------CCcCC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----------SFAEARAAGFTEEN----------GTLGD 171 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~----------s~~~A~~~G~~~~~----------~~~~s 171 (417)
.||+|||.|.||..+|..+..+ |++|++.+...+. .+....+.|..... ..+.+
T Consensus 7 ~~VaViGaG~MG~giA~~~a~~------G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~ 80 (319)
T 3ado_A 7 GDVLIVGSGLVGRSWAMLFASG------GFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTN 80 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECC
T ss_pred CeEEEECCcHHHHHHHHHHHhC------CCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccc
Confidence 7999999999999999999999 9999888765321 11112223321100 01457
Q ss_pred HHhhcCcCCEEEEccCCchH--HHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHH
Q 014834 172 IYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (417)
Q Consensus 172 ~~Ea~~~ADIViLavpd~~~--~~Vl~eI~~~lk~gaiLi-~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly 248 (417)
++|++++||+|+=++|-... .++|.+|-++.+|+++|. -++++.+..+.+ .....-+|+..||=-|.+.
T Consensus 81 l~~a~~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl~is~ia~---~~~~p~r~ig~HffNP~~~----- 152 (319)
T 3ado_A 81 LAEAVEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSKLFT---GLAHVKQCIVAHPVNPPYY----- 152 (319)
T ss_dssp HHHHTTTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSSCCHHHHHT---TCTTGGGEEEEEECSSTTT-----
T ss_pred hHhHhccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhhccchhhhh---hccCCCcEEEecCCCCccc-----
Confidence 88999999999999997665 369999999999999875 778888877765 2333348999999888887
Q ss_pred hhcccccCCCceEE-EeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 249 VQGKEINGAGINSS-FAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 249 ~~G~~~~G~Gv~~l-iav~~dvsgea~e~a~~L~~alG~~ 287 (417)
|+.+ +.++...+.+..+.+.++...+|..
T Consensus 153 ----------m~LVEiv~g~~Ts~~~~~~~~~~~~~~gk~ 182 (319)
T 3ado_A 153 ----------IPLVELVPHPETSPATVDRTHALMRKIGQS 182 (319)
T ss_dssp ----------CCEEEEEECTTCCHHHHHHHHHHHHHTTCE
T ss_pred ----------cchHHhcCCCCCcHHHHHHHHHHHHHhCCc
Confidence 3332 3457778889999999999999964
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=4.8e-08 Score=99.22 Aligned_cols=94 Identities=13% Similarity=0.043 Sum_probs=68.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec------------C--CCcCCHHhhcC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE------------N--GTLGDIYETIS 177 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~------------~--~~~~s~~Ea~~ 177 (417)
+||+|||+|.||.++|..|.+ |++|++.+++. ...+...+.+.... . ....+..++++
T Consensus 1 MkI~VIG~G~vG~~~A~~La~-------G~~V~~~d~~~-~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~ 72 (402)
T 1dlj_A 1 MKIAVAGSGYVGLSLGVLLSL-------QNEVTIVDILP-SKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYK 72 (402)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-------TSEEEEECSCH-HHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHhC-------CCEEEEEECCH-HHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhc
Confidence 589999999999999999874 67887776653 33344443343100 0 01346778889
Q ss_pred cCCEEEEccCCc-----------hHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 178 GSDLVLLLISDA-----------AQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 178 ~ADIViLavpd~-----------~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
++|+||+++|+. ...+++++|.+ ++++++|++.+..
T Consensus 73 ~aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~ST~ 119 (402)
T 1dlj_A 73 EAELVIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKSTI 119 (402)
T ss_dssp HCSEEEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSCC
T ss_pred CCCEEEEecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEEeCCC
Confidence 999999999987 46788889999 9999988874433
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=98.82 E-value=7.5e-09 Score=104.17 Aligned_cols=94 Identities=18% Similarity=0.241 Sum_probs=70.9
Q ss_pred CCEEEEEcccchHHHHHHHHHh-hhhhhcCCcEEEEEe---cCChhhHHHH-HHcCcee----cCC-----------CcC
Q 014834 111 INQIGVIGWGSQGPAQAQNLRD-SLAEAKSDIVVKVGL---RKGSRSFAEA-RAAGFTE----ENG-----------TLG 170 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~-s~~~~~~G~~ViVg~---r~~s~s~~~A-~~~G~~~----~~~-----------~~~ 170 (417)
|+||+|||+|+||.++|..|.. . |++|.+++ |. ....+.+ ++.|... .++ ...
T Consensus 2 ~mkI~ViGaG~~G~~~a~~La~~~------G~~V~~~~~~~r~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 74 (404)
T 3c7a_A 2 TVKVCVCGGGNGAHTLSGLAASRD------GVEVRVLTLFADE-AERWTKALGADELTVIVNEKDGTQTEVKSRPKVITK 74 (404)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTST------TEEEEEECCSTTH-HHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEES
T ss_pred CceEEEECCCHHHHHHHHHHHhCC------CCEEEEEeCCCCc-HHHHHHHHhhccceeeeecCCCccceeeccceEEeC
Confidence 3699999999999999999976 7 88998877 43 2233332 3333110 001 235
Q ss_pred CHHhhcCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 171 DIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 171 s~~Ea~~~ADIViLavpd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
+++++++++|+||++||+....+++++|.++++++++|+..
T Consensus 75 ~~~~a~~~aD~Vilav~~~~~~~v~~~l~~~l~~~~ivv~~ 115 (404)
T 3c7a_A 75 DPEIAISGADVVILTVPAFAHEGYFQAMAPYVQDSALIVGL 115 (404)
T ss_dssp CHHHHHTTCSEEEECSCGGGHHHHHHHHTTTCCTTCEEEET
T ss_pred CHHHHhCCCCEEEEeCchHHHHHHHHHHHhhCCCCcEEEEc
Confidence 68888999999999999999999999999999999887753
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.1e-07 Score=99.33 Aligned_cols=202 Identities=19% Similarity=0.168 Sum_probs=117.2
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCh----hhHHHHH--------------------HcC-ce
Q 014834 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGS----RSFAEAR--------------------AAG-FT 163 (417)
Q Consensus 110 gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s----~s~~~A~--------------------~~G-~~ 163 (417)
-++||+|||+|.||.++|.+|.+. .|+ +|++++++.+ +...... ..| +.
T Consensus 17 ~~mkIaVIGlG~mG~~lA~~la~~-----~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~ 91 (478)
T 3g79_A 17 PIKKIGVLGMGYVGIPAAVLFADA-----PCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFE 91 (478)
T ss_dssp SCCEEEEECCSTTHHHHHHHHHHS-----TTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEE
T ss_pred CCCEEEEECcCHHHHHHHHHHHHh-----CCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeE
Confidence 358999999999999999999875 268 8988877654 2211111 012 22
Q ss_pred ecCCCcCCHHhhcCcCCEEEEccCCch------------HHHHHHHHHhcCCCCcEEEEecCchhhh---hh------hc
Q 014834 164 EENGTLGDIYETISGSDLVLLLISDAA------------QADNYEKIFSCMKPNSILGLSHGFLLGH---LQ------SI 222 (417)
Q Consensus 164 ~~~~~~~s~~Ea~~~ADIViLavpd~~------------~~~Vl~eI~~~lk~gaiLi~a~G~~i~~---~~------~~ 222 (417)
. ..+ .+++++||+||+++|... ...+.+.|.+++++|++|++.+++.... +. ..
T Consensus 92 ~----ttd-~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~~ile~~~ 166 (478)
T 3g79_A 92 C----TPD-FSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAKQILEEES 166 (478)
T ss_dssp E----ESC-GGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHHHHHHHHH
T ss_pred E----eCc-HHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHHHHHHHhc
Confidence 1 234 688999999999998653 3455678999999999999888764321 11 11
Q ss_pred ccCCCCCccEEEeccC--CCchhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHh-CCCceeccchhhhhh
Q 014834 223 GLDFPKNIGVIAVCPK--GMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVAL-GSPFTFATTLEQEYK 299 (417)
Q Consensus 223 ~i~~~~dv~VI~v~Pn--tpg~~vr~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~al-G~~~~iettf~~e~~ 299 (417)
+.....++ .+.-.|. .+|..+..... .+.++ ... +.+..+.+..++..+ +...+.-+.. ..-+
T Consensus 167 g~~~~~d~-~v~~~Pe~~~~G~a~~~~~~---------~~~Iv-~G~--~~~~~~~~~~ly~~~~~~~~~~~~~~-~~aE 232 (478)
T 3g79_A 167 GLKAGEDF-ALAHAPERVMVGRLLKNIRE---------HDRIV-GGI--DEASTKRAVELYSPVLTVGQVIPMSA-TAAE 232 (478)
T ss_dssp CCCBTTTB-EEEECCCCCCTTSHHHHHHH---------SCEEE-EES--SHHHHHHHHHHHGGGCSSCCEEEEEH-HHHH
T ss_pred CCCcCCce-eEEeCCccCCccchhhhhcC---------CcEEE-EeC--CHHHHHHHHHHHhhhccCCeEEeCCH-HHHH
Confidence 11112232 3456673 34443322221 12322 232 456778999999999 6542222211 1111
Q ss_pred hhccccchhhhchHHHHHHHHHHHHHHcCCCHHHHHH
Q 014834 300 SDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYK 336 (417)
Q Consensus 300 ~dl~ge~t~L~G~~pA~iea~~d~~v~~Gl~~e~A~~ 336 (417)
.-.+-+.+ +...--+++--+...+.+.|++.++.++
T Consensus 233 ~~Kl~~N~-~~a~~Ia~~nE~~~l~e~~GiD~~~v~~ 268 (478)
T 3g79_A 233 VTKTAENT-FRDLQIAAINQLALYCEAMGINVYDVRT 268 (478)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 11122222 1222233555567777888999887666
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.5e-07 Score=97.13 Aligned_cols=202 Identities=11% Similarity=0.095 Sum_probs=116.0
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhh-------------
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET------------- 175 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea------------- 175 (417)
.| .|..|||+|.||.++|.+|.+. |++|++++++.++ .+... .|.... ....++|+
T Consensus 10 ~~-~~~~ViGlGyvGlp~A~~La~~------G~~V~~~D~~~~k-v~~L~-~g~~pi--~epgl~~ll~~~~~~g~l~~t 78 (431)
T 3ojo_A 10 HG-SKLTVVGLGYIGLPTSIMFAKH------GVDVLGVDINQQT-IDKLQ-NGQISI--EEPGLQEVYEEVLSSGKLKVS 78 (431)
T ss_dssp ---CEEEEECCSTTHHHHHHHHHHT------TCEEEEECSCHHH-HHHHH-TTCCSS--CCTTHHHHHHHHHHTTCEEEE
T ss_pred cC-CccEEEeeCHHHHHHHHHHHHC------CCEEEEEECCHHH-HHHHH-CCCCCc--CCCCHHHHHHhhcccCceEEe
Confidence 35 8999999999999999999999 9999877776433 33322 232110 00011111
Q ss_pred --cCcCCEEEEccCCch------------HHHHHHHHHhcCCCCcEEEEecCchhhhhh-------h-cccCCCCCccEE
Q 014834 176 --ISGSDLVLLLISDAA------------QADNYEKIFSCMKPNSILGLSHGFLLGHLQ-------S-IGLDFPKNIGVI 233 (417)
Q Consensus 176 --~~~ADIViLavpd~~------------~~~Vl~eI~~~lk~gaiLi~a~G~~i~~~~-------~-~~i~~~~dv~VI 233 (417)
+++||+||+|||... ...+.+.|.+++++|++|++.+++.....+ + .+.....++ .+
T Consensus 79 td~~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i~e~~g~~~~~d~-~v 157 (431)
T 3ojo_A 79 TTPEASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPVIENLGFTIGEDI-YL 157 (431)
T ss_dssp SSCCCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHHHHTTTCCBTTTE-EE
T ss_pred CchhhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHHHHHcCCCcCCCe-EE
Confidence 458999999999654 345567899999999999988876432111 1 111112232 34
Q ss_pred Eecc--CCCchhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhc
Q 014834 234 AVCP--KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLG 311 (417)
Q Consensus 234 ~v~P--ntpg~~vr~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G 311 (417)
.-.| -.||..+..... .+.++. .. +.++.+.+..++..++...++.++.. .-+.-.+-+.+. ..
T Consensus 158 ~~~Pe~~~~G~A~~~~~~---------p~~Iv~-G~--~~~~~~~~~~ly~~~~~~~~~~~~~~-~AE~~Kl~~N~~-~a 223 (431)
T 3ojo_A 158 VHCPERVLPGKILEELVH---------NNRIIG-GV--TKACIEAGKRVYRTFVQGEMIETDAR-TAEMSKLMENTY-RD 223 (431)
T ss_dssp EECCCCCCTTSHHHHHHH---------SCEEEE-ES--SHHHHHHHHHHHTTTCCSCEEEEEHH-HHHHHHHHHHHH-HH
T ss_pred EECCCcCCCcchhhcccC---------CCEEEE-eC--CHHHHHHHHHHHHHHhCCcEEeCCHH-HHHHHHHHHHHH-HH
Confidence 5566 233443222211 223222 33 56889999999999986433222211 111111222221 12
Q ss_pred hHHHHHHHHHHHHHHcCCCHHHHHH
Q 014834 312 AVHGIVESLFRRFTENGMSEDLAYK 336 (417)
Q Consensus 312 ~~pA~iea~~d~~v~~Gl~~e~A~~ 336 (417)
.--+++--+...+.+.|++.++..+
T Consensus 224 ~~Ia~~nE~~~l~e~~GiD~~~v~~ 248 (431)
T 3ojo_A 224 VNIALANELTKICNNLNINVLDVIE 248 (431)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 2233555566777888888877665
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.8e-08 Score=104.91 Aligned_cols=95 Identities=16% Similarity=0.081 Sum_probs=74.7
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcC--------------------ceecCCCc
Q 014834 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG--------------------FTEENGTL 169 (417)
Q Consensus 110 gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G--------------------~~~~~~~~ 169 (417)
|-+||+|||+|.||.++|..|.+. |++|+++++.. ...+...+.+ +.. +
T Consensus 7 ~~~~I~VIG~G~vG~~lA~~la~~------G~~V~~~d~~~-~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~----t 75 (478)
T 2y0c_A 7 GSMNLTIIGSGSVGLVTGACLADI------GHDVFCLDVDQ-AKIDILNNGGVPIHEPGLKEVIARNRSAGRLRF----S 75 (478)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCH-HHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE----E
T ss_pred CCceEEEECcCHHHHHHHHHHHhC------CCEEEEEECCH-HHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEE----E
Confidence 348999999999999999999999 99988776653 3334333321 111 3
Q ss_pred CCHHhhcCcCCEEEEccCC----------chHHHHHHHHHhcCCCCcEEEEecCch
Q 014834 170 GDIYETISGSDLVLLLISD----------AAQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 170 ~s~~Ea~~~ADIViLavpd----------~~~~~Vl~eI~~~lk~gaiLi~a~G~~ 215 (417)
.++++++++||+||+++|. ....+++++|.++++++++|+..+++.
T Consensus 76 td~~~a~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~STv~ 131 (478)
T 2y0c_A 76 TDIEAAVAHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKSTVP 131 (478)
T ss_dssp CCHHHHHHHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCC
T ss_pred CCHHHHhhcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeCCcC
Confidence 5677889999999999997 677789999999999999988877763
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.7e-08 Score=97.20 Aligned_cols=110 Identities=21% Similarity=0.161 Sum_probs=78.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecC-CC-----cCCHHhhcCcCCEEEEc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN-GT-----LGDIYETISGSDLVLLL 185 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~-~~-----~~s~~Ea~~~ADIViLa 185 (417)
+||+|||+|+||.++|..|. + |.+|.+..|... ..+..++.|+.... +. .....+++..+|+||++
T Consensus 3 mkI~IiGaGa~G~~~a~~L~-~------g~~V~~~~r~~~-~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D~vila 74 (307)
T 3ego_A 3 LKIGIIGGGSVGLLCAYYLS-L------YHDVTVVTRRQE-QAAAIQSEGIRLYKGGEEFRADCSADTSINSDFDLLVVT 74 (307)
T ss_dssp CEEEEECCSHHHHHHHHHHH-T------TSEEEEECSCHH-HHHHHHHHCEEEEETTEEEEECCEEESSCCSCCSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHh-c------CCceEEEECCHH-HHHHHHhCCceEecCCCeecccccccccccCCCCEEEEE
Confidence 79999999999999999999 8 999988777643 34444556876410 00 00013467889999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEecCchhh-hhhhcccCCCCCccEEE
Q 014834 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFLLG-HLQSIGLDFPKNIGVIA 234 (417)
Q Consensus 186 vpd~~~~~Vl~eI~~~lk~gaiLi~a~G~~i~-~~~~~~i~~~~dv~VI~ 234 (417)
||+....++++.+.+. .++++|++..|+... .+.+ .+|.+ +++.
T Consensus 75 vK~~~~~~~l~~l~~~-~~~~ivs~~nGi~~~e~l~~---~~~~~-~vl~ 119 (307)
T 3ego_A 75 VKQHQLQSVFSSLERI-GKTNILFLQNGMGHIHDLKD---WHVGH-SIYV 119 (307)
T ss_dssp CCGGGHHHHHHHTTSS-CCCEEEECCSSSHHHHHHHT---CCCSC-EEEE
T ss_pred eCHHHHHHHHHHhhcC-CCCeEEEecCCccHHHHHHH---hCCCC-cEEE
Confidence 9999999999988875 566666788999864 4443 34543 4443
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.77 E-value=3.8e-09 Score=107.34 Aligned_cols=90 Identities=16% Similarity=0.162 Sum_probs=70.9
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
..+.| ++|||||+|+||.++|+.|+.. |++|+++++... . ...|.. ..+++|++++||+|+++
T Consensus 112 ~~l~g-~tvGIIGlG~IG~~vA~~l~~~------G~~V~~~d~~~~----~-~~~g~~-----~~~l~ell~~aDvV~l~ 174 (380)
T 2o4c_A 112 ADLAE-RTYGVVGAGQVGGRLVEVLRGL------GWKVLVCDPPRQ----A-REPDGE-----FVSLERLLAEADVISLH 174 (380)
T ss_dssp CCGGG-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECHHHH----H-HSTTSC-----CCCHHHHHHHCSEEEEC
T ss_pred cccCC-CEEEEEeCCHHHHHHHHHHHHC------CCEEEEEcCChh----h-hccCcc-----cCCHHHHHHhCCEEEEe
Confidence 46889 9999999999999999999988 999877654311 1 123433 46899999999999999
Q ss_pred cCCchH-----HHHHH-HHHhcCCCCcEEEEec
Q 014834 186 ISDAAQ-----ADNYE-KIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~~~-----~~Vl~-eI~~~lk~gaiLi~a~ 212 (417)
+|.... ..++. ++.+.||+|++|+.++
T Consensus 175 ~Plt~~g~~~T~~li~~~~l~~mk~gailIN~s 207 (380)
T 2o4c_A 175 TPLNRDGEHPTRHLLDEPRLAALRPGTWLVNAS 207 (380)
T ss_dssp CCCCSSSSSCCTTSBCHHHHHTSCTTEEEEECS
T ss_pred ccCccccccchhhhcCHHHHhhCCCCcEEEECC
Confidence 997664 34553 6788999999988554
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=98.75 E-value=4.7e-09 Score=101.20 Aligned_cols=96 Identities=15% Similarity=0.091 Sum_probs=72.8
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
.++| ++|+|||+|.||.+++..|.+. |.+|.+++|+.++..+.+.+.|+.. ..+..++++++|+||+++
T Consensus 126 ~~~~-~~v~iiGaG~~g~aia~~L~~~------g~~V~v~~r~~~~~~~l~~~~g~~~----~~~~~~~~~~aDiVi~at 194 (275)
T 2hk9_A 126 EVKE-KSILVLGAGGASRAVIYALVKE------GAKVFLWNRTKEKAIKLAQKFPLEV----VNSPEEVIDKVQVIVNTT 194 (275)
T ss_dssp TGGG-SEEEEECCSHHHHHHHHHHHHH------TCEEEEECSSHHHHHHHTTTSCEEE----CSCGGGTGGGCSEEEECS
T ss_pred CcCC-CEEEEECchHHHHHHHHHHHHc------CCEEEEEECCHHHHHHHHHHcCCee----ehhHHhhhcCCCEEEEeC
Confidence 4678 9999999999999999999998 8888888887555455555567653 347788899999999999
Q ss_pred CCchHHHHHHHH-HhcCCCCcEEEEecC
Q 014834 187 SDAAQADNYEKI-FSCMKPNSILGLSHG 213 (417)
Q Consensus 187 pd~~~~~Vl~eI-~~~lk~gaiLi~a~G 213 (417)
|+....++...+ .+.++++++|++...
T Consensus 195 p~~~~~~~~~~i~~~~l~~g~~viDv~~ 222 (275)
T 2hk9_A 195 SVGLKDEDPEIFNYDLIKKDHVVVDIIY 222 (275)
T ss_dssp STTSSTTCCCSSCGGGCCTTSEEEESSS
T ss_pred CCCCCCCCCCCCCHHHcCCCCEEEEcCC
Confidence 988653211112 356788888876554
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=98.74 E-value=3.7e-09 Score=107.51 Aligned_cols=151 Identities=17% Similarity=0.140 Sum_probs=96.6
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
..+.| ++|||||+|+||.++|+.|+.. |++|+++++.. . ....+.. ..+++|++++||+|+++
T Consensus 115 ~~l~g-ktvGIIGlG~IG~~vA~~l~a~------G~~V~~~d~~~----~-~~~~~~~-----~~sl~ell~~aDiV~l~ 177 (381)
T 3oet_A 115 FSLRD-RTIGIVGVGNVGSRLQTRLEAL------GIRTLLCDPPR----A-ARGDEGD-----FRTLDELVQEADVLTFH 177 (381)
T ss_dssp CCGGG-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECHHH----H-HTTCCSC-----BCCHHHHHHHCSEEEEC
T ss_pred CccCC-CEEEEEeECHHHHHHHHHHHHC------CCEEEEECCCh----H-HhccCcc-----cCCHHHHHhhCCEEEEc
Confidence 46889 9999999999999999999998 99988775521 1 1112322 56899999999999999
Q ss_pred cCCchH-----HHHH-HHHHhcCCCCcEEEEec-Cchh------hhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcc
Q 014834 186 ISDAAQ-----ADNY-EKIFSCMKPNSILGLSH-GFLL------GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (417)
Q Consensus 186 vpd~~~-----~~Vl-~eI~~~lk~gaiLi~a~-G~~i------~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~ 252 (417)
+|.... ..++ .+.+..||+|++|+.++ |-.+ ..+++ +-.....+||.--.|.-+. .++.
T Consensus 178 ~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~-g~i~gA~LDV~e~EP~~~~----~L~~--- 249 (381)
T 3oet_A 178 TPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNA-GQPLSVVLDVWEGEPDLNV----ALLE--- 249 (381)
T ss_dssp CCCCCSSTTCCTTSBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHT-TCCEEEEESCCTTTTSCCH----HHHH---
T ss_pred CcCCccccccchhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHh-CCCeEEEeeccccCCCCcc----hhhh---
Confidence 996654 3445 35778899999999665 4321 12222 1111123456656664322 2343
Q ss_pred cccCCCceEEEeecC-CCCHHHHHH-----HHHHHHHhCCC
Q 014834 253 EINGAGINSSFAVHQ-DVDGRATNV-----ALGWSVALGSP 287 (417)
Q Consensus 253 ~~~G~Gv~~liav~~-dvsgea~e~-----a~~L~~alG~~ 287 (417)
.+.+++||- ..|.++.+. +..+..-++..
T Consensus 250 ------~~~i~TPHiag~t~e~~~~~~~~~~~~l~~~l~~~ 284 (381)
T 3oet_A 250 ------AVDIGTSHIAGYTLEGKARGTTQVFEAYSAFIGRE 284 (381)
T ss_dssp ------HSSEECSSCTTCCHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ------CCEEECCccCcCcHHHHHHHHHHHHHHHHHHHcCC
Confidence 224688886 344454443 34555666654
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.72 E-value=2e-08 Score=100.13 Aligned_cols=104 Identities=19% Similarity=0.113 Sum_probs=78.8
Q ss_pred hccccccccc--chhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCC
Q 014834 94 VRGGRDLFKL--LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (417)
Q Consensus 94 vr~g~~~f~~--~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s 171 (417)
++.|+|.... ....+.| ++|||||+|.+|..+|+.++.. |++|+++++... +...+.++. ..+
T Consensus 123 ~~~~~~~~~~~~~~~~l~g-~tvGIiG~G~IG~~va~~~~~f------g~~v~~~d~~~~---~~~~~~~~~-----~~~ 187 (334)
T 3kb6_A 123 VKKLNFSQDSEILARELNR-LTLGVIGTGRIGSRVAMYGLAF------GMKVLCYDVVKR---EDLKEKGCV-----YTS 187 (334)
T ss_dssp HHTTCCCCCGGGCBCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCC---HHHHHTTCE-----ECC
T ss_pred ccccccccccccccceecC-cEEEEECcchHHHHHHHhhccc------CceeeecCCccc---hhhhhcCce-----ecC
Confidence 4555554322 2478999 9999999999999999999988 999987665432 233455666 468
Q ss_pred HHhhcCcCCEEEEccCCchHH-HHHH-HHHhcCCCCcEEEEec
Q 014834 172 IYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSH 212 (417)
Q Consensus 172 ~~Ea~~~ADIViLavpd~~~~-~Vl~-eI~~~lk~gaiLi~a~ 212 (417)
.+|++++||+|++++|-.... .++. +.+..||+|++|+-++
T Consensus 188 l~ell~~sDivslh~Plt~~T~~li~~~~l~~mk~~a~lIN~a 230 (334)
T 3kb6_A 188 LDELLKESDVISLHVPYTKETHHMINEERISLMKDGVYLINTA 230 (334)
T ss_dssp HHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECS
T ss_pred HHHHHhhCCEEEEcCCCChhhccCcCHHHHhhcCCCeEEEecC
Confidence 999999999999999976553 4554 5778899999988443
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=98.71 E-value=2.6e-08 Score=87.27 Aligned_cols=110 Identities=7% Similarity=-0.028 Sum_probs=79.6
Q ss_pred CEEEEEcc----cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccC
Q 014834 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~----G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavp 187 (417)
++|+|||+ |+||..++++|++. |++|+..+..... -.|... ..+++|+.+..|++++++|
T Consensus 15 ~~IavIGaS~~~g~~G~~~~~~L~~~------G~~V~~vnp~~~~------i~G~~~----~~s~~el~~~vDlvii~vp 78 (138)
T 1y81_A 15 RKIALVGASKNPAKYGNIILKDLLSK------GFEVLPVNPNYDE------IEGLKC----YRSVRELPKDVDVIVFVVP 78 (138)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHT------TCEEEEECTTCSE------ETTEEC----BSSGGGSCTTCCEEEECSC
T ss_pred CeEEEEeecCCCCCHHHHHHHHHHHC------CCEEEEeCCCCCe------ECCeee----cCCHHHhCCCCCEEEEEeC
Confidence 89999999 99999999999999 9986554443211 157764 5689999999999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchh
Q 014834 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPS 243 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~ 243 (417)
+....++++++.. ...+.+|++++++.-...+. .-..++. .+.||+++-.
T Consensus 79 ~~~v~~v~~~~~~-~g~~~i~~~~~~~~~~l~~~---a~~~Gi~--~igpnc~g~~ 128 (138)
T 1y81_A 79 PKVGLQVAKEAVE-AGFKKLWFQPGAESEEIRRF---LEKAGVE--YSFGRCIMVE 128 (138)
T ss_dssp HHHHHHHHHHHHH-TTCCEEEECTTSCCHHHHHH---HHHHTCE--EECSCCHHHH
T ss_pred HHHHHHHHHHHHH-cCCCEEEEcCccHHHHHHHH---HHHCCCE--EEcCCcceEE
Confidence 9888999988766 45566777777764221111 0012344 4569998866
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.71 E-value=4.1e-08 Score=95.27 Aligned_cols=94 Identities=17% Similarity=0.250 Sum_probs=71.7
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
..+.| ++|+|||+|.||.++++.|+.. |.+|+++++...+ .+.+.+.|+... ...+.+++++++|+|+++
T Consensus 151 ~~l~g-~~v~IiG~G~iG~~~a~~l~~~------G~~V~~~dr~~~~-~~~~~~~g~~~~--~~~~l~~~l~~aDvVi~~ 220 (293)
T 3d4o_A 151 FTIHG-ANVAVLGLGRVGMSVARKFAAL------GAKVKVGARESDL-LARIAEMGMEPF--HISKAAQELRDVDVCINT 220 (293)
T ss_dssp SCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESSHHH-HHHHHHTTSEEE--EGGGHHHHTTTCSEEEEC
T ss_pred CCCCC-CEEEEEeeCHHHHHHHHHHHhC------CCEEEEEECCHHH-HHHHHHCCCeec--ChhhHHHHhcCCCEEEEC
Confidence 46788 9999999999999999999988 9999888876433 344456676530 014678889999999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
+|+....+ +....|+++.+|+..+
T Consensus 221 ~p~~~i~~---~~l~~mk~~~~lin~a 244 (293)
T 3d4o_A 221 IPALVVTA---NVLAEMPSHTFVIDLA 244 (293)
T ss_dssp CSSCCBCH---HHHHHSCTTCEEEECS
T ss_pred CChHHhCH---HHHHhcCCCCEEEEec
Confidence 99854422 3455789999988665
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.69 E-value=5.3e-08 Score=94.71 Aligned_cols=94 Identities=21% Similarity=0.346 Sum_probs=72.0
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
..+.| ++|+|||+|.||.++++.|+.. |.+|+++++...+ .+.+.+.|+... ...+.+++++++|+|+++
T Consensus 153 ~~l~g-~~v~IiG~G~iG~~~a~~l~~~------G~~V~~~d~~~~~-~~~~~~~g~~~~--~~~~l~~~l~~aDvVi~~ 222 (300)
T 2rir_A 153 YTIHG-SQVAVLGLGRTGMTIARTFAAL------GANVKVGARSSAH-LARITEMGLVPF--HTDELKEHVKDIDICINT 222 (300)
T ss_dssp SCSTT-SEEEEECCSHHHHHHHHHHHHT------TCEEEEEESSHHH-HHHHHHTTCEEE--EGGGHHHHSTTCSEEEEC
T ss_pred CCCCC-CEEEEEcccHHHHHHHHHHHHC------CCEEEEEECCHHH-HHHHHHCCCeEE--chhhHHHHhhCCCEEEEC
Confidence 57889 9999999999999999999988 9999888876433 333445676420 024688899999999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
+|+.... ++....|++|.+|++.+
T Consensus 223 ~p~~~i~---~~~~~~mk~g~~lin~a 246 (300)
T 2rir_A 223 IPSMILN---QTVLSSMTPKTLILDLA 246 (300)
T ss_dssp CSSCCBC---HHHHTTSCTTCEEEECS
T ss_pred CChhhhC---HHHHHhCCCCCEEEEEe
Confidence 9985432 23557799999988654
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=98.69 E-value=1.3e-08 Score=106.41 Aligned_cols=103 Identities=17% Similarity=0.191 Sum_probs=77.6
Q ss_pred cccccccccchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHh
Q 014834 95 RGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE 174 (417)
Q Consensus 95 r~g~~~f~~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~E 174 (417)
++| |....+ ..+.| ++|+|||+|.||.++|+.|+.. |.+|+++++... ....+...|+. ..++++
T Consensus 244 ~~g-w~r~~~-~~l~G-ktVgIIG~G~IG~~vA~~l~~~------G~~Viv~d~~~~-~~~~a~~~g~~-----~~~l~e 308 (479)
T 1v8b_A 244 PDG-LMRATD-FLISG-KIVVICGYGDVGKGCASSMKGL------GARVYITEIDPI-CAIQAVMEGFN-----VVTLDE 308 (479)
T ss_dssp HHH-HHHHHC-CCCTT-SEEEEECCSHHHHHHHHHHHHH------TCEEEEECSCHH-HHHHHHTTTCE-----ECCHHH
T ss_pred hhh-hhhccc-cccCC-CEEEEEeeCHHHHHHHHHHHhC------cCEEEEEeCChh-hHHHHHHcCCE-----ecCHHH
Confidence 445 654333 57899 9999999999999999999998 999987776532 22345667886 468999
Q ss_pred hcCcCCEEEEccCCchHHHHH-HHHHhcCCCCcEEEEecCch
Q 014834 175 TISGSDLVLLLISDAAQADNY-EKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 175 a~~~ADIViLavpd~~~~~Vl-~eI~~~lk~gaiLi~a~G~~ 215 (417)
++++||+|++++... .++ .+.++.||+|++|+.++-..
T Consensus 309 ll~~aDiVi~~~~t~---~lI~~~~l~~MK~gailiNvgrg~ 347 (479)
T 1v8b_A 309 IVDKGDFFITCTGNV---DVIKLEHLLKMKNNAVVGNIGHFD 347 (479)
T ss_dssp HTTTCSEEEECCSSS---SSBCHHHHTTCCTTCEEEECSSTT
T ss_pred HHhcCCEEEECCChh---hhcCHHHHhhcCCCcEEEEeCCCC
Confidence 999999999997432 233 35677899999999665443
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.67 E-value=2e-07 Score=78.34 Aligned_cols=97 Identities=12% Similarity=0.025 Sum_probs=66.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHH----hhcCcCCEEEEccC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY----ETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~----Ea~~~ADIViLavp 187 (417)
++|.|||+|.+|..+++.|.+. |++|++.+++.++........|+....+...+.+ ..++++|+|++++|
T Consensus 5 m~i~IiG~G~iG~~~a~~L~~~------g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~ 78 (140)
T 1lss_A 5 MYIIIAGIGRVGYTLAKSLSEK------GHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTG 78 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCS
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeC
Confidence 7899999999999999999998 9998887775443333333446532111122322 22678999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
+......+..+.+.+.++.+|+.+.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~ii~~~~~~ 105 (140)
T 1lss_A 79 KEEVNLMSSLLAKSYGINKTIARISEI 105 (140)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEEECSST
T ss_pred CchHHHHHHHHHHHcCCCEEEEEecCH
Confidence 876655555666667777777655554
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=1.3e-08 Score=106.65 Aligned_cols=99 Identities=18% Similarity=0.125 Sum_probs=75.4
Q ss_pred cccccchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCc
Q 014834 99 DLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG 178 (417)
Q Consensus 99 ~~f~~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ 178 (417)
|....+ ..+.| ++|+|||+|.||.++|+.|+.. |.+|+++++...+ ...+...|+. ..+++|++++
T Consensus 267 w~~~~g-~~L~G-ktVgIIG~G~IG~~vA~~l~~~------G~~V~v~d~~~~~-~~~a~~~G~~-----~~~l~ell~~ 332 (494)
T 3d64_A 267 IKRATD-VMIAG-KIAVVAGYGDVGKGCAQSLRGL------GATVWVTEIDPIC-ALQAAMEGYR-----VVTMEYAADK 332 (494)
T ss_dssp HHHHHC-CCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECSCHHH-HHHHHTTTCE-----ECCHHHHTTT
T ss_pred hhhccc-cccCC-CEEEEEccCHHHHHHHHHHHHC------CCEEEEEeCChHh-HHHHHHcCCE-----eCCHHHHHhc
Confidence 644333 57899 9999999999999999999988 9999887765332 2245566876 4589999999
Q ss_pred CCEEEEccCCchHHHHH-HHHHhcCCCCcEEEEecCc
Q 014834 179 SDLVLLLISDAAQADNY-EKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 179 ADIViLavpd~~~~~Vl-~eI~~~lk~gaiLi~a~G~ 214 (417)
||+|++++... .++ .+.++.||+|++|+.++-.
T Consensus 333 aDiVi~~~~t~---~lI~~~~l~~MK~gAilINvgrg 366 (494)
T 3d64_A 333 ADIFVTATGNY---HVINHDHMKAMRHNAIVCNIGHF 366 (494)
T ss_dssp CSEEEECSSSS---CSBCHHHHHHCCTTEEEEECSSS
T ss_pred CCEEEECCCcc---cccCHHHHhhCCCCcEEEEcCCC
Confidence 99999998432 233 3567789999999955543
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.64 E-value=3.1e-07 Score=93.71 Aligned_cols=97 Identities=14% Similarity=0.162 Sum_probs=71.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--------EEEEEecCChh----hHHHHHHc--------CceecC--CCc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--------VVKVGLRKGSR----SFAEARAA--------GFTEEN--GTL 169 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--------~ViVg~r~~s~----s~~~A~~~--------G~~~~~--~~~ 169 (417)
.||+|||.|+.|.|+|.-|.++ |. +|.+|.|+.+. ..+.-... |+...+ ...
T Consensus 35 ~KI~ViGaGsWGTALA~~la~n------g~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t 108 (391)
T 4fgw_A 35 FKVTVIGSGNWGTTIAKVVAEN------CKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVAN 108 (391)
T ss_dssp EEEEEECCSHHHHHHHHHHHHH------HHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEE
T ss_pred CeEEEECcCHHHHHHHHHHHHc------CCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEe
Confidence 4899999999999999999987 53 48888765331 11111111 111100 014
Q ss_pred CCHHhhcCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEE-EecCc
Q 014834 170 GDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGF 214 (417)
Q Consensus 170 ~s~~Ea~~~ADIViLavpd~~~~~Vl~eI~~~lk~gaiLi-~a~G~ 214 (417)
.|+++++++||+||+++|.+...++++++.++++++..|+ .+-|+
T Consensus 109 ~dl~~al~~ad~ii~avPs~~~r~~l~~l~~~~~~~~~iv~~~KGi 154 (391)
T 4fgw_A 109 PDLIDSVKDVDIIVFNIPHQFLPRICSQLKGHVDSHVRAISCLKGF 154 (391)
T ss_dssp SCHHHHHTTCSEEEECSCGGGHHHHHHHHTTTSCTTCEEEECCCSC
T ss_pred CCHHHHHhcCCEEEEECChhhhHHHHHHhccccCCCceeEEecccc
Confidence 5789999999999999999999999999999999998655 55676
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.6e-08 Score=87.56 Aligned_cols=89 Identities=20% Similarity=0.165 Sum_probs=68.5
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCc
Q 014834 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (417)
Q Consensus 110 gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~ 189 (417)
| ++|+|||+|.||.++++.|+.. |++|.+++|+.++..+.+++.|.... ...+..++++++|+||.++|..
T Consensus 21 ~-~~v~iiG~G~iG~~~a~~l~~~------g~~v~v~~r~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~Divi~at~~~ 91 (144)
T 3oj0_A 21 G-NKILLVGNGMLASEIAPYFSYP------QYKVTVAGRNIDHVRAFAEKYEYEYV--LINDIDSLIKNNDVIITATSSK 91 (144)
T ss_dssp C-CEEEEECCSHHHHHHGGGCCTT------TCEEEEEESCHHHHHHHHHHHTCEEE--ECSCHHHHHHTCSEEEECSCCS
T ss_pred C-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCCHHHHHHHHHHhCCceE--eecCHHHHhcCCCEEEEeCCCC
Confidence 7 9999999999999999999988 88888888876666666777775420 1457889999999999999976
Q ss_pred hHHHHHHHHHhcCCCCcEEEEe
Q 014834 190 AQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 190 ~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
.. ++. ...+++|.++++.
T Consensus 92 ~~--~~~--~~~l~~g~~vid~ 109 (144)
T 3oj0_A 92 TP--IVE--ERSLMPGKLFIDL 109 (144)
T ss_dssp SC--SBC--GGGCCTTCEEEEC
T ss_pred Cc--Eee--HHHcCCCCEEEEc
Confidence 32 111 2557788887754
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.63 E-value=4.1e-08 Score=96.44 Aligned_cols=91 Identities=12% Similarity=0.146 Sum_probs=69.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcC--ceecCCCcCCHHhhcCcCCEEEEccCC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG--FTEENGTLGDIYETISGSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G--~~~~~~~~~s~~Ea~~~ADIViLavpd 188 (417)
++|+|||+|.||.+++++|.+. .|+ +|.+++|+.++..+.+.+.+ +.. +.+++|+++++|+|+++||.
T Consensus 136 ~~igiIG~G~~g~~~a~~l~~~-----~g~~~V~v~dr~~~~~~~l~~~~~~~~~~----~~~~~e~v~~aDiVi~atp~ 206 (312)
T 2i99_A 136 EVLCILGAGVQAYSHYEIFTEQ-----FSFKEVRIWNRTKENAEKFADTVQGEVRV----CSSVQEAVAGADVIITVTLA 206 (312)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-----CCCSEEEEECSSHHHHHHHHHHSSSCCEE----CSSHHHHHTTCSEEEECCCC
T ss_pred cEEEEECCcHHHHHHHHHHHHh-----CCCcEEEEEcCCHHHHHHHHHHhhCCeEE----eCCHHHHHhcCCEEEEEeCC
Confidence 8999999999999999999764 155 78888887666566666666 554 56899999999999999995
Q ss_pred chHHHHHHHHHhcCCCCcEEEEecCch
Q 014834 189 AAQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 189 ~~~~~Vl~eI~~~lk~gaiLi~a~G~~ 215 (417)
. ..++.. +.+++|++|++.+++.
T Consensus 207 ~--~~v~~~--~~l~~g~~vi~~g~~~ 229 (312)
T 2i99_A 207 T--EPILFG--EWVKPGAHINAVGASR 229 (312)
T ss_dssp S--SCCBCG--GGSCTTCEEEECCCCS
T ss_pred C--CcccCH--HHcCCCcEEEeCCCCC
Confidence 3 223322 5788999888766553
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=98.59 E-value=3.5e-09 Score=102.53 Aligned_cols=97 Identities=12% Similarity=0.138 Sum_probs=71.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhc-CcCCEEEEccCCch
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~-~~ADIViLavpd~~ 190 (417)
+||+|||+|+||.++|..|.++ |.+|.++.|..+. .+.....|... .....+..+.+ +.+|+||++||+..
T Consensus 3 mkI~iiGaGa~G~~~a~~L~~~------g~~V~~~~r~~~~-~~~~~~~g~~~-~~~~~~~~~~~~~~~D~vilavk~~~ 74 (294)
T 3g17_A 3 LSVAIIGPGAVGTTIAYELQQS------LPHTTLIGRHAKT-ITYYTVPHAPA-QDIVVKGYEDVTNTFDVIIIAVKTHQ 74 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHHHH------CTTCEEEESSCEE-EEEESSTTSCC-EEEEEEEGGGCCSCEEEEEECSCGGG
T ss_pred cEEEEECCCHHHHHHHHHHHHC------CCeEEEEEeccCc-EEEEecCCeec-cceecCchHhcCCCCCEEEEeCCccC
Confidence 7999999999999999999999 9888888876432 11112234211 00012344554 88999999999999
Q ss_pred HHHHHHHHHhcCCCCcE-EEEecCchh
Q 014834 191 QADNYEKIFSCMKPNSI-LGLSHGFLL 216 (417)
Q Consensus 191 ~~~Vl~eI~~~lk~gai-Li~a~G~~i 216 (417)
..++++++.++++++++ |++..|+..
T Consensus 75 ~~~~l~~l~~~l~~~~~iv~~~nGi~~ 101 (294)
T 3g17_A 75 LDAVIPHLTYLAHEDTLIILAQNGYGQ 101 (294)
T ss_dssp HHHHGGGHHHHEEEEEEEEECCSSCCC
T ss_pred HHHHHHHHHHhhCCCCEEEEeccCccc
Confidence 99999999999988875 457889865
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=98.58 E-value=6.7e-08 Score=85.14 Aligned_cols=111 Identities=10% Similarity=-0.015 Sum_probs=78.0
Q ss_pred CEEEEEcc----cchHHHHHHHHHhhhhhhcCCcEEEEEecCCh-hhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~----G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s-~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
++|+|||+ |+||..++++|++. |++|+..+.... .. -.|... ..+++|+....|++++++
T Consensus 14 ~~IavIGas~~~g~~G~~~~~~L~~~------G~~v~~vnp~~~g~~-----i~G~~~----~~sl~el~~~~Dlvii~v 78 (145)
T 2duw_A 14 RTIALVGASDKPDRPSYRVMKYLLDQ------GYHVIPVSPKVAGKT-----LLGQQG----YATLADVPEKVDMVDVFR 78 (145)
T ss_dssp CCEEEESCCSCTTSHHHHHHHHHHHH------TCCEEEECSSSTTSE-----ETTEEC----CSSTTTCSSCCSEEECCS
T ss_pred CEEEEECcCCCCCChHHHHHHHHHHC------CCEEEEeCCcccccc-----cCCeec----cCCHHHcCCCCCEEEEEe
Confidence 89999999 89999999999999 998655444320 11 147764 567888888999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchh
Q 014834 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPS 243 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~ 243 (417)
|+....++++++.. ...+.+|++.+.+.-...+. .-..+ +-.+.||+++-.
T Consensus 79 p~~~v~~v~~~~~~-~g~~~i~i~~~~~~~~l~~~---a~~~G--i~~igpnc~g~~ 129 (145)
T 2duw_A 79 NSEAAWGVAQEAIA-IGAKTLWLQLGVINEQAAVL---AREAG--LSVVMDRCPAIE 129 (145)
T ss_dssp CSTHHHHHHHHHHH-HTCCEEECCTTCCCHHHHHH---HHTTT--CEEECSCCHHHH
T ss_pred CHHHHHHHHHHHHH-cCCCEEEEcCChHHHHHHHH---HHHcC--CEEEcCCeeeEE
Confidence 99999999988765 44556666665553211111 11223 344569998866
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=1e-07 Score=98.47 Aligned_cols=91 Identities=16% Similarity=0.192 Sum_probs=72.2
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
..+.| ++|+|||+|.+|.++|+.|+.. |.+|++.++. ......+...|+. ..+++|++++||+|+++
T Consensus 207 ~~L~G-ktVgIiG~G~IG~~vA~~Lka~------Ga~Viv~D~~-p~~a~~A~~~G~~-----~~sL~eal~~ADVVilt 273 (436)
T 3h9u_A 207 VMIAG-KTACVCGYGDVGKGCAAALRGF------GARVVVTEVD-PINALQAAMEGYQ-----VLLVEDVVEEAHIFVTT 273 (436)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTCE-----ECCHHHHTTTCSEEEEC
T ss_pred CcccC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEECCC-hhhhHHHHHhCCe-----ecCHHHHHhhCCEEEEC
Confidence 56788 9999999999999999999998 9998877664 3334556678887 46899999999999987
Q ss_pred cCCchHHHHHH-HHHhcCCCCcEEEEec
Q 014834 186 ISDAAQADNYE-KIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~~~~~Vl~-eI~~~lk~gaiLi~a~ 212 (417)
...... +. +.+..||+|++|+.++
T Consensus 274 ~gt~~i---I~~e~l~~MK~gAIVINvg 298 (436)
T 3h9u_A 274 TGNDDI---ITSEHFPRMRDDAIVCNIG 298 (436)
T ss_dssp SSCSCS---BCTTTGGGCCTTEEEEECS
T ss_pred CCCcCc---cCHHHHhhcCCCcEEEEeC
Confidence 654332 32 5677899999988554
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=4.9e-08 Score=92.99 Aligned_cols=90 Identities=19% Similarity=0.138 Sum_probs=69.0
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
.++| +|+|||+|.||.+++.+|.+. |.+|.+++|+.++..+.+.+.|.. ..+.+++ +++|+|++++
T Consensus 114 ~l~~--~v~iiG~G~~g~~~a~~l~~~------g~~v~v~~r~~~~~~~l~~~~~~~-----~~~~~~~-~~~Divi~~t 179 (263)
T 2d5c_A 114 PLKG--PALVLGAGGAGRAVAFALREA------GLEVWVWNRTPQRALALAEEFGLR-----AVPLEKA-REARLLVNAT 179 (263)
T ss_dssp CCCS--CEEEECCSHHHHHHHHHHHHT------TCCEEEECSSHHHHHHHHHHHTCE-----ECCGGGG-GGCSEEEECS
T ss_pred CCCC--eEEEECCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHhccc-----hhhHhhc-cCCCEEEEcc
Confidence 3566 899999999999999999998 888888888755555666666654 3467788 9999999999
Q ss_pred CCchHH---HHHHHHHhcCCCCcEEEEec
Q 014834 187 SDAAQA---DNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 187 pd~~~~---~Vl~eI~~~lk~gaiLi~a~ 212 (417)
|+..+. .++. .+.+++|++|++..
T Consensus 180 p~~~~~~~~~~l~--~~~l~~g~~viD~~ 206 (263)
T 2d5c_A 180 RVGLEDPSASPLP--AELFPEEGAAVDLV 206 (263)
T ss_dssp STTTTCTTCCSSC--GGGSCSSSEEEESC
T ss_pred CCCCCCCCCCCCC--HHHcCCCCEEEEee
Confidence 988653 2222 45688898887543
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=3.6e-06 Score=92.16 Aligned_cols=212 Identities=12% Similarity=0.080 Sum_probs=134.7
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH-----------cC----ceec-CC-CcCC
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AG----FTEE-NG-TLGD 171 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~-----------~G----~~~~-~~-~~~s 171 (417)
+-++||||||.|.||..||..+... |++|++.+...+ ..+.+.+ .+ .... .. ...+
T Consensus 314 ~~i~~v~ViGaG~MG~gIA~~~a~a------G~~V~l~D~~~~-~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 386 (742)
T 3zwc_A 314 QPVSSVGVLGLGTMGRGIAISFARV------GISVVAVESDPK-QLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSS 386 (742)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHTT------TCEEEEECSSHH-HHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEES
T ss_pred ccccEEEEEcccHHHHHHHHHHHhC------CCchhcccchHh-hhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccC
Confidence 3458999999999999999999999 999988776532 2222111 00 0000 00 0122
Q ss_pred HHhhcCcCCEEEEccCCchH--HHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHH
Q 014834 172 IYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (417)
Q Consensus 172 ~~Ea~~~ADIViLavpd~~~--~~Vl~eI~~~lk~gaiLi-~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly 248 (417)
..+.+++||+||=+++-... .++|.+|-++++|++||. -++++++..+.+ .....-+|+..|+=-|.+.
T Consensus 387 ~~~~l~~aDlVIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTSsl~i~~ia~---~~~~p~r~ig~HFfnP~~~----- 458 (742)
T 3zwc_A 387 STKELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIAS---STDRPQLVIGTHFFSPAHV----- 458 (742)
T ss_dssp CGGGGGSCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHT---TSSCGGGEEEEECCSSTTT-----
T ss_pred cHHHHhhCCEEEEeccccHHHHHHHHHHHhhcCCCCceEEecCCcCChHHHHh---hcCCccccccccccCCCCC-----
Confidence 23457899999999997665 369999999999999875 778888877765 2223347999999888877
Q ss_pred hhcccccCCCceEE-EeecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHHH-HHHHHHHHHHH
Q 014834 249 VQGKEINGAGINSS-FAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHG-IVESLFRRFTE 326 (417)
Q Consensus 249 ~~G~~~~G~Gv~~l-iav~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~pA-~iea~~d~~v~ 326 (417)
|+.+ +.++...+.+.++.+.++...+|...++- .+ ..+-+.+-+.. ++..+. .+++
T Consensus 459 ----------m~LVEvi~g~~Ts~e~~~~~~~~~~~lgK~pV~v----kd-------~pGFi~NRi~~~~~~ea~-~l~~ 516 (742)
T 3zwc_A 459 ----------MRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVV----GN-------CYGFVGNRMLAPYYNQGF-FLLE 516 (742)
T ss_dssp ----------CCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEC----CC-------STTTTHHHHHHHHHHHHH-HHHH
T ss_pred ----------CceEEEecCCCCCHHHHHHHHHHHHHhCCCCccc----CC-------CCCccHHHHhhHHHHHHH-HHHH
Confidence 3331 34477788899999999999999753221 11 11223332222 333332 3566
Q ss_pred cCCCHHHHHHHHHHHHH--HHHHHHHHHhcHHHH
Q 014834 327 NGMSEDLAYKNTVECIT--GIISKIISTQGMLAV 358 (417)
Q Consensus 327 ~Gl~~e~A~~~~~q~~~--~g~~~li~e~G~~~l 358 (417)
.|.++++--.... .+- -|--.|+-..|++.+
T Consensus 517 eG~~~~~id~a~~-~~G~pmGPf~l~D~vGlDv~ 549 (742)
T 3zwc_A 517 EGSKPEDVDGVLE-EFGFKMGPFRVSDLAGLDVG 549 (742)
T ss_dssp TTCCHHHHHHHHH-HHTCSSCHHHHHHHHCHHHH
T ss_pred cCCCHHHHHHHHH-HcCCCCChHHHHHHhCHHHH
Confidence 7888766544321 110 144455556677443
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.46 E-value=5.1e-07 Score=88.13 Aligned_cols=95 Identities=15% Similarity=0.119 Sum_probs=65.3
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCC--cEEEEEecCChhhHHHHHHcC---------ceecCCCcCCHHhhcCcC
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD--IVVKVGLRKGSRSFAEARAAG---------FTEENGTLGDIYETISGS 179 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G--~~ViVg~r~~s~s~~~A~~~G---------~~~~~~~~~s~~Ea~~~A 179 (417)
|+||+|||.|+||.++|..|... | .+|.+.++..++....+.+.+ +.. ...+. +++++|
T Consensus 1 m~kI~VIGaG~~G~~la~~L~~~------g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~d~-~~~~~a 70 (309)
T 1hyh_A 1 ARKIGIIGLGNVGAAVAHGLIAQ------GVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNI---VINDW-AALADA 70 (309)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEE---EESCG-GGGTTC
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEE---EeCCH-HHhCCC
Confidence 57999999999999999999998 8 588877776444333333221 121 02456 788999
Q ss_pred CEEEEccCCchH--------------------HHHHHHHHhcCCCCcE-EEEecCchh
Q 014834 180 DLVLLLISDAAQ--------------------ADNYEKIFSCMKPNSI-LGLSHGFLL 216 (417)
Q Consensus 180 DIViLavpd~~~--------------------~~Vl~eI~~~lk~gai-Li~a~G~~i 216 (417)
|+||+++|+... .++++++.++. |+.+ |+++-+..+
T Consensus 71 DvViiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~-~~~~ii~~tNp~~~ 127 (309)
T 1hyh_A 71 DVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESG-FHGVLVVISNPVDV 127 (309)
T ss_dssp SEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTT-CCSEEEECSSSHHH
T ss_pred CEEEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCcHHH
Confidence 999999997653 46666777765 4554 445555543
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.44 E-value=4.7e-07 Score=93.80 Aligned_cols=94 Identities=24% Similarity=0.247 Sum_probs=73.6
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
..+.| |+|+|||+|.+|..+|+.++.. |.+|++.++.. .....+...|+. +.+++|++++||+|+++
T Consensus 243 ~~L~G-KTVgVIG~G~IGr~vA~~lraf------Ga~Viv~d~dp-~~a~~A~~~G~~-----vv~LeElL~~ADIVv~a 309 (464)
T 3n58_A 243 VMMAG-KVAVVCGYGDVGKGSAQSLAGA------GARVKVTEVDP-ICALQAAMDGFE-----VVTLDDAASTADIVVTT 309 (464)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSH-HHHHHHHHTTCE-----ECCHHHHGGGCSEEEEC
T ss_pred CcccC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEEeCCc-chhhHHHhcCce-----eccHHHHHhhCCEEEEC
Confidence 56889 9999999999999999999988 99998876643 333456667887 45899999999999998
Q ss_pred cCCchHHHHH-HHHHhcCCCCcEEEEecCch
Q 014834 186 ISDAAQADNY-EKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 186 vpd~~~~~Vl-~eI~~~lk~gaiLi~a~G~~ 215 (417)
+... .++ .+.+..||+|++|+.++-+.
T Consensus 310 tgt~---~lI~~e~l~~MK~GAILINvGRgd 337 (464)
T 3n58_A 310 TGNK---DVITIDHMRKMKDMCIVGNIGHFD 337 (464)
T ss_dssp CSSS---SSBCHHHHHHSCTTEEEEECSSST
T ss_pred CCCc---cccCHHHHhcCCCCeEEEEcCCCC
Confidence 7542 234 35667899999998665443
|
| >2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=1.2e-05 Score=78.69 Aligned_cols=176 Identities=16% Similarity=0.226 Sum_probs=128.4
Q ss_pred HcCceecCCCcCCHHhhcCcCCEEEEccCCch-HHHHHHHHHhcCCCCcEEEEecCchh---hhhhhcccCCCCCccEEE
Q 014834 159 AAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLDFPKNIGVIA 234 (417)
Q Consensus 159 ~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~-~~~Vl~eI~~~lk~gaiLi~a~G~~i---~~~~~~~i~~~~dv~VI~ 234 (417)
+.|+.+ +.|-.|+++++|++|+=+|-.. +.+++++|.++++.|++|..+.-++. .++-+ .+. ++|+.|..
T Consensus 126 daGVkV----tsDD~EAvk~AEi~IlftPfG~~t~~Iakkii~~lpEgAII~nTCTipp~~ly~~le-~l~-R~DvgIsS 199 (358)
T 2b0j_A 126 DVGLKV----TSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFK-DLG-REDLNITS 199 (358)
T ss_dssp GGTCEE----ESCHHHHHTTCSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSSSCHHHHHHHHH-HTT-CTTSEEEE
T ss_pred HcCcEe----ecchHHHhcCCCEEEEecCCCCCcHHHHHHHHhhCcCCCEEecccCCCHHHHHHHHH-HhC-cccCCeec
Confidence 368886 6788899999999999999765 78999999999999999998877642 22211 223 78999999
Q ss_pred eccCCCchhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCceeccchhhhhhhhccccchhhhchHH
Q 014834 235 VCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVH 314 (417)
Q Consensus 235 v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~~~iettf~~e~~~dl~ge~t~L~G~~p 314 (417)
.||-+ .+.. . |-.. +. ..-+++++.+....|++..|+. ++ ..+-++.+.++-.+-.+.
T Consensus 200 ~HPaa-VPgt-----~-------Gq~~-~g-~~yAtEEqIeklveLaksa~k~-ay------~vPAdl~SpV~DMgs~vT 257 (358)
T 2b0j_A 200 YHPGC-VPEM-----K-------GQVY-IA-EGYASEEAVNKLYEIGKIARGK-AF------KMPANLIGPVCDMCSAVT 257 (358)
T ss_dssp CBCSS-CTTT-----C-------CCEE-EE-ESSSCHHHHHHHHHHHHHHHSC-EE------EEEHHHHHHHHSTTHHHH
T ss_pred cCCCC-CCCC-----C-------Cccc-cc-cccCCHHHHHHHHHHHHHhCCC-eE------ecchhhccchhhhHHHHH
Confidence 99933 2221 1 2222 33 5678999999999999999986 11 123344544443444444
Q ss_pred HH----HHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhccc
Q 014834 315 GI----VESLFRRFT-ENGMSEDLAYKNTVECITGIISKIISTQGMLAVYNSFS 363 (417)
Q Consensus 315 A~----iea~~d~~v-~~Gl~~e~A~~~~~q~~~~g~~~li~e~G~~~l~~~vs 363 (417)
|. +-..++... -.|-|.+++-+.+.++|. -++.|+.++|+..|-+.+.
T Consensus 258 Av~~AGiL~Y~~~vtkIlgAP~~mie~q~~esL~-tiasLve~~GI~gm~k~Ln 310 (358)
T 2b0j_A 258 ATVYAGLLAYRDAVTKILGAPADFAQMMADEALT-QIHNLMKEKGIANMEEALD 310 (358)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH-HHHHHHHHHCGGGHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHhcC
Confidence 43 333444443 469999999999999999 9999999999999987775
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=3.6e-07 Score=94.21 Aligned_cols=91 Identities=23% Similarity=0.267 Sum_probs=71.0
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
..+.| ++|+|||+|.+|.++|+.|+.. |.+|++.+++. .....|...|+. +.+++|+++++|+|+++
T Consensus 216 ~~L~G-ktV~ViG~G~IGk~vA~~Lra~------Ga~Viv~D~dp-~ra~~A~~~G~~-----v~~Leeal~~ADIVi~a 282 (435)
T 3gvp_A 216 MMFGG-KQVVVCGYGEVGKGCCAALKAM------GSIVYVTEIDP-ICALQACMDGFR-----LVKLNEVIRQVDIVITC 282 (435)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCH-HHHHHHHHTTCE-----ECCHHHHTTTCSEEEEC
T ss_pred ceecC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEEeCCh-hhhHHHHHcCCE-----eccHHHHHhcCCEEEEC
Confidence 46788 9999999999999999999998 99988776653 334456678876 46899999999999997
Q ss_pred cCCchHHHHHH-HHHhcCCCCcEEEEec
Q 014834 186 ISDAAQADNYE-KIFSCMKPNSILGLSH 212 (417)
Q Consensus 186 vpd~~~~~Vl~-eI~~~lk~gaiLi~a~ 212 (417)
+-. ..++. +.+..||+|.+|+.++
T Consensus 283 tgt---~~lI~~e~l~~MK~gailINvg 307 (435)
T 3gvp_A 283 TGN---KNVVTREHLDRMKNSCIVCNMG 307 (435)
T ss_dssp SSC---SCSBCHHHHHHSCTTEEEEECS
T ss_pred CCC---cccCCHHHHHhcCCCcEEEEec
Confidence 321 22443 5667899999888554
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.4e-06 Score=85.63 Aligned_cols=80 Identities=16% Similarity=0.165 Sum_probs=62.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEE-EEecCChhhHHHHHHcCceecCCCcCCHHhhcC--cCCEEEEccCC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~--~ADIViLavpd 188 (417)
.||||||+|+||..++.+|++. .+++++ +.++..++..+.+.+.|... ..+.+++++ +.|+|++++|+
T Consensus 5 ~rvgiiG~G~~g~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~a~~~g~~~----~~~~~~~l~~~~~D~V~i~tp~ 75 (344)
T 3euw_A 5 LRIALFGAGRIGHVHAANIAAN-----PDLELVVIADPFIEGAQRLAEANGAEA----VASPDEVFARDDIDGIVIGSPT 75 (344)
T ss_dssp EEEEEECCSHHHHHHHHHHHHC-----TTEEEEEEECSSHHHHHHHHHTTTCEE----ESSHHHHTTCSCCCEEEECSCG
T ss_pred eEEEEECCcHHHHHHHHHHHhC-----CCcEEEEEECCCHHHHHHHHHHcCCce----eCCHHHHhcCCCCCEEEEeCCc
Confidence 6899999999999999999875 156665 44555444455667778664 678999998 89999999999
Q ss_pred chHHHHHHHHHh
Q 014834 189 AAQADNYEKIFS 200 (417)
Q Consensus 189 ~~~~~Vl~eI~~ 200 (417)
..+.++......
T Consensus 76 ~~h~~~~~~al~ 87 (344)
T 3euw_A 76 STHVDLITRAVE 87 (344)
T ss_dssp GGHHHHHHHHHH
T ss_pred hhhHHHHHHHHH
Confidence 999887766543
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=8.7e-07 Score=92.86 Aligned_cols=92 Identities=22% Similarity=0.321 Sum_probs=73.5
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
.+.| ++|+|||+|.+|..+|+.++.. |.+|++.++. ....+.+.+.|+. +.+.+++++++|+|++++
T Consensus 271 ~l~G-ktV~IiG~G~IG~~~A~~lka~------Ga~Viv~d~~-~~~~~~A~~~Ga~-----~~~l~e~l~~aDvVi~at 337 (494)
T 3ce6_A 271 LIGG-KKVLICGYGDVGKGCAEAMKGQ------GARVSVTEID-PINALQAMMEGFD-----VVTVEEAIGDADIVVTAT 337 (494)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTCE-----ECCHHHHGGGCSEEEECS
T ss_pred CCCc-CEEEEEccCHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHcCCE-----EecHHHHHhCCCEEEECC
Confidence 5788 9999999999999999999998 9988776655 3445677888986 357889999999999999
Q ss_pred CCchHHHHHH-HHHhcCCCCcEEEEecCc
Q 014834 187 SDAAQADNYE-KIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 187 pd~~~~~Vl~-eI~~~lk~gaiLi~a~G~ 214 (417)
+.... +. +..+.|++|.+|+..+-+
T Consensus 338 gt~~~---i~~~~l~~mk~ggilvnvG~~ 363 (494)
T 3ce6_A 338 GNKDI---IMLEHIKAMKDHAILGNIGHF 363 (494)
T ss_dssp SSSCS---BCHHHHHHSCTTCEEEECSSS
T ss_pred CCHHH---HHHHHHHhcCCCcEEEEeCCC
Confidence 86542 33 566779999998866543
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=3.7e-07 Score=91.52 Aligned_cols=96 Identities=19% Similarity=0.165 Sum_probs=69.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHc----CceecCCCcCCHHhhcCcCCEEEEccC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~----G~~~~~~~~~s~~Ea~~~ADIViLavp 187 (417)
++|+|||+|.||.+++++|.... ...+|.+++|+.++..+.+.+. |+.. ..+.+.+++++++|+|+++||
T Consensus 130 ~~v~iIGaG~~a~~~a~al~~~~----~~~~V~V~~r~~~~a~~la~~~~~~~g~~~--~~~~~~~eav~~aDiVi~aTp 203 (350)
T 1x7d_A 130 RKMALIGNGAQSEFQALAFHKHL----GIEEIVAYDTDPLATAKLIANLKEYSGLTI--RRASSVAEAVKGVDIITTVTA 203 (350)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHS----CCCEEEEECSSHHHHHHHHHHHTTCTTCEE--EECSSHHHHHTTCSEEEECCC
T ss_pred CeEEEECCcHHHHHHHHHHHHhC----CCcEEEEEcCCHHHHHHHHHHHHhccCceE--EEeCCHHHHHhcCCEEEEecc
Confidence 89999999999999999986530 0347888888766666666554 5321 015688999999999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecCch
Q 014834 188 DAAQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~gaiLi~a~G~~ 215 (417)
......++. ...+++|+.|+..+.+.
T Consensus 204 s~~~~pvl~--~~~l~~G~~V~~vgs~~ 229 (350)
T 1x7d_A 204 DKAYATIIT--PDMLEPGMHLNAVGGDC 229 (350)
T ss_dssp CSSEEEEEC--GGGCCTTCEEEECSCCB
T ss_pred CCCCCceec--HHHcCCCCEEEECCCCC
Confidence 864222332 25688999888776654
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.33 E-value=1.1e-06 Score=85.14 Aligned_cols=80 Identities=14% Similarity=0.099 Sum_probs=62.9
Q ss_pred CEEEEEcccchHHH-HHHHHHhhhhhhcCCcEEE-EEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCc
Q 014834 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG~G~mG~A-iA~~Lr~s~~~~~~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~ 189 (417)
.||||||+|.||.. ++.+|++. .+++++ +.++..++..+.+.+.|+.. ..+.++++++.|+|++++|+.
T Consensus 7 ~~igiIG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~a~~~~~~~----~~~~~~ll~~~D~V~i~tp~~ 77 (308)
T 3uuw_A 7 IKMGMIGLGSIAQKAYLPILTKS-----ERFEFVGAFTPNKVKREKICSDYRIMP----FDSIESLAKKCDCIFLHSSTE 77 (308)
T ss_dssp CEEEEECCSHHHHHHTHHHHTSC-----SSSEEEEEECSCHHHHHHHHHHHTCCB----CSCHHHHHTTCSEEEECCCGG
T ss_pred CcEEEEecCHHHHHHHHHHHHhC-----CCeEEEEEECCCHHHHHHHHHHcCCCC----cCCHHHHHhcCCEEEEeCCcH
Confidence 68999999999996 89888874 156665 55555455556677778764 678999999999999999999
Q ss_pred hHHHHHHHHHh
Q 014834 190 AQADNYEKIFS 200 (417)
Q Consensus 190 ~~~~Vl~eI~~ 200 (417)
.+.++......
T Consensus 78 ~h~~~~~~al~ 88 (308)
T 3uuw_A 78 THYEIIKILLN 88 (308)
T ss_dssp GHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 99888766443
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.8e-06 Score=80.82 Aligned_cols=78 Identities=23% Similarity=0.242 Sum_probs=58.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEE-EEEecCChhhHHHHHHcCceecCCCcCCHHhhc-CcCCEEEEccCCc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV-KVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~V-iVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~-~~ADIViLavpd~ 189 (417)
+||||||+|.||..++++|.+. |+++ .++++. .+. .+ . +.++++++ .++|+|++++|+.
T Consensus 1 m~vgiIG~G~mG~~~~~~l~~~------g~~lv~v~d~~-~~~----~~---~-----~~~~~~l~~~~~DvVv~~~~~~ 61 (236)
T 2dc1_A 1 MLVGLIGYGAIGKFLAEWLERN------GFEIAAILDVR-GEH----EK---M-----VRGIDEFLQREMDVAVEAASQQ 61 (236)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEEECSS-CCC----TT---E-----ESSHHHHTTSCCSEEEECSCHH
T ss_pred CEEEEECCCHHHHHHHHHHhcC------CCEEEEEEecC-cch----hh---h-----cCCHHHHhcCCCCEEEECCCHH
Confidence 4899999999999999999977 8887 455554 221 11 2 56889988 6999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEe
Q 014834 190 AQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 190 ~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
.+.+++... ++.|+.|++.
T Consensus 62 ~~~~~~~~~---l~~G~~vv~~ 80 (236)
T 2dc1_A 62 AVKDYAEKI---LKAGIDLIVL 80 (236)
T ss_dssp HHHHHHHHH---HHTTCEEEES
T ss_pred HHHHHHHHH---HHCCCcEEEE
Confidence 888777543 4567765543
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=1.8e-06 Score=85.23 Aligned_cols=80 Identities=11% Similarity=0.114 Sum_probs=62.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEE-EEecCChhhHHHHHHcCceecCCCcCCHHhhcC--cCCEEEEccCC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~--~ADIViLavpd 188 (417)
.||||||+|+||..++.+|++. ..+++++ +.++..++..+.+.+.|+.. ..+.+|+++ +.|+|++++|+
T Consensus 14 ~rvgiiG~G~~g~~~~~~l~~~----~~~~~lvav~d~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~D~V~i~tp~ 85 (354)
T 3q2i_A 14 IRFALVGCGRIANNHFGALEKH----ADRAELIDVCDIDPAALKAAVERTGARG----HASLTDMLAQTDADIVILTTPS 85 (354)
T ss_dssp EEEEEECCSTTHHHHHHHHHHT----TTTEEEEEEECSSHHHHHHHHHHHCCEE----ESCHHHHHHHCCCSEEEECSCG
T ss_pred ceEEEEcCcHHHHHHHHHHHhC----CCCeEEEEEEcCCHHHHHHHHHHcCCce----eCCHHHHhcCCCCCEEEECCCc
Confidence 6899999999999999999874 0156655 45555445556667778865 678999986 79999999999
Q ss_pred chHHHHHHHHH
Q 014834 189 AAQADNYEKIF 199 (417)
Q Consensus 189 ~~~~~Vl~eI~ 199 (417)
..+.++.....
T Consensus 86 ~~h~~~~~~al 96 (354)
T 3q2i_A 86 GLHPTQSIECS 96 (354)
T ss_dssp GGHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988776543
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.8e-06 Score=84.26 Aligned_cols=79 Identities=22% Similarity=0.222 Sum_probs=61.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEE-EEecCChhhHHHHHHcCceecCCCcCCHHhhcC--cCCEEEEccCC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~--~ADIViLavpd 188 (417)
.||||||+|+||..++.+|++. .+++++ +.++..++..+.+.+.|+. ..+.+++++ +.|+|++++|+
T Consensus 4 ~~vgiiG~G~~g~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~D~V~i~tp~ 73 (331)
T 4hkt_A 4 VRFGLLGAGRIGKVHAKAVSGN-----ADARLVAVADAFPAAAEAIAGAYGCE-----VRTIDAIEAAADIDAVVICTPT 73 (331)
T ss_dssp EEEEEECCSHHHHHHHHHHHHC-----TTEEEEEEECSSHHHHHHHHHHTTCE-----ECCHHHHHHCTTCCEEEECSCG
T ss_pred eEEEEECCCHHHHHHHHHHhhC-----CCcEEEEEECCCHHHHHHHHHHhCCC-----cCCHHHHhcCCCCCEEEEeCCc
Confidence 6899999999999999999874 156665 4555544545666777775 468999887 89999999999
Q ss_pred chHHHHHHHHHh
Q 014834 189 AAQADNYEKIFS 200 (417)
Q Consensus 189 ~~~~~Vl~eI~~ 200 (417)
..+.++......
T Consensus 74 ~~h~~~~~~al~ 85 (331)
T 4hkt_A 74 DTHADLIERFAR 85 (331)
T ss_dssp GGHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 999887766443
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.29 E-value=2.1e-06 Score=84.20 Aligned_cols=81 Identities=15% Similarity=0.184 Sum_probs=62.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEE-EEecCChhhHHHHHHcCceecCCCcCCHHhhcC--cCCEEEEccCC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~--~ADIViLavpd 188 (417)
.||||||+|.||..++.+|++. .+++++ +.+++.++..+.+.+.|+.. ...+.++++. +.|+|++++|+
T Consensus 6 ~~igiiG~G~~g~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~~~D~V~i~tp~ 77 (330)
T 3e9m_A 6 IRYGIMSTAQIVPRFVAGLRES-----AQAEVRGIASRRLENAQKMAKELAIPV---AYGSYEELCKDETIDIIYIPTYN 77 (330)
T ss_dssp EEEEECSCCTTHHHHHHHHHHS-----SSEEEEEEBCSSSHHHHHHHHHTTCCC---CBSSHHHHHHCTTCSEEEECCCG
T ss_pred EEEEEECchHHHHHHHHHHHhC-----CCcEEEEEEeCCHHHHHHHHHHcCCCc---eeCCHHHHhcCCCCCEEEEcCCC
Confidence 5899999999999999999884 156665 44555555566677778731 2678999987 79999999999
Q ss_pred chHHHHHHHHHh
Q 014834 189 AAQADNYEKIFS 200 (417)
Q Consensus 189 ~~~~~Vl~eI~~ 200 (417)
..+.++......
T Consensus 78 ~~h~~~~~~al~ 89 (330)
T 3e9m_A 78 QGHYSAAKLALS 89 (330)
T ss_dssp GGHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999887765443
|
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=9.7e-07 Score=87.00 Aligned_cols=119 Identities=13% Similarity=0.146 Sum_probs=84.7
Q ss_pred CEEEEE-cc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcC--cCCEEEEccC
Q 014834 112 NQIGVI-GW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (417)
Q Consensus 112 kkIgII-G~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~--~ADIViLavp 187 (417)
++|+|| |+ |++|..++++|++. |++++...++.... .+-.|+.. ..+++|+.+ ..|++++++|
T Consensus 14 ~siaVV~Gasg~~G~~~~~~l~~~------G~~~v~~VnP~~~g---~~i~G~~v----y~sl~el~~~~~vD~avI~vP 80 (305)
T 2fp4_A 14 NTKVICQGFTGKQGTFHSQQALEY------GTNLVGGTTPGKGG---KTHLGLPV----FNTVKEAKEQTGATASVIYVP 80 (305)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTTCTT---CEETTEEE----ESSHHHHHHHHCCCEEEECCC
T ss_pred CcEEEEECCCCCHHHHHHHHHHHC------CCcEEEEeCCCcCc---ceECCeee----echHHHhhhcCCCCEEEEecC
Confidence 889999 99 99999999999999 99855444442111 01257775 568999888 8999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCc-cEEEeccCCCchhHH
Q 014834 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNI-GVIAVCPKGMGPSVR 245 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv-~VI~v~Pntpg~~vr 245 (417)
+..+.++++++... .-..+|++++|+......+ .....++. .+..+.||+||....
T Consensus 81 ~~~~~~~~~e~i~~-Gi~~iv~~t~G~~~~~~~~-l~~~a~~~~gi~liGPnc~Gii~p 137 (305)
T 2fp4_A 81 PPFAAAAINEAIDA-EVPLVVCITEGIPQQDMVR-VKHRLLRQGKTRLIGPNCPGVINP 137 (305)
T ss_dssp HHHHHHHHHHHHHT-TCSEEEECCCCCCHHHHHH-HHHHHTTCSSCEEECSSSCEEEET
T ss_pred HHHHHHHHHHHHHC-CCCEEEEECCCCChHHHHH-HHHHHHhcCCcEEEeCCCCeEecc
Confidence 99999999875542 2244788999997643111 11223334 556688999988743
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.26 E-value=7.3e-06 Score=69.87 Aligned_cols=95 Identities=16% Similarity=0.054 Sum_probs=63.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHh---h-cCcCCEEEEccC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE---T-ISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~E---a-~~~ADIViLavp 187 (417)
++|.|+|+|.+|.++++.|.+. |++|++.+++ +...+.+.+.|+....+...+.+. + +.++|+||+++|
T Consensus 7 ~~v~I~G~G~iG~~la~~L~~~------g~~V~~id~~-~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~ 79 (141)
T 3llv_A 7 YEYIVIGSEAAGVGLVRELTAA------GKKVLAVDKS-KEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGS 79 (141)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT------TCCEEEEESC-HHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCS
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCeEEEEECC-HHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecC
Confidence 7999999999999999999999 9998877765 444556666676432222333322 2 568999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecC
Q 014834 188 DAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~gaiLi~a~G 213 (417)
+......+-.....+....++..+..
T Consensus 80 ~~~~n~~~~~~a~~~~~~~iia~~~~ 105 (141)
T 3llv_A 80 DDEFNLKILKALRSVSDVYAIVRVSS 105 (141)
T ss_dssp CHHHHHHHHHHHHHHCCCCEEEEESC
T ss_pred CHHHHHHHHHHHHHhCCceEEEEEcC
Confidence 76554433333333334445554443
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.8e-06 Score=84.99 Aligned_cols=79 Identities=25% Similarity=0.273 Sum_probs=60.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEE-EEecCChhhHHHHHHcCce-ecCCCcCCHHhhcC--cCCEEEEccC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFT-EENGTLGDIYETIS--GSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vi-Vg~r~~s~s~~~A~~~G~~-~~~~~~~s~~Ea~~--~ADIViLavp 187 (417)
.||||||+|+||..++.+|++. .+++++ +.++..++..+.+.+.|+. . ..+.+++++ +.|+|++++|
T Consensus 3 ~rvgiIG~G~~g~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~D~V~i~tp 73 (344)
T 3ezy_A 3 LRIGVIGLGRIGTIHAENLKMI-----DDAILYAISDVREDRLREMKEKLGVEKA----YKDPHELIEDPNVDAVLVCSS 73 (344)
T ss_dssp EEEEEECCSHHHHHHHHHGGGS-----TTEEEEEEECSCHHHHHHHHHHHTCSEE----ESSHHHHHHCTTCCEEEECSC
T ss_pred eEEEEEcCCHHHHHHHHHHHhC-----CCcEEEEEECCCHHHHHHHHHHhCCCce----eCCHHHHhcCCCCCEEEEcCC
Confidence 6899999999999999999874 156655 4455544545666777763 3 678999887 8999999999
Q ss_pred CchHHHHHHHHH
Q 014834 188 DAAQADNYEKIF 199 (417)
Q Consensus 188 d~~~~~Vl~eI~ 199 (417)
+..+.++.....
T Consensus 74 ~~~h~~~~~~al 85 (344)
T 3ezy_A 74 TNTHSELVIACA 85 (344)
T ss_dssp GGGHHHHHHHHH
T ss_pred CcchHHHHHHHH
Confidence 999988776543
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=9e-07 Score=86.34 Aligned_cols=117 Identities=15% Similarity=0.205 Sum_probs=79.8
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcC--cCCEEEEccCC
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~--~ADIViLavpd 188 (417)
.||+|||+ |.||..++++|++. |++++....+. +.- .+..|+.. ..+++|+.+ ..|++++++|+
T Consensus 8 ~rVaViG~sG~~G~~~~~~l~~~------g~~~V~~V~p~-~~g--~~~~G~~v----y~sl~el~~~~~~D~viI~tP~ 74 (288)
T 2nu8_A 8 TKVICQGFTGSQGTFHSEQAIAY------GTKMVGGVTPG-KGG--TTHLGLPV----FNTVREAVAATGATASVIYVPA 74 (288)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTT-CTT--CEETTEEE----ESSHHHHHHHHCCCEEEECCCG
T ss_pred CEEEEECCCChHHHHHHHHHHHC------CCeEEEEeCCC-ccc--ceeCCeec----cCCHHHHhhcCCCCEEEEecCH
Confidence 78999999 99999999999998 88854444332 110 01357665 578999887 89999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchh
Q 014834 189 AAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPS 243 (417)
Q Consensus 189 ~~~~~Vl~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~ 243 (417)
..+.+++.+.... ....+|+++.|++.....+ .....+...+..+.||++|..
T Consensus 75 ~~~~~~~~ea~~~-Gi~~iVi~t~G~~~~~~~~-l~~~A~~~gv~liGPNc~Gi~ 127 (288)
T 2nu8_A 75 PFCKDSILEAIDA-GIKLIITITEGIPTLDMLT-VKVKLDEAGVRMIGPNTPGVI 127 (288)
T ss_dssp GGHHHHHHHHHHT-TCSEEEECCCCCCHHHHHH-HHHHHHHHTCEEECSSCCEEE
T ss_pred HHHHHHHHHHHHC-CCCEEEEECCCCCHHHHHH-HHHHHHHcCCEEEecCCccee
Confidence 9999999876543 1233566889997643211 111112234445778887665
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=2.5e-06 Score=83.87 Aligned_cols=79 Identities=19% Similarity=0.125 Sum_probs=60.6
Q ss_pred CEEEEEcccchHHHHHHHHH-hhhhhhcCCcEEE-EEecCChhhHHHHHHcC--ceecCCCcCCHHhhcCc--CCEEEEc
Q 014834 112 NQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVK-VGLRKGSRSFAEARAAG--FTEENGTLGDIYETISG--SDLVLLL 185 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr-~s~~~~~~G~~Vi-Vg~r~~s~s~~~A~~~G--~~~~~~~~~s~~Ea~~~--ADIViLa 185 (417)
.||||||+|.||..++.+|+ .. .+++++ +.++..++..+.+.+.| ... ..+.+|++++ .|+|+++
T Consensus 3 ~rigiIG~G~~g~~~~~~l~~~~-----~~~~l~av~d~~~~~~~~~~~~~g~~~~~----~~~~~~ll~~~~~D~V~i~ 73 (344)
T 3mz0_A 3 LRIGVIGTGAIGKEHINRITNKL-----SGAEIVAVTDVNQEAAQKVVEQYQLNATV----YPNDDSLLADENVDAVLVT 73 (344)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTC-----SSEEEEEEECSSHHHHHHHHHHTTCCCEE----ESSHHHHHHCTTCCEEEEC
T ss_pred EEEEEECccHHHHHHHHHHHhhC-----CCcEEEEEEcCCHHHHHHHHHHhCCCCee----eCCHHHHhcCCCCCEEEEC
Confidence 58999999999999999998 42 156655 44555455556677778 343 6789999876 8999999
Q ss_pred cCCchHHHHHHHHH
Q 014834 186 ISDAAQADNYEKIF 199 (417)
Q Consensus 186 vpd~~~~~Vl~eI~ 199 (417)
+|+..+.++.....
T Consensus 74 tp~~~h~~~~~~al 87 (344)
T 3mz0_A 74 SWGPAHESSVLKAI 87 (344)
T ss_dssp SCGGGHHHHHHHHH
T ss_pred CCchhHHHHHHHHH
Confidence 99999988776543
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.4e-06 Score=88.67 Aligned_cols=97 Identities=13% Similarity=0.074 Sum_probs=71.2
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecC---------CC----------
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN---------GT---------- 168 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~---------~~---------- 168 (417)
+.+ .||+|||+|.+|...++.++.. |.+|++++++.. ..+.+.+.|....+ +.
T Consensus 182 v~~-~kV~ViG~G~iG~~aa~~a~~l------Ga~V~v~D~~~~-~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~ 253 (381)
T 3p2y_A 182 VKP-ASALVLGVGVAGLQALATAKRL------GAKTTGYDVRPE-VAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERA 253 (381)
T ss_dssp ECC-CEEEEESCSHHHHHHHHHHHHH------TCEEEEECSSGG-GHHHHHHTTCEECCCC-------------CHHHHH
T ss_pred cCC-CEEEEECchHHHHHHHHHHHHC------CCEEEEEeCCHH-HHHHHHHcCCeEEeccccccccccchhhhhHHHHh
Confidence 466 8999999999999999999998 999988877654 45666667764210 00
Q ss_pred --cCCHHhhcCcCCEEEEcc--CCchHHHHH-HHHHhcCCCCcEEEEec
Q 014834 169 --LGDIYETISGSDLVLLLI--SDAAQADNY-EKIFSCMKPNSILGLSH 212 (417)
Q Consensus 169 --~~s~~Ea~~~ADIViLav--pd~~~~~Vl-~eI~~~lk~gaiLi~a~ 212 (417)
..+++++++++|+||.++ |......++ ++....||||++|++.+
T Consensus 254 ~~~~~l~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA 302 (381)
T 3p2y_A 254 QQQQALEDAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLA 302 (381)
T ss_dssp HHHHHHHHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETT
T ss_pred hhHHHHHHHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEe
Confidence 114568899999999885 433333333 46778899999999776
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=3.9e-06 Score=73.22 Aligned_cols=101 Identities=15% Similarity=0.076 Sum_probs=64.9
Q ss_pred hhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHH-HcCceecCCCcCCH---Hhh-cCcC
Q 014834 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEENGTLGDI---YET-ISGS 179 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~-~~G~~~~~~~~~s~---~Ea-~~~A 179 (417)
++...+ ++|.|||+|.+|..+++.|+.. |++|++.+++.++ .+.+. ..|.....+...+. .++ +.++
T Consensus 14 ~~~~~~-~~v~IiG~G~iG~~la~~L~~~------g~~V~vid~~~~~-~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~a 85 (155)
T 2g1u_A 14 SKKQKS-KYIVIFGCGRLGSLIANLASSS------GHSVVVVDKNEYA-FHRLNSEFSGFTVVGDAAEFETLKECGMEKA 85 (155)
T ss_dssp ---CCC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCGGG-GGGSCTTCCSEEEESCTTSHHHHHTTTGGGC
T ss_pred hcccCC-CcEEEECCCHHHHHHHHHHHhC------CCeEEEEECCHHH-HHHHHhcCCCcEEEecCCCHHHHHHcCcccC
Confidence 466777 9999999999999999999998 9998887776443 33333 45643211112222 233 6789
Q ss_pred CEEEEccCCchHHHHHHHHHhcCCCCc-EEEEecC
Q 014834 180 DLVLLLISDAAQADNYEKIFSCMKPNS-ILGLSHG 213 (417)
Q Consensus 180 DIViLavpd~~~~~Vl~eI~~~lk~ga-iLi~a~G 213 (417)
|+||+++++......+..+...+.+.. ++..+.+
T Consensus 86 d~Vi~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~ 120 (155)
T 2g1u_A 86 DMVFAFTNDDSTNFFISMNARYMFNVENVIARVYD 120 (155)
T ss_dssp SEEEECSSCHHHHHHHHHHHHHTSCCSEEEEECSS
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHCCCCeEEEEECC
Confidence 999999998776655555555443433 4444444
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=1.3e-06 Score=85.22 Aligned_cols=117 Identities=15% Similarity=0.193 Sum_probs=81.3
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcC--cCCEEEEccCC
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~--~ADIViLavpd 188 (417)
+||+|+|+ |+||..++++|++. |++++....+.... .+-.|+.. ..+++|+.+ .+|++++++|+
T Consensus 8 ~~VaVvGasG~~G~~~~~~l~~~------g~~~v~~VnP~~~g---~~i~G~~v----y~sl~el~~~~~~Dv~Ii~vp~ 74 (288)
T 1oi7_A 8 TRVLVQGITGREGQFHTKQMLTY------GTKIVAGVTPGKGG---MEVLGVPV----YDTVKEAVAHHEVDASIIFVPA 74 (288)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTTCTT---CEETTEEE----ESSHHHHHHHSCCSEEEECCCH
T ss_pred CEEEEECCCCCHHHHHHHHHHHc------CCeEEEEECCCCCC---ceECCEEe----eCCHHHHhhcCCCCEEEEecCH
Confidence 78999999 99999999999998 99855444432110 01357765 568999888 89999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchh
Q 014834 189 AAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPS 243 (417)
Q Consensus 189 ~~~~~Vl~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~ 243 (417)
..+.+++++.... .-..+|+++.||+.....+ .....++..+..+.||++|..
T Consensus 75 ~~~~~~~~ea~~~-Gi~~vVi~t~G~~~~~~~~-l~~~a~~~gi~vigPNc~Gii 127 (288)
T 1oi7_A 75 PAAADAALEAAHA-GIPLIVLITEGIPTLDMVR-AVEEIKALGSRLIGGNCPGII 127 (288)
T ss_dssp HHHHHHHHHHHHT-TCSEEEECCSCCCHHHHHH-HHHHHHHHTCEEEESSSCEEE
T ss_pred HHHHHHHHHHHHC-CCCEEEEECCCCCHHHHHH-HHHHHHHcCCEEEeCCCCeEE
Confidence 9999999876543 2234677899997543211 111122334556678888765
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=1.7e-06 Score=87.24 Aligned_cols=99 Identities=16% Similarity=0.101 Sum_probs=68.9
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH-cCcee--cCCCcCCHHhhcCcCCEE
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTE--ENGTLGDIYETISGSDLV 182 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~-~G~~~--~~~~~~s~~Ea~~~ADIV 182 (417)
..+.| ++|+|||+|.+|.++++.++.. |.+|++.+++..+ .+.+.+ .|... ......++++.++++|+|
T Consensus 164 ~~l~g-~~V~ViG~G~iG~~~a~~a~~~------Ga~V~~~d~~~~~-l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvV 235 (377)
T 2vhw_A 164 PGVEP-ADVVVIGAGTAGYNAARIANGM------GATVTVLDINIDK-LRQLDAEFCGRIHTRYSSAYELEGAVKRADLV 235 (377)
T ss_dssp TTBCC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCHHH-HHHHHHHTTTSSEEEECCHHHHHHHHHHCSEE
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEeCCHHH-HHHHHHhcCCeeEeccCCHHHHHHHHcCCCEE
Confidence 46889 9999999999999999999988 9998877776433 344444 45431 000012466788899999
Q ss_pred EEccCCch--HHHH-HHHHHhcCCCCcEEEEec
Q 014834 183 LLLISDAA--QADN-YEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 183 iLavpd~~--~~~V-l~eI~~~lk~gaiLi~a~ 212 (417)
|.+++... ...+ .++..+.|++|.+|++.+
T Consensus 236 i~~~~~p~~~t~~li~~~~l~~mk~g~~iV~va 268 (377)
T 2vhw_A 236 IGAVLVPGAKAPKLVSNSLVAHMKPGAVLVDIA 268 (377)
T ss_dssp EECCCCTTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred EECCCcCCCCCcceecHHHHhcCCCCcEEEEEe
Confidence 99875221 1122 345667899999888665
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.19 E-value=9.8e-06 Score=69.68 Aligned_cols=75 Identities=21% Similarity=0.268 Sum_probs=55.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHH---h-hcCcCCEEEEccC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---E-TISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~---E-a~~~ADIViLavp 187 (417)
++|.|||+|.+|..+++.|++. |++|++.+++ ....+.+++.|+....+...+.+ + -+.++|+||+++|
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~------g~~v~vid~~-~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~ 80 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLAS------DIPLVVIETS-RTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIP 80 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT------TCCEEEEESC-HHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCS
T ss_pred CCEEEECcCHHHHHHHHHHHHC------CCCEEEEECC-HHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECC
Confidence 5899999999999999999999 9998877765 44466666778754222222322 2 2578999999999
Q ss_pred CchHHH
Q 014834 188 DAAQAD 193 (417)
Q Consensus 188 d~~~~~ 193 (417)
+.....
T Consensus 81 ~~~~n~ 86 (140)
T 3fwz_A 81 NGYEAG 86 (140)
T ss_dssp CHHHHH
T ss_pred ChHHHH
Confidence 877654
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=98.18 E-value=4.5e-06 Score=81.16 Aligned_cols=86 Identities=15% Similarity=0.160 Sum_probs=63.1
Q ss_pred CEEEEEcccchHHHH-HHHHHhhhhhhcCCcEEE-EEecCChhhHHHHHHcCceecCCCcCCHHhhcC--cCCEEEEccC
Q 014834 112 NQIGVIGWGSQGPAQ-AQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~Ai-A~~Lr~s~~~~~~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~--~ADIViLavp 187 (417)
.||||||+|.||..+ +..|.+. +++++ +.+++.++..+.+.+.|+.. ...+.+++++ +.|+|++++|
T Consensus 1 ~~vgiiG~G~~g~~~~~~~l~~~------~~~~vav~d~~~~~~~~~~~~~g~~~---~~~~~~~~l~~~~~D~V~i~tp 71 (332)
T 2glx_A 1 NRWGLIGASTIAREWVIGAIRAT------GGEVVSMMSTSAERGAAYATENGIGK---SVTSVEELVGDPDVDAVYVSTT 71 (332)
T ss_dssp CEEEEESCCHHHHHTHHHHHHHT------TCEEEEEECSCHHHHHHHHHHTTCSC---CBSCHHHHHTCTTCCEEEECSC
T ss_pred CeEEEEcccHHHHHhhhHHhhcC------CCeEEEEECCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEEeCC
Confidence 379999999999998 8888775 77765 45555444455667777641 1568899886 5999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEE
Q 014834 188 DAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~gaiLi 209 (417)
+..+.++..... +.|+-|+
T Consensus 72 ~~~h~~~~~~al---~~Gk~v~ 90 (332)
T 2glx_A 72 NELHREQTLAAI---RAGKHVL 90 (332)
T ss_dssp GGGHHHHHHHHH---HTTCEEE
T ss_pred hhHhHHHHHHHH---HCCCeEE
Confidence 999988776543 3566433
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=4.8e-06 Score=81.92 Aligned_cols=93 Identities=22% Similarity=0.277 Sum_probs=61.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhHHHHHH--cC------ceecCCCcCCHHhhcCcCCE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AG------FTEENGTLGDIYETISGSDL 181 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~~~A~~--~G------~~~~~~~~~s~~Ea~~~ADI 181 (417)
+||+|||+|+||.+++..|... |+ +|++.++..++....+.. .+ .... ..+ .+++++||+
T Consensus 1 mkI~VIGaG~~G~~la~~l~~~------g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~---~~d-~~~~~~aDv 70 (319)
T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLMK------GFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIY---AGD-YADLKGSDV 70 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEE---ECC-GGGGTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEE---eCC-HHHhCCCCE
Confidence 5899999999999999999998 88 888777654332222221 11 1110 234 467899999
Q ss_pred EEEccCCch----------------HHHHHHHHHhcCCCCcEE-EEecCch
Q 014834 182 VLLLISDAA----------------QADNYEKIFSCMKPNSIL-GLSHGFL 215 (417)
Q Consensus 182 ViLavpd~~----------------~~~Vl~eI~~~lk~gaiL-i~a~G~~ 215 (417)
||+++|... ..++++.|.++. |+.+| +++-+..
T Consensus 71 Viiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~ii~~tNp~~ 120 (319)
T 1a5z_A 71 VIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYA-PDSIVIVVTNPVD 120 (319)
T ss_dssp EEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHH
T ss_pred EEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeCCcHH
Confidence 999999643 245666676664 55554 4444554
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=7.5e-06 Score=71.79 Aligned_cols=115 Identities=10% Similarity=0.035 Sum_probs=77.2
Q ss_pred CEEEEEcc----cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccC
Q 014834 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~----G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavp 187 (417)
++|+|||+ |++|..++++|++. |++|+ ..+... ..-.|... ..+++|+....|++++++|
T Consensus 23 ~~iaVVGas~~~g~~G~~~~~~l~~~------G~~v~--~Vnp~~----~~i~G~~~----y~sl~~l~~~vDlvvi~vp 86 (144)
T 2d59_A 23 KKIALVGASPKPERDANIVMKYLLEH------GYDVY--PVNPKY----EEVLGRKC----YPSVLDIPDKIEVVDLFVK 86 (144)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHT------TCEEE--EECTTC----SEETTEEC----BSSGGGCSSCCSEEEECSC
T ss_pred CEEEEEccCCCCCchHHHHHHHHHHC------CCEEE--EECCCC----CeECCeec----cCCHHHcCCCCCEEEEEeC
Confidence 89999999 79999999999999 99743 332221 11146664 5688998889999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHH
Q 014834 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly 248 (417)
+..+.++++++...- .+. +++..|+.-..+.+ ..-..++++ +.||+++-...+++
T Consensus 87 ~~~~~~vv~~~~~~g-i~~-i~~~~g~~~~~l~~--~a~~~Gi~v--vGpnc~gv~~~~~~ 141 (144)
T 2d59_A 87 PKLTMEYVEQAIKKG-AKV-VWFQYNTYNREASK--KADEAGLII--VANRCMMREHERLL 141 (144)
T ss_dssp HHHHHHHHHHHHHHT-CSE-EEECTTCCCHHHHH--HHHHTTCEE--EESCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCE-EEECCCchHHHHHH--HHHHcCCEE--EcCCchhhcchhhc
Confidence 999999998766532 223 44556653211111 011134454 56999998766554
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=98.17 E-value=3.5e-06 Score=83.16 Aligned_cols=79 Identities=11% Similarity=0.132 Sum_probs=61.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEE-EEecCChhhHHHHHHcCceecCCCcCCHHhhc--CcCCEEEEccCC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETI--SGSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~--~~ADIViLavpd 188 (417)
.||||||+|.||..++.+|++. .+++++ ++++..++..+.+.+.|+.. ..+.+|++ .+.|+|++++|+
T Consensus 6 ~~vgiiG~G~~g~~~~~~l~~~-----~~~~lvav~d~~~~~~~~~~~~~g~~~----~~~~~~~l~~~~~D~V~i~tp~ 76 (354)
T 3db2_A 6 VGVAAIGLGRWAYVMADAYTKS-----EKLKLVTCYSRTEDKREKFGKRYNCAG----DATMEALLAREDVEMVIITVPN 76 (354)
T ss_dssp EEEEEECCSHHHHHHHHHHTTC-----SSEEEEEEECSSHHHHHHHHHHHTCCC----CSSHHHHHHCSSCCEEEECSCT
T ss_pred ceEEEEccCHHHHHHHHHHHhC-----CCcEEEEEECCCHHHHHHHHHHcCCCC----cCCHHHHhcCCCCCEEEEeCCh
Confidence 4899999999999999999875 156654 44555445555667778764 67899998 679999999999
Q ss_pred chHHHHHHHHH
Q 014834 189 AAQADNYEKIF 199 (417)
Q Consensus 189 ~~~~~Vl~eI~ 199 (417)
..+.++.....
T Consensus 77 ~~h~~~~~~al 87 (354)
T 3db2_A 77 DKHAEVIEQCA 87 (354)
T ss_dssp TSHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988776543
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=98.17 E-value=2e-06 Score=84.89 Aligned_cols=92 Identities=15% Similarity=0.179 Sum_probs=67.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH----cCceecCCCcCCHHhhcCcCCEEEEccC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~----~G~~~~~~~~~s~~Ea~~~ADIViLavp 187 (417)
++|+|||+|.||.++++.|+... ...+|.+++|+ +..+.+.+ .|+... .+ +.++++++||+|++|||
T Consensus 122 ~~v~iIGaG~~a~~~~~al~~~~----~~~~V~v~~r~--~a~~la~~l~~~~g~~~~--~~-~~~eav~~aDIVi~aT~ 192 (313)
T 3hdj_A 122 SVLGLFGAGTQGAEHAAQLSARF----ALEAILVHDPY--ASPEILERIGRRCGVPAR--MA-APADIAAQADIVVTATR 192 (313)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHS----CCCEEEEECTT--CCHHHHHHHHHHHTSCEE--EC-CHHHHHHHCSEEEECCC
T ss_pred cEEEEECccHHHHHHHHHHHHhC----CCcEEEEECCc--HHHHHHHHHHHhcCCeEE--Ee-CHHHHHhhCCEEEEccC
Confidence 89999999999999999998740 12378888887 44455443 465321 14 89999999999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecCchh
Q 014834 188 DAAQADNYEKIFSCMKPNSILGLSHGFLL 216 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~gaiLi~a~G~~i 216 (417)
... .++. .+.++||++|+..+.+..
T Consensus 193 s~~--pvl~--~~~l~~G~~V~~vGs~~p 217 (313)
T 3hdj_A 193 STT--PLFA--GQALRAGAFVGAIGSSLP 217 (313)
T ss_dssp CSS--CSSC--GGGCCTTCEEEECCCSST
T ss_pred CCC--cccC--HHHcCCCcEEEECCCCCC
Confidence 752 2332 356899999888777644
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=8.2e-06 Score=68.52 Aligned_cols=99 Identities=12% Similarity=0.083 Sum_probs=60.9
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHH---hh-cCcCCEEE
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---ET-ISGSDLVL 183 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~---Ea-~~~ADIVi 183 (417)
+++ ++|.|+|+|.+|..+++.|.+. |++|++.++.. ...+.+.+.|.....+...+.+ ++ +.++|+|+
T Consensus 4 ~~~-~~v~I~G~G~iG~~~a~~l~~~------g~~v~~~d~~~-~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi 75 (144)
T 2hmt_A 4 IKN-KQFAVIGLGRFGGSIVKELHRM------GHEVLAVDINE-EKVNAYASYATHAVIANATEENELLSLGIRNFEYVI 75 (144)
T ss_dssp --C-CSEEEECCSHHHHHHHHHHHHT------TCCCEEEESCH-HHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEE
T ss_pred CcC-CcEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCH-HHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEE
Confidence 455 8899999999999999999998 98887776653 3333333445432111122322 33 67899999
Q ss_pred EccCCc-hHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 184 LLISDA-AQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 184 Lavpd~-~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
+++++. .....+......+.+..++..+.+-
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~ 107 (144)
T 2hmt_A 76 VAIGANIQASTLTTLLLKELDIPNIWVKAQNY 107 (144)
T ss_dssp ECCCSCHHHHHHHHHHHHHTTCSEEEEECCSH
T ss_pred ECCCCchHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence 999975 3322333334445555555555543
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=98.14 E-value=8.2e-06 Score=79.77 Aligned_cols=86 Identities=12% Similarity=0.119 Sum_probs=62.1
Q ss_pred CEEEEEcccchHHHHHHHHH-hhhhhhcCCcEEE-EEecCChhhHHHHHHcCc-eecCCCcCCHHhhcC--cCCEEEEcc
Q 014834 112 NQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVK-VGLRKGSRSFAEARAAGF-TEENGTLGDIYETIS--GSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr-~s~~~~~~G~~Vi-Vg~r~~s~s~~~A~~~G~-~~~~~~~~s~~Ea~~--~ADIViLav 186 (417)
.||||||+|.||..++..|+ .. .+++++ +.++..++..+.+.+.|+ .. ..+.+++++ +.|+|++++
T Consensus 9 ~~v~iiG~G~ig~~~~~~l~~~~-----~~~~~vav~d~~~~~~~~~a~~~g~~~~----~~~~~~~l~~~~~D~V~i~t 79 (346)
T 3cea_A 9 LRAAIIGLGRLGERHARHLVNKI-----QGVKLVAACALDSNQLEWAKNELGVETT----YTNYKDMIDTENIDAIFIVA 79 (346)
T ss_dssp EEEEEECCSTTHHHHHHHHHHTC-----SSEEEEEEECSCHHHHHHHHHTTCCSEE----ESCHHHHHTTSCCSEEEECS
T ss_pred ceEEEEcCCHHHHHHHHHHHhcC-----CCcEEEEEecCCHHHHHHHHHHhCCCcc----cCCHHHHhcCCCCCEEEEeC
Confidence 68999999999999999998 43 156654 445544444455666777 33 568899886 699999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEE
Q 014834 187 SDAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiLi 209 (417)
|+..+.++..... +.|+.|+
T Consensus 80 p~~~h~~~~~~al---~~G~~v~ 99 (346)
T 3cea_A 80 PTPFHPEMTIYAM---NAGLNVF 99 (346)
T ss_dssp CGGGHHHHHHHHH---HTTCEEE
T ss_pred ChHhHHHHHHHHH---HCCCEEE
Confidence 9999988776543 3566443
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.12 E-value=2.9e-06 Score=86.88 Aligned_cols=97 Identities=19% Similarity=0.168 Sum_probs=71.0
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecC-------------CCc-----
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN-------------GTL----- 169 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~-------------~~~----- 169 (417)
+.+ .||+|||+|.+|..+++.++.. |.+|++++++..+ .+.+.+.|..... +..
T Consensus 188 v~~-~kV~ViG~G~iG~~aa~~a~~l------Ga~V~v~D~~~~~-l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~ 259 (405)
T 4dio_A 188 VPA-AKIFVMGAGVAGLQAIATARRL------GAVVSATDVRPAA-KEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSG 259 (405)
T ss_dssp ECC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSTTH-HHHHHHTTCEECCCCC-----------------C
T ss_pred cCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEcCCHHH-HHHHHHcCCceeecccccccccccccchhhhcch
Confidence 456 8999999999999999999988 9999888776544 5566667754200 001
Q ss_pred -------CCHHhhcCcCCEEEEcc--CCchHHHHH-HHHHhcCCCCcEEEEec
Q 014834 170 -------GDIYETISGSDLVLLLI--SDAAQADNY-EKIFSCMKPNSILGLSH 212 (417)
Q Consensus 170 -------~s~~Ea~~~ADIViLav--pd~~~~~Vl-~eI~~~lk~gaiLi~a~ 212 (417)
.++++++++||+||.++ |......++ ++....||||++|++.+
T Consensus 260 ~~~~~~~~~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA 312 (405)
T 4dio_A 260 EYQVKQAALVAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLA 312 (405)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETT
T ss_pred hhhhhhHhHHHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEe
Confidence 14678899999999885 543333333 46788899999999776
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.8e-05 Score=70.39 Aligned_cols=93 Identities=15% Similarity=0.094 Sum_probs=60.8
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCC---HHhh--cCcCC
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYET--ISGSD 180 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s---~~Ea--~~~AD 180 (417)
..+.+ ++|.|||+|.||..+++.|++.. |++|++.+++. ...+.+.+.|+....+...+ +.++ +.++|
T Consensus 35 ~~~~~-~~v~IiG~G~~G~~~a~~L~~~~-----g~~V~vid~~~-~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad 107 (183)
T 3c85_A 35 INPGH-AQVLILGMGRIGTGAYDELRARY-----GKISLGIEIRE-EAAQQHRSEGRNVISGDATDPDFWERILDTGHVK 107 (183)
T ss_dssp BCCTT-CSEEEECCSHHHHHHHHHHHHHH-----CSCEEEEESCH-HHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCC
T ss_pred cCCCC-CcEEEECCCHHHHHHHHHHHhcc-----CCeEEEEECCH-HHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCC
Confidence 34567 89999999999999999998630 67887777654 44555666776431111223 2344 77899
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCC
Q 014834 181 LVLLLISDAAQADNYEKIFSCMKPN 205 (417)
Q Consensus 181 IViLavpd~~~~~Vl~eI~~~lk~g 205 (417)
+||+++|+......+-.....+.++
T Consensus 108 ~vi~~~~~~~~~~~~~~~~~~~~~~ 132 (183)
T 3c85_A 108 LVLLAMPHHQGNQTALEQLQRRNYK 132 (183)
T ss_dssp EEEECCSSHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCChHHHHHHHHHHHHHCCC
Confidence 9999999866543332333334433
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.11 E-value=8.4e-06 Score=79.16 Aligned_cols=84 Identities=15% Similarity=0.167 Sum_probs=62.1
Q ss_pred CEEEEEcccchHHH-HHHHHHhhhhhhcCCcEEE-EEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCc
Q 014834 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG~G~mG~A-iA~~Lr~s~~~~~~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~ 189 (417)
.||||||+|.||.. ++..|.+. .+++++ +.++..++..+.+.+.|+.. ..+.+++..+.|+|++++|+.
T Consensus 6 ~~vgiiG~G~~g~~~~~~~l~~~-----~~~~lvav~d~~~~~~~~~~~~~g~~~----~~~~~~l~~~~D~V~i~tp~~ 76 (319)
T 1tlt_A 6 LRIGVVGLGGIAQKAWLPVLAAA-----SDWTLQGAWSPTRAKALPICESWRIPY----ADSLSSLAASCDAVFVHSSTA 76 (319)
T ss_dssp EEEEEECCSTHHHHTHHHHHHSC-----SSEEEEEEECSSCTTHHHHHHHHTCCB----CSSHHHHHTTCSEEEECSCTT
T ss_pred ceEEEECCCHHHHHHHHHHHHhC-----CCeEEEEEECCCHHHHHHHHHHcCCCc----cCcHHHhhcCCCEEEEeCCch
Confidence 58999999999996 88888763 156665 55666555556677778653 567777767899999999999
Q ss_pred hHHHHHHHHHhcCCCCcE
Q 014834 190 AQADNYEKIFSCMKPNSI 207 (417)
Q Consensus 190 ~~~~Vl~eI~~~lk~gai 207 (417)
.+.++..... +.|+-
T Consensus 77 ~h~~~~~~al---~~G~~ 91 (319)
T 1tlt_A 77 SHFDVVSTLL---NAGVH 91 (319)
T ss_dssp HHHHHHHHHH---HTTCE
T ss_pred hHHHHHHHHH---HcCCe
Confidence 9988776543 34653
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=98.09 E-value=6.2e-06 Score=80.67 Aligned_cols=86 Identities=12% Similarity=0.108 Sum_probs=61.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEE-EEecCChhhHHHHHHcCceecCCCcCCHHhhcC--cCCEEEEccCC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~--~ADIViLavpd 188 (417)
.||||||+|+||..++.+|+.. .+.+++ +++++.++..+.+.+.|+.. ...+.+|++. +.|+|++++|+
T Consensus 6 ~rigiiG~G~ig~~~~~~l~~~-----~~~~~~av~d~~~~~~~~~a~~~~~~~---~~~~~~~ll~~~~~D~V~i~tp~ 77 (329)
T 3evn_A 6 VRYGVVSTAKVAPRFIEGVRLA-----GNGEVVAVSSRTLESAQAFANKYHLPK---AYDKLEDMLADESIDVIYVATIN 77 (329)
T ss_dssp EEEEEEBCCTTHHHHHHHHHHH-----CSEEEEEEECSCSSTTCC---CCCCSC---EESCHHHHHTCTTCCEEEECSCG
T ss_pred eEEEEEechHHHHHHHHHHHhC-----CCcEEEEEEcCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEECCCc
Confidence 5899999999999999999876 134544 45555555556666777641 1678999988 79999999999
Q ss_pred chHHHHHHHHHhcCCCCcEE
Q 014834 189 AAQADNYEKIFSCMKPNSIL 208 (417)
Q Consensus 189 ~~~~~Vl~eI~~~lk~gaiL 208 (417)
..+.++..... +.|+-|
T Consensus 78 ~~h~~~~~~al---~aGk~V 94 (329)
T 3evn_A 78 QDHYKVAKAAL---LAGKHV 94 (329)
T ss_dssp GGHHHHHHHHH---HTTCEE
T ss_pred HHHHHHHHHHH---HCCCeE
Confidence 99988776543 345533
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.09 E-value=7.7e-06 Score=81.19 Aligned_cols=79 Identities=22% Similarity=0.255 Sum_probs=61.1
Q ss_pred CEEEEEcccchHHHHHHHHH-hhhhhhcCCcEEE-EEecCChhhHHHHHHcC--ceecCCCcCCHHhhcC--cCCEEEEc
Q 014834 112 NQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVK-VGLRKGSRSFAEARAAG--FTEENGTLGDIYETIS--GSDLVLLL 185 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr-~s~~~~~~G~~Vi-Vg~r~~s~s~~~A~~~G--~~~~~~~~~s~~Ea~~--~ADIViLa 185 (417)
.||||||+|.||..++.+|+ .. .+++++ +.++..++..+.+++.| ... ..+.+|+++ +.|+|+++
T Consensus 24 ~rvgiIG~G~~g~~~~~~l~~~~-----~~~~lvav~d~~~~~~~~~a~~~g~~~~~----~~~~~~ll~~~~~D~V~i~ 94 (357)
T 3ec7_A 24 LKAGIVGIGMIGSDHLRRLANTV-----SGVEVVAVCDIVAGRAQAALDKYAIEAKD----YNDYHDLINDKDVEVVIIT 94 (357)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTC-----TTEEEEEEECSSTTHHHHHHHHHTCCCEE----ESSHHHHHHCTTCCEEEEC
T ss_pred eeEEEECCcHHHHHHHHHHHhhC-----CCcEEEEEEeCCHHHHHHHHHHhCCCCee----eCCHHHHhcCCCCCEEEEc
Confidence 58999999999999999998 42 156655 45665556566777778 343 678999887 58999999
Q ss_pred cCCchHHHHHHHHH
Q 014834 186 ISDAAQADNYEKIF 199 (417)
Q Consensus 186 vpd~~~~~Vl~eI~ 199 (417)
+|+..+.++.....
T Consensus 95 tp~~~h~~~~~~al 108 (357)
T 3ec7_A 95 ASNEAHADVAVAAL 108 (357)
T ss_dssp SCGGGHHHHHHHHH
T ss_pred CCcHHHHHHHHHHH
Confidence 99999988776543
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=8.6e-06 Score=80.64 Aligned_cols=80 Identities=15% Similarity=0.136 Sum_probs=62.4
Q ss_pred CEEEEEcccchHH-HHHHHHHhhhhhhcCCcEEE-EEecCChhhHHHHHHcCceecCCCcCCHHhhcC--cCCEEEEccC
Q 014834 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~-AiA~~Lr~s~~~~~~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~--~ADIViLavp 187 (417)
.||||||+|.||. .++.+|++. .+++++ |.++..++..+.+.+.|+.. ..+.+|+++ +.|+|++++|
T Consensus 28 ~rigiIG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~a~~~g~~~----~~~~~~ll~~~~~D~V~i~tp 98 (350)
T 3rc1_A 28 IRVGVIGCADIAWRRALPALEAE-----PLTEVTAIASRRWDRAKRFTERFGGEP----VEGYPALLERDDVDAVYVPLP 98 (350)
T ss_dssp EEEEEESCCHHHHHTHHHHHHHC-----TTEEEEEEEESSHHHHHHHHHHHCSEE----EESHHHHHTCTTCSEEEECCC
T ss_pred eEEEEEcCcHHHHHHHHHHHHhC-----CCeEEEEEEcCCHHHHHHHHHHcCCCC----cCCHHHHhcCCCCCEEEECCC
Confidence 6899999999998 799999875 155654 55665555566777788875 578999986 5899999999
Q ss_pred CchHHHHHHHHHh
Q 014834 188 DAAQADNYEKIFS 200 (417)
Q Consensus 188 d~~~~~Vl~eI~~ 200 (417)
+..+.++......
T Consensus 99 ~~~h~~~~~~al~ 111 (350)
T 3rc1_A 99 AVLHAEWIDRALR 111 (350)
T ss_dssp GGGHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 9999888765443
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=98.07 E-value=1.3e-05 Score=79.70 Aligned_cols=85 Identities=12% Similarity=0.155 Sum_probs=63.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcC--cCCEEEEccCCc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~--~ADIViLavpd~ 189 (417)
.||||||+|.||..++.+|++. .+++++...+.+....+.+.+.|+.. ..+.+++++ +.|+|++++|+.
T Consensus 6 ~~vgiiG~G~~g~~~~~~l~~~-----~~~~l~av~d~~~~~~~~a~~~g~~~----~~~~~~ll~~~~~D~V~i~tp~~ 76 (359)
T 3e18_A 6 YQLVIVGYGGMGSYHVTLASAA-----DNLEVHGVFDILAEKREAAAQKGLKI----YESYEAVLADEKVDAVLIATPND 76 (359)
T ss_dssp EEEEEECCSHHHHHHHHHHHTS-----TTEEEEEEECSSHHHHHHHHTTTCCB----CSCHHHHHHCTTCCEEEECSCGG
T ss_pred CcEEEECcCHHHHHHHHHHHhC-----CCcEEEEEEcCCHHHHHHHHhcCCce----eCCHHHHhcCCCCCEEEEcCCcH
Confidence 4799999999999999999875 15566533344344455677778764 678999987 789999999999
Q ss_pred hHHHHHHHHHhcCCCCcEE
Q 014834 190 AQADNYEKIFSCMKPNSIL 208 (417)
Q Consensus 190 ~~~~Vl~eI~~~lk~gaiL 208 (417)
.+.++...... .|+-|
T Consensus 77 ~h~~~~~~al~---aGkhV 92 (359)
T 3e18_A 77 SHKELAISALE---AGKHV 92 (359)
T ss_dssp GHHHHHHHHHH---TTCEE
T ss_pred HHHHHHHHHHH---CCCCE
Confidence 99887765433 45533
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.07 E-value=7.9e-06 Score=79.61 Aligned_cols=79 Identities=19% Similarity=0.142 Sum_probs=57.6
Q ss_pred CEEEEEcccchHH-HHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhc-CcCCEEEEccCCc
Q 014834 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG~G~mG~-AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~-~~ADIViLavpd~ 189 (417)
.||||||+|+||. .++.+|+.. .+.++++.++..++..+.+.+.|+.. ...+..+++ .+.|+|++++|+.
T Consensus 3 ~~igiIG~G~ig~~~~~~~l~~~-----~~~~l~v~d~~~~~~~~~a~~~g~~~---~~~~~~~~l~~~~D~V~i~tp~~ 74 (323)
T 1xea_A 3 LKIAMIGLGDIAQKAYLPVLAQW-----PDIELVLCTRNPKVLGTLATRYRVSA---TCTDYRDVLQYGVDAVMIHAATD 74 (323)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTS-----TTEEEEEECSCHHHHHHHHHHTTCCC---CCSSTTGGGGGCCSEEEECSCGG
T ss_pred cEEEEECCCHHHHHHHHHHHHhC-----CCceEEEEeCCHHHHHHHHHHcCCCc---cccCHHHHhhcCCCEEEEECCch
Confidence 5899999999998 599998764 15676666665555556677777641 023444555 6899999999999
Q ss_pred hHHHHHHHH
Q 014834 190 AQADNYEKI 198 (417)
Q Consensus 190 ~~~~Vl~eI 198 (417)
.+.++..+.
T Consensus 75 ~h~~~~~~a 83 (323)
T 1xea_A 75 VHSTLAAFF 83 (323)
T ss_dssp GHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 998877654
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=98.06 E-value=1e-05 Score=78.48 Aligned_cols=98 Identities=18% Similarity=0.165 Sum_probs=62.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhHHHHH--HcCceec-CCC--cCCHHhhcCcCCEEEE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEAR--AAGFTEE-NGT--LGDIYETISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~~~A~--~~G~~~~-~~~--~~s~~Ea~~~ADIViL 184 (417)
+||+|||.|+||.+++..|... |+ +|.+.++...+....+. ..+.... +.. ..+..++++++|+||+
T Consensus 8 mkI~IiGaG~vG~~~a~~l~~~------g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~aD~Vii 81 (319)
T 1lld_A 8 TKLAVIGAGAVGSTLAFAAAQR------GIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVI 81 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCHHHhCCCCEEEE
Confidence 7999999999999999999998 88 88777665333221122 2232100 000 1112467889999999
Q ss_pred ccCCchH----------------HHHHHHHHhcCCCCcEE-EEecCchh
Q 014834 185 LISDAAQ----------------ADNYEKIFSCMKPNSIL-GLSHGFLL 216 (417)
Q Consensus 185 avpd~~~----------------~~Vl~eI~~~lk~gaiL-i~a~G~~i 216 (417)
+++.... .+++++|.++ .++++| ++.-|+..
T Consensus 82 ~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~~~Np~~~ 129 (319)
T 1lld_A 82 TAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLITNPVDI 129 (319)
T ss_dssp CCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEecCchHH
Confidence 9953322 2566677775 566654 46667754
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=98.06 E-value=9.1e-06 Score=71.07 Aligned_cols=117 Identities=14% Similarity=0.091 Sum_probs=76.8
Q ss_pred CEEEEEcc----cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccC
Q 014834 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~----G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavp 187 (417)
++|+|||+ |++|..++++|++. |++| +..+..+..+ .-.|... ..+++|+.+..|++++++|
T Consensus 14 ~~vaVvGas~~~g~~G~~~~~~l~~~------G~~v--~~vnp~~~~~--~i~G~~~----~~sl~el~~~vDlavi~vp 79 (140)
T 1iuk_A 14 KTIAVLGAHKDPSRPAHYVPRYLREQ------GYRV--LPVNPRFQGE--ELFGEEA----VASLLDLKEPVDILDVFRP 79 (140)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHT------TCEE--EEECGGGTTS--EETTEEC----BSSGGGCCSCCSEEEECSC
T ss_pred CEEEEECCCCCCCChHHHHHHHHHHC------CCEE--EEeCCCcccC--cCCCEEe----cCCHHHCCCCCCEEEEEeC
Confidence 89999999 89999999999999 9974 3333221000 1146664 5688998889999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHH
Q 014834 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly 248 (417)
+....++++++...- .+.+|+.++.+.-. +.+ ..-..+++++ .||+++-...++.
T Consensus 80 ~~~~~~v~~~~~~~g-i~~i~~~~g~~~~~-~~~--~a~~~Gir~v--gpnc~g~~~~~~~ 134 (140)
T 1iuk_A 80 PSALMDHLPEVLALR-PGLVWLQSGIRHPE-FEK--ALKEAGIPVV--ADRCLMVEHKRLF 134 (140)
T ss_dssp HHHHTTTHHHHHHHC-CSCEEECTTCCCHH-HHH--HHHHTTCCEE--ESCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCEEEEcCCcCHHH-HHH--HHHHcCCEEE--cCCccceEChhhc
Confidence 988889998765532 23455544444321 111 0101345554 6999988755443
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=98.06 E-value=1.3e-05 Score=78.38 Aligned_cols=91 Identities=22% Similarity=0.200 Sum_probs=61.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHH-------c--C--ceecCCCcCCHHhhcCcC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA-------A--G--FTEENGTLGDIYETISGS 179 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~-------~--G--~~~~~~~~~s~~Ea~~~A 179 (417)
+||+|||+|+||.++|..|... |+ +|++.++..++....+.+ . . +.. ..+. +++++|
T Consensus 5 ~kI~VIGaG~~G~~ia~~la~~------g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~----t~d~-~a~~~a 73 (317)
T 2ewd_A 5 RKIAVIGSGQIGGNIAYIVGKD------NLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIG----TDDY-ADISGS 73 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEE----ESCG-GGGTTC
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEE----CCCH-HHhCCC
Confidence 7999999999999999999998 88 888777764432221111 0 1 221 2456 788999
Q ss_pred CEEEEccC--------------Cc--hHHHHHHHHHhcCCCCcEEE-EecCc
Q 014834 180 DLVLLLIS--------------DA--AQADNYEKIFSCMKPNSILG-LSHGF 214 (417)
Q Consensus 180 DIViLavp--------------d~--~~~~Vl~eI~~~lk~gaiLi-~a~G~ 214 (417)
|+||++++ .. ...+++++|.++. |+++|+ .+...
T Consensus 74 DiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~-~~~iii~~sNp~ 124 (317)
T 2ewd_A 74 DVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYC-PNAFVICITNPL 124 (317)
T ss_dssp SEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECCSSH
T ss_pred CEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHC-CCcEEEEeCChH
Confidence 99999993 21 1346777777774 566654 44443
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.8e-05 Score=72.60 Aligned_cols=96 Identities=13% Similarity=0.078 Sum_probs=64.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCC---HHhh-cCcCCEEEEccC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYET-ISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s---~~Ea-~~~ADIViLavp 187 (417)
|||.|||+|.+|..+++.|.+. |++|++.+++.++..+.+...|+....+...+ +.++ ++++|+|+++++
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~------g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~ 74 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSR------KYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTP 74 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHT------TCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCS
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecC
Confidence 5799999999999999999999 99988877764443344555565432222223 2333 789999999999
Q ss_pred CchHHHHHHHHHhc-CCCCcEEEEecC
Q 014834 188 DAAQADNYEKIFSC-MKPNSILGLSHG 213 (417)
Q Consensus 188 d~~~~~Vl~eI~~~-lk~gaiLi~a~G 213 (417)
+.....++..+... .....++..+..
T Consensus 75 ~d~~n~~~~~~a~~~~~~~~iia~~~~ 101 (218)
T 3l4b_C 75 RDEVNLFIAQLVMKDFGVKRVVSLVND 101 (218)
T ss_dssp CHHHHHHHHHHHHHTSCCCEEEECCCS
T ss_pred CcHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 98776665555544 333345554433
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.05 E-value=2.6e-05 Score=63.26 Aligned_cols=92 Identities=16% Similarity=0.048 Sum_probs=62.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC-cEEEEEecCChhhHHHHHHcCceecCCCcC---CHHhhcCcCCEEEEccC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G-~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~---s~~Ea~~~ADIViLavp 187 (417)
++|.|||.|.||.++++.|.+. | ++|++.+|+.++ .+.....|+........ +..++++++|+||.++|
T Consensus 6 ~~v~I~G~G~iG~~~~~~l~~~------g~~~v~~~~r~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~ 78 (118)
T 3ic5_A 6 WNICVVGAGKIGQMIAALLKTS------SNYSVTVADHDLAA-LAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAP 78 (118)
T ss_dssp EEEEEECCSHHHHHHHHHHHHC------SSEEEEEEESCHHH-HHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSC
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCceEEEEeCCHHH-HHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCC
Confidence 8999999999999999999998 8 788877776433 34444455432111122 24567889999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecC
Q 014834 188 DAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~gaiLi~a~G 213 (417)
......+++.... .|.-.++..+
T Consensus 79 ~~~~~~~~~~~~~---~g~~~~~~~~ 101 (118)
T 3ic5_A 79 FFLTPIIAKAAKA---AGAHYFDLTE 101 (118)
T ss_dssp GGGHHHHHHHHHH---TTCEEECCCS
T ss_pred chhhHHHHHHHHH---hCCCEEEecC
Confidence 8777666655433 3544444333
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.04 E-value=1.3e-05 Score=76.65 Aligned_cols=151 Identities=12% Similarity=0.080 Sum_probs=91.6
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~ 190 (417)
|+||+|+|+|.||..+++.+.+. +.+++...+.... ...|+.. +.+++++. ++|+||-.+.|..
T Consensus 3 MmkI~ViGaGrMG~~i~~~l~~~------~~eLva~~d~~~~-----~~~gv~v----~~dl~~l~-~~DVvIDft~p~a 66 (243)
T 3qy9_A 3 SMKILLIGYGAMNQRVARLAEEK------GHEIVGVIENTPK-----ATTPYQQ----YQHIADVK-GADVAIDFSNPNL 66 (243)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT------TCEEEEEECSSCC-------CCSCB----CSCTTTCT-TCSEEEECSCHHH
T ss_pred ceEEEEECcCHHHHHHHHHHHhC------CCEEEEEEecCcc-----ccCCCce----eCCHHHHh-CCCEEEEeCChHH
Confidence 58999999999999999999887 5554433443222 1467765 56788888 9999997777766
Q ss_pred HHHHHHHHHhcCCCCc-EEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHH--HHHhhcccccC-CCceEEEeec
Q 014834 191 QADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVR--RLYVQGKEING-AGINSSFAVH 266 (417)
Q Consensus 191 ~~~Vl~eI~~~lk~ga-iLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr--~ly~~G~~~~G-~Gv~~liav~ 266 (417)
..+.++ ++.|. +|+-..|++-..++. .....+.+.+ ...||.+--+.- .+-+.--...+ .-+-. +-.|
T Consensus 67 ~~~~~~-----l~~g~~vVigTTG~s~e~~~~-l~~aa~~~~v-~~a~N~S~Gv~l~~~~~~~aa~~l~~~dieI-~E~H 138 (243)
T 3qy9_A 67 LFPLLD-----EDFHLPLVVATTGEKEKLLNK-LDELSQNMPV-FFSANMSYGVHALTKILAAAVPLLDDFDIEL-TEAH 138 (243)
T ss_dssp HHHHHT-----SCCCCCEEECCCSSHHHHHHH-HHHHTTTSEE-EECSSCCHHHHHHHHHHHHHHHHTTTSEEEE-EEEE
T ss_pred HHHHHH-----HhcCCceEeCCCCCCHHHHHH-HHHHHhcCCE-EEECCccHHHHHHHHHHHHHHHhcCCCCEEE-EEcC
Confidence 655543 56666 555667886533321 1122344454 789998765411 11000000111 12222 2233
Q ss_pred C----C-CCHHHHHHHHHHHHHhCC
Q 014834 267 Q----D-VDGRATNVALGWSVALGS 286 (417)
Q Consensus 267 ~----d-vsgea~e~a~~L~~alG~ 286 (417)
. | +||.|+.++..+ ...|.
T Consensus 139 H~~K~DaPSGTA~~la~~i-~~~~~ 162 (243)
T 3qy9_A 139 HNKKVDAPSGTLEKLYDVI-VSLKE 162 (243)
T ss_dssp CTTCCSSSCHHHHHHHHHH-HHHST
T ss_pred CCCCCCCCCHHHHHHHHHH-HhcCc
Confidence 3 2 689999999999 88774
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=98.04 E-value=4.5e-06 Score=82.42 Aligned_cols=93 Identities=13% Similarity=0.006 Sum_probs=66.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcC---ceecCCCcCCHHhhcCcCCEEEEccCC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG---FTEENGTLGDIYETISGSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G---~~~~~~~~~s~~Ea~~~ADIViLavpd 188 (417)
++|+|||+|.||.+++++|+.. +...+|.+++|+.++..+.+.+.+ +.. . +.+.++++ ++|+|+++||.
T Consensus 126 ~~v~iIGaG~~a~~~~~al~~~----~~~~~V~v~~r~~~~a~~la~~~~~~~~~~--~-~~~~~e~v-~aDvVi~aTp~ 197 (322)
T 1omo_A 126 SVFGFIGCGTQAYFQLEALRRV----FDIGEVKAYDVREKAAKKFVSYCEDRGISA--S-VQPAEEAS-RCDVLVTTTPS 197 (322)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH----SCCCEEEEECSSHHHHHHHHHHHHHTTCCE--E-ECCHHHHT-SSSEEEECCCC
T ss_pred CEEEEEcCcHHHHHHHHHHHHh----CCccEEEEECCCHHHHHHHHHHHHhcCceE--E-ECCHHHHh-CCCEEEEeeCC
Confidence 8999999999999999999874 002378888887666656665433 221 1 46788999 99999999997
Q ss_pred chHHHHHHHHHhcCCCCcEEEEecCchh
Q 014834 189 AAQADNYEKIFSCMKPNSILGLSHGFLL 216 (417)
Q Consensus 189 ~~~~~Vl~eI~~~lk~gaiLi~a~G~~i 216 (417)
.. .++. ...+++|+.|.+.+.+..
T Consensus 198 ~~--pv~~--~~~l~~G~~V~~ig~~~p 221 (322)
T 1omo_A 198 RK--PVVK--AEWVEEGTHINAIGADGP 221 (322)
T ss_dssp SS--CCBC--GGGCCTTCEEEECSCCST
T ss_pred CC--ceec--HHHcCCCeEEEECCCCCC
Confidence 53 2221 256889988877765543
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=98.01 E-value=4e-06 Score=81.88 Aligned_cols=76 Identities=16% Similarity=0.160 Sum_probs=59.3
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcCc---eecCCCcCCHHhhcCcCCEE
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGF---TEENGTLGDIYETISGSDLV 182 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G~---~~~~~~~~s~~Ea~~~ADIV 182 (417)
.++| ++|.|||.|.||.+++..|.+. |. +|+|++|+.++..+.+.+.+. ... ...+..+++.++|+|
T Consensus 138 ~l~~-~~vlVlGaGg~g~aia~~L~~~------G~~~V~v~nR~~~ka~~la~~~~~~~~~~~--~~~~~~~~~~~aDiv 208 (297)
T 2egg_A 138 TLDG-KRILVIGAGGGARGIYFSLLST------AAERIDMANRTVEKAERLVREGDERRSAYF--SLAEAETRLAEYDII 208 (297)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHTT------TCSEEEEECSSHHHHHHHHHHSCSSSCCEE--CHHHHHHTGGGCSEE
T ss_pred CCCC-CEEEEECcHHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHhhhccCcee--eHHHHHhhhccCCEE
Confidence 3678 9999999999999999999998 98 899999886666667766554 110 012456778899999
Q ss_pred EEccCCchH
Q 014834 183 LLLISDAAQ 191 (417)
Q Consensus 183 iLavpd~~~ 191 (417)
|.++|....
T Consensus 209 In~t~~~~~ 217 (297)
T 2egg_A 209 INTTSVGMH 217 (297)
T ss_dssp EECSCTTCS
T ss_pred EECCCCCCC
Confidence 999997654
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=98.01 E-value=1.1e-05 Score=78.99 Aligned_cols=88 Identities=14% Similarity=0.105 Sum_probs=63.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEE-EEecCChhhHHHHHHcCceecCCCcCCHHhhcC--cCCEEEEccCC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~--~ADIViLavpd 188 (417)
.||||||+|.||..++.+|+.. .. .+++++ |++++.++..+.+.+.|+.. ...+.+|+++ +.|+|++++|+
T Consensus 3 ~rigiiG~G~ig~~~~~~l~~~-~~--~~~~l~av~d~~~~~a~~~a~~~~~~~---~~~~~~~ll~~~~vD~V~i~tp~ 76 (334)
T 3ohs_X 3 LRWGIVSVGLISSDFTAVLQTL-PR--SEHQVVAVAARDLSRAKEFAQKHDIPK---AYGSYEELAKDPNVEVAYVGTQH 76 (334)
T ss_dssp EEEEEECCSHHHHHHHHHHTTS-CT--TTEEEEEEECSSHHHHHHHHHHHTCSC---EESSHHHHHHCTTCCEEEECCCG
T ss_pred cEEEEECchHHHHHHHHHHHhC-CC--CCeEEEEEEcCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEECCCc
Confidence 5999999999999999999865 00 023443 44555455566777788731 1678999887 69999999999
Q ss_pred chHHHHHHHHHhcCCCCcEE
Q 014834 189 AAQADNYEKIFSCMKPNSIL 208 (417)
Q Consensus 189 ~~~~~Vl~eI~~~lk~gaiL 208 (417)
..+.++..+.. +.|+-|
T Consensus 77 ~~H~~~~~~al---~~GkhV 93 (334)
T 3ohs_X 77 PQHKAAVMLCL---AAGKAV 93 (334)
T ss_dssp GGHHHHHHHHH---HTTCEE
T ss_pred HHHHHHHHHHH---hcCCEE
Confidence 99988776543 345533
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.00 E-value=7.9e-07 Score=85.32 Aligned_cols=92 Identities=15% Similarity=0.033 Sum_probs=63.6
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
++| +|+|||.|.||.+++..|.+. |. +|.|.+|+.++..+.+.+.+... ..+..++++++|+||.+|
T Consensus 107 ~~~--~vliiGaGg~a~ai~~~L~~~------G~~~I~v~nR~~~ka~~la~~~~~~~----~~~~~~~~~~aDiVInat 174 (253)
T 3u62_A 107 VKE--PVVVVGAGGAARAVIYALLQM------GVKDIWVVNRTIERAKALDFPVKIFS----LDQLDEVVKKAKSLFNTT 174 (253)
T ss_dssp CCS--SEEEECCSHHHHHHHHHHHHT------TCCCEEEEESCHHHHHTCCSSCEEEE----GGGHHHHHHTCSEEEECS
T ss_pred CCC--eEEEECcHHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHcccCC----HHHHHhhhcCCCEEEECC
Confidence 355 899999999999999999998 88 89999987554444333333222 456778889999999999
Q ss_pred CCchHHH--HHHHHHhcCCCCcEEEE-ecC
Q 014834 187 SDAAQAD--NYEKIFSCMKPNSILGL-SHG 213 (417)
Q Consensus 187 pd~~~~~--Vl~eI~~~lk~gaiLi~-a~G 213 (417)
|.....+ .+. .+.++++++|++ +.+
T Consensus 175 p~gm~p~~~~i~--~~~l~~~~~V~Divy~ 202 (253)
T 3u62_A 175 SVGMKGEELPVS--DDSLKNLSLVYDVIYF 202 (253)
T ss_dssp STTTTSCCCSCC--HHHHTTCSEEEECSSS
T ss_pred CCCCCCCCCCCC--HHHhCcCCEEEEeeCC
Confidence 8543221 111 123567887764 344
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=1e-05 Score=82.44 Aligned_cols=98 Identities=13% Similarity=0.084 Sum_probs=69.0
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCc-----------------
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL----------------- 169 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~----------------- 169 (417)
.+.| ++|+|||+|.+|...++.++.. |.+|++.+++..+ .+.+++.|.....-..
T Consensus 169 ~l~g-~~V~ViGaG~iG~~aa~~a~~~------Ga~V~v~D~~~~~-~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~ 240 (401)
T 1x13_A 169 KVPP-AKVMVIGAGVAGLAAIGAANSL------GAIVRAFDTRPEV-KEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDA 240 (401)
T ss_dssp EECC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCGGG-HHHHHHTTCEECCC--------CCHHHHHHSHH
T ss_pred CcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCHHH-HHHHHHcCCEEEEecccccccccccchhhccHH
Confidence 4678 9999999999999999999988 9988887776443 4556677765310000
Q ss_pred ------CCHHhhcCcCCEEEEc--cCCchHHHHH-HHHHhcCCCCcEEEEec
Q 014834 170 ------GDIYETISGSDLVLLL--ISDAAQADNY-EKIFSCMKPNSILGLSH 212 (417)
Q Consensus 170 ------~s~~Ea~~~ADIViLa--vpd~~~~~Vl-~eI~~~lk~gaiLi~a~ 212 (417)
.+++++++++|+||.+ +|......++ ++....|++|.+|++.+
T Consensus 241 ~~~~~~~~l~e~~~~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g~vIVdva 292 (401)
T 1x13_A 241 FIKAEMELFAAQAKEVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLA 292 (401)
T ss_dssp HHHHHHHHHHHHHHHCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETT
T ss_pred HHHHHHHHHHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCcEEEEEc
Confidence 0256788899999999 5522222333 35566799999988766
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.96 E-value=2.3e-05 Score=76.85 Aligned_cols=86 Identities=17% Similarity=0.238 Sum_probs=61.4
Q ss_pred hccCCCEEEEEcccchHHHH-HHHHHhhhhhhcCCcEEE-EEecCChhhHHHHHHcCceecCCCcCCHHhhcC--cCCEE
Q 014834 107 AFNGINQIGVIGWGSQGPAQ-AQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLV 182 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~Ai-A~~Lr~s~~~~~~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~--~ADIV 182 (417)
.++.|.||||||+|.||... +..|++. .+.+|+ |++++.++..+.|++.|+.. ...|.+|+++ +.|+|
T Consensus 19 ~~~~mirigiIG~G~ig~~~~~~~~~~~-----~~~~lvav~d~~~~~a~~~a~~~g~~~---~y~d~~ell~~~~iDaV 90 (350)
T 4had_A 19 YFQSMLRFGIISTAKIGRDNVVPAIQDA-----ENCVVTAIASRDLTRAREMADRFSVPH---AFGSYEEMLASDVIDAV 90 (350)
T ss_dssp ---CCEEEEEESCCHHHHHTHHHHHHHC-----SSEEEEEEECSSHHHHHHHHHHHTCSE---EESSHHHHHHCSSCSEE
T ss_pred cccCccEEEEEcChHHHHHHHHHHHHhC-----CCeEEEEEECCCHHHHHHHHHHcCCCe---eeCCHHHHhcCCCCCEE
Confidence 34567899999999999864 5666654 145654 45555556667788888742 1578999884 57999
Q ss_pred EEccCCchHHHHHHHHHh
Q 014834 183 LLLISDAAQADNYEKIFS 200 (417)
Q Consensus 183 iLavpd~~~~~Vl~eI~~ 200 (417)
++++|+..+.++......
T Consensus 91 ~I~tP~~~H~~~~~~al~ 108 (350)
T 4had_A 91 YIPLPTSQHIEWSIKAAD 108 (350)
T ss_dssp EECSCGGGHHHHHHHHHH
T ss_pred EEeCCCchhHHHHHHHHh
Confidence 999999999887765443
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=97.95 E-value=2e-05 Score=80.04 Aligned_cols=74 Identities=23% Similarity=0.321 Sum_probs=59.5
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
+.| ++|+|||+|.||.++++.|+.. |. +|++.+|...+..+.+.+.|.... ...+..+++.++|+||.++
T Consensus 165 l~g-~~VlIiGaG~iG~~~a~~l~~~------G~~~V~v~~r~~~ra~~la~~~g~~~~--~~~~l~~~l~~aDvVi~at 235 (404)
T 1gpj_A 165 LHD-KTVLVVGAGEMGKTVAKSLVDR------GVRAVLVANRTYERAVELARDLGGEAV--RFDELVDHLARSDVVVSAT 235 (404)
T ss_dssp CTT-CEEEEESCCHHHHHHHHHHHHH------CCSEEEEECSSHHHHHHHHHHHTCEEC--CGGGHHHHHHTCSEEEECC
T ss_pred ccC-CEEEEEChHHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHcCCcee--cHHhHHHHhcCCCEEEEcc
Confidence 688 9999999999999999999998 98 888888875554567777776531 1235778888999999999
Q ss_pred CCch
Q 014834 187 SDAA 190 (417)
Q Consensus 187 pd~~ 190 (417)
|...
T Consensus 236 ~~~~ 239 (404)
T 1gpj_A 236 AAPH 239 (404)
T ss_dssp SSSS
T ss_pred CCCC
Confidence 8654
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=97.95 E-value=1.2e-05 Score=84.28 Aligned_cols=88 Identities=10% Similarity=0.212 Sum_probs=71.8
Q ss_pred hchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhcccCchhh---hhhhhhhccChhHHHHHH
Q 014834 310 LGAVHGIVESLFRRFTENGMSEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKK---EFEKAYSASYYPCMEILY 386 (417)
Q Consensus 310 ~G~~pA~iea~~d~~v~~Gl~~e~A~~~~~q~~~~g~~~li~e~G~~~l~~~vss~~~~---~~~~~~~~~~~~~~~~m~ 386 (417)
+|.-.|.+.|.+|.+.+.|+++.+++++++++.++.+.+++.+.|+++|+|+||++.+. .|...|. +- ..+
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~ 467 (525)
T 3fr7_A 394 AGVYVALMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLGSRKWAPRFD---YI---LTQ 467 (525)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHTHHHHHTHHHHHHHHCHHHHHHHSCHHHHHHHHHHHHHHH---HH---HHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHhhhHHHHHHHhhhhhhhhhhhHHHHhhccHhhhcccccchHhHH---HH---HHH
Confidence 56667789999999999999999999999999999999999999999999999976542 2333332 22 237
Q ss_pred HHHHhhccChHH-HHHHH
Q 014834 387 ECYEDVAAGSEI-RSVVL 403 (417)
Q Consensus 387 ~~~~~v~~g~~~-~~~~~ 403 (417)
++|..|.+|..+ |+++.
T Consensus 468 ~~~~~~~~~~~~~~~~~~ 485 (525)
T 3fr7_A 468 QAFVTVDKDAPINQDLIS 485 (525)
T ss_dssp THHHHHHTTCCCCHHHHH
T ss_pred HhHHHhhcCCcchHHHHH
Confidence 999999999987 45443
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=97.91 E-value=2.8e-05 Score=76.91 Aligned_cols=90 Identities=14% Similarity=0.161 Sum_probs=62.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEE-EEecCChhhHHHHHHcCceecCCCcCCHHhhcC--cCCEEEEccCC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~--~ADIViLavpd 188 (417)
.||||||+|.||..++..|... .+++++ +.+++.++..+.+.+.|+........+.+++++ +.|+|++++|+
T Consensus 7 ~~vgiiG~G~ig~~~~~~l~~~-----~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~ 81 (362)
T 1ydw_A 7 IRIGVMGCADIARKVSRAIHLA-----PNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPT 81 (362)
T ss_dssp EEEEEESCCTTHHHHHHHHHHC-----TTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCG
T ss_pred eEEEEECchHHHHHHHHHHhhC-----CCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCCh
Confidence 6899999999999999999874 145554 445554455566777774100011568889886 59999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEE
Q 014834 189 AAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 189 ~~~~~Vl~eI~~~lk~gaiLi 209 (417)
..+.++.... ++.|+-|+
T Consensus 82 ~~h~~~~~~a---l~aGk~V~ 99 (362)
T 1ydw_A 82 SLHVEWAIKA---AEKGKHIL 99 (362)
T ss_dssp GGHHHHHHHH---HTTTCEEE
T ss_pred HHHHHHHHHH---HHCCCeEE
Confidence 9998877654 44566433
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=1.8e-06 Score=84.00 Aligned_cols=94 Identities=13% Similarity=0.101 Sum_probs=61.5
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
.++| ++|.|||.|.||.+++..|.+. |. +|.+.+|+.++..+.+.+..... ..+..++++++|+||.+
T Consensus 114 ~l~~-k~vlvlGaGg~g~aia~~L~~~------G~~~v~v~~R~~~~a~~la~~~~~~~----~~~~~~~~~~aDiVIna 182 (277)
T 3don_A 114 GIED-AYILILGAGGASKGIANELYKI------VRPTLTVANRTMSRFNNWSLNINKIN----LSHAESHLDEFDIIINT 182 (277)
T ss_dssp TGGG-CCEEEECCSHHHHHHHHHHHTT------CCSCCEEECSCGGGGTTCCSCCEEEC----HHHHHHTGGGCSEEEEC
T ss_pred CcCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHhccccc----HhhHHHHhcCCCEEEEC
Confidence 4678 9999999999999999999998 98 88899987655443332211111 33566778899999999
Q ss_pred cCCchHHHHHHHH-HhcCCCCcEEEEe
Q 014834 186 ISDAAQADNYEKI-FSCMKPNSILGLS 211 (417)
Q Consensus 186 vpd~~~~~Vl~eI-~~~lk~gaiLi~a 211 (417)
||.....++-..+ ...++++.+|++.
T Consensus 183 Tp~Gm~~~~~~~l~~~~l~~~~~V~D~ 209 (277)
T 3don_A 183 TPAGMNGNTDSVISLNRLASHTLVSDI 209 (277)
T ss_dssp CC-------CCSSCCTTCCSSCEEEES
T ss_pred ccCCCCCCCcCCCCHHHcCCCCEEEEe
Confidence 9976543221001 2346677776644
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=2.3e-05 Score=79.00 Aligned_cols=98 Identities=13% Similarity=0.097 Sum_probs=69.1
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcC---------------C
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG---------------D 171 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~---------------s 171 (417)
.+.| ++|+|||+|.+|.+.++.++.. |.+|++.+++..+ .+.+++.|.....-... +
T Consensus 169 ~l~g-~~V~ViGaG~iG~~aa~~a~~~------Ga~V~~~d~~~~~-~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s 240 (384)
T 1l7d_A 169 TVPP-ARVLVFGVGVAGLQAIATAKRL------GAVVMATDVRAAT-KEQVESLGGKFITVDDEAMKTAETAGGYAKEMG 240 (384)
T ss_dssp EECC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCSTT-HHHHHHTTCEECCC-------------------
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCHHH-HHHHHHcCCeEEeecccccccccccccchhhcC
Confidence 5688 9999999999999999999988 9988877776443 45566677643000000 0
Q ss_pred ----------HHhhcCcCCEEEEcc--CCchHHHHH-HHHHhcCCCCcEEEEec
Q 014834 172 ----------IYETISGSDLVLLLI--SDAAQADNY-EKIFSCMKPNSILGLSH 212 (417)
Q Consensus 172 ----------~~Ea~~~ADIViLav--pd~~~~~Vl-~eI~~~lk~gaiLi~a~ 212 (417)
+.+.++++|+||.++ |......++ ++....|++|.+|++.+
T Consensus 241 ~~~~~~~~~~l~~~~~~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g~vivdva 294 (384)
T 1l7d_A 241 EEFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLA 294 (384)
T ss_dssp ----CCHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred HHHHhhhHHHHHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCCEEEEEe
Confidence 667888999999998 432222233 45567799999988765
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.90 E-value=3.1e-05 Score=75.70 Aligned_cols=93 Identities=20% Similarity=0.212 Sum_probs=58.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhHHHHHHc--Cc------eecCCCcCCHHhhcCcCCE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--GF------TEENGTLGDIYETISGSDL 181 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~~~A~~~--G~------~~~~~~~~s~~Ea~~~ADI 181 (417)
+||+|||.|+||.++|..|... |+ +|.+.+++..+....+.+. +. .. ...+ .+++++||+
T Consensus 1 mkI~VIGaG~vG~~la~~la~~------g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i---~~~~-~~a~~~aDv 70 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLR------GSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRV---WHGG-HSELADAQV 70 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEE---EEEC-GGGGTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEE---EECC-HHHhCCCCE
Confidence 5899999999999999999988 87 8877766543322223321 11 11 0123 467899999
Q ss_pred EEEccCCchH----------------HHHHHHHHhcCCCCcEEEE-ecCch
Q 014834 182 VLLLISDAAQ----------------ADNYEKIFSCMKPNSILGL-SHGFL 215 (417)
Q Consensus 182 ViLavpd~~~----------------~~Vl~eI~~~lk~gaiLi~-a~G~~ 215 (417)
||++++.... .+++++|.++ .|+.+|++ +-+..
T Consensus 71 VIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~~~vi~~tNP~~ 120 (304)
T 2v6b_A 71 VILTAGANQKPGESRLDLLEKNADIFRELVPQITRA-APDAVLLVTSNPVD 120 (304)
T ss_dssp EEECC------------CHHHHHHHHHHHHHHHHHH-CSSSEEEECSSSHH
T ss_pred EEEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHh-CCCeEEEEecCchH
Confidence 9999953321 4455566666 57776554 44444
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=97.89 E-value=9.9e-06 Score=78.64 Aligned_cols=82 Identities=12% Similarity=0.134 Sum_probs=56.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEE-EEecCChhhHHHHHHcCceecCCCcCCHHhhcC--cCCEEEEccCC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~--~ADIViLavpd 188 (417)
.||||||+|+||..++.+|++. .+++++ +.++. ....+...+. +.. ..+.+++++ ++|+|++++|+
T Consensus 11 ~~igiIG~G~~g~~~~~~l~~~-----~~~~~v~v~d~~-~~~~~~~~~~-~~~----~~~~~~~l~~~~~D~V~i~tp~ 79 (315)
T 3c1a_A 11 VRLALIGAGRWGKNYIRTIAGL-----PGAALVRLASSN-PDNLALVPPG-CVI----ESDWRSVVSAPEVEAVIIATPP 79 (315)
T ss_dssp EEEEEEECTTTTTTHHHHHHHC-----TTEEEEEEEESC-HHHHTTCCTT-CEE----ESSTHHHHTCTTCCEEEEESCG
T ss_pred ceEEEECCcHHHHHHHHHHHhC-----CCcEEEEEEeCC-HHHHHHHHhh-Ccc----cCCHHHHhhCCCCCEEEEeCCh
Confidence 5899999999999999999875 145654 44443 2222111111 332 567888885 79999999999
Q ss_pred chHHHHHHHHHhcCCCCcE
Q 014834 189 AAQADNYEKIFSCMKPNSI 207 (417)
Q Consensus 189 ~~~~~Vl~eI~~~lk~gai 207 (417)
..+.++..+.. +.|+-
T Consensus 80 ~~h~~~~~~al---~~Gk~ 95 (315)
T 3c1a_A 80 ATHAEITLAAI---ASGKA 95 (315)
T ss_dssp GGHHHHHHHHH---HTTCE
T ss_pred HHHHHHHHHHH---HCCCc
Confidence 99988776543 34653
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.87 E-value=3.3e-05 Score=75.83 Aligned_cols=91 Identities=19% Similarity=0.173 Sum_probs=59.6
Q ss_pred hhccCCC--EEEEEcccchHHHHHHHHHhhhhh--hcCCcEEE-EEecCChhhHHHHHHcCceecCCCcCCHHhhcC--c
Q 014834 106 DAFNGIN--QIGVIGWGSQGPAQAQNLRDSLAE--AKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--G 178 (417)
Q Consensus 106 ~~l~gmk--kIgIIG~G~mG~AiA~~Lr~s~~~--~~~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~--~ 178 (417)
..+..|| ||||||+|.||..++.+++....- .-.+.+|+ |.+++.++..+.+++.|+.. ...|.+|+++ +
T Consensus 18 ~~~~~MkkirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~---~y~d~~ell~~~~ 94 (393)
T 4fb5_A 18 LYFQSMKPLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEK---ATADWRALIADPE 94 (393)
T ss_dssp ------CCCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSE---EESCHHHHHHCTT
T ss_pred ccccCCCCccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCe---ecCCHHHHhcCCC
Confidence 4566665 799999999999998887653000 00133543 45555566677888888742 1578999885 5
Q ss_pred CCEEEEccCCchHHHHHHHHH
Q 014834 179 SDLVLLLISDAAQADNYEKIF 199 (417)
Q Consensus 179 ADIViLavpd~~~~~Vl~eI~ 199 (417)
.|+|+++||+..+.++....+
T Consensus 95 iDaV~IatP~~~H~~~a~~al 115 (393)
T 4fb5_A 95 VDVVSVTTPNQFHAEMAIAAL 115 (393)
T ss_dssp CCEEEECSCGGGHHHHHHHHH
T ss_pred CcEEEECCChHHHHHHHHHHH
Confidence 799999999999988776543
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=97.85 E-value=2.5e-05 Score=78.27 Aligned_cols=80 Identities=13% Similarity=0.138 Sum_probs=61.4
Q ss_pred CEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEE-EEecCChhhHHHHHHcCceecCCCcCCHHhhcCc--CCEEEEccC
Q 014834 112 NQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~--ADIViLavp 187 (417)
.||||||+| .||..++.+|+.. .+++++ +.++..++..+.+.+.|+.. ..+.+|++++ .|+|++++|
T Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~a~~~g~~~----~~~~~ell~~~~vD~V~i~tp 73 (387)
T 3moi_A 3 IRFGICGLGFAGSVLMAPAMRHH-----PDAQIVAACDPNEDVRERFGKEYGIPV----FATLAEMMQHVQMDAVYIASP 73 (387)
T ss_dssp EEEEEECCSHHHHTTHHHHHHHC-----TTEEEEEEECSCHHHHHHHHHHHTCCE----ESSHHHHHHHSCCSEEEECSC
T ss_pred eEEEEEeCCHHHHHHHHHHHHhC-----CCeEEEEEEeCCHHHHHHHHHHcCCCe----ECCHHHHHcCCCCCEEEEcCC
Confidence 589999999 9999999999875 155654 44444445556677778865 6789999874 999999999
Q ss_pred CchHHHHHHHHHh
Q 014834 188 DAAQADNYEKIFS 200 (417)
Q Consensus 188 d~~~~~Vl~eI~~ 200 (417)
+..+.++......
T Consensus 74 ~~~H~~~~~~al~ 86 (387)
T 3moi_A 74 HQFHCEHVVQASE 86 (387)
T ss_dssp GGGHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 9999887765443
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=97.85 E-value=6.9e-05 Score=73.18 Aligned_cols=85 Identities=12% Similarity=0.051 Sum_probs=63.0
Q ss_pred CEEEEEcccchHH-HHHHHHHhhhhhhcCCcEE-EEEecCChhhHHHHHHcC-ceecCCCcCCHHhhcC--cCCEEEEcc
Q 014834 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVV-KVGLRKGSRSFAEARAAG-FTEENGTLGDIYETIS--GSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~-AiA~~Lr~s~~~~~~G~~V-iVg~r~~s~s~~~A~~~G-~~~~~~~~~s~~Ea~~--~ADIViLav 186 (417)
.||||||+|.+|. .++.+|+.. ++++ .|.++..++..+.+++.+ ... ..+.+++++ +.|+|++++
T Consensus 5 ~rvgiiG~G~~~~~~~~~~l~~~------~~~lvav~d~~~~~~~~~a~~~~~~~~----~~~~~~ll~~~~~D~V~i~t 74 (336)
T 2p2s_A 5 IRFAAIGLAHNHIYDMCQQLIDA------GAELAGVFESDSDNRAKFTSLFPSVPF----AASAEQLITDASIDLIACAV 74 (336)
T ss_dssp CEEEEECCSSTHHHHHHHHHHHT------TCEEEEEECSCTTSCHHHHHHSTTCCB----CSCHHHHHTCTTCCEEEECS
T ss_pred cEEEEECCChHHHHHhhhhhcCC------CcEEEEEeCCCHHHHHHHHHhcCCCcc----cCCHHHHhhCCCCCEEEEeC
Confidence 5899999999996 688888765 7775 455666566667777774 433 678999886 689999999
Q ss_pred CCchHHHHHHHHHhcCCCCc-EEE
Q 014834 187 SDAAQADNYEKIFSCMKPNS-ILG 209 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~ga-iLi 209 (417)
|+..+.++..... +.|+ +++
T Consensus 75 p~~~h~~~~~~al---~aGkhVl~ 95 (336)
T 2p2s_A 75 IPCDRAELALRTL---DAGKDFFT 95 (336)
T ss_dssp CGGGHHHHHHHHH---HTTCEEEE
T ss_pred ChhhHHHHHHHHH---HCCCcEEE
Confidence 9999988776543 3465 444
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0001 Score=72.99 Aligned_cols=88 Identities=19% Similarity=0.146 Sum_probs=58.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHH-------c--C--ceecCCCcCCHHhhcCcC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA-------A--G--FTEENGTLGDIYETISGS 179 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~-------~--G--~~~~~~~~~s~~Ea~~~A 179 (417)
+||+|||.|.||.++|..|... |+ +|.+.+++.++....+.. . . +.. +.+. +++++|
T Consensus 15 ~kI~ViGaG~vG~~iA~~la~~------g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~----t~d~-~al~~a 83 (328)
T 2hjr_A 15 KKISIIGAGQIGSTIALLLGQK------DLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFG----ENNY-EYLQNS 83 (328)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEE----ESCG-GGGTTC
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEE----CCCH-HHHCCC
Confidence 6999999999999999999998 88 877776654332211111 0 1 221 2466 789999
Q ss_pred CEEEEcc--CC--------------chHHHHHHHHHhcCCCCcEEEEe
Q 014834 180 DLVLLLI--SD--------------AAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 180 DIViLav--pd--------------~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
|+||+++ |. ....+++++|.++. |+.+|+++
T Consensus 84 D~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~ 130 (328)
T 2hjr_A 84 DVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC-PNAFVICI 130 (328)
T ss_dssp SEEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHC-TTCEEEEC
T ss_pred CEEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHC-CCeEEEEe
Confidence 9999998 32 11234555666664 67765544
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=97.80 E-value=4.6e-05 Score=74.73 Aligned_cols=83 Identities=20% Similarity=0.207 Sum_probs=59.2
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhh---cCCcEEE-EEecCChhhHHHHHHcCceecCCCcCCHHhhcC--cCCEEEEcc
Q 014834 113 QIGVIGWGSQGPAQAQNLRDSLAEA---KSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLI 186 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~---~~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~--~ADIViLav 186 (417)
+|||||+|.||..++.+++.. ++. ..+.+|+ |.+++.++..+.+++.|+.. ...|.+|+++ +.|+|+++|
T Consensus 8 rvgiIG~G~ig~~h~~~~~~~-~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~---~~~d~~~ll~~~~iDaV~I~t 83 (390)
T 4h3v_A 8 GIGLIGYAFMGAAHSQAWRSA-PRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWST---TETDWRTLLERDDVQLVDVCT 83 (390)
T ss_dssp EEEEECHHHHHHHHHHHHHHH-HHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSE---EESCHHHHTTCTTCSEEEECS
T ss_pred cEEEEcCCHHHHHHHHHHHhC-ccccccccCceEEEEEcCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEEeC
Confidence 689999999999999988764 110 0012443 44555455567777888743 1578999885 479999999
Q ss_pred CCchHHHHHHHHH
Q 014834 187 SDAAQADNYEKIF 199 (417)
Q Consensus 187 pd~~~~~Vl~eI~ 199 (417)
|+..+.++.....
T Consensus 84 P~~~H~~~~~~al 96 (390)
T 4h3v_A 84 PGDSHAEIAIAAL 96 (390)
T ss_dssp CGGGHHHHHHHHH
T ss_pred ChHHHHHHHHHHH
Confidence 9999998776543
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=97.80 E-value=4.3e-05 Score=76.82 Aligned_cols=82 Identities=12% Similarity=0.056 Sum_probs=62.0
Q ss_pred CEEEEEcccc---hHHHHHHHHHhhhhhhcCC-cEEEE--EecCChhhHHHHHHcCceecCCCcCCHHhhcCc-------
Q 014834 112 NQIGVIGWGS---QGPAQAQNLRDSLAEAKSD-IVVKV--GLRKGSRSFAEARAAGFTEENGTLGDIYETISG------- 178 (417)
Q Consensus 112 kkIgIIG~G~---mG~AiA~~Lr~s~~~~~~G-~~ViV--g~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~------- 178 (417)
.||||||+|. ||..++..++.. + ++++. .++..++..+.+++.|+.. .....+.+|++++
T Consensus 13 ~rvgiiG~G~~~~ig~~h~~~~~~~------~~~~lva~v~d~~~~~a~~~a~~~g~~~-~~~~~~~~~ll~~~~~~~~~ 85 (398)
T 3dty_A 13 IRWAMVGGGSQSQIGYIHRCAALRD------NTFVLVAGAFDIDPIRGSAFGEQLGVDS-ERCYADYLSMFEQEARRADG 85 (398)
T ss_dssp EEEEEEECCTTCSSHHHHHHHHHGG------GSEEEEEEECCSSHHHHHHHHHHTTCCG-GGBCSSHHHHHHHHTTCTTC
T ss_pred ceEEEEcCCccchhHHHHHHHHhhC------CCeEEEEEEeCCCHHHHHHHHHHhCCCc-ceeeCCHHHHHhcccccCCC
Confidence 5899999999 999999998876 4 56653 3455556667778888841 1126789998865
Q ss_pred CCEEEEccCCchHHHHHHHHHh
Q 014834 179 SDLVLLLISDAAQADNYEKIFS 200 (417)
Q Consensus 179 ADIViLavpd~~~~~Vl~eI~~ 200 (417)
.|+|++++|+..+.++......
T Consensus 86 vD~V~i~tp~~~H~~~~~~al~ 107 (398)
T 3dty_A 86 IQAVSIATPNGTHYSITKAALE 107 (398)
T ss_dssp CSEEEEESCGGGHHHHHHHHHH
T ss_pred CCEEEECCCcHHHHHHHHHHHH
Confidence 8999999999999887765443
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=97.78 E-value=9.5e-06 Score=78.97 Aligned_cols=75 Identities=16% Similarity=0.131 Sum_probs=57.7
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcCc---eecCCCcCCHHhhcCcCCEE
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGF---TEENGTLGDIYETISGSDLV 182 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G~---~~~~~~~~s~~Ea~~~ADIV 182 (417)
.++| +++.|||.|-+|.+++..|.+. |. +|.|.+|+.++..+.+.+.+- .. ..+.+++.+++|+|
T Consensus 123 ~l~~-k~vlvlGaGg~g~aia~~L~~~------G~~~v~v~~R~~~~a~~la~~~~~~~~~~----~~~~~~l~~~aDiI 191 (281)
T 3o8q_A 123 LLKG-ATILLIGAGGAARGVLKPLLDQ------QPASITVTNRTFAKAEQLAELVAAYGEVK----AQAFEQLKQSYDVI 191 (281)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHTT------CCSEEEEEESSHHHHHHHHHHHGGGSCEE----EEEGGGCCSCEEEE
T ss_pred CccC-CEEEEECchHHHHHHHHHHHhc------CCCeEEEEECCHHHHHHHHHHhhccCCee----EeeHHHhcCCCCEE
Confidence 4578 9999999999999999999998 96 899999986666666665442 11 23556666899999
Q ss_pred EEccCCchHH
Q 014834 183 LLLISDAAQA 192 (417)
Q Consensus 183 iLavpd~~~~ 192 (417)
|.+||.....
T Consensus 192 InaTp~gm~~ 201 (281)
T 3o8q_A 192 INSTSASLDG 201 (281)
T ss_dssp EECSCCCC--
T ss_pred EEcCcCCCCC
Confidence 9999987653
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=5.8e-05 Score=78.94 Aligned_cols=92 Identities=20% Similarity=0.203 Sum_probs=71.4
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
.|.| |+++|+|+|.+|.++|+.|+.. |.+|++.+++. .....+...|+. +.+.+++++.+|+|+.++
T Consensus 262 ~L~G-KtVvVtGaGgIG~aiA~~Laa~------GA~Viv~D~~~-~~a~~Aa~~g~d-----v~~lee~~~~aDvVi~at 328 (488)
T 3ond_A 262 MIAG-KVAVVAGYGDVGKGCAAALKQA------GARVIVTEIDP-ICALQATMEGLQ-----VLTLEDVVSEADIFVTTT 328 (488)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCH-HHHHHHHHTTCE-----ECCGGGTTTTCSEEEECS
T ss_pred cccC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCH-HHHHHHHHhCCc-----cCCHHHHHHhcCEEEeCC
Confidence 4789 9999999999999999999999 99988776653 334556667876 467889999999999887
Q ss_pred CCchHHHHH-HHHHhcCCCCcEEEEecCc
Q 014834 187 SDAAQADNY-EKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 187 pd~~~~~Vl-~eI~~~lk~gaiLi~a~G~ 214 (417)
.... ++ .+....|+++.+|+.++.+
T Consensus 329 G~~~---vl~~e~l~~mk~gaiVvNaG~~ 354 (488)
T 3ond_A 329 GNKD---IIMLDHMKKMKNNAIVCNIGHF 354 (488)
T ss_dssp SCSC---SBCHHHHTTSCTTEEEEESSST
T ss_pred CChh---hhhHHHHHhcCCCeEEEEcCCC
Confidence 6432 22 2356779999988866543
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=97.77 E-value=5.8e-05 Score=78.15 Aligned_cols=91 Identities=12% Similarity=0.158 Sum_probs=63.7
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHH-------------------HHHcC-ceecCCCcC
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-------------------ARAAG-FTEENGTLG 170 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~-------------------A~~~G-~~~~~~~~~ 170 (417)
|.+|+|||+|-+|..+|..|.+. |++|+ +.+.++...+. +.+.| +.. +.
T Consensus 21 m~~IaViGlGYVGLp~A~~~A~~------G~~V~-g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~----tt 89 (444)
T 3vtf_A 21 MASLSVLGLGYVGVVHAVGFALL------GHRVV-GYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSF----AE 89 (444)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH------TCEEE-EECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE----CS
T ss_pred CCEEEEEccCHHHHHHHHHHHhC------CCcEE-EEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeE----Ec
Confidence 48999999999999999999999 99986 55544432222 22222 111 45
Q ss_pred CHHhhcCcCCEEEEccCCc----------hHHHHHHHHHhcCC---CCcEEEEec
Q 014834 171 DIYETISGSDLVLLLISDA----------AQADNYEKIFSCMK---PNSILGLSH 212 (417)
Q Consensus 171 s~~Ea~~~ADIViLavpd~----------~~~~Vl~eI~~~lk---~gaiLi~a~ 212 (417)
+.++++++||++|+|||.. ....+.+.|.++|+ +|++|++-+
T Consensus 90 ~~~~ai~~ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eS 144 (444)
T 3vtf_A 90 SAEEAVAATDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKS 144 (444)
T ss_dssp SHHHHHHTSSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECS
T ss_pred CHHHHHhcCCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeC
Confidence 7889999999999998721 23456667888875 467777544
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00012 Score=72.49 Aligned_cols=93 Identities=12% Similarity=0.058 Sum_probs=60.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHH-------cCceecCCCcCCHHhhcCcCCEEE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~-------~G~~~~~~~~~s~~Ea~~~ADIVi 183 (417)
+||+|||.|.+|.++|..|... |+ +|.+++++.++....+.. .+....=..+.++++++++||+||
T Consensus 10 ~kI~VIGaG~vG~~lA~~la~~------g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi 83 (331)
T 1pzg_A 10 KKVAMIGSGMIGGTMGYLCALR------ELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVI 83 (331)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEE
Confidence 6999999999999999999998 88 877776654332221111 111100001257888999999999
Q ss_pred Ecc--CCc--h-----------------HHHHHHHHHhcCCCCcEEEEe
Q 014834 184 LLI--SDA--A-----------------QADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 184 Lav--pd~--~-----------------~~~Vl~eI~~~lk~gaiLi~a 211 (417)
+++ |.. . ..+++++|.++. |+.+|+.+
T Consensus 84 ~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~ 131 (331)
T 1pzg_A 84 VTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVV 131 (331)
T ss_dssp ECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEEC
T ss_pred EccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEE
Confidence 998 522 1 334555666664 67666544
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.77 E-value=4.6e-05 Score=76.24 Aligned_cols=99 Identities=14% Similarity=0.094 Sum_probs=67.9
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH-cCceec-C-CCcCCHHhhcCcCCEE
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEE-N-GTLGDIYETISGSDLV 182 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~-~G~~~~-~-~~~~s~~Ea~~~ADIV 182 (417)
..+++ ++|+|||.|.+|.++++.++.. |.+|++.+++..+ .+.+.+ .|.... + ....+.+++++++|+|
T Consensus 162 ~~l~~-~~V~ViGaG~iG~~~a~~l~~~------Ga~V~~~d~~~~~-~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvV 233 (369)
T 2eez_A 162 PGVAP-ASVVILGGGTVGTNAAKIALGM------GAQVTILDVNHKR-LQYLDDVFGGRVITLTATEANIKKSVQHADLL 233 (369)
T ss_dssp TBBCC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCHHH-HHHHHHHTTTSEEEEECCHHHHHHHHHHCSEE
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEECCHHH-HHHHHHhcCceEEEecCCHHHHHHHHhCCCEE
Confidence 46888 9999999999999999999998 9998888776443 333433 453210 0 0012466788899999
Q ss_pred EEccCCch--HHH-HHHHHHhcCCCCcEEEEec
Q 014834 183 LLLISDAA--QAD-NYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 183 iLavpd~~--~~~-Vl~eI~~~lk~gaiLi~a~ 212 (417)
|.+++... ... +.++..+.|++|.+|++.+
T Consensus 234 i~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~ 266 (369)
T 2eez_A 234 IGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVA 266 (369)
T ss_dssp EECCC-------CCSCHHHHTTSCTTCEEEECC
T ss_pred EECCCCCccccchhHHHHHHHhhcCCCEEEEEe
Confidence 99998543 122 2356678899998887655
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=2.5e-05 Score=76.77 Aligned_cols=83 Identities=11% Similarity=0.203 Sum_probs=57.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEE-EEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~ 190 (417)
.||+|||+|+||..++++|.+. .+++++ +.+++.++ +.+ .|+.. ..++++++.++|+|++++|+..
T Consensus 4 irV~IiG~G~mG~~~~~~l~~~-----~~~elvav~d~~~~~--~~~--~gv~~----~~d~~~ll~~~DvViiatp~~~ 70 (320)
T 1f06_A 4 IRVAIVGYGNLGRSVEKLIAKQ-----PDMDLVGIFSRRATL--DTK--TPVFD----VADVDKHADDVDVLFLCMGSAT 70 (320)
T ss_dssp EEEEEECCSHHHHHHHHHHTTC-----SSEEEEEEEESSSCC--SSS--SCEEE----GGGGGGTTTTCSEEEECSCTTT
T ss_pred CEEEEEeecHHHHHHHHHHhcC-----CCCEEEEEEcCCHHH--hhc--CCCce----eCCHHHHhcCCCEEEEcCCcHH
Confidence 5899999999999999999875 145544 44444332 222 46543 4577787788999999999988
Q ss_pred HHHHHHHHHhcCCCCcEEEE
Q 014834 191 QADNYEKIFSCMKPNSILGL 210 (417)
Q Consensus 191 ~~~Vl~eI~~~lk~gaiLi~ 210 (417)
+.+.+. ..++.|+-|++
T Consensus 71 h~~~~~---~al~aG~~Vv~ 87 (320)
T 1f06_A 71 DIPEQA---PKFAQFACTVD 87 (320)
T ss_dssp HHHHHH---HHHTTTSEEEC
T ss_pred HHHHHH---HHHHCCCEEEE
Confidence 755443 33455775553
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0002 Score=62.05 Aligned_cols=97 Identities=12% Similarity=-0.003 Sum_probs=62.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhH---HHHHHcCceecCCCcCC---HHhh-cCcCCEEEE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF---AEARAAGFTEENGTLGD---IYET-ISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~---~~A~~~G~~~~~~~~~s---~~Ea-~~~ADIViL 184 (417)
++|.|+|+|.+|..+++.|.+. |++|++.++...... +.....|+....+...+ +.++ ++++|+|++
T Consensus 4 ~~vlI~G~G~vG~~la~~L~~~------g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~ 77 (153)
T 1id1_A 4 DHFIVCGHSILAINTILQLNQR------GQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILA 77 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT------TCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEE
T ss_pred CcEEEECCCHHHHHHHHHHHHC------CCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEE
Confidence 6899999999999999999998 999888777532212 22223354432222223 2344 789999999
Q ss_pred ccCCchHHHHHHHHHhcCCC-CcEEEEecCc
Q 014834 185 LISDAAQADNYEKIFSCMKP-NSILGLSHGF 214 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~-gaiLi~a~G~ 214 (417)
++++......+......+.+ ..++..+.+-
T Consensus 78 ~~~~d~~n~~~~~~a~~~~~~~~ii~~~~~~ 108 (153)
T 1id1_A 78 LSDNDADNAFVVLSAKDMSSDVKTVLAVSDS 108 (153)
T ss_dssp CSSCHHHHHHHHHHHHHHTSSSCEEEECSSG
T ss_pred ecCChHHHHHHHHHHHHHCCCCEEEEEECCH
Confidence 99987665544444444433 3455555443
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=4.5e-05 Score=77.90 Aligned_cols=87 Identities=10% Similarity=0.137 Sum_probs=61.1
Q ss_pred CEEEEEcccchHH-HHHHHHHhhhhhhcCCcEEE-EEecCChhhHHHHHHcCceecC-CCcCCHHhhcC--cCCEEEEcc
Q 014834 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEEN-GTLGDIYETIS--GSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~-AiA~~Lr~s~~~~~~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~~-~~~~s~~Ea~~--~ADIViLav 186 (417)
.||||||+|.||. .++.+|++. .+++++ |.++..++..+.+++.|+...+ ....+.+++++ +.|+|++++
T Consensus 84 irigiIG~G~~g~~~~~~~l~~~-----~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iat 158 (433)
T 1h6d_A 84 FGYAIVGLGKYALNQILPGFAGC-----QHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIIL 158 (433)
T ss_dssp EEEEEECCSHHHHHTHHHHTTTC-----SSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECS
T ss_pred eEEEEECCcHHHHHHHHHHHhhC-----CCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcC
Confidence 5899999999997 899998764 145554 4455444445566677764100 01568888886 799999999
Q ss_pred CCchHHHHHHHHHhcCCCCc
Q 014834 187 SDAAQADNYEKIFSCMKPNS 206 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~ga 206 (417)
|+..+.++..... +.|+
T Consensus 159 p~~~h~~~~~~al---~aGk 175 (433)
T 1h6d_A 159 PNSLHAEFAIRAF---KAGK 175 (433)
T ss_dssp CGGGHHHHHHHHH---HTTC
T ss_pred CchhHHHHHHHHH---HCCC
Confidence 9999988776543 3455
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=97.74 E-value=8.3e-05 Score=68.80 Aligned_cols=94 Identities=12% Similarity=0.209 Sum_probs=63.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHH---hh-cCcCCEEEEccC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---ET-ISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~---Ea-~~~ADIViLavp 187 (417)
++|.|||+|.+|..+++.|.+. |+ |++.+++ ....+.+. .|+....+...+.+ ++ ++++|.|+++++
T Consensus 10 ~~viI~G~G~~G~~la~~L~~~------g~-v~vid~~-~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~ 80 (234)
T 2aef_A 10 RHVVICGWSESTLECLRELRGS------EV-FVLAEDE-NVRKKVLR-SGANFVHGDPTRVSDLEKANVRGARAVIVDLE 80 (234)
T ss_dssp CEEEEESCCHHHHHHHHHSTTS------EE-EEEESCG-GGHHHHHH-TTCEEEESCTTCHHHHHHTTCTTCSEEEECCS
T ss_pred CEEEEECCChHHHHHHHHHHhC------Ce-EEEEECC-HHHHHHHh-cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCC
Confidence 7899999999999999999988 88 7766554 33344444 66543222233332 33 789999999999
Q ss_pred CchHHHHHHHHHhcCCCC-cEEEEecCc
Q 014834 188 DAAQADNYEKIFSCMKPN-SILGLSHGF 214 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~g-aiLi~a~G~ 214 (417)
+......+......+.++ .++..+..-
T Consensus 81 ~d~~n~~~~~~a~~~~~~~~iia~~~~~ 108 (234)
T 2aef_A 81 SDSETIHCILGIRKIDESVRIIAEAERY 108 (234)
T ss_dssp CHHHHHHHHHHHHHHCSSSEEEEECSSG
T ss_pred CcHHHHHHHHHHHHHCCCCeEEEEECCH
Confidence 876654444444555666 566666543
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00015 Score=70.98 Aligned_cols=70 Identities=19% Similarity=0.110 Sum_probs=46.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHH--HcC-------ceecCCCcCCHHhhcCcCCEE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR--AAG-------FTEENGTLGDIYETISGSDLV 182 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~--~~G-------~~~~~~~~~s~~Ea~~~ADIV 182 (417)
+||+|||.|.||.++|..|... +.|.+|++.+++..+....+. ..+ ... ....+.++ +++||+|
T Consensus 1 mkI~VIGaG~vG~~la~~la~~----~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i--~~t~d~~~-l~~aDvV 73 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEK----QLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKV--TGSNDYAD-TANSDIV 73 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT----TCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEE--EEESCGGG-GTTCSEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC----CCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEE--EECCCHHH-HCCCCEE
Confidence 5899999999999999999874 115788877776443332221 111 111 01245655 8999999
Q ss_pred EEccCC
Q 014834 183 LLLISD 188 (417)
Q Consensus 183 iLavpd 188 (417)
|+++|.
T Consensus 74 iiav~~ 79 (310)
T 1guz_A 74 IITAGL 79 (310)
T ss_dssp EECCSC
T ss_pred EEeCCC
Confidence 999964
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=97.72 E-value=4.8e-05 Score=76.77 Aligned_cols=70 Identities=14% Similarity=0.094 Sum_probs=54.0
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcC-cCCEEEEc
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLLL 185 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~-~ADIViLa 185 (417)
.|+| ++|+|+|+|+||..+|+.|.+. |.+|++.+++..+..+.+.+.|... .+.+++.. +||+++.|
T Consensus 170 ~L~G-ktV~V~G~G~VG~~~A~~L~~~------GakVvv~D~~~~~l~~~a~~~ga~~-----v~~~~ll~~~~DIvip~ 237 (364)
T 1leh_A 170 SLEG-LAVSVQGLGNVAKALCKKLNTE------GAKLVVTDVNKAAVSAAVAEEGADA-----VAPNAIYGVTCDIFAPC 237 (364)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHHHHHHHHHHHCCEE-----CCGGGTTTCCCSEEEEC
T ss_pred CCCc-CEEEEECchHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHcCCEE-----EChHHHhccCCcEeecc
Confidence 6889 9999999999999999999999 9998877765444445666667653 35555554 89999987
Q ss_pred cCC
Q 014834 186 ISD 188 (417)
Q Consensus 186 vpd 188 (417)
...
T Consensus 238 a~~ 240 (364)
T 1leh_A 238 ALG 240 (364)
T ss_dssp SCS
T ss_pred chH
Confidence 533
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.70 E-value=9.6e-05 Score=72.09 Aligned_cols=85 Identities=18% Similarity=0.197 Sum_probs=55.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEE-EEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~ 190 (417)
.||||||+|+||..++..|++. .+++++ +.++. ... +++.|+.. ....++.+. .++|+|++|+|+..
T Consensus 10 irv~IIG~G~iG~~~~~~l~~~-----~~~elvav~d~~-~~~---~~~~g~~~--~~~~~l~~~-~~~DvViiatp~~~ 77 (304)
T 3bio_A 10 IRAAIVGYGNIGRYALQALREA-----PDFEIAGIVRRN-PAE---VPFELQPF--RVVSDIEQL-ESVDVALVCSPSRE 77 (304)
T ss_dssp EEEEEECCSHHHHHHHHHHHHC-----TTEEEEEEECC-----------CCTTS--CEESSGGGS-SSCCEEEECSCHHH
T ss_pred CEEEEECChHHHHHHHHHHhcC-----CCCEEEEEEcCC-HHH---HHHcCCCc--CCHHHHHhC-CCCCEEEECCCchh
Confidence 5899999999999999999874 156765 34443 222 22256431 113445554 78999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEe
Q 014834 191 QADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 191 ~~~Vl~eI~~~lk~gaiLi~a 211 (417)
+.++.... ++.|+-|++.
T Consensus 78 h~~~~~~a---l~aG~~Vi~e 95 (304)
T 3bio_A 78 VERTALEI---LKKGICTADS 95 (304)
T ss_dssp HHHHHHHH---HTTTCEEEEC
T ss_pred hHHHHHHH---HHcCCeEEEC
Confidence 98777654 3457755543
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.70 E-value=7.2e-05 Score=75.87 Aligned_cols=87 Identities=16% Similarity=0.196 Sum_probs=63.1
Q ss_pred CEEEEEcccc---hHHHHHHHHHhhhhhhcCC-cEEE--EEecCChhhHHHHHHcCceecCCCcCCHHhhcCc-------
Q 014834 112 NQIGVIGWGS---QGPAQAQNLRDSLAEAKSD-IVVK--VGLRKGSRSFAEARAAGFTEENGTLGDIYETISG------- 178 (417)
Q Consensus 112 kkIgIIG~G~---mG~AiA~~Lr~s~~~~~~G-~~Vi--Vg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~------- 178 (417)
.||||||+|. ||..++..++.. + ++++ +.++..++..+.+++.|+.. .....+.+|++++
T Consensus 38 ~rvgiiG~G~~~~ig~~h~~~~~~~------~~~~lva~v~d~~~~~a~~~a~~~g~~~-~~~~~~~~~ll~~~~~~~~~ 110 (417)
T 3v5n_A 38 IRLGMVGGGSGAFIGAVHRIAARLD------DHYELVAGALSSTPEKAEASGRELGLDP-SRVYSDFKEMAIREAKLKNG 110 (417)
T ss_dssp EEEEEESCC--CHHHHHHHHHHHHT------SCEEEEEEECCSSHHHHHHHHHHHTCCG-GGBCSCHHHHHHHHHHCTTC
T ss_pred ceEEEEcCCCchHHHHHHHHHHhhC------CCcEEEEEEeCCCHHHHHHHHHHcCCCc-ccccCCHHHHHhcccccCCC
Confidence 4899999999 999999998876 4 5654 33455555567777888841 1126789998875
Q ss_pred CCEEEEccCCchHHHHHHHHHhcCCCCcEE
Q 014834 179 SDLVLLLISDAAQADNYEKIFSCMKPNSIL 208 (417)
Q Consensus 179 ADIViLavpd~~~~~Vl~eI~~~lk~gaiL 208 (417)
.|+|++++|+..+.++.... |+.|+-|
T Consensus 111 vD~V~I~tp~~~H~~~~~~a---l~aGkhV 137 (417)
T 3v5n_A 111 IEAVAIVTPNHVHYAAAKEF---LKRGIHV 137 (417)
T ss_dssp CSEEEECSCTTSHHHHHHHH---HTTTCEE
T ss_pred CcEEEECCCcHHHHHHHHHH---HhCCCeE
Confidence 89999999999998877654 3456643
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=1.9e-05 Score=75.79 Aligned_cols=76 Identities=13% Similarity=-0.003 Sum_probs=54.2
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCc--eecCCCcCCHHhhcC-cCCEEE
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF--TEENGTLGDIYETIS-GSDLVL 183 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~--~~~~~~~~s~~Ea~~-~ADIVi 183 (417)
.++| ++|.|||.|.||.+++..|.+. |.+|++.+|+.++..+.+.+.+. .. ...+.+++.+ ++|+||
T Consensus 116 ~~~~-~~vlvlGaGg~g~a~a~~L~~~------G~~v~v~~R~~~~a~~l~~~~~~~~~~---~~~~~~~~~~~~~DivI 185 (272)
T 1p77_A 116 LRPN-QHVLILGAGGATKGVLLPLLQA------QQNIVLANRTFSKTKELAERFQPYGNI---QAVSMDSIPLQTYDLVI 185 (272)
T ss_dssp CCTT-CEEEEECCSHHHHTTHHHHHHT------TCEEEEEESSHHHHHHHHHHHGGGSCE---EEEEGGGCCCSCCSEEE
T ss_pred CcCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHccccCCe---EEeeHHHhccCCCCEEE
Confidence 3578 9999999999999999999998 88999999986665566555332 10 0123444434 899999
Q ss_pred EccCCchHH
Q 014834 184 LLISDAAQA 192 (417)
Q Consensus 184 Lavpd~~~~ 192 (417)
.++|.....
T Consensus 186 n~t~~~~~~ 194 (272)
T 1p77_A 186 NATSAGLSG 194 (272)
T ss_dssp ECCCC----
T ss_pred ECCCCCCCC
Confidence 999987654
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=97.64 E-value=4.7e-05 Score=75.55 Aligned_cols=80 Identities=15% Similarity=0.085 Sum_probs=55.6
Q ss_pred CEEEEEcccchHHH-HHHHHHhhhhhhcCCcEEE-EEecCChhhHHHHHHcCceecCCCcCCHHhhcCc--CCEEEEccC
Q 014834 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~A-iA~~Lr~s~~~~~~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~--ADIViLavp 187 (417)
.||||||+|.||.. ++.+|++. .+.+++ |+++..++..+.+.+.+... ...+.++++++ .|+|++++|
T Consensus 6 ~rigiIG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~a~~~~~~~---~~~~~~~ll~~~~vD~V~i~tp 77 (359)
T 3m2t_A 6 IKVGLVGIGAQMQENLLPSLLQM-----QDIRIVAACDSDLERARRVHRFISDIP---VLDNVPAMLNQVPLDAVVMAGP 77 (359)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTC-----TTEEEEEEECSSHHHHGGGGGTSCSCC---EESSHHHHHHHSCCSEEEECSC
T ss_pred ceEEEECCCHHHHHHHHHHHHhC-----CCcEEEEEEcCCHHHHHHHHHhcCCCc---ccCCHHHHhcCCCCCEEEEcCC
Confidence 58999999999985 88988764 156665 44444333333444443221 25789999875 499999999
Q ss_pred CchHHHHHHHHH
Q 014834 188 DAAQADNYEKIF 199 (417)
Q Consensus 188 d~~~~~Vl~eI~ 199 (417)
+..+.++.....
T Consensus 78 ~~~H~~~~~~al 89 (359)
T 3m2t_A 78 PQLHFEMGLLAM 89 (359)
T ss_dssp HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 999988776543
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00023 Score=70.32 Aligned_cols=91 Identities=15% Similarity=0.140 Sum_probs=58.1
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHH--c-------CceecCCCcCCHHhhcCcCC
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA--A-------GFTEENGTLGDIYETISGSD 180 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~--~-------G~~~~~~~~~s~~Ea~~~AD 180 (417)
++||+|||.|.||.++|..|... |+ +|.+.+.+.++....+.. . .... ..+.+. +++++||
T Consensus 4 ~~kI~VIGaG~vG~~ia~~la~~------g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i--~~t~d~-~al~~aD 74 (322)
T 1t2d_A 4 KAKIVLVGSGMIGGVMATLIVQK------NLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKV--SGSNTY-DDLAGAD 74 (322)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT------TCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCE--EEECCG-GGGTTCS
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEE--EECCCH-HHhCCCC
Confidence 37999999999999999999998 87 866666554322211111 1 1111 012466 7899999
Q ss_pred EEEEcc--CCc-------------------hHHHHHHHHHhcCCCCcEEEEe
Q 014834 181 LVLLLI--SDA-------------------AQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 181 IViLav--pd~-------------------~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
+||+++ |.. ...+++++|.++. |+.+|+++
T Consensus 75 ~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~ 125 (322)
T 1t2d_A 75 VVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVV 125 (322)
T ss_dssp EEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEEC
T ss_pred EEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEe
Confidence 999998 421 1234555666664 77766544
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.63 E-value=6e-05 Score=72.22 Aligned_cols=77 Identities=22% Similarity=0.099 Sum_probs=55.8
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhc-CcCCEEEEc
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLL 185 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~-~~ADIViLa 185 (417)
.++| +++.|+|.|.||.+++..|.+. |.+|++.+|+.++..+.+.+.+... .-...+.+++. .++|+||.+
T Consensus 116 ~l~~-k~vlViGaGg~g~a~a~~L~~~------G~~V~v~~R~~~~~~~la~~~~~~~-~~~~~~~~~~~~~~~DivVn~ 187 (271)
T 1nyt_A 116 IRPG-LRILLIGAGGASRGVLLPLLSL------DCAVTITNRTVSRAEELAKLFAHTG-SIQALSMDELEGHEFDLIINA 187 (271)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSHHHHHHHHHHTGGGS-SEEECCSGGGTTCCCSEEEEC
T ss_pred CcCC-CEEEEECCcHHHHHHHHHHHHc------CCEEEEEECCHHHHHHHHHHhhccC-CeeEecHHHhccCCCCEEEEC
Confidence 3578 9999999999999999999999 9899998887665556665543200 00022333443 589999999
Q ss_pred cCCchH
Q 014834 186 ISDAAQ 191 (417)
Q Consensus 186 vpd~~~ 191 (417)
+|....
T Consensus 188 t~~~~~ 193 (271)
T 1nyt_A 188 TSSGIS 193 (271)
T ss_dssp CSCGGG
T ss_pred CCCCCC
Confidence 997654
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00011 Score=73.91 Aligned_cols=84 Identities=19% Similarity=0.197 Sum_probs=60.1
Q ss_pred EEEEEcccchHHHHHHHHHhhh---hhhcCCcEEE-EEecCChhhHHHHHHcCceecCCCcCCHHhhcC--cCCEEEEcc
Q 014834 113 QIGVIGWGSQGPAQAQNLRDSL---AEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLI 186 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~---~~~~~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~--~ADIViLav 186 (417)
||||||+|.||..++.+|++.. .+...+.+|+ |.++..++..+.+++.|+.. ...|.+|+++ +.|+|++++
T Consensus 28 rvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~---~y~d~~~ll~~~~vD~V~I~t 104 (412)
T 4gqa_A 28 NIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEK---AYGDWRELVNDPQVDVVDITS 104 (412)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSE---EESSHHHHHHCTTCCEEEECS
T ss_pred eEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCe---EECCHHHHhcCCCCCEEEECC
Confidence 7999999999999999998750 0000023444 44555555667778888742 1578999885 579999999
Q ss_pred CCchHHHHHHHHH
Q 014834 187 SDAAQADNYEKIF 199 (417)
Q Consensus 187 pd~~~~~Vl~eI~ 199 (417)
|+..+.++....+
T Consensus 105 p~~~H~~~~~~al 117 (412)
T 4gqa_A 105 PNHLHYTMAMAAI 117 (412)
T ss_dssp CGGGHHHHHHHHH
T ss_pred CcHHHHHHHHHHH
Confidence 9999988776543
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.62 E-value=4.8e-05 Score=73.65 Aligned_cols=73 Identities=10% Similarity=0.084 Sum_probs=56.6
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcCc---eecCCCcCCHHhhc-CcCCE
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGF---TEENGTLGDIYETI-SGSDL 181 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G~---~~~~~~~~s~~Ea~-~~ADI 181 (417)
.++| +++.|||.|-+|.+++..|.+. |. +|.+.+|+.++..+.+.+.+. . ..+.+++. .++|+
T Consensus 117 ~l~~-k~~lvlGaGg~~~aia~~L~~~------G~~~v~i~~R~~~~a~~la~~~~~~~~~-----~~~~~~l~~~~~Di 184 (272)
T 3pwz_A 117 PLRN-RRVLLLGAGGAVRGALLPFLQA------GPSELVIANRDMAKALALRNELDHSRLR-----ISRYEALEGQSFDI 184 (272)
T ss_dssp CCTT-SEEEEECCSHHHHHHHHHHHHT------CCSEEEEECSCHHHHHHHHHHHCCTTEE-----EECSGGGTTCCCSE
T ss_pred CccC-CEEEEECccHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHhccCCee-----EeeHHHhcccCCCE
Confidence 3578 9999999999999999999998 96 899999987666677766542 2 12333433 78999
Q ss_pred EEEccCCchH
Q 014834 182 VLLLISDAAQ 191 (417)
Q Consensus 182 ViLavpd~~~ 191 (417)
||.+||....
T Consensus 185 vInaTp~gm~ 194 (272)
T 3pwz_A 185 VVNATSASLT 194 (272)
T ss_dssp EEECSSGGGG
T ss_pred EEECCCCCCC
Confidence 9999997654
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00015 Score=70.73 Aligned_cols=85 Identities=8% Similarity=0.053 Sum_probs=58.8
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHc-CceecCCCcCCHHhhc----------Cc
Q 014834 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETI----------SG 178 (417)
Q Consensus 111 mkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~-G~~~~~~~~~s~~Ea~----------~~ 178 (417)
|.||||||+ |.+|..++..|++. +.+++...+.+......++.. +... ..+.++++ .+
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~------~~~lvav~d~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~l~~~~~~ 72 (312)
T 3o9z_A 3 MTRFALTGLAGYIAPRHLKAIKEV------GGVLVASLDPATNVGLVDSFFPEAEF----FTEPEAFEAYLEDLRDRGEG 72 (312)
T ss_dssp CCEEEEECTTSSSHHHHHHHHHHT------TCEEEEEECSSCCCGGGGGTCTTCEE----ESCHHHHHHHHHHHHHTTCC
T ss_pred ceEEEEECCChHHHHHHHHHHHhC------CCEEEEEEcCCHHHHHHHhhCCCCce----eCCHHHHHHHhhhhcccCCC
Confidence 689999999 78999999999987 776554433322222223333 2332 56788876 67
Q ss_pred CCEEEEccCCchHHHHHHHHHhcCCCCcEE
Q 014834 179 SDLVLLLISDAAQADNYEKIFSCMKPNSIL 208 (417)
Q Consensus 179 ADIViLavpd~~~~~Vl~eI~~~lk~gaiL 208 (417)
.|+|++++|+..+.++...... .|+-|
T Consensus 73 vD~V~I~tP~~~H~~~~~~al~---aGkhV 99 (312)
T 3o9z_A 73 VDYLSIASPNHLHYPQIRMALR---LGANA 99 (312)
T ss_dssp CSEEEECSCGGGHHHHHHHHHH---TTCEE
T ss_pred CcEEEECCCchhhHHHHHHHHH---CCCeE
Confidence 9999999999999887765443 45533
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.60 E-value=3.8e-05 Score=75.11 Aligned_cols=117 Identities=13% Similarity=0.240 Sum_probs=76.4
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcC--cCCEEEEccCC
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~--~ADIViLavpd 188 (417)
.+|+|+|+ |.||..++++|++. |++++....+..... .-.|+.. ..+++|+.+ ..|++++++|+
T Consensus 14 ~~v~V~Gasg~~G~~~~~~l~~~------g~~~V~~VnP~~~g~---~i~G~~v----y~sl~el~~~~~~Dv~ii~vp~ 80 (294)
T 2yv1_A 14 TKAIVQGITGRQGSFHTKKMLEC------GTKIVGGVTPGKGGQ---NVHGVPV----FDTVKEAVKETDANASVIFVPA 80 (294)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHT------TCCEEEEECTTCTTC---EETTEEE----ESSHHHHHHHHCCCEEEECCCH
T ss_pred CEEEEECCCCCHHHHHHHHHHhC------CCeEEEEeCCCCCCc---eECCEee----eCCHHHHhhcCCCCEEEEccCH
Confidence 46788899 99999999999998 887443433321000 1257765 678999888 89999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchh
Q 014834 189 AAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPS 243 (417)
Q Consensus 189 ~~~~~Vl~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~ 243 (417)
..+.+++++.... ....+|+++.||......+ ....-+...+..+.||++|-.
T Consensus 81 ~~~~~~v~ea~~~-Gi~~vVi~t~G~~~~~~~~-l~~~A~~~gi~viGPNc~Gii 133 (294)
T 2yv1_A 81 PFAKDAVFEAIDA-GIELIVVITEHIPVHDTME-FVNYAEDVGVKIIGPNTPGIA 133 (294)
T ss_dssp HHHHHHHHHHHHT-TCSEEEECCSCCCHHHHHH-HHHHHHHHTCEEECSSCCEEE
T ss_pred HHHHHHHHHHHHC-CCCEEEEECCCCCHHHHHH-HHHHHHHcCCEEEcCCCceee
Confidence 9999999876553 2233667889996532111 001111223445567777654
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00016 Score=70.75 Aligned_cols=80 Identities=9% Similarity=0.062 Sum_probs=56.3
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHc-CceecCCCcCCHHhhc-----------C
Q 014834 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETI-----------S 177 (417)
Q Consensus 111 mkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~-G~~~~~~~~~s~~Ea~-----------~ 177 (417)
|.||||||+ |.||..++.+|++. +.+++...+.+......+... +... ..+.++++ .
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~------~~~lvav~d~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~l~~~~~~ 72 (318)
T 3oa2_A 3 MKNFALIGAAGYIAPRHMRAIKDT------GNCLVSAYDINDSVGIIDSISPQSEF----FTEFEFFLDHASNLKRDSAT 72 (318)
T ss_dssp CCEEEEETTTSSSHHHHHHHHHHT------TCEEEEEECSSCCCGGGGGTCTTCEE----ESSHHHHHHHHHHHTTSTTT
T ss_pred ceEEEEECCCcHHHHHHHHHHHhC------CCEEEEEEcCCHHHHHHHhhCCCCcE----ECCHHHHHHhhhhhhhccCC
Confidence 589999999 79999999999987 776554433322222223333 3332 56788775 5
Q ss_pred cCCEEEEccCCchHHHHHHHHHh
Q 014834 178 GSDLVLLLISDAAQADNYEKIFS 200 (417)
Q Consensus 178 ~ADIViLavpd~~~~~Vl~eI~~ 200 (417)
+.|+|++++|+..+.++......
T Consensus 73 ~vD~V~I~tP~~~H~~~~~~al~ 95 (318)
T 3oa2_A 73 ALDYVSICSPNYLHYPHIAAGLR 95 (318)
T ss_dssp SCCEEEECSCGGGHHHHHHHHHH
T ss_pred CCcEEEECCCcHHHHHHHHHHHH
Confidence 78999999999999887765443
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00013 Score=71.85 Aligned_cols=80 Identities=19% Similarity=0.180 Sum_probs=59.6
Q ss_pred CEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEE-EEecCChhhHHHHHHcCc-eecCCCcCCHHhhcC--cCCEEEEcc
Q 014834 112 NQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGF-TEENGTLGDIYETIS--GSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~Vi-Vg~r~~s~s~~~A~~~G~-~~~~~~~~s~~Ea~~--~ADIViLav 186 (417)
.+|||||+| .+|..++..|++. +.+++++ |.++..++..+.+++.|+ .. ..+.+|+++ +.|+|++++
T Consensus 19 irvgiIG~G~~~g~~~~~~l~~~----~~~~~lvav~d~~~~~~~~~a~~~~~~~~----~~~~~~ll~~~~vD~V~i~t 90 (340)
T 1zh8_A 19 IRLGIVGCGIAARELHLPALKNL----SHLFEITAVTSRTRSHAEEFAKMVGNPAV----FDSYEELLESGLVDAVDLTL 90 (340)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTT----TTTEEEEEEECSSHHHHHHHHHHHSSCEE----ESCHHHHHHSSCCSEEEECC
T ss_pred eeEEEEecCHHHHHHHHHHHHhC----CCceEEEEEEcCCHHHHHHHHHHhCCCcc----cCCHHHHhcCCCCCEEEEeC
Confidence 589999999 8999999999864 1145653 445554455566777786 33 678999885 589999999
Q ss_pred CCchHHHHHHHHH
Q 014834 187 SDAAQADNYEKIF 199 (417)
Q Consensus 187 pd~~~~~Vl~eI~ 199 (417)
|+..+.++.....
T Consensus 91 p~~~H~~~~~~al 103 (340)
T 1zh8_A 91 PVELNLPFIEKAL 103 (340)
T ss_dssp CGGGHHHHHHHHH
T ss_pred CchHHHHHHHHHH
Confidence 9999988776543
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00018 Score=71.35 Aligned_cols=94 Identities=17% Similarity=0.177 Sum_probs=62.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEE-EecCChhhHHHHHHcCceecC--------------CCcCCHHhhc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAGFTEEN--------------GTLGDIYETI 176 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViV-g~r~~s~s~~~A~~~G~~~~~--------------~~~~s~~Ea~ 176 (417)
.||||||+|.||..+++.|... .+++++. .++........++.+|+.... ....+.++++
T Consensus 3 irVgIiG~G~iG~~~~r~l~~~-----~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~ 77 (334)
T 2czc_A 3 VKVGVNGYGTIGKRVAYAVTKQ-----DDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLL 77 (334)
T ss_dssp EEEEEECCSHHHHHHHHHHHTC-----TTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHH
T ss_pred cEEEEEeEhHHHHHHHHHHhcC-----CCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhc
Confidence 5899999999999999999875 1455543 344333334556666643100 0124678888
Q ss_pred CcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 014834 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 177 ~~ADIViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~G 213 (417)
.+.|+|++|+|...+.+..... ++.|+.|++.+.
T Consensus 78 ~~vDvV~~aTp~~~h~~~a~~~---l~aGk~Vi~sap 111 (334)
T 2czc_A 78 EKVDIIVDATPGGIGAKNKPLY---EKAGVKAIFQGG 111 (334)
T ss_dssp TTCSEEEECCSTTHHHHHHHHH---HHHTCEEEECTT
T ss_pred cCCCEEEECCCccccHHHHHHH---HHcCCceEeecc
Confidence 8999999999999887766533 344665555543
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00021 Score=70.21 Aligned_cols=72 Identities=19% Similarity=0.195 Sum_probs=45.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhHHHHHHc--CceecC-C--CcCCHHhhcCcCCEEEE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--GFTEEN-G--TLGDIYETISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~~~A~~~--G~~~~~-~--~~~s~~Ea~~~ADIViL 184 (417)
+||+|||.|+||.+++..|+.. |+ +|++.+++.++....+.+. ...... . ...+..+++++||+||+
T Consensus 7 ~kI~IIGaG~vG~sla~~l~~~------~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~aDvVii 80 (316)
T 1ldn_A 7 ARVVVIGAGFVGASYVFALMNQ------GIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVI 80 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEE
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCCCEEEE
Confidence 7999999999999999999887 65 6766655432211111111 110000 0 01234578999999999
Q ss_pred ccCCc
Q 014834 185 LISDA 189 (417)
Q Consensus 185 avpd~ 189 (417)
+++..
T Consensus 81 a~~~~ 85 (316)
T 1ldn_A 81 CAGAN 85 (316)
T ss_dssp CCSCC
T ss_pred cCCCC
Confidence 97644
|
| >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00017 Score=71.05 Aligned_cols=84 Identities=14% Similarity=0.145 Sum_probs=58.9
Q ss_pred CEEEEEcccchHH-HHHHHHHhhhhhhcCCcEEE-EEecCChhhHHHHHH---cCceecCCCcCCHHhhcCc--CCEEEE
Q 014834 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARA---AGFTEENGTLGDIYETISG--SDLVLL 184 (417)
Q Consensus 112 kkIgIIG~G~mG~-AiA~~Lr~s~~~~~~G~~Vi-Vg~r~~s~s~~~A~~---~G~~~~~~~~~s~~Ea~~~--ADIViL 184 (417)
.||||||+|.||. .++..|+.. .+++|+ |.++. +..+.+.+ .|+.. ..+.+|++.+ .|+|++
T Consensus 3 ~rvgiiG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~--~~~~~a~~~~~~~~~~----~~~~~~ll~~~~~D~V~i 71 (349)
T 3i23_A 3 VKMGFIGFGKSANRYHLPYVMIR-----ETLEVKTIFDLH--VNEKAAAPFKEKGVNF----TADLNELLTDPEIELITI 71 (349)
T ss_dssp EEEEEECCSHHHHHTTHHHHTTC-----TTEEEEEEECTT--CCHHHHHHHHTTTCEE----ESCTHHHHSCTTCCEEEE
T ss_pred eEEEEEccCHHHHHHHHHHHhhC-----CCeEEEEEECCC--HHHHHHHhhCCCCCeE----ECCHHHHhcCCCCCEEEE
Confidence 5899999999998 577777654 156664 34443 44455555 45554 6789999876 899999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEE
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi 209 (417)
++|+..+.++..... +.|+-|.
T Consensus 72 ~tp~~~h~~~~~~al---~aGk~Vl 93 (349)
T 3i23_A 72 CTPAHTHYDLAKQAI---LAGKSVI 93 (349)
T ss_dssp CSCGGGHHHHHHHHH---HTTCEEE
T ss_pred eCCcHHHHHHHHHHH---HcCCEEE
Confidence 999999988776543 3455433
|
| >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.57 E-value=9e-05 Score=72.55 Aligned_cols=117 Identities=13% Similarity=0.237 Sum_probs=75.9
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcC--c-CCEEEEccC
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--G-SDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~--~-ADIViLavp 187 (417)
.+|.|+|+ |.||..++++|++. |++++....+...-. .-.|+.. ..+++|+.+ . .|++++++|
T Consensus 14 ~~vvV~Gasg~~G~~~~~~l~~~------g~~~v~~VnP~~~g~---~i~G~~v----y~sl~el~~~~~~~DvaIi~vp 80 (297)
T 2yv2_A 14 TRVLVQGITGREGSFHAKAMLEY------GTKVVAGVTPGKGGS---EVHGVPV----YDSVKEALAEHPEINTSIVFVP 80 (297)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTTCTTC---EETTEEE----ESSHHHHHHHCTTCCEEEECCC
T ss_pred CEEEEECCCCCHHHHHHHHHHhC------CCcEEEEeCCCCCCc---eECCEee----eCCHHHHhhcCCCCCEEEEecC
Confidence 46777898 99999999999998 888443443321000 1257765 678888876 5 999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchh
Q 014834 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPS 243 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~ 243 (417)
+....+++++.... .-..+|+++.||......+ ....-++..+..+.||++|-.
T Consensus 81 ~~~~~~~v~ea~~~-Gi~~vVi~t~G~~~~~~~~-l~~~A~~~gi~viGPNc~Gii 134 (297)
T 2yv2_A 81 APFAPDAVYEAVDA-GIRLVVVITEGIPVHDTMR-FVNYARQKGATIIGPNCPGAI 134 (297)
T ss_dssp GGGHHHHHHHHHHT-TCSEEEECCCCCCHHHHHH-HHHHHHHHTCEEECSSSCEEE
T ss_pred HHHHHHHHHHHHHC-CCCEEEEECCCCCHHHHHH-HHHHHHHcCCEEEcCCCCeeE
Confidence 99999999886553 2233667899996432111 001111223445567777654
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00026 Score=70.36 Aligned_cols=85 Identities=7% Similarity=0.035 Sum_probs=61.2
Q ss_pred CEEEEEcccchHH-HHHHHHHhhhhhhcCCcEEE-EEecCChhhHHHHHHcCceecCCCcCCHHhhcCc--CCEEEEccC
Q 014834 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~-AiA~~Lr~s~~~~~~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~--ADIViLavp 187 (417)
.||||||+|.+|. .++..++.. +++++ |.++..++..+.+++.|... ...+.+|++++ .|+|++++|
T Consensus 27 irvgiiG~G~~~~~~~~~~~~~~------~~~lvav~d~~~~~a~~~a~~~~~~~---~~~~~~~ll~~~~vD~V~I~tp 97 (361)
T 3u3x_A 27 LRFAAVGLNHNHIYGQVNCLLRA------GARLAGFHEKDDALAAEFSAVYADAR---RIATAEEILEDENIGLIVSAAV 97 (361)
T ss_dssp CEEEEECCCSTTHHHHHHHHHHT------TCEEEEEECSCHHHHHHHHHHSSSCC---EESCHHHHHTCTTCCEEEECCC
T ss_pred cEEEEECcCHHHHHHHHHHhhcC------CcEEEEEEcCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEEeCC
Confidence 5899999999994 567777766 77765 44454445556677777431 16789999875 899999999
Q ss_pred CchHHHHHHHHHhcCCCCcEE
Q 014834 188 DAAQADNYEKIFSCMKPNSIL 208 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~gaiL 208 (417)
+..+.++..... +.|+-|
T Consensus 98 ~~~H~~~~~~al---~aGkhV 115 (361)
T 3u3x_A 98 SSERAELAIRAM---QHGKDV 115 (361)
T ss_dssp HHHHHHHHHHHH---HTTCEE
T ss_pred hHHHHHHHHHHH---HCCCeE
Confidence 999988776543 345533
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.54 E-value=5.9e-05 Score=74.17 Aligned_cols=86 Identities=10% Similarity=0.103 Sum_probs=56.6
Q ss_pred CEEEEEcccchHHH-HHHHH-HhhhhhhcCCcEEE-EEecCChhhHHHHHHcCceecCCCcCCHHhhcCc--CCEEEEcc
Q 014834 112 NQIGVIGWGSQGPA-QAQNL-RDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~A-iA~~L-r~s~~~~~~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~--ADIViLav 186 (417)
.||||||+|.||.. ++.++ ... .+++++ |+++..++....+...|... ..+.+|++.+ .|+|++++
T Consensus 3 ~rvgiiG~G~~g~~~~~~~~~~~~-----~~~~l~av~d~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~D~V~i~t 73 (345)
T 3f4l_A 3 INCAFIGFGKSTTRYHLPYVLNRK-----DSWHVAHIFRRHAKPEEQAPIYSHIHF----TSDLDEVLNDPDVKLVVVCT 73 (345)
T ss_dssp EEEEEECCSHHHHHHTHHHHTTCT-----TTEEEEEEECSSCCGGGGSGGGTTCEE----ESCTHHHHTCTTEEEEEECS
T ss_pred eEEEEEecCHHHHHHHHHHHHhcC-----CCeEEEEEEcCCHhHHHHHHhcCCCce----ECCHHHHhcCCCCCEEEEcC
Confidence 68999999999986 45524 332 156665 45554433322222235554 5789999876 89999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEE
Q 014834 187 SDAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiLi 209 (417)
|+..+.++..... +.|+-|+
T Consensus 74 p~~~h~~~~~~al---~aGk~Vl 93 (345)
T 3f4l_A 74 HADSHFEYAKRAL---EAGKNVL 93 (345)
T ss_dssp CGGGHHHHHHHHH---HTTCEEE
T ss_pred ChHHHHHHHHHHH---HcCCcEE
Confidence 9999988776543 3566444
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0001 Score=71.44 Aligned_cols=68 Identities=21% Similarity=0.057 Sum_probs=55.3
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCC
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd 188 (417)
.| +++.|||.|-||.+++..|.+. |.+|.|.+|+.++..+.+ +.|+.. .+.+++ .++|+||.+||.
T Consensus 117 ~~-k~vlvlGaGGaaraia~~L~~~------G~~v~V~nRt~~ka~~la-~~~~~~-----~~~~~l-~~~DiVInaTp~ 182 (269)
T 3phh_A 117 NY-QNALILGAGGSAKALACELKKQ------GLQVSVLNRSSRGLDFFQ-RLGCDC-----FMEPPK-SAFDLIINATSA 182 (269)
T ss_dssp -C-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCTTHHHHH-HHTCEE-----ESSCCS-SCCSEEEECCTT
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHH-HCCCeE-----ecHHHh-ccCCEEEEcccC
Confidence 37 9999999999999999999998 888999999887777777 777653 234443 389999999996
Q ss_pred ch
Q 014834 189 AA 190 (417)
Q Consensus 189 ~~ 190 (417)
..
T Consensus 183 Gm 184 (269)
T 3phh_A 183 SL 184 (269)
T ss_dssp CC
T ss_pred CC
Confidence 53
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00037 Score=69.23 Aligned_cols=84 Identities=17% Similarity=0.225 Sum_probs=57.2
Q ss_pred CEEEEEcccchHHH-HHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHc-CceecCCCcCCHHhhcC--cCCEEEEccC
Q 014834 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETIS--GSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~A-iA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~-G~~~~~~~~~s~~Ea~~--~ADIViLavp 187 (417)
.||||||+|.||.. ++..|+.. .+++++...+.+.... +.+. +... ..+.+++++ +.|+|++++|
T Consensus 8 ~rvgiiG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~~~~~--~~~~~~~~~----~~~~~~ll~~~~~D~V~i~tp 76 (364)
T 3e82_A 8 INIALIGYGFVGKTFHAPLIRSV-----PGLNLAFVASRDEEKV--KRDLPDVTV----IASPEAAVQHPDVDLVVIASP 76 (364)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTS-----TTEEEEEEECSCHHHH--HHHCTTSEE----ESCHHHHHTCTTCSEEEECSC
T ss_pred ceEEEECCCHHHHHHHHHHHhhC-----CCeEEEEEEcCCHHHH--HhhCCCCcE----ECCHHHHhcCCCCCEEEEeCC
Confidence 58999999999997 77777764 1556643333333222 2333 4443 678999987 7899999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEE
Q 014834 188 DAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~gaiLi 209 (417)
+..+.++..... +.|+-|+
T Consensus 77 ~~~H~~~~~~al---~aGk~Vl 95 (364)
T 3e82_A 77 NATHAPLARLAL---NAGKHVV 95 (364)
T ss_dssp GGGHHHHHHHHH---HTTCEEE
T ss_pred hHHHHHHHHHHH---HCCCcEE
Confidence 999988776543 3465444
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00057 Score=67.05 Aligned_cols=90 Identities=14% Similarity=0.112 Sum_probs=57.5
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCh---hhHHHHHHc--CceecCCCcCCHHhhcCcCCEEE
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGS---RSFAEARAA--GFTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s---~s~~~A~~~--G~~~~~~~~~s~~Ea~~~ADIVi 183 (417)
++||+|||.|+||..++..|... |+ +|.+.+...+ ...+...-. .+.. ..+. +++++||+||
T Consensus 14 ~~kV~ViGaG~vG~~~a~~l~~~------g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~----t~d~-~~l~~aD~Vi 82 (303)
T 2i6t_A 14 VNKITVVGGGELGIACTLAISAK------GIADRLVLLDLSEGTKGATMDLEIFNLPNVEI----SKDL-SASAHSKVVI 82 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECCC-----CHHHHHHHTCTTEEE----ESCG-GGGTTCSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEcCCcchHHHHHHHhhhcCCCeEE----eCCH-HHHCCCCEEE
Confidence 48999999999999999999988 77 7877766532 222222211 1221 2566 7789999999
Q ss_pred EccCCch---------------HHHHHHHHHhcCCCCcEEEEec
Q 014834 184 LLISDAA---------------QADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 184 Lavpd~~---------------~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
++..... ..++++++..+- |+.+|++++
T Consensus 83 ~aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~s 125 (303)
T 2i6t_A 83 FTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYS-QHSVLLVAS 125 (303)
T ss_dssp ECCCC----CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEECS
T ss_pred EcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcC
Confidence 9972211 234555566554 777665443
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00065 Score=66.44 Aligned_cols=67 Identities=15% Similarity=0.155 Sum_probs=45.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHH--cC-------ceecCCCcCCHHhhcCcCCE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA--AG-------FTEENGTLGDIYETISGSDL 181 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~--~G-------~~~~~~~~~s~~Ea~~~ADI 181 (417)
+||+|||.|.||.+++..|... |+ +|.+.+.+.++....+.+ .+ ... ..+.+. +++++||+
T Consensus 3 ~kI~VIGaG~vG~~~a~~la~~------g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i--~~t~d~-~a~~~aD~ 73 (309)
T 1ur5_A 3 KKISIIGAGFVGSTTAHWLAAK------ELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRV--TGTNNY-ADTANSDV 73 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCE--EEESCG-GGGTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEE--EECCCH-HHHCCCCE
Confidence 6999999999999999999888 86 866665544332221221 11 111 002456 78999999
Q ss_pred EEEccC
Q 014834 182 VLLLIS 187 (417)
Q Consensus 182 ViLavp 187 (417)
||+++.
T Consensus 74 Vi~a~g 79 (309)
T 1ur5_A 74 IVVTSG 79 (309)
T ss_dssp EEECCC
T ss_pred EEEcCC
Confidence 999974
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00035 Score=69.18 Aligned_cols=83 Identities=11% Similarity=0.202 Sum_probs=57.4
Q ss_pred CEEEEEcccchHHH-HHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHc-CceecCCCcCCHHhhcC--cCCEEEEccC
Q 014834 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETIS--GSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~A-iA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~-G~~~~~~~~~s~~Ea~~--~ADIViLavp 187 (417)
.||||||+|.||.. ++..|+.. .+++++...+.+.. +.+.+. +... ..+.+++++ +.|+|++++|
T Consensus 6 ~rvgiiG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~~~--~~~~~~~~~~~----~~~~~~ll~~~~vD~V~i~tp 74 (358)
T 3gdo_A 6 IKVGILGYGLSGSVFHGPLLDVL-----DEYQISKIMTSRTE--EVKRDFPDAEV----VHELEEITNDPAIELVIVTTP 74 (358)
T ss_dssp EEEEEECCSHHHHHTTHHHHTTC-----TTEEEEEEECSCHH--HHHHHCTTSEE----ESSTHHHHTCTTCCEEEECSC
T ss_pred ceEEEEccCHHHHHHHHHHHhhC-----CCeEEEEEEcCCHH--HHHhhCCCCce----ECCHHHHhcCCCCCEEEEcCC
Confidence 58999999999997 77777654 15666433333332 244455 4443 578999987 7899999999
Q ss_pred CchHHHHHHHHHhcCCCCcEE
Q 014834 188 DAAQADNYEKIFSCMKPNSIL 208 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~gaiL 208 (417)
+..+.++..... +.|+-|
T Consensus 75 ~~~H~~~~~~al---~aGkhV 92 (358)
T 3gdo_A 75 SGLHYEHTMACI---QAGKHV 92 (358)
T ss_dssp TTTHHHHHHHHH---HTTCEE
T ss_pred cHHHHHHHHHHH---HcCCeE
Confidence 999988776543 345533
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00047 Score=70.36 Aligned_cols=78 Identities=14% Similarity=0.123 Sum_probs=55.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEE-EEecCChhhHHHHH---HcCc---eecCCCcC----CHHhhcC--c
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEAR---AAGF---TEENGTLG----DIYETIS--G 178 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vi-Vg~r~~s~s~~~A~---~~G~---~~~~~~~~----s~~Ea~~--~ 178 (417)
.||||||+|.||..++.+|+.. .+++++ |.++..++..+.++ +.|+ .. .. +.+|+++ +
T Consensus 21 ~rvgiIG~G~~g~~h~~~l~~~-----~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~----~~~~~~~~~~ll~~~~ 91 (444)
T 2ixa_A 21 VRIAFIAVGLRGQTHVENMARR-----DDVEIVAFADPDPYMVGRAQEILKKNGKKPAKV----FGNGNDDYKNMLKDKN 91 (444)
T ss_dssp EEEEEECCSHHHHHHHHHHHTC-----TTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEE----ECSSTTTHHHHTTCTT
T ss_pred ceEEEEecCHHHHHHHHHHHhC-----CCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCce----eccCCCCHHHHhcCCC
Confidence 5899999999999999998864 156654 44444333333333 3463 32 45 8999987 5
Q ss_pred CCEEEEccCCchHHHHHHHH
Q 014834 179 SDLVLLLISDAAQADNYEKI 198 (417)
Q Consensus 179 ADIViLavpd~~~~~Vl~eI 198 (417)
.|+|++++|+..+.++....
T Consensus 92 vD~V~i~tp~~~h~~~~~~a 111 (444)
T 2ixa_A 92 IDAVFVSSPWEWHHEHGVAA 111 (444)
T ss_dssp CCEEEECCCGGGHHHHHHHH
T ss_pred CCEEEEcCCcHHHHHHHHHH
Confidence 89999999999998877653
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0006 Score=69.61 Aligned_cols=94 Identities=14% Similarity=0.183 Sum_probs=65.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCH---Hhh-cCcCCEEEEccC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI---YET-ISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~---~Ea-~~~ADIViLavp 187 (417)
++|.|||+|.+|..+++.|+.. |++|++.+++ ....+.+++.|+....|...+. .++ +.+||+||++++
T Consensus 5 ~~viIiG~Gr~G~~va~~L~~~------g~~vvvId~d-~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~ 77 (413)
T 3l9w_A 5 MRVIIAGFGRFGQITGRLLLSS------GVKMVVLDHD-PDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAID 77 (413)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT------TCCEEEEECC-HHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCS
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCCEEEEECC-HHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCC
Confidence 6799999999999999999999 9998776655 4556777778875432222332 233 789999999999
Q ss_pred CchHHHHHHHHHhcCCCC-cEEEEec
Q 014834 188 DAAQADNYEKIFSCMKPN-SILGLSH 212 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~g-aiLi~a~ 212 (417)
+......+-.....+.|+ .+|+-+.
T Consensus 78 ~~~~n~~i~~~ar~~~p~~~Iiara~ 103 (413)
T 3l9w_A 78 DPQTNLQLTEMVKEHFPHLQIIARAR 103 (413)
T ss_dssp SHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred ChHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 876654444444445555 4555444
|
| >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00026 Score=70.28 Aligned_cols=86 Identities=12% Similarity=0.083 Sum_probs=63.9
Q ss_pred CEEEEEc-ccchHHH-HH----HHHHhhhhhhcCC-cE----------EEEEecCChhhHHHHHHcCceecCCCcCCHHh
Q 014834 112 NQIGVIG-WGSQGPA-QA----QNLRDSLAEAKSD-IV----------VKVGLRKGSRSFAEARAAGFTEENGTLGDIYE 174 (417)
Q Consensus 112 kkIgIIG-~G~mG~A-iA----~~Lr~s~~~~~~G-~~----------ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~E 174 (417)
.|||||| +|.||.. ++ ..+++. + +. +.+.++..++..+.+++.|+.. ...+.+|
T Consensus 7 irigiiG~~G~~g~~~h~~~~~~~~~~~------~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~~~---~~~~~~~ 77 (383)
T 3oqb_A 7 LGLIMNGVTGRMGLNQHLIRSIVAIRDQ------GGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNIAR---WTTDLDA 77 (383)
T ss_dssp EEEEEESTTSTHHHHTTTTTTHHHHHHH------TSEECTTSCEEEEEEEEECSSSHHHHHHHHHTTCCC---EESCHHH
T ss_pred eEEEEEeccchhhhhhhHHHHHHHHhhc------CceeecCCcccceeeEEEcCCHHHHHHHHHHhCCCc---ccCCHHH
Confidence 4799999 9999998 77 777766 3 22 1366777677777888888842 1578999
Q ss_pred hcCc--CCEEEEccCCchHHHHHHHHHhcCCCCcEEE
Q 014834 175 TISG--SDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 175 a~~~--ADIViLavpd~~~~~Vl~eI~~~lk~gaiLi 209 (417)
++++ .|+|++++|+..+.++.... |+.|+-|.
T Consensus 78 ll~~~~iD~V~i~tp~~~h~~~~~~a---l~~Gk~V~ 111 (383)
T 3oqb_A 78 ALADKNDTMFFDAATTQARPGLLTQA---INAGKHVY 111 (383)
T ss_dssp HHHCSSCCEEEECSCSSSSHHHHHHH---HTTTCEEE
T ss_pred HhcCCCCCEEEECCCchHHHHHHHHH---HHCCCeEE
Confidence 8865 89999999999998877554 34566444
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00076 Score=65.95 Aligned_cols=67 Identities=16% Similarity=0.127 Sum_probs=46.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhH----HHHHH---cC--ceecCCCcCCHHhhcCcCC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSF----AEARA---AG--FTEENGTLGDIYETISGSD 180 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~----~~A~~---~G--~~~~~~~~~s~~Ea~~~AD 180 (417)
|||+|||.|++|.++|..|... |+ +|.+.++..++.. +.... .+ ... ....+ .+++++||
T Consensus 1 MkI~ViGaG~vG~~la~~l~~~------~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i--~~t~d-~~a~~~aD 71 (294)
T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLLN------LDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKI--VGGAD-YSLLKGSE 71 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------SCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEE--EEESC-GGGGTTCS
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEE--EEeCC-HHHhCCCC
Confidence 5899999999999999999988 87 7877776543321 11111 11 111 00235 78999999
Q ss_pred EEEEccC
Q 014834 181 LVLLLIS 187 (417)
Q Consensus 181 IViLavp 187 (417)
+||++..
T Consensus 72 iVViaag 78 (294)
T 1oju_A 72 IIVVTAG 78 (294)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 9999864
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00039 Score=68.50 Aligned_cols=84 Identities=10% Similarity=0.147 Sum_probs=55.6
Q ss_pred CEEEEEcccchHHH-HHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCc--CCEEEEccCC
Q 014834 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~A-iA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~--ADIViLavpd 188 (417)
.||||||+|.||.. ++..|++. .+++++...+.+....+ +...+... ..+.+|++.+ .|+|++++|+
T Consensus 8 ~rvgiiG~G~~g~~~~~~~~~~~-----~~~~l~av~d~~~~~~~-~~~~~~~~----~~~~~~ll~~~~vD~V~i~tp~ 77 (352)
T 3kux_A 8 IKVGLLGYGYASKTFHAPLIMGT-----PGLELAGVSSSDASKVH-ADWPAIPV----VSDPQMLFNDPSIDLIVIPTPN 77 (352)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTS-----TTEEEEEEECSCHHHHH-TTCSSCCE----ESCHHHHHHCSSCCEEEECSCT
T ss_pred ceEEEECCCHHHHHHHHHHHhhC-----CCcEEEEEECCCHHHHH-hhCCCCce----ECCHHHHhcCCCCCEEEEeCCh
Confidence 58999999999997 78888764 14565433333222221 11123332 5789998865 8999999999
Q ss_pred chHHHHHHHHHhcCCCCcEE
Q 014834 189 AAQADNYEKIFSCMKPNSIL 208 (417)
Q Consensus 189 ~~~~~Vl~eI~~~lk~gaiL 208 (417)
..+.++..... +.|+-|
T Consensus 78 ~~H~~~~~~al---~aGkhV 94 (352)
T 3kux_A 78 DTHFPLAQSAL---AAGKHV 94 (352)
T ss_dssp TTHHHHHHHHH---HTTCEE
T ss_pred HHHHHHHHHHH---HCCCcE
Confidence 99988776543 345533
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00023 Score=73.78 Aligned_cols=83 Identities=7% Similarity=0.106 Sum_probs=60.0
Q ss_pred CEEEEEcc----cchHHHHHHHHHhhhhhhcCCcEEE-EEecCChhhHHHHHHcCceecCCCcCCHHhhcC--cCCEEEE
Q 014834 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~----G~mG~AiA~~Lr~s~~~~~~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~--~ADIViL 184 (417)
.+|||||+ |.||..++.+|+.. ..+++++ |.++..++..+.+.+.|+.. .....+.+|+++ +.|+|++
T Consensus 40 irvgiIG~g~~GG~~g~~h~~~l~~~----~~~~~lvav~d~~~~~a~~~a~~~g~~~-~~~~~d~~ell~~~~vD~V~I 114 (479)
T 2nvw_A 40 IRVGFVGLTSGKSWVAKTHFLAIQQL----SSQFQIVALYNPTLKSSLQTIEQLQLKH-ATGFDSLESFAQYKDIDMIVV 114 (479)
T ss_dssp EEEEEECCCSTTSHHHHTHHHHHHHT----TTTEEEEEEECSCHHHHHHHHHHTTCTT-CEEESCHHHHHHCTTCSEEEE
T ss_pred CEEEEEcccCCCCHHHHHHHHHHHhc----CCCeEEEEEEeCCHHHHHHHHHHcCCCc-ceeeCCHHHHhcCCCCCEEEE
Confidence 68999999 99999999999863 0156654 44555445556677778640 011678999885 6899999
Q ss_pred ccCCchHHHHHHHHH
Q 014834 185 LISDAAQADNYEKIF 199 (417)
Q Consensus 185 avpd~~~~~Vl~eI~ 199 (417)
++|+..+.++....+
T Consensus 115 ~tp~~~H~~~~~~al 129 (479)
T 2nvw_A 115 SVKVPEHYEVVKNIL 129 (479)
T ss_dssp CSCHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHH
Confidence 999999988776543
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00029 Score=69.72 Aligned_cols=76 Identities=12% Similarity=0.140 Sum_probs=54.4
Q ss_pred CEEEEEcccchHHH-HHHHHHhhhhhhcCCcEEE-EEecCChhhHHHHHHc-CceecCCCcCCHHhhcCc--CCEEEEcc
Q 014834 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAA-GFTEENGTLGDIYETISG--SDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~A-iA~~Lr~s~~~~~~G~~Vi-Vg~r~~s~s~~~A~~~-G~~~~~~~~~s~~Ea~~~--ADIViLav 186 (417)
.||||||+|.||.. ++..|+.. .+++++ |.++..++ .+.+. +... ..+.+|++++ .|+|++++
T Consensus 6 ~rvgiiG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~~~~---~~~~~~~~~~----~~~~~~ll~~~~vD~V~i~t 73 (362)
T 3fhl_A 6 IKTGLAAFGMSGQVFHAPFISTN-----PHFELYKIVERSKEL---SKERYPQASI----VRSFKELTEDPEIDLIVVNT 73 (362)
T ss_dssp EEEEESCCSHHHHHTTHHHHHHC-----TTEEEEEEECSSCCG---GGTTCTTSEE----ESCSHHHHTCTTCCEEEECS
T ss_pred eEEEEECCCHHHHHHHHHHHhhC-----CCeEEEEEEcCCHHH---HHHhCCCCce----ECCHHHHhcCCCCCEEEEeC
Confidence 58999999999997 77777664 155654 34444332 33444 4443 6789999876 89999999
Q ss_pred CCchHHHHHHHHH
Q 014834 187 SDAAQADNYEKIF 199 (417)
Q Consensus 187 pd~~~~~Vl~eI~ 199 (417)
|+..+.++.....
T Consensus 74 p~~~H~~~~~~al 86 (362)
T 3fhl_A 74 PDNTHYEYAGMAL 86 (362)
T ss_dssp CGGGHHHHHHHHH
T ss_pred ChHHHHHHHHHHH
Confidence 9999988776543
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0012 Score=65.51 Aligned_cols=72 Identities=19% Similarity=0.157 Sum_probs=47.8
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhH----HHHHH-----cCceecCCCcCCHHhh
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSF----AEARA-----AGFTEENGTLGDIYET 175 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~----~~A~~-----~G~~~~~~~~~s~~Ea 175 (417)
..++. +||+|||.|.||.++|..|... |+ +|.+.++..++.. +.... ...... ...+. ++
T Consensus 3 ~~m~~-~kI~viGaG~vG~~~a~~l~~~------~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~--~t~d~-~a 72 (324)
T 3gvi_A 3 GSMAR-NKIALIGSGMIGGTLAHLAGLK------ELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFT--GANDY-AA 72 (324)
T ss_dssp ---CC-CEEEEECCSHHHHHHHHHHHHT------TCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEE--EESSG-GG
T ss_pred CCCcC-CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEE--EeCCH-HH
Confidence 44555 8999999999999999999988 77 8887776654332 11111 111110 02344 88
Q ss_pred cCcCCEEEEccC
Q 014834 176 ISGSDLVLLLIS 187 (417)
Q Consensus 176 ~~~ADIViLavp 187 (417)
+++||+||++..
T Consensus 73 ~~~aDiVIiaag 84 (324)
T 3gvi_A 73 IEGADVVIVTAG 84 (324)
T ss_dssp GTTCSEEEECCS
T ss_pred HCCCCEEEEccC
Confidence 999999999964
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00073 Score=66.48 Aligned_cols=89 Identities=12% Similarity=0.193 Sum_probs=55.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhHHHHHH--cCc------eecCCCcCCHHhhcCcCCE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AGF------TEENGTLGDIYETISGSDL 181 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~~~A~~--~G~------~~~~~~~~s~~Ea~~~ADI 181 (417)
+||+|||.|++|.+++..|... |+ +|.+.+....+....+.+ .+. .. ..+..+++++||+
T Consensus 8 ~KI~IiGaG~vG~~~a~~l~~~------~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i----~~~~~~a~~~aDv 77 (318)
T 1y6j_A 8 SKVAIIGAGFVGASAAFTMALR------QTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSL----YAGDYSDVKDCDV 77 (318)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEE----C--CGGGGTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEE----EECCHHHhCCCCE
Confidence 6899999999999999999988 76 777666553332222222 221 11 1123677999999
Q ss_pred EEEccCCch----------------HHHHHHHHHhcCCCCcEEEEe
Q 014834 182 VLLLISDAA----------------QADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 182 ViLavpd~~----------------~~~Vl~eI~~~lk~gaiLi~a 211 (417)
||++++... ..++.+.|.++ .|+.+|++.
T Consensus 78 Vii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~ 122 (318)
T 1y6j_A 78 IVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKY-YNHGVILVV 122 (318)
T ss_dssp EEECCCC------CHHHHHHHHHHHHHHHHHHHHHH-CCSCEEEEC
T ss_pred EEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEEe
Confidence 999987432 12344455555 577776654
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00024 Score=71.60 Aligned_cols=86 Identities=9% Similarity=0.071 Sum_probs=62.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEE-EEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~ 190 (417)
.||+|||+| +|...+..+++. ..+++++ |.++..++..+.|++.|+.. ..|.++++.+.|+|+++||+..
T Consensus 8 ~rv~VvG~G-~g~~h~~a~~~~----~~~~elvav~~~~~~~a~~~a~~~gv~~----~~~~~~l~~~~D~v~i~~p~~~ 78 (372)
T 4gmf_A 8 QRVLIVGAK-FGEMYLNAFMQP----PEGLELVGLLAQGSARSRELAHAFGIPL----YTSPEQITGMPDIACIVVRSTV 78 (372)
T ss_dssp EEEEEECST-TTHHHHHTTSSC----CTTEEEEEEECCSSHHHHHHHHHTTCCE----ESSGGGCCSCCSEEEECCC--C
T ss_pred CEEEEEehH-HHHHHHHHHHhC----CCCeEEEEEECCCHHHHHHHHHHhCCCE----ECCHHHHhcCCCEEEEECCCcc
Confidence 589999999 799888887764 1145654 45666677888899999875 6899999999999999999887
Q ss_pred H----HHHHHHHHhcCCCCcEEE
Q 014834 191 Q----ADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 191 ~----~~Vl~eI~~~lk~gaiLi 209 (417)
+ .++... .|+.|+-|.
T Consensus 79 h~~~~~~~a~~---al~aGkhVl 98 (372)
T 4gmf_A 79 AGGAGTQLARH---FLARGVHVI 98 (372)
T ss_dssp TTSHHHHHHHH---HHHTTCEEE
T ss_pred cchhHHHHHHH---HHHcCCcEE
Confidence 6 344433 344566443
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00013 Score=68.61 Aligned_cols=80 Identities=13% Similarity=0.285 Sum_probs=51.7
Q ss_pred CEEEEEcccchHHHHHHH--HHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCc
Q 014834 112 NQIGVIGWGSQGPAQAQN--LRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~--Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~ 189 (417)
++|+|||+|++|.++++. .... |++++...+.+...... .-.|+.+. ...++++++++.|+|++++|+.
T Consensus 86 ~rV~IIGAG~~G~~La~~~~~~~~------g~~iVg~~D~dp~k~g~-~i~gv~V~--~~~dl~eli~~~D~ViIAvPs~ 156 (215)
T 2vt3_A 86 TDVILIGVGNLGTAFLHYNFTKNN------NTKISMAFDINESKIGT-EVGGVPVY--NLDDLEQHVKDESVAILTVPAV 156 (215)
T ss_dssp -CEEEECCSHHHHHHHHCC------------CCEEEEEESCTTTTTC-EETTEEEE--EGGGHHHHCSSCCEEEECSCHH
T ss_pred CEEEEEccCHHHHHHHHHHhcccC------CcEEEEEEeCCHHHHHh-HhcCCeee--chhhHHHHHHhCCEEEEecCch
Confidence 689999999999999994 3334 77766555544332211 11343321 1457888887779999999998
Q ss_pred hHHHHHHHHHh
Q 014834 190 AQADNYEKIFS 200 (417)
Q Consensus 190 ~~~~Vl~eI~~ 200 (417)
.+.++.+.+..
T Consensus 157 ~~~ei~~~l~~ 167 (215)
T 2vt3_A 157 AAQSITDRLVA 167 (215)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 88888877654
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0003 Score=71.85 Aligned_cols=82 Identities=13% Similarity=0.143 Sum_probs=59.1
Q ss_pred CEEEEEcc----cchHHHHHHHHHhhhhhhcCCcEEE-EEecCChhhHHHHHHcCceecCCCcCCHHhhcC--cCCEEEE
Q 014834 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~----G~mG~AiA~~Lr~s~~~~~~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~--~ADIViL 184 (417)
.||||||+ |.||..++.+|++. ..+++++ |.++..++..+.+++.|+.. .....+.+|+++ +.|+|++
T Consensus 21 irvgiIG~g~~gG~~g~~~~~~l~~~----~~~~~lvav~d~~~~~~~~~a~~~g~~~-~~~~~~~~~ll~~~~vD~V~i 95 (438)
T 3btv_A 21 IRVGFVGLNAAKGWAIKTHYPAILQL----SSQFQITALYSPKIETSIATIQRLKLSN-ATAFPTLESFASSSTIDMIVI 95 (438)
T ss_dssp EEEEEESCCTTSSSTTTTHHHHHHHT----TTTEEEEEEECSSHHHHHHHHHHTTCTT-CEEESSHHHHHHCSSCSEEEE
T ss_pred CEEEEEcccCCCChHHHHHHHHHHhc----CCCeEEEEEEeCCHHHHHHHHHHcCCCc-ceeeCCHHHHhcCCCCCEEEE
Confidence 58999999 99999999999863 0156654 44554444456667777640 001578999886 6899999
Q ss_pred ccCCchHHHHHHHH
Q 014834 185 LISDAAQADNYEKI 198 (417)
Q Consensus 185 avpd~~~~~Vl~eI 198 (417)
++|+..+.++....
T Consensus 96 ~tp~~~H~~~~~~a 109 (438)
T 3btv_A 96 AIQVASHYEVVMPL 109 (438)
T ss_dssp CSCHHHHHHHHHHH
T ss_pred eCCcHHHHHHHHHH
Confidence 99999998877653
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0012 Score=65.17 Aligned_cols=67 Identities=18% Similarity=0.153 Sum_probs=46.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHH--c-------CceecCCCcCCHHhhcCcCCE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA--A-------GFTEENGTLGDIYETISGSDL 181 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~--~-------G~~~~~~~~~s~~Ea~~~ADI 181 (417)
+||+|||.|.||.++|..|... |+ +|.+.+....+....+.+ . .... ...+..+++++||+
T Consensus 6 ~kI~iiGaG~vG~~~a~~l~~~------~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v---~~t~d~~a~~~aDv 76 (321)
T 3p7m_A 6 KKITLVGAGNIGGTLAHLALIK------QLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKV---RGTNDYKDLENSDV 76 (321)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCE---EEESCGGGGTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEE---EEcCCHHHHCCCCE
Confidence 8999999999999999999988 76 887777665433222211 1 1111 01123578999999
Q ss_pred EEEccC
Q 014834 182 VLLLIS 187 (417)
Q Consensus 182 ViLavp 187 (417)
||++..
T Consensus 77 VIi~ag 82 (321)
T 3p7m_A 77 VIVTAG 82 (321)
T ss_dssp EEECCS
T ss_pred EEEcCC
Confidence 999964
|
| >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00045 Score=67.60 Aligned_cols=79 Identities=10% Similarity=0.062 Sum_probs=54.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEE-EecCC-hhh---HHHHHHcCceecCCCcCCHHhhcCc--CCEEEE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKG-SRS---FAEARAAGFTEENGTLGDIYETISG--SDLVLL 184 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViV-g~r~~-s~s---~~~A~~~G~~~~~~~~~s~~Ea~~~--ADIViL 184 (417)
.||||||+|.+|..++..| .. +++++. .++.. .+. .+.+.+.|+.. ....|.+|++++ .|+|++
T Consensus 3 ~rvgiiG~G~~~~~~~~~l-~~------~~~lvav~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ll~~~~vD~V~I 73 (337)
T 3ip3_A 3 LKICVIGSSGHFRYALEGL-DE------ECSITGIAPGVPEEDLSKLEKAISEMNIKP--KKYNNWWEMLEKEKPDILVI 73 (337)
T ss_dssp EEEEEECSSSCHHHHHTTC-CT------TEEEEEEECSSTTCCCHHHHHHHHTTTCCC--EECSSHHHHHHHHCCSEEEE
T ss_pred eEEEEEccchhHHHHHHhc-CC------CcEEEEEecCCchhhHHHHHHHHHHcCCCC--cccCCHHHHhcCCCCCEEEE
Confidence 6999999999999888777 44 677653 34332 122 22333446521 126789998864 899999
Q ss_pred ccCCchHHHHHHHHH
Q 014834 185 LISDAAQADNYEKIF 199 (417)
Q Consensus 185 avpd~~~~~Vl~eI~ 199 (417)
++|+..+.++.....
T Consensus 74 ~tp~~~H~~~~~~al 88 (337)
T 3ip3_A 74 NTVFSLNGKILLEAL 88 (337)
T ss_dssp CSSHHHHHHHHHHHH
T ss_pred eCCcchHHHHHHHHH
Confidence 999999988776543
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00037 Score=67.72 Aligned_cols=77 Identities=19% Similarity=0.089 Sum_probs=57.1
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcC-----ceecCCCcCCHHhhcCcCC
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG-----FTEENGTLGDIYETISGSD 180 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G-----~~~~~~~~~s~~Ea~~~AD 180 (417)
.++| +++.|+|.|-+|.+++..|.+. |. +|.|.+|+.++..+.+.+.+ +....-...+..+.++++|
T Consensus 124 ~l~~-k~vlVlGaGG~g~aia~~L~~~------G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~D 196 (283)
T 3jyo_A 124 NAKL-DSVVQVGAGGVGNAVAYALVTH------GVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAAD 196 (283)
T ss_dssp TCCC-SEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSS
T ss_pred CcCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCC
Confidence 4678 9999999999999999999998 98 79999988666555554432 1110000236778888999
Q ss_pred EEEEccCCch
Q 014834 181 LVLLLISDAA 190 (417)
Q Consensus 181 IViLavpd~~ 190 (417)
+||.+||...
T Consensus 197 iVInaTp~Gm 206 (283)
T 3jyo_A 197 GVVNATPMGM 206 (283)
T ss_dssp EEEECSSTTS
T ss_pred EEEECCCCCC
Confidence 9999999644
|
| >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00028 Score=68.18 Aligned_cols=83 Identities=12% Similarity=0.197 Sum_probs=55.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEE-EEecCChhhHHHHHHcCceecCCCcCCHHhhcC--cCCEEEEccCC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~--~ADIViLavpd 188 (417)
.||||||+|.||..++.+|.... ...+++++ +.+++. .+.+.|+. ..+.+|+++ +.|+|++++|+
T Consensus 8 ~rvgiIG~G~iG~~~~~~l~~~~--~~~~~~lvav~d~~~-----~a~~~g~~-----~~~~~ell~~~~vD~V~i~tp~ 75 (294)
T 1lc0_A 8 FGVVVVGVGRAGSVRLRDLKDPR--SAAFLNLIGFVSRRE-----LGSLDEVR-----QISLEDALRSQEIDVAYICSES 75 (294)
T ss_dssp EEEEEECCSHHHHHHHHHHTSHH--HHTTEEEEEEECSSC-----CCEETTEE-----BCCHHHHHHCSSEEEEEECSCG
T ss_pred ceEEEEEEcHHHHHHHHHHhccc--cCCCEEEEEEECchH-----HHHHcCCC-----CCCHHHHhcCCCCCEEEEeCCc
Confidence 58999999999999999987520 00145544 333321 12334554 368899886 68999999999
Q ss_pred chHHHHHHHHHhcCCCCc-EEE
Q 014834 189 AAQADNYEKIFSCMKPNS-ILG 209 (417)
Q Consensus 189 ~~~~~Vl~eI~~~lk~ga-iLi 209 (417)
..+.++..... +.|+ +++
T Consensus 76 ~~H~~~~~~al---~aGkhVl~ 94 (294)
T 1lc0_A 76 SSHEDYIRQFL---QAGKHVLV 94 (294)
T ss_dssp GGHHHHHHHHH---HTTCEEEE
T ss_pred HhHHHHHHHHH---HCCCcEEE
Confidence 99987776543 3466 444
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00011 Score=73.04 Aligned_cols=96 Identities=13% Similarity=0.078 Sum_probs=65.6
Q ss_pred hccCCCEEEEEcccch-HHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCC----c--CCHHhhcCcC
Q 014834 107 AFNGINQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT----L--GDIYETISGS 179 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~m-G~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~----~--~s~~Ea~~~A 179 (417)
.++| +++.|||.|.| |..+|+.|... |..|.+.+|+..+.++.+.+.+......+ + .++++.+++|
T Consensus 174 ~l~g-k~vvVIG~G~iVG~~~A~~L~~~------gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~A 246 (320)
T 1edz_A 174 RLYG-KKCIVINRSEIVGRPLAALLAND------GATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDS 246 (320)
T ss_dssp TTTT-CEEEEECCCTTTHHHHHHHHHTT------SCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHC
T ss_pred CCCC-CEEEEECCCcchHHHHHHHHHHC------CCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccC
Confidence 6788 99999999976 99999999988 88998887764333333333332110000 1 3578899999
Q ss_pred CEEEEccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 014834 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 180 DIViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~G 213 (417)
|+||.+++-... ++. ...+++|.+|++.+-
T Consensus 247 DIVIsAtg~p~~--vI~--~e~vk~GavVIDVgi 276 (320)
T 1edz_A 247 DVVITGVPSENY--KFP--TEYIKEGAVCINFAC 276 (320)
T ss_dssp SEEEECCCCTTC--CBC--TTTSCTTEEEEECSS
T ss_pred CEEEECCCCCcc--eeC--HHHcCCCeEEEEcCC
Confidence 999999985321 011 234689988887753
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00023 Score=69.40 Aligned_cols=71 Identities=15% Similarity=0.148 Sum_probs=52.8
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
.++| +++.|||.|-+|.+++..|.+. |. +|.|.+|+.++..+.+.+.+... ..+..+ + ++|+||.+
T Consensus 119 ~~~~-k~vlvlGaGGaaraia~~L~~~------G~~~v~v~nRt~~ka~~La~~~~~~~----~~~l~~-l-~~DivIna 185 (282)
T 3fbt_A 119 EIKN-NICVVLGSGGAARAVLQYLKDN------FAKDIYVVTRNPEKTSEIYGEFKVIS----YDELSN-L-KGDVIINC 185 (282)
T ss_dssp CCTT-SEEEEECSSTTHHHHHHHHHHT------TCSEEEEEESCHHHHHHHCTTSEEEE----HHHHTT-C-CCSEEEEC
T ss_pred CccC-CEEEEECCcHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHhcCccc----HHHHHh-c-cCCEEEEC
Confidence 3578 9999999999999999999998 98 89999987655545544332221 223344 4 89999999
Q ss_pred cCCch
Q 014834 186 ISDAA 190 (417)
Q Consensus 186 vpd~~ 190 (417)
||...
T Consensus 186 Tp~Gm 190 (282)
T 3fbt_A 186 TPKGM 190 (282)
T ss_dssp SSTTS
T ss_pred CccCc
Confidence 98643
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0006 Score=67.71 Aligned_cols=77 Identities=16% Similarity=0.203 Sum_probs=53.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcC---CHHhhcCcCCEEEEccCC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETISGSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~---s~~Ea~~~ADIViLavpd 188 (417)
|||.|||+|.+|..++..|.+ ..+|.++++.. +..+.+.+..-.. .-.+. ++.++++++|+||.++|+
T Consensus 17 mkilvlGaG~vG~~~~~~L~~-------~~~v~~~~~~~-~~~~~~~~~~~~~-~~d~~d~~~l~~~~~~~DvVi~~~p~ 87 (365)
T 3abi_A 17 MKVLILGAGNIGRAIAWDLKD-------EFDVYIGDVNN-ENLEKVKEFATPL-KVDASNFDKLVEVMKEFELVIGALPG 87 (365)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-------TSEEEEEESCH-HHHHHHTTTSEEE-ECCTTCHHHHHHHHTTCSEEEECCCG
T ss_pred cEEEEECCCHHHHHHHHHHhc-------CCCeEEEEcCH-HHHHHHhccCCcE-EEecCCHHHHHHHHhCCCEEEEecCC
Confidence 589999999999999999875 45788877753 3344443322111 00022 355778999999999999
Q ss_pred chHHHHHHH
Q 014834 189 AAQADNYEK 197 (417)
Q Consensus 189 ~~~~~Vl~e 197 (417)
.....+.+.
T Consensus 88 ~~~~~v~~~ 96 (365)
T 3abi_A 88 FLGFKSIKA 96 (365)
T ss_dssp GGHHHHHHH
T ss_pred cccchHHHH
Confidence 987777764
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0011 Score=65.38 Aligned_cols=94 Identities=18% Similarity=0.149 Sum_probs=62.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEE-EecCChh-hHHHHHHcCceecCCCcCCHHhhc-----CcCCEEEE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKGSR-SFAEARAAGFTEENGTLGDIYETI-----SGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViV-g~r~~s~-s~~~A~~~G~~~~~~~~~s~~Ea~-----~~ADIViL 184 (417)
.||||||+|.+|..+++.|.+.. .+.+++. .++..++ ..+.+++.|+... ..+.++++ .+.|+|++
T Consensus 5 irVaIIG~G~iG~~~~~~l~~~~----~~~elvav~d~~~~~~~~~~a~~~g~~~~---~~~~e~ll~~~~~~~iDvV~~ 77 (312)
T 1nvm_B 5 LKVAIIGSGNIGTDLMIKVLRNA----KYLEMGAMVGIDAASDGLARAQRMGVTTT---YAGVEGLIKLPEFADIDFVFD 77 (312)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHC----SSEEEEEEECSCTTCHHHHHHHHTTCCEE---SSHHHHHHHSGGGGGEEEEEE
T ss_pred CEEEEEcCcHHHHHHHHHHHhhC----cCeEEEEEEeCChhhhHHHHHHHcCCCcc---cCCHHHHHhccCCCCCcEEEE
Confidence 58999999999999999995520 1555543 4444333 3567778887521 23556664 45899999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~G 213 (417)
++|+..+.++....... ++|+.|++...
T Consensus 78 atp~~~h~~~a~~al~a-~~Gk~Vi~ekp 105 (312)
T 1nvm_B 78 ATSASAHVQNEALLRQA-KPGIRLIDLTP 105 (312)
T ss_dssp CSCHHHHHHHHHHHHHH-CTTCEEEECST
T ss_pred CCChHHHHHHHHHHHHh-CCCCEEEEcCc
Confidence 99988887776654332 24777765443
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00064 Score=68.43 Aligned_cols=66 Identities=23% Similarity=0.237 Sum_probs=51.4
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcC-cCCEEEEc
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLLL 185 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~-~ADIViLa 185 (417)
.|+| |+|+|+|+|++|...|+.|+.. |.+|++.+....+ .+.+.+.|... .+.+++.. +||+++.|
T Consensus 172 ~L~G-ktV~I~G~GnVG~~~A~~l~~~------GakVvvsD~~~~~-~~~a~~~ga~~-----v~~~ell~~~~DIliP~ 238 (355)
T 1c1d_A 172 SLDG-LTVLVQGLGAVGGSLASLAAEA------GAQLLVADTDTER-VAHAVALGHTA-----VALEDVLSTPCDVFAPC 238 (355)
T ss_dssp CSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHHH-HHHHHHTTCEE-----CCGGGGGGCCCSEEEEC
T ss_pred CCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEEeCCccH-HHHHHhcCCEE-----eChHHhhcCccceecHh
Confidence 6899 9999999999999999999988 9998866554322 45566677653 36677776 89999854
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0011 Score=65.89 Aligned_cols=70 Identities=21% Similarity=0.224 Sum_probs=45.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhHHHHH--HcCceec--C-CCcCCHHhhcCcCCEEEE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEAR--AAGFTEE--N-GTLGDIYETISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~~~A~--~~G~~~~--~-~~~~s~~Ea~~~ADIViL 184 (417)
+||+|||.|.+|.++|..|... |+ +|.+.+....+....+. ..+.... + ....+..+++++||+||+
T Consensus 6 ~kI~ViGaG~vG~~~a~~l~~~------~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi 79 (326)
T 3pqe_A 6 NKVALIGAGFVGSSYAFALINQ------GITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCI 79 (326)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEE
Confidence 7999999999999999999998 76 77766664333222221 1221100 0 001233578999999999
Q ss_pred ccC
Q 014834 185 LIS 187 (417)
Q Consensus 185 avp 187 (417)
+..
T Consensus 80 ~ag 82 (326)
T 3pqe_A 80 CAG 82 (326)
T ss_dssp CCS
T ss_pred ecc
Confidence 864
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0012 Score=65.79 Aligned_cols=69 Identities=25% Similarity=0.239 Sum_probs=44.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhHHHHHH--cC--ceecCC--CcCCHHhhcCcCCEEE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AG--FTEENG--TLGDIYETISGSDLVL 183 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~~~A~~--~G--~~~~~~--~~~s~~Ea~~~ADIVi 183 (417)
+||+|||.|.||.++|..|... |+ +|.+.+....+....+.+ .+ +..... ...+.++ +++||+||
T Consensus 22 ~kV~ViGaG~vG~~~a~~la~~------g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~daDiVI 94 (330)
T 3ldh_A 22 NKITVVGCDAVGMADAISVLMK------DLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SAGSKLVV 94 (330)
T ss_dssp CEEEEESTTHHHHHHHHHHHHH------CCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CSSCSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hCCCCEEE
Confidence 8999999999999999999998 87 777666543322222211 11 110000 0235555 89999999
Q ss_pred EccC
Q 014834 184 LLIS 187 (417)
Q Consensus 184 Lavp 187 (417)
++..
T Consensus 95 itaG 98 (330)
T 3ldh_A 95 ITAG 98 (330)
T ss_dssp ECCS
T ss_pred EeCC
Confidence 9843
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0014 Score=64.76 Aligned_cols=67 Identities=21% Similarity=0.190 Sum_probs=46.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhHHHHHH-------c--CceecCCCcCCHHhhcCcCC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA-------A--GFTEENGTLGDIYETISGSD 180 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~~~A~~-------~--G~~~~~~~~~s~~Ea~~~AD 180 (417)
|||+|||.|.||.++|..|... |+ ++.+.+....+....+.+ . .... ...+..+++++||
T Consensus 1 Mkv~ViGaG~vG~~~a~~l~~~------~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v---~~~~~~~a~~~aD 71 (314)
T 3nep_X 1 MKVTVIGAGNVGATVAECVARQ------DVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRV---TGTNDYGPTEDSD 71 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEE---EEESSSGGGTTCS
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEE---EECCCHHHhCCCC
Confidence 5899999999999999999988 76 777776655433222211 1 1121 0124568899999
Q ss_pred EEEEccC
Q 014834 181 LVLLLIS 187 (417)
Q Consensus 181 IViLavp 187 (417)
+||++.+
T Consensus 72 vVii~ag 78 (314)
T 3nep_X 72 VCIITAG 78 (314)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 9999975
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00059 Score=66.49 Aligned_cols=74 Identities=16% Similarity=0.208 Sum_probs=59.5
Q ss_pred ccCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 108 FNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 108 l~gmkkIgIIG~G~-mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
++| +++.|||.|. +|.++|+.|... |..|++..++ ..++++.+++||+||.++
T Consensus 148 l~G-k~vvVvG~s~iVG~plA~lL~~~------gAtVtv~~~~-------------------t~~L~~~~~~ADIVI~Av 201 (276)
T 3ngx_A 148 YHE-NTVTIVNRSPVVGRPLSMMLLNR------NYTVSVCHSK-------------------TKDIGSMTRSSKIVVVAV 201 (276)
T ss_dssp CCS-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTT-------------------CSCHHHHHHHSSEEEECS
T ss_pred cCC-CEEEEEcCChHHHHHHHHHHHHC------CCeEEEEeCC-------------------cccHHHhhccCCEEEECC
Confidence 899 9999999986 899999999998 9998887542 246889999999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 187 SDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
+-.. +++ ..++|+|++|++.+
T Consensus 202 g~p~---~I~--~~~vk~GavVIDvg 222 (276)
T 3ngx_A 202 GRPG---FLN--REMVTPGSVVIDVG 222 (276)
T ss_dssp SCTT---CBC--GGGCCTTCEEEECC
T ss_pred CCCc---ccc--HhhccCCcEEEEec
Confidence 8522 222 24579999988765
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0013 Score=64.43 Aligned_cols=89 Identities=25% Similarity=0.222 Sum_probs=55.8
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHc---------CceecCCCcCCHHhhcCcCCEE
Q 014834 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA---------GFTEENGTLGDIYETISGSDLV 182 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~---------G~~~~~~~~~s~~Ea~~~ADIV 182 (417)
||+|||.|+||.+++..|... ++ +|.+.+...++....+.+. ..... .+.+. +++++||+|
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~------~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~--~t~d~-~a~~~aD~V 71 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMR------GYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRIS--GSNSY-EDMRGSDIV 71 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHH------TCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEE--EESCG-GGGTTCSEE
T ss_pred CEEEECcCHHHHHHHHHHHhC------CCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEE--ECCCH-HHhCCCCEE
Confidence 799999999999999999887 76 5777766543332212211 21110 01455 789999999
Q ss_pred EEccCCch----------------HHHHHHHHHhcCCCCcEEEEe
Q 014834 183 LLLISDAA----------------QADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 183 iLavpd~~----------------~~~Vl~eI~~~lk~gaiLi~a 211 (417)
|++.+... ..++.++|.++ .|+..+++.
T Consensus 72 i~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~ 115 (308)
T 2d4a_B 72 LVTAGIGRKPGMTREQLLEANANTMADLAEKIKAY-AKDAIVVIT 115 (308)
T ss_dssp EECCSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHH-CTTCEEEEC
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEe
Confidence 99965432 23444455555 366655544
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0019 Score=63.38 Aligned_cols=70 Identities=17% Similarity=0.189 Sum_probs=44.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhHHHHHH--cCceec--C-CCcCCHHhhcCcCCEEEE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AGFTEE--N-GTLGDIYETISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~~~A~~--~G~~~~--~-~~~~s~~Ea~~~ADIViL 184 (417)
+||+|||.|++|.+++..|... |+ +|.+.+....+....+.+ .+.... + ....+..+++++||+||+
T Consensus 7 ~KI~IIGaG~vG~~la~~l~~~------~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~aDvVvi 80 (317)
T 3d0o_A 7 NKVVLIGNGAVGSSYAFSLVNQ------SIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVI 80 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------CSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCCCCEEEE
Confidence 6999999999999999999887 75 666555443222222221 111000 0 001245778999999999
Q ss_pred ccC
Q 014834 185 LIS 187 (417)
Q Consensus 185 avp 187 (417)
+.+
T Consensus 81 ~ag 83 (317)
T 3d0o_A 81 CAG 83 (317)
T ss_dssp CCC
T ss_pred CCC
Confidence 975
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00067 Score=65.53 Aligned_cols=70 Identities=16% Similarity=0.176 Sum_probs=55.0
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccC
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavp 187 (417)
.+ ++|.|||.|-||.+++..|.+. |. +|.|.+|+.++..+.+.+.+... ..+.. +.++|+||.+||
T Consensus 118 ~~-~~vlvlGaGgaarav~~~L~~~------G~~~i~v~nRt~~ka~~la~~~~~~~----~~~~~--~~~~DivInaTp 184 (271)
T 1npy_A 118 KN-AKVIVHGSGGMAKAVVAAFKNS------GFEKLKIYARNVKTGQYLAALYGYAY----INSLE--NQQADILVNVTS 184 (271)
T ss_dssp TT-SCEEEECSSTTHHHHHHHHHHT------TCCCEEEECSCHHHHHHHHHHHTCEE----ESCCT--TCCCSEEEECSS
T ss_pred CC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHcCCcc----chhhh--cccCCEEEECCC
Confidence 46 8999999999999999999998 87 79999998777677777766532 11222 468999999999
Q ss_pred CchH
Q 014834 188 DAAQ 191 (417)
Q Consensus 188 d~~~ 191 (417)
....
T Consensus 185 ~gm~ 188 (271)
T 1npy_A 185 IGMK 188 (271)
T ss_dssp TTCT
T ss_pred CCcc
Confidence 7653
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00077 Score=69.83 Aligned_cols=72 Identities=18% Similarity=0.176 Sum_probs=48.4
Q ss_pred CEEEEEcccch--HHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHc---------CceecCCCcCCHHhhcCcCC
Q 014834 112 NQIGVIGWGSQ--GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---------GFTEENGTLGDIYETISGSD 180 (417)
Q Consensus 112 kkIgIIG~G~m--G~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~---------G~~~~~~~~~s~~Ea~~~AD 180 (417)
+||+|||.|+| |.+++..|...- .-.| +|++++...++ .+..... .+.. +.|.+|++++||
T Consensus 6 ~KIaVIGaGs~g~g~~la~~l~~~~--~~~g-eV~L~Di~~e~-le~~~~~~~~l~~~~~~I~~----TtD~~eAl~dAD 77 (450)
T 3fef_A 6 IKIAYIGGGSQGWARSLMSDLSIDE--RMSG-TVALYDLDFEA-AQKNEVIGNHSGNGRWRYEA----VSTLKKALSAAD 77 (450)
T ss_dssp EEEEEETTTCSSHHHHHHHHHHHCS--SCCE-EEEEECSSHHH-HHHHHHHHTTSTTSCEEEEE----ESSHHHHHTTCS
T ss_pred CEEEEECCChhHhHHHHHHHHHhcc--ccCC-eEEEEeCCHHH-HHHHHHHHHHHhccCCeEEE----ECCHHHHhcCCC
Confidence 69999999998 578888887630 0015 78777665332 2222111 1222 468899999999
Q ss_pred EEEEccCCchH
Q 014834 181 LVLLLISDAAQ 191 (417)
Q Consensus 181 IViLavpd~~~ 191 (417)
+||+++++...
T Consensus 78 fVI~airvG~~ 88 (450)
T 3fef_A 78 IVIISILPGSL 88 (450)
T ss_dssp EEEECCCSSCH
T ss_pred EEEeccccCCc
Confidence 99999987543
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00056 Score=66.97 Aligned_cols=76 Identities=14% Similarity=0.131 Sum_probs=60.1
Q ss_pred hhccCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~-mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| +++.|||.|. +|.++|+.|... |..|.+..+. ..++++.+++||+||.
T Consensus 157 i~l~G-k~vvVIG~s~iVG~p~A~lL~~~------gAtVtv~hs~-------------------t~~L~~~~~~ADIVI~ 210 (285)
T 3l07_A 157 IKTEG-AYAVVVGASNVVGKPVSQLLLNA------KATVTTCHRF-------------------TTDLKSHTTKADILIV 210 (285)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTT-------------------CSSHHHHHTTCSEEEE
T ss_pred CCCCC-CEEEEECCCchhHHHHHHHHHHC------CCeEEEEeCC-------------------chhHHHhcccCCEEEE
Confidence 45889 9999999987 699999999998 9888877542 1367889999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
+++-.. ++. ..++|||++|++.+
T Consensus 211 Avg~p~---~I~--~~~vk~GavVIDvg 233 (285)
T 3l07_A 211 AVGKPN---FIT--ADMVKEGAVVIDVG 233 (285)
T ss_dssp CCCCTT---CBC--GGGSCTTCEEEECC
T ss_pred CCCCCC---CCC--HHHcCCCcEEEEec
Confidence 998422 121 24579999988775
|
| >1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0027 Score=63.16 Aligned_cols=95 Identities=16% Similarity=0.129 Sum_probs=60.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEE-ecCChhhHHHHHHcCceecCC-------------CcCCHHhhc
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVG-LRKGSRSFAEARAAGFTEENG-------------TLGDIYETI 176 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg-~r~~s~s~~~A~~~G~~~~~~-------------~~~s~~Ea~ 176 (417)
|.||||||+|.||..+++.|.+. .+++++.. ++........+.+.|+....+ ...+.+++.
T Consensus 1 ~ikVgIiGaG~iG~~~~r~L~~~-----p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~ 75 (340)
T 1b7g_O 1 MVNVAVNGYGTIGKRVADAIIKQ-----PDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLI 75 (340)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTC-----TTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHH
T ss_pred CeEEEEEecCHHHHHHHHHHHcC-----CCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhh
Confidence 35899999999999999998865 14565433 333334445666656543100 011344555
Q ss_pred CcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 014834 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 177 ~~ADIViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~G 213 (417)
+++|+|+.|+|.....+..+... +.|..+++.++
T Consensus 76 ~~vDvV~~aTp~~~s~~~a~~~~---~aG~kvV~~sa 109 (340)
T 1b7g_O 76 KTSDIVVDTTPNGVGAQYKPIYL---QLQRNAIFQGG 109 (340)
T ss_dssp HHCSEEEECCSTTHHHHHHHHHH---HTTCEEEECTT
T ss_pred cCCCEEEECCCCchhHHHHHHHH---HcCCeEEEeCC
Confidence 68999999999988877765443 34655555444
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0018 Score=63.78 Aligned_cols=68 Identities=16% Similarity=0.184 Sum_probs=46.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhHHHHHH--cC------ceecCCCcCCHHhhcCcCCE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AG------FTEENGTLGDIYETISGSDL 181 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~~~A~~--~G------~~~~~~~~~s~~Ea~~~ADI 181 (417)
+||+|||.|++|.+++..|... ++ ++.+.+....+....+.+ .. +.. ..+..+++++||+
T Consensus 6 ~KI~IiGaG~vG~~~a~~l~~~------~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v----~~~~~~a~~~aDv 75 (318)
T 1ez4_A 6 QKVVLVGDGAVGSSYAFAMAQQ------GIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKI----YSGEYSDCKDADL 75 (318)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEE----EECCGGGGTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHcC------CCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEE----EECCHHHhCCCCE
Confidence 6999999999999999999887 65 676666543333222322 11 111 1245678999999
Q ss_pred EEEccCCc
Q 014834 182 VLLLISDA 189 (417)
Q Consensus 182 ViLavpd~ 189 (417)
||++.+..
T Consensus 76 Vii~ag~~ 83 (318)
T 1ez4_A 76 VVITAGAP 83 (318)
T ss_dssp EEECCCC-
T ss_pred EEECCCCC
Confidence 99998643
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00047 Score=68.78 Aligned_cols=98 Identities=11% Similarity=0.042 Sum_probs=66.4
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCce---ecCCCcCCHHhhcCcCCEEE
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT---EENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~---~~~~~~~s~~Ea~~~ADIVi 183 (417)
.+++ ++|.|||.|.+|.+.++.++.. |.+|++.+++.++ .+.+.+.|.. ..+....+..+.++++|+||
T Consensus 164 ~l~~-~~VlViGaGgvG~~aa~~a~~~------Ga~V~v~dr~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVI 235 (361)
T 1pjc_A 164 GVKP-GKVVILGGGVVGTEAAKMAVGL------GAQVQIFDINVER-LSYLETLFGSRVELLYSNSAEIETAVAEADLLI 235 (361)
T ss_dssp TBCC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCHHH-HHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEE
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEeCCHHH-HHHHHHhhCceeEeeeCCHHHHHHHHcCCCEEE
Confidence 4777 9999999999999999999998 9888888876443 3444443321 00000123456778999999
Q ss_pred EccCCchH--HH-HHHHHHhcCCCCcEEEEec
Q 014834 184 LLISDAAQ--AD-NYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 184 Lavpd~~~--~~-Vl~eI~~~lk~gaiLi~a~ 212 (417)
.+++.... .. +.++..+.|+++.+|++.+
T Consensus 236 ~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~ 267 (361)
T 1pjc_A 236 GAVLVPGRRAPILVPASLVEQMRTGSVIVDVA 267 (361)
T ss_dssp ECCCCTTSSCCCCBCHHHHTTSCTTCEEEETT
T ss_pred ECCCcCCCCCCeecCHHHHhhCCCCCEEEEEe
Confidence 99974331 11 1334557789999888664
|
| >3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00046 Score=64.78 Aligned_cols=109 Identities=17% Similarity=0.267 Sum_probs=69.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChh-hHHHHHHcCceecCCCcCCHHhhcC--cCCEEEEccCC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~-s~~~A~~~G~~~~~~~~~s~~Ea~~--~ADIViLavpd 188 (417)
++|+|||+|++|.++++.+... ..|++++...+.++. ....+.-.|+.+. + ..++++.++ +.|++++|+|.
T Consensus 85 ~~V~IvGaG~lG~aLa~~~~~~----~~g~~iVg~~D~dp~~kiG~~~i~GvpV~-~-~~dL~~~v~~~~Id~vIIAvPs 158 (212)
T 3keo_A 85 TNVMLVGCGNIGRALLHYRFHD----RNKMQISMAFDLDSNDLVGKTTEDGIPVY-G-ISTINDHLIDSDIETAILTVPS 158 (212)
T ss_dssp EEEEEECCSHHHHHHTTCCCCT----TSSEEEEEEEECTTSTTTTCBCTTCCBEE-E-GGGHHHHC-CCSCCEEEECSCG
T ss_pred CEEEEECcCHHHHHHHHhhhcc----cCCeEEEEEEeCCchhccCceeECCeEEe-C-HHHHHHHHHHcCCCEEEEecCc
Confidence 6899999999999999874311 127777655555443 3222012466542 1 356778876 48999999999
Q ss_pred chHHHHHHHHHhc-CCCCcEEEEecCchhhhhhhcccCCCCCccEEEecc
Q 014834 189 AAQADNYEKIFSC-MKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCP 237 (417)
Q Consensus 189 ~~~~~Vl~eI~~~-lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~P 237 (417)
....++.+.+.+. + ..++-|++- .+.+|+++.|--+..
T Consensus 159 ~~aq~v~d~lv~~GI--k~I~nFap~---------~l~vp~~v~v~~vdl 197 (212)
T 3keo_A 159 TEAQEVADILVKAGI--KGILSFSPV---------HLTLPKDIIVQYVDL 197 (212)
T ss_dssp GGHHHHHHHHHHHTC--CEEEECSSS---------CCCCCTTSEEEECCH
T ss_pred hhHHHHHHHHHHcCC--CEEEEcCCc---------ccCCCCCcEEEEeCc
Confidence 8887888775543 3 225655552 246678777765554
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00069 Score=66.75 Aligned_cols=76 Identities=13% Similarity=0.118 Sum_probs=59.3
Q ss_pred hhccCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHH--hhcCcCCEE
Q 014834 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY--ETISGSDLV 182 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~-mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~--Ea~~~ADIV 182 (417)
..++| +++.|||.|. +|.++|..|... |..|.+..+.. .+++ +.+++||+|
T Consensus 161 i~l~G-k~vvVIG~s~iVG~p~A~lL~~~------gAtVtv~~~~T-------------------~~l~l~~~~~~ADIV 214 (300)
T 4a26_A 161 IEMAG-KRAVVLGRSNIVGAPVAALLMKE------NATVTIVHSGT-------------------STEDMIDYLRTADIV 214 (300)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTTS-------------------CHHHHHHHHHTCSEE
T ss_pred CCCCC-CEEEEECCCchHHHHHHHHHHHC------CCeEEEEeCCC-------------------CCchhhhhhccCCEE
Confidence 45899 9999999987 799999999998 99998876531 1344 788999999
Q ss_pred EEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 183 LLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 183 iLavpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
|.+++-.. +++ ..++|+|++|++.+
T Consensus 215 I~Avg~p~---~I~--~~~vk~GavVIDvg 239 (300)
T 4a26_A 215 IAAMGQPG---YVK--GEWIKEGAAVVDVG 239 (300)
T ss_dssp EECSCCTT---CBC--GGGSCTTCEEEECC
T ss_pred EECCCCCC---CCc--HHhcCCCcEEEEEe
Confidence 99999532 222 24579999998765
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0021 Score=63.51 Aligned_cols=68 Identities=15% Similarity=0.148 Sum_probs=46.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhHHHHHH--cC------ceecCCCcCCHHhhcCcCCE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AG------FTEENGTLGDIYETISGSDL 181 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~~~A~~--~G------~~~~~~~~~s~~Ea~~~ADI 181 (417)
+||+|||.|++|.+++..|... ++ ++.+.+....+....+.+ .. +.. ..+..+++++||+
T Consensus 10 ~KI~IiGaG~vG~~la~~l~~~------~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i----~~~~~~a~~~aDv 79 (326)
T 2zqz_A 10 QKVILVGDGAVGSSYAYAMVLQ------GIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKI----YSAEYSDAKDADL 79 (326)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEE----EECCGGGGGGCSE
T ss_pred CEEEEECCCHHHHHHHHHHHcC------CCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEE----EECCHHHhCCCCE
Confidence 6999999999999999999887 65 676666543333222322 22 111 1245678999999
Q ss_pred EEEccCCc
Q 014834 182 VLLLISDA 189 (417)
Q Consensus 182 ViLavpd~ 189 (417)
||++.+..
T Consensus 80 Vii~ag~~ 87 (326)
T 2zqz_A 80 VVITAGAP 87 (326)
T ss_dssp EEECCCCC
T ss_pred EEEcCCCC
Confidence 99997643
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00066 Score=65.82 Aligned_cols=161 Identities=14% Similarity=0.112 Sum_probs=94.8
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCC-hhhH--HHHH----HcCceecCCCcCCHHhhcCcCCEE
Q 014834 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSF--AEAR----AAGFTEENGTLGDIYETISGSDLV 182 (417)
Q Consensus 111 mkkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~-s~s~--~~A~----~~G~~~~~~~~~s~~Ea~~~ADIV 182 (417)
|.||+|+| +|.||..+++.+.+. .+++++...+.. +... +... ..|+.. ..++++++.++|+|
T Consensus 7 mikV~V~Ga~G~MG~~i~~~l~~~-----~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v----~~dl~~ll~~~DVV 77 (272)
T 4f3y_A 7 SMKIAIAGASGRMGRMLIEAVLAA-----PDATLVGALDRTGSPQLGQDAGAFLGKQTGVAL----TDDIERVCAEADYL 77 (272)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHHC-----TTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBC----BCCHHHHHHHCSEE
T ss_pred ccEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEEecCcccccccHHHHhCCCCCcee----cCCHHHHhcCCCEE
Confidence 37999999 899999999998765 166665444432 2100 0000 114433 46889999999999
Q ss_pred EEccCCchHHHHHHHHHhcCCCCc-EEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHH--HHHhhcccccC--C
Q 014834 183 LLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVR--RLYVQGKEING--A 257 (417)
Q Consensus 183 iLavpd~~~~~Vl~eI~~~lk~ga-iLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr--~ly~~G~~~~G--~ 257 (417)
|-+++|....+++..... .|. +|+=+.|++-..++. .....+.+. +...||.+--+.- .+-+.-....+ .
T Consensus 78 IDfT~p~a~~~~~~~al~---~G~~vVigTTG~s~~~~~~-L~~aa~~~~-vv~a~N~s~Gv~l~~~~~~~aa~~l~~~~ 152 (272)
T 4f3y_A 78 IDFTLPEGTLVHLDAALR---HDVKLVIGTTGFSEPQKAQ-LRAAGEKIA-LVFSANMSVGVNVTMKLLEFAAKQFAQGY 152 (272)
T ss_dssp EECSCHHHHHHHHHHHHH---HTCEEEECCCCCCHHHHHH-HHHHTTTSE-EEECSCCCHHHHHHHHHHHHHHHHTSSSC
T ss_pred EEcCCHHHHHHHHHHHHH---cCCCEEEECCCCCHHHHHH-HHHHhccCC-EEEECCCCHHHHHHHHHHHHHHHhcCcCC
Confidence 999999888777765443 344 444467886443221 112234455 4788988765411 11000001111 2
Q ss_pred CceEEEeecC----C-CCHHHHHHHHHHHHHhCC
Q 014834 258 GINSSFAVHQ----D-VDGRATNVALGWSVALGS 286 (417)
Q Consensus 258 Gv~~liav~~----d-vsgea~e~a~~L~~alG~ 286 (417)
-+-. +-.|. | +||.|+.++..+....|.
T Consensus 153 diei-~E~HH~~K~DaPSGTA~~la~~i~~~~~~ 185 (272)
T 4f3y_A 153 DIEI-IEAHHRHKVDAPSGTALMMGETIAAATGR 185 (272)
T ss_dssp EEEE-EEEECTTCCSSSCHHHHHHHHHHHHTTTC
T ss_pred CEEE-EEecCCCCCCCCCHHHHHHHHHHHHHhCc
Confidence 2333 33333 2 589999999999888775
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0012 Score=64.55 Aligned_cols=76 Identities=18% Similarity=0.132 Sum_probs=60.2
Q ss_pred hhccCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~-mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| +++.|||.|. .|.++|..|... |..|.+..+. ..++++.+++||+||.
T Consensus 156 i~l~G-k~vvVvGrs~iVG~p~A~lL~~~------gAtVtv~h~~-------------------t~~L~~~~~~ADIVI~ 209 (285)
T 3p2o_A 156 IDLEG-KDAVIIGASNIVGRPMATMLLNA------GATVSVCHIK-------------------TKDLSLYTRQADLIIV 209 (285)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTT-------------------CSCHHHHHTTCSEEEE
T ss_pred CCCCC-CEEEEECCCchHHHHHHHHHHHC------CCeEEEEeCC-------------------chhHHHHhhcCCEEEE
Confidence 46889 9999999987 699999999998 9888877542 2367889999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
+++-.. ++. ..++|||++|++.+
T Consensus 210 Avg~p~---~I~--~~~vk~GavVIDVg 232 (285)
T 3p2o_A 210 AAGCVN---LLR--SDMVKEGVIVVDVG 232 (285)
T ss_dssp CSSCTT---CBC--GGGSCTTEEEEECC
T ss_pred CCCCCC---cCC--HHHcCCCeEEEEec
Confidence 998422 121 25579999988775
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0022 Score=63.29 Aligned_cols=66 Identities=20% Similarity=0.155 Sum_probs=44.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCC--hhhHHHHHH---------cCceecCCCcCCHHhhcCcC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG--SRSFAEARA---------AGFTEENGTLGDIYETISGS 179 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~--s~s~~~A~~---------~G~~~~~~~~~s~~Ea~~~A 179 (417)
+||+|||.|.||.++|..|... |+ +|.+.++.. .+....+.+ ..... ...+..+++++|
T Consensus 9 ~kv~ViGaG~vG~~ia~~l~~~------g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i---~~t~d~~a~~~a 79 (315)
T 3tl2_A 9 KKVSVIGAGFTGATTAFLLAQK------ELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANI---IGTSDYADTADS 79 (315)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCE---EEESCGGGGTTC
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEE---EEcCCHHHhCCC
Confidence 7999999999999999999998 88 887776652 211111111 01111 012235788999
Q ss_pred CEEEEcc
Q 014834 180 DLVLLLI 186 (417)
Q Consensus 180 DIViLav 186 (417)
|+||++.
T Consensus 80 DvVIiaa 86 (315)
T 3tl2_A 80 DVVVITA 86 (315)
T ss_dssp SEEEECC
T ss_pred CEEEEeC
Confidence 9999996
|
| >4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0012 Score=64.84 Aligned_cols=80 Identities=10% Similarity=0.122 Sum_probs=56.8
Q ss_pred CEEEEEcccchHH-HHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCc---CCEEEEccC
Q 014834 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG---SDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~-AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~---ADIViLavp 187 (417)
.||||||+|.||. .++..|+.. .+++|+...+.+.. +.|+.. ..+.+|++++ .|+|++++|
T Consensus 26 ~rvgiiG~G~ig~~~~~~~l~~~-----~~~~lvav~d~~~~------~~g~~~----~~~~~~ll~~~~~vD~V~i~tp 90 (330)
T 4ew6_A 26 INLAIVGVGKIVRDQHLPSIAKN-----ANFKLVATASRHGT------VEGVNS----YTTIEAMLDAEPSIDAVSLCMP 90 (330)
T ss_dssp EEEEEECCSHHHHHTHHHHHHHC-----TTEEEEEEECSSCC------CTTSEE----ESSHHHHHHHCTTCCEEEECSC
T ss_pred ceEEEEecCHHHHHHHHHHHHhC-----CCeEEEEEEeCChh------hcCCCc----cCCHHHHHhCCCCCCEEEEeCC
Confidence 4899999999998 789988875 15565433333222 257764 6789998765 899999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEE
Q 014834 188 DAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~gaiLi 209 (417)
+..+.++..... +.|+-|.
T Consensus 91 ~~~H~~~~~~al---~aGkhVl 109 (330)
T 4ew6_A 91 PQYRYEAAYKAL---VAGKHVF 109 (330)
T ss_dssp HHHHHHHHHHHH---HTTCEEE
T ss_pred cHHHHHHHHHHH---HcCCcEE
Confidence 999988776543 3455433
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0017 Score=66.80 Aligned_cols=78 Identities=21% Similarity=0.150 Sum_probs=52.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcC-ceecCCCcC---CHHhhcCcCCEEEEccC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLG---DIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G-~~~~~~~~~---s~~Ea~~~ADIViLavp 187 (417)
++|.|||.|.+|.+++..|.+. |.+|++.+|+.++..+.+.+.+ +......+. +..++++++|+||.++|
T Consensus 4 k~VlViGaG~iG~~ia~~L~~~------G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~ 77 (450)
T 1ff9_A 4 KSVLMLGSGFVTRPTLDVLTDS------GIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIP 77 (450)
T ss_dssp CEEEEECCSTTHHHHHHHHHTT------TCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC
T ss_pred CEEEEECCCHHHHHHHHHHHhC------cCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCc
Confidence 8999999999999999999988 8898888886444333332222 211000122 34467889999999999
Q ss_pred CchHHHHH
Q 014834 188 DAAQADNY 195 (417)
Q Consensus 188 d~~~~~Vl 195 (417)
...+..+.
T Consensus 78 ~~~~~~i~ 85 (450)
T 1ff9_A 78 YTFHATVI 85 (450)
T ss_dssp --CHHHHH
T ss_pred cccchHHH
Confidence 87665543
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0033 Score=62.44 Aligned_cols=96 Identities=16% Similarity=0.197 Sum_probs=59.8
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEE-ecCChhhHHHHHHcCceec------------CCC--cCCHHhh
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVG-LRKGSRSFAEARAAGFTEE------------NGT--LGDIYET 175 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg-~r~~s~s~~~A~~~G~~~~------------~~~--~~s~~Ea 175 (417)
|.||||||+|.+|.-+++.|.+. .+++++.. .+....+...+...|+... .+. ..+.+++
T Consensus 1 mikVgIiGaG~iG~~l~r~L~~~-----~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~ 75 (337)
T 1cf2_P 1 MKAVAINGYGTVGKRVADAIAQQ-----DDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDM 75 (337)
T ss_dssp CEEEEEECCSTTHHHHHHHHHTS-----SSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHH
T ss_pred CeEEEEEeECHHHHHHHHHHHcC-----CCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHH
Confidence 46899999999999999998863 15565433 3332333344444331110 000 1245666
Q ss_pred cCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 176 ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 176 ~~~ADIViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
..++|+||.|+|.....+..+... +.|+.|++.++-
T Consensus 76 ~~~vDvV~~atp~~~~~~~a~~~l---~aG~~VId~sp~ 111 (337)
T 1cf2_P 76 LDEADIVIDCTPEGIGAKNLKMYK---EKGIKAIFQGGE 111 (337)
T ss_dssp HHTCSEEEECCSTTHHHHHHHHHH---HHTCCEEECTTS
T ss_pred hcCCCEEEECCCchhhHHHHHHHH---HcCCEEEEecCC
Confidence 778999999999998877776543 335556666553
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.002 Score=63.14 Aligned_cols=67 Identities=21% Similarity=0.197 Sum_probs=45.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhHHHHHHc--C------ceecCCCcCCHHhhcCcCCE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--G------FTEENGTLGDIYETISGSDL 181 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~~~A~~~--G------~~~~~~~~~s~~Ea~~~ADI 181 (417)
+||+|||.|++|.+++..|... ++ ++.+.+...++....+.+. . +.. ..+..+++++||+
T Consensus 1 ~KI~IiGaG~vG~~~a~~l~~~------~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v----~~~~~~a~~~aD~ 70 (310)
T 2xxj_A 1 MKVGIVGSGMVGSATAYALALL------GVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWV----WAGSYGDLEGARA 70 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEE----EECCGGGGTTEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEE----EECCHHHhCCCCE
Confidence 5899999999999999999887 53 6766665533332223321 1 121 1133678999999
Q ss_pred EEEccCC
Q 014834 182 VLLLISD 188 (417)
Q Consensus 182 ViLavpd 188 (417)
||++.+.
T Consensus 71 Vii~ag~ 77 (310)
T 2xxj_A 71 VVLAAGV 77 (310)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9998753
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0018 Score=67.26 Aligned_cols=85 Identities=19% Similarity=0.227 Sum_probs=56.4
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcC---CHHhhcCcCCEE
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETISGSDLV 182 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~---s~~Ea~~~ADIV 182 (417)
..+++ ++|.|||+|.+|.+++..|.+. .|.+|.+.+|+.++..+.+...++......+. +..++++++|+|
T Consensus 19 ~~l~~-k~VlIiGAGgiG~aia~~L~~~-----~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvV 92 (467)
T 2axq_A 19 GRHMG-KNVLLLGSGFVAQPVIDTLAAN-----DDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVV 92 (467)
T ss_dssp ----C-EEEEEECCSTTHHHHHHHHHTS-----TTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEE
T ss_pred cCCCC-CEEEEECChHHHHHHHHHHHhC-----CCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEE
Confidence 45666 8999999999999999999875 14688888887555444444334321000122 345677899999
Q ss_pred EEccCCchHHHHHH
Q 014834 183 LLLISDAAQADNYE 196 (417)
Q Consensus 183 iLavpd~~~~~Vl~ 196 (417)
|.++|+..+..+..
T Consensus 93 In~tp~~~~~~v~~ 106 (467)
T 2axq_A 93 ISLIPYTFHPNVVK 106 (467)
T ss_dssp EECSCGGGHHHHHH
T ss_pred EECCchhhhHHHHH
Confidence 99999876655543
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0036 Score=62.15 Aligned_cols=66 Identities=15% Similarity=0.142 Sum_probs=45.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhHHHHHH--c------CceecCCCcCCHHhhcCcCCE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--A------GFTEENGTLGDIYETISGSDL 181 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~~~A~~--~------G~~~~~~~~~s~~Ea~~~ADI 181 (417)
+||+|||.|.+|.++|..|... |+ ++.+.+....+....+.+ . .+.. ..+..+++++||+
T Consensus 10 ~kV~ViGaG~vG~~~a~~l~~~------~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i----~~~~~~a~~~aDi 79 (326)
T 3vku_A 10 QKVILVGDGAVGSSYAYAMVLQ------GIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKI----YSAEYSDAKDADL 79 (326)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEE----EECCGGGGTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEE----EECcHHHhcCCCE
Confidence 8999999999999999999988 77 777666643332222221 1 1121 2234678999999
Q ss_pred EEEccC
Q 014834 182 VLLLIS 187 (417)
Q Consensus 182 ViLavp 187 (417)
||++..
T Consensus 80 Vvi~ag 85 (326)
T 3vku_A 80 VVITAG 85 (326)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 999864
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0012 Score=66.86 Aligned_cols=81 Identities=15% Similarity=0.125 Sum_probs=55.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCC---cEEEEEecCChhhHHHHHHcC------ceecCCCc---CCHHhhcCc
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD---IVVKVGLRKGSRSFAEARAAG------FTEENGTL---GDIYETISG 178 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G---~~ViVg~r~~s~s~~~A~~~G------~~~~~~~~---~s~~Ea~~~ 178 (417)
|+||+|||+|.+|.++++.|.+. | .+|.+.+|+.++..+.+.+.+ +......+ .++++++++
T Consensus 1 M~kVlIiGaGgiG~~ia~~L~~~------g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~ 74 (405)
T 4ina_A 1 MAKVLQIGAGGVGGVVAHKMAMN------REVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINE 74 (405)
T ss_dssp -CEEEEECCSHHHHHHHHHHHTC------TTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHh
Confidence 68999999999999999999987 6 378888887555544444321 21100001 234566776
Q ss_pred --CCEEEEccCCchHHHHHHH
Q 014834 179 --SDLVLLLISDAAQADNYEK 197 (417)
Q Consensus 179 --ADIViLavpd~~~~~Vl~e 197 (417)
+|+||.++|+.....+.+.
T Consensus 75 ~~~DvVin~ag~~~~~~v~~a 95 (405)
T 4ina_A 75 VKPQIVLNIALPYQDLTIMEA 95 (405)
T ss_dssp HCCSEEEECSCGGGHHHHHHH
T ss_pred hCCCEEEECCCcccChHHHHH
Confidence 8999999998876666654
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0017 Score=63.52 Aligned_cols=76 Identities=21% Similarity=0.171 Sum_probs=59.8
Q ss_pred hhccCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~-mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| +++.|||.|. .|.++|.-|... |..|.+..+. +.++++.+++||+||.
T Consensus 157 i~l~G-k~vvVvGrs~iVG~plA~lL~~~------gAtVtv~hs~-------------------T~~L~~~~~~ADIVI~ 210 (286)
T 4a5o_A 157 ADLYG-MDAVVVGASNIVGRPMALELLLG------GCTVTVTHRF-------------------TRDLADHVSRADLVVV 210 (286)
T ss_dssp CCCTT-CEEEEECTTSTTHHHHHHHHHHT------TCEEEEECTT-------------------CSCHHHHHHTCSEEEE
T ss_pred CCCCC-CEEEEECCCchhHHHHHHHHHHC------CCeEEEEeCC-------------------CcCHHHHhccCCEEEE
Confidence 45889 9999999987 799999999998 8888877532 1367888999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
+++-.. ++. ..++|||++|++.+
T Consensus 211 Avg~p~---~I~--~~~vk~GavVIDvg 233 (286)
T 4a5o_A 211 AAGKPG---LVK--GEWIKEGAIVIDVG 233 (286)
T ss_dssp CCCCTT---CBC--GGGSCTTCEEEECC
T ss_pred CCCCCC---CCC--HHHcCCCeEEEEec
Confidence 998422 221 24579999998765
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.002 Score=63.68 Aligned_cols=78 Identities=12% Similarity=0.074 Sum_probs=54.7
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecC---ChhhHHHHHHc----CceecCCCcCC---HHhh
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK---GSRSFAEARAA----GFTEENGTLGD---IYET 175 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~---~s~s~~~A~~~----G~~~~~~~~~s---~~Ea 175 (417)
.++| +++.|+|.|-+|.+++..|.+. |. +|.|.+|+ .++..+.+.+. +....-....+ ..+.
T Consensus 151 ~l~g-k~~lVlGaGG~g~aia~~L~~~------Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~ 223 (315)
T 3tnl_A 151 DIIG-KKMTICGAGGAATAICIQAALD------GVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKE 223 (315)
T ss_dssp CCTT-SEEEEECCSHHHHHHHHHHHHT------TCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHH
T ss_pred CccC-CEEEEECCChHHHHHHHHHHHC------CCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhh
Confidence 4678 9999999999999999999998 98 89999997 44444444332 22110000222 3456
Q ss_pred cCcCCEEEEccCCchH
Q 014834 176 ISGSDLVLLLISDAAQ 191 (417)
Q Consensus 176 ~~~ADIViLavpd~~~ 191 (417)
+.++|+||.+||....
T Consensus 224 l~~aDiIINaTp~Gm~ 239 (315)
T 3tnl_A 224 IAESVIFTNATGVGMK 239 (315)
T ss_dssp HHTCSEEEECSSTTST
T ss_pred hcCCCEEEECccCCCC
Confidence 7899999999996543
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0016 Score=64.22 Aligned_cols=77 Identities=18% Similarity=0.164 Sum_probs=54.7
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecC---ChhhHHHHHHc----CceecCCCcCCH---Hhh
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK---GSRSFAEARAA----GFTEENGTLGDI---YET 175 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~---~s~s~~~A~~~----G~~~~~~~~~s~---~Ea 175 (417)
.++| +++.|||.|-+|.+++..|.+. |. +|.|.+|+ .++..+.+.+. +....-....+. .+.
T Consensus 145 ~l~g-k~~lVlGAGGaaraia~~L~~~------G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~ 217 (312)
T 3t4e_A 145 DMRG-KTMVLLGAGGAATAIGAQAAIE------GIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEA 217 (312)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHH
T ss_pred CcCC-CEEEEECcCHHHHHHHHHHHHc------CCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhh
Confidence 4678 9999999999999999999998 98 89999998 44444444432 221100002233 556
Q ss_pred cCcCCEEEEccCCch
Q 014834 176 ISGSDLVLLLISDAA 190 (417)
Q Consensus 176 ~~~ADIViLavpd~~ 190 (417)
+.++|+||.+||...
T Consensus 218 l~~~DiIINaTp~Gm 232 (312)
T 3t4e_A 218 LASADILTNGTKVGM 232 (312)
T ss_dssp HHHCSEEEECSSTTS
T ss_pred ccCceEEEECCcCCC
Confidence 788999999999754
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0013 Score=64.37 Aligned_cols=161 Identities=15% Similarity=0.056 Sum_probs=94.4
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhh---HHHHH-----HcCceecCCCcCCHHhhcCcCCE
Q 014834 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS---FAEAR-----AAGFTEENGTLGDIYETISGSDL 181 (417)
Q Consensus 111 mkkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s---~~~A~-----~~G~~~~~~~~~s~~Ea~~~ADI 181 (417)
+.||+|+| +|.||..+++.+.+. .+++++...+..... .+... ..|+.. ..++++++.++|+
T Consensus 21 ~irV~V~Ga~GrMGr~i~~~v~~~-----~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v----~~dl~~ll~~aDV 91 (288)
T 3ijp_A 21 SMRLTVVGANGRMGRELITAIQRR-----KDVELCAVLVRKGSSFVDKDASILIGSDFLGVRI----TDDPESAFSNTEG 91 (288)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTC-----SSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBC----BSCHHHHTTSCSE
T ss_pred CeEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCCccccccchHHhhccCcCCcee----eCCHHHHhcCCCE
Confidence 36899999 999999999998764 166765444432111 00111 234443 5689999999999
Q ss_pred EEEccCCchHHHHHHHHHhcCCCCc-EEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHH--HHHhhcccccC--
Q 014834 182 VLLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVR--RLYVQGKEING-- 256 (417)
Q Consensus 182 ViLavpd~~~~~Vl~eI~~~lk~ga-iLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr--~ly~~G~~~~G-- 256 (417)
||-.++|....+.+..... .|. +|+=+.|++-...+. ....-+.+. +...||.+--+.- .+-+.--...+
T Consensus 92 vIDFT~p~a~~~~~~~~l~---~Gv~vViGTTG~~~e~~~~-L~~aa~~~~-~~~a~N~SiGv~ll~~l~~~aa~~l~~~ 166 (288)
T 3ijp_A 92 ILDFSQPQASVLYANYAAQ---KSLIHIIGTTGFSKTEEAQ-IADFAKYTT-IVKSGNMSLGVNLLANLVKRAAKALDDD 166 (288)
T ss_dssp EEECSCHHHHHHHHHHHHH---HTCEEEECCCCCCHHHHHH-HHHHHTTSE-EEECSCCCHHHHHHHHHHHHHHHHSCTT
T ss_pred EEEcCCHHHHHHHHHHHHH---cCCCEEEECCCCCHHHHHH-HHHHhCcCC-EEEECCCcHHHHHHHHHHHHHHHhcCCC
Confidence 9999998877666655433 344 444467885432211 111123444 4788998765421 11111000111
Q ss_pred CCceEEEeecC----C-CCHHHHHHHHHHHHHhCC
Q 014834 257 AGINSSFAVHQ----D-VDGRATNVALGWSVALGS 286 (417)
Q Consensus 257 ~Gv~~liav~~----d-vsgea~e~a~~L~~alG~ 286 (417)
.-+-. +-.|. | +||.|+.++..+....|.
T Consensus 167 ~dieI-iE~HH~~K~DaPSGTA~~la~~i~~~~~~ 200 (288)
T 3ijp_A 167 FDIEI-YEMHHANKVDSPSGTALLLGQAAAEGRNI 200 (288)
T ss_dssp SEEEE-EEEECTTCCCSSCHHHHHHHHHHHHHTTS
T ss_pred CCEEE-EEccCCCCCCCCCHHHHHHHHHHHHHhCC
Confidence 22322 33333 2 679999999999888875
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0027 Score=62.52 Aligned_cols=76 Identities=16% Similarity=0.179 Sum_probs=60.1
Q ss_pred hhccCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~-mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| +++.|||.|+ .|..+|+-|... |..|.+..+. ..++.+.+++||+||.
T Consensus 161 i~l~g-k~vvVIG~s~iVG~p~A~lL~~~------gAtVtv~hs~-------------------t~~L~~~~~~ADIVI~ 214 (301)
T 1a4i_A 161 VPIAG-RHAVVVGRSKIVGAPMHDLLLWN------NATVTTCHSK-------------------TAHLDEEVNKGDILVV 214 (301)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTT-------------------CSSHHHHHTTCSEEEE
T ss_pred CCCCC-CEEEEECCCchHHHHHHHHHHhC------CCeEEEEECC-------------------cccHHHHhccCCEEEE
Confidence 36789 9999999996 699999999998 8888877422 2478899999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
+++-... +. ..++|||++|++.+
T Consensus 215 Avg~p~~---I~--~~~vk~GavVIDVg 237 (301)
T 1a4i_A 215 ATGQPEM---VK--GEWIKPGAIVIDCG 237 (301)
T ss_dssp CCCCTTC---BC--GGGSCTTCEEEECC
T ss_pred CCCCccc---CC--HHHcCCCcEEEEcc
Confidence 9996332 21 23478999998765
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0045 Score=61.53 Aligned_cols=71 Identities=23% Similarity=0.236 Sum_probs=45.8
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhHHHHHH--cC--ceecCC--CcCCHHhhcCcC
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AG--FTEENG--TLGDIYETISGS 179 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~~~A~~--~G--~~~~~~--~~~s~~Ea~~~A 179 (417)
... +||+|||.|.||.++|..|... |+ ++.+.+....+....+.+ .. +..... ...+. +.+++|
T Consensus 17 ~~~-~kV~ViGaG~vG~~~a~~l~~~------~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~-~~~~~a 88 (331)
T 4aj2_A 17 VPQ-NKITVVGVGAVGMACAISILMK------DLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDY-SVTANS 88 (331)
T ss_dssp CCS-SEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSG-GGGTTE
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHhC------CCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCH-HHhCCC
Confidence 344 8999999999999999999888 76 777766653333222221 11 110000 02344 468999
Q ss_pred CEEEEcc
Q 014834 180 DLVLLLI 186 (417)
Q Consensus 180 DIViLav 186 (417)
|+||++.
T Consensus 89 DiVvi~a 95 (331)
T 4aj2_A 89 KLVIITA 95 (331)
T ss_dssp EEEEECC
T ss_pred CEEEEcc
Confidence 9999985
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0021 Score=62.93 Aligned_cols=76 Identities=16% Similarity=0.104 Sum_probs=59.7
Q ss_pred hhccCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~-mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| +++.|||.|+ .|..+|+-|... |..|.+..+. ..++.+.+++||+||.
T Consensus 155 i~l~g-k~vvVIG~s~iVG~p~A~lL~~~------gAtVtv~hs~-------------------t~~L~~~~~~ADIVI~ 208 (288)
T 1b0a_A 155 IDTFG-LNAVVIGASNIVGRPMSMELLLA------GCTTTVTHRF-------------------TKNLRHHVENADLLIV 208 (288)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHTT------TCEEEEECSS-------------------CSCHHHHHHHCSEEEE
T ss_pred CCCCC-CEEEEECCChHHHHHHHHHHHHC------CCeEEEEeCC-------------------chhHHHHhccCCEEEE
Confidence 46789 9999999997 599999999998 8888877432 2367889999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
+++-... +. ..++|||++|++.+
T Consensus 209 Avg~p~l---I~--~~~vk~GavVIDVg 231 (288)
T 1b0a_A 209 AVGKPGF---IP--GDWIKEGAIVIDVG 231 (288)
T ss_dssp CSCCTTC---BC--TTTSCTTCEEEECC
T ss_pred CCCCcCc---CC--HHHcCCCcEEEEcc
Confidence 9994431 21 23479999998765
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0013 Score=63.36 Aligned_cols=74 Identities=15% Similarity=0.160 Sum_probs=53.3
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCc--------eecCCCcCCHHhhcCc
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF--------TEENGTLGDIYETISG 178 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~--------~~~~~~~~s~~Ea~~~ 178 (417)
.++| +++.|+|.|.+|.+++..|.+. | +|++.+|+.++..+.+.+.+. .. .+.+..+.+.+
T Consensus 125 ~l~~-k~vlV~GaGgiG~aia~~L~~~------G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~---d~~~~~~~~~~ 193 (287)
T 1nvt_A 125 RVKD-KNIVIYGAGGAARAVAFELAKD------N-NIIIANRTVEKAEALAKEIAEKLNKKFGEEV---KFSGLDVDLDG 193 (287)
T ss_dssp CCCS-CEEEEECCSHHHHHHHHHHTSS------S-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHE---EEECTTCCCTT
T ss_pred CcCC-CEEEEECchHHHHHHHHHHHHC------C-CEEEEECCHHHHHHHHHHHhhhcccccceeE---EEeeHHHhhCC
Confidence 4678 9999999999999999999998 9 999888875544444433211 10 01233566788
Q ss_pred CCEEEEccCCchH
Q 014834 179 SDLVLLLISDAAQ 191 (417)
Q Consensus 179 ADIViLavpd~~~ 191 (417)
+|+||.++|....
T Consensus 194 ~DilVn~ag~~~~ 206 (287)
T 1nvt_A 194 VDIIINATPIGMY 206 (287)
T ss_dssp CCEEEECSCTTCT
T ss_pred CCEEEECCCCCCC
Confidence 9999999986543
|
| >2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0083 Score=59.88 Aligned_cols=92 Identities=21% Similarity=0.143 Sum_probs=58.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCh-hhHHHHH--------------------HcCceecCCCcC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEAR--------------------AAGFTEENGTLG 170 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s-~s~~~A~--------------------~~G~~~~~~~~~ 170 (417)
.||||+|+|.+|..+++.|... .+++++..++... .....++ ..++.. ..
T Consensus 3 ikVgI~G~G~IGr~v~r~l~~~-----~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v----~~ 73 (343)
T 2yyy_A 3 AKVLINGYGSIGKRVADAVSMQ-----DDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPV----EG 73 (343)
T ss_dssp EEEEEECCSHHHHHHHHHHHHS-----SSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCC----CC
T ss_pred eEEEEECCCHHHHHHHHHHHhC-----CCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEE----CC
Confidence 5999999999999999998764 1456543332211 1111222 222222 12
Q ss_pred CHHhhcCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 171 DIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 171 s~~Ea~~~ADIViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
+.++...++|+|+.|+|.....+..+ ..+++.|+.|+++++.
T Consensus 74 ~~~~~~~~vDiV~eatg~~~s~~~a~--~~~l~aG~~VI~sap~ 115 (343)
T 2yyy_A 74 TILDIIEDADIVVDGAPKKIGKQNLE--NIYKPHKVKAILQGGE 115 (343)
T ss_dssp BGGGTGGGCSEEEECCCTTHHHHHHH--HTTTTTTCEEEECTTS
T ss_pred chHHhccCCCEEEECCCccccHHHHH--HHHHHCCCEEEECCCc
Confidence 34555678999999999877665554 4678888877776654
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0047 Score=58.47 Aligned_cols=87 Identities=18% Similarity=0.203 Sum_probs=58.1
Q ss_pred hhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCC-------------------hhhHHHHHHc----
Q 014834 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEARAA---- 160 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~-------------------s~s~~~A~~~---- 160 (417)
+..|++ ++|.|||+|.+|..++++|... |+ ++.+.++.. .+....++..
T Consensus 26 q~~l~~-~~VlVvG~Gg~G~~va~~La~~------Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n 98 (249)
T 1jw9_B 26 QEALKD-SRVLIVGLGGLGCAASQYLASA------GVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRIN 98 (249)
T ss_dssp HHHHHH-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHC
T ss_pred HHHHhC-CeEEEEeeCHHHHHHHHHHHHc------CCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHC
Confidence 567888 9999999999999999999999 87 777766653 3333222221
Q ss_pred -Ccee--cCCCcC--CHHhhcCcCCEEEEccCCchHHHHHHHH
Q 014834 161 -GFTE--ENGTLG--DIYETISGSDLVLLLISDAAQADNYEKI 198 (417)
Q Consensus 161 -G~~~--~~~~~~--s~~Ea~~~ADIViLavpd~~~~~Vl~eI 198 (417)
++.. ...... +.++.++++|+||.++.+......+.+.
T Consensus 99 p~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~~~~~l~~~ 141 (249)
T 1jw9_B 99 PHIAITPVNALLDDAELAALIAEHDLVLDCTDNVAVRNQLNAG 141 (249)
T ss_dssp TTSEEEEECSCCCHHHHHHHHHTSSEEEECCSSHHHHHHHHHH
T ss_pred CCcEEEEEeccCCHhHHHHHHhCCCEEEEeCCCHHHHHHHHHH
Confidence 2221 011111 2356788999999999876655555543
|
| >3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0039 Score=61.83 Aligned_cols=98 Identities=18% Similarity=0.196 Sum_probs=56.7
Q ss_pred CCCEEEEEcccchHHHHHHHHHhh---hhhhcCCcEEE-EEecCChhh----HH--HHHHcC-ceecCCCcC--CHHhhc
Q 014834 110 GINQIGVIGWGSQGPAQAQNLRDS---LAEAKSDIVVK-VGLRKGSRS----FA--EARAAG-FTEENGTLG--DIYETI 176 (417)
Q Consensus 110 gmkkIgIIG~G~mG~AiA~~Lr~s---~~~~~~G~~Vi-Vg~r~~s~s----~~--~A~~~G-~~~~~~~~~--s~~Ea~ 176 (417)
||.||||||+|.||..+++.|.+. +...+.+++|+ |.+++.... .. .+...+ ... .. +.++++
T Consensus 1 ~mirvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~~~~----~~~~d~~~ll 76 (327)
T 3do5_A 1 GMIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETGML----RDDAKAIEVV 76 (327)
T ss_dssp -CEEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHHSSC----SBCCCHHHHH
T ss_pred CcEEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccCccc----cCCCCHHHHh
Confidence 367999999999999999998764 11122356554 333332211 11 111111 111 23 788887
Q ss_pred C--cCCEEEEccCCchH-HHHHHHHHhcCCCCcEEEEe
Q 014834 177 S--GSDLVLLLISDAAQ-ADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 177 ~--~ADIViLavpd~~~-~~Vl~eI~~~lk~gaiLi~a 211 (417)
+ +.|+|+.++|+..+ .+.++-+...|+.|+-|+..
T Consensus 77 ~~~~iDvVv~~tp~~~h~~~a~~~~~~aL~aGkhVv~~ 114 (327)
T 3do5_A 77 RSADYDVLIEASVTRVDGGEGVNYIREALKRGKHVVTS 114 (327)
T ss_dssp HHSCCSEEEECCCCC----CHHHHHHHHHTTTCEEEEC
T ss_pred cCCCCCEEEECCCCcccchhHHHHHHHHHHCCCeEEec
Confidence 5 58999999999875 22333345567778866644
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0044 Score=64.10 Aligned_cols=86 Identities=21% Similarity=0.225 Sum_probs=56.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEE-EEecCChhhHHHHHHc-C----------------------ceecCC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAA-G----------------------FTEENG 167 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vi-Vg~r~~s~s~~~A~~~-G----------------------~~~~~~ 167 (417)
.||||||+|.||..++..+.+. .++++. |.+++.++..+.+.+. | ...
T Consensus 24 IRVGIIGaG~iG~~~~~~l~~~-----~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v--- 95 (446)
T 3upl_A 24 IRIGLIGAGEMGTDIVTQVARM-----QGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAV--- 95 (446)
T ss_dssp EEEEEECCSHHHHHHHHHHTTS-----SSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEE---
T ss_pred eEEEEECChHHHHHHHHHHhhC-----CCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceE---
Confidence 5899999999999999988754 155554 4455444444444443 5 112
Q ss_pred CcCCHHhhcC--cCCEEEEccCCc-hHHHHHHHHHhcCCCCcEEE
Q 014834 168 TLGDIYETIS--GSDLVLLLISDA-AQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 168 ~~~s~~Ea~~--~ADIViLavpd~-~~~~Vl~eI~~~lk~gaiLi 209 (417)
+.|.+++++ +.|+|++++|+. .+.++... .|+.|+-|+
T Consensus 96 -~~D~eeLL~d~dIDaVviaTp~p~~H~e~a~~---AL~AGKHVv 136 (446)
T 3upl_A 96 -TDDNDLILSNPLIDVIIDATGIPEVGAETGIA---AIRNGKHLV 136 (446)
T ss_dssp -ESCHHHHHTCTTCCEEEECSCCHHHHHHHHHH---HHHTTCEEE
T ss_pred -ECCHHHHhcCCCCCEEEEcCCChHHHHHHHHH---HHHcCCcEE
Confidence 468889887 589999999874 34454433 345677554
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0084 Score=58.76 Aligned_cols=68 Identities=18% Similarity=0.174 Sum_probs=45.4
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCC--cEEEEEecCChhhHHHHHH--cCcee--cCCC--cCCHHhhcCcCCEE
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSD--IVVKVGLRKGSRSFAEARA--AGFTE--ENGT--LGDIYETISGSDLV 182 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G--~~ViVg~r~~s~s~~~A~~--~G~~~--~~~~--~~s~~Ea~~~ADIV 182 (417)
+||+|||. |.+|.+++..|... | .+|.+.++.. ....+.+ ..... ...+ ..+.++++++||+|
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~------~~~~ev~L~Di~~--~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvV 72 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNS------PLVSRLTLYDIAH--TPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVV 72 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTC------TTCSEEEEEESSS--HHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEE
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCcEEEEEeCCc--cHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEE
Confidence 48999998 99999999999887 6 4777666654 2222222 22110 0000 13577899999999
Q ss_pred EEccC
Q 014834 183 LLLIS 187 (417)
Q Consensus 183 iLavp 187 (417)
|++..
T Consensus 73 vi~ag 77 (314)
T 1mld_A 73 VIPAG 77 (314)
T ss_dssp EECCS
T ss_pred EECCC
Confidence 99863
|
| >2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.00079 Score=62.94 Aligned_cols=81 Identities=12% Similarity=0.144 Sum_probs=53.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcC-cCCEEEEccCCch
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~-~ADIViLavpd~~ 190 (417)
++|+|||+|++|.++++.+... . |++++...+.+...... ...|+.+. ...++++.++ +.|+|++|+|...
T Consensus 81 ~rV~IIGaG~~G~~la~~~~~~----~-g~~iVg~~D~dp~k~g~-~i~gv~V~--~~~dl~ell~~~ID~ViIA~Ps~~ 152 (211)
T 2dt5_A 81 WGLCIVGMGRLGSALADYPGFG----E-SFELRGFFDVDPEKVGR-PVRGGVIE--HVDLLPQRVPGRIEIALLTVPREA 152 (211)
T ss_dssp EEEEEECCSHHHHHHHHCSCCC----S-SEEEEEEEESCTTTTTC-EETTEEEE--EGGGHHHHSTTTCCEEEECSCHHH
T ss_pred CEEEEECccHHHHHHHHhHhhc----C-CcEEEEEEeCCHHHHhh-hhcCCeee--cHHhHHHHHHcCCCEEEEeCCchh
Confidence 6899999999999999864332 2 67665555443322211 11243321 1456788876 5899999999988
Q ss_pred HHHHHHHHHh
Q 014834 191 QADNYEKIFS 200 (417)
Q Consensus 191 ~~~Vl~eI~~ 200 (417)
+.++.+.+..
T Consensus 153 ~~ei~~~l~~ 162 (211)
T 2dt5_A 153 AQKAADLLVA 162 (211)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888776644
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0055 Score=63.26 Aligned_cols=75 Identities=17% Similarity=0.229 Sum_probs=53.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCC---HHhh-cCcCCEEEEccC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYET-ISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s---~~Ea-~~~ADIViLavp 187 (417)
|||-|+|+|.+|..+|+.|... |++|++-+...+...+...+.++....|...+ ++++ +++||+++.+|+
T Consensus 4 M~iiI~G~G~vG~~la~~L~~~------~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t~ 77 (461)
T 4g65_A 4 MKIIILGAGQVGGTLAENLVGE------NNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVTN 77 (461)
T ss_dssp EEEEEECCSHHHHHHHHHTCST------TEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECCS
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEcC
Confidence 7999999999999999999988 99988776654443344455665432222233 3333 789999998888
Q ss_pred CchHH
Q 014834 188 DAAQA 192 (417)
Q Consensus 188 d~~~~ 192 (417)
+....
T Consensus 78 ~De~N 82 (461)
T 4g65_A 78 TDETN 82 (461)
T ss_dssp CHHHH
T ss_pred ChHHH
Confidence 76543
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.028 Score=51.05 Aligned_cols=76 Identities=18% Similarity=0.203 Sum_probs=52.6
Q ss_pred hhhccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCc-eecCCCc-CCHHhhcCcCCE
Q 014834 105 PDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF-TEENGTL-GDIYETISGSDL 181 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~-~~~~~~~-~s~~Ea~~~ADI 181 (417)
...|+| |+|.|.|. |.+|.++++.|.+. |++|++..|+.++. +.....++ ......+ .++.+++.+.|+
T Consensus 16 ~~~l~~-~~ilVtGatG~iG~~l~~~L~~~------G~~V~~~~R~~~~~-~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~ 87 (236)
T 3e8x_A 16 NLYFQG-MRVLVVGANGKVARYLLSELKNK------GHEPVAMVRNEEQG-PELRERGASDIVVANLEEDFSHAFASIDA 87 (236)
T ss_dssp -----C-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSGGGH-HHHHHTTCSEEEECCTTSCCGGGGTTCSE
T ss_pred ccCcCC-CeEEEECCCChHHHHHHHHHHhC------CCeEEEEECChHHH-HHHHhCCCceEEEcccHHHHHHHHcCCCE
Confidence 467889 99999997 99999999999999 99998888875543 33334455 3211111 456778889999
Q ss_pred EEEccCC
Q 014834 182 VLLLISD 188 (417)
Q Consensus 182 ViLavpd 188 (417)
||.+...
T Consensus 88 vi~~ag~ 94 (236)
T 3e8x_A 88 VVFAAGS 94 (236)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9998764
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=96.37 E-value=0.014 Score=60.80 Aligned_cols=75 Identities=20% Similarity=0.118 Sum_probs=44.5
Q ss_pred CEEEEEcccchH--HHHHHHHHhhhhhhcCCcEEEEEecCChhhH---HHHH----HcCceecCCCcCCHHhhcCcCCEE
Q 014834 112 NQIGVIGWGSQG--PAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF---AEAR----AAGFTEENGTLGDIYETISGSDLV 182 (417)
Q Consensus 112 kkIgIIG~G~mG--~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~---~~A~----~~G~~~~~~~~~s~~Ea~~~ADIV 182 (417)
+||+|||.|+|| .+++..|.... +-.+.+|++.++..++.. .... ..+....=....|.++++++||+|
T Consensus 4 ~KIaVIGAGsVg~g~ala~~La~~~--~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~dAD~V 81 (480)
T 1obb_A 4 VKIGIIGAGSAVFSLRLVSDLCKTP--GLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFV 81 (480)
T ss_dssp CEEEEETTTCHHHHHHHHHHHHTCG--GGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred CEEEEECCCchHHHHHHHHHHHhcC--cCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHhCCCCEE
Confidence 699999999984 66677776420 001557887776543211 1111 111110000135778899999999
Q ss_pred EEccCC
Q 014834 183 LLLISD 188 (417)
Q Consensus 183 iLavpd 188 (417)
|+++|.
T Consensus 82 Iiaagv 87 (480)
T 1obb_A 82 INTAMV 87 (480)
T ss_dssp EECCCT
T ss_pred EECCCc
Confidence 999974
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0066 Score=59.28 Aligned_cols=78 Identities=17% Similarity=0.175 Sum_probs=57.7
Q ss_pred hhccCCCEEEEEcccch-HHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~m-G~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| +++.|||.|++ |..+|+.|... +.|..|++..+. ..++.+.+++||+||.
T Consensus 154 i~l~g-k~vvVvG~s~iVG~p~A~lL~~~----g~~atVtv~h~~-------------------t~~L~~~~~~ADIVI~ 209 (281)
T 2c2x_A 154 ISIAG-AHVVVIGRGVTVGRPLGLLLTRR----SENATVTLCHTG-------------------TRDLPALTRQADIVVA 209 (281)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHTST----TTCCEEEEECTT-------------------CSCHHHHHTTCSEEEE
T ss_pred CCCCC-CEEEEECCCcHHHHHHHHHHhcC----CCCCEEEEEECc-------------------hhHHHHHHhhCCEEEE
Confidence 36889 99999999986 99999999765 013477776432 2368889999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
+++-... +. ..++|+|++|++.+
T Consensus 210 Avg~p~~---I~--~~~vk~GavVIDVg 232 (281)
T 2c2x_A 210 AVGVAHL---LT--ADMVRPGAAVIDVG 232 (281)
T ss_dssp CSCCTTC---BC--GGGSCTTCEEEECC
T ss_pred CCCCCcc---cC--HHHcCCCcEEEEcc
Confidence 9984332 21 23478999888765
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.021 Score=53.12 Aligned_cols=70 Identities=13% Similarity=0.087 Sum_probs=50.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCc
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~ 189 (417)
||||.|+|.|.+|..+++.|.+. |++|++..|+..+ .......++....+.+.+++ ++++|+||.+..+.
T Consensus 5 ~~~ilVtGaG~iG~~l~~~L~~~------g~~V~~~~r~~~~-~~~~~~~~~~~~~~D~~d~~--~~~~d~vi~~a~~~ 74 (286)
T 3ius_A 5 TGTLLSFGHGYTARVLSRALAPQ------GWRIIGTSRNPDQ-MEAIRASGAEPLLWPGEEPS--LDGVTHLLISTAPD 74 (286)
T ss_dssp CCEEEEETCCHHHHHHHHHHGGG------TCEEEEEESCGGG-HHHHHHTTEEEEESSSSCCC--CTTCCEEEECCCCB
T ss_pred cCcEEEECCcHHHHHHHHHHHHC------CCEEEEEEcChhh-hhhHhhCCCeEEEecccccc--cCCCCEEEECCCcc
Confidence 38999999999999999999999 9999887776543 33334456543222233433 78899999988643
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.006 Score=52.22 Aligned_cols=86 Identities=21% Similarity=0.167 Sum_probs=63.7
Q ss_pred CCEEEEEcc----cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 111 INQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 111 mkkIgIIG~----G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
.++|+|||. +..|..+.++|++. |++|+-.+.+... -.|... ..++.|+=. -|++++++
T Consensus 4 p~siAVVGaS~~~~~~g~~v~~~L~~~------g~~V~pVnP~~~~------i~G~~~----y~sl~dlp~-vDlavi~~ 66 (122)
T 3ff4_A 4 MKKTLILGATPETNRYAYLAAERLKSH------GHEFIPVGRKKGE------VLGKTI----INERPVIEG-VDTVTLYI 66 (122)
T ss_dssp CCCEEEETCCSCTTSHHHHHHHHHHHH------TCCEEEESSSCSE------ETTEEC----BCSCCCCTT-CCEEEECS
T ss_pred CCEEEEEccCCCCCCHHHHHHHHHHHC------CCeEEEECCCCCc------CCCeec----cCChHHCCC-CCEEEEEe
Confidence 378999998 56899999999999 9987655543221 146654 556666656 89999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCch
Q 014834 187 SDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiLi~a~G~~ 215 (417)
|+....++++++... ... .|++..|+.
T Consensus 67 p~~~v~~~v~e~~~~-g~k-~v~~~~G~~ 93 (122)
T 3ff4_A 67 NPQNQLSEYNYILSL-KPK-RVIFNPGTE 93 (122)
T ss_dssp CHHHHGGGHHHHHHH-CCS-EEEECTTCC
T ss_pred CHHHHHHHHHHHHhc-CCC-EEEECCCCC
Confidence 999999999986653 223 367889983
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.011 Score=60.22 Aligned_cols=90 Identities=18% Similarity=0.172 Sum_probs=63.9
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecC----Chhh--------HHHHHHcCceecCCCcCCHH
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK----GSRS--------FAEARAAGFTEENGTLGDIY 173 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~----~s~s--------~~~A~~~G~~~~~~~~~s~~ 173 (417)
.++. .||.|+|.|.+|.++|+.|... |. +|++.+++ ..+. ...|++.... ....+++
T Consensus 189 ~l~~-~kVVv~GAGaAG~~iAkll~~~------G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~---~~~~~L~ 258 (388)
T 1vl6_A 189 KIEE-VKVVVNGIGAAGYNIVKFLLDL------GVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPE---RLSGDLE 258 (388)
T ss_dssp CTTT-CEEEEECCSHHHHHHHHHHHHH------TCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTT---CCCSCHH
T ss_pred CCCC-cEEEEECCCHHHHHHHHHHHhC------CCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhcc---CchhhHH
Confidence 4566 8999999999999999999998 88 88888886 3331 3455443211 1246799
Q ss_pred hhcCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEE
Q 014834 174 ETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 174 Ea~~~ADIViLavpd~~~~~Vl~eI~~~lk~gaiLi 209 (417)
|+++++|++|=+..|.... +++...|+++.+|.
T Consensus 259 eav~~ADVlIG~Sap~l~t---~emVk~Ma~~pIIf 291 (388)
T 1vl6_A 259 TALEGADFFIGVSRGNILK---PEWIKKMSRKPVIF 291 (388)
T ss_dssp HHHTTCSEEEECSCSSCSC---HHHHTTSCSSCEEE
T ss_pred HHHccCCEEEEeCCCCccC---HHHHHhcCCCCEEE
Confidence 9999999999887653321 23444577777664
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0016 Score=62.84 Aligned_cols=160 Identities=14% Similarity=0.105 Sum_probs=89.2
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCh-hh--HHHHHH-----cCceecCCCcCCHHhhcCcCCEE
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RS--FAEARA-----AGFTEENGTLGDIYETISGSDLV 182 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s-~s--~~~A~~-----~G~~~~~~~~~s~~Ea~~~ADIV 182 (417)
+||+|+|+ |.||..+++.+... .|++++...+.+. +. .+.... .|+.. ..++++++.++|+|
T Consensus 6 mkV~V~Ga~G~mG~~~~~~~~~~-----~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~----~~dl~~~l~~~DvV 76 (273)
T 1dih_A 6 IRVAIAGAGGRMGRQLIQAALAL-----EGVQLGAALEREGSSLLGSDAGELAGAGKTGVTV----QSSLDAVKDDFDVF 76 (273)
T ss_dssp EEEEETTTTSHHHHHHHHHHHHS-----TTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCE----ESCSTTTTTSCSEE
T ss_pred cEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCchhhhhhhHHHHcCCCcCCcee----cCCHHHHhcCCCEE
Confidence 58999999 99999999988743 1666653333322 10 011111 12222 34677888899999
Q ss_pred EEccCCchHHHHHHHHHhcCCCCcEEEE-ecCchhhhhhhcccCCCCCccEEEeccCCCchhHH--HHHhhccccc--CC
Q 014834 183 LLLISDAAQADNYEKIFSCMKPNSILGL-SHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVR--RLYVQGKEIN--GA 257 (417)
Q Consensus 183 iLavpd~~~~~Vl~eI~~~lk~gaiLi~-a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr--~ly~~G~~~~--G~ 257 (417)
|-.++|....+++..... .|.-+++ ..|++....+. .....+.+. +...||.+-...- ++.+.--... ++
T Consensus 77 IDft~p~~~~~~~~~a~~---~G~~vVigTtG~~~e~~~~-L~~~a~~~~-vv~a~N~siGvn~~~~l~~~aa~~~~~~~ 151 (273)
T 1dih_A 77 IDFTRPEGTLNHLAFCRQ---HGKGMVIGTTGFDEAGKQA-IRDAAADIA-IVFAANFSVGVNVMLKLLEKAAKVMGDYT 151 (273)
T ss_dssp EECSCHHHHHHHHHHHHH---TTCEEEECCCCCCHHHHHH-HHHHTTTSC-EEECSCCCHHHHHHHHHHHHHHHHHTTTS
T ss_pred EEcCChHHHHHHHHHHHh---CCCCEEEECCCCCHHHHHH-HHHhcCCCC-EEEEecCcHHHHHHHHHHHHHHHhcCCCC
Confidence 988887777666655433 4543443 56886543221 112234444 5668887654311 1111100011 12
Q ss_pred CceEEEeecC----C-CCHHHHHHHHHHHHHhCC
Q 014834 258 GINSSFAVHQ----D-VDGRATNVALGWSVALGS 286 (417)
Q Consensus 258 Gv~~liav~~----d-vsgea~e~a~~L~~alG~ 286 (417)
-+-. +-.|. | +||.++.++..+....|.
T Consensus 152 diei-iE~Hh~~K~DaPSGTA~~~ae~i~~~~~~ 184 (273)
T 1dih_A 152 DIEI-IEAHHRHKVDAPSGTALAMGEAIAHALDK 184 (273)
T ss_dssp EEEE-EEEECTTCCSSSCHHHHHHHHHHHHHTTC
T ss_pred CEEE-EEeecCCCCCCCCHHHHHHHHHHHHhhCC
Confidence 2322 22232 3 689999999999888874
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.016 Score=54.57 Aligned_cols=88 Identities=10% Similarity=0.118 Sum_probs=61.4
Q ss_pred cccchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhH-HHHHHcCceecCCCcCCHHhhcCcC
Q 014834 101 FKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEENGTLGDIYETISGS 179 (417)
Q Consensus 101 f~~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~-~~A~~~G~~~~~~~~~s~~Ea~~~A 179 (417)
||.. -.++| ++|-|||.|.+|..-++.|.+. |.+|+|......... +.+.+.++....+. .+ ++-+.++
T Consensus 23 ~Pif-l~L~g-k~VLVVGgG~va~~ka~~Ll~~------GA~VtVvap~~~~~l~~l~~~~~i~~i~~~-~~-~~dL~~a 92 (223)
T 3dfz_A 23 YTVM-LDLKG-RSVLVVGGGTIATRRIKGFLQE------GAAITVVAPTVSAEINEWEAKGQLRVKRKK-VG-EEDLLNV 92 (223)
T ss_dssp CEEE-ECCTT-CCEEEECCSHHHHHHHHHHGGG------CCCEEEECSSCCHHHHHHHHTTSCEEECSC-CC-GGGSSSC
T ss_pred cccE-EEcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCCCCHHHHHHHHcCCcEEEECC-CC-HhHhCCC
Confidence 6655 56899 9999999999999999999999 988887765533333 34443334432222 12 3457889
Q ss_pred CEEEEccCCchHHHHHHHH
Q 014834 180 DLVLLLISDAAQADNYEKI 198 (417)
Q Consensus 180 DIViLavpd~~~~~Vl~eI 198 (417)
|+||.++.+......+.+.
T Consensus 93 dLVIaAT~d~~~N~~I~~~ 111 (223)
T 3dfz_A 93 FFIVVATNDQAVNKFVKQH 111 (223)
T ss_dssp SEEEECCCCTHHHHHHHHH
T ss_pred CEEEECCCCHHHHHHHHHH
Confidence 9999999887765544444
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.014 Score=58.25 Aligned_cols=74 Identities=16% Similarity=0.120 Sum_probs=47.3
Q ss_pred hhccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhHHHHHH--c-CceecC-CCcCCHHhhcCc
Q 014834 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--A-GFTEEN-GTLGDIYETISG 178 (417)
Q Consensus 106 ~~l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~~~A~~--~-G~~~~~-~~~~s~~Ea~~~ 178 (417)
+++.+ +||+|||. |.+|.++|..+... |+ +|++.+....+....+.+ . .+...+ ....+..+++++
T Consensus 4 ~~~~~-~KV~ViGaaG~VG~~~a~~l~~~------g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~d 76 (343)
T 3fi9_A 4 SYLTE-EKLTIVGAAGMIGSNMAQTAAMM------RLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTD 76 (343)
T ss_dssp CCSCS-SEEEEETTTSHHHHHHHHHHHHT------TCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTT
T ss_pred cccCC-CEEEEECCCChHHHHHHHHHHhc------CCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCC
Confidence 34455 89999998 99999999998887 75 676665543322211111 1 111000 012467888999
Q ss_pred CCEEEEcc
Q 014834 179 SDLVLLLI 186 (417)
Q Consensus 179 ADIViLav 186 (417)
||+||++.
T Consensus 77 ADvVvita 84 (343)
T 3fi9_A 77 AKYIVSSG 84 (343)
T ss_dssp EEEEEECC
T ss_pred CCEEEEcc
Confidence 99999985
|
| >2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0031 Score=65.14 Aligned_cols=87 Identities=17% Similarity=0.161 Sum_probs=64.9
Q ss_pred CEEEEEccc----chHHHHHHHHHhhhhhhcCC-cEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 112 NQIGVIGWG----SQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G----~mG~AiA~~Lr~s~~~~~~G-~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
++|+|||.+ +.|..+.++|++. | ..|+-.+.. ... -.|... ..++.|+-+..|++++++
T Consensus 9 ~siAVvGas~~~~~~g~~v~~~l~~~------g~~~v~pVnP~-~~~-----i~G~~~----y~sl~~lp~~~Dlavi~v 72 (457)
T 2csu_A 9 KGIAVIGASNDPKKLGYEVFKNLKEY------KKGKVYPVNIK-EEE-----VQGVKA----YKSVKDIPDEIDLAIIVV 72 (457)
T ss_dssp SEEEEETCCSCTTSHHHHHHHHHTTC------CSSEEEEECSS-CSE-----ETTEEC----BSSTTSCSSCCSEEEECS
T ss_pred CeEEEECcCCCCCchHHHHHHHHHHc------CCCEEEEECCC-CCe-----ECCEec----cCCHHHcCCCCCEEEEec
Confidence 899999998 7899999999887 5 444433332 111 147765 567888888899999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCch
Q 014834 187 SDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiLi~a~G~~ 215 (417)
|+....++++++... ....+|+++.||.
T Consensus 73 p~~~~~~~v~e~~~~-Gi~~vv~~s~G~~ 100 (457)
T 2csu_A 73 PKRFVKDTLIQCGEK-GVKGVVIITAGFG 100 (457)
T ss_dssp CHHHHHHHHHHHHHH-TCCEEEECCCSST
T ss_pred CHHHHHHHHHHHHHc-CCCEEEEecCCCC
Confidence 999999999886543 2344778898984
|
| >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.005 Score=59.27 Aligned_cols=80 Identities=15% Similarity=0.017 Sum_probs=54.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~~ 191 (417)
++|++||+|+||..+++. . ++++...+. ++.. +.|+.. +.|+++++.++|+|+-|.++.+.
T Consensus 13 ~rV~i~G~GaIG~~v~~~-~--------~leLv~v~~--~k~g----elgv~a----~~d~d~lla~pD~VVe~A~~~av 73 (253)
T 1j5p_A 13 MTVLIIGMGNIGKKLVEL-G--------NFEKIYAYD--RISK----DIPGVV----RLDEFQVPSDVSTVVECASPEAV 73 (253)
T ss_dssp CEEEEECCSHHHHHHHHH-S--------CCSEEEEEC--SSCC----CCSSSE----ECSSCCCCTTCCEEEECSCHHHH
T ss_pred ceEEEECcCHHHHHHHhc-C--------CcEEEEEEe--cccc----ccCcee----eCCHHHHhhCCCEEEECCCHHHH
Confidence 799999999999999987 2 454432222 2211 226544 56788888899999999987655
Q ss_pred HHHHHHHHhcCCCCcEEE-EecC
Q 014834 192 ADNYEKIFSCMKPNSILG-LSHG 213 (417)
Q Consensus 192 ~~Vl~eI~~~lk~gaiLi-~a~G 213 (417)
.+.+ .+.|+.|.-|+ .+-|
T Consensus 74 ~e~~---~~iL~aG~dvv~~S~g 93 (253)
T 1j5p_A 74 KEYS---LQILKNPVNYIIISTS 93 (253)
T ss_dssp HHHH---HHHTTSSSEEEECCGG
T ss_pred HHHH---HHHHHCCCCEEEcChh
Confidence 5544 44577787555 4444
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.012 Score=58.44 Aligned_cols=95 Identities=16% Similarity=0.085 Sum_probs=58.4
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecC-ChhhHHHHHHcCcee--------cCCCc--CCHHhhcC-c
Q 014834 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTE--------ENGTL--GDIYETIS-G 178 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~-~s~s~~~A~~~G~~~--------~~~~~--~s~~Ea~~-~ 178 (417)
+||+||| .|.+|..+++.|.+. .+++|+...++ .+.........+... .+-.+ .+.++..+ +
T Consensus 9 ~kV~IiGAtG~iG~~llr~L~~~-----p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (354)
T 1ys4_A 9 IKVGVLGATGSVGQRFVQLLADH-----PMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEFED 83 (354)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTC-----SSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTSGGGTT
T ss_pred ceEEEECcCCHHHHHHHHHHhcC-----CCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHHHHhcCC
Confidence 6899999 899999999998765 13566544432 111111122222110 00001 14455556 8
Q ss_pred CCEEEEccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 179 ADIViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
+|+||+|+|.....++.+.+. +.|..|++.+|.
T Consensus 84 ~DvV~~atp~~~~~~~a~~~~---~aG~~VId~s~~ 116 (354)
T 1ys4_A 84 VDIVFSALPSDLAKKFEPEFA---KEGKLIFSNASA 116 (354)
T ss_dssp CCEEEECCCHHHHHHHHHHHH---HTTCEEEECCST
T ss_pred CCEEEECCCchHHHHHHHHHH---HCCCEEEECCch
Confidence 999999999988877776654 357778887774
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=96.13 E-value=0.017 Score=56.10 Aligned_cols=92 Identities=11% Similarity=0.180 Sum_probs=61.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCH---Hhh-cCcCCEEEEccC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI---YET-ISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~---~Ea-~~~ADIViLavp 187 (417)
++|.|+|+|..|..+++.|.+. |+ |++.+++ +...+ +++.|+....|...+. +++ +++||.|+++++
T Consensus 116 ~~viI~G~G~~g~~l~~~L~~~------g~-v~vid~~-~~~~~-~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~ 186 (336)
T 1lnq_A 116 RHVVICGWSESTLECLRELRGS------EV-FVLAEDE-NVRKK-VLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLE 186 (336)
T ss_dssp CEEEEESCCHHHHHHHTTGGGS------CE-EEEESCG-GGHHH-HHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECCS
T ss_pred CCEEEECCcHHHHHHHHHHHhC------Cc-EEEEeCC-hhhhh-HHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcCC
Confidence 6899999999999999999988 88 7665544 44455 6667765433333333 334 789999999999
Q ss_pred CchHHHHHHHHHhcCCCC-cEEEEec
Q 014834 188 DAAQADNYEKIFSCMKPN-SILGLSH 212 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~g-aiLi~a~ 212 (417)
+....-..-.....+.|. .++.-+.
T Consensus 187 ~d~~n~~~~~~ar~~~~~~~iiar~~ 212 (336)
T 1lnq_A 187 SDSETIHCILGIRKIDESVRIIAEAE 212 (336)
T ss_dssp SHHHHHHHHHHHHTTCTTSEEEEECS
T ss_pred ccHHHHHHHHHHHHHCCCCeEEEEEC
Confidence 875443333444455565 4555443
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.021 Score=55.81 Aligned_cols=70 Identities=17% Similarity=0.077 Sum_probs=51.0
Q ss_pred CCEEEEEcccchHHH-HHHHHHhhhhhhcCCcEEEEEecCCh-hhHHHHHHcCceecCCCcCCHHhhc-CcCCEEEEc--
Q 014834 111 INQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLL-- 185 (417)
Q Consensus 111 mkkIgIIG~G~mG~A-iA~~Lr~s~~~~~~G~~ViVg~r~~s-~s~~~A~~~G~~~~~~~~~s~~Ea~-~~ADIViLa-- 185 (417)
||+|.|||.|-+|.+ +|+.|++. |++|.+.++... ...+..++.|+....+ .+.+++. .++|+||+.
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~~------G~~V~~~D~~~~~~~~~~L~~~gi~v~~g--~~~~~l~~~~~d~vV~Spg 75 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKEA------GFEVSGCDAKMYPPMSTQLEALGIDVYEG--FDAAQLDEFKADVYVIGNV 75 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHHT------TCEEEEEESSCCTTHHHHHHHTTCEEEES--CCGGGGGSCCCSEEEECTT
T ss_pred CcEEEEEEECHHHHHHHHHHHHhC------CCEEEEEcCCCCcHHHHHHHhCCCEEECC--CCHHHcCCCCCCEEEECCC
Confidence 589999999999995 99999999 999998887543 2344556678765211 2444554 579999985
Q ss_pred cCC
Q 014834 186 ISD 188 (417)
Q Consensus 186 vpd 188 (417)
+|+
T Consensus 76 i~~ 78 (326)
T 3eag_A 76 AKR 78 (326)
T ss_dssp CCT
T ss_pred cCC
Confidence 554
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.014 Score=58.13 Aligned_cols=94 Identities=11% Similarity=0.041 Sum_probs=57.3
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCcee--cCCCcCCHHhhcCcCCEEEEccC
Q 014834 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE--ENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 111 mkkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~--~~~~~~s~~Ea~~~ADIViLavp 187 (417)
|+||+||| .|.+|..+.+.|.+. ..++++...+..+...+.....+... .+-.+.+.++ +.++|+||+|+|
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~-----p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~~~~~~~-~~~vDvV~~a~g 77 (345)
T 2ozp_A 4 KKTLSIVGASGYAGGEFLRLALSH-----PYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKFVPPEK-LEPADILVLALP 77 (345)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTC-----TTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCBCBCGGG-CCCCSEEEECCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHcC-----CCcEEEEEECchhhCchhHHhCchhcCcccccccchhH-hcCCCEEEEcCC
Confidence 36899999 699999999999865 13465544443221111111111100 0001223334 578999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecC
Q 014834 188 DAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~gaiLi~a~G 213 (417)
.....++.+... +.|..|++.++
T Consensus 78 ~~~s~~~a~~~~---~aG~~VId~Sa 100 (345)
T 2ozp_A 78 HGVFAREFDRYS---ALAPVLVDLSA 100 (345)
T ss_dssp TTHHHHTHHHHH---TTCSEEEECSS
T ss_pred cHHHHHHHHHHH---HCCCEEEEcCc
Confidence 988877776543 56777887776
|
| >3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.019 Score=56.78 Aligned_cols=97 Identities=15% Similarity=0.156 Sum_probs=55.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcC--CcEEE-EEecCCh--------hhH-HHHHHcCceecCCCcCCHHhhcC--
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKS--DIVVK-VGLRKGS--------RSF-AEARAAGFTEENGTLGDIYETIS-- 177 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~--G~~Vi-Vg~r~~s--------~s~-~~A~~~G~~~~~~~~~s~~Ea~~-- 177 (417)
.+|+|||+|+||..+++.|.+. .+.+. +++|+ |.+++.. ..+ +.+.+.|... +-.. +..+.+.
T Consensus 5 irVgIiG~G~VG~~~~~~L~~~-~~~~~g~~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~~~-~~~~-d~~e~l~~~ 81 (325)
T 3ing_A 5 IRIILMGTGNVGLNVLRIIDAS-NRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTGRIS-DRAF-SGPEDLMGE 81 (325)
T ss_dssp EEEEEECCSHHHHHHHHHHHHH-HHHC--CEEEEEEEECSSBEEECSSCCHHHHHHHHHHHSCSC-SSBC-CSGGGGTTS
T ss_pred EEEEEEcCcHHHHHHHHHHHhc-hhhccCCCEEEEEEEecChhhcccccCHHHHHHHhhhcCCCC-cccC-CHHHHhcCC
Confidence 3799999999999999999873 11122 34443 3333321 012 2333445221 0012 5566664
Q ss_pred cCCEEEEccCCchHH-HHHHHHHhcCCCCcEEEEe
Q 014834 178 GSDLVLLLISDAAQA-DNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 178 ~ADIViLavpd~~~~-~Vl~eI~~~lk~gaiLi~a 211 (417)
+.|+|+.++|+..+. ..++-+...|+.|+-|+.+
T Consensus 82 ~iDvVVe~T~~~~~~~pa~~~~~~aL~aGkhVVta 116 (325)
T 3ing_A 82 AADLLVDCTPASRDGVREYSLYRMAFESGMNVVTA 116 (325)
T ss_dssp CCSEEEECCCCCSSSHHHHHHHHHHHHTTCEEEEC
T ss_pred CCCEEEECCCCccccchHHHHHHHHHHCCCeEEEc
Confidence 589999999987542 2344445556677766543
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=95.86 E-value=0.04 Score=54.15 Aligned_cols=67 Identities=13% Similarity=0.180 Sum_probs=44.5
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCC--cEEEEEecCChhhHHHHH--Hc-Cc--eecCCC--cCCHHhhcCcCCE
Q 014834 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSD--IVVKVGLRKGSRSFAEAR--AA-GF--TEENGT--LGDIYETISGSDL 181 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G--~~ViVg~r~~s~s~~~A~--~~-G~--~~~~~~--~~s~~Ea~~~ADI 181 (417)
+||+||| .|.+|.+++..|.+. | .+|.+.+.... ...+. .. .. .. ... ..+.++++++||+
T Consensus 9 mKI~ViGAaG~VG~~la~~L~~~------g~~~ev~l~Di~~~--~~~~~dL~~~~~~~~v-~~~~~t~d~~~al~gaDv 79 (326)
T 1smk_A 9 FKVAILGAAGGIGQPLAMLMKMN------PLVSVLHLYDVVNA--PGVTADISHMDTGAVV-RGFLGQQQLEAALTGMDL 79 (326)
T ss_dssp EEEEEETTTSTTHHHHHHHHHHC------TTEEEEEEEESSSH--HHHHHHHHTSCSSCEE-EEEESHHHHHHHHTTCSE
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCCEEEEEeCCCc--HhHHHHhhcccccceE-EEEeCCCCHHHHcCCCCE
Confidence 7999999 899999999999887 7 56766554433 22221 11 11 11 000 1256788999999
Q ss_pred EEEccC
Q 014834 182 VLLLIS 187 (417)
Q Consensus 182 ViLavp 187 (417)
||++.+
T Consensus 80 Vi~~ag 85 (326)
T 1smk_A 80 IIVPAG 85 (326)
T ss_dssp EEECCC
T ss_pred EEEcCC
Confidence 999975
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=95.81 E-value=0.017 Score=57.72 Aligned_cols=92 Identities=11% Similarity=0.039 Sum_probs=57.6
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCcee----cCCCcCCHHhhcCcCCEEEEcc
Q 014834 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE----ENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~----~~~~~~s~~Ea~~~ADIViLav 186 (417)
.||+|+| .|.+|..+.+.|.+. ..++++...+..+...+.....+... .+-.+.+ ++...++|+||+|+
T Consensus 17 ~kV~IiGAtG~iG~~llr~L~~~-----p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~~~-~~~~~~vDvVf~at 90 (359)
T 1xyg_A 17 IRIGLLGASGYTGAEIVRLLANH-----PHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSVK-DADFSTVDAVFCCL 90 (359)
T ss_dssp EEEEEECCSSHHHHHHHHHHHTC-----SSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCGG-GCCGGGCSEEEECC
T ss_pred cEEEEECcCCHHHHHHHHHHHcC-----CCcEEEEEeCchhcCCCHHHhCchhcCcccccceecc-hhHhcCCCEEEEcC
Confidence 5899999 899999999999876 13466544443222222222222110 0000122 44556899999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecC
Q 014834 187 SDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiLi~a~G 213 (417)
|.....+.... + +.|..+++.++
T Consensus 91 p~~~s~~~a~~---~-~aG~~VId~sa 113 (359)
T 1xyg_A 91 PHGTTQEIIKE---L-PTALKIVDLSA 113 (359)
T ss_dssp CTTTHHHHHHT---S-CTTCEEEECSS
T ss_pred CchhHHHHHHH---H-hCCCEEEECCc
Confidence 99887666543 3 66888888776
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.015 Score=56.96 Aligned_cols=68 Identities=16% Similarity=0.127 Sum_probs=43.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhHHHHHHc-------CceecCCCcCCHHhhcCcCCEE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA-------GFTEENGTLGDIYETISGSDLV 182 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~~~A~~~-------G~~~~~~~~~s~~Ea~~~ADIV 182 (417)
|||+|||.|.+|.++|..|..+ ++ ++.+.+....+..-.|.+. +.... -...+..+.+++||+|
T Consensus 1 MKV~IiGaG~VG~~~a~~l~~~------~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~-i~~~~d~~~~~~aDvV 73 (294)
T 2x0j_A 1 MKLGFVGAGRVGSTSAFTCLLN------LDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPK-IVGGADYSLLKGSEII 73 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------SCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCE-EEEESCGGGGTTCSEE
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCe-EecCCCHHHhCCCCEE
Confidence 6899999999999999999888 65 6666665433332222221 11000 0012223678999999
Q ss_pred EEcc
Q 014834 183 LLLI 186 (417)
Q Consensus 183 iLav 186 (417)
+++.
T Consensus 74 vitA 77 (294)
T 2x0j_A 74 VVTA 77 (294)
T ss_dssp EECC
T ss_pred EEec
Confidence 9974
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=95.80 E-value=0.018 Score=57.45 Aligned_cols=93 Identities=16% Similarity=0.212 Sum_probs=57.8
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCC---h--hhHHHHH--HcCceecCCCcC---CHHhhcCcC
Q 014834 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG---S--RSFAEAR--AAGFTEENGTLG---DIYETISGS 179 (417)
Q Consensus 111 mkkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~---s--~s~~~A~--~~G~~~~~~~~~---s~~Ea~~~A 179 (417)
|+||+||| .|.+|..+.+.|.+. ..+++.....+. + +.....- -.|... -.+. +.++.++++
T Consensus 4 M~kv~IvGatG~vG~~l~~~L~~~-----p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~--~~v~~~~~~~~~~~~~ 76 (337)
T 3dr3_A 4 MLNTLIVGASGYAGAELVTYVNRH-----PHMNITALTVSAQSNDAGKLISDLHPQLKGIVE--LPLQPMSDISEFSPGV 76 (337)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHC-----TTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCC--CBEEEESSGGGTCTTC
T ss_pred ceEEEEECCCChHHHHHHHHHHhC-----CCCcEEEEEecCchhhcCCchHHhCccccCccc--eeEeccCCHHHHhcCC
Confidence 57999999 599999999988874 145554332221 1 2222110 012110 0111 344555899
Q ss_pred CEEEEccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 014834 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 180 DIViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~G 213 (417)
|+||+|+|.....+..+++. +.|..|++.++
T Consensus 77 Dvvf~a~p~~~s~~~~~~~~---~~g~~vIDlSa 107 (337)
T 3dr3_A 77 DVVFLATAHEVSHDLAPQFL---EAGCVVFDLSG 107 (337)
T ss_dssp SEEEECSCHHHHHHHHHHHH---HTTCEEEECSS
T ss_pred CEEEECCChHHHHHHHHHHH---HCCCEEEEcCC
Confidence 99999999888777777654 46788887766
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=95.75 E-value=0.038 Score=57.05 Aligned_cols=74 Identities=20% Similarity=0.093 Sum_probs=45.6
Q ss_pred CEEEEEcccch-HHHHHHHHHh--hhhhhcC-CcEEEEEecCC--hhhHH---HHH----HcCceecCCCcCCHHhhcCc
Q 014834 112 NQIGVIGWGSQ-GPAQAQNLRD--SLAEAKS-DIVVKVGLRKG--SRSFA---EAR----AAGFTEENGTLGDIYETISG 178 (417)
Q Consensus 112 kkIgIIG~G~m-G~AiA~~Lr~--s~~~~~~-G~~ViVg~r~~--s~s~~---~A~----~~G~~~~~~~~~s~~Ea~~~ 178 (417)
+||+|||.|+. |.+++..|.. . +. +.+|+++++.. ++... .+. ..+....=....|..+++++
T Consensus 8 ~KIaVIGaGsv~~~al~~~L~~~~~----~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~eal~g 83 (450)
T 1s6y_A 8 LKIATIGGGSSYTPELVEGLIKRYH----ELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDG 83 (450)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTT----TCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTT
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCC----CCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHHhCC
Confidence 69999999998 8887777765 3 11 22677776654 32111 111 12211000013577889999
Q ss_pred CCEEEEccCCc
Q 014834 179 SDLVLLLISDA 189 (417)
Q Consensus 179 ADIViLavpd~ 189 (417)
||+||++++..
T Consensus 84 AD~VVitagv~ 94 (450)
T 1s6y_A 84 ADFVTTQFRVG 94 (450)
T ss_dssp CSEEEECCCTT
T ss_pred CCEEEEcCCCC
Confidence 99999999964
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=95.72 E-value=0.04 Score=57.29 Aligned_cols=75 Identities=19% Similarity=0.058 Sum_probs=44.8
Q ss_pred CEEEEEcccch-HHHHHHHHHhhhhhhcC-CcEEEEEecCChhhHH---HHH----HcCc--eecCCCcCCHHhhcCcCC
Q 014834 112 NQIGVIGWGSQ-GPAQAQNLRDSLAEAKS-DIVVKVGLRKGSRSFA---EAR----AAGF--TEENGTLGDIYETISGSD 180 (417)
Q Consensus 112 kkIgIIG~G~m-G~AiA~~Lr~s~~~~~~-G~~ViVg~r~~s~s~~---~A~----~~G~--~~~~~~~~s~~Ea~~~AD 180 (417)
+||+|||.|+. |.+++..|... ..+. +.+|.++++..++... ... ..+. .. ....|.++++++||
T Consensus 29 ~KIaVIGaGsv~~~ala~~L~~~--~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I--~~t~D~~eal~~AD 104 (472)
T 1u8x_X 29 FSIVIAGGGSTFTPGIVLMLLDH--LEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEF--AATTDPEEAFTDVD 104 (472)
T ss_dssp EEEEEECTTSSSHHHHHHHHHHT--TTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEE--EEESCHHHHHSSCS
T ss_pred CEEEEECCCHHHHHHHHHHHHhC--CCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEE--EEECCHHHHHcCCC
Confidence 59999999998 66666666543 0011 3367777665432111 111 1111 11 01357788999999
Q ss_pred EEEEccCCch
Q 014834 181 LVLLLISDAA 190 (417)
Q Consensus 181 IViLavpd~~ 190 (417)
+||+++|...
T Consensus 105 ~VViaag~~~ 114 (472)
T 1u8x_X 105 FVMAHIRVGK 114 (472)
T ss_dssp EEEECCCTTH
T ss_pred EEEEcCCCcc
Confidence 9999998743
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.032 Score=53.15 Aligned_cols=144 Identities=16% Similarity=0.197 Sum_probs=82.0
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhc-CcCCEEEEccCCc
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~-~~ADIViLavpd~ 189 (417)
+||+|+|+ |.||..+++.+.+. .+++++...+.. .++++++ .++|+||=.++|.
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~-----~~~elva~~d~~-------------------~dl~~~~~~~~DvvIDfT~p~ 56 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAA-----DDLTLSAELDAG-------------------DPLSLLTDGNTEVVIDFTHPD 56 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHC-----TTCEEEEEECTT-------------------CCTHHHHHTTCCEEEECSCTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEccC-------------------CCHHHHhccCCcEEEEccChH
Confidence 48999996 99999999998753 167776554432 1233444 3789999888888
Q ss_pred hHHHHHHHHHhcCCCCc-EEEEecCchhhhhhhcccCCC--CCccEEEeccCCCchh--HHHHHhhcccccCCCceEEEe
Q 014834 190 AQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSIGLDFP--KNIGVIAVCPKGMGPS--VRRLYVQGKEINGAGINSSFA 264 (417)
Q Consensus 190 ~~~~Vl~eI~~~lk~ga-iLi~a~G~~i~~~~~~~i~~~--~dv~VI~v~Pntpg~~--vr~ly~~G~~~~G~Gv~~lia 264 (417)
...+.+..... .|. +|+-+.|++-...+....... +++. +...||+.--+ +..+.+.--... .-+-. +-
T Consensus 57 a~~~~~~~a~~---~g~~~VigTTG~~~e~~~~l~~aa~~~~~~~-vv~a~N~siGv~ll~~l~~~aa~~~-~dieI-iE 130 (245)
T 1p9l_A 57 VVMGNLEFLID---NGIHAVVGTTGFTAERFQQVESWLVAKPNTS-VLIAPNFAIGAVLSMHFAKQAARFF-DSAEV-IE 130 (245)
T ss_dssp THHHHHHHHHH---TTCEEEECCCCCCHHHHHHHHHHHHTSTTCE-EEECSCCCHHHHHHHHHHHHHGGGC-SEEEE-EE
T ss_pred HHHHHHHHHHH---cCCCEEEcCCCCCHHHHHHHHHHHHhCCCCC-EEEECCccHHHHHHHHHHHHHHhhc-CCEEE-EE
Confidence 87777765443 344 455566886543221000101 1333 45678876543 112222111111 11222 22
Q ss_pred ecC----C-CCHHHHHHHHHHHHHhC
Q 014834 265 VHQ----D-VDGRATNVALGWSVALG 285 (417)
Q Consensus 265 v~~----d-vsgea~e~a~~L~~alG 285 (417)
.|. | +||.++.++..+....+
T Consensus 131 ~HH~~K~DaPSGTA~~lae~i~~~~~ 156 (245)
T 1p9l_A 131 LHHPHKADAPSGTAARTAKLIAEARK 156 (245)
T ss_dssp EECTTCCSSSCHHHHHHHHHHHHHTT
T ss_pred CcccCCCCCCCHHHHHHHHHHHHhhc
Confidence 233 3 58999999999987765
|
| >1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A | Back alignment and structure |
|---|
Probab=95.71 E-value=0.057 Score=53.83 Aligned_cols=70 Identities=19% Similarity=0.149 Sum_probs=52.4
Q ss_pred hccCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecCC----hhhHH----HHHHcC--ceecCCCcCCHHh
Q 014834 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAG--FTEENGTLGDIYE 174 (417)
Q Consensus 107 ~l~gmkkIgIIG~G--~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~----s~s~~----~A~~~G--~~~~~~~~~s~~E 174 (417)
.|+| .||++||=| +++.+++..+..- |++|.+..... ..-.+ .|++.| +.. +.+++|
T Consensus 152 ~l~g-l~va~vGD~~~~va~Sl~~~~~~~------G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~----~~d~~e 220 (335)
T 1dxh_A 152 PLHD-ISYAYLGDARNNMGNSLLLIGAKL------GMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTL----TEDPKE 220 (335)
T ss_dssp CGGG-CEEEEESCCSSHHHHHHHHHHHHT------TCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEE----ESCHHH
T ss_pred CcCC-eEEEEecCCccchHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEE----EeCHHH
Confidence 5788 899999986 9999999999988 99987765431 11222 333667 433 578999
Q ss_pred hcCcCCEEEEccC
Q 014834 175 TISGSDLVLLLIS 187 (417)
Q Consensus 175 a~~~ADIViLavp 187 (417)
+++++|+|...+=
T Consensus 221 av~~aDvvytd~w 233 (335)
T 1dxh_A 221 AVKGVDFVHTDVW 233 (335)
T ss_dssp HTTTCSEEEECCC
T ss_pred HhCCCCEEEeCCc
Confidence 9999999998543
|
| >1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.053 Score=54.07 Aligned_cols=70 Identities=16% Similarity=0.193 Sum_probs=52.5
Q ss_pred hccCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecCC----hhhHH----HHHHcC--ceecCCCcCCHHh
Q 014834 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAG--FTEENGTLGDIYE 174 (417)
Q Consensus 107 ~l~gmkkIgIIG~G--~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~----s~s~~----~A~~~G--~~~~~~~~~s~~E 174 (417)
.|+| .||++||=| +++.+++..+..- |++|.+..... ..-.+ .|++.| +.. +.+++|
T Consensus 152 ~l~g-l~ia~vGD~~~~va~Sl~~~~~~~------G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~----~~d~~e 220 (333)
T 1duv_G 152 AFNE-MTLVYAGDARNNMGNSMLEAAALT------GLDLRLVAPQACWPEAALVTECRALAQQNGGNITL----TEDVAK 220 (333)
T ss_dssp CGGG-CEEEEESCTTSHHHHHHHHHHHHH------CCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEE----ESCHHH
T ss_pred CCCC-cEEEEECCCccchHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEE----EECHHH
Confidence 5778 899999986 9999999999988 99987765431 11222 334677 333 578999
Q ss_pred hcCcCCEEEEccC
Q 014834 175 TISGSDLVLLLIS 187 (417)
Q Consensus 175 a~~~ADIViLavp 187 (417)
++++||+|...+=
T Consensus 221 av~~aDvvytd~w 233 (333)
T 1duv_G 221 GVEGADFIYTDVW 233 (333)
T ss_dssp HHTTCSEEEECCS
T ss_pred HhCCCCEEEeCCc
Confidence 9999999998544
|
| >2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.022 Score=58.78 Aligned_cols=93 Identities=13% Similarity=0.147 Sum_probs=63.7
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc---EEEEEe----cC----Chhh---H-----HHHHHcCceecC
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---VVKVGL----RK----GSRS---F-----AEARAAGFTEEN 166 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~---~ViVg~----r~----~s~s---~-----~~A~~~G~~~~~ 166 (417)
..+++ ++|.|+|.|.+|.+++..|.+. |. +|++.+ |+ .... . ..+...+..
T Consensus 182 ~~l~~-~rvlvlGAGgAg~aia~~L~~~------G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~--- 251 (439)
T 2dvm_A 182 KKISE-ITLALFGAGAAGFATLRILTEA------GVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGE--- 251 (439)
T ss_dssp CCTTT-CCEEEECCSHHHHHHHHHHHHT------TCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTTSCTT---
T ss_pred CCccC-CEEEEECccHHHHHHHHHHHHc------CCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhccccc---
Confidence 34677 8999999999999999999998 87 788888 75 2111 1 011111110
Q ss_pred CCcCCHHhhcCcCCEEEEccCC--chHHHHHHHHHhcCCCCcEEEEe
Q 014834 167 GTLGDIYETISGSDLVLLLISD--AAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 167 ~~~~s~~Ea~~~ADIViLavpd--~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
....++.|+++++|+||-++|. ....+ +....|.++.+|.+.
T Consensus 252 ~~~~~L~e~l~~aDVlInaT~~~~G~~~~---e~v~~m~~~~iVfDL 295 (439)
T 2dvm_A 252 NIEGGPQEALKDADVLISFTRPGPGVIKP---QWIEKMNEDAIVFPL 295 (439)
T ss_dssp CCCSSHHHHHTTCSEEEECSCCCSSSSCH---HHHTTSCTTCEEEEC
T ss_pred cccccHHHHhccCCEEEEcCCCccCCCCh---HHHHhcCCCCEEEEC
Confidence 0134688999999999999997 55432 234457777777765
|
| >1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A | Back alignment and structure |
|---|
Probab=95.70 E-value=0.073 Score=52.64 Aligned_cols=69 Identities=16% Similarity=0.209 Sum_probs=51.8
Q ss_pred hccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC----hhhHH----HHHHcC--ceecCCCcCCHHhh
Q 014834 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAG--FTEENGTLGDIYET 175 (417)
Q Consensus 107 ~l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~----s~s~~----~A~~~G--~~~~~~~~~s~~Ea 175 (417)
.|+| .||++||= +++..+++..+..- |.+|.+..... ..-.+ .|++.| +.. +.+++|+
T Consensus 152 ~l~g-l~va~vGD~~rva~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~----~~d~~ea 220 (315)
T 1pvv_A 152 TIKG-VKVVYVGDGNNVAHSLMIAGTKL------GADVVVATPEGYEPDEKVIKWAEQNAAESGGSFEL----LHDPVKA 220 (315)
T ss_dssp CCTT-CEEEEESCCCHHHHHHHHHHHHT------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEE----ESCHHHH
T ss_pred CcCC-cEEEEECCCcchHHHHHHHHHHC------CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEE----EeCHHHH
Confidence 4788 89999997 79999999999888 99988775432 11222 333667 333 5789999
Q ss_pred cCcCCEEEEcc
Q 014834 176 ISGSDLVLLLI 186 (417)
Q Consensus 176 ~~~ADIViLav 186 (417)
++++|+|+..+
T Consensus 221 v~~aDvvy~~~ 231 (315)
T 1pvv_A 221 VKDADVIYTDV 231 (315)
T ss_dssp TTTCSEEEECC
T ss_pred hCCCCEEEEcc
Confidence 99999999854
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.04 Score=49.53 Aligned_cols=73 Identities=15% Similarity=0.207 Sum_probs=48.9
Q ss_pred CCEEEEEc-ccchHHHHHHHHH-hhhhhhcCCcEEEEEecCCh-hhHHHH-HHcCceecCCCcCC---HHhhcCcCCEEE
Q 014834 111 INQIGVIG-WGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGS-RSFAEA-RAAGFTEENGTLGD---IYETISGSDLVL 183 (417)
Q Consensus 111 mkkIgIIG-~G~mG~AiA~~Lr-~s~~~~~~G~~ViVg~r~~s-~s~~~A-~~~G~~~~~~~~~s---~~Ea~~~ADIVi 183 (417)
||+|.|+| .|.+|.++++.|. +. |++|++..|+.+ +..+.+ ...++......+.+ +.++++++|+||
T Consensus 5 mk~vlVtGasg~iG~~~~~~l~~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv 78 (221)
T 3r6d_A 5 YXYITILGAAGQIAQXLTATLLTYT------DMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVF 78 (221)
T ss_dssp CSEEEEESTTSHHHHHHHHHHHHHC------CCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred EEEEEEEeCCcHHHHHHHHHHHhcC------CceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEE
Confidence 35699999 5999999999999 78 999988877644 322222 11222211111233 456788999999
Q ss_pred EccCCc
Q 014834 184 LLISDA 189 (417)
Q Consensus 184 Lavpd~ 189 (417)
.+....
T Consensus 79 ~~ag~~ 84 (221)
T 3r6d_A 79 VGAMES 84 (221)
T ss_dssp ESCCCC
T ss_pred EcCCCC
Confidence 998764
|
| >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 | Back alignment and structure |
|---|
Probab=95.65 E-value=0.051 Score=53.90 Aligned_cols=92 Identities=14% Similarity=0.125 Sum_probs=55.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC--ChhhHHHHHHc----C------------ceecCCC-----
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK--GSRSFAEARAA----G------------FTEENGT----- 168 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~--~s~s~~~A~~~----G------------~~~~~~~----- 168 (417)
.||||+|+|.+|.-+++.|.+. .+++|+..++. +........++ | +.. ++.
T Consensus 4 ikVgI~G~G~iGr~~~R~l~~~-----~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v-~g~~i~v~ 77 (335)
T 1u8f_O 4 VKVGVNGFGRIGRLVTRAAFNS-----GKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVI-NGNPITIF 77 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-----CSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEE-TTEEEEEE
T ss_pred eEEEEEccCHHHHHHHHHHHcC-----CCcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEE-CCeEEEEE
Confidence 5999999999999999998765 15676544442 22222211121 1 000 000
Q ss_pred -cCCHHhhc---CcCCEEEEccCCchHHHHHHHHHhcCCCCc-EEEEec
Q 014834 169 -LGDIYETI---SGSDLVLLLISDAAQADNYEKIFSCMKPNS-ILGLSH 212 (417)
Q Consensus 169 -~~s~~Ea~---~~ADIViLavpd~~~~~Vl~eI~~~lk~ga-iLi~a~ 212 (417)
..+++++- .++|+||.|+|.....+... .+++.|. .|.+++
T Consensus 78 ~~~d~~~l~~~~~~vDvV~eatg~~~~~e~a~---~~l~aGak~V~iSa 123 (335)
T 1u8f_O 78 QERDPSKIKWGDAGAEYVVESTGVFTTMEKAG---AHLQGGAKRVIISA 123 (335)
T ss_dssp CCSSGGGCCTTTTTCCEEEECSSSCCSHHHHG---GGGGGTCSEEEESS
T ss_pred ecCCHHHCccccCCCCEEEECCCchhhHHHHH---HHHhCCCeEEEecc
Confidence 12455541 57899999999988876654 4566674 444444
|
| >3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.036 Score=57.26 Aligned_cols=90 Identities=17% Similarity=0.251 Sum_probs=54.4
Q ss_pred EEEEEcccchHHHHHHHHHhhh---h-hhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcC--cCCEEEEcc
Q 014834 113 QIGVIGWGSQGPAQAQNLRDSL---A-EAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLI 186 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~---~-~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~--~ADIViLav 186 (417)
+|||||+|.+|..+++.|.+.. . ..+.+++|....+.+....+.. ..+... ..+.+++++ +.|+|+.++
T Consensus 12 rIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~-~~~~~~----~~d~~ell~d~diDvVve~t 86 (444)
T 3mtj_A 12 HVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEAL-AGGLPL----TTNPFDVVDDPEIDIVVELI 86 (444)
T ss_dssp EEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHH-HTTCCE----ESCTHHHHTCTTCCEEEECC
T ss_pred cEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhh-cccCcc----cCCHHHHhcCCCCCEEEEcC
Confidence 7999999999999998886421 1 1123555543333322211111 123332 467888886 579999999
Q ss_pred CC-chHHHHHHHHHhcCCCCcEEEE
Q 014834 187 SD-AAQADNYEKIFSCMKPNSILGL 210 (417)
Q Consensus 187 pd-~~~~~Vl~eI~~~lk~gaiLi~ 210 (417)
|+ ..+.++..+ .|+.|+-|+.
T Consensus 87 p~~~~h~~~~~~---AL~aGKhVvt 108 (444)
T 3mtj_A 87 GGLEPARELVMQ---AIANGKHVVT 108 (444)
T ss_dssp CSSTTHHHHHHH---HHHTTCEEEE
T ss_pred CCchHHHHHHHH---HHHcCCEEEE
Confidence 96 667666543 3345665543
|
| >1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1 | Back alignment and structure |
|---|
Probab=95.61 E-value=0.058 Score=53.59 Aligned_cols=70 Identities=11% Similarity=0.116 Sum_probs=52.2
Q ss_pred hccCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecCC----hhhHH----HHHHcC--ceecCCCcCCHHh
Q 014834 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAG--FTEENGTLGDIYE 174 (417)
Q Consensus 107 ~l~gmkkIgIIG~G--~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~----s~s~~----~A~~~G--~~~~~~~~~s~~E 174 (417)
.|+| .||++||=| ++..+++..+... |.+|.+..... ..-.+ .|++.| +.. +.+++|
T Consensus 164 ~l~g-l~va~vGD~~~rva~Sl~~~~~~~------G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~----~~d~~e 232 (325)
T 1vlv_A 164 RLKG-VKVVFMGDTRNNVATSLMIACAKM------GMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSF----TSNLEE 232 (325)
T ss_dssp CSTT-CEEEEESCTTSHHHHHHHHHHHHT------TCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEE----ESCHHH
T ss_pred CcCC-cEEEEECCCCcCcHHHHHHHHHHC------CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEE----EcCHHH
Confidence 4788 899999986 9999999999888 99988775431 11222 333667 333 578999
Q ss_pred hcCcCCEEEEccC
Q 014834 175 TISGSDLVLLLIS 187 (417)
Q Consensus 175 a~~~ADIViLavp 187 (417)
+++++|+|...+=
T Consensus 233 av~~aDvvyt~~w 245 (325)
T 1vlv_A 233 ALAGADVVYTDVW 245 (325)
T ss_dssp HHTTCSEEEECCC
T ss_pred HHccCCEEEeccc
Confidence 9999999998543
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.021 Score=58.32 Aligned_cols=74 Identities=19% Similarity=0.192 Sum_probs=53.4
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC---hhhHHHHHHcCceecCCCcCCHHhhcCc-CCE
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG---SRSFAEARAAGFTEENGTLGDIYETISG-SDL 181 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~---s~s~~~A~~~G~~~~~~~~~s~~Ea~~~-ADI 181 (417)
..++| |+|.|||+|..|.+.|+.|++. |++|.+.++.. +...+..++.|+....+ .+.++...+ +|+
T Consensus 5 ~~~~~-k~v~viG~G~sG~s~A~~l~~~------G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g--~~~~~~~~~~~d~ 75 (451)
T 3lk7_A 5 TTFEN-KKVLVLGLARSGEAAARLLAKL------GAIVTVNDGKPFDENPTAQSLLEEGIKVVCG--SHPLELLDEDFCY 75 (451)
T ss_dssp CTTTT-CEEEEECCTTTHHHHHHHHHHT------TCEEEEEESSCGGGCHHHHHHHHTTCEEEES--CCCGGGGGSCEEE
T ss_pred hhcCC-CEEEEEeeCHHHHHHHHHHHhC------CCEEEEEeCCcccCChHHHHHHhCCCEEEEC--CChHHhhcCCCCE
Confidence 34678 9999999999999999999999 99999888743 23344556678764211 123445566 899
Q ss_pred EEEc--cCC
Q 014834 182 VLLL--ISD 188 (417)
Q Consensus 182 ViLa--vpd 188 (417)
||+. +|+
T Consensus 76 vv~spgi~~ 84 (451)
T 3lk7_A 76 MIKNPGIPY 84 (451)
T ss_dssp EEECTTSCT
T ss_pred EEECCcCCC
Confidence 9985 554
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.034 Score=55.31 Aligned_cols=93 Identities=11% Similarity=0.067 Sum_probs=55.5
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEec-CChhhHHHHHHcCce--------ecCCCcC--CHHhhcCcC
Q 014834 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLR-KGSRSFAEARAAGFT--------EENGTLG--DIYETISGS 179 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r-~~s~s~~~A~~~G~~--------~~~~~~~--s~~Ea~~~A 179 (417)
.|||||| .|.+|.-+.+.|.+. ..++++...+ ..+.........++. ..+-.+. +.++ +.++
T Consensus 5 ~kV~IiGAtG~iG~~llr~L~~~-----p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~v 78 (350)
T 2ep5_A 5 IKVSLLGSTGMVGQKMVKMLAKH-----PYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNYED-HKDV 78 (350)
T ss_dssp EEEEEESCSSHHHHHHHHHHTTC-----SSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSGGG-GTTC
T ss_pred cEEEEECcCCHHHHHHHHHHHhC-----CCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCHHH-hcCC
Confidence 6899999 899999999988765 1346544432 111111122222211 0000011 3334 4789
Q ss_pred CEEEEccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 014834 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 180 DIViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~G 213 (417)
|+||+|+|.....++..... +.|..|++.++
T Consensus 79 DvVf~atp~~~s~~~a~~~~---~aG~~VId~s~ 109 (350)
T 2ep5_A 79 DVVLSALPNELAESIELELV---KNGKIVVSNAS 109 (350)
T ss_dssp SEEEECCCHHHHHHHHHHHH---HTTCEEEECSS
T ss_pred CEEEECCChHHHHHHHHHHH---HCCCEEEECCc
Confidence 99999999888877776544 35776777665
|
| >1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.037 Score=56.78 Aligned_cols=69 Identities=22% Similarity=0.208 Sum_probs=50.4
Q ss_pred ccCCCEEEEEcccchHHH-HHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 108 FNGINQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~A-iA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
+..+++|.|||+|-.|.+ +|+-|.+. |++|.+.+...+...+..++.|+....+ .+. +.++.+|+||+.
T Consensus 15 ~~~~~~i~viG~G~sG~s~~A~~l~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~~g--~~~-~~~~~a~~vv~s 84 (475)
T 1p3d_A 15 MRRVQQIHFIGIGGAGMSGIAEILLNE------GYQISGSDIADGVVTQRLAQAGAKIYIG--HAE-EHIEGASVVVVS 84 (475)
T ss_dssp CTTCCEEEEETTTSTTHHHHHHHHHHH------TCEEEEEESCCSHHHHHHHHTTCEEEES--CCG-GGGTTCSEEEEC
T ss_pred cccCCEEEEEeecHHHHHHHHHHHHhC------CCEEEEECCCCCHHHHHHHhCCCEEECC--CCH-HHcCCCCEEEEC
Confidence 344589999999999997 99999998 9999887766544444555678765222 122 346789999885
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=95.37 E-value=0.041 Score=52.05 Aligned_cols=87 Identities=15% Similarity=0.214 Sum_probs=55.6
Q ss_pred hhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCC-------------------hhhHHHHHH-----
Q 014834 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEARA----- 159 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~-------------------s~s~~~A~~----- 159 (417)
++.|++ ++|.|||+|-+|..++++|... |+ ++.+.++.. .+....++.
T Consensus 23 q~~l~~-~~VlvvG~GglG~~va~~La~~------Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n 95 (251)
T 1zud_1 23 QQKLLD-SQVLIIGLGGLGTPAALYLAGA------GVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLN 95 (251)
T ss_dssp HHHHHT-CEEEEECCSTTHHHHHHHHHHT------TCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHC
T ss_pred HHHHhc-CcEEEEccCHHHHHHHHHHHHc------CCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHC
Confidence 577888 9999999999999999999998 87 566654321 122222211
Q ss_pred cCcee--cCCCc--CCHHhhcCcCCEEEEccCCchHHHHHHHH
Q 014834 160 AGFTE--ENGTL--GDIYETISGSDLVLLLISDAAQADNYEKI 198 (417)
Q Consensus 160 ~G~~~--~~~~~--~s~~Ea~~~ADIViLavpd~~~~~Vl~eI 198 (417)
-++.. ..... .+..+.++++|+||.++........+.+.
T Consensus 96 p~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~ 138 (251)
T 1zud_1 96 PDIQLTALQQRLTGEALKDAVARADVVLDCTDNMATRQEINAA 138 (251)
T ss_dssp TTSEEEEECSCCCHHHHHHHHHHCSEEEECCSSHHHHHHHHHH
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHH
Confidence 12221 01111 12456778899999999876655555554
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.088 Score=46.62 Aligned_cols=69 Identities=16% Similarity=0.190 Sum_probs=47.6
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCC-HHhhcCcCCEEEEccCC
Q 014834 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD-IYETISGSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s-~~Ea~~~ADIViLavpd 188 (417)
|||.|+| .|.+|.++++.|.+. |++|++..|+.++..... .++......+.+ ..+++.++|+||.+...
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~ 71 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNR------GHEVTAIVRNAGKITQTH--KDINILQKDIFDLTLSDLSDQNVVVDAYGI 71 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCSHHHHHHC--SSSEEEECCGGGCCHHHHTTCSEEEECCCS
T ss_pred CeEEEEcCCchhHHHHHHHHHhC------CCEEEEEEcCchhhhhcc--CCCeEEeccccChhhhhhcCCCEEEECCcC
Confidence 5799999 599999999999999 999988888754432221 344321111111 11678899999998764
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=95.29 E-value=0.053 Score=52.68 Aligned_cols=66 Identities=26% Similarity=0.308 Sum_probs=41.9
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCc--EEEEEec--CChhhHHHHHHc--------CceecCCCcCCHHhhcCc
Q 014834 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI--VVKVGLR--KGSRSFAEARAA--------GFTEENGTLGDIYETISG 178 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r--~~s~s~~~A~~~--------G~~~~~~~~~s~~Ea~~~ 178 (417)
+||+||| .|.+|.+++..|... |+ ++.+.++ ...+....+.+. .+.. ..+..+++++
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~------~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v----~~~~~~a~~~ 70 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALR------DIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRV----RQGGYEDTAG 70 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT------TCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEE----EECCGGGGTT
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEE----EeCCHHHhCC
Confidence 5899999 999999999999877 65 5655555 222111111110 1111 1123678999
Q ss_pred CCEEEEccC
Q 014834 179 SDLVLLLIS 187 (417)
Q Consensus 179 ADIViLavp 187 (417)
||+||++..
T Consensus 71 aDvVi~~ag 79 (303)
T 1o6z_A 71 SDVVVITAG 79 (303)
T ss_dssp CSEEEECCC
T ss_pred CCEEEEcCC
Confidence 999999865
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=95.22 E-value=0.025 Score=54.03 Aligned_cols=74 Identities=20% Similarity=0.167 Sum_probs=50.6
Q ss_pred ccCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHc----CceecCCCcCC---HHhhcCcC
Q 014834 108 FNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEENGTLGD---IYETISGS 179 (417)
Q Consensus 108 l~gmkkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~----G~~~~~~~~~s---~~Ea~~~A 179 (417)
++| +++-|+| .|-+|.+++..|.+. |.+|++.+|+.++..+.+.+. ++......+.+ ..+++++.
T Consensus 117 l~g-k~vlVtGaaGGiG~aia~~L~~~------G~~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 189 (287)
T 1lu9_A 117 VKG-KKAVVLAGTGPVGMRSAALLAGE------GAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGA 189 (287)
T ss_dssp CTT-CEEEEETCSSHHHHHHHHHHHHT------TCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTC
T ss_pred CCC-CEEEEECCCcHHHHHHHHHHHHC------cCEEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHhC
Confidence 678 9999999 999999999999999 999888888755443333321 21110000222 35667778
Q ss_pred CEEEEccCC
Q 014834 180 DLVLLLISD 188 (417)
Q Consensus 180 DIViLavpd 188 (417)
|+||.+++.
T Consensus 190 DvlVn~ag~ 198 (287)
T 1lu9_A 190 HFVFTAGAI 198 (287)
T ss_dssp SEEEECCCT
T ss_pred CEEEECCCc
Confidence 888888863
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.03 Score=51.20 Aligned_cols=74 Identities=14% Similarity=0.191 Sum_probs=49.2
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCC-cEEEEEecCChhhHHHHHHcCceecCCCcCC---HHhhcCcCCEEEEc
Q 014834 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLL 185 (417)
Q Consensus 111 mkkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G-~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s---~~Ea~~~ADIViLa 185 (417)
||+|.|.| .|.+|.++++.|.+. | ++|++..|+.++..+. ...++......+.+ ++++++++|+||.+
T Consensus 23 mk~vlVtGatG~iG~~l~~~L~~~------G~~~V~~~~R~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~ 95 (236)
T 3qvo_A 23 MKNVLILGAGGQIARHVINQLADK------QTIKQTLFARQPAKIHKP-YPTNSQIIMGDVLNHAALKQAMQGQDIVYAN 95 (236)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTC------TTEEEEEEESSGGGSCSS-CCTTEEEEECCTTCHHHHHHHHTTCSEEEEE
T ss_pred ccEEEEEeCCcHHHHHHHHHHHhC------CCceEEEEEcChhhhccc-ccCCcEEEEecCCCHHHHHHHhcCCCEEEEc
Confidence 38899999 699999999999998 9 8888877764432111 11122211111233 45678899999988
Q ss_pred cCCchH
Q 014834 186 ISDAAQ 191 (417)
Q Consensus 186 vpd~~~ 191 (417)
......
T Consensus 96 a~~~~~ 101 (236)
T 3qvo_A 96 LTGEDL 101 (236)
T ss_dssp CCSTTH
T ss_pred CCCCch
Confidence 765443
|
| >2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.082 Score=53.22 Aligned_cols=70 Identities=16% Similarity=0.156 Sum_probs=52.4
Q ss_pred hccCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecC----ChhhHH----HHHHcC--ceecCCCcCCHHh
Q 014834 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFA----EARAAG--FTEENGTLGDIYE 174 (417)
Q Consensus 107 ~l~gmkkIgIIG~G--~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~----~s~s~~----~A~~~G--~~~~~~~~~s~~E 174 (417)
.|+| .||++||=| +++.+++..+..- |++|.+.... +....+ .|++.| +.. +.+++|
T Consensus 173 ~l~g-l~va~vGD~~~rva~Sl~~~~~~l------G~~v~~~~P~~l~p~~~~~~~~~~~a~~~G~~v~~----~~d~~e 241 (359)
T 2w37_A 173 KLQG-LTLTFMGDGRNNVANSLLVTGAIL------GVNIHIVAPKALFPTEETQNIAKGFAEKSGAKLVI----TDDLDE 241 (359)
T ss_dssp CCTT-CEEEEESCTTSHHHHHHHHHHHHH------TCEEEEECCGGGSCCHHHHHHHHHHHHHHTCCEEE----ESCHHH
T ss_pred CcCC-eEEEEECCCccchHHHHHHHHHHc------CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEE----EeCHHH
Confidence 4788 899999986 9999999999988 9998776543 112222 233566 443 578999
Q ss_pred hcCcCCEEEEccC
Q 014834 175 TISGSDLVLLLIS 187 (417)
Q Consensus 175 a~~~ADIViLavp 187 (417)
++++||+|...+=
T Consensus 242 av~~aDvvytd~w 254 (359)
T 2w37_A 242 GLKGSNVVYTDVW 254 (359)
T ss_dssp HHTTCSEEEECCS
T ss_pred HhcCCCEEEEccc
Confidence 9999999998553
|
| >1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A* | Back alignment and structure |
|---|
Probab=95.11 E-value=0.014 Score=58.47 Aligned_cols=22 Identities=32% Similarity=0.364 Sum_probs=20.2
Q ss_pred CEEEEEcccchHHHHHHHHHhh
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDS 133 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s 133 (417)
.+|||||+|.||..++..|.+.
T Consensus 5 i~vgIiG~G~VG~~~~~~l~~~ 26 (358)
T 1ebf_A 5 VNVAVIGAGVVGSAFLDQLLAM 26 (358)
T ss_dssp EEEEEECCSHHHHHHHHHHHHC
T ss_pred EEEEEEecCHHHHHHHHHHHhc
Confidence 5899999999999999999875
|
| >4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.14 Score=51.23 Aligned_cols=69 Identities=12% Similarity=0.159 Sum_probs=50.4
Q ss_pred hccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecC----ChhhHHH----HHHcC--ceecCCCcCCHHhh
Q 014834 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAE----ARAAG--FTEENGTLGDIYET 175 (417)
Q Consensus 107 ~l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~----~s~s~~~----A~~~G--~~~~~~~~~s~~Ea 175 (417)
.|+| .||+|||= +++..+++..+..- |.+|.+.... +..-.+. |++.| +.. +.+++|+
T Consensus 176 ~l~g-lkva~vGD~~nva~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~v~~----~~d~~ea 244 (340)
T 4ep1_A 176 TFKG-IKLAYVGDGNNVCHSLLLASAKV------GMHMTVATPVGYRPNEEIVKKALAIAKETGAEIEI----LHNPELA 244 (340)
T ss_dssp CCTT-CEEEEESCCCHHHHHHHHHHHHH------TCEEEEECCTTCCCCHHHHHHHHHHHHHHCCCEEE----ESCHHHH
T ss_pred CCCC-CEEEEECCCchhHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEE----ECCHHHH
Confidence 3788 99999996 47889999988887 9988776543 2222222 33566 333 5789999
Q ss_pred cCcCCEEEEcc
Q 014834 176 ISGSDLVLLLI 186 (417)
Q Consensus 176 ~~~ADIViLav 186 (417)
+++||+|+..+
T Consensus 245 v~~aDVvyt~~ 255 (340)
T 4ep1_A 245 VNEADFIYTDV 255 (340)
T ss_dssp HTTCSEEEECC
T ss_pred hCCCCEEEecC
Confidence 99999999865
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=95.03 E-value=0.051 Score=56.27 Aligned_cols=69 Identities=17% Similarity=0.165 Sum_probs=52.6
Q ss_pred CCEEEEEcccchHHH-HHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc--cC
Q 014834 111 INQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL--IS 187 (417)
Q Consensus 111 mkkIgIIG~G~mG~A-iA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa--vp 187 (417)
+|+|-|||.|-.|.+ +|+-|++. |++|.+.+...+...+..++.|+... .....+.+.++|+||+. +|
T Consensus 22 ~~~v~viGiG~sG~s~~A~~l~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~---~g~~~~~~~~~d~vV~Spgi~ 92 (494)
T 4hv4_A 22 VRHIHFVGIGGAGMGGIAEVLANE------GYQISGSDLAPNSVTQHLTALGAQIY---FHHRPENVLDASVVVVSTAIS 92 (494)
T ss_dssp CCEEEEETTTSTTHHHHHHHHHHT------TCEEEEECSSCCHHHHHHHHTTCEEE---SSCCGGGGTTCSEEEECTTSC
T ss_pred CCEEEEEEEcHhhHHHHHHHHHhC------CCeEEEEECCCCHHHHHHHHCCCEEE---CCCCHHHcCCCCEEEECCCCC
Confidence 489999999999996 89999999 99998887665555566667888753 22233456789999985 55
Q ss_pred C
Q 014834 188 D 188 (417)
Q Consensus 188 d 188 (417)
+
T Consensus 93 ~ 93 (494)
T 4hv4_A 93 A 93 (494)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=95.02 E-value=0.065 Score=52.57 Aligned_cols=70 Identities=11% Similarity=0.076 Sum_probs=43.9
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc-------EEEEEecC----ChhhHHHHH--HcC---ceecCCCcCCHHh
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRK----GSRSFAEAR--AAG---FTEENGTLGDIYE 174 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~-------~ViVg~r~----~s~s~~~A~--~~G---~~~~~~~~~s~~E 174 (417)
+||+|||. |.+|.+++..|... |+ +|.+.++. ..+....+. ..+ +...-....+..+
T Consensus 6 ~KI~ViGaaG~VG~~l~~~L~~~------~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~ 79 (329)
T 1b8p_A 6 MRVAVTGAAGQICYSLLFRIANG------DMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMT 79 (329)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTT------TTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHH
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHH
Confidence 69999998 99999999999887 64 56655443 111111111 111 1100001246788
Q ss_pred hcCcCCEEEEccC
Q 014834 175 TISGSDLVLLLIS 187 (417)
Q Consensus 175 a~~~ADIViLavp 187 (417)
++++||+||++..
T Consensus 80 al~~aD~Vi~~ag 92 (329)
T 1b8p_A 80 AFKDADVALLVGA 92 (329)
T ss_dssp HTTTCSEEEECCC
T ss_pred HhCCCCEEEEeCC
Confidence 9999999999753
|
| >3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus} | Back alignment and structure |
|---|
Probab=94.92 E-value=0.13 Score=50.92 Aligned_cols=69 Identities=14% Similarity=0.205 Sum_probs=50.2
Q ss_pred hccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecC----ChhhHHH----HHHcC--ceecCCCcCCHHhh
Q 014834 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAE----ARAAG--FTEENGTLGDIYET 175 (417)
Q Consensus 107 ~l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~----~s~s~~~----A~~~G--~~~~~~~~~s~~Ea 175 (417)
.|+| .||++||= +++..+++..+..- |++|.+.... +....+. +++.| +.. +.+++|+
T Consensus 154 ~l~g-lkva~vGD~~rva~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~----~~d~~ea 222 (323)
T 3gd5_A 154 RLAG-LKLAYVGDGNNVAHSLLLGCAKV------GMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQI----LRDPFEA 222 (323)
T ss_dssp CCTT-CEEEEESCCCHHHHHHHHHHHHH------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEE----ESCHHHH
T ss_pred CCCC-CEEEEECCCCcHHHHHHHHHHHc------CCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEE----ECCHHHH
Confidence 4788 99999995 58899999998887 9988776543 2222222 33445 333 5789999
Q ss_pred cCcCCEEEEcc
Q 014834 176 ISGSDLVLLLI 186 (417)
Q Consensus 176 ~~~ADIViLav 186 (417)
++++|+|+..+
T Consensus 223 v~~aDvvyt~~ 233 (323)
T 3gd5_A 223 ARGAHILYTDV 233 (323)
T ss_dssp HTTCSEEEECC
T ss_pred hcCCCEEEEec
Confidence 99999999875
|
| >4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A | Back alignment and structure |
|---|
Probab=94.90 E-value=0.17 Score=51.04 Aligned_cols=69 Identities=13% Similarity=0.017 Sum_probs=49.4
Q ss_pred ccCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecCC------hhhHH----HHHHcCceecCCCcCCHHhh
Q 014834 108 FNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG------SRSFA----EARAAGFTEENGTLGDIYET 175 (417)
Q Consensus 108 l~gmkkIgIIG~G--~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~------s~s~~----~A~~~G~~~~~~~~~s~~Ea 175 (417)
|+| .||++||=+ +++.+++..+..- |++|.+..... +...+ .+.+.|.... .+.+++|+
T Consensus 178 l~g-lkva~vGD~~nnva~Sl~~~~~~l------G~~v~~~~P~~~~p~~~~~~~~~~~~~~~~~g~~i~--~~~d~~ea 248 (365)
T 4amu_A 178 LKN-KKIVFIGDYKNNVGVSTMIGAAFN------GMHVVMCGPDNYKNEIDKNVLAKCIELFKRNGGSLR--FSTDKILA 248 (365)
T ss_dssp CTT-CEEEEESSTTSHHHHHHHHHHHHT------TCEEEEESCGGGGGGSCHHHHHHHHHHHHHHSCEEE--EESCHHHH
T ss_pred CCC-CEEEEECCCCcchHHHHHHHHHHc------CCEEEEECCccccCCCcHHHHHHHHHHHHHcCCEEE--EECCHHHH
Confidence 788 999999988 7888998888877 99887765431 11122 2345563210 15789999
Q ss_pred cCcCCEEEEc
Q 014834 176 ISGSDLVLLL 185 (417)
Q Consensus 176 ~~~ADIViLa 185 (417)
+++||+|..-
T Consensus 249 v~~aDVVytd 258 (365)
T 4amu_A 249 AQDADVIYTD 258 (365)
T ss_dssp TTTCSEEEEC
T ss_pred hcCCCEEEec
Confidence 9999999984
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.87 E-value=0.068 Score=50.12 Aligned_cols=82 Identities=23% Similarity=0.286 Sum_probs=54.1
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhh--HHHH------HHcCceecCCCcCC---HHhhcCc
Q 014834 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS--FAEA------RAAGFTEENGTLGD---IYETISG 178 (417)
Q Consensus 111 mkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s--~~~A------~~~G~~~~~~~~~s---~~Ea~~~ 178 (417)
|++|.|+|. |.+|.++++.|.+. |++|++..|..+.. .+.+ ...|+....+.+.+ +.+++++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~------g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~ 77 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDL------GHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKN 77 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHT------TCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHT
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhC------CCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcC
Confidence 488999996 99999999999999 99888777763221 1111 23455432222333 4567889
Q ss_pred CCEEEEccCCc---hHHHHHHHH
Q 014834 179 SDLVLLLISDA---AQADNYEKI 198 (417)
Q Consensus 179 ADIViLavpd~---~~~~Vl~eI 198 (417)
+|+||.+.... .+..+++..
T Consensus 78 ~d~vi~~a~~~~~~~~~~l~~aa 100 (308)
T 1qyc_A 78 VDVVISTVGSLQIESQVNIIKAI 100 (308)
T ss_dssp CSEEEECCCGGGSGGGHHHHHHH
T ss_pred CCEEEECCcchhhhhHHHHHHHH
Confidence 99999998753 234455543
|
| >4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A* | Back alignment and structure |
|---|
Probab=94.83 E-value=0.057 Score=53.19 Aligned_cols=76 Identities=14% Similarity=0.191 Sum_probs=58.5
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| |++.|||-+ ..|.++|.-|.+. +..|.+.... +.++.+.+++||+||.
T Consensus 175 i~l~G-k~vvViGRS~iVGkPla~LL~~~------~ATVTi~Hs~-------------------T~dl~~~~~~ADIvV~ 228 (303)
T 4b4u_A 175 IEIAG-KHAVVVGRSAILGKPMAMMLLQA------NATVTICHSR-------------------TQNLPELVKQADIIVG 228 (303)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTT-------------------CSSHHHHHHTCSEEEE
T ss_pred CCCCC-CEEEEEeccccccchHHHHHHhc------CCEEEEecCC-------------------CCCHHHHhhcCCeEEe
Confidence 46889 999999977 6799999999988 8888766432 2367788999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
++.-... +. ..++|+|++|++++
T Consensus 229 A~G~p~~---i~--~d~vk~GavVIDVG 251 (303)
T 4b4u_A 229 AVGKAEL---IQ--KDWIKQGAVVVDAG 251 (303)
T ss_dssp CSCSTTC---BC--GGGSCTTCEEEECC
T ss_pred ccCCCCc---cc--cccccCCCEEEEec
Confidence 9874322 21 34689999999864
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=94.82 E-value=0.033 Score=55.76 Aligned_cols=90 Identities=17% Similarity=0.152 Sum_probs=55.5
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCC-----c-EEEEEecCCh--hhHHHH----HH-cCceecCCCcCCHHhhc
Q 014834 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSD-----I-VVKVGLRKGS--RSFAEA----RA-AGFTEENGTLGDIYETI 176 (417)
Q Consensus 111 mkkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G-----~-~ViVg~r~~s--~s~~~A----~~-~G~~~~~~~~~s~~Ea~ 176 (417)
|+||+||| .|.+|..+.+.|.+. + . +++...+..+ +..... .. ...... -.+. +.+
T Consensus 9 m~kVaIvGATG~vG~~llr~L~~~------~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~---~~~~-~~~ 78 (352)
T 2nqt_A 9 ATKVAVAGASGYAGGEILRLLLGH------PAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVE---PTEA-AVL 78 (352)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTC------HHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCE---ECCH-HHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHcC------CCCCCccEEEEEEECCCcCCCchhhhcccccccceeeec---cCCH-HHh
Confidence 37999999 999999999999876 5 3 5544433211 211100 00 011110 1233 345
Q ss_pred CcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 177 ~~ADIViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
.++|+||+|+|.....++.+.+ +.|..+++.++.
T Consensus 79 ~~~DvVf~alg~~~s~~~~~~~----~~G~~vIDlSa~ 112 (352)
T 2nqt_A 79 GGHDAVFLALPHGHSAVLAQQL----SPETLIIDCGAD 112 (352)
T ss_dssp TTCSEEEECCTTSCCHHHHHHS----CTTSEEEECSST
T ss_pred cCCCEEEECCCCcchHHHHHHH----hCCCEEEEECCC
Confidence 6899999999988777766544 467778876653
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.11 Score=48.65 Aligned_cols=82 Identities=18% Similarity=0.184 Sum_probs=54.1
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC-------hhhHH--HHHHcCceecCCCcCC---HHhhcC
Q 014834 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-------SRSFA--EARAAGFTEENGTLGD---IYETIS 177 (417)
Q Consensus 111 mkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~-------s~s~~--~A~~~G~~~~~~~~~s---~~Ea~~ 177 (417)
|++|.|+|. |.+|.++++.|.+. |++|++..|+. ++... .....|+....+.+.+ +.++++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~ 75 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKA------GNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIK 75 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHH------TCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHT
T ss_pred CcEEEEECCCchHHHHHHHHHHhC------CCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHh
Confidence 388999996 99999999999999 99988877764 21111 1123455432122333 456788
Q ss_pred cCCEEEEccCCc---hHHHHHHHH
Q 014834 178 GSDLVLLLISDA---AQADNYEKI 198 (417)
Q Consensus 178 ~ADIViLavpd~---~~~~Vl~eI 198 (417)
++|+||.+.... .+..+++..
T Consensus 76 ~~d~vi~~a~~~~~~~~~~l~~aa 99 (307)
T 2gas_A 76 QVDIVICAAGRLLIEDQVKIIKAI 99 (307)
T ss_dssp TCSEEEECSSSSCGGGHHHHHHHH
T ss_pred CCCEEEECCcccccccHHHHHHHH
Confidence 999999998753 233455443
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=94.69 E-value=0.11 Score=46.52 Aligned_cols=69 Identities=16% Similarity=0.196 Sum_probs=48.2
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCC----HHhhcCcCCEEEEcc
Q 014834 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD----IYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s----~~Ea~~~ADIViLav 186 (417)
|||.|+| .|.+|.++++.|.+. |++|++..|..++..+. .++....+.+.+ +.+++++.|+||.+.
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~---~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~a 71 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTT------DYQIYAGARKVEQVPQY---NNVKAVHFDVDWTPEEMAKQLHGMDAIINVS 71 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTS------SCEEEEEESSGGGSCCC---TTEEEEECCTTSCHHHHHTTTTTCSEEEECC
T ss_pred CeEEEECCCCHHHHHHHHHHHHC------CCEEEEEECCccchhhc---CCceEEEecccCCHHHHHHHHcCCCEEEECC
Confidence 4899999 799999999999999 99998888864432111 233221122333 456788999999987
Q ss_pred CCc
Q 014834 187 SDA 189 (417)
Q Consensus 187 pd~ 189 (417)
...
T Consensus 72 g~~ 74 (219)
T 3dqp_A 72 GSG 74 (219)
T ss_dssp CCT
T ss_pred cCC
Confidence 643
|
| >3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.13 Score=50.74 Aligned_cols=71 Identities=14% Similarity=0.080 Sum_probs=50.4
Q ss_pred hcc-CCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecC----ChhhHHHH----HHcCceecCCCcCCHHhhc
Q 014834 107 AFN-GINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEA----RAAGFTEENGTLGDIYETI 176 (417)
Q Consensus 107 ~l~-gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~----~s~s~~~A----~~~G~~~~~~~~~s~~Ea~ 176 (417)
.++ | .||++||= +++..+++..+... |.+|.+.... +....+.+ ++.|.... .+.+++|++
T Consensus 142 ~l~~g-l~va~vGD~~~va~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~--~~~d~~eav 212 (307)
T 3tpf_A 142 MQNGI-AKVAFIGDSNNMCNSWLITAAIL------GFEISIAMPKNYKISPEIWEFAMKQALISGAKIS--LGYDKFEAL 212 (307)
T ss_dssp CGGGC-CEEEEESCSSHHHHHHHHHHHHH------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEE--EESCHHHHH
T ss_pred CCCCC-CEEEEEcCCCccHHHHHHHHHHc------CCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 467 8 99999996 48899999988887 9988776543 12222323 35553310 157899999
Q ss_pred CcCCEEEEcc
Q 014834 177 SGSDLVLLLI 186 (417)
Q Consensus 177 ~~ADIViLav 186 (417)
+++|+|...+
T Consensus 213 ~~aDvvyt~~ 222 (307)
T 3tpf_A 213 KDKDVVITDT 222 (307)
T ss_dssp TTCSEEEECC
T ss_pred cCCCEEEecC
Confidence 9999999876
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=94.64 E-value=0.13 Score=44.94 Aligned_cols=70 Identities=23% Similarity=0.306 Sum_probs=47.6
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCC---HHhhcCcCCEEEEccC
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s---~~Ea~~~ADIViLavp 187 (417)
|+|.|+|. |.+|.++++.|.+. |++|++..|+.++.... ...++......+.+ +.++++++|+||.+..
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~------g~~V~~~~r~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~ 76 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQA------GYEVTVLVRDSSRLPSE-GPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLG 76 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCGGGSCSS-SCCCSEEEESCTTSHHHHHHHHTTCSEEEECCC
T ss_pred CEEEEEcCCcHHHHHHHHHHHHC------CCeEEEEEeChhhcccc-cCCceEEEEecCCCHHHHHHHHcCCCEEEECcc
Confidence 78999998 99999999999999 99998887764332110 01233211111233 4567889999999876
Q ss_pred C
Q 014834 188 D 188 (417)
Q Consensus 188 d 188 (417)
.
T Consensus 77 ~ 77 (206)
T 1hdo_A 77 T 77 (206)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=94.60 E-value=0.2 Score=44.60 Aligned_cols=70 Identities=20% Similarity=0.119 Sum_probs=47.1
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCC-HHhhcCcCCEEEEccCC
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD-IYETISGSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s-~~Ea~~~ADIViLavpd 188 (417)
|||.|+|. |.+|.++++.|.+. |++|++..|+.++ .......++....+.+.+ ..+++.++|+||.+...
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~-~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~ 72 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRR------GHEVLAVVRDPQK-AADRLGATVATLVKEPLVLTEADLDSVDAVVDALSV 72 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHH-HHHHTCTTSEEEECCGGGCCHHHHTTCSEEEECCCC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHC------CCEEEEEEecccc-cccccCCCceEEecccccccHhhcccCCEEEECCcc
Confidence 47999997 99999999999999 9999888776433 222222344321111111 11678899999998754
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=94.57 E-value=0.1 Score=49.39 Aligned_cols=81 Identities=21% Similarity=0.174 Sum_probs=54.3
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHH---HHHHcCceecCCCcCC---HHhhcCcCCEEEE
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA---EARAAGFTEENGTLGD---IYETISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~---~A~~~G~~~~~~~~~s---~~Ea~~~ADIViL 184 (417)
++|.|+|. |.+|.++++.|.+. |++|++..|+.+...+ .....|+....+.+.+ +.++++++|+||.
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~------g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~ 85 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKL------GHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVIS 85 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHT------TCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred CeEEEECCCchHHHHHHHHHHHC------CCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEE
Confidence 58999995 99999999999999 9998887776432221 1123565432222333 4567889999999
Q ss_pred ccCCc---hHHHHHHHH
Q 014834 185 LISDA---AQADNYEKI 198 (417)
Q Consensus 185 avpd~---~~~~Vl~eI 198 (417)
+.... .+..+++..
T Consensus 86 ~a~~~~~~~~~~l~~aa 102 (318)
T 2r6j_A 86 ALAFPQILDQFKILEAI 102 (318)
T ss_dssp CCCGGGSTTHHHHHHHH
T ss_pred CCchhhhHHHHHHHHHH
Confidence 98753 234455443
|
| >1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A | Back alignment and structure |
|---|
Probab=94.56 E-value=0.098 Score=51.84 Aligned_cols=69 Identities=16% Similarity=0.185 Sum_probs=48.5
Q ss_pred hccCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCC----hhhHHH----HHHcC--ceecCCCcCCHHhh
Q 014834 107 AFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAG--FTEENGTLGDIYET 175 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~-mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~----s~s~~~----A~~~G--~~~~~~~~~s~~Ea 175 (417)
.|+| .||++||=|+ +..+++..+..- |.+|.+..... ..-.+. +++.| +.. +.+++|+
T Consensus 152 ~l~g-l~va~vGD~~~va~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~----~~d~~ea 220 (321)
T 1oth_A 152 SLKG-LTLSWIGDGNNILHSIMMSAAKF------GMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLL----TNDPLEA 220 (321)
T ss_dssp CCTT-CEEEEESCSSHHHHHHHTTTGGG------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEE----ESCHHHH
T ss_pred CcCC-cEEEEECCchhhHHHHHHHHHHc------CCeEEEECCccccCCHHHHHHHHHHHHHcCCeEEE----EECHHHH
Confidence 4788 8999999864 777777777666 99887765432 111222 22455 343 5789999
Q ss_pred cCcCCEEEEcc
Q 014834 176 ISGSDLVLLLI 186 (417)
Q Consensus 176 ~~~ADIViLav 186 (417)
++++|+|+.-+
T Consensus 221 v~~aDvvy~d~ 231 (321)
T 1oth_A 221 AHGGNVLITDT 231 (321)
T ss_dssp HTTCSEEEECC
T ss_pred hccCCEEEEec
Confidence 99999999955
|
| >2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.52 E-value=0.2 Score=49.26 Aligned_cols=70 Identities=14% Similarity=0.040 Sum_probs=50.9
Q ss_pred hccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCh-hhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 107 ~l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s-~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
.|+| .||++||= +++..+++..+... |.+|.+.....- ...+.....++.. +.+++|+++++|+|..
T Consensus 151 ~l~g-l~ia~vGD~~rva~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~----~~d~~eav~~aDvvy~ 219 (301)
T 2ef0_A 151 GLAG-LEVAWVGDGNNVLNSLLEVAPLA------GLKVRVATPKGYEPDPGLLKRANAFF----THDPKEAALGAHALYT 219 (301)
T ss_dssp CCTT-CEEEEESCCCHHHHHHHHHHHHH------TCEEEEECCTTCCCCHHHHHHHTCEE----ESCHHHHHTTCSEEEE
T ss_pred CcCC-cEEEEECCCchhHHHHHHHHHHc------CCEEEEECCchhcCCHHHHhhceeEE----ECCHHHHhcCCCEEEe
Confidence 4788 89999997 79999999999988 999877754321 1111111223554 6789999999999998
Q ss_pred ccC
Q 014834 185 LIS 187 (417)
Q Consensus 185 avp 187 (417)
.+=
T Consensus 220 ~~~ 222 (301)
T 2ef0_A 220 DVW 222 (301)
T ss_dssp CCC
T ss_pred cCc
Confidence 554
|
| >2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A | Back alignment and structure |
|---|
Probab=94.49 E-value=0.096 Score=51.60 Aligned_cols=69 Identities=22% Similarity=0.249 Sum_probs=51.9
Q ss_pred hccCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecCC----hhhHH----HHHHcC--ceecCCCcCCHHh
Q 014834 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAG--FTEENGTLGDIYE 174 (417)
Q Consensus 107 ~l~gmkkIgIIG~G--~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~----s~s~~----~A~~~G--~~~~~~~~~s~~E 174 (417)
.|+| .||++||=| ++..+++..+... |++|.+..... ..-.+ .+++.| +.. +.+++|
T Consensus 145 ~l~g-l~va~vGD~~~rva~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~----~~d~~e 213 (307)
T 2i6u_A 145 ALRG-LRLSYFGDGANNMAHSLLLGGVTA------GIHVTVAAPEGFLPDPSVRAAAERRAQDTGASVTV----TADAHA 213 (307)
T ss_dssp CCTT-CEEEEESCTTSHHHHHHHHHHHHT------TCEEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEE----ESCHHH
T ss_pred CcCC-eEEEEECCCCcCcHHHHHHHHHHC------CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEE----EECHHH
Confidence 4778 899999986 9999999999988 99988775432 11222 233667 443 578999
Q ss_pred hcCcCCEEEEcc
Q 014834 175 TISGSDLVLLLI 186 (417)
Q Consensus 175 a~~~ADIViLav 186 (417)
+++++|+|+..+
T Consensus 214 av~~aDvvy~~~ 225 (307)
T 2i6u_A 214 AAAGADVLVTDT 225 (307)
T ss_dssp HHTTCSEEEECC
T ss_pred HhcCCCEEEecc
Confidence 999999999854
|
| >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O | Back alignment and structure |
|---|
Probab=94.48 E-value=0.13 Score=51.18 Aligned_cols=94 Identities=14% Similarity=0.135 Sum_probs=54.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC--ChhhHHHHH----HcCc-----ee--cC------C-C---
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK--GSRSFAEAR----AAGF-----TE--EN------G-T--- 168 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~--~s~s~~~A~----~~G~-----~~--~~------~-~--- 168 (417)
.||||+|+|.+|.-+++.|.+. .+++|+..++. +........ ..|- .. .+ + .
T Consensus 4 ikVgI~G~GrIGr~l~R~l~~~-----p~vevvaI~d~~~~~~~~~~ll~yds~~g~~~~~~v~~~~~~~l~~~g~~i~v 78 (337)
T 3e5r_O 4 IKIGINGFGRIGRLVARVALQS-----EDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTV 78 (337)
T ss_dssp EEEEEECCSHHHHHHHHHHHTC-----SSEEEEEEECSSSCHHHHHHHHHCCTTTCCCCSSCEEESSSSEEEETTEEEEE
T ss_pred eEEEEECcCHHHHHHHHHHhCC-----CCeEEEEEECCCCCHHHHHHhhcccccCCCCCCCcEEeecCCeeEECCeEEEE
Confidence 4999999999999999998764 14566544442 222111211 1121 00 00 0 0
Q ss_pred c--CCHHhhc---CcCCEEEEccCCchHHHHHHHHHhcCCCCc--EEEEecC
Q 014834 169 L--GDIYETI---SGSDLVLLLISDAAQADNYEKIFSCMKPNS--ILGLSHG 213 (417)
Q Consensus 169 ~--~s~~Ea~---~~ADIViLavpd~~~~~Vl~eI~~~lk~ga--iLi~a~G 213 (417)
. .+++++- .++|+||.|+|.....+..... ++.|. +|+.+++
T Consensus 79 ~~~~dp~~l~w~~~~vDvV~eaTg~~~~~e~a~~~---l~aGak~VVIs~pa 127 (337)
T 3e5r_O 79 FGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAH---LKGGAKKVVISAPS 127 (337)
T ss_dssp ECCSCGGGCCHHHHTCSEEEECSSSCCSHHHHTHH---HHTTCSEEEESSCC
T ss_pred EecCChHHccccccCCCEEEECCCchhhHHHHHHH---HHcCCCEEEEecCC
Confidence 1 1444431 4799999999998887766554 34465 6654443
|
| >3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* | Back alignment and structure |
|---|
Probab=94.41 E-value=0.074 Score=52.49 Aligned_cols=93 Identities=13% Similarity=0.071 Sum_probs=53.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC--cEEE-EEecCChhhHH------HHH---HcCceecCCCcC---CHHhhc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD--IVVK-VGLRKGSRSFA------EAR---AAGFTEENGTLG---DIYETI 176 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G--~~Vi-Vg~r~~s~s~~------~A~---~~G~~~~~~~~~---s~~Ea~ 176 (417)
.+|||||+|.||..++..|.+.-.....| ++|+ |.+++..+..+ .+. ..++.. ... +.++++
T Consensus 7 irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~d~~~ll 83 (331)
T 3c8m_A 7 INLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLDS---LEYESISASEAL 83 (331)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGGG---CCSEECCHHHHH
T ss_pred EeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCccc---ccCCCCCHHHHh
Confidence 47999999999999999997751101113 4443 44444322111 111 123210 023 777776
Q ss_pred -CcCCEEEEccCCc----hHHHHHHHHHhcCCCCcEEEE
Q 014834 177 -SGSDLVLLLISDA----AQADNYEKIFSCMKPNSILGL 210 (417)
Q Consensus 177 -~~ADIViLavpd~----~~~~Vl~eI~~~lk~gaiLi~ 210 (417)
.+.|+|+.|+|+. .+.+++.+ .|+.|+-|+.
T Consensus 84 ~~~iDvVv~~t~~~~~~~~~~~~~~~---AL~aGkhVvt 119 (331)
T 3c8m_A 84 ARDFDIVVDATPASADGKKELAFYKE---TFENGKDVVT 119 (331)
T ss_dssp HSSCSEEEECSCCCSSSHHHHHHHHH---HHHTTCEEEE
T ss_pred CCCCCEEEECCCCCCccchHHHHHHH---HHHCCCeEEe
Confidence 4689999999986 44445443 3456775553
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=94.38 E-value=0.25 Score=49.94 Aligned_cols=69 Identities=22% Similarity=0.162 Sum_probs=41.6
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCc-----EEEEEecCChhh----HHHHH--HcCceec--C-CCcCCHHhhc
Q 014834 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI-----VVKVGLRKGSRS----FAEAR--AAGFTEE--N-GTLGDIYETI 176 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~-----~ViVg~r~~s~s----~~~A~--~~G~~~~--~-~~~~s~~Ea~ 176 (417)
.||+||| .|.+|.+++..|... ++ .+.+.+...... .-.+. .++..+. + ....+..+++
T Consensus 33 ~KV~ViGAaG~VG~~la~~l~~~------~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~~~~y~~~ 106 (375)
T 7mdh_A 33 VNIAVSGAAGMISNHLLFKLASG------EVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVF 106 (375)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT------TTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHT
T ss_pred CEEEEECCCChHHHHHHHHHHcC------CcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEecCCHHHh
Confidence 6999999 799999999999887 54 254443221221 11222 1222100 0 0023567889
Q ss_pred CcCCEEEEcc
Q 014834 177 SGSDLVLLLI 186 (417)
Q Consensus 177 ~~ADIViLav 186 (417)
++||+||++-
T Consensus 107 ~daDvVVita 116 (375)
T 7mdh_A 107 EDVDWALLIG 116 (375)
T ss_dssp TTCSEEEECC
T ss_pred CCCCEEEEcC
Confidence 9999999963
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=94.37 E-value=0.087 Score=51.31 Aligned_cols=89 Identities=19% Similarity=0.236 Sum_probs=63.3
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCC
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd 188 (417)
.| .+|.|+|.|.+|...++-++.. |.+|++..++. ...+.+++.|.... ..+.+++.+..|+||-++..
T Consensus 176 ~g-~~VlV~GaG~vG~~a~qla~~~------Ga~Vi~~~~~~-~~~~~~~~lGa~~v---~~~~~~~~~~~D~vid~~g~ 244 (348)
T 3two_A 176 KG-TKVGVAGFGGLGSMAVKYAVAM------GAEVSVFARNE-HKKQDALSMGVKHF---YTDPKQCKEELDFIISTIPT 244 (348)
T ss_dssp TT-CEEEEESCSHHHHHHHHHHHHT------TCEEEEECSSS-TTHHHHHHTTCSEE---ESSGGGCCSCEEEEEECCCS
T ss_pred CC-CEEEEECCcHHHHHHHHHHHHC------CCeEEEEeCCH-HHHHHHHhcCCCee---cCCHHHHhcCCCEEEECCCc
Confidence 56 8999999999999999999988 99887666554 45678888887531 23334444478999999886
Q ss_pred chHHHHHHHHHhcCCCCcEEEEe
Q 014834 189 AAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 189 ~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
.. .++.....++++-.++..
T Consensus 245 ~~---~~~~~~~~l~~~G~iv~~ 264 (348)
T 3two_A 245 HY---DLKDYLKLLTYNGDLALV 264 (348)
T ss_dssp CC---CHHHHHTTEEEEEEEEEC
T ss_pred HH---HHHHHHHHHhcCCEEEEE
Confidence 52 233444566776665544
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=94.37 E-value=0.22 Score=47.01 Aligned_cols=75 Identities=20% Similarity=0.171 Sum_probs=49.3
Q ss_pred hhccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH------cCceec-CCCc---CCHHh
Q 014834 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA------AGFTEE-NGTL---GDIYE 174 (417)
Q Consensus 106 ~~l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~------~G~~~~-~~~~---~s~~E 174 (417)
..++| ++|.|.|. |-+|.++++.|.+. |++|++..|..++....... .++... ...+ .+.++
T Consensus 7 ~~~~~-~~vlVTGatG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~ 79 (342)
T 1y1p_A 7 VLPEG-SLVLVTGANGFVASHVVEQLLEH------GYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDE 79 (342)
T ss_dssp SSCTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTT
T ss_pred cCCCC-CEEEEECCccHHHHHHHHHHHHC------CCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHH
Confidence 44667 89999997 99999999999999 99998777764332211111 122210 0111 23456
Q ss_pred hcCcCCEEEEccC
Q 014834 175 TISGSDLVLLLIS 187 (417)
Q Consensus 175 a~~~ADIViLavp 187 (417)
++++.|+||.+..
T Consensus 80 ~~~~~d~vih~A~ 92 (342)
T 1y1p_A 80 VIKGAAGVAHIAS 92 (342)
T ss_dssp TTTTCSEEEECCC
T ss_pred HHcCCCEEEEeCC
Confidence 6778999998764
|
| >2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.36 E-value=0.058 Score=53.53 Aligned_cols=88 Identities=14% Similarity=0.109 Sum_probs=52.1
Q ss_pred CEEEEEcccchHHHHHHHHHhh---hhhhcCCcEEE-EEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDS---LAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s---~~~~~~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavp 187 (417)
.||||||+|.+|..+++.|.+. +.+.|.+++++ |.+++..+ + .++.. .....|.++++ +.|+|+.|+|
T Consensus 4 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~----~--~~~~~-~~~~~d~~~ll-~iDvVve~t~ 75 (332)
T 2ejw_A 4 LKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRK----P--RAIPQ-ELLRAEPFDLL-EADLVVEAMG 75 (332)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTS----C--CSSCG-GGEESSCCCCT-TCSEEEECCC
T ss_pred eEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHH----h--hccCc-ccccCCHHHHh-CCCEEEECCC
Confidence 4799999999999999998775 11111134443 33443221 1 12211 11145777888 8999999999
Q ss_pred CchH-HHHHHHHHhcCCCCcEEEE
Q 014834 188 DAAQ-ADNYEKIFSCMKPNSILGL 210 (417)
Q Consensus 188 d~~~-~~Vl~eI~~~lk~gaiLi~ 210 (417)
...+ .+...+ .|+.|+-|+.
T Consensus 76 ~~~~a~~~~~~---AL~aGKhVVt 96 (332)
T 2ejw_A 76 GVEAPLRLVLP---ALEAGIPLIT 96 (332)
T ss_dssp CSHHHHHHHHH---HHHTTCCEEE
T ss_pred CcHHHHHHHHH---HHHcCCeEEE
Confidence 7754 344433 3445665543
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=94.28 E-value=0.1 Score=50.84 Aligned_cols=93 Identities=18% Similarity=0.180 Sum_probs=61.3
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcCcee-cCCCcCCHHhhc------CcCC
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTE-ENGTLGDIYETI------SGSD 180 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G~~~-~~~~~~s~~Ea~------~~AD 180 (417)
.| ++|.|+|.|.+|...++-++.. |. +|++..++ +...+.+++.|... .+....+..+.+ ...|
T Consensus 167 ~g-~~VlV~GaG~vG~~~~q~a~~~------Ga~~Vi~~~~~-~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D 238 (348)
T 2d8a_A 167 SG-KSVLITGAGPLGLLGIAVAKAS------GAYPVIVSEPS-DFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVD 238 (348)
T ss_dssp TT-CCEEEECCSHHHHHHHHHHHHT------TCCSEEEECSC-HHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEECCC-HHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCC
Confidence 67 8999999999999999999988 98 78766655 44567777888532 011112333322 2589
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 181 IViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
+||-++... +.++...+.++++-.++..+
T Consensus 239 ~vid~~g~~---~~~~~~~~~l~~~G~iv~~g 267 (348)
T 2d8a_A 239 VFLEFSGAP---KALEQGLQAVTPAGRVSLLG 267 (348)
T ss_dssp EEEECSCCH---HHHHHHHHHEEEEEEEEECC
T ss_pred EEEECCCCH---HHHHHHHHHHhcCCEEEEEc
Confidence 999998852 23444455566665555443
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=94.27 E-value=0.13 Score=50.42 Aligned_cols=71 Identities=23% Similarity=0.171 Sum_probs=42.6
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH--cC-c--eecCCCc-CCHHhhcCcCCEEEE
Q 014834 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--AG-F--TEENGTL-GDIYETISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~--~G-~--~~~~~~~-~s~~Ea~~~ADIViL 184 (417)
+||+||| .|.+|.+++..|.... +...++.+.+... +..-.+.+ .. . .. .+.. .+..+++++||+||+
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~---~~~~el~L~Di~~-~~~G~a~Dl~~~~~~~~v-~~~~~~~~~~~~~~aDivii 75 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQL---PSGSELSLYDIAP-VTPGVAVDLSHIPTAVKI-KGFSGEDATPALEGADVVLI 75 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHS---CTTEEEEEECSST-THHHHHHHHHTSCSSEEE-EEECSSCCHHHHTTCSEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC---CCCceEEEEecCC-CchhHHHHhhCCCCCceE-EEecCCCcHHHhCCCCEEEE
Confidence 5899999 8999999999987530 0123666555543 22222221 11 1 11 0000 245678999999999
Q ss_pred ccC
Q 014834 185 LIS 187 (417)
Q Consensus 185 avp 187 (417)
+..
T Consensus 76 ~ag 78 (312)
T 3hhp_A 76 SAG 78 (312)
T ss_dssp CCS
T ss_pred eCC
Confidence 863
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=94.21 E-value=0.094 Score=51.51 Aligned_cols=93 Identities=17% Similarity=0.210 Sum_probs=62.1
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCh--hhHHHHHHcCceecCCCcCCHHhhc----CcCC
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETI----SGSD 180 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s--~s~~~A~~~G~~~~~~~~~s~~Ea~----~~AD 180 (417)
.++| ++|.|+|.|.+|...++.++.. |.+|++..++.. ...+.+++.|....| .. +..+.+ ...|
T Consensus 178 ~~~g-~~VlV~GaG~vG~~~~q~a~~~------Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v~-~~-~~~~~~~~~~~~~d 248 (366)
T 2cdc_A 178 TLNC-RKVLVVGTGPIGVLFTLLFRTY------GLEVWMANRREPTEVEQTVIEETKTNYYN-SS-NGYDKLKDSVGKFD 248 (366)
T ss_dssp SSTT-CEEEEESCHHHHHHHHHHHHHH------TCEEEEEESSCCCHHHHHHHHHHTCEEEE-CT-TCSHHHHHHHCCEE
T ss_pred cCCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEeCCccchHHHHHHHHhCCceec-hH-HHHHHHHHhCCCCC
Confidence 4558 9999999999999999999988 998887776640 335677778875311 11 111222 3589
Q ss_pred EEEEccCCchHHHHH-HHHHhcCCCCcEEEEe
Q 014834 181 LVLLLISDAAQADNY-EKIFSCMKPNSILGLS 211 (417)
Q Consensus 181 IViLavpd~~~~~Vl-~eI~~~lk~gaiLi~a 211 (417)
+||-++.... .+ +...+.|+++-.++..
T Consensus 249 ~vid~~g~~~---~~~~~~~~~l~~~G~iv~~ 277 (366)
T 2cdc_A 249 VIIDATGADV---NILGNVIPLLGRNGVLGLF 277 (366)
T ss_dssp EEEECCCCCT---HHHHHHGGGEEEEEEEEEC
T ss_pred EEEECCCChH---HHHHHHHHHHhcCCEEEEE
Confidence 9999988542 23 4555666666555433
|
| >4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=94.20 E-value=0.068 Score=52.72 Aligned_cols=68 Identities=18% Similarity=0.206 Sum_probs=48.2
Q ss_pred hccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCh---hhHHHHHHcC--ceecCCCcCCHHhhcCcCC
Q 014834 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS---RSFAEARAAG--FTEENGTLGDIYETISGSD 180 (417)
Q Consensus 107 ~l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s---~s~~~A~~~G--~~~~~~~~~s~~Ea~~~AD 180 (417)
.|+| .||++||= +++..+++..+... |.+|.+.....- ... .+++.| +.. +.+++|+++++|
T Consensus 151 ~l~g-lkva~vGD~~~va~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~-~~~~~g~~v~~----~~d~~eav~~aD 218 (309)
T 4f2g_A 151 PIRG-KTVAWVGDANNMLYTWIQAARIL------DFKLQLSTPPGYALDAKL-VDAESAPFYQV----FDDPNEACKGAD 218 (309)
T ss_dssp CCTT-CEEEEESCCCHHHHHHHHHHHHH------TCEEEEECCGGGCCCGGG-SCGGGGGGEEE----CSSHHHHTTTCS
T ss_pred CCCC-CEEEEECCCcchHHHHHHHHHHc------CCEEEEECCcccCCCHHH-HHHHcCCeEEE----EcCHHHHhcCCC
Confidence 4788 89999995 58899999998888 998877644211 111 122333 333 578999999999
Q ss_pred EEEEcc
Q 014834 181 LVLLLI 186 (417)
Q Consensus 181 IViLav 186 (417)
+|+..+
T Consensus 219 vvyt~~ 224 (309)
T 4f2g_A 219 LVTTDV 224 (309)
T ss_dssp EEEECC
T ss_pred EEEecc
Confidence 999864
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=94.18 E-value=0.066 Score=53.64 Aligned_cols=90 Identities=12% Similarity=0.095 Sum_probs=56.3
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecC--ChhhHHHHH---HcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK--GSRSFAEAR---AAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 111 mkkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~--~s~s~~~A~---~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
|.|||||| .|..|.-+.+-|.+. ...++...... ..+.....- ....... ..+.++...++|+||+
T Consensus 13 ~~~V~IvGAtG~vG~ellrlL~~h-----P~~el~~l~S~~~aG~~~~~~~p~~~~~l~~~---~~~~~~~~~~~Dvvf~ 84 (351)
T 1vkn_A 13 MIRAGIIGATGYTGLELVRLLKNH-----PEAKITYLSSRTYAGKKLEEIFPSTLENSILS---EFDPEKVSKNCDVLFT 84 (351)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHC-----TTEEEEEEECSTTTTSBHHHHCGGGCCCCBCB---CCCHHHHHHHCSEEEE
T ss_pred eeEEEEECCCCHHHHHHHHHHHcC-----CCcEEEEEeCcccccCChHHhChhhccCceEE---eCCHHHhhcCCCEEEE
Confidence 57999998 699999999988875 12354432221 122222110 0122210 1245555578999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~G 213 (417)
|+|.....++.+++ .|..|++.++
T Consensus 85 alp~~~s~~~~~~~-----~g~~VIDlSs 108 (351)
T 1vkn_A 85 ALPAGASYDLVREL-----KGVKIIDLGA 108 (351)
T ss_dssp CCSTTHHHHHHTTC-----CSCEEEESSS
T ss_pred CCCcHHHHHHHHHh-----CCCEEEECCh
Confidence 99988877666544 6888888877
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=94.14 E-value=0.16 Score=48.05 Aligned_cols=82 Identities=17% Similarity=0.144 Sum_probs=54.4
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC-h----hhHHH---HHHcCceecCCCcCC---HHhhcCc
Q 014834 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-S----RSFAE---ARAAGFTEENGTLGD---IYETISG 178 (417)
Q Consensus 111 mkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~-s----~s~~~---A~~~G~~~~~~~~~s---~~Ea~~~ 178 (417)
|++|.|+|. |.+|.++++.|.+. |++|++..|+. + ...+. ....|+....+.+.+ +.+++++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~ 77 (321)
T 3c1o_A 4 MEKIIIYGGTGYIGKFMVRASLSF------SHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQ 77 (321)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHT------TCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTT
T ss_pred ccEEEEEcCCchhHHHHHHHHHhC------CCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcC
Confidence 478999995 99999999999998 99988877764 1 11111 123455332222333 5568889
Q ss_pred CCEEEEccCCc---hHHHHHHHH
Q 014834 179 SDLVLLLISDA---AQADNYEKI 198 (417)
Q Consensus 179 ADIViLavpd~---~~~~Vl~eI 198 (417)
+|+||.+.... ....+++..
T Consensus 78 ~d~vi~~a~~~~~~~~~~l~~aa 100 (321)
T 3c1o_A 78 VDIVISALPFPMISSQIHIINAI 100 (321)
T ss_dssp CSEEEECCCGGGSGGGHHHHHHH
T ss_pred CCEEEECCCccchhhHHHHHHHH
Confidence 99999988743 334555543
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=94.14 E-value=0.22 Score=49.64 Aligned_cols=80 Identities=13% Similarity=0.111 Sum_probs=43.3
Q ss_pred hhhccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCC--cEEEEEecCChhh--HHHHH---HcCceecC--CCcCCHHh
Q 014834 105 PDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSD--IVVKVGLRKGSRS--FAEAR---AAGFTEEN--GTLGDIYE 174 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G--~~ViVg~r~~s~s--~~~A~---~~G~~~~~--~~~~s~~E 174 (417)
+..... -||+|||. |.+|.+++..|... .=.+.+ .++.+.+...... .-.+. ...+.... ....+..+
T Consensus 19 ~~s~~~-vKVaViGAaG~IG~~la~~la~~-~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~~~~~ 96 (345)
T 4h7p_A 19 PGSMSA-VKVAVTGAAGQIGYALVPLIARG-ALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTADPRV 96 (345)
T ss_dssp ---CCC-EEEEEESTTSHHHHHHHHHHHHT-TTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEESCHHH
T ss_pred CCCCCC-CEEEEECcCcHHHHHHHHHHHhc-cccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEcCChHH
Confidence 344555 69999996 99999999988875 000001 1455554432111 11111 11111000 01346788
Q ss_pred hcCcCCEEEEcc
Q 014834 175 TISGSDLVLLLI 186 (417)
Q Consensus 175 a~~~ADIViLav 186 (417)
++++||+||++-
T Consensus 97 a~~~advVvi~a 108 (345)
T 4h7p_A 97 AFDGVAIAIMCG 108 (345)
T ss_dssp HTTTCSEEEECC
T ss_pred HhCCCCEEEECC
Confidence 999999999974
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=94.10 E-value=0.084 Score=55.03 Aligned_cols=89 Identities=17% Similarity=0.161 Sum_probs=57.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCC-H-HhhcCcCCEEEEccCCc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD-I-YETISGSDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s-~-~Ea~~~ADIViLavpd~ 189 (417)
++|.|||+|..|..+|+.|.+. |++|++.+.+..+. +.+. -+...|.+-.+ + +.-+++||.++.++++.
T Consensus 349 ~~viIiG~G~~G~~la~~L~~~------g~~v~vid~d~~~~-~~~~--~~i~gD~t~~~~L~~agi~~ad~vi~~~~~d 419 (565)
T 4gx0_A 349 ELIFIIGHGRIGCAAAAFLDRK------PVPFILIDRQESPV-CNDH--VVVYGDATVGQTLRQAGIDRASGIIVTTNDD 419 (565)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCCEEEEESSCCSS-CCSS--CEEESCSSSSTHHHHHTTTSCSEEEECCSCH
T ss_pred CCEEEECCCHHHHHHHHHHHHC------CCCEEEEECChHHH-hhcC--CEEEeCCCCHHHHHhcCccccCEEEEECCCc
Confidence 6899999999999999999998 99988777654432 2111 22221222111 2 23478999999999987
Q ss_pred hHHHHHHHHHhcCCCC-cEEE
Q 014834 190 AQADNYEKIFSCMKPN-SILG 209 (417)
Q Consensus 190 ~~~~Vl~eI~~~lk~g-aiLi 209 (417)
...-+.-.+...+.+. .+|.
T Consensus 420 ~~ni~~~~~ak~l~~~~~iia 440 (565)
T 4gx0_A 420 STNIFLTLACRHLHSHIRIVA 440 (565)
T ss_dssp HHHHHHHHHHHHHCSSSEEEE
T ss_pred hHHHHHHHHHHHHCCCCEEEE
Confidence 5433333444455555 4554
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.94 E-value=0.37 Score=47.97 Aligned_cols=96 Identities=18% Similarity=0.182 Sum_probs=61.5
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcCceec-CCCcCCHHhhc------CcCC
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G~~~~-~~~~~s~~Ea~------~~AD 180 (417)
.| .+|.|+|.|.+|...++-++.. |. .|++..+. +...+.+++.|.... +..-.+..+.+ +..|
T Consensus 213 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi~~~~~-~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D 284 (404)
T 3ip1_A 213 PG-DNVVILGGGPIGLAAVAILKHA------GASKVILSEPS-EVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAK 284 (404)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSC-HHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCS
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEECCC-HHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCC
Confidence 46 8999999999999999999988 98 66654444 556788888886421 11112222222 2589
Q ss_pred EEEEccCCc--hHHHHHHHHHhcCCCCcEEEEec
Q 014834 181 LVLLLISDA--AQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 181 IViLavpd~--~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
+||-++... .....++-+...++++-.++..+
T Consensus 285 ~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G 318 (404)
T 3ip1_A 285 LFLEATGVPQLVWPQIEEVIWRARGINATVAIVA 318 (404)
T ss_dssp EEEECSSCHHHHHHHHHHHHHHCSCCCCEEEECS
T ss_pred EEEECCCCcHHHHHHHHHHHHhccCCCcEEEEeC
Confidence 999999876 22233333323347776665443
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=93.89 E-value=0.31 Score=47.79 Aligned_cols=92 Identities=18% Similarity=0.172 Sum_probs=60.4
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcCceec-CCCc--CCHHhhcC-----cC
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETIS-----GS 179 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G~~~~-~~~~--~s~~Ea~~-----~A 179 (417)
.| .+|.|+|.|.+|...++-++.. |. +|++..++ +...+.+++.|.... +... .+..+.+. ..
T Consensus 191 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi~~~~~-~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~ 262 (373)
T 1p0f_A 191 PG-STCAVFGLGGVGFSAIVGCKAA------GASRIIGVGTH-KDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGV 262 (373)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECSC-GGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEECCC-HHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCC
Confidence 46 8999999999999999999888 88 67655544 455778888886420 1000 12333222 58
Q ss_pred CEEEEccCCchHHHHHHHHHhcCCCC-cEEEEe
Q 014834 180 DLVLLLISDAAQADNYEKIFSCMKPN-SILGLS 211 (417)
Q Consensus 180 DIViLavpd~~~~~Vl~eI~~~lk~g-aiLi~a 211 (417)
|+||-++... +.++.....++++ -.++..
T Consensus 263 Dvvid~~g~~---~~~~~~~~~l~~~~G~iv~~ 292 (373)
T 1p0f_A 263 DYAVECAGRI---ETMMNALQSTYCGSGVTVVL 292 (373)
T ss_dssp SEEEECSCCH---HHHHHHHHTBCTTTCEEEEC
T ss_pred CEEEECCCCH---HHHHHHHHHHhcCCCEEEEE
Confidence 9999998752 3345555677776 555433
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=93.89 E-value=0.13 Score=49.48 Aligned_cols=82 Identities=16% Similarity=0.148 Sum_probs=55.0
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHH------HHHHcCceecCCCcCC---HHhhcC--cC
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA------EARAAGFTEENGTLGD---IYETIS--GS 179 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~------~A~~~G~~~~~~~~~s---~~Ea~~--~A 179 (417)
++|.|+|. |.+|.++++.|.+. |++|++..|..+.... .....|+....+.+.+ +.++++ ++
T Consensus 11 ~~IlVtGatG~iG~~l~~~L~~~------g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 84 (346)
T 3i6i_A 11 GRVLIAGATGFIGQFVATASLDA------HRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEI 84 (346)
T ss_dssp CCEEEECTTSHHHHHHHHHHHHT------TCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTC
T ss_pred CeEEEECCCcHHHHHHHHHHHHC------CCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCC
Confidence 78999998 99999999999998 9999888886421111 1123455432233334 446777 99
Q ss_pred CEEEEccCCchH---HHHHHHHH
Q 014834 180 DLVLLLISDAAQ---ADNYEKIF 199 (417)
Q Consensus 180 DIViLavpd~~~---~~Vl~eI~ 199 (417)
|+||.+...... ..+++...
T Consensus 85 d~Vi~~a~~~n~~~~~~l~~aa~ 107 (346)
T 3i6i_A 85 DIVVSTVGGESILDQIALVKAMK 107 (346)
T ss_dssp CEEEECCCGGGGGGHHHHHHHHH
T ss_pred CEEEECCchhhHHHHHHHHHHHH
Confidence 999999876432 34554433
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=93.85 E-value=0.067 Score=47.93 Aligned_cols=71 Identities=18% Similarity=0.258 Sum_probs=48.8
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCC---HHhhcCcCCEEEEcc
Q 014834 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLLI 186 (417)
Q Consensus 111 mkkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s---~~Ea~~~ADIViLav 186 (417)
||+|.|+| .|.+|.++++.|.+. |++|++..|..++.... ..++......+.+ ..++++++|+||.+.
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a 75 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNR------GFEVTAVVRHPEKIKIE--NEHLKVKKADVSSLDEVCEVCKGADAVISAF 75 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTT------TCEEEEECSCGGGCCCC--CTTEEEECCCTTCHHHHHHHHTTCSEEEECC
T ss_pred CCEEEEEcCCchHHHHHHHHHHHC------CCEEEEEEcCcccchhc--cCceEEEEecCCCHHHHHHHhcCCCEEEEeC
Confidence 58999999 599999999999999 99998887764432111 1232221112233 456788999999997
Q ss_pred CCc
Q 014834 187 SDA 189 (417)
Q Consensus 187 pd~ 189 (417)
.+.
T Consensus 76 ~~~ 78 (227)
T 3dhn_A 76 NPG 78 (227)
T ss_dssp CC-
T ss_pred cCC
Confidence 654
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=93.84 E-value=0.17 Score=49.46 Aligned_cols=44 Identities=16% Similarity=0.089 Sum_probs=31.2
Q ss_pred ccccccchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEec
Q 014834 98 RDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (417)
Q Consensus 98 ~~~f~~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r 148 (417)
+|.+..+++.|+. .+|.|||+|-.|..++++|... |+ ++.+.++
T Consensus 24 ~~G~~~~q~kL~~-~~VlVvGaGGlGs~va~~La~a------GVG~i~lvD~ 68 (292)
T 3h8v_A 24 RMGIVSDYEKIRT-FAVAIVGVGGVGSVTAEMLTRC------GIGKLLLFDY 68 (292)
T ss_dssp --------CGGGG-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECC
T ss_pred ccChHHHHHHHhC-CeEEEECcCHHHHHHHHHHHHc------CCCEEEEECC
Confidence 4555334577888 9999999999999999999998 77 5665554
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.77 E-value=0.17 Score=47.44 Aligned_cols=73 Identities=14% Similarity=0.145 Sum_probs=49.9
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChh----hHHH---HHHcCceecCCCcCC---HHhhcCcC
Q 014834 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFAE---ARAAGFTEENGTLGD---IYETISGS 179 (417)
Q Consensus 111 mkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~----s~~~---A~~~G~~~~~~~~~s---~~Ea~~~A 179 (417)
+++|.|+|. |.+|.++++.|.+. |++|++..|+.+. ..+. ....|+....+.+.+ +.++++++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~ 77 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISL------GHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQV 77 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHT------TCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhC------CCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCC
Confidence 378999995 99999999999998 9998877776321 1111 123455432222333 45678899
Q ss_pred CEEEEccCCc
Q 014834 180 DLVLLLISDA 189 (417)
Q Consensus 180 DIViLavpd~ 189 (417)
|+||.+....
T Consensus 78 d~vi~~a~~~ 87 (313)
T 1qyd_A 78 DVVISALAGG 87 (313)
T ss_dssp SEEEECCCCS
T ss_pred CEEEECCccc
Confidence 9999987643
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=93.77 E-value=0.22 Score=51.15 Aligned_cols=94 Identities=12% Similarity=0.183 Sum_probs=65.2
Q ss_pred hccCCCEEEEEccc----------chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcC--ceecCCCcCCHHh
Q 014834 107 AFNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG--FTEENGTLGDIYE 174 (417)
Q Consensus 107 ~l~gmkkIgIIG~G----------~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G--~~~~~~~~~s~~E 174 (417)
.++| +||+|+|+- +-...++..|.+. |.+|.+++..-.. +.....| +.. +.+.+|
T Consensus 315 ~~~~-~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~------g~~v~~~DP~~~~--~~~~~~~~~~~~----~~~~~~ 381 (450)
T 3gg2_A 315 NVQG-RCVAIWGLSFKPGTDDMREAPSLVLIEKLLEV------GCRVRVYDPVAMK--EAQKRLGDKVEY----TTDMYD 381 (450)
T ss_dssp CCTT-CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHT------TCEEEEECSSCHH--HHHHHHGGGSEE----CSSHHH
T ss_pred cCCC-CEEEEEeeeeCCCCcccccChHHHHHHHHHHC------CCEEEEECCCCcH--HHHHhcCcccee----cCCHHH
Confidence 4688 999999984 3467888888888 9999877654322 1112233 443 467889
Q ss_pred hcCcCCEEEEccCCchHHH-HHHHHHhcCCCCcEEEEecCc
Q 014834 175 TISGSDLVLLLISDAAQAD-NYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 175 a~~~ADIViLavpd~~~~~-Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
+++++|.|+++|.-....+ -++.+...|+ +.+|++.-++
T Consensus 382 ~~~~ad~~vi~t~~~~f~~~~~~~~~~~~~-~~~i~D~r~~ 421 (450)
T 3gg2_A 382 AVRGAEALFHVTEWKEFRMPDWSALSQAMA-ASLVIDGRNV 421 (450)
T ss_dssp HTTTCSCEEECSCCGGGSSCCHHHHHHHSS-SCEEEESSCC
T ss_pred HhcCCCEEEEccCCHHHhhcCHHHHHHhcC-CCEEEECCCC
Confidence 9999999999999776643 2455666665 4577776554
|
| >2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.75 E-value=0.15 Score=52.61 Aligned_cols=68 Identities=15% Similarity=0.127 Sum_probs=49.7
Q ss_pred cCCCEEEEEcccchHHH-HHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 109 NGINQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~A-iA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
..+|+|.|||+|-.|.+ +|+-|++. |++|.+.+...+...+..++.|+....+ .+. +.++.+|+||+.
T Consensus 17 ~~~~~v~viGiG~sG~s~~A~~l~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~~g--~~~-~~~~~a~~vv~s 85 (491)
T 2f00_A 17 RRVRHIHFVGIGGAGMGGIAEVLANE------GYQISGSDLAPNPVTQQLMNLGATIYFN--HRP-ENVRDASVVVVS 85 (491)
T ss_dssp TTCCEEEEETTTSTTHHHHHHHHHHT------TCEEEEECSSCCHHHHHHHHTTCEEESS--CCG-GGGTTCSEEEEC
T ss_pred ccCCEEEEEEcCHHHHHHHHHHHHhC------CCeEEEECCCCCHHHHHHHHCCCEEECC--CCH-HHcCCCCEEEEC
Confidence 34589999999999997 99999998 9999877765544444555678775322 123 346789999885
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=93.74 E-value=0.1 Score=51.93 Aligned_cols=95 Identities=18% Similarity=0.229 Sum_probs=62.2
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcCceecCCCcCCH-Hhhc----C--cCC
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDI-YETI----S--GSD 180 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~-~Ea~----~--~AD 180 (417)
.| .+|.|+|.|.+|...++-++.. |. +|++..++ ....+.+++.|....+-...+. .+.+ . ..|
T Consensus 185 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi~~~~~-~~~~~~a~~lGa~~i~~~~~~~~~~~~~~~~~g~g~D 256 (398)
T 2dph_A 185 PG-SHVYIAGAGPVGRCAAAGARLL------GAACVIVGDQN-PERLKLLSDAGFETIDLRNSAPLRDQIDQILGKPEVD 256 (398)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEEESC-HHHHHHHHTTTCEEEETTSSSCHHHHHHHHHSSSCEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEEcCC-HHHHHHHHHcCCcEEcCCCcchHHHHHHHHhCCCCCC
Confidence 56 8999999999999999999888 88 77766554 4456788888874211111121 2222 1 589
Q ss_pred EEEEccCCch-----------HHHHHHHHHhcCCCCcEEEEe
Q 014834 181 LVLLLISDAA-----------QADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 181 IViLavpd~~-----------~~~Vl~eI~~~lk~gaiLi~a 211 (417)
+||-++.... ....+++....++++-.++..
T Consensus 257 vvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~ 298 (398)
T 2dph_A 257 CGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIP 298 (398)
T ss_dssp EEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECC
T ss_pred EEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEe
Confidence 9999987542 123455555667776655533
|
| >1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1 | Back alignment and structure |
|---|
Probab=93.73 E-value=0.11 Score=51.23 Aligned_cols=72 Identities=17% Similarity=0.148 Sum_probs=53.7
Q ss_pred hccCCCEEEEEccc---chHHHHHHHHHhhhhhhcCCcEEEEEecC----ChhhHHHHHHcCceecCCCcCCHHhhcCcC
Q 014834 107 AFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEARAAGFTEENGTLGDIYETISGS 179 (417)
Q Consensus 107 ~l~gmkkIgIIG~G---~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~----~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~A 179 (417)
.|+| .||++||=| ++..+++..+... |++|.+.... +....+.+++.|.... .+.+++|++++|
T Consensus 152 ~l~g-l~va~vGD~~~~rva~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~--~~~d~~eav~~a 222 (308)
T 1ml4_A 152 RIDG-LKIGLLGDLKYGRTVHSLAEALTFY------DVELYLISPELLRMPRHIVEELREKGMKVV--ETTTLEDVIGKL 222 (308)
T ss_dssp CSSS-EEEEEESCTTTCHHHHHHHHHGGGS------CEEEEEECCGGGCCCHHHHHHHHHTTCCEE--EESCTHHHHTTC
T ss_pred CCCC-eEEEEeCCCCcCchHHHHHHHHHHC------CCEEEEECCccccCCHHHHHHHHHcCCeEE--EEcCHHHHhcCC
Confidence 4678 899999985 8999999999888 9988776543 2223456666675320 146899999999
Q ss_pred CEEEEccC
Q 014834 180 DLVLLLIS 187 (417)
Q Consensus 180 DIViLavp 187 (417)
|+|....=
T Consensus 223 Dvvyt~~~ 230 (308)
T 1ml4_A 223 DVLYVTRI 230 (308)
T ss_dssp SEEEECCC
T ss_pred CEEEECCc
Confidence 99998753
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.69 E-value=0.37 Score=46.44 Aligned_cols=95 Identities=17% Similarity=0.115 Sum_probs=61.2
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec-CCCcCCHHhhc------CcCC
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~-~~~~~s~~Ea~------~~AD 180 (417)
..| ++|.|+|.|.+|...++-++.. |..+++..+..+...+.+++.|.... +..-.+..+.+ ...|
T Consensus 159 ~~g-~~VlV~GaG~vG~~aiq~ak~~------G~~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~~~g~d 231 (346)
T 4a2c_A 159 CEN-KNVIIIGAGTIGLLAIQCAVAL------GAKSVTAIDISSEKLALAKSFGAMQTFNSSEMSAPQMQSVLRELRFNQ 231 (346)
T ss_dssp CTT-SEEEEECCSHHHHHHHHHHHHT------TCSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHGGGCSSE
T ss_pred CCC-CEEEEECCCCcchHHHHHHHHc------CCcEEEEEechHHHHHHHHHcCCeEEEeCCCCCHHHHHHhhcccCCcc
Confidence 457 8999999999999999999988 88665555544566788999996421 11112222222 3468
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 181 IViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
+|+-++... +.++.....++++-.+++.+
T Consensus 232 ~v~d~~G~~---~~~~~~~~~l~~~G~~v~~g 260 (346)
T 4a2c_A 232 LILETAGVP---QTVELAVEIAGPHAQLALVG 260 (346)
T ss_dssp EEEECSCSH---HHHHHHHHHCCTTCEEEECC
T ss_pred ccccccccc---chhhhhhheecCCeEEEEEe
Confidence 888887643 23444445667776665443
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=93.68 E-value=0.26 Score=46.09 Aligned_cols=70 Identities=23% Similarity=0.321 Sum_probs=49.3
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCC-cEEEEEecCChhhH-HHHHHcCceecCCCcCC---HHhhcCcCCEEEEc
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSF-AEARAAGFTEENGTLGD---IYETISGSDLVLLL 185 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G-~~ViVg~r~~s~s~-~~A~~~G~~~~~~~~~s---~~Ea~~~ADIViLa 185 (417)
|+|.|+|. |.+|.++++.|.+. | ++|++..|+.++.. +.....|+....+.+.+ +.++++++|+||.+
T Consensus 6 ~~ilVtGatG~iG~~l~~~L~~~------g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~ 79 (299)
T 2wm3_A 6 KLVVVFGGTGAQGGSVARTLLED------GTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIV 79 (299)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH------CSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred CEEEEECCCchHHHHHHHHHHhc------CCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEe
Confidence 78999997 99999999999998 8 89888777644321 22223455432222333 45678899999998
Q ss_pred cC
Q 014834 186 IS 187 (417)
Q Consensus 186 vp 187 (417)
..
T Consensus 80 a~ 81 (299)
T 2wm3_A 80 TN 81 (299)
T ss_dssp CC
T ss_pred CC
Confidence 75
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=93.61 E-value=0.2 Score=49.44 Aligned_cols=93 Identities=22% Similarity=0.260 Sum_probs=61.4
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcCceec-CCCcCCHHhhcC--------c
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS--------G 178 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G~~~~-~~~~~s~~Ea~~--------~ 178 (417)
.| .+|.|+|.|.+|...++-++.. |. .|++..+ .+...+.+++.|.... +....+..+.+. .
T Consensus 182 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi~~~~-~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg 253 (370)
T 4ej6_A 182 AG-STVAILGGGVIGLLTVQLARLA------GATTVILSTR-QATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGG 253 (370)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECS-CHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTC
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEECC-CHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCC
Confidence 56 8999999999999999999988 98 6655444 4556778888887421 111123334333 4
Q ss_pred CCEEEEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 179 ADIViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
.|+||-++... +.++.....++++-.++..+
T Consensus 254 ~Dvvid~~G~~---~~~~~~~~~l~~~G~vv~~G 284 (370)
T 4ej6_A 254 VDVVIECAGVA---ETVKQSTRLAKAGGTVVILG 284 (370)
T ss_dssp EEEEEECSCCH---HHHHHHHHHEEEEEEEEECS
T ss_pred CCEEEECCCCH---HHHHHHHHHhccCCEEEEEe
Confidence 79999998743 23444445566666655443
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=93.53 E-value=0.4 Score=47.07 Aligned_cols=91 Identities=19% Similarity=0.212 Sum_probs=60.0
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcCceec-CCCc--CCHHhhcC-----cC
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETIS-----GS 179 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G~~~~-~~~~--~s~~Ea~~-----~A 179 (417)
.| .+|.|+|.|.+|...++-++.. |. +|++..++ +...+.+++.|.... +... .+..+.+. ..
T Consensus 195 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi~~~~~-~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~ 266 (376)
T 1e3i_A 195 PG-STCAVFGLGCVGLSAIIGCKIA------GASRIIAIDIN-GEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGV 266 (376)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSC-GGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCB
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEcCC-HHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCc
Confidence 46 8999999999999999999888 88 67655544 455678888886420 1000 12333222 58
Q ss_pred CEEEEccCCchHHHHHHHHHhcCCCC-cEEEE
Q 014834 180 DLVLLLISDAAQADNYEKIFSCMKPN-SILGL 210 (417)
Q Consensus 180 DIViLavpd~~~~~Vl~eI~~~lk~g-aiLi~ 210 (417)
|+||-++... +.++.....++++ -.++.
T Consensus 267 Dvvid~~G~~---~~~~~~~~~l~~~~G~iv~ 295 (376)
T 1e3i_A 267 DYSLDCAGTA---QTLKAAVDCTVLGWGSCTV 295 (376)
T ss_dssp SEEEESSCCH---HHHHHHHHTBCTTTCEEEE
T ss_pred cEEEECCCCH---HHHHHHHHHhhcCCCEEEE
Confidence 9999998752 3345555677776 55543
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=93.50 E-value=0.22 Score=48.10 Aligned_cols=92 Identities=17% Similarity=0.192 Sum_probs=61.7
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec-CCCcCCHHhhcC----cCCEEE
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS----GSDLVL 183 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~-~~~~~s~~Ea~~----~ADIVi 183 (417)
.| ++|.|+|.|.+|...++-++.. |.+|++..++ +...+.+++.|.... +....+..+.+. ..|+||
T Consensus 166 ~g-~~VlV~GaG~vG~~a~qla~~~------Ga~Vi~~~~~-~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vi 237 (340)
T 3s2e_A 166 PG-QWVVISGIGGLGHVAVQYARAM------GLRVAAVDID-DAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVL 237 (340)
T ss_dssp TT-SEEEEECCSTTHHHHHHHHHHT------TCEEEEEESC-HHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEeCC-HHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEE
Confidence 56 8999999999999999999988 9988766555 455678888886420 111123333332 579999
Q ss_pred EccCCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 184 Lavpd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
.++... +.++.....++++-.++..
T Consensus 238 d~~g~~---~~~~~~~~~l~~~G~iv~~ 262 (340)
T 3s2e_A 238 VTAVSP---KAFSQAIGMVRRGGTIALN 262 (340)
T ss_dssp ESSCCH---HHHHHHHHHEEEEEEEEEC
T ss_pred EeCCCH---HHHHHHHHHhccCCEEEEe
Confidence 987643 3444555566666665543
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=93.39 E-value=0.21 Score=44.22 Aligned_cols=93 Identities=12% Similarity=0.064 Sum_probs=59.6
Q ss_pred cCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec-CCCcCCHHhh----c--CcCC
Q 014834 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYET----I--SGSD 180 (417)
Q Consensus 109 ~gmkkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~-~~~~~s~~Ea----~--~~AD 180 (417)
+| ++|.|+| .|.+|.++++.++.. |.+|++..++. ...+.+++.|.... |-...+..+. . ...|
T Consensus 38 ~g-~~vlV~Ga~ggiG~~~~~~~~~~------G~~V~~~~~~~-~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D 109 (198)
T 1pqw_A 38 PG-ERVLIHSATGGVGMAAVSIAKMI------GARIYTTAGSD-AKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVD 109 (198)
T ss_dssp TT-CEEEETTTTSHHHHHHHHHHHHH------TCEEEEEESSH-HHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEE
T ss_pred CC-CEEEEeeCCChHHHHHHHHHHHc------CCEEEEEeCCH-HHHHHHHHcCCCEEeeCCcHHHHHHHHHHhCCCCCe
Confidence 46 8999999 699999999999988 98887766653 33455666664210 1111122221 2 2479
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 014834 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 181 IViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~G 213 (417)
+||.++.. +.++...+.|+++-.++..+.
T Consensus 110 ~vi~~~g~----~~~~~~~~~l~~~G~~v~~g~ 138 (198)
T 1pqw_A 110 VVLNSLAG----EAIQRGVQILAPGGRFIELGK 138 (198)
T ss_dssp EEEECCCT----HHHHHHHHTEEEEEEEEECSC
T ss_pred EEEECCch----HHHHHHHHHhccCCEEEEEcC
Confidence 99988864 345555667777766665443
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=93.38 E-value=0.41 Score=46.97 Aligned_cols=92 Identities=22% Similarity=0.280 Sum_probs=59.8
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcCceec-CCCc--CCHHhhcC-----cC
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETIS-----GS 179 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G~~~~-~~~~--~s~~Ea~~-----~A 179 (417)
.| ++|.|+|.|.+|...++-++.. |. +|++..++ +...+.+++.|.... +... .+..+.+. ..
T Consensus 191 ~g-~~VlV~GaG~vG~~a~qla~~~------Ga~~Vi~~~~~-~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~ 262 (374)
T 2jhf_A 191 QG-STCAVFGLGGVGLSVIMGCKAA------GAARIIGVDIN-KDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGV 262 (374)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSC-GGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEcCC-HHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCC
Confidence 46 8999999999999999999988 88 67655554 445678888886420 1000 12333222 48
Q ss_pred CEEEEccCCchHHHHHHHHHhcCCCC-cEEEEe
Q 014834 180 DLVLLLISDAAQADNYEKIFSCMKPN-SILGLS 211 (417)
Q Consensus 180 DIViLavpd~~~~~Vl~eI~~~lk~g-aiLi~a 211 (417)
|+||-++... +.++.....++++ -.++..
T Consensus 263 D~vid~~g~~---~~~~~~~~~l~~~~G~iv~~ 292 (374)
T 2jhf_A 263 DFSFEVIGRL---DTMVTALSCCQEAYGVSVIV 292 (374)
T ss_dssp SEEEECSCCH---HHHHHHHHHBCTTTCEEEEC
T ss_pred cEEEECCCCH---HHHHHHHHHhhcCCcEEEEe
Confidence 9999998753 2344445567776 555433
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=93.36 E-value=0.37 Score=47.19 Aligned_cols=91 Identities=12% Similarity=0.039 Sum_probs=57.1
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHc----Cc---eecCCCcCCHHhh-cCcC
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GF---TEENGTLGDIYET-ISGS 179 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~----G~---~~~~~~~~s~~Ea-~~~A 179 (417)
-.| ++|..||||..|.+...--+.. |.+|+ +.+.++...+.|++. |. ... ..+..+. -...
T Consensus 121 ~~g-~rVLDIGcG~G~~ta~~lA~~~------ga~V~-gIDis~~~l~~Ar~~~~~~gl~~v~~v---~gDa~~l~d~~F 189 (298)
T 3fpf_A 121 RRG-ERAVFIGGGPLPLTGILLSHVY------GMRVN-VVEIEPDIAELSRKVIEGLGVDGVNVI---TGDETVIDGLEF 189 (298)
T ss_dssp CTT-CEEEEECCCSSCHHHHHHHHTT------CCEEE-EEESSHHHHHHHHHHHHHHTCCSEEEE---ESCGGGGGGCCC
T ss_pred CCc-CEEEEECCCccHHHHHHHHHcc------CCEEE-EEECCHHHHHHHHHHHHhcCCCCeEEE---ECchhhCCCCCc
Confidence 356 8999999998765433222223 66765 555555555665543 43 111 1233332 2467
Q ss_pred CEEEEccCCchHHHHHHHHHhcCCCCcEEE
Q 014834 180 DLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 180 DIViLavpd~~~~~Vl~eI~~~lk~gaiLi 209 (417)
|+|++..-.....++++++...||||-.|+
T Consensus 190 DvV~~~a~~~d~~~~l~el~r~LkPGG~Lv 219 (298)
T 3fpf_A 190 DVLMVAALAEPKRRVFRNIHRYVDTETRII 219 (298)
T ss_dssp SEEEECTTCSCHHHHHHHHHHHCCTTCEEE
T ss_pred CEEEECCCccCHHHHHHHHHHHcCCCcEEE
Confidence 999987654455689999999999998765
|
| >3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A | Back alignment and structure |
|---|
Probab=93.35 E-value=0.13 Score=50.57 Aligned_cols=65 Identities=20% Similarity=0.189 Sum_probs=47.7
Q ss_pred hccCCCEEEEEccc---chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEE
Q 014834 107 AFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 107 ~l~gmkkIgIIG~G---~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIVi 183 (417)
.|+| .||++||=| ++..+++..+... |++|.+.....-.. + ..+.|. ..+++|++++||+|+
T Consensus 144 ~l~g-lkva~vGD~~~~rva~Sl~~~~~~~------G~~v~~~~P~~~~~-~-~~~~g~------~~d~~eav~~aDvvy 208 (304)
T 3r7f_A 144 TFKG-LTVSIHGDIKHSRVARSNAEVLTRL------GARVLFSGPSEWQD-E-ENTFGT------YVSMDEAVESSDVVM 208 (304)
T ss_dssp CCTT-CEEEEESCCTTCHHHHHHHHHHHHT------TCEEEEESCGGGSC-T-TCSSCE------ECCHHHHHHHCSEEE
T ss_pred CCCC-CEEEEEcCCCCcchHHHHHHHHHHc------CCEEEEECCCccCc-c-hhhcCc------cCCHHHHhCCCCEEE
Confidence 4788 999999975 6999999999988 99887765432111 1 012332 468999999999999
Q ss_pred Ecc
Q 014834 184 LLI 186 (417)
Q Consensus 184 Lav 186 (417)
...
T Consensus 209 t~~ 211 (304)
T 3r7f_A 209 LLR 211 (304)
T ss_dssp ECC
T ss_pred ecc
Confidence 864
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=93.35 E-value=0.1 Score=54.43 Aligned_cols=48 Identities=27% Similarity=0.344 Sum_probs=35.2
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcC
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG 161 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G 161 (417)
.++| +++.|+|.|-+|.+++..|.+. |.+|++.+|+.++..+.+.+.+
T Consensus 361 ~l~~-k~vlV~GaGGig~aia~~L~~~------G~~V~i~~R~~~~a~~la~~~~ 408 (523)
T 2o7s_A 361 PLAS-KTVVVIGAGGAGKALAYGAKEK------GAKVVIANRTYERALELAEAIG 408 (523)
T ss_dssp ------CEEEECCSHHHHHHHHHHHHH------CC-CEEEESSHHHHHHHHHHTT
T ss_pred ccCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHcC
Confidence 3567 8999999999999999999999 9888888887665555665554
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.33 E-value=0.46 Score=46.61 Aligned_cols=91 Identities=19% Similarity=0.214 Sum_probs=60.0
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcCceec-CCCc--CCHHhhcC-----cC
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETIS-----GS 179 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G~~~~-~~~~--~s~~Ea~~-----~A 179 (417)
.| ++|.|+|.|.+|...++-++.. |. +|++..++ +...+.+++.|.... +..- .+..+.+. ..
T Consensus 192 ~g-~~VlV~GaG~vG~~a~qla~~~------Ga~~Vi~~~~~-~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~ 263 (374)
T 1cdo_A 192 PG-STCAVFGLGAVGLAAVMGCHSA------GAKRIIAVDLN-PDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGV 263 (374)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSC-GGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCB
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEEcCC-HHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCC
Confidence 46 8999999999999999999988 88 67655544 455778888886420 1000 12333332 47
Q ss_pred CEEEEccCCchHHHHHHHHHhcCCCC-cEEEE
Q 014834 180 DLVLLLISDAAQADNYEKIFSCMKPN-SILGL 210 (417)
Q Consensus 180 DIViLavpd~~~~~Vl~eI~~~lk~g-aiLi~ 210 (417)
|+||-++... +.++.....++++ -.++.
T Consensus 264 D~vid~~g~~---~~~~~~~~~l~~~~G~iv~ 292 (374)
T 1cdo_A 264 DFSLECVGNV---GVMRNALESCLKGWGVSVL 292 (374)
T ss_dssp SEEEECSCCH---HHHHHHHHTBCTTTCEEEE
T ss_pred CEEEECCCCH---HHHHHHHHHhhcCCcEEEE
Confidence 9999998752 2345556677776 55443
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=93.32 E-value=0.24 Score=49.54 Aligned_cols=89 Identities=12% Similarity=0.067 Sum_probs=55.2
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEE-ecC-ChhhHHHH-------------HHcCceecCCCcCCHHhh
Q 014834 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVG-LRK-GSRSFAEA-------------RAAGFTEENGTLGDIYET 175 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg-~r~-~s~s~~~A-------------~~~G~~~~~~~~~s~~Ea 175 (417)
.|||||| .|..|.-+.+-|.+. ..+++... .++ ..+..... .+.-+. ..+. +.
T Consensus 8 ~kVaIvGATGyvG~eLlrlL~~h-----P~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~-----~~~~-~~ 76 (359)
T 4dpk_A 8 LKAAILGATGLVGIEYVRMLSNH-----PYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIK-----PTDP-KL 76 (359)
T ss_dssp EEEEETTTTSTTHHHHHHHHTTC-----SSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCE-----ECCG-GG
T ss_pred CeEEEECCCCHHHHHHHHHHHhC-----CCceEEEEECchhcCCChhHhcccccccccccccccceEE-----eCCH-HH
Confidence 5899999 699999999977654 12344322 222 11222221 111111 1133 34
Q ss_pred cCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 176 ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 176 ~~~ADIViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
+.++|+||+|+|.....++.+.+. +.|..+++.++-
T Consensus 77 ~~~vDvvf~a~p~~~s~~~a~~~~---~~G~~vIDlSa~ 112 (359)
T 4dpk_A 77 MDDVDIIFSPLPQGAAGPVEEQFA---KEGFPVISNSPD 112 (359)
T ss_dssp CTTCCEEEECCCTTTHHHHHHHHH---HTTCEEEECSST
T ss_pred hcCCCEEEECCChHHHHHHHHHHH---HCCCEEEEcCCC
Confidence 579999999999988888777654 458888877663
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=93.32 E-value=0.24 Score=49.54 Aligned_cols=89 Identities=12% Similarity=0.067 Sum_probs=55.2
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEE-ecC-ChhhHHHH-------------HHcCceecCCCcCCHHhh
Q 014834 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVG-LRK-GSRSFAEA-------------RAAGFTEENGTLGDIYET 175 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg-~r~-~s~s~~~A-------------~~~G~~~~~~~~~s~~Ea 175 (417)
.|||||| .|..|.-+.+-|.+. ..+++... .++ ..+..... .+.-+. ..+. +.
T Consensus 8 ~kVaIvGATGyvG~eLlrlL~~h-----P~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~-----~~~~-~~ 76 (359)
T 4dpl_A 8 LKAAILGATGLVGIEYVRMLSNH-----PYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIK-----PTDP-KL 76 (359)
T ss_dssp EEEEETTTTSTTHHHHHHHHTTC-----SSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCE-----ECCG-GG
T ss_pred CeEEEECCCCHHHHHHHHHHHhC-----CCceEEEEECchhcCCChhHhcccccccccccccccceEE-----eCCH-HH
Confidence 5899999 699999999977654 12344322 222 11222221 111111 1133 34
Q ss_pred cCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 176 ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 176 ~~~ADIViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
+.++|+||+|+|.....++.+.+. +.|..+++.++-
T Consensus 77 ~~~vDvvf~a~p~~~s~~~a~~~~---~~G~~vIDlSa~ 112 (359)
T 4dpl_A 77 MDDVDIIFSPLPQGAAGPVEEQFA---KEGFPVISNSPD 112 (359)
T ss_dssp CTTCCEEEECCCTTTHHHHHHHHH---HTTCEEEECSST
T ss_pred hcCCCEEEECCChHHHHHHHHHHH---HCCCEEEEcCCC
Confidence 579999999999988888777654 458888877663
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=93.31 E-value=0.27 Score=46.98 Aligned_cols=76 Identities=18% Similarity=0.101 Sum_probs=51.2
Q ss_pred hhccCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHH---HH-------cCceecCCCcCC---
Q 014834 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA---RA-------AGFTEENGTLGD--- 171 (417)
Q Consensus 106 ~~l~gmkkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A---~~-------~G~~~~~~~~~s--- 171 (417)
..+++ |+|.|.| .|-+|..+++.|.+. |++|++..|......... .. .++....+.+.+
T Consensus 21 ~~~~~-~~vlVtGatG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~ 93 (351)
T 3ruf_A 21 LIFSP-KTWLITGVAGFIGSNLLEKLLKL------NQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTT 93 (351)
T ss_dssp HHHSC-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHH
T ss_pred CCCCC-CeEEEECCCcHHHHHHHHHHHHC------CCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHH
Confidence 34566 9999999 599999999999999 999988777543222221 11 233321122333
Q ss_pred HHhhcCcCCEEEEccCC
Q 014834 172 IYETISGSDLVLLLISD 188 (417)
Q Consensus 172 ~~Ea~~~ADIViLavpd 188 (417)
..++++++|+||.+...
T Consensus 94 ~~~~~~~~d~Vih~A~~ 110 (351)
T 3ruf_A 94 CEQVMKGVDHVLHQAAL 110 (351)
T ss_dssp HHHHTTTCSEEEECCCC
T ss_pred HHHHhcCCCEEEECCcc
Confidence 45678899999988753
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=93.29 E-value=0.24 Score=48.22 Aligned_cols=91 Identities=19% Similarity=0.160 Sum_probs=61.9
Q ss_pred cCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhc------CcCCE
Q 014834 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI------SGSDL 181 (417)
Q Consensus 109 ~gmkkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~------~~ADI 181 (417)
.| ++|.|+| .|.+|.+.++.++.. |.+|++. ++ ....+.+++.|....+ ...+..+.+ ...|+
T Consensus 150 ~g-~~VlV~Ga~g~iG~~~~q~a~~~------Ga~Vi~~-~~-~~~~~~~~~lGa~~i~-~~~~~~~~~~~~~~~~g~D~ 219 (343)
T 3gaz_A 150 DG-QTVLIQGGGGGVGHVAIQIALAR------GARVFAT-AR-GSDLEYVRDLGATPID-ASREPEDYAAEHTAGQGFDL 219 (343)
T ss_dssp TT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEE-EC-HHHHHHHHHHTSEEEE-TTSCHHHHHHHHHTTSCEEE
T ss_pred CC-CEEEEecCCCHHHHHHHHHHHHC------CCEEEEE-eC-HHHHHHHHHcCCCEec-cCCCHHHHHHHHhcCCCceE
Confidence 56 8999999 799999999999988 9988766 44 3446778888875322 122333322 35899
Q ss_pred EEEccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 014834 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 182 ViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~G 213 (417)
||-++... .++.....++++-.++..++
T Consensus 220 vid~~g~~----~~~~~~~~l~~~G~iv~~g~ 247 (343)
T 3gaz_A 220 VYDTLGGP----VLDASFSAVKRFGHVVSCLG 247 (343)
T ss_dssp EEESSCTH----HHHHHHHHEEEEEEEEESCC
T ss_pred EEECCCcH----HHHHHHHHHhcCCeEEEEcc
Confidence 99998853 34444456666666555444
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=93.28 E-value=0.51 Score=48.52 Aligned_cols=95 Identities=19% Similarity=0.171 Sum_probs=65.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcC-ceecCCCcCC----HHhhcCcCCEEEEcc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGD----IYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G-~~~~~~~~~s----~~Ea~~~ADIViLav 186 (417)
++|-|+|.|++|..+|+.|.+ +++|.+-.+...+....+.+.. ..+.+|...+ .++-+.++|+++-+|
T Consensus 236 ~~v~I~GgG~ig~~lA~~L~~-------~~~v~iIE~d~~r~~~la~~l~~~~Vi~GD~td~~~L~ee~i~~~D~~ia~T 308 (461)
T 4g65_A 236 RRIMIVGGGNIGASLAKRLEQ-------TYSVKLIERNLQRAEKLSEELENTIVFCGDAADQELLTEENIDQVDVFIALT 308 (461)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-------TSEEEEEESCHHHHHHHHHHCTTSEEEESCTTCHHHHHHTTGGGCSEEEECC
T ss_pred cEEEEEcchHHHHHHHHHhhh-------cCceEEEecCHHHHHHHHHHCCCceEEeccccchhhHhhcCchhhcEEEEcc
Confidence 899999999999999999854 5788877776666666776642 2222233333 235689999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecC
Q 014834 187 SDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiLi~a~G 213 (417)
.+...-=+..-++..+...+++....-
T Consensus 309 ~~De~Ni~~~llAk~~gv~kvIa~vn~ 335 (461)
T 4g65_A 309 NEDETNIMSAMLAKRMGAKKVMVLIQR 335 (461)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred cCcHHHHHHHHHHHHcCCccccccccc
Confidence 987654344445666766667775553
|
| >3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis} | Back alignment and structure |
|---|
Probab=93.22 E-value=0.22 Score=49.53 Aligned_cols=68 Identities=15% Similarity=0.075 Sum_probs=49.8
Q ss_pred hccCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecCChh------hHHHHH----H--cCc--eecCCCcC
Q 014834 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR------SFAEAR----A--AGF--TEENGTLG 170 (417)
Q Consensus 107 ~l~gmkkIgIIG~G--~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~------s~~~A~----~--~G~--~~~~~~~~ 170 (417)
.++| .||++||=+ ++..+++..+..- |.+|.+.....-. ..+.++ + .|. .. +.
T Consensus 158 ~l~g-l~va~vGD~~~~va~Sl~~~~~~~------G~~v~~~~P~~~~~~p~~~~~~~~~~~~~~~~~g~~v~~----~~ 226 (328)
T 3grf_A 158 GFKG-IKFAYCGDSMNNVTYDLMRGCALL------GMECHVCCPDHKDFKPIKEVIDECEEIIAKHGTGGSIKI----FH 226 (328)
T ss_dssp TGGG-CCEEEESCCSSHHHHHHHHHHHHH------TCEEEEECCSSGGGSCCHHHHHHHHHHHHHHTCCCEEEE----ES
T ss_pred ccCC-cEEEEeCCCCcchHHHHHHHHHHc------CCEEEEECChHhhhCCCHHHHHHHHHHHhhccCCCeEEE----Ec
Confidence 5889 999999976 8899999998888 9988776543211 222333 3 463 33 57
Q ss_pred CHHhhcCcCCEEEEc
Q 014834 171 DIYETISGSDLVLLL 185 (417)
Q Consensus 171 s~~Ea~~~ADIViLa 185 (417)
+++|+++++|+|..-
T Consensus 227 d~~eav~~aDvvytd 241 (328)
T 3grf_A 227 DCKKGCEGVDVVYTD 241 (328)
T ss_dssp SHHHHHTTCSEEEEC
T ss_pred CHHHHhcCCCEEEec
Confidence 899999999999863
|
| >3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=93.17 E-value=0.25 Score=51.50 Aligned_cols=76 Identities=21% Similarity=0.086 Sum_probs=51.1
Q ss_pred hhhccCCCEEEEEcccchHHH-HHHHHHhhhhhhcCCcEEEEEecCCh-hhHHHHHHcCceecCCCcCCHHhhcCcCCEE
Q 014834 105 PDAFNGINQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G~mG~A-iA~~Lr~s~~~~~~G~~ViVg~r~~s-~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIV 182 (417)
.-+|++ ++|-|||.|-.|.+ +|+-|++. |++|.+.+.... ...+..++.|+....| .+.++...++|+|
T Consensus 14 ~~~~~~-~~i~~iGiGg~Gms~lA~~l~~~------G~~V~~sD~~~~~~~~~~L~~~gi~~~~G--~~~~~~~~~~d~v 84 (524)
T 3hn7_A 14 NLYFQG-MHIHILGICGTFMGSLALLARAL------GHTVTGSDANIYPPMSTQLEQAGVTIEEG--YLIAHLQPAPDLV 84 (524)
T ss_dssp -----C-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCCCTTHHHHHHHTTCEEEES--CCGGGGCSCCSEE
T ss_pred ceeecC-CEEEEEEecHhhHHHHHHHHHhC------CCEEEEECCCCCcHHHHHHHHCCCEEECC--CCHHHcCCCCCEE
Confidence 356777 99999999999996 78888988 999988876532 3344556678875211 2344555679999
Q ss_pred EEc--cCCc
Q 014834 183 LLL--ISDA 189 (417)
Q Consensus 183 iLa--vpd~ 189 (417)
|+. +|+.
T Consensus 85 V~Spgi~~~ 93 (524)
T 3hn7_A 85 VVGNAMKRG 93 (524)
T ss_dssp EECTTCCTT
T ss_pred EECCCcCCC
Confidence 984 5543
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=93.13 E-value=0.36 Score=49.57 Aligned_cols=87 Identities=14% Similarity=0.106 Sum_probs=57.6
Q ss_pred cccchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHH-HHHcCceecCCCcCCHHhhcCcC
Q 014834 101 FKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-ARAAGFTEENGTLGDIYETISGS 179 (417)
Q Consensus 101 f~~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~-A~~~G~~~~~~~~~s~~Ea~~~A 179 (417)
||.. -.++| ++|.|||.|..|.+-++.|.+. |.+|+|.........+. +.+.++....+. .+ .+-+.++
T Consensus 4 ~P~~-~~l~~-~~vlVvGgG~va~~k~~~L~~~------ga~V~vi~~~~~~~~~~l~~~~~i~~~~~~-~~-~~~l~~~ 73 (457)
T 1pjq_A 4 LPIF-CQLRD-RDCLIVGGGDVAERKARLLLEA------GARLTVNALTFIPQFTVWANEGMLTLVEGP-FD-ETLLDSC 73 (457)
T ss_dssp EEEE-ECCBT-CEEEEECCSHHHHHHHHHHHHT------TBEEEEEESSCCHHHHHHHTTTSCEEEESS-CC-GGGGTTC
T ss_pred eeeE-EECCC-CEEEEECCCHHHHHHHHHHHhC------cCEEEEEcCCCCHHHHHHHhcCCEEEEECC-CC-ccccCCc
Confidence 4443 45789 9999999999999999999999 99988877643333222 222344331111 12 2346789
Q ss_pred CEEEEccCCchH-HHHHHH
Q 014834 180 DLVLLLISDAAQ-ADNYEK 197 (417)
Q Consensus 180 DIViLavpd~~~-~~Vl~e 197 (417)
|+||.++.+... ..++..
T Consensus 74 ~lVi~at~~~~~n~~i~~~ 92 (457)
T 1pjq_A 74 WLAIAATDDDTVNQRVSDA 92 (457)
T ss_dssp SEEEECCSCHHHHHHHHHH
T ss_pred cEEEEcCCCHHHHHHHHHH
Confidence 999998887754 345543
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=93.13 E-value=0.24 Score=48.05 Aligned_cols=92 Identities=13% Similarity=0.158 Sum_probs=60.0
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec-CCCcCCHHhhc----CcCCEEE
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI----SGSDLVL 183 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~-~~~~~s~~Ea~----~~ADIVi 183 (417)
.| ++|.|+|.|.+|...++-++.. |.+|++..++ +...+.+++.|.... |-...+..+.+ ...|+||
T Consensus 164 ~g-~~VlV~GaG~vG~~~~~~a~~~------Ga~Vi~~~~~-~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~vi 235 (339)
T 1rjw_A 164 PG-EWVAIYGIGGLGHVAVQYAKAM------GLNVVAVDIG-DEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAV 235 (339)
T ss_dssp TT-CEEEEECCSTTHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEeCC-HHHHHHHHHCCCCEEecCCCccHHHHHHHHhCCCCEEE
Confidence 46 8999999999999999999988 9988766554 445677778886320 11111222222 4689999
Q ss_pred EccCCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 184 Lavpd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
-++... ..++...+.++++-.++..
T Consensus 236 d~~g~~---~~~~~~~~~l~~~G~~v~~ 260 (339)
T 1rjw_A 236 VTAVSK---PAFQSAYNSIRRGGACVLV 260 (339)
T ss_dssp ESSCCH---HHHHHHHHHEEEEEEEEEC
T ss_pred ECCCCH---HHHHHHHHHhhcCCEEEEe
Confidence 998752 2344444556666555433
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=93.13 E-value=0.44 Score=46.60 Aligned_cols=92 Identities=20% Similarity=0.165 Sum_probs=60.2
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcCceec-CCCc--CCHHhhcC-----cC
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETIS-----GS 179 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G~~~~-~~~~--~s~~Ea~~-----~A 179 (417)
.| .+|.|+|.|.+|...++-++.. |. +|++..++ +...+.+++.|.... +..- .+..+.++ ..
T Consensus 190 ~g-~~VlV~GaG~vG~~avqla~~~------Ga~~Vi~~~~~-~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~ 261 (373)
T 2fzw_A 190 PG-SVCAVFGLGGVGLAVIMGCKVA------GASRIIGVDIN-KDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGV 261 (373)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECSC-GGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEcCC-HHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCC
Confidence 46 8999999999999999999988 88 67655544 445677888886420 1000 12333222 58
Q ss_pred CEEEEccCCchHHHHHHHHHhcCCCC-cEEEEe
Q 014834 180 DLVLLLISDAAQADNYEKIFSCMKPN-SILGLS 211 (417)
Q Consensus 180 DIViLavpd~~~~~Vl~eI~~~lk~g-aiLi~a 211 (417)
|+||-++... +.++.....++++ -.++..
T Consensus 262 D~vid~~g~~---~~~~~~~~~l~~~~G~iv~~ 291 (373)
T 2fzw_A 262 DYSFECIGNV---KVMRAALEACHKGWGVSVVV 291 (373)
T ss_dssp SEEEECSCCH---HHHHHHHHTBCTTTCEEEEC
T ss_pred CEEEECCCcH---HHHHHHHHhhccCCcEEEEE
Confidence 9999998752 2345555677776 555433
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=93.12 E-value=0.1 Score=50.44 Aligned_cols=81 Identities=14% Similarity=0.151 Sum_probs=48.0
Q ss_pred cccchhhccCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcC-C---HHhh
Q 014834 101 FKLLPDAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG-D---IYET 175 (417)
Q Consensus 101 f~~~~~~l~gmkkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~-s---~~Ea 175 (417)
++.++..+++ |+|.|+| .|.+|..+++.|.+. .|++|++..|..++........++....+.+. + +.++
T Consensus 15 ~~~~~~~m~~-~~vlVtGatG~iG~~l~~~L~~~-----~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~ 88 (372)
T 3slg_A 15 QTQGPGSMKA-KKVLILGVNGFIGHHLSKRILET-----TDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYH 88 (372)
T ss_dssp --------CC-CEEEEESCSSHHHHHHHHHHHHH-----SSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHH
T ss_pred hhcCCcccCC-CEEEEECCCChHHHHHHHHHHhC-----CCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHH
Confidence 5566677777 9999999 699999999999875 16888887776543222222234332112223 3 4457
Q ss_pred cCcCCEEEEccC
Q 014834 176 ISGSDLVLLLIS 187 (417)
Q Consensus 176 ~~~ADIViLavp 187 (417)
++++|+||-+.-
T Consensus 89 ~~~~d~Vih~A~ 100 (372)
T 3slg_A 89 VKKCDVILPLVA 100 (372)
T ss_dssp HHHCSEEEECBC
T ss_pred hccCCEEEEcCc
Confidence 789999997543
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=93.11 E-value=0.34 Score=47.70 Aligned_cols=92 Identities=20% Similarity=0.254 Sum_probs=60.9
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcCceec-CCC--cCCHHhhcC-----cC
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGT--LGDIYETIS-----GS 179 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G~~~~-~~~--~~s~~Ea~~-----~A 179 (417)
.| .+|.|+|.|.+|...++-++.. |. +|++..++ +...+.+++.|.... +.. ..+..+.++ ..
T Consensus 193 ~g-~~VlV~GaG~vG~~a~q~a~~~------Ga~~Vi~~~~~-~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~ 264 (378)
T 3uko_A 193 PG-SNVAIFGLGTVGLAVAEGAKTA------GASRIIGIDID-SKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGV 264 (378)
T ss_dssp TT-CCEEEECCSHHHHHHHHHHHHH------TCSCEEEECSC-TTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEcCC-HHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCC
Confidence 46 8999999999999999999988 98 67655544 445778888887420 100 112233222 48
Q ss_pred CEEEEccCCchHHHHHHHHHhcCCCC-cEEEEe
Q 014834 180 DLVLLLISDAAQADNYEKIFSCMKPN-SILGLS 211 (417)
Q Consensus 180 DIViLavpd~~~~~Vl~eI~~~lk~g-aiLi~a 211 (417)
|+||-++... +.++.....++++ -.++..
T Consensus 265 D~vid~~g~~---~~~~~~~~~l~~g~G~iv~~ 294 (378)
T 3uko_A 265 DYSFECIGNV---SVMRAALECCHKGWGTSVIV 294 (378)
T ss_dssp SEEEECSCCH---HHHHHHHHTBCTTTCEEEEC
T ss_pred CEEEECCCCH---HHHHHHHHHhhccCCEEEEE
Confidence 9999998863 3345555677774 554433
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=93.10 E-value=0.44 Score=46.45 Aligned_cols=92 Identities=14% Similarity=0.107 Sum_probs=59.8
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcCceec-CCC---cCCHHhhc-----Cc
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGT---LGDIYETI-----SG 178 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G~~~~-~~~---~~s~~Ea~-----~~ 178 (417)
.| .+|.|+|.|.+|...++-++.. |. +|++..++ +...+.+++.|.... +.. ..+..+.+ ..
T Consensus 171 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi~~~~~-~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g 242 (356)
T 1pl8_A 171 LG-HKVLVCGAGPIGMVTLLVAKAM------GAAQVVVTDLS-ATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCK 242 (356)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEEESC-HHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSC
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEECCC-HHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCC
Confidence 56 8999999999999999998888 88 77665554 445678888886320 100 00111111 35
Q ss_pred CCEEEEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 179 ADIViLavpd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
.|+||-++.... .++.....++++-.++..
T Consensus 243 ~D~vid~~g~~~---~~~~~~~~l~~~G~iv~~ 272 (356)
T 1pl8_A 243 PEVTIECTGAEA---SIQAGIYATRSGGTLVLV 272 (356)
T ss_dssp CSEEEECSCCHH---HHHHHHHHSCTTCEEEEC
T ss_pred CCEEEECCCChH---HHHHHHHHhcCCCEEEEE
Confidence 899999987532 344445567776665543
|
| >3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=93.08 E-value=0.086 Score=51.60 Aligned_cols=70 Identities=13% Similarity=-0.013 Sum_probs=52.3
Q ss_pred hccCCCEEEEEcc---cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEE
Q 014834 107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 107 ~l~gmkkIgIIG~---G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIVi 183 (417)
.|+| .||++||= +++..+++..+... |.+|.+.....-.... ..+.|+.. +.+++|+++++|+|.
T Consensus 143 ~l~g-l~va~vGDl~~~rva~Sl~~~~~~~------g~~v~~~~P~~~~p~~-~~~~g~~~----~~d~~eav~~aDvvy 210 (291)
T 3d6n_B 143 EVKD-LRVLYVGDIKHSRVFRSGAPLLNMF------GAKIGVCGPKTLIPRD-VEVFKVDV----FDDVDKGIDWADVVI 210 (291)
T ss_dssp CCTT-CEEEEESCCTTCHHHHHHHHHHHHT------TCEEEEESCGGGSCTT-GGGGCEEE----ESSHHHHHHHCSEEE
T ss_pred CcCC-cEEEEECCCCCCchHHHHHHHHHHC------CCEEEEECCchhCCch-HHHCCCEE----EcCHHHHhCCCCEEE
Confidence 4788 99999997 89999999999988 9998776543211001 12457654 678999999999999
Q ss_pred EccCCc
Q 014834 184 LLISDA 189 (417)
Q Consensus 184 Lavpd~ 189 (417)
. +-.+
T Consensus 211 ~-~~~q 215 (291)
T 3d6n_B 211 W-LRLQ 215 (291)
T ss_dssp E-CCCC
T ss_pred E-eCcc
Confidence 9 5543
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=93.01 E-value=0.13 Score=50.53 Aligned_cols=91 Identities=20% Similarity=0.234 Sum_probs=59.7
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec-CCCcCCHHhhc------CcCCE
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSDL 181 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~-~~~~~s~~Ea~------~~ADI 181 (417)
.| ++|.|+|.|.+|...++-++.. |.+|++..+. ....+.+++.|.... +....+..+.+ ...|+
T Consensus 189 ~g-~~VlV~G~G~vG~~a~qla~~~------Ga~Vi~~~~~-~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~~g~g~D~ 260 (363)
T 3uog_A 189 AG-DRVVVQGTGGVALFGLQIAKAT------GAEVIVTSSS-REKLDRAFALGADHGINRLEEDWVERVYALTGDRGADH 260 (363)
T ss_dssp TT-CEEEEESSBHHHHHHHHHHHHT------TCEEEEEESC-HHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEecC-chhHHHHHHcCCCEEEcCCcccHHHHHHHHhCCCCceE
Confidence 46 8999999999999999999988 9988776655 345677888886421 11112322222 16899
Q ss_pred EEEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 182 ViLavpd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
||-++........ ...++++-.++..
T Consensus 261 vid~~g~~~~~~~----~~~l~~~G~iv~~ 286 (363)
T 3uog_A 261 ILEIAGGAGLGQS----LKAVAPDGRISVI 286 (363)
T ss_dssp EEEETTSSCHHHH----HHHEEEEEEEEEE
T ss_pred EEECCChHHHHHH----HHHhhcCCEEEEE
Confidence 9999886544333 3445565555544
|
| >2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics, PSI-2, protein structure initiative; 2.01A {Desulfitobacterium hafniense dcb-2} PDB: 3l5o_A | Back alignment and structure |
|---|
Probab=92.97 E-value=0.16 Score=49.06 Aligned_cols=83 Identities=14% Similarity=0.190 Sum_probs=52.1
Q ss_pred cccccchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCc
Q 014834 99 DLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG 178 (417)
Q Consensus 99 ~~f~~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ 178 (417)
+.|....+..+| +||++||+ | +.+.+.+ .. +.++.|.+++.. .|..+ ....++++++
T Consensus 130 d~~~~~~~~~~g-~kV~vIG~--~-P~i~~~l-~~------~~~v~V~d~~p~--------~g~~p----~~~~e~ll~~ 186 (270)
T 2h1q_A 130 DPFIMSQNEVKG-KKVGVVGH--F-PHLESLL-EP------ICDLSILEWSPE--------EGDYP----LPASEFILPE 186 (270)
T ss_dssp CHHHHTTTTTTT-SEEEEESC--C-TTHHHHH-TT------TSEEEEEESSCC--------TTCEE----GGGHHHHGGG
T ss_pred cHHHHHHhhcCC-CEEEEECC--C-HHHHHHH-hC------CCCEEEEECCCC--------CCCCC----hHHHHHHhhc
Confidence 456554466788 99999999 4 6666654 45 778988887643 24433 2346678999
Q ss_pred CCEEEEccCCchHHHHHHHHHhcCCCC
Q 014834 179 SDLVLLLISDAAQADNYEKIFSCMKPN 205 (417)
Q Consensus 179 ADIViLavpd~~~~~Vl~eI~~~lk~g 205 (417)
||+|++.-. ......++.|..+.++.
T Consensus 187 aD~viiTGs-TlvN~Ti~~lL~~~~~a 212 (270)
T 2h1q_A 187 CDYVYITCA-SVVDKTLPRLLELSRNA 212 (270)
T ss_dssp CSEEEEETH-HHHHTCHHHHHHHTTTS
T ss_pred CCEEEEEee-eeecCCHHHHHHhCccC
Confidence 999887532 22233444455444443
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=92.94 E-value=0.13 Score=51.68 Aligned_cols=91 Identities=13% Similarity=0.102 Sum_probs=52.4
Q ss_pred CCEEEEEc-ccchHHHHHHH-HHhhhhhhcCCc---EEEEE-ecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 111 INQIGVIG-WGSQGPAQAQN-LRDSLAEAKSDI---VVKVG-LRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 111 mkkIgIIG-~G~mG~AiA~~-Lr~s~~~~~~G~---~ViVg-~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
|+||||+| .|.+|.-+.+. |.+. ++ .+... .++..+.........+... ...+.++ .+++|+||.
T Consensus 1 m~kVaIvGAtG~vG~~llr~ll~~~------~~~~v~i~~~~~~s~G~~v~~~~g~~i~~~--~~~~~~~-~~~~DvVf~ 71 (367)
T 1t4b_A 1 MQNVGFIGWRGMVGSVLMQRMVEER------DFDAIRPVFFSTSQLGQAAPSFGGTTGTLQ--DAFDLEA-LKALDIIVT 71 (367)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT------GGGGSEEEEEESSSTTSBCCGGGTCCCBCE--ETTCHHH-HHTCSEEEE
T ss_pred CcEEEEECCCCHHHHHHHHHHHhcC------CCCeEEEEEEEeCCCCCCccccCCCceEEE--ecCChHH-hcCCCEEEE
Confidence 57999999 99999999994 4443 33 33322 2221111100000111110 0113344 578999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCc--EEEEecC
Q 014834 185 LISDAAQADNYEKIFSCMKPNS--ILGLSHG 213 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~ga--iLi~a~G 213 (417)
|+|.....+..+.+.. .|. +|++.++
T Consensus 72 a~g~~~s~~~a~~~~~---~G~k~vVID~ss 99 (367)
T 1t4b_A 72 CQGGDYTNEIYPKLRE---SGWQGYWIDAAS 99 (367)
T ss_dssp CSCHHHHHHHHHHHHH---TTCCCEEEECSS
T ss_pred CCCchhHHHHHHHHHH---CCCCEEEEcCCh
Confidence 9998777777766543 454 7777665
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.93 E-value=0.65 Score=45.08 Aligned_cols=92 Identities=16% Similarity=0.107 Sum_probs=60.1
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec-CCCc-CC-HH---hhc-----C
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTL-GD-IY---ETI-----S 177 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~-~~~~-~s-~~---Ea~-----~ 177 (417)
.| ++|.|+|.|.+|...++-++.. |.+|++..++ +...+.+++.|.... +... .+ .+ +.. .
T Consensus 168 ~g-~~VlV~GaG~vG~~a~qla~~~------Ga~Vi~~~~~-~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~ 239 (352)
T 1e3j_A 168 LG-TTVLVIGAGPIGLVSVLAAKAY------GAFVVCTARS-PRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGD 239 (352)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESC-HHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSS
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEcCC-HHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCC
Confidence 56 8999999999999999999888 9887655544 455677888886320 1110 11 11 222 3
Q ss_pred cCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 178 ~ADIViLavpd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
..|+||-++.... .++.....++++-.++..
T Consensus 240 g~D~vid~~g~~~---~~~~~~~~l~~~G~iv~~ 270 (352)
T 1e3j_A 240 LPNVTIDCSGNEK---CITIGINITRTGGTLMLV 270 (352)
T ss_dssp CCSEEEECSCCHH---HHHHHHHHSCTTCEEEEC
T ss_pred CCCEEEECCCCHH---HHHHHHHHHhcCCEEEEE
Confidence 5899999987642 344445567776655543
|
| >4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=92.92 E-value=0.29 Score=48.82 Aligned_cols=70 Identities=9% Similarity=-0.003 Sum_probs=48.7
Q ss_pred hccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecC----ChhhHHH----HHHcCceecCCCcCCHHhhcC
Q 014834 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAE----ARAAGFTEENGTLGDIYETIS 177 (417)
Q Consensus 107 ~l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~----~s~s~~~----A~~~G~~~~~~~~~s~~Ea~~ 177 (417)
.|+| .||++||= +++..+++..+..- |.+|.+.... ++...+. +.+.|.... .+.+++ +++
T Consensus 172 ~l~g-lkva~vGD~~rva~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~--~~~d~~-av~ 241 (339)
T 4a8t_A 172 KLED-CKVVFVGDATQVCFSLGLITTKM------GMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFL--VTDDAS-SVE 241 (339)
T ss_dssp CGGG-CEEEEESSCCHHHHHHHHHHHHT------TCEEEEECCTTSSCCHHHHHHHHHHHHHHCCEEE--EECCGG-GGT
T ss_pred CCCC-CEEEEECCCchhHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEE--EECChh-HHc
Confidence 5788 99999996 58889999988887 9988776543 1222222 344563210 156788 999
Q ss_pred cCCEEEEcc
Q 014834 178 GSDLVLLLI 186 (417)
Q Consensus 178 ~ADIViLav 186 (417)
+||+|+.-+
T Consensus 242 ~aDvvytd~ 250 (339)
T 4a8t_A 242 GADFLYTDV 250 (339)
T ss_dssp TCSEEEECC
T ss_pred CCCEEEecC
Confidence 999999743
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.91 E-value=0.21 Score=48.93 Aligned_cols=92 Identities=12% Similarity=0.078 Sum_probs=59.4
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcCcee-cCCCcCCHHhhcC-----cCCE
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTE-ENGTLGDIYETIS-----GSDL 181 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G~~~-~~~~~~s~~Ea~~-----~ADI 181 (417)
.| ++|.|+|.|.+|...++-++.. |. .|++..++ +...+.+++.|... .+....+..+.+. ..|+
T Consensus 190 ~g-~~VlV~GaG~vG~~a~qlak~~------Ga~~Vi~~~~~-~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~ 261 (371)
T 1f8f_A 190 PA-SSFVTWGAGAVGLSALLAAKVC------GASIIIAVDIV-ESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNF 261 (371)
T ss_dssp TT-CEEEEESCSHHHHHHHHHHHHH------TCSEEEEEESC-HHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEECCC-HHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcE
Confidence 46 8999999999999999998888 88 56555544 45567788888632 0111123222222 4799
Q ss_pred EEEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 182 ViLavpd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
||-++... +.++.....++++-.++..
T Consensus 262 vid~~g~~---~~~~~~~~~l~~~G~iv~~ 288 (371)
T 1f8f_A 262 ALESTGSP---EILKQGVDALGILGKIAVV 288 (371)
T ss_dssp EEECSCCH---HHHHHHHHTEEEEEEEEEC
T ss_pred EEECCCCH---HHHHHHHHHHhcCCEEEEe
Confidence 99998753 3344555666676655544
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.87 E-value=0.23 Score=49.23 Aligned_cols=95 Identities=25% Similarity=0.292 Sum_probs=61.2
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcCceecCCCcCC-HHhhc------CcCC
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGD-IYETI------SGSD 180 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s-~~Ea~------~~AD 180 (417)
.| .+|.|+|.|.+|...++-++.. |. .|++..+. +...+.+++.|....+-.-.+ ..+.+ ...|
T Consensus 185 ~g-~~VlV~GaG~vG~~aiqlAk~~------Ga~~Vi~~~~~-~~~~~~a~~lGa~~i~~~~~~~~~~~v~~~t~g~g~D 256 (398)
T 1kol_A 185 PG-STVYVAGAGPVGLAAAASARLL------GAAVVIVGDLN-PARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVD 256 (398)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEEESC-HHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEE
T ss_pred CC-CEEEEECCcHHHHHHHHHHHHC------CCCeEEEEcCC-HHHHHHHHHcCCcEEccCCcchHHHHHHHHhCCCCCC
Confidence 56 8999999999999999998888 88 56555444 455788888887431111111 22222 2579
Q ss_pred EEEEccCCch------------HHHHHHHHHhcCCCCcEEEEe
Q 014834 181 LVLLLISDAA------------QADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 181 IViLavpd~~------------~~~Vl~eI~~~lk~gaiLi~a 211 (417)
+||-++.... ....+++....++++-.++..
T Consensus 257 vvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 299 (398)
T 1kol_A 257 CAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 299 (398)
T ss_dssp EEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred EEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEe
Confidence 9999987542 112455555667676655543
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=92.83 E-value=0.49 Score=49.20 Aligned_cols=72 Identities=11% Similarity=0.112 Sum_probs=50.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHc-CceecCCCcCCHH---h-hcCcCCEEEEcc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIY---E-TISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~-G~~~~~~~~~s~~---E-a~~~ADIViLav 186 (417)
++|.|||+|..|..+++.|.+. |++|++.+.+ ....+.+.+. |+....|...+.+ + -+++||.|++ +
T Consensus 128 ~hviI~G~g~~g~~la~~L~~~------~~~vvvid~~-~~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~a~~vi~-t 199 (565)
T 4gx0_A 128 GHILIFGIDPITRTLIRKLESR------NHLFVVVTDN-YDQALHLEEQEGFKVVYGSPTDAHVLAGLRVAAARSIIA-N 199 (565)
T ss_dssp SCEEEESCCHHHHHHHHHTTTT------TCCEEEEESC-HHHHHHHHHSCSSEEEESCTTCHHHHHHTTGGGCSEEEE-C
T ss_pred CeEEEECCChHHHHHHHHHHHC------CCCEEEEECC-HHHHHHHHHhcCCeEEEeCCCCHHHHHhcCcccCCEEEE-e
Confidence 5899999999999999999998 9988776654 4455666666 7654323333322 2 3678999998 5
Q ss_pred CCchH
Q 014834 187 SDAAQ 191 (417)
Q Consensus 187 pd~~~ 191 (417)
+++..
T Consensus 200 ~~D~~ 204 (565)
T 4gx0_A 200 LSDPD 204 (565)
T ss_dssp SCHHH
T ss_pred CCcHH
Confidence 54443
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=92.78 E-value=0.19 Score=52.44 Aligned_cols=92 Identities=15% Similarity=0.169 Sum_probs=57.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc---EEEEEecCChhhHHHHHHcCceecCCCc--CC----HHhhcCcCCEE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGSRSFAEARAAGFTEENGTL--GD----IYETISGSDLV 182 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~---~ViVg~r~~s~s~~~A~~~G~~~~~~~~--~s----~~Ea~~~ADIV 182 (417)
+||.|||+|.||..++..|.++ .++ +|++.+..... .+.....|+....-.+ .+ +.+++++.|+|
T Consensus 14 ~rVlIIGaGgVG~~va~lla~~-----~dv~~~~I~vaD~~~~~-~~~~~~~g~~~~~~~Vdadnv~~~l~aLl~~~DvV 87 (480)
T 2ph5_A 14 NRFVILGFGCVGQALMPLIFEK-----FDIKPSQVTIIAAEGTK-VDVAQQYGVSFKLQQITPQNYLEVIGSTLEENDFL 87 (480)
T ss_dssp SCEEEECCSHHHHHHHHHHHHH-----BCCCGGGEEEEESSCCS-CCHHHHHTCEEEECCCCTTTHHHHTGGGCCTTCEE
T ss_pred CCEEEECcCHHHHHHHHHHHhC-----CCCceeEEEEeccchhh-hhHHhhcCCceeEEeccchhHHHHHHHHhcCCCEE
Confidence 5799999999999999999876 134 57777654322 2333344543211111 22 23466667999
Q ss_pred EEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 183 LLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 183 iLavpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
|.+.++.....+++.... .|.-.++.+
T Consensus 88 IN~s~~~~~l~Im~acle---aGv~YlDTa 114 (480)
T 2ph5_A 88 IDVSIGISSLALIILCNQ---KGALYINAA 114 (480)
T ss_dssp EECCSSSCHHHHHHHHHH---HTCEEEESS
T ss_pred EECCccccCHHHHHHHHH---cCCCEEECC
Confidence 999999877777765432 344444444
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=92.72 E-value=0.25 Score=50.89 Aligned_cols=93 Identities=17% Similarity=0.261 Sum_probs=67.1
Q ss_pred hccCCCEEEEEccc----------chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHH-Hc-CceecCCCcCCHHh
Q 014834 107 AFNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AA-GFTEENGTLGDIYE 174 (417)
Q Consensus 107 ~l~gmkkIgIIG~G----------~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~-~~-G~~~~~~~~~s~~E 174 (417)
.++| +||+|+|+- +-...++..|.+. |.+|.+++..-. +.++ .+ ++.. +.+.+|
T Consensus 319 ~~~~-~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~------g~~v~~~DP~~~---~~~~~~~~~~~~----~~~~~~ 384 (446)
T 4a7p_A 319 DVRG-KTVGILGLTFKPNTDDMRDAPSLSIIAALQDA------GATVKAYDPEGV---EQASKMLTDVEF----VENPYA 384 (446)
T ss_dssp CCTT-CEEEEECCSSSTTSCCCTTCSHHHHHHHHHHT------SCEEEEECSSCH---HHHGGGCSSCCB----CSCHHH
T ss_pred cCCC-CEEEEEEEEeCCCCcccccChHHHHHHHHHHC------CCEEEEECCCCC---HhHHHhcCCceE----ecChhH
Confidence 4688 999999997 7788999999998 999987765422 2222 22 4442 567889
Q ss_pred hcCcCCEEEEccCCchHHH-HHHHHHhcCCCCcEEEEecCc
Q 014834 175 TISGSDLVLLLISDAAQAD-NYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 175 a~~~ADIViLavpd~~~~~-Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
+++++|+|+++|.-....+ -++.+...|+. .+|++.-++
T Consensus 385 ~~~~ad~vvi~t~~~~f~~~d~~~~~~~~~~-~~i~D~r~~ 424 (446)
T 4a7p_A 385 AADGADALVIVTEWDAFRALDLTRIKNSLKS-PVLVDLRNI 424 (446)
T ss_dssp HHTTBSEEEECSCCTTTTSCCHHHHHTTBSS-CBEECSSCC
T ss_pred HhcCCCEEEEeeCCHHhhcCCHHHHHHhcCC-CEEEECCCC
Confidence 9999999999998766543 24567776754 567766554
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=92.71 E-value=0.16 Score=50.02 Aligned_cols=88 Identities=20% Similarity=0.171 Sum_probs=57.7
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHH-HcCceec-CCCcCC---HHhhcCcCCEEE
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEE-NGTLGD---IYETISGSDLVL 183 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~-~~G~~~~-~~~~~s---~~Ea~~~ADIVi 183 (417)
.| ++|.|+|.|.+|...++-++.. |.+|++..++.. ..+.+. +.|.... + ..+ +.++....|+||
T Consensus 187 ~g-~~VlV~GaG~vG~~~~q~a~~~------Ga~Vi~~~~~~~-~~~~~~~~lGa~~v~~--~~~~~~~~~~~~~~D~vi 256 (366)
T 1yqd_A 187 PG-KHIGIVGLGGLGHVAVKFAKAF------GSKVTVISTSPS-KKEEALKNFGADSFLV--SRDQEQMQAAAGTLDGII 256 (366)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCGG-GHHHHHHTSCCSEEEE--TTCHHHHHHTTTCEEEEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCHH-HHHHHHHhcCCceEEe--ccCHHHHHHhhCCCCEEE
Confidence 67 8999999999999999999988 998877666544 345555 6775320 0 112 233345689999
Q ss_pred EccCCc-hHHHHHHHHHhcCCCCcEEEE
Q 014834 184 LLISDA-AQADNYEKIFSCMKPNSILGL 210 (417)
Q Consensus 184 Lavpd~-~~~~Vl~eI~~~lk~gaiLi~ 210 (417)
-++... .....+ +.|+++-.++.
T Consensus 257 d~~g~~~~~~~~~----~~l~~~G~iv~ 280 (366)
T 1yqd_A 257 DTVSAVHPLLPLF----GLLKSHGKLIL 280 (366)
T ss_dssp ECCSSCCCSHHHH----HHEEEEEEEEE
T ss_pred ECCCcHHHHHHHH----HHHhcCCEEEE
Confidence 998854 333333 34555554443
|
| >3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=92.70 E-value=0.3 Score=48.97 Aligned_cols=68 Identities=15% Similarity=0.073 Sum_probs=48.7
Q ss_pred ccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecC----ChhhHHHHHHc--------CceecCCCcCCHHh
Q 014834 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEARAA--------GFTEENGTLGDIYE 174 (417)
Q Consensus 108 l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~----~s~s~~~A~~~--------G~~~~~~~~~s~~E 174 (417)
|+| .||+|||=+ ++..+++..+... |++|.+.... ++...+.+++. ++.. +.+++|
T Consensus 186 l~g-lkva~vGD~~nva~Sl~~~l~~l------G~~v~~~~P~~~~~~~~i~~~~~~~a~~~~~g~~~~~----~~d~~e 254 (353)
T 3sds_A 186 LEG-LKIAWVGDANNVLFDLAIAATKM------GVNVAVATPRGYEIPSHIVELIQKAREGVQSPGNLTQ----TTVPEV 254 (353)
T ss_dssp CTT-CEEEEESCCCHHHHHHHHHHHHT------TCEEEEECCTTCCCCHHHHHHHHHHHTTCSSCCCEEE----ESCHHH
T ss_pred cCC-CEEEEECCCchHHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHhhhhccCCCeEEE----ECCHHH
Confidence 588 999999976 6888888888777 9988776543 22223334332 3333 578999
Q ss_pred hcCcCCEEEEcc
Q 014834 175 TISGSDLVLLLI 186 (417)
Q Consensus 175 a~~~ADIViLav 186 (417)
++++||+|+.-+
T Consensus 255 av~~aDVvytd~ 266 (353)
T 3sds_A 255 AVKDADVIVTDT 266 (353)
T ss_dssp HTTTCSEEEECC
T ss_pred HhcCCCEEEeCC
Confidence 999999999754
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.65 E-value=0.15 Score=50.28 Aligned_cols=90 Identities=19% Similarity=0.257 Sum_probs=59.5
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec-CCCcCC---HHhhcCcCCEEEE
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGD---IYETISGSDLVLL 184 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~-~~~~~s---~~Ea~~~ADIViL 184 (417)
.| .+|.|+|.|.+|...++-++.. |.+|++..++ +...+.+++.|.... + ..+ .+++....|+||-
T Consensus 194 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~Vi~~~~~-~~~~~~a~~lGa~~vi~--~~~~~~~~~~~~g~Dvvid 263 (369)
T 1uuf_A 194 PG-KKVGVVGIGGLGHMGIKLAHAM------GAHVVAFTTS-EAKREAAKALGADEVVN--SRNADEMAAHLKSFDFILN 263 (369)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESS-GGGHHHHHHHTCSEEEE--TTCHHHHHTTTTCEEEEEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHcCCcEEec--cccHHHHHHhhcCCCEEEE
Confidence 46 8999999999999999999888 9887666655 345677788886420 0 111 2233356899999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
++.... .++.....++++-.++..
T Consensus 264 ~~g~~~---~~~~~~~~l~~~G~iv~~ 287 (369)
T 1uuf_A 264 TVAAPH---NLDDFTTLLKRDGTMTLV 287 (369)
T ss_dssp CCSSCC---CHHHHHTTEEEEEEEEEC
T ss_pred CCCCHH---HHHHHHHHhccCCEEEEe
Confidence 988542 133344566666555543
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=92.65 E-value=0.13 Score=48.83 Aligned_cols=90 Identities=21% Similarity=0.180 Sum_probs=59.6
Q ss_pred cCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec-CCCc-CCHHhhcCcCCEEEEc
Q 014834 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTL-GDIYETISGSDLVLLL 185 (417)
Q Consensus 109 ~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~-~~~~-~s~~Ea~~~ADIViLa 185 (417)
.| ++|.|+|. |.+|...++-++.. |.+|++..++.. ..+.+++.|.... +... .+..+.+...|+||-
T Consensus 125 ~g-~~vlV~Ga~G~vG~~~~~~a~~~------Ga~Vi~~~~~~~-~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vid- 195 (302)
T 1iz0_A 125 PG-EKVLVQAAAGALGTAAVQVARAM------GLRVLAAASRPE-KLALPLALGAEEAATYAEVPERAKAWGGLDLVLE- 195 (302)
T ss_dssp TT-CEEEESSTTBHHHHHHHHHHHHT------TCEEEEEESSGG-GSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE-
T ss_pred CC-CEEEEECCCcHHHHHHHHHHHHC------CCEEEEEeCCHH-HHHHHHhcCCCEEEECCcchhHHHHhcCceEEEE-
Confidence 46 89999998 99999999999988 988877766543 4566777886420 0000 112233467899999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 186 vpd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
+... .++.....++++-.++..
T Consensus 196 ~g~~----~~~~~~~~l~~~G~~v~~ 217 (302)
T 1iz0_A 196 VRGK----EVEESLGLLAHGGRLVYI 217 (302)
T ss_dssp CSCT----THHHHHTTEEEEEEEEEC
T ss_pred CCHH----HHHHHHHhhccCCEEEEE
Confidence 7763 344555667766555543
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=92.62 E-value=0.2 Score=48.47 Aligned_cols=37 Identities=16% Similarity=0.194 Sum_probs=32.5
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~ 149 (417)
-.++| ++|.|||.|..|..-++.|.+. |.+|+|....
T Consensus 9 ~~l~~-k~VLVVGgG~va~rka~~Ll~~------Ga~VtViap~ 45 (274)
T 1kyq_A 9 HQLKD-KRILLIGGGEVGLTRLYKLMPT------GCKLTLVSPD 45 (274)
T ss_dssp ECCTT-CEEEEEEESHHHHHHHHHHGGG------TCEEEEEEEE
T ss_pred EEcCC-CEEEEECCcHHHHHHHHHHHhC------CCEEEEEcCC
Confidence 45789 9999999999999999999999 9988777543
|
| >2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=92.58 E-value=0.31 Score=49.97 Aligned_cols=68 Identities=16% Similarity=0.170 Sum_probs=50.1
Q ss_pred ccCCCEEEEEc-----cc---chHHHHHHHHHhhhhhhcCCcEEEEEecCC----hhhHHH----HHHcCc--eecCCCc
Q 014834 108 FNGINQIGVIG-----WG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGF--TEENGTL 169 (417)
Q Consensus 108 l~gmkkIgIIG-----~G---~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~----s~s~~~----A~~~G~--~~~~~~~ 169 (417)
|+| .||+||| +| ++..+++..+... |++|.+..... +...+. +.+.|. .. +
T Consensus 186 l~G-lkva~vgd~~~s~Gd~nnVa~Sli~~l~~l------G~~v~l~~P~~~~~~p~~~~~a~~~a~~~G~~v~~----~ 254 (418)
T 2yfk_A 186 LKG-KKVAMTWAYSPSYGKPLSVPQGIVGLMTRL------GMDVVLAHPEGYEIMPEVEEVAKKNAAEFGGNFTK----T 254 (418)
T ss_dssp GTT-CEEEEECCCCSSSCCCSHHHHHHHHHHGGG------TCEEEEECCTTCCCCHHHHHHHHHHHHHHSSEEEE----E
T ss_pred cCC-CEEEEEeccccccCccchHHHHHHHHHHHc------CCEEEEECCccccCCHHHHHHHHHHHHHcCCEEEE----E
Confidence 778 8999997 34 4999999999888 99988776542 222222 344664 33 5
Q ss_pred CCHHhhcCcCCEEEEcc
Q 014834 170 GDIYETISGSDLVLLLI 186 (417)
Q Consensus 170 ~s~~Ea~~~ADIViLav 186 (417)
.+++|++++||+|+.-+
T Consensus 255 ~d~~eav~~ADVVytd~ 271 (418)
T 2yfk_A 255 NSMAEAFKDADVVYPKS 271 (418)
T ss_dssp SCHHHHHTTCSEEEECC
T ss_pred cCHHHHhcCCCEEEEcc
Confidence 78999999999999875
|
| >3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* | Back alignment and structure |
|---|
Probab=92.55 E-value=0.28 Score=49.17 Aligned_cols=95 Identities=18% Similarity=0.139 Sum_probs=54.4
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEec-C-ChhhHHHHHH----cC------------ceecCC----
Q 014834 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR-K-GSRSFAEARA----AG------------FTEENG---- 167 (417)
Q Consensus 110 gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r-~-~s~s~~~A~~----~G------------~~~~~~---- 167 (417)
.|.||||+|+|.+|.-+.+.|.+. .+++|+..++ . +........+ .| +.. ++
T Consensus 16 ~~ikVgI~G~G~iGr~llR~l~~~-----p~veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v-~g~~i~ 89 (354)
T 3cps_A 16 FQGTLGINGFGRIGRLVLRACMER-----NDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCI-NGKVVK 89 (354)
T ss_dssp --CEEEEECCSHHHHHHHHHHHTC-----SSCEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEE-TTEEEE
T ss_pred cceEEEEECCCHHHHHHHHHHHcC-----CCeEEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEE-CCeEEE
Confidence 347999999999999999988764 1467654444 2 2111111111 11 000 00
Q ss_pred Cc--CCHHhhc---CcCCEEEEccCCchHHHHHHHHHhcCCCCc--EEEEecC
Q 014834 168 TL--GDIYETI---SGSDLVLLLISDAAQADNYEKIFSCMKPNS--ILGLSHG 213 (417)
Q Consensus 168 ~~--~s~~Ea~---~~ADIViLavpd~~~~~Vl~eI~~~lk~ga--iLi~a~G 213 (417)
.. .+++++- .++|+||.|+|.....+..+ .+++.|. +|+.+++
T Consensus 90 v~~~~dp~~i~w~~~~vDvV~eatg~~~s~e~a~---~~l~~GakkvVId~pa 139 (354)
T 3cps_A 90 VFQAKDPAEIPWGASGAQIVCESTGVFTTEEKAS---LHLKGGAKKVIISAPP 139 (354)
T ss_dssp EECCSCGGGCCHHHHTCCEEEECSSSCCSHHHHG---GGGTTTCSEEEESSCC
T ss_pred EEecCChHHCCcccCCCCEEEECCCchhhHHHHH---HHHHcCCcEEEEeCCC
Confidence 01 1344431 47899999999877765553 4566676 7775554
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=92.51 E-value=0.14 Score=47.65 Aligned_cols=65 Identities=15% Similarity=0.178 Sum_probs=45.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCC---HHhhcCc-CCEEEEccC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISG-SDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s---~~Ea~~~-ADIViLavp 187 (417)
|||.|+|.|.+|..+++.|.+. |++|++..|..++. ..++....+.+.+ +.++++. +|+||.+..
T Consensus 4 ~~ilVtGaG~iG~~l~~~L~~~------g~~V~~~~r~~~~~-----~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~ 72 (286)
T 3gpi_A 4 SKILIAGCGDLGLELARRLTAQ------GHEVTGLRRSAQPM-----PAGVQTLIADVTRPDTLASIVHLRPEILVYCVA 72 (286)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCCEEEEECTTSCC-----CTTCCEEECCTTCGGGCTTGGGGCCSEEEECHH
T ss_pred CcEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCcccc-----ccCCceEEccCCChHHHHHhhcCCCCEEEEeCC
Confidence 7999999999999999999999 99998877764431 1232211111222 3345666 999998764
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=92.49 E-value=0.44 Score=45.70 Aligned_cols=75 Identities=19% Similarity=0.105 Sum_probs=50.2
Q ss_pred hccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhh---HHHHH-------HcCceecCCCcCC---H
Q 014834 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS---FAEAR-------AAGFTEENGTLGD---I 172 (417)
Q Consensus 107 ~l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s---~~~A~-------~~G~~~~~~~~~s---~ 172 (417)
.+++ ++|.|.|. |-+|.++++.|.+. |++|++..|..... .+... ..++....+.+.+ +
T Consensus 24 ~~~~-~~vlVtGatG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~ 96 (352)
T 1sb8_A 24 PAQP-KVWLITGVAGFIGSNLLETLLKL------DQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDC 96 (352)
T ss_dssp HHSC-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHH
T ss_pred CccC-CeEEEECCCcHHHHHHHHHHHHC------CCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHH
Confidence 3666 89999998 99999999999999 99988877754321 11111 1333221112233 4
Q ss_pred HhhcCcCCEEEEccCC
Q 014834 173 YETISGSDLVLLLISD 188 (417)
Q Consensus 173 ~Ea~~~ADIViLavpd 188 (417)
.+++++.|+||.+...
T Consensus 97 ~~~~~~~d~vih~A~~ 112 (352)
T 1sb8_A 97 NNACAGVDYVLHQAAL 112 (352)
T ss_dssp HHHHTTCSEEEECCSC
T ss_pred HHHhcCCCEEEECCcc
Confidence 5678899999998653
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=92.44 E-value=0.44 Score=48.00 Aligned_cols=88 Identities=14% Similarity=0.109 Sum_probs=60.9
Q ss_pred cCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCH---------------
Q 014834 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI--------------- 172 (417)
Q Consensus 109 ~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~--------------- 172 (417)
.| ++|.|+|. |.+|.+.++.++.. |.+|++..++ ....+.+++.|... +.+.
T Consensus 220 ~g-~~VlV~GasG~iG~~a~qla~~~------Ga~vi~~~~~-~~~~~~~~~lGa~~----~i~~~~~~~~~~~~~~~~~ 287 (447)
T 4a0s_A 220 QG-DIVLIWGASGGLGSYAIQFVKNG------GGIPVAVVSS-AQKEAAVRALGCDL----VINRAELGITDDIADDPRR 287 (447)
T ss_dssp TT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHTTCCC----EEEHHHHTCCTTGGGCHHH
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHc------CCEEEEEeCC-HHHHHHHHhcCCCE----EEecccccccccccccccc
Confidence 46 89999998 99999999999988 9988776654 45567788888642 1111
Q ss_pred ---------H---hh-cCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 173 ---------Y---ET-ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 173 ---------~---Ea-~~~ADIViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
+ +. -...|+||-++... .++.....++++-.++..+
T Consensus 288 ~~~~~~~~~~~v~~~~g~g~Dvvid~~G~~----~~~~~~~~l~~~G~iv~~G 336 (447)
T 4a0s_A 288 VVETGRKLAKLVVEKAGREPDIVFEHTGRV----TFGLSVIVARRGGTVVTCG 336 (447)
T ss_dssp HHHHHHHHHHHHHHHHSSCCSEEEECSCHH----HHHHHHHHSCTTCEEEESC
T ss_pred cchhhhHHHHHHHHHhCCCceEEEECCCch----HHHHHHHHHhcCCEEEEEe
Confidence 1 11 13589999988853 4455556677776665443
|
| >3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* | Back alignment and structure |
|---|
Probab=92.41 E-value=0.12 Score=51.05 Aligned_cols=68 Identities=22% Similarity=0.159 Sum_probs=44.4
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCh-hhHHHHHHcCceecCCCcCC---HHhhcCcCCEE
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGD---IYETISGSDLV 182 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s-~s~~~A~~~G~~~~~~~~~s---~~Ea~~~ADIV 182 (417)
.+.| +||+|||.|..|..+++.+++. |++|++.+.... .....+ ..... ....+ +.+.++++|+|
T Consensus 11 ~~~~-k~IlIlG~G~~g~~la~aa~~~------G~~vi~~d~~~~~~~~~~a--d~~~~--~~~~d~~~l~~~~~~~dvI 79 (389)
T 3q2o_A 11 ILPG-KTIGIIGGGQLGRMMALAAKEM------GYKIAVLDPTKNSPCAQVA--DIEIV--ASYDDLKAIQHLAEISDVV 79 (389)
T ss_dssp CCTT-SEEEEECCSHHHHHHHHHHHHT------TCEEEEEESSTTCTTTTTC--SEEEE--CCTTCHHHHHHHHHTCSEE
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEeCCCCCchHHhC--CceEe--cCcCCHHHHHHHHHhCCEe
Confidence 4677 9999999999999999999998 999887764321 111111 11111 11223 45677788887
Q ss_pred EEc
Q 014834 183 LLL 185 (417)
Q Consensus 183 iLa 185 (417)
...
T Consensus 80 ~~~ 82 (389)
T 3q2o_A 80 TYE 82 (389)
T ss_dssp EES
T ss_pred eec
Confidence 553
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=92.40 E-value=0.13 Score=50.45 Aligned_cols=92 Identities=18% Similarity=0.185 Sum_probs=60.1
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec-CCCcC-CHHhhc-CcCCEEEEc
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLG-DIYETI-SGSDLVLLL 185 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~-~~~~~-s~~Ea~-~~ADIViLa 185 (417)
.| ++|.|+|.|.+|...++-++.. |.+|++..++. ...+.+++.|.... +.... +..+.+ ...|+||-+
T Consensus 179 ~g-~~VlV~GaG~vG~~~~qlak~~------Ga~Vi~~~~~~-~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~D~vid~ 250 (360)
T 1piw_A 179 PG-KKVGIVGLGGIGSMGTLISKAM------GAETYVISRSS-RKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVC 250 (360)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHH------TCEEEEEESSS-TTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEEC
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCH-HHHHHHHHcCCCEEEcCcCchHHHHHhhcCCCEEEEC
Confidence 46 8999999999999999999988 98877666554 34677778886420 00001 222333 468999999
Q ss_pred cCC--chHHHHHHHHHhcCCCCcEEEEe
Q 014834 186 ISD--AAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 186 vpd--~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
+.. .. .++...+.++++-.++..
T Consensus 251 ~g~~~~~---~~~~~~~~l~~~G~iv~~ 275 (360)
T 1piw_A 251 ASSLTDI---DFNIMPKAMKVGGRIVSI 275 (360)
T ss_dssp CSCSTTC---CTTTGGGGEEEEEEEEEC
T ss_pred CCCCcHH---HHHHHHHHhcCCCEEEEe
Confidence 875 21 233445566666655533
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=92.40 E-value=0.12 Score=51.10 Aligned_cols=92 Identities=11% Similarity=0.040 Sum_probs=54.4
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCh--hhHHHHHHcCceecCCCcCCH-HhhcCcCCEEEEcc
Q 014834 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDI-YETISGSDLVLLLI 186 (417)
Q Consensus 111 mkkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s--~s~~~A~~~G~~~~~~~~~s~-~Ea~~~ADIViLav 186 (417)
|+||+|+| .|.+|.-+.+.|.+.. -..++++...+..+ +... -.|... .+.+. .+...++|+||+|+
T Consensus 3 ~~kV~I~GAtG~iG~~llr~L~~~~---~p~~elv~i~s~~~~G~~~~---~~~~~i---~~~~~~~~~~~~vDvVf~a~ 73 (336)
T 2r00_A 3 QFNVAIFGATGAVGETMLEVLQERE---FPVDELFLLASERSEGKTYR---FNGKTV---RVQNVEEFDWSQVHIALFSA 73 (336)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTT---CCEEEEEEEECTTTTTCEEE---ETTEEE---EEEEGGGCCGGGCSEEEECS
T ss_pred ccEEEEECCCCHHHHHHHHHHhcCC---CCCEEEEEEECCCCCCCcee---ecCcee---EEecCChHHhcCCCEEEECC
Confidence 37999999 9999999999887650 00235544442211 1100 011110 01111 12346899999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
|.....+..+... +.|..+++.++-
T Consensus 74 g~~~s~~~a~~~~---~~G~~vId~s~~ 98 (336)
T 2r00_A 74 GGELSAKWAPIAA---EAGVVVIDNTSH 98 (336)
T ss_dssp CHHHHHHHHHHHH---HTTCEEEECSST
T ss_pred CchHHHHHHHHHH---HcCCEEEEcCCc
Confidence 9887777766543 457777877663
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=92.36 E-value=0.47 Score=48.57 Aligned_cols=96 Identities=18% Similarity=0.138 Sum_probs=65.9
Q ss_pred hccCCCEEEEEccc----------chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHc-------------Cce
Q 014834 107 AFNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-------------GFT 163 (417)
Q Consensus 107 ~l~gmkkIgIIG~G----------~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~-------------G~~ 163 (417)
.++| +||+|+|+- +-...++..|.+. |.+|.+++..-.. .+..... ++.
T Consensus 326 ~~~~-~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~------g~~v~~~DP~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 397 (467)
T 2q3e_A 326 TVTD-KKIAILGFAFKKDTGDTRESSSIYISKYLMDE------GAHLHIYDPKVPR-EQIVVDLSHPGVSEDDQVSRLVT 397 (467)
T ss_dssp CCTT-CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHT------TCEEEEECSSSCH-HHHHHHHCC------CHHHHHEE
T ss_pred ccCC-CEEEEEeeccCCCCcchhhChHHHHHHHHHHC------CCEEEEEcCccCH-HHHhhhhccccccccccccCcee
Confidence 3688 999999986 3677888888888 9998887654221 1111111 233
Q ss_pred ecCCCcCCHHhhcCcCCEEEEccCCchHHHH-HHHHHhcCCCCcEEEEecCc
Q 014834 164 EENGTLGDIYETISGSDLVLLLISDAAQADN-YEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 164 ~~~~~~~s~~Ea~~~ADIViLavpd~~~~~V-l~eI~~~lk~gaiLi~a~G~ 214 (417)
. +.+..|+++++|.|+++|.-....++ ++.+...|+...+|++.-++
T Consensus 398 ~----~~~~~~~~~~ad~~vi~t~~~~f~~~~~~~~~~~~~~~~~i~D~r~~ 445 (467)
T 2q3e_A 398 I----SKDPYEACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRV 445 (467)
T ss_dssp E----CSSHHHHHTTCSEEEECSCCGGGGGSCHHHHHHHSCSSCEEEESSCT
T ss_pred e----cCCHHHHHhCCcEEEEecCChhhhcCCHHHHHHhcCCCCEEEeCCCc
Confidence 2 34788999999999999998776542 45677777765557766554
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=92.35 E-value=0.23 Score=47.92 Aligned_cols=93 Identities=15% Similarity=0.151 Sum_probs=62.2
Q ss_pred cCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHH-HHcCceec-CCCcCCHHhhc-----CcCC
Q 014834 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-RAAGFTEE-NGTLGDIYETI-----SGSD 180 (417)
Q Consensus 109 ~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A-~~~G~~~~-~~~~~s~~Ea~-----~~AD 180 (417)
.| ++|.|+|. |.+|.+.++.++.. |.+|++..++.+ ..+.+ ++.|.... |....+..+.+ ...|
T Consensus 149 ~g-~~vlI~Ga~g~iG~~~~~~a~~~------Ga~Vi~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d 220 (336)
T 4b7c_A 149 NG-ETVVISGAAGAVGSVAGQIARLK------GCRVVGIAGGAE-KCRFLVEELGFDGAIDYKNEDLAAGLKRECPKGID 220 (336)
T ss_dssp TT-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEESSHH-HHHHHHHTTCCSEEEETTTSCHHHHHHHHCTTCEE
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEeCCHH-HHHHHHHHcCCCEEEECCCHHHHHHHHHhcCCCce
Confidence 46 89999999 99999999999988 998877766543 45555 77776320 11112233322 2479
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 014834 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 181 IViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~G 213 (417)
+||-++.. +.++.....++++-.++..+.
T Consensus 221 ~vi~~~g~----~~~~~~~~~l~~~G~iv~~G~ 249 (336)
T 4b7c_A 221 VFFDNVGG----EILDTVLTRIAFKARIVLCGA 249 (336)
T ss_dssp EEEESSCH----HHHHHHHTTEEEEEEEEECCC
T ss_pred EEEECCCc----chHHHHHHHHhhCCEEEEEee
Confidence 99988874 356666677777776665443
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.34 E-value=0.41 Score=46.48 Aligned_cols=92 Identities=17% Similarity=0.057 Sum_probs=60.5
Q ss_pred cCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec-CCC-cCCHHhhcC-----cCC
Q 014834 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGT-LGDIYETIS-----GSD 180 (417)
Q Consensus 109 ~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~-~~~-~~s~~Ea~~-----~AD 180 (417)
.| ++|.|+|. |.+|.++++.++.. |.+|++..++.+ ..+.+++.|.... |-. ..+..+.+. ..|
T Consensus 169 ~g-~~vlV~Ga~ggiG~~~~~~a~~~------Ga~V~~~~~~~~-~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D 240 (347)
T 2hcy_A 169 AG-HWVAISGAAGGLGSLAVQYAKAM------GYRVLGIDGGEG-KEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAH 240 (347)
T ss_dssp TT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEECSTT-HHHHHHHTTCCEEEETTTCSCHHHHHHHHHTSCEE
T ss_pred CC-CEEEEECCCchHHHHHHHHHHHC------CCcEEEEcCCHH-HHHHHHHcCCceEEecCccHhHHHHHHHHhCCCCC
Confidence 46 89999999 89999999999988 998887776544 3467777775310 101 123333332 479
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 181 IViLavpd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
+||.++... +.++...+.|+++-.++..
T Consensus 241 ~vi~~~g~~---~~~~~~~~~l~~~G~iv~~ 268 (347)
T 2hcy_A 241 GVINVSVSE---AAIEASTRYVRANGTTVLV 268 (347)
T ss_dssp EEEECSSCH---HHHHHHTTSEEEEEEEEEC
T ss_pred EEEECCCcH---HHHHHHHHHHhcCCEEEEE
Confidence 999888742 3455566667766555533
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=92.29 E-value=0.3 Score=47.00 Aligned_cols=92 Identities=14% Similarity=0.106 Sum_probs=60.9
Q ss_pred cCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec-CCCcCCHHhhc------CcCC
Q 014834 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (417)
Q Consensus 109 ~gmkkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~-~~~~~s~~Ea~------~~AD 180 (417)
.| ++|.|+| .|.+|.+.++.++.. |.+|++..++ ....+.+++.|.... +....+..+.+ ...|
T Consensus 140 ~g-~~VlV~Ga~g~iG~~~~~~a~~~------Ga~Vi~~~~~-~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~D 211 (325)
T 3jyn_A 140 PG-EIILFHAAAGGVGSLACQWAKAL------GAKLIGTVSS-PEKAAHAKALGAWETIDYSHEDVAKRVLELTDGKKCP 211 (325)
T ss_dssp TT-CEEEESSTTSHHHHHHHHHHHHH------TCEEEEEESS-HHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEE
T ss_pred CC-CEEEEEcCCcHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHcCCCEEEeCCCccHHHHHHHHhCCCCce
Confidence 46 8999999 899999999999998 9988776665 344667777775320 11112222222 2579
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 181 IViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
+||-++... .+....+.++++-.++..+
T Consensus 212 vvid~~g~~----~~~~~~~~l~~~G~iv~~g 239 (325)
T 3jyn_A 212 VVYDGVGQD----TWLTSLDSVAPRGLVVSFG 239 (325)
T ss_dssp EEEESSCGG----GHHHHHTTEEEEEEEEECC
T ss_pred EEEECCChH----HHHHHHHHhcCCCEEEEEe
Confidence 999888763 3445556677766655443
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=92.29 E-value=0.28 Score=45.80 Aligned_cols=90 Identities=14% Similarity=0.101 Sum_probs=53.5
Q ss_pred hccCCCEEEEEccc---chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEE
Q 014834 107 AFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 107 ~l~gmkkIgIIG~G---~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIVi 183 (417)
.|+| |++-|-|.+ -+|.++|+.|.+. |.+|++.+|+.....+.++.. .. ... .++..+-
T Consensus 3 ~l~g-K~alVTGaa~~~GIG~aiA~~la~~------Ga~Vvi~~r~~~~~~~~~~~~--~~----~~~-----~~~~~~~ 64 (256)
T 4fs3_A 3 NLEN-KTYVIMGIANKRSIAFGVAKVLDQL------GAKLVFTYRKERSRKELEKLL--EQ----LNQ-----PEAHLYQ 64 (256)
T ss_dssp CCTT-CEEEEECCCSTTCHHHHHHHHHHHT------TCEEEEEESSGGGHHHHHHHH--GG----GTC-----SSCEEEE
T ss_pred CCCC-CEEEEECCCCCchHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHH--Hh----cCC-----CcEEEEE
Confidence 4789 999999975 4999999999999 999988888744332222211 00 000 0111211
Q ss_pred EccC-CchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 184 LLIS-DAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 184 Lavp-d~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
+=+. +....++++++...+.+=.+|+..+|+
T Consensus 65 ~Dv~~~~~v~~~~~~~~~~~G~iD~lvnnAg~ 96 (256)
T 4fs3_A 65 IDVQSDEEVINGFEQIGKDVGNIDGVYHSIAF 96 (256)
T ss_dssp CCTTCHHHHHHHHHHHHHHHCCCSEEEECCCC
T ss_pred ccCCCHHHHHHHHHHHHHHhCCCCEEEecccc
Confidence 1123 344456777766655333367777775
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=92.10 E-value=0.39 Score=47.07 Aligned_cols=93 Identities=14% Similarity=0.102 Sum_probs=61.6
Q ss_pred cCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec-CCCcCCHHhhc-----CcCCE
Q 014834 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI-----SGSDL 181 (417)
Q Consensus 109 ~gmkkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~-~~~~~s~~Ea~-----~~ADI 181 (417)
.| ++|.|+| .|.+|...++-++.. |.+|++..++ ....+.+++.|.... +....+..+.+ ...|+
T Consensus 163 ~g-~~VlV~Ga~G~iG~~~~q~a~~~------Ga~Vi~~~~~-~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~g~D~ 234 (362)
T 2c0c_A 163 EG-KKVLVTAAAGGTGQFAMQLSKKA------KCHVIGTCSS-DEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGVDV 234 (362)
T ss_dssp TT-CEEEETTTTBTTHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHTTCSEEEETTTSCHHHHHHHHCTTCEEE
T ss_pred CC-CEEEEeCCCcHHHHHHHHHHHhC------CCEEEEEECC-HHHHHHHHHcCCcEEEecCChhHHHHHHHhcCCCCCE
Confidence 46 8999999 799999999999988 9988766665 344677777886420 11112333333 24799
Q ss_pred EEEccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 014834 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 182 ViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~G 213 (417)
||-++.. ..++...+.++++-.++..+.
T Consensus 235 vid~~g~----~~~~~~~~~l~~~G~iv~~g~ 262 (362)
T 2c0c_A 235 VYESVGG----AMFDLAVDALATKGRLIVIGF 262 (362)
T ss_dssp EEECSCT----HHHHHHHHHEEEEEEEEECCC
T ss_pred EEECCCH----HHHHHHHHHHhcCCEEEEEeC
Confidence 9999886 344555566666665554443
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=92.09 E-value=0.23 Score=47.89 Aligned_cols=92 Identities=15% Similarity=0.157 Sum_probs=61.3
Q ss_pred cCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec-CCCcCCHHhhc------CcCC
Q 014834 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (417)
Q Consensus 109 ~gmkkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~-~~~~~s~~Ea~------~~AD 180 (417)
.| ++|.|+| .|.+|.+.++.++.. |.+|++..++ ....+.+++.|.... +....+..+.+ ...|
T Consensus 148 ~g-~~vlV~Ga~g~iG~~~~~~a~~~------Ga~Vi~~~~~-~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~g~D 219 (334)
T 3qwb_A 148 KG-DYVLLFAAAGGVGLILNQLLKMK------GAHTIAVAST-DEKLKIAKEYGAEYLINASKEDILRQVLKFTNGKGVD 219 (334)
T ss_dssp TT-CEEEESSTTBHHHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHTTCSEEEETTTSCHHHHHHHHTTTSCEE
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHcCCcEEEeCCCchHHHHHHHHhCCCCce
Confidence 56 8999999 899999999999988 9988776665 445668888885420 11112222222 2579
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 181 IViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
+||-++... .++.....++++-.++..+
T Consensus 220 ~vid~~g~~----~~~~~~~~l~~~G~iv~~G 247 (334)
T 3qwb_A 220 ASFDSVGKD----TFEISLAALKRKGVFVSFG 247 (334)
T ss_dssp EEEECCGGG----GHHHHHHHEEEEEEEEECC
T ss_pred EEEECCChH----HHHHHHHHhccCCEEEEEc
Confidence 999998863 3444445666666655443
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=92.05 E-value=0.34 Score=48.96 Aligned_cols=89 Identities=15% Similarity=0.158 Sum_probs=55.3
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCC-cEEE-EE-ec-CChhhHHHH-------------HHcCceecCCCcCCHH
Q 014834 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSD-IVVK-VG-LR-KGSRSFAEA-------------RAAGFTEENGTLGDIY 173 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G-~~Vi-Vg-~r-~~s~s~~~A-------------~~~G~~~~~~~~~s~~ 173 (417)
.|||||| .|..|.-+.+-|.+. - +++. +. .+ ...+..... .+.-+.. .+.+
T Consensus 20 ~kVaIvGAtG~vG~ell~lL~~h------p~~el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~~v~~-----~~~~ 88 (381)
T 3hsk_A 20 KKAGVLGATGSVGQRFILLLSKH------PEFEIHALGASSRSAGKKYKDAASWKQTETLPETEQDIVVQE-----CKPE 88 (381)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTC------SSEEEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBCEE-----SSSC
T ss_pred cEEEEECCCChHHHHHHHHHHcC------CCceEEEeeccccccCCCHHHhcccccccccccccccceEEe-----Cchh
Confidence 6899999 699999999977664 3 3553 22 22 222322211 1111111 1222
Q ss_pred hhcCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 174 ETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 174 Ea~~~ADIViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
+.+.++|+||+|+|.....++.+++. +.|..|++.++-
T Consensus 89 ~~~~~~Dvvf~alp~~~s~~~~~~~~---~~G~~VIDlSa~ 126 (381)
T 3hsk_A 89 GNFLECDVVFSGLDADVAGDIEKSFV---EAGLAVVSNAKN 126 (381)
T ss_dssp TTGGGCSEEEECCCHHHHHHHHHHHH---HTTCEEEECCST
T ss_pred hhcccCCEEEECCChhHHHHHHHHHH---hCCCEEEEcCCc
Confidence 14678999999999988888877664 357778877663
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=92.04 E-value=0.38 Score=46.72 Aligned_cols=94 Identities=14% Similarity=0.199 Sum_probs=61.0
Q ss_pred cCCCEEEEE-cccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhc-----CcCCEE
Q 014834 109 NGINQIGVI-GWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-----SGSDLV 182 (417)
Q Consensus 109 ~gmkkIgII-G~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~-----~~ADIV 182 (417)
.| ++|.|+ |.|.+|.+.++-++.. |.+|++..++ +...+.+++.|....-....+..+.+ ...|+|
T Consensus 150 ~g-~~VlV~gg~G~vG~~a~qla~~~------Ga~Vi~~~~~-~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~g~Dvv 221 (346)
T 3fbg_A 150 EG-KTLLIINGAGGVGSIATQIAKAY------GLRVITTASR-NETIEWTKKMGADIVLNHKESLLNQFKTQGIELVDYV 221 (346)
T ss_dssp TT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEECCS-HHHHHHHHHHTCSEEECTTSCHHHHHHHHTCCCEEEE
T ss_pred CC-CEEEEEcCCCHHHHHHHHHHHHc------CCEEEEEeCC-HHHHHHHHhcCCcEEEECCccHHHHHHHhCCCCccEE
Confidence 68 999999 7999999999999988 9988766554 45567788888642100011222222 247999
Q ss_pred EEccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 014834 183 LLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 183 iLavpd~~~~~Vl~eI~~~lk~gaiLi~a~G 213 (417)
|-++.... .++.....++++-.++...+
T Consensus 222 ~d~~g~~~---~~~~~~~~l~~~G~iv~~~~ 249 (346)
T 3fbg_A 222 FCTFNTDM---YYDDMIQLVKPRGHIATIVA 249 (346)
T ss_dssp EESSCHHH---HHHHHHHHEEEEEEEEESSC
T ss_pred EECCCchH---HHHHHHHHhccCCEEEEECC
Confidence 99887432 33444455666665554443
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=91.96 E-value=0.34 Score=50.31 Aligned_cols=91 Identities=12% Similarity=0.217 Sum_probs=65.3
Q ss_pred hccCCCEEEEEccc----------chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhc
Q 014834 107 AFNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI 176 (417)
Q Consensus 107 ~l~gmkkIgIIG~G----------~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~ 176 (417)
.++| +||+|.|+- +-...++..|.+. |.+|.+++..-.. . .++.. +.+.++++
T Consensus 350 ~~~~-~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~------g~~V~~~DP~~~~-~-----~~~~~----~~~~~~~~ 412 (478)
T 3g79_A 350 KMDG-SKVAMLGWAFIKDSDDARNTPSEPYRDLCLKA------GASVMVHDPYVVN-Y-----PGVEI----SDNLEEVV 412 (478)
T ss_dssp CSTT-CEEEEECSSSSTTCSCCTTCTHHHHHHHHHHH------TCEEEEECSSCCC-B-----TTBCE----ESCHHHHH
T ss_pred CCCC-CEEEEEeeecCCCCcchhcCcHHHHHHHHHHC------CCEEEEECCCccc-c-----cCcce----ecCHHHHH
Confidence 4688 999999973 3467888888888 9999877654321 0 11221 35889999
Q ss_pred CcCCEEEEccCCchHHH-HHHHHHhcCC-CCcEEEEecCc
Q 014834 177 SGSDLVLLLISDAAQAD-NYEKIFSCMK-PNSILGLSHGF 214 (417)
Q Consensus 177 ~~ADIViLavpd~~~~~-Vl~eI~~~lk-~gaiLi~a~G~ 214 (417)
++||+|+++|.-....+ -++.+...|+ +..+|++.-++
T Consensus 413 ~~ad~vvi~t~~~~f~~~d~~~~~~~~~~~~~~i~D~rn~ 452 (478)
T 3g79_A 413 RNADAIVVLAGHSAYSSLKADWAKKVSAKANPVIIDGRNV 452 (478)
T ss_dssp TTCSEEEECSCCHHHHSCCHHHHHHHHCCSSCEEEESSSC
T ss_pred hcCCEEEEecCCHHHHhhhHHHHHHHhccCCCEEEECCCC
Confidence 99999999999777654 2456777777 36788887765
|
| >1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A | Back alignment and structure |
|---|
Probab=91.93 E-value=0.15 Score=52.25 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=31.8
Q ss_pred hh-ccCCCEEEEEcccchHHHHHHHHHh-hhhhhcCCcEEEEEecC
Q 014834 106 DA-FNGINQIGVIGWGSQGPAQAQNLRD-SLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 106 ~~-l~gmkkIgIIG~G~mG~AiA~~Lr~-s~~~~~~G~~ViVg~r~ 149 (417)
.. |+| ++|+|+|+|++|..+|+.|+. . |.+|+...++
T Consensus 207 ~~~l~g-ktvgI~G~G~VG~~vA~~l~~~~------G~kVv~~sD~ 245 (419)
T 1gtm_A 207 WDTLKG-KTIAIQGYGNAGYYLAKIMSEDF------GMKVVAVSDS 245 (419)
T ss_dssp CSCSTT-CEEEEECCSHHHHHHHHHHHHTT------CCEEEEEECS
T ss_pred CcccCC-CEEEEEcCCHHHHHHHHHHHHhc------CCEEEEEeCC
Confidence 44 899 999999999999999999998 7 9988755454
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=91.93 E-value=0.32 Score=46.66 Aligned_cols=92 Identities=17% Similarity=0.158 Sum_probs=64.2
Q ss_pred ccCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCcee-cCCCcCC-HHhhcCcCCEEEE
Q 014834 108 FNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE-ENGTLGD-IYETISGSDLVLL 184 (417)
Q Consensus 108 l~gmkkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~-~~~~~~s-~~Ea~~~ADIViL 184 (417)
-.| .+|.|+| .|.+|...++-++.. |.+|++..+ +...+.+++.|... .+....+ ..+.++..|+||-
T Consensus 151 ~~g-~~vlV~Ga~G~vG~~a~q~a~~~------Ga~vi~~~~--~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d 221 (321)
T 3tqh_A 151 KQG-DVVLIHAGAGGVGHLAIQLAKQK------GTTVITTAS--KRNHAFLKALGAEQCINYHEEDFLLAISTPVDAVID 221 (321)
T ss_dssp CTT-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEEC--HHHHHHHHHHTCSEEEETTTSCHHHHCCSCEEEEEE
T ss_pred CCC-CEEEEEcCCcHHHHHHHHHHHHc------CCEEEEEec--cchHHHHHHcCCCEEEeCCCcchhhhhccCCCEEEE
Confidence 356 8999997 999999999999988 988766543 23377888888642 1111223 5566778999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
++..... +.....++++-.++..+
T Consensus 222 ~~g~~~~----~~~~~~l~~~G~iv~~g 245 (321)
T 3tqh_A 222 LVGGDVG----IQSIDCLKETGCIVSVP 245 (321)
T ss_dssp SSCHHHH----HHHGGGEEEEEEEEECC
T ss_pred CCCcHHH----HHHHHhccCCCEEEEeC
Confidence 9885432 44556777776665444
|
| >4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* | Back alignment and structure |
|---|
Probab=91.92 E-value=0.16 Score=49.59 Aligned_cols=33 Identities=18% Similarity=0.158 Sum_probs=29.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~ 149 (417)
||||+|||-|..|..++..+++. |+++++.+..
T Consensus 1 MK~I~ilGgg~~g~~~~~~Ak~~------G~~vv~vd~~ 33 (363)
T 4ffl_A 1 MKTICLVGGKLQGFEAAYLSKKA------GMKVVLVDKN 33 (363)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT------TCEEEEEESC
T ss_pred CCEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCC
Confidence 79999999999999999999998 9998776543
|
| >3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.89 E-value=0.42 Score=48.71 Aligned_cols=71 Identities=15% Similarity=0.133 Sum_probs=50.2
Q ss_pred hccCCCEEEEEcc-----c---chHHHHHHHHHhhhhhhcCCcEEEEEecC----ChhhHH----HHHHcCceecCCCcC
Q 014834 107 AFNGINQIGVIGW-----G---SQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFA----EARAAGFTEENGTLG 170 (417)
Q Consensus 107 ~l~gmkkIgIIG~-----G---~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~----~s~s~~----~A~~~G~~~~~~~~~ 170 (417)
.|+| +||+|||. | ++..+++..+..- |++|.+.... .+...+ .+.+.|.... .+.
T Consensus 188 ~l~G-lkva~vgd~~~~~G~~nnVa~Sli~~~~~l------G~~v~~~~P~~~~~~~~~~~~a~~~a~~~G~~i~--~~~ 258 (399)
T 3q98_A 188 NLKG-KKIAMTWAYSPSYGKPLSVPQGIIGLMTRF------GMDVTLAHPEGYDLIPDVVEVAKNNAKASGGSFR--QVT 258 (399)
T ss_dssp GGTT-CEEEEECCCCSSCCCCTHHHHHHHHHHGGG------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEE--EES
T ss_pred ccCC-CEEEEEEecccccCcchHHHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEE--EEc
Confidence 4678 89999984 4 7889999998887 9998776543 222222 2345564310 157
Q ss_pred CHHhhcCcCCEEEEcc
Q 014834 171 DIYETISGSDLVLLLI 186 (417)
Q Consensus 171 s~~Ea~~~ADIViLav 186 (417)
+++|++++||+|..-+
T Consensus 259 d~~eav~~aDvVytd~ 274 (399)
T 3q98_A 259 SMEEAFKDADIVYPKS 274 (399)
T ss_dssp CHHHHHTTCSEEEECC
T ss_pred CHHHHhCCCCEEEecC
Confidence 8999999999999865
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=91.84 E-value=0.34 Score=43.64 Aligned_cols=74 Identities=15% Similarity=0.197 Sum_probs=49.2
Q ss_pred ccCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhHHHHHHcCceecCCCc---CCHHhhcCcCCE
Q 014834 108 FNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTL---GDIYETISGSDL 181 (417)
Q Consensus 108 l~gmkkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~~~A~~~G~~~~~~~~---~s~~Ea~~~ADI 181 (417)
+++ |+|.|.| .|.+|.++++.|.+. |. +|++..|+.++..+.. ..++......+ .+.+++++..|+
T Consensus 16 m~~-~~vlVtGasg~iG~~l~~~L~~~------G~~~~V~~~~r~~~~~~~~~-~~~~~~~~~D~~d~~~~~~~~~~~d~ 87 (242)
T 2bka_A 16 MQN-KSVFILGASGETGRVLLKEILEQ------GLFSKVTLIGRRKLTFDEEA-YKNVNQEVVDFEKLDDYASAFQGHDV 87 (242)
T ss_dssp HTC-CEEEEECTTSHHHHHHHHHHHHH------TCCSEEEEEESSCCCCCSGG-GGGCEEEECCGGGGGGGGGGGSSCSE
T ss_pred hcC-CeEEEECCCcHHHHHHHHHHHcC------CCCCEEEEEEcCCCCccccc-cCCceEEecCcCCHHHHHHHhcCCCE
Confidence 567 8999999 699999999999999 98 9988877643221111 11221100111 234567788999
Q ss_pred EEEccCCc
Q 014834 182 VLLLISDA 189 (417)
Q Consensus 182 ViLavpd~ 189 (417)
||.+....
T Consensus 88 vi~~ag~~ 95 (242)
T 2bka_A 88 GFCCLGTT 95 (242)
T ss_dssp EEECCCCC
T ss_pred EEECCCcc
Confidence 99987643
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=91.84 E-value=0.41 Score=46.02 Aligned_cols=92 Identities=17% Similarity=0.155 Sum_probs=59.9
Q ss_pred cCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCcee-cCCCc-CCHHhhcC-----cCC
Q 014834 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE-ENGTL-GDIYETIS-----GSD 180 (417)
Q Consensus 109 ~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~-~~~~~-~s~~Ea~~-----~AD 180 (417)
.| ++|.|+|. |.+|.+.++.++.. |.+|++..++. ...+.+++.|... .|-.. .+..+.+. ..|
T Consensus 145 ~g-~~vlV~Ga~ggiG~~~~~~~~~~------G~~V~~~~~~~-~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d 216 (333)
T 1v3u_A 145 GG-ETVLVSAAAGAVGSVVGQIAKLK------GCKVVGAAGSD-EKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYD 216 (333)
T ss_dssp SS-CEEEEESTTBHHHHHHHHHHHHT------TCEEEEEESSH-HHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEE
T ss_pred CC-CEEEEecCCCcHHHHHHHHHHHC------CCEEEEEeCCH-HHHHHHHhcCCcEEEecCCHHHHHHHHHHHhCCCCe
Confidence 46 89999998 99999999999998 99887776653 3455667777521 01111 23333322 479
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 181 IViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
+||.++... .++.....++++-.++..+
T Consensus 217 ~vi~~~g~~----~~~~~~~~l~~~G~~v~~g 244 (333)
T 1v3u_A 217 CYFDNVGGE----FLNTVLSQMKDFGKIAICG 244 (333)
T ss_dssp EEEESSCHH----HHHHHHTTEEEEEEEEECC
T ss_pred EEEECCChH----HHHHHHHHHhcCCEEEEEe
Confidence 998888742 3555566677766555443
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=91.78 E-value=0.32 Score=46.33 Aligned_cols=69 Identities=29% Similarity=0.220 Sum_probs=44.9
Q ss_pred hhhccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCC---HHhhcCcCC
Q 014834 105 PDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSD 180 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s---~~Ea~~~AD 180 (417)
...+++ |+|.|.|. |-+|.++++.|.+. |++|++..|.... .++......+.+ ..++++++|
T Consensus 14 ~~~~~~-~~vlVtGatG~iG~~l~~~L~~~------G~~V~~~~r~~~~-------~~~~~~~~Dl~d~~~~~~~~~~~d 79 (347)
T 4id9_A 14 LVPRGS-HMILVTGSAGRVGRAVVAALRTQ------GRTVRGFDLRPSG-------TGGEEVVGSLEDGQALSDAIMGVS 79 (347)
T ss_dssp --------CEEEETTTSHHHHHHHHHHHHT------TCCEEEEESSCCS-------SCCSEEESCTTCHHHHHHHHTTCS
T ss_pred ccccCC-CEEEEECCCChHHHHHHHHHHhC------CCEEEEEeCCCCC-------CCccEEecCcCCHHHHHHHHhCCC
Confidence 356777 99999997 99999999999999 9999877776433 222211111223 456788999
Q ss_pred EEEEccC
Q 014834 181 LVLLLIS 187 (417)
Q Consensus 181 IViLavp 187 (417)
+||.+..
T Consensus 80 ~vih~A~ 86 (347)
T 4id9_A 80 AVLHLGA 86 (347)
T ss_dssp EEEECCC
T ss_pred EEEECCc
Confidence 9998754
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=91.71 E-value=0.82 Score=47.11 Aligned_cols=97 Identities=15% Similarity=0.190 Sum_probs=66.4
Q ss_pred hccCCCEEEEEcc----------cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhh--HHHHHH-cC-------ceecC
Q 014834 107 AFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS--FAEARA-AG-------FTEEN 166 (417)
Q Consensus 107 ~l~gmkkIgIIG~----------G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s--~~~A~~-~G-------~~~~~ 166 (417)
.++| ++|+|.|+ .+-...++..|.+. |.+|.+++..-... .....+ .+ +..
T Consensus 332 ~~~~-~~v~vlGlafK~~~dd~R~Spa~~i~~~L~~~------g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~-- 402 (481)
T 2o3j_A 332 TVTD-KKIAIFGFAFKKNTGDTRESSAIHVIKHLMEE------HAKLSVYDPKVQKSQMLNDLASVTSAQDVERLITV-- 402 (481)
T ss_dssp CCTT-CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHT------TCEEEEECSSSCHHHHHHHHHHHSCHHHHHHHEEE--
T ss_pred ccCC-CeEEEEeeeeCCCCCccccChHHHHHHHHHHC------CCEEEEECCCCCchhhHHHHHhhhccccccCceee--
Confidence 4688 99999997 34667778888887 99988776542211 112221 21 232
Q ss_pred CCcCCHHhhcCcCCEEEEccCCchHHHH-HHHHHhcCCCCcEEEEecCc
Q 014834 167 GTLGDIYETISGSDLVLLLISDAAQADN-YEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 167 ~~~~s~~Ea~~~ADIViLavpd~~~~~V-l~eI~~~lk~gaiLi~a~G~ 214 (417)
+.+..|+++++|.|+++|.-.....+ ++.+...|+...+|++.-++
T Consensus 403 --~~~~~~~~~~ad~~vi~t~~~~f~~~~~~~~~~~~~~~~~i~D~r~~ 449 (481)
T 2o3j_A 403 --ESDPYAAARGAHAIVVLTEWDEFVELNYSQIHNDMQHPAAIFDGRLI 449 (481)
T ss_dssp --ESSHHHHHTTCSEEEECSCCGGGTTSCHHHHHHHSCSSCEEEESSSC
T ss_pred --cCCHHHHHcCCCEEEEcCCcHHhhccCHHHHHHhcCCCCEEEECCCC
Confidence 35778899999999999998776542 55677778776677777664
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=91.69 E-value=1.1 Score=42.51 Aligned_cols=90 Identities=17% Similarity=0.218 Sum_probs=56.1
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHc----Cc----eecCCCcCCHHhhcCcCC
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GF----TEENGTLGDIYETISGSD 180 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~----G~----~~~~~~~~s~~Ea~~~AD 180 (417)
.| .+|--||||. |.-...-.+.. |.+|+ +.+..+...+.+++. |. ... ..+..+.-...|
T Consensus 90 ~~-~~vLDiGcG~-G~~~~~la~~~------~~~v~-gvD~s~~~~~~a~~~~~~~~~~~~v~~~---~~d~~~~~~~fD 157 (318)
T 2fk8_A 90 PG-MTLLDIGCGW-GTTMRRAVERF------DVNVI-GLTLSKNQHARCEQVLASIDTNRSRQVL---LQGWEDFAEPVD 157 (318)
T ss_dssp TT-CEEEEESCTT-SHHHHHHHHHH------CCEEE-EEESCHHHHHHHHHHHHTSCCSSCEEEE---ESCGGGCCCCCS
T ss_pred Cc-CEEEEEcccc-hHHHHHHHHHC------CCEEE-EEECCHHHHHHHHHHHHhcCCCCceEEE---ECChHHCCCCcC
Confidence 46 7999999998 43322223333 55664 555545445555442 32 211 234444436789
Q ss_pred EEEEc-----cCCchHHHHHHHHHhcCCCCcEEEE
Q 014834 181 LVLLL-----ISDAAQADNYEKIFSCMKPNSILGL 210 (417)
Q Consensus 181 IViLa-----vpd~~~~~Vl~eI~~~lk~gaiLi~ 210 (417)
+|+.. +++.....+++++...|+||-.+++
T Consensus 158 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 192 (318)
T 2fk8_A 158 RIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTV 192 (318)
T ss_dssp EEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEE
T ss_pred EEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 99987 6666677899999999999886653
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=91.66 E-value=0.27 Score=47.85 Aligned_cols=90 Identities=16% Similarity=0.177 Sum_probs=59.6
Q ss_pred cCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec-CCCcCCHHhhc------CcCC
Q 014834 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (417)
Q Consensus 109 ~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~-~~~~~s~~Ea~------~~AD 180 (417)
.| ++|.|+|. |.+|.+.++.++.. |.+|++..++. ...+.+++.|.... +.. .+..+.+ ...|
T Consensus 159 ~g-~~VlV~Gasg~iG~~~~~~a~~~------Ga~Vi~~~~~~-~~~~~~~~~ga~~v~~~~-~~~~~~v~~~~~~~g~D 229 (342)
T 4eye_A 159 AG-ETVLVLGAAGGIGTAAIQIAKGM------GAKVIAVVNRT-AATEFVKSVGADIVLPLE-EGWAKAVREATGGAGVD 229 (342)
T ss_dssp TT-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEESSG-GGHHHHHHHTCSEEEESS-TTHHHHHHHHTTTSCEE
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHc------CCEEEEEeCCH-HHHHHHHhcCCcEEecCc-hhHHHHHHHHhCCCCce
Confidence 46 89999998 99999999999988 99887766654 44677777776421 111 2333222 2589
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 181 IViLavpd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
+||-++... .++.....++++-.++..
T Consensus 230 vvid~~g~~----~~~~~~~~l~~~G~iv~~ 256 (342)
T 4eye_A 230 MVVDPIGGP----AFDDAVRTLASEGRLLVV 256 (342)
T ss_dssp EEEESCC------CHHHHHHTEEEEEEEEEC
T ss_pred EEEECCchh----HHHHHHHhhcCCCEEEEE
Confidence 999998864 344455566666655544
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=91.65 E-value=1.2 Score=39.23 Aligned_cols=92 Identities=14% Similarity=0.052 Sum_probs=56.7
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH----cCc---eecCCCcCCHHh---hcCc
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGF---TEENGTLGDIYE---TISG 178 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~----~G~---~~~~~~~~s~~E---a~~~ 178 (417)
.| .+|.-||+|. |. ++..|.+. +.+.+|+ +.+.++...+.+++ .|+ ... ..+..+ ....
T Consensus 40 ~~-~~vLDiG~G~-G~-~~~~la~~----~~~~~v~-~vD~s~~~~~~a~~~~~~~~~~~v~~~---~~d~~~~~~~~~~ 108 (204)
T 3e05_A 40 DD-LVMWDIGAGS-AS-VSIEASNL----MPNGRIF-ALERNPQYLGFIRDNLKKFVARNVTLV---EAFAPEGLDDLPD 108 (204)
T ss_dssp TT-CEEEEETCTT-CH-HHHHHHHH----CTTSEEE-EEECCHHHHHHHHHHHHHHTCTTEEEE---ECCTTTTCTTSCC
T ss_pred CC-CEEEEECCCC-CH-HHHHHHHH----CCCCEEE-EEeCCHHHHHHHHHHHHHhCCCcEEEE---eCChhhhhhcCCC
Confidence 46 8999999997 33 44444444 0024664 55554544555543 232 211 122222 2256
Q ss_pred CCEEEEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 179 ADIViLavpd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
.|+|++..+.....++++++...|+||-.+++.
T Consensus 109 ~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 141 (204)
T 3e05_A 109 PDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLN 141 (204)
T ss_dssp CSEEEESCCTTCHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCEEEECCCCcCHHHHHHHHHHhcCCCeEEEEE
Confidence 899999887777778999999999999876644
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=91.61 E-value=0.25 Score=48.20 Aligned_cols=76 Identities=16% Similarity=0.093 Sum_probs=49.7
Q ss_pred hhccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCC-cEEEEEecCChhhHHHHH-HcCceecCCCcCC---HHhhcCcC
Q 014834 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEAR-AAGFTEENGTLGD---IYETISGS 179 (417)
Q Consensus 106 ~~l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G-~~ViVg~r~~s~s~~~A~-~~G~~~~~~~~~s---~~Ea~~~A 179 (417)
..+++ |+|.|.|. |.+|.++++.|.+. | ++|++..|......+... ..++....+.+.+ +.++++++
T Consensus 28 ~~~~~-~~ilVtGatG~iG~~l~~~L~~~------g~~~V~~~~r~~~~~~~~l~~~~~v~~~~~Dl~d~~~l~~~~~~~ 100 (377)
T 2q1s_A 28 SKLAN-TNVMVVGGAGFVGSNLVKRLLEL------GVNQVHVVDNLLSAEKINVPDHPAVRFSETSITDDALLASLQDEY 100 (377)
T ss_dssp GGGTT-CEEEEETTTSHHHHHHHHHHHHT------TCSEEEEECCCTTCCGGGSCCCTTEEEECSCTTCHHHHHHCCSCC
T ss_pred HHhCC-CEEEEECCccHHHHHHHHHHHHc------CCceEEEEECCCCCchhhccCCCceEEEECCCCCHHHHHHHhhCC
Confidence 34677 89999995 99999999999998 9 998877765332211110 1222211112233 44677899
Q ss_pred CEEEEccCC
Q 014834 180 DLVLLLISD 188 (417)
Q Consensus 180 DIViLavpd 188 (417)
|+||.+...
T Consensus 101 d~Vih~A~~ 109 (377)
T 2q1s_A 101 DYVFHLATY 109 (377)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCCc
Confidence 999988653
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=91.58 E-value=0.22 Score=48.48 Aligned_cols=92 Identities=25% Similarity=0.266 Sum_probs=59.3
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcCceec-CCCcCCHHhhc------CcCC
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G~~~~-~~~~~s~~Ea~------~~AD 180 (417)
.| .+|.|+|.|.+|...++-++.. |. +|++..+ .+...+.+++.|.... +....+..+.+ ...|
T Consensus 166 ~g-~~VlV~GaG~vG~~a~qla~~~------Ga~~Vi~~~~-~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~g~D 237 (352)
T 3fpc_A 166 LG-DTVCVIGIGPVGLMSVAGANHL------GAGRIFAVGS-RKHCCDIALEYGATDIINYKNGDIVEQILKATDGKGVD 237 (352)
T ss_dssp TT-CCEEEECCSHHHHHHHHHHHTT------TCSSEEEECC-CHHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTCCEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCcEEEEECC-CHHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCCCCC
Confidence 46 8999999999999999999988 88 6765544 3455788888886421 11111222222 1489
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 181 IViLavpd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
+||-++.... .++.....++++-.++..
T Consensus 238 ~v~d~~g~~~---~~~~~~~~l~~~G~~v~~ 265 (352)
T 3fpc_A 238 KVVIAGGDVH---TFAQAVKMIKPGSDIGNV 265 (352)
T ss_dssp EEEECSSCTT---HHHHHHHHEEEEEEEEEC
T ss_pred EEEECCCChH---HHHHHHHHHhcCCEEEEe
Confidence 9999988632 233344456666655544
|
| >3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ... | Back alignment and structure |
|---|
Probab=91.57 E-value=0.51 Score=46.47 Aligned_cols=72 Identities=11% Similarity=0.072 Sum_probs=51.6
Q ss_pred hccCCCEEEEEcc---cchHHHHHHHHHhhhhhhcCCcEEEEEecC----ChhhHHHHHHcCceecCCCcCCHHhhcCcC
Q 014834 107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEARAAGFTEENGTLGDIYETISGS 179 (417)
Q Consensus 107 ~l~gmkkIgIIG~---G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~----~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~A 179 (417)
.|+| .||++||= +++..+++..+... .|++|.+.... +....+.+++.|.... .+.+++|++++|
T Consensus 151 ~l~g-l~va~vGD~~~~rva~Sl~~~~~~~-----~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~--~~~d~~eav~~a 222 (310)
T 3csu_A 151 RLDN-LHVAMVGDLKYGRTVHSLTQALAKF-----DGNRFYFIAPDALAMPQYILDMLDEKGIAWS--LHSSIEEVMAEV 222 (310)
T ss_dssp CSSS-CEEEEESCTTTCHHHHHHHHHHHTS-----SSCEEEEECCGGGCCCHHHHHHHHHTTCCEE--ECSCGGGTTTTC
T ss_pred CcCC-cEEEEECCCCCCchHHHHHHHHHhC-----CCCEEEEECCcccccCHHHHHHHHHcCCeEE--EEcCHHHHhcCC
Confidence 4788 89999998 48999999888653 17788776543 2223456667775320 157899999999
Q ss_pred CEEEEcc
Q 014834 180 DLVLLLI 186 (417)
Q Consensus 180 DIViLav 186 (417)
|+|+...
T Consensus 223 Dvvyt~~ 229 (310)
T 3csu_A 223 DILYMTR 229 (310)
T ss_dssp SEEEECC
T ss_pred CEEEECC
Confidence 9999865
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=91.49 E-value=0.74 Score=45.90 Aligned_cols=37 Identities=14% Similarity=0.151 Sum_probs=31.6
Q ss_pred hhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEec
Q 014834 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r 148 (417)
.+.|++ +||.|||+|-.|.+++++|... |+ ++.+.++
T Consensus 29 ~~kL~~-~~VlIvGaGGlGs~va~~La~a------GVg~ItlvD~ 66 (340)
T 3rui_A 29 LDIIKN-TKVLLLGAGTLGCYVSRALIAW------GVRKITFVDN 66 (340)
T ss_dssp HHHHHT-CEEEEECCSHHHHHHHHHHHHT------TCCEEEEECC
T ss_pred HHHHhC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEecC
Confidence 467889 9999999999999999999998 87 5655543
|
| >3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A | Back alignment and structure |
|---|
Probab=91.45 E-value=0.43 Score=49.22 Aligned_cols=36 Identities=25% Similarity=0.392 Sum_probs=30.7
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEE-EEec
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLR 148 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vi-Vg~r 148 (417)
..++| ++|+|.|+|++|...|+.|.+. |..|+ |.+.
T Consensus 231 ~~l~g-~~vaVqGfGnVG~~~a~~L~e~------GakvVavsD~ 267 (440)
T 3aog_A 231 LQVEG-ARVAIQGFGNVGNAAARAFHDH------GARVVAVQDH 267 (440)
T ss_dssp CCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEECS
T ss_pred CCccC-CEEEEeccCHHHHHHHHHHHHC------CCEEEEEEcC
Confidence 36889 9999999999999999999998 88776 4443
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=91.43 E-value=1.1 Score=40.53 Aligned_cols=47 Identities=21% Similarity=0.167 Sum_probs=37.8
Q ss_pred cccccchhhccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChh
Q 014834 99 DLFKLLPDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR 152 (417)
Q Consensus 99 ~~f~~~~~~l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~ 152 (417)
|.+...+..++| |++-|.|. |-+|.++++.|.+. |.+|++..|+..+
T Consensus 3 ~~~~~~~~~l~~-k~vlITGas~gIG~~ia~~l~~~------G~~V~~~~r~~~~ 50 (247)
T 3i1j_A 3 FDYSAHPELLKG-RVILVTGAARGIGAAAARAYAAH------GASVVLLGRTEAS 50 (247)
T ss_dssp CCCCCCTTTTTT-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEESCHHH
T ss_pred CCCCCCCccCCC-CEEEEeCCCChHHHHHHHHHHHC------CCEEEEEecCHHH
Confidence 344545677899 99999996 68999999999999 9999888776443
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=91.40 E-value=0.2 Score=47.87 Aligned_cols=76 Identities=13% Similarity=0.051 Sum_probs=50.7
Q ss_pred hhhccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH-cCceecCCCcCC---HHhhcC--
Q 014834 105 PDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLGD---IYETIS-- 177 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~-~G~~~~~~~~~s---~~Ea~~-- 177 (417)
++.++| |+|.|.|. |-+|.++++.|.+. |++|++..|......+...+ .++......+.+ +.++++
T Consensus 15 ~~~~~~-~~vlVTGasG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~ 87 (330)
T 2pzm_A 15 VPRGSH-MRILITGGAGCLGSNLIEHWLPQ------GHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSF 87 (330)
T ss_dssp CSTTTC-CEEEEETTTSHHHHHHHHHHGGG------TCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHH
T ss_pred cccCCC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhc
Confidence 678899 89999997 99999999999999 99998877753321110011 122211111233 445677
Q ss_pred cCCEEEEccC
Q 014834 178 GSDLVLLLIS 187 (417)
Q Consensus 178 ~ADIViLavp 187 (417)
..|+||.+..
T Consensus 88 ~~D~vih~A~ 97 (330)
T 2pzm_A 88 KPTHVVHSAA 97 (330)
T ss_dssp CCSEEEECCC
T ss_pred CCCEEEECCc
Confidence 8999999864
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=91.37 E-value=0.25 Score=47.97 Aligned_cols=68 Identities=12% Similarity=0.090 Sum_probs=43.1
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc-------EEEEEecCCh--hhHHHHHH--c---CceecC-CCcCCHHhh
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGS--RSFAEARA--A---GFTEEN-GTLGDIYET 175 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~-------~ViVg~r~~s--~s~~~A~~--~---G~~~~~-~~~~s~~Ea 175 (417)
+||.|+|. |.+|.+++..|... |+ +|++.++... +....+.+ . .+.. | ....+..++
T Consensus 5 mkVlVtGaaGfIG~~l~~~L~~~------g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~~-di~~~~~~~~a 77 (327)
T 1y7t_A 5 VRVAVTGAAGQIGYSLLFRIAAG------EMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLA-GLEATDDPKVA 77 (327)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTT------TTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEE-EEEEESCHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccccC-CeEeccChHHH
Confidence 68999996 99999999999987 75 6766555321 11111111 1 1110 0 002456788
Q ss_pred cCcCCEEEEcc
Q 014834 176 ISGSDLVLLLI 186 (417)
Q Consensus 176 ~~~ADIViLav 186 (417)
++++|+||.+.
T Consensus 78 ~~~~D~Vih~A 88 (327)
T 1y7t_A 78 FKDADYALLVG 88 (327)
T ss_dssp TTTCSEEEECC
T ss_pred hCCCCEEEECC
Confidence 99999999873
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=91.33 E-value=0.39 Score=46.48 Aligned_cols=92 Identities=17% Similarity=0.129 Sum_probs=60.8
Q ss_pred cCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec-CCCcCCHHhhc------CcCC
Q 014834 109 NGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (417)
Q Consensus 109 ~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~-~~~~~s~~Ea~------~~AD 180 (417)
.| ++|.|+|.| .+|.+.++-++.. |.+|++..++.+ ..+.+++.|.... +....+..+.+ ...|
T Consensus 144 ~g-~~VlV~Ga~g~iG~~~~~~a~~~------Ga~Vi~~~~~~~-~~~~~~~lga~~~~~~~~~~~~~~~~~~~~~~g~D 215 (340)
T 3gms_A 144 RN-DVLLVNACGSAIGHLFAQLSQIL------NFRLIAVTRNNK-HTEELLRLGAAYVIDTSTAPLYETVMELTNGIGAD 215 (340)
T ss_dssp TT-CEEEESSTTSHHHHHHHHHHHHH------TCEEEEEESSST-THHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEE
T ss_pred CC-CEEEEeCCccHHHHHHHHHHHHc------CCEEEEEeCCHH-HHHHHHhCCCcEEEeCCcccHHHHHHHHhCCCCCc
Confidence 56 899999998 8999999999988 998877776544 4677777776420 11112332222 2589
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 181 IViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
+||-++......+. ...++++-.++..+
T Consensus 216 vvid~~g~~~~~~~----~~~l~~~G~iv~~G 243 (340)
T 3gms_A 216 AAIDSIGGPDGNEL----AFSLRPNGHFLTIG 243 (340)
T ss_dssp EEEESSCHHHHHHH----HHTEEEEEEEEECC
T ss_pred EEEECCCChhHHHH----HHHhcCCCEEEEEe
Confidence 99999886544333 35667766655443
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=91.30 E-value=0.27 Score=46.33 Aligned_cols=66 Identities=17% Similarity=0.184 Sum_probs=45.5
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCc--CCHHhhcCcCCEEEEccC
Q 014834 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL--GDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~--~s~~Ea~~~ADIViLavp 187 (417)
|+|.|.| .|.+|..+++.|.+. |++|++..|.. ...+ .. ++....+.+ .++.++++++|+||.+..
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~------g~~V~~~~r~~-~~~~-~~--~~~~~~~Dl~~~~~~~~~~~~d~Vih~a~ 71 (311)
T 3m2p_A 3 LKIAVTGGTGFLGQYVVESIKND------GNTPIILTRSI-GNKA-IN--DYEYRVSDYTLEDLINQLNDVDAVVHLAA 71 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCC-C--------CCEEEECCCCHHHHHHHTTTCSEEEECCC
T ss_pred CEEEEECCCcHHHHHHHHHHHhC------CCEEEEEeCCC-Cccc-CC--ceEEEEccccHHHHHHhhcCCCEEEEccc
Confidence 7999999 699999999999999 99998877762 2222 11 433211111 234567889999998864
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=91.26 E-value=0.36 Score=47.10 Aligned_cols=92 Identities=18% Similarity=0.215 Sum_probs=60.4
Q ss_pred cCCCEEEEE-cccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec-CCCcCCHHhhc-----CcCCE
Q 014834 109 NGINQIGVI-GWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI-----SGSDL 181 (417)
Q Consensus 109 ~gmkkIgII-G~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~-~~~~~s~~Ea~-----~~ADI 181 (417)
.| ++|.|+ |.|.+|.+.++.++.. |.+|++..++. ...+.+++.|.... +....+..+.+ ...|+
T Consensus 167 ~g-~~VlV~Gg~g~iG~~~~~~a~~~------Ga~Vi~~~~~~-~~~~~~~~lGa~~~~~~~~~~~~~~~~~~~~~g~Dv 238 (353)
T 4dup_A 167 EG-ESVLIHGGTSGIGTTAIQLARAF------GAEVYATAGST-GKCEACERLGAKRGINYRSEDFAAVIKAETGQGVDI 238 (353)
T ss_dssp TT-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEESSH-HHHHHHHHHTCSEEEETTTSCHHHHHHHHHSSCEEE
T ss_pred CC-CEEEEEcCCCHHHHHHHHHHHHc------CCEEEEEeCCH-HHHHHHHhcCCCEEEeCCchHHHHHHHHHhCCCceE
Confidence 46 899999 6899999999999988 99887776653 44677777775420 11112333333 25899
Q ss_pred EEEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 182 ViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
||-++.... ++.....++++-.++..+
T Consensus 239 vid~~g~~~----~~~~~~~l~~~G~iv~~g 265 (353)
T 4dup_A 239 ILDMIGAAY----FERNIASLAKDGCLSIIA 265 (353)
T ss_dssp EEESCCGGG----HHHHHHTEEEEEEEEECC
T ss_pred EEECCCHHH----HHHHHHHhccCCEEEEEE
Confidence 999988653 344445666666555443
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=91.22 E-value=1 Score=43.86 Aligned_cols=71 Identities=20% Similarity=0.259 Sum_probs=47.4
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhH-HHHHH-cCceecCCC-cCC---HHhhcCcCCEEEE
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARA-AGFTEENGT-LGD---IYETISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~-~~A~~-~G~~~~~~~-~~s---~~Ea~~~ADIViL 184 (417)
|+|.|.|. |.+|.++++.|.+. |++|++..|+.++.. +.... .++....+. +.+ +.++++++|+||.
T Consensus 6 ~~ilVtGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~ 79 (352)
T 1xgk_A 6 KTIAVVGATGRQGASLIRVAAAV------GHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFI 79 (352)
T ss_dssp CCEEEESTTSHHHHHHHHHHHHT------TCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEE
Confidence 78999995 99999999999998 999887777654321 11111 133221112 223 4567889999997
Q ss_pred ccCC
Q 014834 185 LISD 188 (417)
Q Consensus 185 avpd 188 (417)
+...
T Consensus 80 ~a~~ 83 (352)
T 1xgk_A 80 NTTS 83 (352)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 7653
|
| >3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense} | Back alignment and structure |
|---|
Probab=91.22 E-value=0.36 Score=46.74 Aligned_cols=84 Identities=13% Similarity=0.172 Sum_probs=52.9
Q ss_pred ccccccchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcC
Q 014834 98 RDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS 177 (417)
Q Consensus 98 ~~~f~~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~ 177 (417)
.++|.......+| +||++||+- .....+++. +.++.|..++.. .|..+ ....+++++
T Consensus 129 ~d~~~~~~~~~~g-~kV~vIG~f----P~i~~~~~~------~~~l~V~E~~p~--------~g~~p----~~~~~~~lp 185 (270)
T 3l5o_A 129 NDPFIMSQNEVKG-KKVGVVGHF----PHLESLLEP------ICDLSILEWSPE--------EGDYP----LPASEFILP 185 (270)
T ss_dssp CCHHHHTTTTTTT-SEEEEESCC----TTHHHHHTT------TSEEEEEESSCC--------TTCEE----GGGHHHHGG
T ss_pred cCchhhhhcccCC-CEEEEECCc----hhHHHHHhc------CCCEEEEECCCC--------CCCCC----hhHHHHhhc
Confidence 4456555677889 999999974 445667777 778888887632 34332 234567899
Q ss_pred cCCEEEEccCCchHHHHHHHHHhcCCCC
Q 014834 178 GSDLVLLLISDAAQADNYEKIFSCMKPN 205 (417)
Q Consensus 178 ~ADIViLavpd~~~~~Vl~eI~~~lk~g 205 (417)
+||+||+.-. ......++.|..+.++.
T Consensus 186 ~~D~viiTgs-tlvN~Tl~~lL~~~~~a 212 (270)
T 3l5o_A 186 ECDYVYITCA-SVVDKTLPRLLELSRNA 212 (270)
T ss_dssp GCSEEEEETH-HHHHTCHHHHHHHTTTS
T ss_pred cCCEEEEEee-hhhcCCHHHHHhhCCCC
Confidence 9999987532 22223444455444443
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=91.03 E-value=0.52 Score=45.95 Aligned_cols=93 Identities=14% Similarity=0.089 Sum_probs=59.1
Q ss_pred ccCCCEEEEEcccchHHHH-HHHH-HhhhhhhcCCcE-EEEEecCCh--hhHHHHHHcCceecCCCcCCHHhhcC----c
Q 014834 108 FNGINQIGVIGWGSQGPAQ-AQNL-RDSLAEAKSDIV-VKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETIS----G 178 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~Ai-A~~L-r~s~~~~~~G~~-ViVg~r~~s--~s~~~A~~~G~~~~~~~~~s~~Ea~~----~ 178 (417)
+++ ++|.|+|.|.+|... ++-+ +.. |.+ |++..++.+ ...+.+++.|....+....+..+ +. .
T Consensus 171 ~~~-~~VlV~GaG~vG~~a~iqla~k~~------Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~-i~~~~gg 242 (357)
T 2b5w_A 171 WDP-SSAFVLGNGSLGLLTLAMLKVDDK------GYENLYCLGRRDRPDPTIDIIEELDATYVDSRQTPVED-VPDVYEQ 242 (357)
T ss_dssp CCC-CEEEEECCSHHHHHHHHHHHHCTT------CCCEEEEEECCCSSCHHHHHHHHTTCEEEETTTSCGGG-HHHHSCC
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHHHc------CCcEEEEEeCCcccHHHHHHHHHcCCcccCCCccCHHH-HHHhCCC
Confidence 345 899999999999999 8888 777 886 776666543 04677888897531111112222 22 4
Q ss_pred CCEEEEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 179 ADIViLavpd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
.|+||-++.... .++.....++++-.++..
T Consensus 243 ~Dvvid~~g~~~---~~~~~~~~l~~~G~iv~~ 272 (357)
T 2b5w_A 243 MDFIYEATGFPK---HAIQSVQALAPNGVGALL 272 (357)
T ss_dssp EEEEEECSCCHH---HHHHHHHHEEEEEEEEEC
T ss_pred CCEEEECCCChH---HHHHHHHHHhcCCEEEEE
Confidence 799999987542 334444556666555543
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=90.94 E-value=0.16 Score=50.28 Aligned_cols=90 Identities=17% Similarity=0.116 Sum_probs=51.9
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCh--hhHHHHHHcCceecCCCcCCH-HhhcCcCCEEEEccC
Q 014834 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDI-YETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s--~s~~~A~~~G~~~~~~~~~s~-~Ea~~~ADIViLavp 187 (417)
+||+|+| .|.+|..+.+.|.++ ....++++......+ +... -.|... .+.+. .+...++|+||+|+|
T Consensus 7 ~kV~IiGAtG~iG~~llr~L~~~---~~~~~elv~i~s~~~~g~~~~---~~g~~i---~~~~~~~~~~~~~DvV~~a~g 77 (340)
T 2hjs_A 7 LNVAVVGATGSVGEALVGLLDER---DFPLHRLHLLASAESAGQRMG---FAESSL---RVGDVDSFDFSSVGLAFFAAA 77 (340)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHT---TCCCSCEEEEECTTTTTCEEE---ETTEEE---ECEEGGGCCGGGCSEEEECSC
T ss_pred cEEEEECCCCHHHHHHHHHHHhC---CCCcEEEEEEecCCCCCCccc---cCCcce---EEecCCHHHhcCCCEEEEcCC
Confidence 6899999 899999999998855 000224443332211 1100 011111 01111 123578999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecC
Q 014834 188 DAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~gaiLi~a~G 213 (417)
.....+..+... +.|..+++.++
T Consensus 78 ~~~s~~~a~~~~---~aG~kvId~Sa 100 (340)
T 2hjs_A 78 AEVSRAHAERAR---AAGCSVIDLSG 100 (340)
T ss_dssp HHHHHHHHHHHH---HTTCEEEETTC
T ss_pred cHHHHHHHHHHH---HCCCEEEEeCC
Confidence 887777666543 34766676655
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=90.93 E-value=1.7 Score=42.72 Aligned_cols=94 Identities=16% Similarity=0.095 Sum_probs=61.1
Q ss_pred ccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCcee-cCCCcCCHHhhc-----CcCC
Q 014834 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE-ENGTLGDIYETI-----SGSD 180 (417)
Q Consensus 108 l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~-~~~~~~s~~Ea~-----~~AD 180 (417)
-.| .+|.|+|. |.+|...++-++.. |.+|++.. + +...+.+++.|... .+....+..+.+ ...|
T Consensus 163 ~~g-~~VlV~Ga~G~vG~~a~qla~~~------Ga~Vi~~~-~-~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~~d 233 (371)
T 3gqv_A 163 SKP-VYVLVYGGSTATATVTMQMLRLS------GYIPIATC-S-PHNFDLAKSRGAEEVFDYRAPNLAQTIRTYTKNNLR 233 (371)
T ss_dssp SSC-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEE-C-GGGHHHHHHTTCSEEEETTSTTHHHHHHHHTTTCCC
T ss_pred CCC-cEEEEECCCcHHHHHHHHHHHHC------CCEEEEEe-C-HHHHHHHHHcCCcEEEECCCchHHHHHHHHccCCcc
Confidence 467 89999999 89999999999988 98876554 3 45578899998642 011112333322 2389
Q ss_pred EEEEccCCchHHHHHHHHHhcC-CCCcEEEEecC
Q 014834 181 LVLLLISDAAQADNYEKIFSCM-KPNSILGLSHG 213 (417)
Q Consensus 181 IViLavpd~~~~~Vl~eI~~~l-k~gaiLi~a~G 213 (417)
+||-++.... .++.....+ +++-.++..+.
T Consensus 234 ~v~d~~g~~~---~~~~~~~~l~~~~G~iv~~g~ 264 (371)
T 3gqv_A 234 YALDCITNVE---STTFCFAAIGRAGGHYVSLNP 264 (371)
T ss_dssp EEEESSCSHH---HHHHHHHHSCTTCEEEEESSC
T ss_pred EEEECCCchH---HHHHHHHHhhcCCCEEEEEec
Confidence 9999998643 233334455 46555555443
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=90.87 E-value=1.1 Score=44.23 Aligned_cols=88 Identities=13% Similarity=0.094 Sum_probs=55.7
Q ss_pred hhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCC-------------------hhhH---HHHHHc-
Q 014834 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSF---AEARAA- 160 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~-------------------s~s~---~~A~~~- 160 (417)
+..|++ .+|.|||+|-.|..++++|... |+ ++.+.+... .+.. +...+.
T Consensus 31 q~~L~~-~~VlivG~GGlG~~ia~~La~~------Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~ln 103 (346)
T 1y8q_A 31 QKRLRA-SRVLLVGLKGLGAEIAKNLILA------GVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLN 103 (346)
T ss_dssp HHHHHT-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTC
T ss_pred HHHHhC-CeEEEECCCHHHHHHHHHHHHc------CCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHC
Confidence 577888 9999999999999999999999 87 666663210 1111 111221
Q ss_pred -Ccee--cCCCc-CCHHhhcCcCCEEEEccCCchHHHHHHHHH
Q 014834 161 -GFTE--ENGTL-GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (417)
Q Consensus 161 -G~~~--~~~~~-~s~~Ea~~~ADIViLavpd~~~~~Vl~eI~ 199 (417)
++.. ..... ....+.+++.|+||.++-+......+.+..
T Consensus 104 p~v~v~~~~~~~~~~~~~~~~~~dvVv~~~d~~~~r~~ln~~~ 146 (346)
T 1y8q_A 104 PMVDVKVDTEDIEKKPESFFTQFDAVCLTCCSRDVIVKVDQIC 146 (346)
T ss_dssp TTSEEEEECSCGGGCCHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred CCeEEEEEecccCcchHHHhcCCCEEEEcCCCHHHHHHHHHHH
Confidence 2211 01111 123577889999999987665555565543
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.82 E-value=1.2 Score=41.44 Aligned_cols=45 Identities=9% Similarity=-0.018 Sum_probs=33.8
Q ss_pred cccccchhhccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 014834 99 DLFKLLPDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (417)
Q Consensus 99 ~~f~~~~~~l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~ 150 (417)
|-.+.....++| |+|-|.|. |-+|.++++.|.+. |.+|++..|..
T Consensus 20 ~~~~~~~~~l~~-k~vlITGasggIG~~la~~L~~~------G~~V~~~~r~~ 65 (272)
T 1yb1_A 20 GHMPKRRKSVTG-EIVLITGAGHGIGRLTAYEFAKL------KSKLVLWDINK 65 (272)
T ss_dssp -----CCCCCTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred cccCCcccccCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEEcCH
Confidence 544544566888 99999984 68999999999999 99988877753
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.78 E-value=1.8 Score=40.86 Aligned_cols=72 Identities=17% Similarity=0.147 Sum_probs=45.3
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCC-hhhH---HHHHHcC-ceecCCCcCC---HHhhcCc--C
Q 014834 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSF---AEARAAG-FTEENGTLGD---IYETISG--S 179 (417)
Q Consensus 111 mkkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~-s~s~---~~A~~~G-~~~~~~~~~s---~~Ea~~~--A 179 (417)
||+|.|.| .|-+|.++++.|.+. |++|++..|.. .... +.....+ +....+.+.+ +++++++ .
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 74 (347)
T 1orr_A 1 MAKLLITGGCGFLGSNLASFALSQ------GIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMP 74 (347)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCC
T ss_pred CcEEEEeCCCchhHHHHHHHHHhC------CCEEEEEeCCCccCchhhhhhhccCCceEEEEcCCCCHHHHHHHHhccCC
Confidence 68999999 699999999999998 99988776632 1111 1111122 2211111233 3456777 9
Q ss_pred CEEEEccCC
Q 014834 180 DLVLLLISD 188 (417)
Q Consensus 180 DIViLavpd 188 (417)
|+||.+...
T Consensus 75 d~vih~A~~ 83 (347)
T 1orr_A 75 DSCFHLAGQ 83 (347)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCcc
Confidence 999988653
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=90.67 E-value=0.31 Score=46.61 Aligned_cols=88 Identities=15% Similarity=0.140 Sum_probs=57.7
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCC
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd 188 (417)
.| .+|.|+|.|.+|...++-++.. |.+|++.. + +...+.+++.|.... +.+.+++-...|+||-++..
T Consensus 142 ~g-~~VlV~GaG~vG~~a~qlak~~------Ga~Vi~~~-~-~~~~~~~~~lGa~~v---~~d~~~v~~g~Dvv~d~~g~ 209 (315)
T 3goh_A 142 KQ-REVLIVGFGAVNNLLTQMLNNA------GYVVDLVS-A-SLSQALAAKRGVRHL---YREPSQVTQKYFAIFDAVNS 209 (315)
T ss_dssp SC-CEEEEECCSHHHHHHHHHHHHH------TCEEEEEC-S-SCCHHHHHHHTEEEE---ESSGGGCCSCEEEEECC---
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEE-C-hhhHHHHHHcCCCEE---EcCHHHhCCCccEEEECCCc
Confidence 56 8999999999999999999988 99887665 4 455788888887531 22322333568999988875
Q ss_pred chHHHHHHHHHhcCCCCcEEEEec
Q 014834 189 AAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 189 ~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
... ......++++-.++..+
T Consensus 210 ~~~----~~~~~~l~~~G~~v~~g 229 (315)
T 3goh_A 210 QNA----AALVPSLKANGHIICIQ 229 (315)
T ss_dssp --------TTGGGEEEEEEEEEEC
T ss_pred hhH----HHHHHHhcCCCEEEEEe
Confidence 433 34456677766555443
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=90.65 E-value=0.54 Score=43.40 Aligned_cols=89 Identities=11% Similarity=0.047 Sum_probs=54.3
Q ss_pred hhccCCCEEEEEcc-cc-hHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEE
Q 014834 106 DAFNGINQIGVIGW-GS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 106 ~~l~gmkkIgIIG~-G~-mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIVi 183 (417)
..++| |++-|.|. |. +|.++++.|.+. |.+|++..|+.++..+...+. . +. ...++.+
T Consensus 18 ~~l~~-k~vlITGasg~GIG~~~a~~l~~~------G~~V~~~~r~~~~~~~~~~~l--~----------~~-~~~~~~~ 77 (266)
T 3o38_A 18 GLLKG-KVVLVTAAAGTGIGSTTARRALLE------GADVVISDYHERRLGETRDQL--A----------DL-GLGRVEA 77 (266)
T ss_dssp STTTT-CEEEESSCSSSSHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHH--H----------TT-CSSCEEE
T ss_pred cCCCC-CEEEEECCCCCchHHHHHHHHHHC------CCEEEEecCCHHHHHHHHHHH--H----------hc-CCCceEE
Confidence 45778 99999998 85 999999999999 999988877643322222211 0 00 1122333
Q ss_pred Ec--cCC-chHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 184 LL--ISD-AAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 184 La--vpd-~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
+. +.+ ....++++++.....+=.+|++.+|+
T Consensus 78 ~~~Dl~~~~~v~~~~~~~~~~~g~id~li~~Ag~ 111 (266)
T 3o38_A 78 VVCDVTSTEAVDALITQTVEKAGRLDVLVNNAGL 111 (266)
T ss_dssp EECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred EEeCCCCHHHHHHHHHHHHHHhCCCcEEEECCCc
Confidence 22 233 33445666666554333477888886
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=90.65 E-value=0.97 Score=44.84 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=32.0
Q ss_pred hhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEec
Q 014834 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r 148 (417)
++.|++ .+|.|||+|-.|..++++|..+ |+ ++.+.++
T Consensus 113 q~~L~~-~~VlvvG~GglGs~va~~La~a------Gvg~i~lvD~ 150 (353)
T 3h5n_A 113 QDKLKN-AKVVILGCGGIGNHVSVILATS------GIGEIILIDN 150 (353)
T ss_dssp HHHHHT-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEEEC
T ss_pred HHHHhC-CeEEEECCCHHHHHHHHHHHhC------CCCeEEEECC
Confidence 577888 9999999999999999999998 87 5666654
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=90.59 E-value=0.19 Score=49.85 Aligned_cols=35 Identities=31% Similarity=0.275 Sum_probs=30.5
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~ 149 (417)
+.| +||+|||.|..|..+++.+++. |++|++.+..
T Consensus 10 ~~~-~~IlIlG~G~lg~~la~aa~~l------G~~viv~d~~ 44 (377)
T 3orq_A 10 KFG-ATIGIIGGGQLGKMMAQSAQKM------GYKVVVLDPS 44 (377)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESC
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEECC
Confidence 355 9999999999999999999999 9998877653
|
| >4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A | Back alignment and structure |
|---|
Probab=90.58 E-value=0.56 Score=47.07 Aligned_cols=70 Identities=9% Similarity=-0.003 Sum_probs=48.7
Q ss_pred hccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecC----ChhhHHH----HHHcCceecCCCcCCHHhhcC
Q 014834 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAE----ARAAGFTEENGTLGDIYETIS 177 (417)
Q Consensus 107 ~l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~----~s~s~~~----A~~~G~~~~~~~~~s~~Ea~~ 177 (417)
.|+| .||+|||= +++..+++..+... |.+|.+.... ++.-.+. +++.|.... .+.+++ +++
T Consensus 150 ~l~g-lkva~vGD~~rva~Sl~~~~~~~------G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~--~~~d~~-av~ 219 (355)
T 4a8p_A 150 KLED-CKVVFVGDATQVCFSLGLITTKM------GMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFL--VTDDAS-SVE 219 (355)
T ss_dssp CGGG-CEEEEESCCCHHHHHHHHHHHHT------TCEEEEECCTTSSCCHHHHHHHHHHHHHHSCEEE--EECCGG-GGT
T ss_pred CCCC-CEEEEECCCchhHHHHHHHHHHc------CCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEE--EECCHH-HHc
Confidence 5788 99999995 58899999998887 9988776543 1222222 344563210 146788 999
Q ss_pred cCCEEEEcc
Q 014834 178 GSDLVLLLI 186 (417)
Q Consensus 178 ~ADIViLav 186 (417)
++|+|+.-+
T Consensus 220 ~aDVVytd~ 228 (355)
T 4a8p_A 220 GADFLYTDV 228 (355)
T ss_dssp TCSEEEECC
T ss_pred CCCEEEecc
Confidence 999999743
|
| >3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A | Back alignment and structure |
|---|
Probab=90.54 E-value=0.55 Score=50.21 Aligned_cols=36 Identities=14% Similarity=0.152 Sum_probs=31.2
Q ss_pred hhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEe
Q 014834 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~ 147 (417)
.+.|++ .+|.|||+|-.|.++|++|... |+ ++.+.+
T Consensus 322 q~kL~~-~kVLIVGaGGLGs~va~~La~a------GVG~ItLvD 358 (598)
T 3vh1_A 322 LDIIKN-TKVLLLGAGTLGCYVSRALIAW------GVRKITFVD 358 (598)
T ss_dssp HHHHHT-CEEEEECCSHHHHHHHHHHHTT------TCCEEEEEC
T ss_pred HHHHhC-CeEEEECCCHHHHHHHHHHHHc------CCCEEEEEC
Confidence 477888 9999999999999999999998 87 566663
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=90.54 E-value=0.63 Score=42.87 Aligned_cols=88 Identities=18% Similarity=0.125 Sum_probs=54.3
Q ss_pred hhccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
+.|+| |++-|.|. |-+|.++++.|.+. |.+|++..|+.++..+.+.+.|... . .-.+|+
T Consensus 2 ~~l~g-k~vlVTGas~gIG~a~a~~l~~~------G~~V~~~~r~~~~~~~~~~~~~~~~---------~-~~~~Dv--- 61 (247)
T 3rwb_A 2 ERLAG-KTALVTGAAQGIGKAIAARLAAD------GATVIVSDINAEGAKAAAASIGKKA---------R-AIAADI--- 61 (247)
T ss_dssp CTTTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEECSCHHHHHHHHHHHCTTE---------E-ECCCCT---
T ss_pred CCcCC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHhCCce---------E-EEEcCC---
Confidence 35788 99999996 57999999999999 9999887776444333333322110 0 112332
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
+.+....++++++.....+=.+|+..+|+
T Consensus 62 -~~~~~v~~~~~~~~~~~g~id~lv~nAg~ 90 (247)
T 3rwb_A 62 -SDPGSVKALFAEIQALTGGIDILVNNASI 90 (247)
T ss_dssp -TCHHHHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred -CCHHHHHHHHHHHHHHCCCCCEEEECCCC
Confidence 22233456676666554333467777776
|
| >1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A* | Back alignment and structure |
|---|
Probab=90.50 E-value=0.51 Score=47.90 Aligned_cols=95 Identities=15% Similarity=0.198 Sum_probs=52.4
Q ss_pred CCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEE-E-EecCChhhHHHHHHcCceec---CCC---------------
Q 014834 110 GINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVK-V-GLRKGSRSFAEARAAGFTEE---NGT--------------- 168 (417)
Q Consensus 110 gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~Vi-V-g~r~~s~s~~~A~~~G~~~~---~~~--------------- 168 (417)
+|+||+|+|+ |++|.....-+++. ++ .++|. + ..++-+...+.+++.+.... |..
T Consensus 3 ~m~rI~ILGsTGSIG~~~l~vi~~~-p~---~~~v~al~ag~ni~~l~~~~~~f~~~~v~v~d~~~~~~l~~~l~~~~~~ 78 (388)
T 1r0k_A 3 QPRTVTVLGATGSIGHSTLDLIERN-LD---RYQVIALTANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVE 78 (388)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHT-GG---GEEEEEEEESSCHHHHHHHHHHTTCSEEEESCGGGHHHHHHHTTTCSSE
T ss_pred CceEEEEECCCeEeHHHHHHHHHhC-cC---cEEEEEEEcCCCHHHHHHHHHHcCCcEEEEcChHHHHHHHHHhccCCcE
Confidence 4689999999 99999999888875 11 14543 2 23332333445555543210 000
Q ss_pred ----cCCHHhhcC-cCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 169 ----LGDIYETIS-GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 169 ----~~s~~Ea~~-~ADIViLavpd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
.....+++. ..|+|+.+++-....+.. ...++.|+.|+.+
T Consensus 79 v~~g~~~~~el~~~~iDvVV~ai~G~aGl~pt---laAi~aGK~VvlA 123 (388)
T 1r0k_A 79 AAAGADALVEAAMMGADWTMAAIIGCAGLKAT---LAAIRKGKTVALA 123 (388)
T ss_dssp EEESHHHHHHHHTSCCSEEEECCCSGGGHHHH---HHHHHTTSEEEEC
T ss_pred EEeCccHHHHHHcCCCCEEEEeCCCHHHHHHH---HHHHHCCCEEEEe
Confidence 001123432 279999999864433211 2334567766654
|
| >3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri} | Back alignment and structure |
|---|
Probab=90.47 E-value=0.46 Score=39.71 Aligned_cols=92 Identities=18% Similarity=0.125 Sum_probs=54.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcC--cCCEEEEccCCc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~--~ADIViLavpd~ 189 (417)
+++.|||.|..|..++..|++. .|++++...+.+..... ..-.|+.+. + ..++.+.++ +.|.|++++|..
T Consensus 5 ~~vlIiGaG~~g~~l~~~l~~~-----~g~~vvg~~d~~~~~~g-~~i~g~pV~-g-~~~l~~~~~~~~id~viia~~~~ 76 (141)
T 3nkl_A 5 KKVLIYGAGSAGLQLANMLRQG-----KEFHPIAFIDDDRKKHK-TTMQGITIY-R-PKYLERLIKKHCISTVLLAVPSA 76 (141)
T ss_dssp EEEEEECCSHHHHHHHHHHHHS-----SSEEEEEEECSCGGGTT-CEETTEEEE-C-GGGHHHHHHHHTCCEEEECCTTS
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CCcEEEEEEECCcccCC-CEecCeEEE-C-HHHHHHHHHHCCCCEEEEeCCCC
Confidence 7899999999999999999874 16777655554332110 011355441 1 234555544 578999999965
Q ss_pred hH---HHHHHHHHhcCCCCcEEEEecCc
Q 014834 190 AQ---ADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 190 ~~---~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
.. .+++..+. +.|.-+.+...+
T Consensus 77 ~~~~~~~i~~~l~---~~gv~v~~vP~~ 101 (141)
T 3nkl_A 77 SQVQKKVIIESLA---KLHVEVLTIPNL 101 (141)
T ss_dssp CHHHHHHHHHHHH---TTTCEEEECCCH
T ss_pred CHHHHHHHHHHHH---HcCCeEEECCCH
Confidence 43 23443332 335455555544
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=90.37 E-value=0.15 Score=51.68 Aligned_cols=68 Identities=15% Similarity=0.227 Sum_probs=47.4
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhh-HHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s-~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
+++ |+|.|||+|..|.+.|+-|.+. |++|.+.+.+.... ..... .|+....+. ...+.++.+|+||+.
T Consensus 3 ~~~-~~v~viG~G~~G~~~a~~l~~~------G~~v~~~D~~~~~~~~~~l~-~G~~~~~g~--~~~~~~~~~d~vV~s 71 (439)
T 2x5o_A 3 YQG-KNVVIIGLGLTGLSCVDFFLAR------GVTPRVMDTRMTPPGLDKLP-EAVERHTGS--LNDEWLMAADLIVAS 71 (439)
T ss_dssp CTT-CCEEEECCHHHHHHHHHHHHTT------TCCCEEEESSSSCTTGGGSC-TTSCEEESS--CCHHHHHTCSEEEEC
T ss_pred CCC-CEEEEEeecHHHHHHHHHHHhC------CCEEEEEECCCCcchhHHhh-CCCEEEECC--CcHHHhccCCEEEeC
Confidence 567 8999999999999999999988 99998877653321 11122 576541111 124566689999986
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=90.35 E-value=0.16 Score=51.12 Aligned_cols=88 Identities=15% Similarity=0.221 Sum_probs=53.6
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCc---EEEEEecC--ChhhHHHHHHcCceecCCCcCCH-HhhcCcCCEEEE
Q 014834 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRK--GSRSFAEARAAGFTEENGTLGDI-YETISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~---~ViVg~r~--~s~s~~~A~~~G~~~~~~~~~s~-~Ea~~~ADIViL 184 (417)
.||+||| .|..|.-+.+-|.+. ++ ++...... ..+... -.|... .+.+. .+.++++|+||+
T Consensus 3 ~kVaIvGATG~vG~eLlrlL~~~------~~p~~el~~~as~~saG~~~~---~~~~~~---~~~~~~~~~~~~~Dvvf~ 70 (366)
T 3pwk_A 3 YTVAVVGATGAVGAQMIKMLEES------TLPIDKIRYLASARSAGKSLK---FKDQDI---TIEETTETAFEGVDIALF 70 (366)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTC------CCCEEEEEEEECTTTTTCEEE---ETTEEE---EEEECCTTTTTTCSEEEE
T ss_pred cEEEEECCCChHHHHHHHHHhcC------CCCcEEEEEEEccccCCCcce---ecCCCc---eEeeCCHHHhcCCCEEEE
Confidence 5899999 799999999988876 54 33222211 111111 011110 01111 234678999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
|+|.....+..+.+. +.|..|++.++-
T Consensus 71 a~~~~~s~~~a~~~~---~~G~~vIDlSa~ 97 (366)
T 3pwk_A 71 SAGSSTSAKYAPYAV---KAGVVVVDNTSY 97 (366)
T ss_dssp CSCHHHHHHHHHHHH---HTTCEEEECSST
T ss_pred CCChHhHHHHHHHHH---HCCCEEEEcCCc
Confidence 999887777776654 457778877763
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.31 E-value=0.47 Score=45.49 Aligned_cols=91 Identities=14% Similarity=0.103 Sum_probs=57.2
Q ss_pred cCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCcee-cCCCcCCHHhh----c--CcCC
Q 014834 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE-ENGTLGDIYET----I--SGSD 180 (417)
Q Consensus 109 ~gmkkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~-~~~~~~s~~Ea----~--~~AD 180 (417)
.| ++|.|+| .|.+|.+.++.++.. |.+|++..++ ....+.+++.|... .|-...+..+. . ...|
T Consensus 140 ~g-~~vlV~Ga~ggiG~~~~~~a~~~------G~~V~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~D 211 (327)
T 1qor_A 140 PD-EQFLFHAAAGGVGLIACQWAKAL------GAKLIGTVGT-AQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVR 211 (327)
T ss_dssp TT-CEEEESSTTBHHHHHHHHHHHHH------TCEEEEEESS-HHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEE
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHc------CCEEEEEeCC-HHHHHHHHHcCCCEEEECCCccHHHHHHHHhCCCCce
Confidence 46 8999999 799999999999998 9988776665 33456666666431 01111122221 1 2478
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 181 IViLavpd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
+||.++... .++...+.++++-.++..
T Consensus 212 ~vi~~~g~~----~~~~~~~~l~~~G~iv~~ 238 (327)
T 1qor_A 212 VVYDSVGRD----TWERSLDCLQRRGLMVSF 238 (327)
T ss_dssp EEEECSCGG----GHHHHHHTEEEEEEEEEC
T ss_pred EEEECCchH----HHHHHHHHhcCCCEEEEE
Confidence 999888733 344445566666555543
|
| >1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A* | Back alignment and structure |
|---|
Probab=90.26 E-value=0.67 Score=45.40 Aligned_cols=73 Identities=10% Similarity=0.043 Sum_probs=49.4
Q ss_pred hccCCCEEEEEcc---cchHHHHHHHHHhhhhhhcCCcEEEEEecCCh-hhHHHHHHcCceecCCCcCCHHhhcCcCCEE
Q 014834 107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (417)
Q Consensus 107 ~l~gmkkIgIIG~---G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s-~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIV 182 (417)
.|+| .||++||= +++..+++..+... .|++|.+.....- .....+++.|.... .+.+++|+++++|+|
T Consensus 146 ~l~g-l~va~vGD~~~~rva~Sl~~~~~~~-----~g~~v~~~~P~~~~~~~~~~~~~g~~~~--~~~d~~eav~~aDvv 217 (299)
T 1pg5_A 146 TIDG-LVFALLGDLKYARTVNSLLRILTRF-----RPKLVYLISPQLLRARKEILDELNYPVK--EVENPFEVINEVDVL 217 (299)
T ss_dssp CSTT-CEEEEEECCSSCHHHHHHHHHGGGS-----CCSEEEEECCGGGCCCHHHHTTCCSCEE--EESCGGGTGGGCSEE
T ss_pred CcCC-cEEEEECCCCCCchHHHHHHHHHhC-----CCCEEEEECCchhcCCHHHHHHcCCeEE--EeCCHHHHhcCCCEE
Confidence 4788 89999998 58999998887643 1788877654321 11122345564310 146899999999999
Q ss_pred EEccC
Q 014834 183 LLLIS 187 (417)
Q Consensus 183 iLavp 187 (417)
+...=
T Consensus 218 yt~~~ 222 (299)
T 1pg5_A 218 YVTRI 222 (299)
T ss_dssp EEECC
T ss_pred EeCCc
Confidence 98754
|
| >2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A* | Back alignment and structure |
|---|
Probab=90.24 E-value=0.11 Score=52.86 Aligned_cols=79 Identities=15% Similarity=0.056 Sum_probs=56.0
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc---EEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccC
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~---~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavp 187 (417)
.||.|||. |..|..-+.-+..- |. +|.+.+++.. ..|-. . +.+.++|+||.++.
T Consensus 215 ~kV~ViG~~G~vG~~A~~~a~~l------Ga~~~~V~v~D~~~~-------~~g~~-----~----~~i~~aDivIn~vl 272 (394)
T 2qrj_A 215 PTVLIIGALGRCGSGAIDLLHKV------GIPDANILKWDIKET-------SRGGP-----F----DEIPQADIFINCIY 272 (394)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHT------TCCGGGEEEECHHHH-------TTCSC-----C----THHHHSSEEEECCC
T ss_pred CeEEEEcCCCHHHHHHHHHHHhC------CCCcCceEEeecccc-------ccCCc-----h----hhHhhCCEEEECcC
Confidence 58999999 99999988888877 87 7887765321 11322 1 34669999999988
Q ss_pred Cch-HHHHH-HHHHhcC-CCCcEEEEec
Q 014834 188 DAA-QADNY-EKIFSCM-KPNSILGLSH 212 (417)
Q Consensus 188 d~~-~~~Vl-~eI~~~l-k~gaiLi~a~ 212 (417)
-.. .+.++ ++....| |||++|+|.+
T Consensus 273 ig~~aP~Lvt~e~v~~m~k~gsVIVDVA 300 (394)
T 2qrj_A 273 LSKPIAPFTNMEKLNNPNRRLRTVVDVS 300 (394)
T ss_dssp CCSSCCCSCCHHHHCCTTCCCCEEEETT
T ss_pred cCCCCCcccCHHHHhcCcCCCeEEEEEe
Confidence 422 22334 3555678 9999999775
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=90.17 E-value=1.5 Score=45.32 Aligned_cols=94 Identities=7% Similarity=0.086 Sum_probs=64.6
Q ss_pred hccCCCEEEEEccc----------chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcC------------cee
Q 014834 107 AFNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG------------FTE 164 (417)
Q Consensus 107 ~l~gmkkIgIIG~G----------~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G------------~~~ 164 (417)
.++| ++|+|+|+- +-...++..|.+. |.+|.+++..-.. +....++ +..
T Consensus 325 ~~~~-~~v~vlGlafK~~~dD~R~Sp~~~i~~~L~~~------g~~v~~~DP~~~~--~~~~~~~~~~~~~~~~~~~~~~ 395 (478)
T 2y0c_A 325 DLTG-RTFAIWGLAFKPNTDDMREAPSRELIAELLSR------GARIAAYDPVAQE--EARRVIALDLADHPSWLERLSF 395 (478)
T ss_dssp CCTT-CEEEEECCSSSSSCCCCTTCHHHHHHHHHHHT------TCEEEEECTTTHH--HHHHHHHHHTTTCHHHHTTEEE
T ss_pred cCCC-CEEEEEecccCCCCCccccChHHHHHHHHHHC------CCEEEEECCCccH--HHHHhhccccccccccccceee
Confidence 4678 999999973 3456778888887 9998877654222 1111122 432
Q ss_pred cCCCcCCHHhhcCcCCEEEEccCCchHHH-HHHHHHhcCCCCcEEEEecCc
Q 014834 165 ENGTLGDIYETISGSDLVLLLISDAAQAD-NYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 165 ~~~~~~s~~Ea~~~ADIViLavpd~~~~~-Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
+.+..+++++||+|++++.-..... -++.+...|+. .+|++.-++
T Consensus 396 ----~~~~~~~~~~ad~~vi~t~~~~f~~~~~~~~~~~~~~-~~i~D~r~~ 441 (478)
T 2y0c_A 396 ----VDDEAQAARDADALVIVTEWKIFKSPDFVALGRLWKT-PVIFDGRNL 441 (478)
T ss_dssp ----CSSHHHHTTTCSEEEECSCCGGGGSCCHHHHHTTCSS-CEEEESSCC
T ss_pred ----cCCHHHHHhCCCEEEEecCChHhhccCHHHHHhhcCC-CEEEECCCC
Confidence 4578899999999999999877654 24567666654 677877664
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=90.16 E-value=0.99 Score=41.80 Aligned_cols=71 Identities=15% Similarity=0.119 Sum_probs=47.2
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCC---HHhhcCcCCEEEEccC
Q 014834 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s---~~Ea~~~ADIViLavp 187 (417)
|||.|+| .|.+|.++++.|.+. .|.+|++..|+.++... ....++....+.+.+ +.++++++|+||.+..
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~-----~g~~V~~~~R~~~~~~~-~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 74 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIAN-----HIDHFHIGVRNVEKVPD-DWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPS 74 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHT-----TCTTEEEEESSGGGSCG-GGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred CEEEEEcCCchHHHHHHHHHhhC-----CCCcEEEEECCHHHHHH-hhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence 4799999 599999999998874 16788877776443221 122344322222333 4568899999999876
Q ss_pred C
Q 014834 188 D 188 (417)
Q Consensus 188 d 188 (417)
.
T Consensus 75 ~ 75 (289)
T 3e48_A 75 I 75 (289)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.14 E-value=0.57 Score=46.22 Aligned_cols=92 Identities=16% Similarity=0.149 Sum_probs=57.1
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCC-cEEEEEecCChhhHHHHHHcCceec-CCC---cCCHHhhc------C
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEE-NGT---LGDIYETI------S 177 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G-~~ViVg~r~~s~s~~~A~~~G~~~~-~~~---~~s~~Ea~------~ 177 (417)
.| ++|.|+|.|.+|...++-++.. | .+|++..++ +...+.+++.|.... +.. ..+..+.+ +
T Consensus 195 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi~~~~~-~~~~~~~~~lGa~~vi~~~~~~~~~~~~~v~~~~~g~ 266 (380)
T 1vj0_A 195 AG-KTVVIQGAGPLGLFGVVIARSL------GAENVIVIAGS-PNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGR 266 (380)
T ss_dssp BT-CEEEEECCSHHHHHHHHHHHHT------TBSEEEEEESC-HHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTS
T ss_pred CC-CEEEEECcCHHHHHHHHHHHHc------CCceEEEEcCC-HHHHHHHHHcCCcEEEeccccCcchHHHHHHHHhCCC
Confidence 46 8999999999999999999988 9 488776655 445677888886420 100 00111111 1
Q ss_pred cCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 178 ~ADIViLavpd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
..|+||-++.... .++...+.++++-.++..
T Consensus 267 g~Dvvid~~g~~~---~~~~~~~~l~~~G~iv~~ 297 (380)
T 1vj0_A 267 GADFILEATGDSR---ALLEGSELLRRGGFYSVA 297 (380)
T ss_dssp CEEEEEECSSCTT---HHHHHHHHEEEEEEEEEC
T ss_pred CCcEEEECCCCHH---HHHHHHHHHhcCCEEEEE
Confidence 5799998887432 233333445555554433
|
| >3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A* | Back alignment and structure |
|---|
Probab=90.12 E-value=0.58 Score=48.50 Aligned_cols=73 Identities=15% Similarity=0.127 Sum_probs=40.5
Q ss_pred CEEEEEcccchHHH--HHHHHHhhhhhhcCCcEEEEEecCChhhH-------HHHHHcCc--eecCCCcCCHHhhcCcCC
Q 014834 112 NQIGVIGWGSQGPA--QAQNLRDSLAEAKSDIVVKVGLRKGSRSF-------AEARAAGF--TEENGTLGDIYETISGSD 180 (417)
Q Consensus 112 kkIgIIG~G~mG~A--iA~~Lr~s~~~~~~G~~ViVg~r~~s~s~-------~~A~~~G~--~~~~~~~~s~~Ea~~~AD 180 (417)
+||+|||.|+.|.+ +...|.....=.+.+.+|+..+....+.. ......|. .. ..+.|.+|++++||
T Consensus 1 mKI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~~~~~~~~~~~~~~~i--~~t~d~~eAl~gAD 78 (477)
T 3u95_A 1 MKISIVGAGSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYILARKYVEELNSPVKV--VKTESLDEAIEGAD 78 (477)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHHHHHHHHHHHTCCCEE--EEESCHHHHHTTCS
T ss_pred CEEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHHHHHHHHHHcCCCeEE--EEeCCHHHHhCCCC
Confidence 58999999998755 33334332100111235655554432211 11222332 22 12468899999999
Q ss_pred EEEEcc
Q 014834 181 LVLLLI 186 (417)
Q Consensus 181 IViLav 186 (417)
+||+.+
T Consensus 79 ~Vi~~~ 84 (477)
T 3u95_A 79 FIINTA 84 (477)
T ss_dssp EEEECC
T ss_pred EEEECc
Confidence 999986
|
| >4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A | Back alignment and structure |
|---|
Probab=90.11 E-value=1.1 Score=48.03 Aligned_cols=38 Identities=13% Similarity=0.121 Sum_probs=32.2
Q ss_pred chhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEec
Q 014834 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (417)
Q Consensus 104 ~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r 148 (417)
+.+.|++ .+|.|||+|-.|..+|++|... |+ ++.+.++
T Consensus 320 g~ekL~~-arVLIVGaGGLGs~vA~~La~a------GVG~ItLvD~ 358 (615)
T 4gsl_A 320 NLDIIKN-TKVLLLGAGTLGCYVSRALIAW------GVRKITFVDN 358 (615)
T ss_dssp CHHHHHT-CEEEEECCSHHHHHHHHHHHHT------TCCEEEEECC
T ss_pred hHHHHhC-CeEEEECCCHHHHHHHHHHHHc------CCCEEEEEcC
Confidence 3567899 9999999999999999999998 87 5666554
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=90.05 E-value=1.3 Score=43.29 Aligned_cols=91 Identities=14% Similarity=0.190 Sum_probs=59.8
Q ss_pred cCCCEEEEEc-ccchHHHHHHHHHh-hhhhhcCCcEEEEEecCChhhHHHHHHcCceec-CCCcCCHHhhc-----CcCC
Q 014834 109 NGINQIGVIG-WGSQGPAQAQNLRD-SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI-----SGSD 180 (417)
Q Consensus 109 ~gmkkIgIIG-~G~mG~AiA~~Lr~-s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~-~~~~~s~~Ea~-----~~AD 180 (417)
.| .+|.|+| .|.+|...++-++. . |.+|++..+. ....+.+++.|.... +. ..+..+.+ ...|
T Consensus 171 ~g-~~VlV~Ga~G~vG~~a~qlak~~~------g~~Vi~~~~~-~~~~~~~~~lGad~vi~~-~~~~~~~v~~~~~~g~D 241 (363)
T 4dvj_A 171 AA-PAILIVGGAGGVGSIAVQIARQRT------DLTVIATASR-PETQEWVKSLGAHHVIDH-SKPLAAEVAALGLGAPA 241 (363)
T ss_dssp SE-EEEEEESTTSHHHHHHHHHHHHHC------CSEEEEECSS-HHHHHHHHHTTCSEEECT-TSCHHHHHHTTCSCCEE
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHhc------CCEEEEEeCC-HHHHHHHHHcCCCEEEeC-CCCHHHHHHHhcCCCce
Confidence 56 8999999 99999999998886 5 7787765554 445678888886421 11 11233332 2579
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 181 IViLavpd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
+||-++... ..++.....++++-.++..
T Consensus 242 vvid~~g~~---~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 242 FVFSTTHTD---KHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp EEEECSCHH---HHHHHHHHHSCTTCEEEEC
T ss_pred EEEECCCch---hhHHHHHHHhcCCCEEEEE
Confidence 999988743 2344555567777665544
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=90.01 E-value=1.5 Score=44.96 Aligned_cols=63 Identities=19% Similarity=0.248 Sum_probs=45.9
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCC
Q 014834 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd 188 (417)
|||.|.| .|.+|.++++.|.+. |++|++..|...+. ..+.. |- .....++++++|+||.+...
T Consensus 148 m~VLVTGatG~IG~~l~~~L~~~------G~~V~~l~R~~~~~------~~v~~-d~-~~~~~~~l~~~D~Vih~A~~ 211 (516)
T 3oh8_A 148 LTVAITGSRGLVGRALTAQLQTG------GHEVIQLVRKEPKP------GKRFW-DP-LNPASDLLDGADVLVHLAGE 211 (516)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESSSCCT------TCEEC-CT-TSCCTTTTTTCSEEEECCCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEECCCCCc------cceee-cc-cchhHHhcCCCCEEEECCCC
Confidence 8999999 699999999999999 99998887764431 11221 11 12345678899999987543
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=89.98 E-value=0.4 Score=46.87 Aligned_cols=89 Identities=21% Similarity=0.147 Sum_probs=57.2
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHH-HcCceec-CCCcCC---HHhhcCcCCEEE
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEE-NGTLGD---IYETISGSDLVL 183 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~-~~G~~~~-~~~~~s---~~Ea~~~ADIVi 183 (417)
.| .+|.|+|.|.+|...++-++.. |.+|++..++.+ ..+.++ +.|.... + ..+ ..++....|+||
T Consensus 180 ~g-~~VlV~GaG~vG~~a~qlak~~------Ga~Vi~~~~~~~-~~~~~~~~lGa~~vi~--~~~~~~~~~~~~g~D~vi 249 (357)
T 2cf5_A 180 PG-LRGGILGLGGVGHMGVKIAKAM------GHHVTVISSSNK-KREEALQDLGADDYVI--GSDQAKMSELADSLDYVI 249 (357)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHH------TCEEEEEESSTT-HHHHHHTTSCCSCEEE--TTCHHHHHHSTTTEEEEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEeCChH-HHHHHHHHcCCceeec--cccHHHHHHhcCCCCEEE
Confidence 67 8999999999999999999988 988877666543 345555 6775320 0 112 223334679999
Q ss_pred EccCCc-hHHHHHHHHHhcCCCCcEEEEe
Q 014834 184 LLISDA-AQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 184 Lavpd~-~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
-++... .... ....++++-.++..
T Consensus 250 d~~g~~~~~~~----~~~~l~~~G~iv~~ 274 (357)
T 2cf5_A 250 DTVPVHHALEP----YLSLLKLDGKLILM 274 (357)
T ss_dssp ECCCSCCCSHH----HHTTEEEEEEEEEC
T ss_pred ECCCChHHHHH----HHHHhccCCEEEEe
Confidence 888743 2333 33455665555433
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=89.90 E-value=2.1 Score=39.69 Aligned_cols=89 Identities=11% Similarity=0.072 Sum_probs=55.3
Q ss_pred cCCCEEEEEcccchHHHHHHHHH-hhhhhhcCCcEEEEEecCChhhHHHHHHc----C----ceecCCCcCCHHhhcCcC
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEARAA----G----FTEENGTLGDIYETISGS 179 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr-~s~~~~~~G~~ViVg~r~~s~s~~~A~~~----G----~~~~~~~~~s~~Ea~~~A 179 (417)
.| .+|--||||.-+.+. .|. .. |.+|+ +.+......+.+++. | +... ..+..+.-...
T Consensus 64 ~~-~~vLDiGcG~G~~~~--~l~~~~------~~~v~-gvd~s~~~~~~a~~~~~~~~~~~~~~~~---~~d~~~~~~~f 130 (287)
T 1kpg_A 64 PG-MTLLDVGCGWGATMM--RAVEKY------DVNVV-GLTLSKNQANHVQQLVANSENLRSKRVL---LAGWEQFDEPV 130 (287)
T ss_dssp TT-CEEEEETCTTSHHHH--HHHHHH------CCEEE-EEESCHHHHHHHHHHHHTCCCCSCEEEE---ESCGGGCCCCC
T ss_pred Cc-CEEEEECCcccHHHH--HHHHHc------CCEEE-EEECCHHHHHHHHHHHHhcCCCCCeEEE---ECChhhCCCCe
Confidence 45 799999999844333 333 44 66664 555544445555442 2 2211 23444443678
Q ss_pred CEEEEc-----cCCchHHHHHHHHHhcCCCCcEEEE
Q 014834 180 DLVLLL-----ISDAAQADNYEKIFSCMKPNSILGL 210 (417)
Q Consensus 180 DIViLa-----vpd~~~~~Vl~eI~~~lk~gaiLi~ 210 (417)
|+|+.. +++.....+++++...||||-.+++
T Consensus 131 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 166 (287)
T 1kpg_A 131 DRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLL 166 (287)
T ss_dssp SEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEE
T ss_pred eEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEE
Confidence 999876 4555667889999999999886553
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=89.89 E-value=0.52 Score=48.02 Aligned_cols=92 Identities=17% Similarity=0.190 Sum_probs=61.2
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCC----hh-------hHHHHHHcCceecCCCcCCHHh
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG----SR-------SFAEARAAGFTEENGTLGDIYE 174 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~----s~-------s~~~A~~~G~~~~~~~~~s~~E 174 (417)
.++. .||.|+|.|.-|.++|+-|... |. +|++.++++ .+ ....++.... .....+++|
T Consensus 185 ~l~d-~kVVi~GAGaAG~~iA~ll~~~------Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~---~~~~~~L~e 254 (398)
T 2a9f_A 185 SLDE-VSIVVNGGGSAGLSITRKLLAA------GATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNR---EFKSGTLED 254 (398)
T ss_dssp CTTS-CEEEEECCSHHHHHHHHHHHHH------TCCEEEEEETTEECCTTCCCSCCC---CHHHHHSC---TTCCCSCSH
T ss_pred CCCc-cEEEEECCCHHHHHHHHHHHHc------CCCeEEEEECCCcccCCccccchHHHHHHhhccCc---ccchhhHHH
Confidence 3444 6999999999999999999998 88 888887752 11 1122332110 111356899
Q ss_pred hcCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 175 TISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 175 a~~~ADIViLavpd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
+++++|++|=+..|.... +++...|+++.+|...
T Consensus 255 av~~ADV~IG~Sapgl~T---~EmVk~Ma~~pIIfal 288 (398)
T 2a9f_A 255 ALEGADIFIGVSAPGVLK---AEWISKMAARPVIFAM 288 (398)
T ss_dssp HHHTTCSEEECCSTTCCC---HHHHHTSCSSCEEEEC
T ss_pred HhccCCEEEecCCCCCCC---HHHHHhhCCCCEEEEC
Confidence 999999988775443321 2455668888887743
|
| >2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A | Back alignment and structure |
|---|
Probab=89.88 E-value=0.68 Score=47.37 Aligned_cols=36 Identities=19% Similarity=0.130 Sum_probs=30.2
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHh-hhhhhcCCcEEE-EEec
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRD-SLAEAKSDIVVK-VGLR 148 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~-s~~~~~~G~~Vi-Vg~r 148 (417)
..++| ++|+|.|+|++|...++.|.+ . |..|+ +.+.
T Consensus 205 ~~l~g-~~vaVqG~GnVG~~~a~~L~e~~------GakvVavsD~ 242 (415)
T 2tmg_A 205 IDPKK-ATVAVQGFGNVGQFAALLISQEL------GSKVVAVSDS 242 (415)
T ss_dssp CCTTT-CEEEEECCSHHHHHHHHHHHHTT------CCEEEEEECS
T ss_pred CCcCC-CEEEEECCcHHHHHHHHHHHHhc------CCEEEEEEeC
Confidence 46889 999999999999999999988 7 88776 4443
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=89.76 E-value=0.61 Score=44.86 Aligned_cols=91 Identities=20% Similarity=0.243 Sum_probs=57.2
Q ss_pred cCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec-CCCcCCHHh----hc--CcCC
Q 014834 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYE----TI--SGSD 180 (417)
Q Consensus 109 ~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~-~~~~~s~~E----a~--~~AD 180 (417)
.| ++|.|+|. |.+|.+.++.++.. |.+|++..++. ...+.+++.|.... |-...+..+ .. ...|
T Consensus 145 ~g-~~vlV~Ga~ggiG~~~~~~a~~~------G~~Vi~~~~~~-~~~~~~~~~g~~~~~d~~~~~~~~~i~~~~~~~~~d 216 (333)
T 1wly_A 145 PG-DYVLIHAAAGGMGHIMVPWARHL------GATVIGTVSTE-EKAETARKLGCHHTINYSTQDFAEVVREITGGKGVD 216 (333)
T ss_dssp TT-CEEEETTTTSTTHHHHHHHHHHT------TCEEEEEESSH-HHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEE
T ss_pred CC-CEEEEECCccHHHHHHHHHHHHC------CCEEEEEeCCH-HHHHHHHHcCCCEEEECCCHHHHHHHHHHhCCCCCe
Confidence 46 89999995 99999999999998 99887776653 34556666664310 111112222 22 2478
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 181 IViLavpd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
+||-++... .++.....++++-.++..
T Consensus 217 ~vi~~~g~~----~~~~~~~~l~~~G~iv~~ 243 (333)
T 1wly_A 217 VVYDSIGKD----TLQKSLDCLRPRGMCAAY 243 (333)
T ss_dssp EEEECSCTT----THHHHHHTEEEEEEEEEC
T ss_pred EEEECCcHH----HHHHHHHhhccCCEEEEE
Confidence 999888763 344445556666555443
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=89.74 E-value=0.92 Score=42.48 Aligned_cols=90 Identities=8% Similarity=0.005 Sum_probs=54.2
Q ss_pred hhhccCCCEEEEEcc-cc--hHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCE
Q 014834 105 PDAFNGINQIGVIGW-GS--QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDL 181 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~-G~--mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADI 181 (417)
+..++| |+|-|.|. |. +|.++|+.|.+. |.+|++..|.. ..+..++. .+...+..+
T Consensus 21 M~~l~~-k~vlVTGasg~~GIG~~ia~~l~~~------G~~V~~~~r~~--~~~~~~~l------------~~~~~~~~~ 79 (280)
T 3nrc_A 21 MGFLAG-KKILITGLLSNKSIAYGIAKAMHRE------GAELAFTYVGQ--FKDRVEKL------------CAEFNPAAV 79 (280)
T ss_dssp -CTTTT-CEEEECCCCSTTCHHHHHHHHHHHT------TCEEEEEECTT--CHHHHHHH------------HGGGCCSEE
T ss_pred ccccCC-CEEEEECCCCCCCHHHHHHHHHHHc------CCEEEEeeCch--HHHHHHHH------------HHhcCCceE
Confidence 466888 99999996 56 999999999999 99988877764 11111111 000111222
Q ss_pred EEEccCC-chHHHHHHHHHhcCCCCcEEEEecCch
Q 014834 182 VLLLISD-AAQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 182 ViLavpd-~~~~~Vl~eI~~~lk~gaiLi~a~G~~ 215 (417)
+.+=+.+ ....++++++.....+=.+|+..+|+.
T Consensus 80 ~~~Dl~~~~~v~~~~~~~~~~~g~id~li~nAg~~ 114 (280)
T 3nrc_A 80 LPCDVISDQEIKDLFVELGKVWDGLDAIVHSIAFA 114 (280)
T ss_dssp EECCTTCHHHHHHHHHHHHHHCSSCCEEEECCCCC
T ss_pred EEeecCCHHHHHHHHHHHHHHcCCCCEEEECCccC
Confidence 2222333 344567777766554334678888863
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=89.68 E-value=0.49 Score=45.59 Aligned_cols=92 Identities=14% Similarity=0.170 Sum_probs=60.0
Q ss_pred cCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHH-HcCceec-CCC-cCCHHhhc-----CcC
Q 014834 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEE-NGT-LGDIYETI-----SGS 179 (417)
Q Consensus 109 ~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~-~~G~~~~-~~~-~~s~~Ea~-----~~A 179 (417)
.| ++|.|+|. |.+|.+.++.++.. |.+|++..++. ...+.++ +.|.... |-. ..+..+.+ ...
T Consensus 155 ~g-~~vlI~Ga~g~iG~~~~~~a~~~------G~~V~~~~~~~-~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~ 226 (345)
T 2j3h_A 155 EG-ETVYVSAASGAVGQLVGQLAKMM------GCYVVGSAGSK-EKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGI 226 (345)
T ss_dssp TT-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEESSH-HHHHHHHHTSCCSEEEETTSCSCSHHHHHHHCTTCE
T ss_pred CC-CEEEEECCCcHHHHHHHHHHHHC------CCEEEEEeCCH-HHHHHHHHHcCCceEEecCCHHHHHHHHHHHhCCCC
Confidence 46 89999997 99999999999988 99887766653 3455665 5675310 100 01222222 257
Q ss_pred CEEEEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 180 DIViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
|+||-++.. +.++.....++++-.++..+
T Consensus 227 d~vi~~~g~----~~~~~~~~~l~~~G~~v~~G 255 (345)
T 2j3h_A 227 DIYFENVGG----KMLDAVLVNMNMHGRIAVCG 255 (345)
T ss_dssp EEEEESSCH----HHHHHHHTTEEEEEEEEECC
T ss_pred cEEEECCCH----HHHHHHHHHHhcCCEEEEEc
Confidence 999998864 24556666777766655443
|
| >3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A* | Back alignment and structure |
|---|
Probab=89.55 E-value=1.5 Score=43.43 Aligned_cols=83 Identities=19% Similarity=0.134 Sum_probs=46.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC-ChhhHHHHHH----cC------------ceecCC------C
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARA----AG------------FTEENG------T 168 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~-~s~s~~~A~~----~G------------~~~~~~------~ 168 (417)
.||||+|+|.+|+.+.+.|.+.. +.+++|+..++. +........+ .| +.. ++ .
T Consensus 3 ikVgI~G~G~IGr~v~r~l~~~~---~~~~evvaInd~~~~~~~~~l~~~ds~~G~~~~~v~~~~~~l~v-~g~~i~v~~ 78 (339)
T 3b1j_A 3 IRVAINGFGRIGRNFLRCWFGRQ---NTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITV-NGKTMKIVC 78 (339)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCS---CCSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEE-TTEEEEEEC
T ss_pred eEEEEECCCHHHHHHHHHHHhcC---CCCeEEEEEecCCCHHHHHHHhccccccCCCCCcEEEcCCeeee-cCceEEEEe
Confidence 58999999999999999987640 114665433332 2221111111 11 100 11 0
Q ss_pred cCCHHhhc---CcCCEEEEccCCchHHHHHHHH
Q 014834 169 LGDIYETI---SGSDLVLLLISDAAQADNYEKI 198 (417)
Q Consensus 169 ~~s~~Ea~---~~ADIViLavpd~~~~~Vl~eI 198 (417)
..+++++- .++|+||.|++-....+.....
T Consensus 79 ~~dp~~l~w~~~~vDvV~e~tg~~~s~e~a~~~ 111 (339)
T 3b1j_A 79 DRNPLNLPWKEWDIDLVIESTGVFVTAEGASKH 111 (339)
T ss_dssp CSCGGGSCTTTTTCCEEEECSSSCCBHHHHHHH
T ss_pred cCChHHCcccccCCCEEEECCCccccHHHHHHH
Confidence 12444432 2789999999987776666543
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=89.41 E-value=0.93 Score=43.79 Aligned_cols=93 Identities=18% Similarity=0.167 Sum_probs=59.0
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec-CCCcCCHHh----hcC--cCC
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYE----TIS--GSD 180 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~-~~~~~s~~E----a~~--~AD 180 (417)
-.| .+|.|+|.|.+|...++-++.. .|.+|++..++ +...+.+++.|.... +.. .+..+ ... ..|
T Consensus 170 ~~g-~~vlv~GaG~vG~~a~qla~~~-----g~~~Vi~~~~~-~~~~~~~~~lGa~~~i~~~-~~~~~~v~~~t~g~g~d 241 (345)
T 3jv7_A 170 GPG-STAVVIGVGGLGHVGIQILRAV-----SAARVIAVDLD-DDRLALAREVGADAAVKSG-AGAADAIRELTGGQGAT 241 (345)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHH-----CCCEEEEEESC-HHHHHHHHHTTCSEEEECS-TTHHHHHHHHHGGGCEE
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc-----CCCEEEEEcCC-HHHHHHHHHcCCCEEEcCC-CcHHHHHHHHhCCCCCe
Confidence 346 8999999999999999888766 03466655554 455788888886431 100 12222 222 689
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 181 IViLavpd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
+||-++.... .++.....++++-.++..
T Consensus 242 ~v~d~~G~~~---~~~~~~~~l~~~G~iv~~ 269 (345)
T 3jv7_A 242 AVFDFVGAQS---TIDTAQQVVAVDGHISVV 269 (345)
T ss_dssp EEEESSCCHH---HHHHHHHHEEEEEEEEEC
T ss_pred EEEECCCCHH---HHHHHHHHHhcCCEEEEE
Confidence 9999998752 344444556666655544
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=89.39 E-value=1.5 Score=42.59 Aligned_cols=90 Identities=10% Similarity=0.050 Sum_probs=60.0
Q ss_pred cCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChh---hHHHHHHcCceecCCCcCC--------HHhhc
Q 014834 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR---SFAEARAAGFTEENGTLGD--------IYETI 176 (417)
Q Consensus 109 ~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~---s~~~A~~~G~~~~~~~~~s--------~~Ea~ 176 (417)
.| .+|.|+|. |.+|...++-++.. |.++++..+..+. ..+.+++.|... +.+ ..+..
T Consensus 167 ~g-~~VlV~Ga~G~vG~~aiqlak~~------Ga~vi~~~~~~~~~~~~~~~~~~lGa~~----vi~~~~~~~~~~~~~~ 235 (357)
T 1zsy_A 167 PG-DSVIQNASNSGVGQAVIQIAAAL------GLRTINVVRDRPDIQKLSDRLKSLGAEH----VITEEELRRPEMKNFF 235 (357)
T ss_dssp TT-CEEEESSTTSHHHHHHHHHHHHH------TCEEEEEECCCSCHHHHHHHHHHTTCSE----EEEHHHHHSGGGGGTT
T ss_pred CC-CEEEEeCCcCHHHHHHHHHHHHc------CCEEEEEecCccchHHHHHHHHhcCCcE----EEecCcchHHHHHHHH
Confidence 46 89999998 99999999999888 9877666554322 346777888642 112 12222
Q ss_pred C---cCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 014834 177 S---GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 177 ~---~ADIViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~G 213 (417)
. ..|+||-++..... .+....++++-.++..++
T Consensus 236 ~~~~~~Dvvid~~g~~~~----~~~~~~l~~~G~iv~~G~ 271 (357)
T 1zsy_A 236 KDMPQPRLALNCVGGKSS----TELLRQLARGGTMVTYGG 271 (357)
T ss_dssp SSSCCCSEEEESSCHHHH----HHHHTTSCTTCEEEECCC
T ss_pred hCCCCceEEEECCCcHHH----HHHHHhhCCCCEEEEEec
Confidence 2 37999999874333 234567787776665543
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} | Back alignment and structure |
|---|
Probab=89.35 E-value=1.2 Score=45.40 Aligned_cols=83 Identities=24% Similarity=0.161 Sum_probs=53.8
Q ss_pred ccccccchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCh---------------h-----hHHHH
Q 014834 98 RDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS---------------R-----SFAEA 157 (417)
Q Consensus 98 ~~~f~~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s---------------~-----s~~~A 157 (417)
.|..+..+..-.+ ++|.|||.|.-|.+.|..|++. |++|++..+.+. + ..+..
T Consensus 110 ~~~~~~~~~~~~~-~~V~IIGgGpAGl~aA~~L~~~------G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l 182 (456)
T 2vdc_G 110 GWVKPRTPSRELG-LSVGVIGAGPAGLAAAEELRAK------GYEVHVYDRYDRMGGLLVYGIPGFKLEKSVVERRVKLL 182 (456)
T ss_dssp TCCCCCCSCSSCC-CCEEEECCSHHHHHHHHHHHHH------TCCEEEECSSSSCSTHHHHTSCTTTSCHHHHHHHHHHH
T ss_pred CCCCCCCCcCCCC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEeccCCCCCeeeecCCCccCCHHHHHHHHHHH
Confidence 3554433233456 8999999999999999999999 999888865421 1 11334
Q ss_pred HHcCceecCCCc----CCHHhhcCcCCEEEEccC
Q 014834 158 RAAGFTEENGTL----GDIYETISGSDLVLLLIS 187 (417)
Q Consensus 158 ~~~G~~~~~~~~----~s~~Ea~~~ADIViLavp 187 (417)
++.|+....++. .+.++.....|.|||++-
T Consensus 183 ~~~gv~~~~~~~v~~~v~~~~~~~~~d~vvlAtG 216 (456)
T 2vdc_G 183 ADAGVIYHPNFEVGRDASLPELRRKHVAVLVATG 216 (456)
T ss_dssp HHTTCEEETTCCBTTTBCHHHHHSSCSEEEECCC
T ss_pred HHCCcEEEeCCEeccEEEhhHhHhhCCEEEEecC
Confidence 556765321111 134455467999999864
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 417 | ||||
| d1qmga2 | 226 | c.2.1.6 (A:82-307) Class II ketol-acid reductoisom | 9e-94 | |
| d1qmga1 | 288 | a.100.1.2 (A:308-595) Class II ketol-acid reductoi | 8e-50 | |
| d1np3a2 | 182 | c.2.1.6 (A:1-182) Class I ketol-acid reductoisomer | 3e-41 | |
| d1np3a1 | 145 | a.100.1.2 (A:183-327) Class I ketol-acid reductois | 1e-23 |
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Score = 279 bits (715), Expect = 9e-94
Identities = 189/226 (83%), Positives = 210/226 (92%)
Query: 68 TPFLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQA 127
+ DF++SVFKK+ ++L+ DE+IVRGGR+LF LLPDAF GI QIGVIGWGSQ PAQA
Sbjct: 1 SATTFDFDSSVFKKEKVTLSGHDEYIVRGGRNLFPLLPDAFKGIKQIGVIGWGSQAPAQA 60
Query: 128 QNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187
QNL+DSL EAKSD+VVK+GLRKGS SFAEARAAGF+EENGTLGD++ETISGSDLVLLLIS
Sbjct: 61 QNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLIS 120
Query: 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRL 247
D+AQADNYEK+FS MKPNSILGLSHGFLLGHLQS+G DFPKNI VIAVCPKGMGPSVRRL
Sbjct: 121 DSAQADNYEKVFSHMKPNSILGLSHGFLLGHLQSLGQDFPKNISVIAVCPKGMGPSVRRL 180
Query: 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATT 293
YVQGKE+NGAGINSSFAVHQDVDGRAT+VALGWS+ALGSPFTFATT
Sbjct: 181 YVQGKEVNGAGINSSFAVHQDVDGRATDVALGWSIALGSPFTFATT 226
|
| >d1qmga1 a.100.1.2 (A:308-595) Class II ketol-acid reductoisomerase {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 288 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Acetohydroxy acid isomeroreductase (ketol-acid reductoisomerase, KARI) domain: Class II ketol-acid reductoisomerase species: Spinach (Spinacia oleracea) [TaxId: 3562]
Score = 168 bits (426), Expect = 8e-50
Identities = 100/116 (86%), Positives = 109/116 (93%)
Query: 294 LEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVECITGIISKIISTQ 353
LEQEYKSDIFGERGILLGAVHGIVE LFRR+TE+GMSEDLAYKNTVECITG+ISK IST+
Sbjct: 1 LEQEYKSDIFGERGILLGAVHGIVECLFRRYTESGMSEDLAYKNTVECITGVISKTISTK 60
Query: 354 GMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFY 409
GMLA+YNS S E KK+F+ AYSASYYP M+ILYECYEDVA+GSEIRSVVLAGRRFY
Sbjct: 61 GMLALYNSLSEEGKKDFQAAYSASYYPSMDILYECYEDVASGSEIRSVVLAGRRFY 116
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Score = 142 bits (359), Expect = 3e-41
Identities = 56/175 (32%), Positives = 89/175 (50%), Gaps = 20/175 (11%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
++ +IG+GSQG A A NL+D S + V VGLR GS + A+A A G D+
Sbjct: 18 KVAIIGYGSQGHAHACNLKD------SGVDVTVGLRSGSATVAKAEAHGLKV-----ADV 66
Query: 173 YETISGSDLVLLLISDAAQADNYEKIF-SCMKPNSILGLSHGFLLGHLQSIGLDFPKNIG 231
++ +D+V++L D Q Y++ +K + L +HGF + + Q ++
Sbjct: 67 KTAVAAADVVMILTPDEFQGRLYKEEIEPNLKKGATLAFAHGFSIHYNQV---VPRADLD 123
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS 286
VI + PK G +VR +V+G I A++QD G A NVAL ++ +G
Sbjct: 124 VIMIAPKAPGHTVRSEFVKGGG-----IPDLIAIYQDASGNAKNVALSYACGVGG 173
|
| >d1np3a1 a.100.1.2 (A:183-327) Class I ketol-acid reductoisomerase {Pseudomonas aeruginosa [TaxId: 287]} Length = 145 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Acetohydroxy acid isomeroreductase (ketol-acid reductoisomerase, KARI) domain: Class I ketol-acid reductoisomerase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 93.8 bits (233), Expect = 1e-23
Identities = 21/122 (17%), Positives = 46/122 (37%)
Query: 295 EQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVECITGIISKIISTQG 354
+ E ++D+FGE+ +L G +V++ F E G + ++AY + + I+ +
Sbjct: 2 KDETETDLFGEQAVLCGGCVELVKAGFETLVEAGYAPEMAYFECLHELKLIVDLMYEGGI 61
Query: 355 MLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYVSSYR 414
Y+ + + E+ + + + G + + G Y S
Sbjct: 62 ANMNYSISNNAEYGEYVTGPEVINAESRAAMRNALKRIQDGEYAKMFITEGAANYPSMTA 121
Query: 415 LR 416
R
Sbjct: 122 YR 123
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 417 | |||
| d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 100.0 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 100.0 | |
| d1np3a1 | 145 | Class I ketol-acid reductoisomerase {Pseudomonas a | 99.93 | |
| d1qmga1 | 288 | Class II ketol-acid reductoisomerase {Spinach (Spi | 99.92 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 99.88 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 99.86 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 99.79 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 99.78 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.56 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 99.53 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 99.51 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.47 | |
| d1qmga1 | 288 | Class II ketol-acid reductoisomerase {Spinach (Spi | 99.45 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 99.37 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 99.35 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 99.31 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 99.17 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 99.17 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 99.1 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 99.09 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 99.05 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 99.01 | |
| d1yqga1 | 111 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 99.0 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 98.99 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 98.96 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 98.95 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 98.93 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 98.93 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 98.91 | |
| d2ahra1 | 104 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 98.81 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 98.77 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 98.75 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 98.71 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 98.61 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 98.49 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 98.48 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 98.37 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 98.32 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 98.16 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 98.13 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 98.01 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 98.01 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 97.98 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.9 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 97.89 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 97.68 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 97.56 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 97.47 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 97.45 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 97.44 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 97.44 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 97.43 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 97.4 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 97.39 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.34 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 97.33 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 97.32 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 97.32 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 97.3 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 97.29 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 97.27 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 97.26 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 97.23 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 97.18 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 97.17 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 97.17 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 97.17 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.14 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 97.13 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 97.13 | |
| d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 97.07 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 97.06 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 97.03 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 97.02 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 97.01 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.99 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 96.93 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.92 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 96.75 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 96.75 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 96.75 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 96.71 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 96.71 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 96.67 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.67 | |
| d1mv8a3 | 136 | GDP-mannose 6-dehydrogenase, GDP-binding domain {P | 96.63 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.61 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 96.61 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 96.57 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 96.48 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 96.48 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 96.48 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 96.4 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 96.38 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 96.31 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 96.15 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.09 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 96.08 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 96.04 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 96.01 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.0 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 95.97 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 95.95 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 95.88 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 95.87 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.74 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 95.72 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 95.68 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 95.65 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 95.6 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.59 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 95.59 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 95.56 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 95.49 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 95.45 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 95.36 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 95.36 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 95.27 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 95.27 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 95.26 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.24 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 94.99 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 94.98 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 94.94 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 94.8 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 94.69 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 94.49 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 94.45 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 94.38 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 94.35 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 94.31 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 94.26 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 94.24 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 94.12 | |
| d1pg5a2 | 153 | Aspartate carbamoyltransferase catalytic subunit { | 94.0 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 93.99 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 93.86 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 93.83 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 93.73 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 93.68 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 93.53 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 93.33 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 93.31 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 93.28 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 93.27 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 93.26 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 93.24 | |
| d1vlva2 | 161 | Ornithine transcarbamoylase {Thermotoga maritima [ | 93.19 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 93.16 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 93.13 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 93.07 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 93.06 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 93.06 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 93.03 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 92.82 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 92.63 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 92.45 | |
| d1pvva2 | 163 | Ornithine transcarbamoylase {Archaeon Pyrococcus f | 92.32 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 92.31 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 92.31 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 92.27 | |
| d1dxha2 | 185 | Ornithine transcarbamoylase {Pseudomonas aeruginos | 92.16 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 92.05 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 92.0 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 91.87 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 91.86 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 91.85 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 91.82 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 91.79 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 91.77 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 91.69 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 91.55 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 91.42 | |
| d1otha2 | 170 | Ornithine transcarbamoylase {Human (Homo sapiens) | 91.42 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 91.24 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 91.18 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 91.17 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 91.16 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 91.05 | |
| d1ml4a2 | 157 | Aspartate carbamoyltransferase catalytic subunit { | 91.05 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 91.02 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 91.0 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 90.99 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 90.98 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 90.94 | |
| d2h1qa1 | 251 | Hypothetical protein Dhaf_3308 {Desulfitobacterium | 90.9 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 90.89 | |
| d1duvg2 | 183 | Ornithine transcarbamoylase {Escherichia coli [Tax | 90.76 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 90.69 | |
| d1euca1 | 130 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 90.67 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 90.67 | |
| d2at2a2 | 151 | Aspartate carbamoyltransferase catalytic subunit { | 90.57 | |
| d2nu7a1 | 119 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 90.49 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 90.46 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 90.45 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 90.3 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 90.25 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 90.1 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 89.63 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 89.5 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 89.25 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 89.18 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 88.54 | |
| d1oi7a1 | 121 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 88.49 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 88.37 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 88.05 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 88.04 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 88.01 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 88.01 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 87.95 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 87.91 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 87.74 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 87.7 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 87.67 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 87.64 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 87.6 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 87.59 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 87.21 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 87.1 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 87.06 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 87.02 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 87.01 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 86.92 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 86.68 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 86.68 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 86.56 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 86.44 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 86.42 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 86.37 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 86.14 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 85.82 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 85.76 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 85.49 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 85.4 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 85.35 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 85.13 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 85.09 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 84.91 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 84.86 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 84.4 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 84.21 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 84.1 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 84.1 | |
| d1ekxa2 | 160 | Aspartate carbamoyltransferase catalytic subunit { | 83.93 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 83.86 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 83.69 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 83.51 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 83.3 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 81.87 | |
| d1vl6a1 | 222 | Malate oxidoreductase (malic enzyme) {Thermotoga m | 81.52 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 81.32 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 81.25 | |
| d1dlja3 | 108 | UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD | 80.83 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 80.41 |
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=100.00 E-value=6.8e-57 Score=421.73 Aligned_cols=225 Identities=84% Similarity=1.312 Sum_probs=211.6
Q ss_pred ccccccccccchHhhhhhcccchhhhcccccccccchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEec
Q 014834 69 PFLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (417)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~e~~vr~g~~~f~~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r 148 (417)
+++++||+++|++++++|+|++|+|+++|||+|++++++|+|+|||+|||||+||+|+|+|||||..+.++|++|+|++|
T Consensus 2 ~~~~~f~~~~~~~~~~~~~~~~e~i~~~~r~~f~~~~~~~kg~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr 81 (226)
T d1qmga2 2 ATTFDFDSSVFKKEKVTLSGHDEYIVRGGRNLFPLLPDAFKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLR 81 (226)
T ss_dssp CSCCCCCCSSSCCEEEEETTEEEEEEECCGGGGGGHHHHTTTCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEEC
T ss_pred CccccchheeeEEEEEeeCCceeEEEecccchhhhhHHHhcCCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeC
Confidence 56799999999999999999999999999999999999999999999999999999999999998444445788999999
Q ss_pred CChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCC
Q 014834 149 KGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPK 228 (417)
Q Consensus 149 ~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~ 228 (417)
.++++|++|+++||.+.+.++.+++|++++||+|++++||+.|.++|++|.|+|++|++|.++|||+++|.....+.+|+
T Consensus 82 ~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiLlPDe~Q~~vy~~I~p~Lk~G~~L~FaHGFnI~~~~~~~~~~p~ 161 (226)
T d1qmga2 82 KGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLISDSAQADNYEKVFSHMKPNSILGLSHGFLLGHLQSLGQDFPK 161 (226)
T ss_dssp TTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEECSCHHHHHHHHHHHHHHSCTTCEEEESSSHHHHHHHHHTCCCCT
T ss_pred CCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEecchHHHHHHHHHHHHhcCCCceeeecchhhhhhceeeecccCC
Confidence 99999999999999865566778999999999999999999999999999999999999999999999887755567899
Q ss_pred CccEEEeccCCCchhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCCceeccc
Q 014834 229 NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATT 293 (417)
Q Consensus 229 dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~~~iett 293 (417)
|++|+||+||+||+.||++|++|+.++|.|+|++++++||.||++++++++|+.++|+.++||||
T Consensus 162 dvdVimVAPKgPGh~VR~~Y~~Gk~~~G~GVP~LiAV~QD~sG~A~~~alayA~aIG~g~~~eTt 226 (226)
T d1qmga2 162 NISVIAVCPKGMGPSVRRLYVQGKEVNGAGINSSFAVHQDVDGRATDVALGWSIALGSPFTFATT 226 (226)
T ss_dssp TSEEEEEEESSCHHHHHHHHHHHTTTTCCCCCEEEEEEECSSSCHHHHHHHHHHHHTCSEEEECC
T ss_pred CceEEEECCCCCCchHHHHHHcccccCCCCceeEEEEEECCCCcHHHHHHHHHHhCCCCceeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999986
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=2.2e-42 Score=313.62 Aligned_cols=169 Identities=36% Similarity=0.581 Sum_probs=161.0
Q ss_pred hhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
.+.|++ |+|+|||||+||+++|+||||| |++|+|++|+++++|++|++.||. +.+++|++++||+|++
T Consensus 11 l~~ik~-k~IaViGYGsQG~AhAlNLrDS------G~~V~VGLr~gs~s~~~A~~~Gf~-----v~~~~eA~~~aDiim~ 78 (182)
T d1np3a2 11 LSIIQG-KKVAIIGYGSQGHAHACNLKDS------GVDVTVGLRSGSATVAKAEAHGLK-----VADVKTAVAAADVVMI 78 (182)
T ss_dssp HHHHHT-SCEEEECCSHHHHHHHHHHHHT------TCCEEEECCTTCHHHHHHHHTTCE-----EECHHHHHHTCSEEEE
T ss_pred hHHHCC-CEEEEEeeCcHhHHHHhhhhhc------CCCEEEEcCCCCccHHHHhhhccc-----cccHHHHhhhcCeeee
Confidence 478899 9999999999999999999999 999999999999999999999999 5799999999999999
Q ss_pred ccCCchHHHHHH-HHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEE
Q 014834 185 LISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (417)
Q Consensus 185 avpd~~~~~Vl~-eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~li 263 (417)
++||..|.++|+ +|.|+|++|++|.|+|||+++|. .+.||++++|++|+||+||+.||++|++| +|+|+++
T Consensus 79 L~PD~~q~~vy~~~I~p~lk~g~~L~FaHGfnIh~~---~I~pp~~vdV~mvAPKgpG~~VR~~y~~G-----~Gvp~l~ 150 (182)
T d1np3a2 79 LTPDEFQGRLYKEEIEPNLKKGATLAFAHGFSIHYN---QVVPRADLDVIMIAPKAPGHTVRSEFVKG-----GGIPDLI 150 (182)
T ss_dssp CSCHHHHHHHHHHHTGGGCCTTCEEEESCCHHHHTT---SSCCCTTCEEEEEEESSCSHHHHHHHHTT-----CCCCEEE
T ss_pred ecchHHHHHHHHHhhhhhcCCCcEEEEeccceEEee---eeecCCCCceEeeccccccchhHHHhhcC-----CccceEE
Confidence 999999999997 69999999999999999999775 47999999999999999999999999996 8999999
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCCc--eeccc
Q 014834 264 AVHQDVDGRATNVALGWSVALGSPF--TFATT 293 (417)
Q Consensus 264 av~~dvsgea~e~a~~L~~alG~~~--~iett 293 (417)
+++||.||++++++++|+.++|+.| +|+||
T Consensus 151 AV~qD~sg~A~~~alayA~~iG~~raGvi~TT 182 (182)
T d1np3a2 151 AIYQDASGNAKNVALSYACGVGGGRTGIIETT 182 (182)
T ss_dssp EEEECSSSCHHHHHHHHHHHTTHHHHCEEECC
T ss_pred EEEeCCCccHHHHHHHHHHHhCcCccceEecC
Confidence 9999999999999999999999987 78875
|
| >d1np3a1 a.100.1.2 (A:183-327) Class I ketol-acid reductoisomerase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Acetohydroxy acid isomeroreductase (ketol-acid reductoisomerase, KARI) domain: Class I ketol-acid reductoisomerase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.93 E-value=5.6e-27 Score=206.89 Aligned_cols=116 Identities=19% Similarity=0.368 Sum_probs=108.3
Q ss_pred hhhhhhhhccccchhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhcccCchhhhhhhh
Q 014834 294 LEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKA 373 (417)
Q Consensus 294 f~~e~~~dl~ge~t~L~G~~pA~iea~~d~~v~~Gl~~e~A~~~~~q~~~~g~~~li~e~G~~~l~~~vss~~~~~~~~~ 373 (417)
|++|+++||||||++|||+++++++++|+.+|++|++|+.||++|+|+++ +|+++|+++|+.+|+++|| +|++||+|
T Consensus 1 F~~E~~sDlfgEq~vL~Ggv~~~~~~~fe~lve~G~~pe~Ay~e~~he~~-lI~~li~~~Gl~~m~~~iS--dTAeyG~y 77 (145)
T d1np3a1 1 FKDETETDLFGEQAVLCGGCVELVKAGFETLVEAGYAPEMAYFECLHELK-LIVDLMYEGGIANMNYSIS--NNAEYGEY 77 (145)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTTHH-HHHHHHHHHHHHHHHHHSC--HHHHHHHH
T ss_pred CcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHccc-hhHHHHHHHhHHHHHHHhc--cHHHHHHH
Confidence 78899999999999999999999999999999999999999999999997 9999999999999999999 89999998
Q ss_pred hhc---cChhHHHHHHHHHHhhccChHHHHHHHcCCcccccc
Q 014834 374 YSA---SYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYVSS 412 (417)
Q Consensus 374 ~~~---~~~~~~~~m~~~~~~v~~g~~~~~~~~~~~~~~~~~ 412 (417)
..+ -+.++++.|+++|++||+|+|+|+|+.+++..+++.
T Consensus 78 ~~~~~~~~~~~k~~mk~~l~~IqsG~fak~~i~e~~~~~~~l 119 (145)
T d1np3a1 78 VTGPEVINAESRAAMRNALKRIQDGEYAKMFITEGAANYPSM 119 (145)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHTTHHHHHHHHHHHTTSHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHH
Confidence 433 367899999999999999999999999998877653
|
| >d1qmga1 a.100.1.2 (A:308-595) Class II ketol-acid reductoisomerase {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Acetohydroxy acid isomeroreductase (ketol-acid reductoisomerase, KARI) domain: Class II ketol-acid reductoisomerase species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=99.92 E-value=2.6e-26 Score=221.46 Aligned_cols=123 Identities=80% Similarity=1.225 Sum_probs=115.2
Q ss_pred hhhhhhhhccccchhhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhcccCchhhhhhhh
Q 014834 294 LEQEYKSDIFGERGILLGAVHGIVESLFRRFTENGMSEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKA 373 (417)
Q Consensus 294 f~~e~~~dl~ge~t~L~G~~pA~iea~~d~~v~~Gl~~e~A~~~~~q~~~~g~~~li~e~G~~~l~~~vss~~~~~~~~~ 373 (417)
|++|+++||||||++|||+++++++++|+.++++|++|++||++++|+++|.|+++|+++||.+||+.+|++++..|-+.
T Consensus 1 f~~E~~SDl~GEq~iL~G~~~~~~~~~f~~l~~~G~~p~~Ay~etvee~t~~I~~lI~~~Gi~~My~~lS~~ak~~~~~~ 80 (288)
T d1qmga1 1 LEQEYKSDIFGERGILLGAVHGIVECLFRRYTESGMSEDLAYKNTVECITGVISKTISTKGMLALYNSLSEEGKKDFQAA 80 (288)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHTTCCHHHHHHTTHHHHHTHHHHHHHHTCHHHHHHTSCHHHHHHHHHH
T ss_pred CchHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhChHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999998887777777
Q ss_pred hhccChhHHHHHHHHHHhhccChHHHHHHHcCCcc-cccccccc
Q 014834 374 YSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRF-YVSSYRLR 416 (417)
Q Consensus 374 ~~~~~~~~~~~m~~~~~~v~~g~~~~~~~~~~~~~-~~~~~~~~ 416 (417)
+...++|++++|+++|++|+||+|+|+||++++|+ |++.+.||
T Consensus 81 ~~~~~~~~kpvf~e~yddV~SG~eak~vi~a~~r~dyre~L~~~ 124 (288)
T d1qmga1 81 YSASYYPSMDILYECYEDVASGSEIRSVVLAGRRFYEKEGLPAF 124 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTSCBTTBCCC
T ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHHHcCCccchHHhcchh
Confidence 77678999999999999999999999999987775 88888875
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.88 E-value=6.9e-23 Score=180.33 Aligned_cols=146 Identities=16% Similarity=0.140 Sum_probs=125.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~~ 191 (417)
|||||||+|+||.+++++|.++ |+++++++|+.++..+.+++.|+.. +.+++|++++||+|||++||+..
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~------~~~i~v~~r~~~~~~~l~~~~g~~~----~~~~~~~~~~~dvIilavkp~~~ 70 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQT------PHELIISGSSLERSKEIAEQLALPY----AMSHQDLIDQVDLVILGIKPQLF 70 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTS------SCEEEEECSSHHHHHHHHHHHTCCB----CSSHHHHHHTCSEEEECSCGGGH
T ss_pred CEEEEEeccHHHHHHHHHHHhC------CCeEEEEcChHHhHHhhccccceee----echhhhhhhccceeeeecchHhH
Confidence 6899999999999999999998 9999999888666667777888876 67899999999999999999887
Q ss_pred HHHHHHHHhcCCCCcE-EEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeecCCCC
Q 014834 192 ADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (417)
Q Consensus 192 ~~Vl~eI~~~lk~gai-Li~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~dvs 270 (417)
.++++ .++++++ +++++|+++..+++ .++++.+++|+|||+|..+ |.|++. ++....++
T Consensus 71 ~~vl~----~l~~~~~iis~~agi~~~~l~~---~l~~~~~ivr~mPN~~~~v------------~~g~~~-~~~~~~~~ 130 (152)
T d2ahra2 71 ETVLK----PLHFKQPIISMAAGISLQRLAT---FVGQDLPLLRIMPNMNAQI------------LQSSTA-LTGNALVS 130 (152)
T ss_dssp HHHHT----TSCCCSCEEECCTTCCHHHHHH---HHCTTSCEEEEECCGGGGG------------TCEEEE-EEECTTCC
T ss_pred HHHhh----hcccceeEecccccccHHHHHh---hhcccccchhhccchhhhc------------CccceE-EEeCCCCC
Confidence 76654 4667775 45899999988776 5567789999999999988 678888 66688899
Q ss_pred HHHHHHHHHHHHHhCCC
Q 014834 271 GRATNVALGWSVALGSP 287 (417)
Q Consensus 271 gea~e~a~~L~~alG~~ 287 (417)
.+..+.++.++..+|..
T Consensus 131 ~~~~~~v~~l~~~~G~~ 147 (152)
T d2ahra2 131 QELQARVRDLTDSFGST 147 (152)
T ss_dssp HHHHHHHHHHHHTTEEE
T ss_pred HHHHHHHHHHHHhCCCE
Confidence 99999999999999954
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=99.86 E-value=6.8e-22 Score=173.14 Aligned_cols=146 Identities=15% Similarity=0.249 Sum_probs=120.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC-cEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G-~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~ 190 (417)
|||||||+|+||.+++++|.++ | ++|.+++|+.++..+.+++.|+.. ..+. +.+.++|+|||++||+.
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~------~~~~i~v~~r~~~~~~~l~~~~~~~~----~~~~-~~v~~~Div~lavkP~~ 69 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQ------GGYRIYIANRGAEKRERLEKELGVET----SATL-PELHSDDVLILAVKPQD 69 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------CSCEEEEECSSHHHHHHHHHHTCCEE----ESSC-CCCCTTSEEEECSCHHH
T ss_pred CEEEEEcCcHHHHHHHHHHHHC------CCCcEEEEeCChhHHHHhhhhccccc----cccc-ccccccceEEEecCHHH
Confidence 6899999999999999999988 7 788888887666666677788875 3444 44678999999999988
Q ss_pred HHHHHHHHHhcCCCCcE-EEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeecCCC
Q 014834 191 QADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (417)
Q Consensus 191 ~~~Vl~eI~~~lk~gai-Li~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~dv 269 (417)
..++++++.+ .+++ |++++|+++..+++ .++.+.+++|+|||+|... |+|++. ++...+.
T Consensus 70 ~~~v~~~l~~---~~~~viS~~ag~~~~~l~~---~l~~~~~iir~mpn~p~~~------------~~g~t~-~~~~~~~ 130 (152)
T d1yqga2 70 MEAACKNIRT---NGALVLSVAAGLSVGTLSR---YLGGTRRIVRVMPNTPGKI------------GLGVSG-MYAEAEV 130 (152)
T ss_dssp HHHHHTTCCC---TTCEEEECCTTCCHHHHHH---HTTSCCCEEEEECCGGGGG------------TCEEEE-EECCTTS
T ss_pred HHHhHHHHhh---cccEEeecccCCCHHHHHH---HhCcCcceEeecccchhHh------------cCCcEE-EEeCCCC
Confidence 8888776643 3454 56899999988876 6677778999999999988 689998 6668888
Q ss_pred CHHHHHHHHHHHHHhCCC
Q 014834 270 DGRATNVALGWSVALGSP 287 (417)
Q Consensus 270 sgea~e~a~~L~~alG~~ 287 (417)
++++.+.++.||..+|..
T Consensus 131 ~~~~~~~v~~l~~~~G~~ 148 (152)
T d1yqga2 131 SETDRRIADRIMKSVGLT 148 (152)
T ss_dssp CHHHHHHHHHHHHTTEEE
T ss_pred CHHHHHHHHHHHHhCCCE
Confidence 999999999999999953
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.79 E-value=2.8e-19 Score=157.45 Aligned_cols=161 Identities=14% Similarity=0.114 Sum_probs=123.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhHHHHHHcCceecCCCcCCHHh-hcCcCCEEEEccC
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE-TISGSDLVLLLIS 187 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~E-a~~~ADIViLavp 187 (417)
||||+|||+|+||.++|++|+++ |+ +|+ +.+.+....+.+++.|+.. ....+..+ ...++|+|++|+|
T Consensus 1 Mk~I~IIG~G~mG~sla~~L~~~------g~~~~I~-~~D~~~~~~~~a~~~~~~~--~~~~~~~~~~~~~~dlIila~p 71 (171)
T d2g5ca2 1 MQNVLIVGVGFMGGSFAKSLRRS------GFKGKIY-GYDINPESISKAVDLGIID--EGTTSIAKVEDFSPDFVMLSSP 71 (171)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHT------TCCSEEE-EECSCHHHHHHHHHTTSCS--EEESCGGGGGGTCCSEEEECSC
T ss_pred CCEEEEEccCHHHHHHHHHHHhc------CCCeEEE-EEECChHHHHHHHHhhcch--hhhhhhhhhhccccccccccCC
Confidence 78999999999999999999998 86 554 4455567788899998752 22344443 4468999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecCchh---hhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEe
Q 014834 188 DAAQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~gaiLi~a~G~~i---~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~lia 264 (417)
++...++++++.++++++++|+++++... ..++. .+++ ++|..||- +|.. ...++.+++....|.+++++
T Consensus 72 ~~~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~---~~~~--~~i~~hPm-~G~e-~sG~~~a~~~Lf~g~~~il~ 144 (171)
T d2g5ca2 72 VRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLEN---ILGK--RFVGGHPI-AGTE-KSGVEYSLDNLYEGKKVILT 144 (171)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHH---HHGG--GEECEEEE-CCCS-CCSGGGCCSSTTTTCEEEEC
T ss_pred chhhhhhhhhhhccccccccccccccccHHHHHHHHH---hhcc--cccccccc-cccc-cccHHHHHHHhhCCCeEEEe
Confidence 99999999999999999999999998643 23332 2233 69999993 3332 12344555555678889999
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCC
Q 014834 265 VHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 265 v~~dvsgea~e~a~~L~~alG~~ 287 (417)
++...+.++++.++.+++.+|+.
T Consensus 145 p~~~~~~~~~~~v~~~~~~lG~~ 167 (171)
T d2g5ca2 145 PTKKTDKKRLKLVKRVWEDVGGV 167 (171)
T ss_dssp CCSSSCHHHHHHHHHHHHHTTCE
T ss_pred cCCCCCHHHHHHHHHHHHHcCCE
Confidence 99999999999999999999964
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=99.78 E-value=7.2e-19 Score=154.64 Aligned_cols=161 Identities=15% Similarity=0.113 Sum_probs=120.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~~ 191 (417)
|||||||+|+||.++|++|+++ |++|++++|+ ....+.+.+.|+.. . ..+..+++++||+||+++|+...
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~------g~~V~~~d~~-~~~~~~a~~~~~~~--~-~~~~~~~~~~~DiIilavp~~~~ 70 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRR------GHYLIGVSRQ-QSTCEKAVERQLVD--E-AGQDLSLLQTAKIIFLCTPIQLI 70 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTSCS--E-EESCGGGGTTCSEEEECSCHHHH
T ss_pred CEEEEEeecHHHHHHHHHHHHC------CCEEEEEECC-chHHHHHHHhhccc--e-eeeecccccccccccccCcHhhh
Confidence 6899999999999999999999 9999876654 55678888888752 1 34556789999999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeecCCCCH
Q 014834 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDG 271 (417)
Q Consensus 192 ~~Vl~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~dvsg 271 (417)
.++++++.++++++++|+++++........ ..... .+++..||...... ..+..+......|.++++++....+.
T Consensus 71 ~~vl~~l~~~l~~~~iv~~~~s~~~~~~~~-~~~~~--~~~~~~h~~~~~~~--~g~~~a~~~l~~~~~~il~~~~~~~~ 145 (165)
T d2f1ka2 71 LPTLEKLIPHLSPTAIVTDVASVKTAIAEP-ASQLW--SGFIGGHPMAGTAA--QGIDGAEENLFVNAPYVLTPTEYTDP 145 (165)
T ss_dssp HHHHHHHGGGSCTTCEEEECCSCCHHHHHH-HHHHS--TTCEEEEECCCCSC--SSGGGCCTTTTTTCEEEEEECTTCCH
T ss_pred hhhhhhhhhhcccccceeeccccchHHHHH-HHHhh--cccccceeeecccc--cchhhhcccccCCCeEEEEeCCCCCH
Confidence 999999999999999999888764321111 00111 25778888543211 11222222333567888888888899
Q ss_pred HHHHHHHHHHHHhCCC
Q 014834 272 RATNVALGWSVALGSP 287 (417)
Q Consensus 272 ea~e~a~~L~~alG~~ 287 (417)
++.+.+..+++.+|+.
T Consensus 146 ~~~~~v~~l~~~lG~~ 161 (165)
T d2f1ka2 146 EQLACLRSVLEPLGVK 161 (165)
T ss_dssp HHHHHHHHHHGGGTCE
T ss_pred HHHHHHHHHHHHhCCE
Confidence 9999999999999963
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.56 E-value=7.1e-15 Score=129.05 Aligned_cols=148 Identities=18% Similarity=0.217 Sum_probs=106.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~~ 191 (417)
|||||||+|+||.+||++|.++ |++|++++|+. +..+...+.|... ..++.|+++++|+||+++|+..+
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~------G~~V~~~d~~~-~~~~~~~~~~~~~----~~~~~e~~~~~d~ii~~v~~~~~ 69 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKA------GYSLVVSDRNP-EAIADVIAAGAET----ASTAKAIAEQCDVIITMLPNSPH 69 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT------TCEEEEECSCH-HHHHHHHHTTCEE----CSSHHHHHHHCSEEEECCSSHHH
T ss_pred CEEEEEehhHHHHHHHHHHHHC------CCeEEEEeCCc-chhHHHHHhhhhh----cccHHHHHhCCCeEEEEcCCHHH
Confidence 5899999999999999999999 99998887764 4456667778876 68899999999999999997666
Q ss_pred H-HHH---HHHHhcCCCCcEEEEecCchhh---hhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEe
Q 014834 192 A-DNY---EKIFSCMKPNSILGLSHGFLLG---HLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (417)
Q Consensus 192 ~-~Vl---~eI~~~lk~gaiLi~a~G~~i~---~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~lia 264 (417)
. +++ +.+.+.+++|++|++.+-.... .+.+ .....+++++-....+ ++. .-+. |-..++
T Consensus 70 v~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~--~~~~~g~~~vdapv~g-g~~---~a~~-------g~l~~~- 135 (161)
T d1vpda2 70 VKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISD--ALKAKGVEMLDAPVSG-GEP---KAID-------GTLSVM- 135 (161)
T ss_dssp HHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHH--HHHTTTCEEEECCEES-HHH---HHHH-------TCEEEE-
T ss_pred HHHHHhCCcchhhccCCCCEEEECCCCCHHHHHHHHH--HHHHcCCceecccccC-Chh---HHhc-------CCeEEE-
Confidence 4 566 3588999999999988765432 2221 1224567887653322 111 1122 232322
Q ss_pred ecCCCCHHHHHHHHHHHHHhCC
Q 014834 265 VHQDVDGRATNVALGWSVALGS 286 (417)
Q Consensus 265 v~~dvsgea~e~a~~L~~alG~ 286 (417)
+.. +.++.+.++.+++.+|.
T Consensus 136 ~gG--~~~~~~~~~~il~~~~~ 155 (161)
T d1vpda2 136 VGG--DKAIFDKYYDLMKAMAG 155 (161)
T ss_dssp EES--CHHHHHHHHHHHHTTEE
T ss_pred EcC--CHHHHHHHHHHHHHhcC
Confidence 233 46889999999999985
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=99.53 E-value=4.5e-14 Score=122.09 Aligned_cols=143 Identities=16% Similarity=0.120 Sum_probs=106.2
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCc
Q 014834 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (417)
Q Consensus 111 mkkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~ 189 (417)
|+||+||| +|+||.+||++|+++ |++|.++++.... +.++.+.++|++++++|+.
T Consensus 9 ~~kI~iIGg~G~mG~~la~~L~~~------G~~V~~~d~~~~~------------------~~~~~~~~~~~v~~~~~~~ 64 (152)
T d2pv7a2 9 IHKIVIVGGYGKLGGLFARYLRAS------GYPISILDREDWA------------------VAESILANADVVIVSVPIN 64 (152)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTT------TCCEEEECTTCGG------------------GHHHHHTTCSEEEECSCGG
T ss_pred CCeEEEEcCCCHHHHHHHHHHHHc------CCCcEeccccccc------------------ccchhhhhccccccccchh
Confidence 48999999 999999999999999 9999988775322 2345678899999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeecCCC
Q 014834 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (417)
Q Consensus 190 ~~~~Vl~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~dv 269 (417)
...+++.++.++++++++|++.++++....+......+ .++|..||.. |+.. .+ -.|-..++++..
T Consensus 65 ~~~~v~~~~~~~~~~~~iiiD~~Svk~~~~~~~~~~~~--~~~v~~hP~~-Gp~~-----~~----~~g~~~v~~~g~-- 130 (152)
T d2pv7a2 65 LTLETIERLKPYLTENMLLADLTSVKREPLAKMLEVHT--GAVLGLHPMF-GADI-----AS----MAKQVVVRCDGR-- 130 (152)
T ss_dssp GHHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHHCS--SEEEEEEECS-CTTC-----SC----CTTCEEEEEEEE--
T ss_pred hheeeeecccccccCCceEEEecccCHHHHHHHHHHcc--CCEEEecccC-CCcc-----cc----cCCcEEEEecCC--
Confidence 99999999999999999999999886322221111233 3689999943 4431 11 145555556554
Q ss_pred CHHHHHHHHHHHHHhCCCceecc
Q 014834 270 DGRATNVALGWSVALGSPFTFAT 292 (417)
Q Consensus 270 sgea~e~a~~L~~alG~~~~iet 292 (417)
+.++.+.++.++..+|+ +++||
T Consensus 131 ~~~~~~~~~~ll~~~Ga-~v~et 152 (152)
T d2pv7a2 131 FPERYEWLLEQIQIWGA-KIYQT 152 (152)
T ss_dssp CGGGTHHHHHHHHHTTC-EEEEC
T ss_pred CHHHHHHHHHHHHHhCC-EEEeC
Confidence 34678889999999996 45553
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=99.51 E-value=1.3e-15 Score=131.66 Aligned_cols=143 Identities=13% Similarity=0.080 Sum_probs=89.2
Q ss_pred EEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCchHHH
Q 014834 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD 193 (417)
Q Consensus 114 IgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~~~~ 193 (417)
|||||+|+||.+|+++|++. +..+.|++|+.++..+.+.+.+.. ..+++|+++++|+||+|+||.++.+
T Consensus 2 IgfIG~G~mg~~l~~~L~~~------~~~~~v~~R~~~~~~~l~~~~~~~-----~~~~~~~~~~~DiVil~v~d~~i~~ 70 (153)
T d2i76a2 2 LNFVGTGTLTRFFLECLKDR------YEIGYILSRSIDRARNLAEVYGGK-----AATLEKHPELNGVVFVIVPDRYIKT 70 (153)
T ss_dssp CEEESCCHHHHHHHHTTC----------CCCEECSSHHHHHHHHHHTCCC-----CCSSCCCCC---CEEECSCTTTHHH
T ss_pred EEEEeCcHHHHHHHHHHHhC------CCEEEEEeCChhhhcchhhccccc-----ccchhhhhccCcEEEEeccchhhhH
Confidence 79999999999999999775 544457888877766676666654 5678899999999999999999888
Q ss_pred HHHHHHhcCCCCcEEEEecC-chhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEEeecCCCCHH
Q 014834 194 NYEKIFSCMKPNSILGLSHG-FLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGR 272 (417)
Q Consensus 194 Vl~eI~~~lk~gaiLi~a~G-~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~liav~~dvsge 272 (417)
+++++. +++++|+++++ .++..++. .....+||..+.......... ..+.++ ++.. +.+
T Consensus 71 v~~~l~---~~~~ivi~~s~~~~~~~l~~--------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~--~~~g--d~~ 130 (153)
T d2i76a2 71 VANHLN---LGDAVLVHCSGFLSSEIFKK--------SGRASIHPNFSFSSLEKALEM-----KDQIVF--GLEG--DER 130 (153)
T ss_dssp HHTTTC---CSSCCEEECCSSSCGGGGCS--------SSEEEEEECSCC--CTTGGGC-----GGGCCE--EECC--CTT
T ss_pred HHhhhc---ccceeeeecccchhhhhhhh--------hccccceeeeecccccchhhh-----ccCcEE--EEeC--CHH
Confidence 876653 46888876655 44433321 122334443321110000011 122333 3344 347
Q ss_pred HHHHHHHHHHHhCCC
Q 014834 273 ATNVALGWSVALGSP 287 (417)
Q Consensus 273 a~e~a~~L~~alG~~ 287 (417)
+.+.++.|+..+|+.
T Consensus 131 ~~~~~~~l~~~lG~~ 145 (153)
T d2i76a2 131 GLPIVKKIAEEISGK 145 (153)
T ss_dssp THHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHCCc
Confidence 889999999999975
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.47 E-value=3.3e-13 Score=118.44 Aligned_cols=149 Identities=18% Similarity=0.248 Sum_probs=108.6
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~ 190 (417)
|+||||||+|+||.+||++|.++ |++|.+++|..+ ..+.+...|... ..++.|+++++|+|++++|+..
T Consensus 1 M~kIg~IGlG~MG~~iA~~L~~~------g~~v~~~d~~~~-~~~~~~~~~~~~----~~~~~e~~~~~diii~~v~~~~ 69 (162)
T d3cuma2 1 MKQIAFIGLGHMGAPMATNLLKA------GYLLNVFDLVQS-AVDGLVAAGASA----ARSARDAVQGADVVISMLPASQ 69 (162)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHT------TCEEEEECSSHH-HHHHHHHTTCEE----CSSHHHHHTSCSEEEECCSCHH
T ss_pred CCEEEEEEEHHHHHHHHHHHHHC------CCeEEEEECchh-hhhhhhhhhccc----cchhhhhccccCeeeecccchh
Confidence 78999999999999999999999 999998887644 456677788876 6789999999999999999877
Q ss_pred HH-HHHH---HHHhcCCCCcEEEEecCchhh---hhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEE
Q 014834 191 QA-DNYE---KIFSCMKPNSILGLSHGFLLG---HLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (417)
Q Consensus 191 ~~-~Vl~---eI~~~lk~gaiLi~a~G~~i~---~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~li 263 (417)
.. +++. .+.+.+++|+++++.+-.... .+.+ ....++++++- +|-.-++. .-++ |-..++
T Consensus 70 ~~~~v~~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~--~~~~~gi~~~d-apv~Gg~~---~a~~-------G~l~~~ 136 (162)
T d3cuma2 70 HVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHA--AARERGLAMLD-APVSGGTA---GAAA-------GTLTFM 136 (162)
T ss_dssp HHHHHHHSTTCHHHHSCTTCEEEECSCCCHHHHHHHHH--HHHHTTCEEEE-CCEESCHH---HHHH-------TCEEEE
T ss_pred hHHHHHhccccccccCCCCCEEEECCCCCHHHHHHHHH--HHHHCCCcEEe-cccccCcc---cccc-------CCeEEE
Confidence 65 4664 378889999999988876432 2221 12235677775 45333332 1223 333323
Q ss_pred eecCCCCHHHHHHHHHHHHHhCC
Q 014834 264 AVHQDVDGRATNVALGWSVALGS 286 (417)
Q Consensus 264 av~~dvsgea~e~a~~L~~alG~ 286 (417)
. .. +.++.+.++.++..+|.
T Consensus 137 ~-gG--~~~~~~~~~~il~~~~~ 156 (162)
T d3cuma2 137 V-GG--DAEALEKARPLFEAMGR 156 (162)
T ss_dssp E-ES--CHHHHHHHHHHHHHHEE
T ss_pred e-cC--CHHHHHHHHHHHHHHcC
Confidence 2 33 45789999999999985
|
| >d1qmga1 a.100.1.2 (A:308-595) Class II ketol-acid reductoisomerase {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Acetohydroxy acid isomeroreductase (ketol-acid reductoisomerase, KARI) domain: Class II ketol-acid reductoisomerase species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=99.45 E-value=1.7e-14 Score=138.53 Aligned_cols=93 Identities=10% Similarity=0.120 Sum_probs=81.2
Q ss_pred hchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH-HHHHhcHHHHHhcccCchhhhhhhh-hhccChhHHHHHHH
Q 014834 310 LGAVHGIVESLFRRFTENGMSEDLAYKNTVECITGIISK-IISTQGMLAVYNSFSGEDKKEFEKA-YSASYYPCMEILYE 387 (417)
Q Consensus 310 ~G~~pA~iea~~d~~v~~Gl~~e~A~~~~~q~~~~g~~~-li~e~G~~~l~~~vss~~~~~~~~~-~~~~~~~~~~~m~~ 387 (417)
.|.+.+++.|.||.++++|++|++||++++|++. .|.. ||+++|+.+|+++|| +||+||++ +..+.+ ..+|++
T Consensus 158 ~g~~~~~~~a~~e~l~~~G~~~~~a~~E~~~E~~-~~~~~li~~~g~~~M~~~~S--~TA~~G~~~~~prf~--~~~~~~ 232 (288)
T d1qmga1 158 AGVYVALMMAQIEILRKKGHSYSEIINESVIEAV-DSLNPFMHARGVSFMVDNCS--TTARLGSRKWAPRFD--YILSQQ 232 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCHHHHHHHHTHHHH-HTTHHHHHHHHHHHHHTTSC--HHHHHHHHHHHHHHH--HHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHHhccHHHHHHHhh--HHHHcccccchhhhh--HHHHHH
Confidence 6888899999999999999999999999999999 5555 999999999999999 89999997 332321 246799
Q ss_pred HHHhhccChHHHHHHHcCCc
Q 014834 388 CYEDVAAGSEIRSVVLAGRR 407 (417)
Q Consensus 388 ~~~~v~~g~~~~~~~~~~~~ 407 (417)
+|++||+|.||++||.+|..
T Consensus 233 ~l~~i~~G~~a~~~l~en~~ 252 (288)
T d1qmga1 233 ALVAVDNGAPINQDLISNFL 252 (288)
T ss_dssp HHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHhcCChHHHHHHHHhcc
Confidence 99999999999999988753
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.37 E-value=8.2e-13 Score=114.44 Aligned_cols=90 Identities=20% Similarity=0.241 Sum_probs=72.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhh-HHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s-~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~ 190 (417)
+||||||+|+||.++|++|+++ |++|+++++..++. ...+...++. .++.|+++++|+||+++|+..
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~------g~~v~~~~~~~~~~~~~~~~~~~~~------~~~~e~~~~~diIi~~v~~~~ 68 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSR------GVEVVTSLEGRSPSTIERARTVGVT------ETSEEDVYSCPVVISAVTPGV 68 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHT------TCEEEECCTTCCHHHHHHHHHHTCE------ECCHHHHHTSSEEEECSCGGG
T ss_pred CEEEEEcHHHHHHHHHHHHHHC------CCeEEEEcCchhHHHHHhhhccccc------ccHHHHHhhcCeEEEEecCch
Confidence 5899999999999999999999 99998887664433 3344444443 478899999999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCch
Q 014834 191 QADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 191 ~~~Vl~eI~~~lk~gaiLi~a~G~~ 215 (417)
..+++.++.+.+ ++++++++...
T Consensus 69 ~~~~~~~~~~~~--~~~~id~st~~ 91 (152)
T d1i36a2 69 ALGAARRAGRHV--RGIYVDINNIS 91 (152)
T ss_dssp HHHHHHHHHTTC--CSEEEECSCCC
T ss_pred HHHHHHhhcccC--CceeeccCcCC
Confidence 999988888776 56777776553
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=99.35 E-value=2.2e-12 Score=112.83 Aligned_cols=96 Identities=20% Similarity=0.203 Sum_probs=78.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec-----------CCCcCCHHhhcCcCC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-----------NGTLGDIYETISGSD 180 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~-----------~~~~~s~~Ea~~~AD 180 (417)
|||+|||+|+||.++|..|.++ |++|.+++|.. ...+...+.|.... .....++.|+++++|
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~------G~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD 74 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALK------GQSVLAWDIDA-QRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDAD 74 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCH-HHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCS
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCEEEEEECCH-HHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCC
Confidence 8999999999999999999999 99999888764 34455555442210 001357899999999
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 181 IViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
+||+++|...+.+++++|+++++++++|+.+.|.
T Consensus 75 ~iii~v~~~~~~~~~~~i~~~l~~~~~iv~~~g~ 108 (184)
T d1bg6a2 75 VILIVVPAIHHASIAANIASYISEGQLIILNPGA 108 (184)
T ss_dssp EEEECSCGGGHHHHHHHHGGGCCTTCEEEESSCC
T ss_pred EEEEEEchhHHHHHHHHhhhccCCCCEEEEeCCC
Confidence 9999999999999999999999999998888775
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=99.31 E-value=3.1e-12 Score=113.44 Aligned_cols=152 Identities=15% Similarity=0.044 Sum_probs=102.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec----CCCcCCHHhhcCcCCEEEEccC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE----NGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~----~~~~~s~~Ea~~~ADIViLavp 187 (417)
.+|||||+|+||.+||++|.+. |++|++++|+.++..+ ..+.+.... ...+.++.+++..+|++++++|
T Consensus 3 ~nIg~IGlG~MG~~mA~~L~~~------G~~V~v~dr~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~ 75 (176)
T d2pgda2 3 ADIALIGLAVMGQNLILNMNDH------GFVVCAFNRTVSKVDD-FLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVK 75 (176)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSTHHHHH-HHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSC
T ss_pred CcEEEEeEhHHHHHHHHHHHHC------CCeEEEEcCCHHHHHH-HHHhccccccccchhhhhhhhhhhcccceEEEecC
Confidence 6799999999999999999999 9999999887665443 334433210 0113456688899999999999
Q ss_pred CchH-HHHHHHHHhcCCCCcEEEEecCchhh---hhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceEEE
Q 014834 188 DAAQ-ADNYEKIFSCMKPNSILGLSHGFLLG---HLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (417)
Q Consensus 188 d~~~-~~Vl~eI~~~lk~gaiLi~a~G~~i~---~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~li 263 (417)
+... .++++++.+.+++|+++++.+-.... .+.+ .....++.++- +|-.-+.. .-+. |. .++
T Consensus 76 ~~~~v~~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~--~~~~~g~~~ld-apvsGg~~---~A~~-------G~-~~~ 141 (176)
T d2pgda2 76 AGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCR--DLKDKGILFVG-SGVSGGED---GARY-------GP-SLM 141 (176)
T ss_dssp TTHHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHH--HHHHTTCEEEE-EEEESHHH---HHHH-------CC-EEE
T ss_pred chHHHHHHHHHHHhccccCcEEEecCcchhHHHHHHHH--HHHhcCCceec-cccccCcc---cccC-------Cc-EEE
Confidence 8655 57888999999999999988765432 1211 12234666663 34222222 1122 34 323
Q ss_pred eecCCCCHHHHHHHHHHHHHhCCC
Q 014834 264 AVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 264 av~~dvsgea~e~a~~L~~alG~~ 287 (417)
+.. +.+..+.++.++..+|..
T Consensus 142 -~gG--~~~~~~~~~~il~~~~~k 162 (176)
T d2pgda2 142 -PGG--NKEAWPHIKAIFQGIAAK 162 (176)
T ss_dssp -EEE--CTTTHHHHHHHHHHHSCB
T ss_pred -cCC--CHHHHHHHHHHHHHHhcc
Confidence 343 235788899999999864
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=4.1e-10 Score=101.59 Aligned_cols=152 Identities=15% Similarity=0.180 Sum_probs=114.1
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHH-----------HHcCceec------------C-
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEE------------N- 166 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A-----------~~~G~~~~------------~- 166 (417)
++||+|||.|.||.++|..+... |++|++++++.+ ..+.+ .+.|.... +
T Consensus 4 IkkvaViGaG~mG~~iA~~~a~~------G~~V~l~D~~~~-~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 76 (192)
T d1f0ya2 4 VKHVTVIGGGLMGAGIAQVAAAT------GHTVVLVDQTED-ILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLST 76 (192)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHH-HHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHT
T ss_pred eEEEEEECcCHHHHHHHHHHHhC------CCcEEEEECChH-HHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhh
Confidence 48999999999999999999999 999998877532 22211 11222100 0
Q ss_pred -CCcCCHHhhcCcCCEEEEccCCchH--HHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCch
Q 014834 167 -GTLGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGP 242 (417)
Q Consensus 167 -~~~~s~~Ea~~~ADIViLavpd~~~--~~Vl~eI~~~lk~gaiLi-~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~ 242 (417)
....+..+++++||+|+=++|.... .++|.+|.+.++++++|. -++++.+..+.. .....-+++..|+--|.+
T Consensus 77 i~~~~d~~~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~---~~~~p~r~ig~HffnP~~ 153 (192)
T d1f0ya2 77 IATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIAN---ATTRQDRFAGLHFFNPVP 153 (192)
T ss_dssp EEEESCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHT---TSSCGGGEEEEEECSSTT
T ss_pred ccccchhHhhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcccccchhhh---hccCHhHEEeeccccccC
Confidence 0145778899999999999997665 369999999999999876 667788877665 333344899999988887
Q ss_pred hHHHHHhhcccccCCCceEE-EeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 243 SVRRLYVQGKEINGAGINSS-FAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 243 ~vr~ly~~G~~~~G~Gv~~l-iav~~dvsgea~e~a~~L~~alG~~ 287 (417)
. ++.+ +.++...+++..+.+.+++..+|..
T Consensus 154 ~---------------~~lVEIv~g~~T~~~~i~~~~~~~~~lgk~ 184 (192)
T d1f0ya2 154 V---------------MKLVEVIKTPMTSQKTFESLVDFSKALGKH 184 (192)
T ss_dssp T---------------CCEEEEECCTTCCHHHHHHHHHHHHHTTCE
T ss_pred c---------------ccEEEEcCCCCCCHHHHHHHHHHHHHcCCE
Confidence 6 2221 5667788899999999999999964
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.17 E-value=2.5e-10 Score=101.63 Aligned_cols=97 Identities=19% Similarity=0.196 Sum_probs=74.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCh-hhHHHHHHcCceec-----C----CCcCCHHhhcCcCCE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEE-----N----GTLGDIYETISGSDL 181 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s-~s~~~A~~~G~~~~-----~----~~~~s~~Ea~~~ADI 181 (417)
|||+|||.|+||.++|..|.++ |++|.++.|... ...+.-.+...... . ....+++++++++|+
T Consensus 1 MkI~ViGaG~~GtalA~~la~~------g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~ 74 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDN------GNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEV 74 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHH------CCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccch
Confidence 6999999999999999999999 999998877422 22222222111000 0 013567899999999
Q ss_pred EEEccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 182 ViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
|++++|.+...++++++.+++++..+|+.+.|.
T Consensus 75 Ii~avps~~~~~~~~~l~~~l~~~~ii~~tkg~ 107 (180)
T d1txga2 75 VLLGVSTDGVLPVMSRILPYLKDQYIVLISKGL 107 (180)
T ss_dssp EEECSCGGGHHHHHHHHTTTCCSCEEEECCCSE
T ss_pred hhcccchhhhHHHHHhhccccccceecccccCc
Confidence 999999999999999999999888777777775
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.10 E-value=1.6e-10 Score=100.23 Aligned_cols=91 Identities=12% Similarity=0.152 Sum_probs=72.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~~ 191 (417)
.||||||+|+||.+||++|.+. |+.+ +++|..++..+...+.+... +..+.+.++|++|+++|+...
T Consensus 1 ekIg~IGlG~MG~~ma~~L~~~------g~~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~i~~~~~~~~ 67 (156)
T d2cvza2 1 EKVAFIGLGAMGYPMAGHLARR------FPTL-VWNRTFEKALRHQEEFGSEA------VPLERVAEARVIFTCLPTTRE 67 (156)
T ss_dssp CCEEEECCSTTHHHHHHHHHTT------SCEE-EECSSTHHHHHHHHHHCCEE------CCGGGGGGCSEEEECCSSHHH
T ss_pred CeEEEEeHHHHHHHHHHHHHhC------CCEE-EEeCCHHHHHHHHHHcCCcc------cccccccceeEEEecccchhh
Confidence 3799999999999999999988 8754 68888777666666656542 345667789999999998766
Q ss_pred H-HHHHHHHhcCCCCcEEEEecCch
Q 014834 192 A-DNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 192 ~-~Vl~eI~~~lk~gaiLi~a~G~~ 215 (417)
. .+...+.+.+++++++++.+-..
T Consensus 68 v~~~~~~l~~~~~~~~~iid~sT~~ 92 (156)
T d2cvza2 68 VYEVAEALYPYLREGTYWVDATSGE 92 (156)
T ss_dssp HHHHHHHHTTTCCTTEEEEECSCCC
T ss_pred hhhhhccccccccccccccccccCC
Confidence 4 56668999999999998777553
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=99.09 E-value=6.4e-10 Score=99.68 Aligned_cols=153 Identities=12% Similarity=0.125 Sum_probs=111.6
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH-----------cCceecC-------C-CcC
Q 014834 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEEN-------G-TLG 170 (417)
Q Consensus 110 gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~-----------~G~~~~~-------~-~~~ 170 (417)
.++||+|||.|.||.++|..+..+ |++|+++++..+ ..+.+.+ .+..... . ...
T Consensus 3 ~I~~vaViGaG~mG~~iA~~~a~~------G~~V~l~D~~~~-~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 75 (186)
T d1wdka3 3 DVKQAAVLGAGIMGGGIAYQSASK------GTPILMKDINEH-GIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPT 75 (186)
T ss_dssp CCSSEEEECCHHHHHHHHHHHHHT------TCCEEEECSSHH-HHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEE
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC------CCeEEEEECCHH-HHhhhhhhhhhhHHhhhcccccchhhhhhhhceeecc
Confidence 369999999999999999999999 999988876533 2222221 1111000 0 012
Q ss_pred CHHhhcCcCCEEEEccCCchHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHH
Q 014834 171 DIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRL 247 (417)
Q Consensus 171 s~~Ea~~~ADIViLavpd~~~~--~Vl~eI~~~lk~gaiLi-~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~l 247 (417)
+..+.+.+||+|+-++|..... ++|.+|.++.+++++|. -++++.+..+.. .....-+++..|+-.|.+.
T Consensus 76 ~~~~~~~~adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~~la~---~~~~p~r~~g~Hf~nP~~~---- 148 (186)
T d1wdka3 76 LSYGDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAK---ALKRPENFVGMHFFNPVHM---- 148 (186)
T ss_dssp SSSTTGGGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGG---GCSCGGGEEEEECCSSTTT----
T ss_pred cccccccccceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccHHHHHH---hccCchheEeeccccCccc----
Confidence 2234578999999999976653 69999999999999875 778888877765 3333458999999888877
Q ss_pred HhhcccccCCCceEE-EeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 248 YVQGKEINGAGINSS-FAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 248 y~~G~~~~G~Gv~~l-iav~~dvsgea~e~a~~L~~alG~~ 287 (417)
++.+ +.++...+++..+.+.+++..+|..
T Consensus 149 -----------~~lVEiv~~~~T~~~~~~~~~~~~~~lgk~ 178 (186)
T d1wdka3 149 -----------MPLVEVIRGEKSSDLAVATTVAYAKKMGKN 178 (186)
T ss_dssp -----------CCEEEEEECSSCCHHHHHHHHHHHHHTTCE
T ss_pred -----------CCeEEECCCCCCCHHHHHHHHHHHHHcCCE
Confidence 3332 4567788899999999999999964
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=99.05 E-value=1.7e-10 Score=103.69 Aligned_cols=101 Identities=11% Similarity=0.107 Sum_probs=79.8
Q ss_pred hcccccccccchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHH
Q 014834 94 VRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173 (417)
Q Consensus 94 vr~g~~~f~~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~ 173 (417)
+|+|+|........+.| ++|||||+|.+|..+++.++.. |.+|+++++.... ..... ..+++
T Consensus 26 ~~~~~w~~~~~~~~l~g-k~vgIiG~G~IG~~va~~l~~~------g~~v~~~d~~~~~-------~~~~~----~~~l~ 87 (181)
T d1qp8a1 26 MKRGDYGRDVEIPLIQG-EKVAVLGLGEIGTRVGKILAAL------GAQVRGFSRTPKE-------GPWRF----TNSLE 87 (181)
T ss_dssp HHTTCCCCCSCCCCCTT-CEEEEESCSTHHHHHHHHHHHT------TCEEEEECSSCCC-------SSSCC----BSCSH
T ss_pred HHcCCCCCCCCCCcccC-ceEEEeccccccccceeeeecc------ccccccccccccc-------cceee----eechh
Confidence 56788877665567999 9999999999999999999988 9999877664321 12221 45789
Q ss_pred hhcCcCCEEEEccCCchHH-HHHH-HHHhcCCCCcEEEEec
Q 014834 174 ETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSH 212 (417)
Q Consensus 174 Ea~~~ADIViLavpd~~~~-~Vl~-eI~~~lk~gaiLi~a~ 212 (417)
|++++||+|++++|..... .++. +.+..||+|++|+-++
T Consensus 88 ell~~sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~ 128 (181)
T d1qp8a1 88 EALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVG 128 (181)
T ss_dssp HHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECS
T ss_pred hhhhccchhhcccccccccccccccceeeeccccceEEecc
Confidence 9999999999999977654 4664 6888999999988443
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=99.01 E-value=2.8e-10 Score=103.28 Aligned_cols=110 Identities=20% Similarity=0.183 Sum_probs=83.6
Q ss_pred hhhccccccccc--------chhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCce
Q 014834 92 FIVRGGRDLFKL--------LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (417)
Q Consensus 92 ~~vr~g~~~f~~--------~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~ 163 (417)
..+|+|+|.... ...+|.| ++|||||+|++|..+|+.|+.. |++|+++++..... .....++.
T Consensus 23 ~~~~~g~w~~~~~~~~~~~~~~~eL~g-ktvgIiG~G~IG~~va~~l~~f------g~~v~~~d~~~~~~--~~~~~~~~ 93 (193)
T d1mx3a1 23 QALREGTRVQSVEQIREVASGAARIRG-ETLGIIGLGRVGQAVALRAKAF------GFNVLFYDPYLSDG--VERALGLQ 93 (193)
T ss_dssp HHHHTTCCCCSHHHHHHHTTTCCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECTTSCTT--HHHHHTCE
T ss_pred HHHHcCCcccccccccccccCceeeeC-ceEEEeccccccccceeeeecc------ccceeeccCccccc--chhhhccc
Confidence 346778886432 2377999 9999999999999999999987 99998777653332 23345666
Q ss_pred ecCCCcCCHHhhcCcCCEEEEccCCchHH-HHHH-HHHhcCCCCcEEE-EecCc
Q 014834 164 EENGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILG-LSHGF 214 (417)
Q Consensus 164 ~~~~~~~s~~Ea~~~ADIViLavpd~~~~-~Vl~-eI~~~lk~gaiLi-~a~G~ 214 (417)
. ..+++|++++||+|++++|..... .++. +.+..||+|++|+ .+-|-
T Consensus 94 ~----~~~l~~ll~~sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ 143 (193)
T d1mx3a1 94 R----VSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGG 143 (193)
T ss_dssp E----CSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTT
T ss_pred c----ccchhhccccCCEEEEeecccccchhhhhHHHHhccCCCCeEEecCCce
Confidence 4 568999999999999999976554 4554 5788999999988 44453
|
| >d1yqga1 a.100.1.10 (A:153-263) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: ProC C-terminal domain-like domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=99.00 E-value=4.5e-10 Score=93.69 Aligned_cols=66 Identities=8% Similarity=0.058 Sum_probs=61.7
Q ss_pred hhccccchhhhchHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcH--HHHHhcccCch
Q 014834 300 SDIFGERGILLGAVHG----IVESLFRRFTENGMSEDLAYKNTVECITGIISKIISTQGM--LAVYNSFSGED 366 (417)
Q Consensus 300 ~dl~ge~t~L~G~~pA----~iea~~d~~v~~Gl~~e~A~~~~~q~~~~g~~~li~e~G~--~~l~~~vss~~ 366 (417)
|+.|+..|+|+||+|| +++++.+.+++.|+++++|.+++.|++. |+++|+.+++. ..|+++||||.
T Consensus 2 E~~~d~~Tal~GSGPAy~~~~~ea~~~~~~~~Gl~~~~a~~lv~~~~~-Gs~~ll~~s~~~~~~L~~~V~Spg 73 (111)
T d1yqga1 2 EEKMHGITGISGSGPAYVFYLLDALQNAAIRQGFDMAEARALSLATFK-GAVALAEQTGEDFEKLQKNVTSKG 73 (111)
T ss_dssp TTHHHHHHHHTTSHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-HHHHHHHHHCCCHHHHHHHTCCTT
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-HHHHHHHhCCCCHHHHHhcccCcc
Confidence 5678888999999999 4889999999999999999999999999 99999999887 99999999995
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=98.99 E-value=1.1e-09 Score=96.39 Aligned_cols=153 Identities=16% Similarity=0.079 Sum_probs=98.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec------CCCcCCHHhhcCcCCEEEEc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE------NGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~------~~~~~s~~Ea~~~ADIViLa 185 (417)
|||||||+|+||.+||++|.++ |++|.+++|..++..+..++.+.... .....++-..+..++.++++
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~------G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEK------GFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALIL 75 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEEC
T ss_pred CEEEEEeehHHHHHHHHHHHHC------CCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEe
Confidence 6899999999999999999999 99999888876555444444332110 00011233456778888888
Q ss_pred cCCchH-HHHHHHHHhcCCCCcEEEEecCchhh---hhhhcccCCCCCccEEEeccCCCchhHHHHHhhcccccCCCceE
Q 014834 186 ISDAAQ-ADNYEKIFSCMKPNSILGLSHGFLLG---HLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINS 261 (417)
Q Consensus 186 vpd~~~-~~Vl~eI~~~lk~gaiLi~a~G~~i~---~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G~~~~G~Gv~~ 261 (417)
+++... ..++.++.+.+++++++++.+-.... .+.+ . .-.+++.++-. |-.-+. ...+. |.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~iii~~st~~~~~~~~~~~-~-l~~~~~~~lda-pv~g~~---~~a~~-------g~~~ 142 (178)
T d1pgja2 76 VQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQ-Q-LEAAGLRFLGM-GISGGE---EGARK-------GPAF 142 (178)
T ss_dssp CCCSHHHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHH-H-HHTTTCEEEEE-EEESHH---HHHHH-------CCEE
T ss_pred ecCcchhhhhhhhhhhhccccceecccCccchhHHHHHHH-H-HhhcceeEecc-cccCCc---chhcC-------CcEE
Confidence 887665 46888899999999998876644221 2222 1 12355666643 311111 12233 3433
Q ss_pred EEeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 262 SFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 262 liav~~dvsgea~e~a~~L~~alG~~ 287 (417)
+ +.. +.+..+.++.++..+|..
T Consensus 143 -m-vgG--~~~~~~~v~pil~~~~~~ 164 (178)
T d1pgja2 143 -F-PGG--TLSVWEEIRPIVEAAAAK 164 (178)
T ss_dssp -E-EEE--CHHHHHHHHHHHHHHSCB
T ss_pred -E-eeC--CHHHHHHHHHHHHHHhcc
Confidence 2 233 468999999999999964
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=98.96 E-value=7.1e-10 Score=100.91 Aligned_cols=106 Identities=16% Similarity=0.163 Sum_probs=79.2
Q ss_pred hcccccccccc-hhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCH
Q 014834 94 VRGGRDLFKLL-PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172 (417)
Q Consensus 94 vr~g~~~f~~~-~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~ 172 (417)
+++|+|.+... ..+|.| ++|||||+|++|..+|+.|+.. |++|+++++.... .....++. ..++
T Consensus 26 ~~~~~~~w~~~~g~el~g-k~vgIiG~G~IG~~va~~l~~f------g~~V~~~d~~~~~---~~~~~~~~-----~~~l 90 (197)
T d1j4aa1 26 VARHDLRWAPTIGREVRD-QVVGVVGTGHIGQVFMQIMEGF------GAKVITYDIFRNP---ELEKKGYY-----VDSL 90 (197)
T ss_dssp HHTTBCCCTTCCBCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCH---HHHHTTCB-----CSCH
T ss_pred HHhCCCCcCCCcCccccC-CeEEEecccccchhHHHhHhhh------cccccccCccccc---ccccceee-----eccc
Confidence 45665554332 378999 9999999999999999999887 9999877654322 12234554 4689
Q ss_pred HhhcCcCCEEEEccCCchHH-HHHH-HHHhcCCCCcEEE-EecCc
Q 014834 173 YETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILG-LSHGF 214 (417)
Q Consensus 173 ~Ea~~~ADIViLavpd~~~~-~Vl~-eI~~~lk~gaiLi-~a~G~ 214 (417)
++++++||+|++++|..... .++. +.+..||+|++|+ .+-|-
T Consensus 91 ~~~l~~sDii~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ 135 (197)
T d1j4aa1 91 DDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGP 135 (197)
T ss_dssp HHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGG
T ss_pred cccccccccccccCCccccccccccHHHHhhhCCccEEEecCchh
Confidence 99999999999999976653 4554 5778899999988 44453
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=98.95 E-value=6.6e-10 Score=100.07 Aligned_cols=152 Identities=15% Similarity=0.098 Sum_probs=93.9
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHc--------CceecCC--CcCCHHhhcC
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--------GFTEENG--TLGDIYETIS 177 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~--------G~~~~~~--~~~s~~Ea~~ 177 (417)
+.-|+||+|||+|+||.|+|..|.+. |++|.++.|+.+. .+.-.+. ++...+. ...+++++++
T Consensus 4 ~~~m~KI~ViGaG~wGtAlA~~La~~------g~~V~l~~r~~~~-~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~ 76 (189)
T d1n1ea2 4 LLYLNKAVVFGSGAFGTALAMVLSKK------CREVCVWHMNEEE-VRLVNEKRENVLFLKGVQLASNITFTSDVEKAYN 76 (189)
T ss_dssp CCCEEEEEEECCSHHHHHHHHHHHTT------EEEEEEECSCHHH-HHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHT
T ss_pred cceeceEEEECCCHHHHHHHHHHHHc------CCeEEEEEecHHH-HHHHhhcccccccccccccccccccchhhhhccC
Confidence 34458999999999999999999999 9999988775332 2222221 1211000 1457899999
Q ss_pred cCCEEEEccCCchHHHHHHHHHhc-----CCCCcE-EEEecCchh-------hhhhhcccCCCCCccEEEeccCCCchhH
Q 014834 178 GSDLVLLLISDAAQADNYEKIFSC-----MKPNSI-LGLSHGFLL-------GHLQSIGLDFPKNIGVIAVCPKGMGPSV 244 (417)
Q Consensus 178 ~ADIViLavpd~~~~~Vl~eI~~~-----lk~gai-Li~a~G~~i-------~~~~~~~i~~~~dv~VI~v~Pntpg~~v 244 (417)
++|+||+++|.+...++++++.++ ++++.. |+.+-|+.. ..+.+ .+|.+.-.+..-|+.+..+
T Consensus 77 ~ad~iiiavPs~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKGie~~t~~~~seii~e---~~~~~~~~vlsGP~~A~Ev- 152 (189)
T d1n1ea2 77 GAEIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGE---FLPSPLLSVLAGPSFAIEV- 152 (189)
T ss_dssp TCSCEEECSCHHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTT---TSCGGGEEEEESSCCHHHH-
T ss_pred CCCEEEEcCcHHHHHHHHHHHHhhhhhhhccCCcEEEEEECCCccCCccchhhHHHH---HhcccceEEEecCCcHHHH-
Confidence 999999999999999999887654 345554 445667732 12222 2344323345566554433
Q ss_pred HHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHH
Q 014834 245 RRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSV 282 (417)
Q Consensus 245 r~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~ 282 (417)
. +|.+..+.+.. .+.+..+.+.+++.
T Consensus 153 ----~-------~~~pt~~viAs-~~~~~a~~i~~lfs 178 (189)
T d1n1ea2 153 ----A-------TGVFTCVSIAS-ADINVARRLQRIMS 178 (189)
T ss_dssp ----H-------TTCCEEEEEEC-SSHHHHHHHHHHHS
T ss_pred ----H-------cCCCcEEEEEe-CCHHHHHHHHHHhC
Confidence 2 34555444433 24455555555554
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=98.93 E-value=1e-09 Score=99.31 Aligned_cols=111 Identities=17% Similarity=0.166 Sum_probs=82.1
Q ss_pred hhhccccccc----ccchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCC
Q 014834 92 FIVRGGRDLF----KLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG 167 (417)
Q Consensus 92 ~~vr~g~~~f----~~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~ 167 (417)
..+|.|+|.. ......+.| ++|||||+|++|..+|+.++.. |++|+++++......... ..+...
T Consensus 25 ~~~r~g~w~~~~~~~~~~~~l~g-~tvgIiG~G~IG~~va~~l~~f------g~~v~~~d~~~~~~~~~~-~~~~~~--- 93 (191)
T d1gdha1 25 KMIRTRSWPGWEPLELVGEKLDN-KTLGIYGFGSIGQALAKRAQGF------DMDIDYFDTHRASSSDEA-SYQATF--- 93 (191)
T ss_dssp HHHHTTCCCCCCTTTTCBCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECSSCCCHHHHH-HHTCEE---
T ss_pred HHHHcCCCCcCCccccccceecc-cceEEeecccchHHHHHHHHhh------ccccccccccccccchhh-cccccc---
Confidence 3467788852 222478889 9999999999999999999887 999887766433323333 334332
Q ss_pred CcCCHHhhcCcCCEEEEccCCchH-HHHHH-HHHhcCCCCcEEE-EecCc
Q 014834 168 TLGDIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILG-LSHGF 214 (417)
Q Consensus 168 ~~~s~~Ea~~~ADIViLavpd~~~-~~Vl~-eI~~~lk~gaiLi-~a~G~ 214 (417)
..++++++++||+|++++|-... ..++. +.+..||+|++|+ .+=|-
T Consensus 94 -~~~l~~ll~~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ 142 (191)
T d1gdha1 94 -HDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGD 142 (191)
T ss_dssp -CSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGG
T ss_pred -cCCHHHHHhhCCeEEecCCCCchHhheecHHHhhCcCCccEEEecCCcc
Confidence 46899999999999999997655 35665 6788999999988 44453
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=98.93 E-value=7e-10 Score=99.65 Aligned_cols=110 Identities=14% Similarity=0.066 Sum_probs=83.8
Q ss_pred hhccccccccc---chhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCc
Q 014834 93 IVRGGRDLFKL---LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL 169 (417)
Q Consensus 93 ~vr~g~~~f~~---~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~ 169 (417)
-+|+|+|.... ....+.| ++|||||+|++|..+|+.|+.. |++|.++++.. .........++.. .
T Consensus 24 ~~~~g~w~~~~~~~~~~~l~~-~~vgiiG~G~IG~~va~~l~~f------g~~v~~~d~~~-~~~~~~~~~~~~~----~ 91 (188)
T d2naca1 24 WARKGGWNIADCVSHAYDLEA-MHVGTVAAGRIGLAVLRRLAPF------DVHLHYTDRHR-LPESVEKELNLTW----H 91 (188)
T ss_dssp HHHTTCCCHHHHHTTCCCCTT-CEEEEECCSHHHHHHHHHHGGG------TCEEEEECSSC-CCHHHHHHHTCEE----C
T ss_pred HHHhCCCCCcccCCcceeccc-cceeeccccccchhhhhhhhcc------CceEEEEeecc-ccccccccccccc----c
Confidence 34678886432 2367899 9999999999999999999988 99988776643 3344445556664 5
Q ss_pred CCHHhhcCcCCEEEEccCCchH-HHHHH-HHHhcCCCCcEEE-EecCc
Q 014834 170 GDIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILG-LSHGF 214 (417)
Q Consensus 170 ~s~~Ea~~~ADIViLavpd~~~-~~Vl~-eI~~~lk~gaiLi-~a~G~ 214 (417)
.+++|++++||+|++++|-... ..++. +.+..||+|++|+ .+-|-
T Consensus 92 ~~l~~~l~~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ 139 (188)
T d2naca1 92 ATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGK 139 (188)
T ss_dssp SSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGG
T ss_pred CCHHHHHHhccchhhcccccccchhhhHHHHHHhCCCCCEEEecCchh
Confidence 7899999999999999996655 45664 6888999999988 44453
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.91 E-value=1.2e-09 Score=98.05 Aligned_cols=107 Identities=19% Similarity=0.186 Sum_probs=82.5
Q ss_pred hhccccccccc-chhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCC
Q 014834 93 IVRGGRDLFKL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (417)
Q Consensus 93 ~vr~g~~~f~~-~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s 171 (417)
.+|.|+|.... ....+.| ++|||||+|.+|..+|+.++.. |.+|+++++... .......++. ..+
T Consensus 26 ~~~~~~W~~~~~~~~~l~~-k~vgiiG~G~IG~~va~~~~~f------g~~v~~~d~~~~--~~~~~~~~~~-----~~~ 91 (184)
T d1ygya1 26 SLREHTWKRSSFSGTEIFG-KTVGVVGLGRIGQLVAQRIAAF------GAYVVAYDPYVS--PARAAQLGIE-----LLS 91 (184)
T ss_dssp HHHTTCCCGGGCCBCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECTTSC--HHHHHHHTCE-----ECC
T ss_pred HHHhCCCCccccccccccc-eeeeeccccchhHHHHHHhhhc------cceEEeecCCCC--hhHHhhcCce-----ecc
Confidence 35778886543 2467899 9999999999999999999877 999877665432 2344455666 468
Q ss_pred HHhhcCcCCEEEEccCCchHH-HHHH-HHHhcCCCCcEEEE-ecC
Q 014834 172 IYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGL-SHG 213 (417)
Q Consensus 172 ~~Ea~~~ADIViLavpd~~~~-~Vl~-eI~~~lk~gaiLi~-a~G 213 (417)
.+|++++||+|++++|-.... .++. +.+..||+|++|+- +=|
T Consensus 92 l~ell~~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~sRG 136 (184)
T d1ygya1 92 LDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARG 136 (184)
T ss_dssp HHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCT
T ss_pred HHHHHhhCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEecch
Confidence 999999999999999976654 4665 68889999999884 445
|
| >d2ahra1 a.100.1.10 (A:153-256) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: ProC C-terminal domain-like domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.81 E-value=3.6e-09 Score=87.17 Aligned_cols=64 Identities=14% Similarity=0.170 Sum_probs=59.9
Q ss_pred ccccchhhhchHHHH----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcH--HHHHhcccCch
Q 014834 302 IFGERGILLGAVHGI----VESLFRRFTENGMSEDLAYKNTVECITGIISKIISTQGM--LAVYNSFSGED 366 (417)
Q Consensus 302 l~ge~t~L~G~~pA~----iea~~d~~v~~Gl~~e~A~~~~~q~~~~g~~~li~e~G~--~~l~~~vss~~ 366 (417)
.|+..|+|+||+||| ++++.+.+++.|+++++|.+++.|++. |.+.|+.+++. ..|+++|+||.
T Consensus 2 ~~d~~TalsGSGPAf~~~~~ea~~~~~~~~Gl~~~~a~~l~~~t~~-gs~~ll~~~~~~p~~l~~~V~Spg 71 (104)
T d2ahra1 2 DFDTFTALAGSSPAYIYLFIEALAKAGVKNGIPKAKALEIVTQTVL-ASASNLKTSSQSPHDFIDAICSPG 71 (104)
T ss_dssp GHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-HHHHHHHHSSSCHHHHHHHHCCTT
T ss_pred CcchHhHhccChHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHhccCCC
Confidence 477889999999995 799999999999999999999999999 99999999887 99999999995
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=98.77 E-value=2.4e-09 Score=97.21 Aligned_cols=104 Identities=16% Similarity=0.186 Sum_probs=78.2
Q ss_pred hccccccccc--chhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCC
Q 014834 94 VRGGRDLFKL--LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (417)
Q Consensus 94 vr~g~~~f~~--~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s 171 (417)
+++|+|.... ....|.| ++|||||+|++|..+|+.|+.. |++|+++++..... ....+. ..+
T Consensus 27 ~~~g~w~~~~~~~~~~l~~-ktvgIiG~G~IG~~va~~l~~f------g~~v~~~d~~~~~~----~~~~~~-----~~~ 90 (199)
T d1dxya1 27 LQAGDYEKAGTFIGKELGQ-QTVGVMGTGHIGQVAIKLFKGF------GAKVIAYDPYPMKG----DHPDFD-----YVS 90 (199)
T ss_dssp HHTTCHHHHTCCCCCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCSS----CCTTCE-----ECC
T ss_pred HHhCCCCcccCcccccccc-eeeeeeeccccccccccccccc------ceeeeccCCccchh----hhcchh-----HHH
Confidence 5677886321 2378999 9999999999999999999987 99998776643221 112333 458
Q ss_pred HHhhcCcCCEEEEccCCchHH-HHHH-HHHhcCCCCcEEE-EecC
Q 014834 172 IYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILG-LSHG 213 (417)
Q Consensus 172 ~~Ea~~~ADIViLavpd~~~~-~Vl~-eI~~~lk~gaiLi-~a~G 213 (417)
.+++++.||+|++++|..... .++. +.+..||+|++|+ .+-|
T Consensus 91 l~~l~~~~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG 135 (199)
T d1dxya1 91 LEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARP 135 (199)
T ss_dssp HHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCT
T ss_pred HHHHHHhcccceeeecccccccccccHHHhhccCCceEEEecccH
Confidence 999999999999999976653 4554 5778899999988 4445
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=98.75 E-value=3.2e-09 Score=90.77 Aligned_cols=98 Identities=16% Similarity=0.130 Sum_probs=71.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCc---eecCCCcCCHHhhcCcCCEEEEccCC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF---TEENGTLGDIYETISGSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~---~~~~~~~~s~~Ea~~~ADIViLavpd 188 (417)
|||+|||+|+||..+|..|.+. |++|.+..|...+... ....+. ........+..+....+|+||+++|.
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~------G~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka 73 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQ------GHEVQGWLRVPQPYCS-VNLVETDGSIFNESLTANDPDFLATSDLLLVTLKA 73 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCSEEE-EEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCG
T ss_pred CEEEEECcCHHHHHHHHHHHHC------CCceEEEEcCHHHhhh-hccccCCccccccccccchhhhhcccceEEEeecc
Confidence 6999999999999999999999 9999888776432110 000110 00000123455677899999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEE-EecCchh
Q 014834 189 AAQADNYEKIFSCMKPNSILG-LSHGFLL 216 (417)
Q Consensus 189 ~~~~~Vl~eI~~~lk~gaiLi-~a~G~~i 216 (417)
....++++.+.+++.++++|+ ..-|+..
T Consensus 74 ~~~~~~~~~l~~~~~~~~~Iv~~qNG~~~ 102 (167)
T d1ks9a2 74 WQVSDAVKSLASTLPVTTPILLIHNGMGT 102 (167)
T ss_dssp GGHHHHHHHHHTTSCTTSCEEEECSSSCT
T ss_pred cchHHHHHhhccccCcccEEeeccCcccH
Confidence 999999999999999888655 6678753
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.71 E-value=8e-09 Score=92.57 Aligned_cols=104 Identities=21% Similarity=0.220 Sum_probs=77.0
Q ss_pred hccccccccc-chhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCH
Q 014834 94 VRGGRDLFKL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172 (417)
Q Consensus 94 vr~g~~~f~~-~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~ 172 (417)
+++|.|.... ....+.| ++|||||+|.+|..+|+.+... |++|+++++..... ...... ..++
T Consensus 27 ~~~~~w~~~~~~~~~l~~-~~vgiiG~G~IG~~va~~l~~f------g~~v~~~d~~~~~~-----~~~~~~----~~~l 90 (188)
T d1sc6a1 27 AHRGVGNKLAAGSFEARG-KKLGIIGYGHIGTQLGILAESL------GMYVYFYDIENKLP-----LGNATQ----VQHL 90 (188)
T ss_dssp HHHTCCC-----CCCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCCC-----CTTCEE----CSCH
T ss_pred HHhCCCcccccccccccc-eEEEEeecccchhhhhhhcccc------cceEeeccccccch-----hhhhhh----hhhH
Confidence 4567776433 2467899 9999999999999999999887 99998877653321 122222 4689
Q ss_pred HhhcCcCCEEEEccCCchH-HHHHH-HHHhcCCCCcEEE-EecC
Q 014834 173 YETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILG-LSHG 213 (417)
Q Consensus 173 ~Ea~~~ADIViLavpd~~~-~~Vl~-eI~~~lk~gaiLi-~a~G 213 (417)
+|++++||+|++++|-... ..++. +.+..|+++++|+ .+-|
T Consensus 91 ~ell~~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG 134 (188)
T d1sc6a1 91 SDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRG 134 (188)
T ss_dssp HHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCS
T ss_pred HHHHhhccceeecccCCcchhhhccHHHHhhCCCCCEEEEcCcH
Confidence 9999999999999996554 35664 6788899999988 5556
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=6.6e-08 Score=85.49 Aligned_cols=95 Identities=19% Similarity=0.173 Sum_probs=76.8
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
..|.| |+++|||||.+|..+|+.++.. |.+|++++..+-+ .-+|..+|+. +.+.+|+++.+|+|+.+
T Consensus 20 ~~l~G-k~v~V~GyG~iG~g~A~~~rg~------G~~V~v~e~dp~~-al~A~~dG~~-----v~~~~~a~~~adivvta 86 (163)
T d1li4a1 20 VMIAG-KVAVVAGYGDVGKGCAQALRGF------GARVIITEIDPIN-ALQAAMEGYE-----VTTMDEACQEGNIFVTT 86 (163)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHHH-HHHHHHTTCE-----ECCHHHHTTTCSEEEEC
T ss_pred ceecC-CEEEEeccccccHHHHHHHHhC------CCeeEeeecccch-hHHhhcCceE-----eeehhhhhhhccEEEec
Confidence 45788 9999999999999999999998 9999888765333 4456678998 46899999999999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEecCch
Q 014834 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 186 vpd~~~~~Vl~eI~~~lk~gaiLi~a~G~~ 215 (417)
|..... +=.+-++.||+|++|.-++.|.
T Consensus 87 TGn~~v--I~~eh~~~MKdgaIL~N~Ghfd 114 (163)
T d1li4a1 87 TGCIDI--ILGRHFEQMKDDAIVCNIGHFD 114 (163)
T ss_dssp SSCSCS--BCHHHHTTCCTTEEEEECSSST
T ss_pred CCCccc--hhHHHHHhccCCeEEEEecccc
Confidence 986432 1125667899999999877774
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=98.49 E-value=1.8e-07 Score=82.62 Aligned_cols=94 Identities=17% Similarity=0.204 Sum_probs=77.7
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
.-|.| |++.|+|||-.|..+|+.+|.. |.+|+|....+ -..-+|.-+||. +.+.+|+++.+|++|.+
T Consensus 19 ~~laG-k~vvV~GYG~vGrG~A~~~rg~------Ga~V~V~E~DP-i~alqA~mdGf~-----v~~~~~a~~~aDi~vTa 85 (163)
T d1v8ba1 19 FLISG-KIVVICGYGDVGKGCASSMKGL------GARVYITEIDP-ICAIQAVMEGFN-----VVTLDEIVDKGDFFITC 85 (163)
T ss_dssp CCCTT-SEEEEECCSHHHHHHHHHHHHH------TCEEEEECSCH-HHHHHHHTTTCE-----ECCHHHHTTTCSEEEEC
T ss_pred ceecC-CEEEEecccccchhHHHHHHhC------CCEEEEEecCc-hhhHHHHhcCCc-----cCchhHccccCcEEEEc
Confidence 44778 9999999999999999999998 99998886653 334556678998 57999999999999999
Q ss_pred cCCchHHHHH-HHHHhcCCCCcEEEEecCch
Q 014834 186 ISDAAQADNY-EKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 186 vpd~~~~~Vl-~eI~~~lk~gaiLi~a~G~~ 215 (417)
|.... ++ .+.+..||+|++|.-++-|.
T Consensus 86 TGn~~---vI~~~h~~~MKdgaIl~N~GHfd 113 (163)
T d1v8ba1 86 TGNVD---VIKLEHLLKMKNNAVVGNIGHFD 113 (163)
T ss_dssp CSSSS---SBCHHHHTTCCTTCEEEECSSTT
T ss_pred CCCCc---cccHHHHHHhhCCeEEEeccccc
Confidence 99755 33 25677899999999887775
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=98.48 E-value=3.2e-07 Score=85.74 Aligned_cols=102 Identities=13% Similarity=0.082 Sum_probs=77.0
Q ss_pred cCCHHhhcCcCCEEEEccCCch-HHHHHHHHHhcCCCCcEEEEecCchhh---hhhhcccCCCCCccEEEeccCCCchhH
Q 014834 169 LGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFLLG---HLQSIGLDFPKNIGVIAVCPKGMGPSV 244 (417)
Q Consensus 169 ~~s~~Ea~~~ADIViLavpd~~-~~~Vl~eI~~~lk~gaiLi~a~G~~i~---~~~~~~i~~~~dv~VI~v~Pntpg~~v 244 (417)
+.|+.|++++||+||+++|+.. ..+++++|.+++++|++|++++.+... .+.+ ..-+++++++..||..+...
T Consensus 132 ~~d~~Eav~~ADiII~~vP~~~~v~~Vi~~I~~~l~~g~Iiid~STi~~~~~~~l~e--~l~~kgi~vi~~hp~a~pe~- 208 (242)
T d2b0ja2 132 TSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFK--DLGREDLNITSYHPGCVPEM- 208 (242)
T ss_dssp ESCHHHHHTTCSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSSSCHHHHHHHHH--HTTCTTSEEEECBCSSCTTT-
T ss_pred ECCHHHHHhcCCeEEEeeecHHHHHHHHHHHHhhCCCCcEEEecCCCcHHHHHHHHH--hcccCCCEEECCCccCcCcc-
Confidence 5789999999999999999755 468999999999999999988876532 2222 12346889999999553222
Q ss_pred HHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 245 RRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 245 r~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~ 287 (417)
.|...++ ....+.+..+.++.+++.+|..
T Consensus 209 ------------~g~~li~--~~~aseE~iekv~elles~Gk~ 237 (242)
T d2b0ja2 209 ------------KGQVYIA--EGYASEEAVNKLYEIGKIARGK 237 (242)
T ss_dssp ------------CCCEEEE--ESSSCHHHHHHHHHHHHHHHSC
T ss_pred ------------ccceEEe--cCCCCHHHHHHHHHHHHHHCCC
Confidence 2444422 3457889999999999999974
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=98.37 E-value=6.5e-07 Score=78.03 Aligned_cols=96 Identities=19% Similarity=0.242 Sum_probs=71.9
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
.+++ ++|.|||.|.||..++++|... |. ++.+++|..++..+.+.+.|... ..+.+..+.+.++|+||.+
T Consensus 21 ~l~~-~~ilviGaG~~g~~v~~~L~~~------g~~~i~v~nRt~~ka~~l~~~~~~~~--~~~~~~~~~l~~~Divi~a 91 (159)
T d1gpja2 21 SLHD-KTVLVVGAGEMGKTVAKSLVDR------GVRAVLVANRTYERAVELARDLGGEA--VRFDELVDHLARSDVVVSA 91 (159)
T ss_dssp CCTT-CEEEEESCCHHHHHHHHHHHHH------CCSEEEEECSSHHHHHHHHHHHTCEE--CCGGGHHHHHHTCSEEEEC
T ss_pred Cccc-CeEEEECCCHHHHHHHHHHHhc------CCcEEEEEcCcHHHHHHHHHhhhccc--ccchhHHHHhccCCEEEEe
Confidence 4567 9999999999999999999999 87 78899998778888888888653 1245677888999999999
Q ss_pred cCCch---HHHHHHHHHhcCCCC--cEEEEe
Q 014834 186 ISDAA---QADNYEKIFSCMKPN--SILGLS 211 (417)
Q Consensus 186 vpd~~---~~~Vl~eI~~~lk~g--aiLi~a 211 (417)
|+... ..+.++.....-+.+ .++++.
T Consensus 92 tss~~~ii~~~~i~~~~~~r~~~~~~~iiDl 122 (159)
T d1gpja2 92 TAAPHPVIHVDDVREALRKRDRRSPILIIDI 122 (159)
T ss_dssp CSSSSCCBCHHHHHHHHHHCSSCCCEEEEEC
T ss_pred cCCCCccccHhhhHHHHHhcccCCCeEEEee
Confidence 98442 256666543322222 356654
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.32 E-value=2e-06 Score=76.90 Aligned_cols=154 Identities=14% Similarity=0.171 Sum_probs=91.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHH-------------------HcCceecCCCcCCH
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-------------------AAGFTEENGTLGDI 172 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~-------------------~~G~~~~~~~~~s~ 172 (417)
|||+|||+|-+|.++|..|.+. |++|+ +.+.+++..+.-. ..+... ...+.
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~------g~~V~-g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~---~~~~~ 70 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSAR------GHEVI-GVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLS---GTTDF 70 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT------TCEEE-EECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEE---EESCH
T ss_pred CEEEEECCCHhHHHHHHHHHhC------CCcEE-EEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccc---cCCCH
Confidence 6899999999999999999999 99986 5555444333221 111111 14678
Q ss_pred HhhcCcCCEEEEccCCc----------hHHHHHHH---HHhcCCCCcEEEEecCchhhh--------hhh-cccCCCCCc
Q 014834 173 YETISGSDLVLLLISDA----------AQADNYEK---IFSCMKPNSILGLSHGFLLGH--------LQS-IGLDFPKNI 230 (417)
Q Consensus 173 ~Ea~~~ADIViLavpd~----------~~~~Vl~e---I~~~lk~gaiLi~a~G~~i~~--------~~~-~~i~~~~dv 230 (417)
.+++++||++++|+|.. ....+.+. +....+++++|++-+-+.... ++. ......+++
T Consensus 71 ~~~i~~~d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~~~~ 150 (202)
T d1mv8a2 71 KKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDF 150 (202)
T ss_dssp HHHHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTB
T ss_pred HHHHhhCCEEEEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhccccccccccc
Confidence 89999999999999842 12344444 445566788777655432211 111 111223333
Q ss_pred cEEEeccC--CCchhHHHHHhhcccccCCCceEEEeecCCCCHHHHHHHHHHHHHhCCC
Q 014834 231 GVIAVCPK--GMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (417)
Q Consensus 231 ~VI~v~Pn--tpg~~vr~ly~~G~~~~G~Gv~~liav~~dvsgea~e~a~~L~~alG~~ 287 (417)
. +..+|- .+|..+++....- ..++.. .+.+..+.+++++..+..+
T Consensus 151 ~-~~~~PE~~~~G~a~~d~~~~~--------~iViG~---~~~~~~~~~~~ly~~i~~~ 197 (202)
T d1mv8a2 151 G-VGTNPEFLRESTAIKDYDFPP--------MTVIGE---LDKQTGDLLEEIYRELDAP 197 (202)
T ss_dssp E-EEECCCCCCTTSHHHHHHSCS--------CEEEEE---SSHHHHHHHHHHHTTSSSC
T ss_pred c-chhhhhhhcccchhhhhcCCC--------eEEEEe---CCHHHHHHHHHHHHhcCCC
Confidence 3 455664 4455544443321 012221 2467888899999888753
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.16 E-value=8.9e-06 Score=67.52 Aligned_cols=95 Identities=13% Similarity=0.038 Sum_probs=63.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCH---Hhh-cCcCCEEEEccC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI---YET-ISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~---~Ea-~~~ADIViLavp 187 (417)
|||.|+|+|.+|..+++.|.+. |++|++.+.+.+...+.+.+.|.....|...+. +++ ++++|.++.+++
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~------g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~ 74 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEK------GHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTG 74 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCS
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCC
Confidence 6899999999999999999999 999887766544333333444654322222332 233 789999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEec
Q 014834 188 DAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
+....-+...+...+.+..+|..++
T Consensus 75 ~d~~N~~~~~~~k~~~~~~iI~~~~ 99 (132)
T d1lssa_ 75 KEEVNLMSSLLAKSYGINKTIARIS 99 (132)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEEECS
T ss_pred cHHHHHHHHHHHHHcCCceEEEEec
Confidence 8765444444555566666666444
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=98.13 E-value=5.3e-06 Score=71.25 Aligned_cols=80 Identities=16% Similarity=0.187 Sum_probs=60.4
Q ss_pred CEEEEEcccchHHH-HHHHHHhhhhhhcCCcEEE-EEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCc
Q 014834 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG~G~mG~A-iA~~Lr~s~~~~~~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~ 189 (417)
.||||||+|+||.- +...|+.. .+++++ |++++.++..+.+.+.++.. ..+.++++++.|+|++++|+.
T Consensus 2 iri~iIG~G~~g~~~~~~~l~~~-----~~~~i~~v~d~~~~~~~~~~~~~~~~~----~~~~~~l~~~~D~V~I~tp~~ 72 (164)
T d1tlta1 2 LRIGVVGLGGIAQKAWLPVLAAA-----SDWTLQGAWSPTRAKALPICESWRIPY----ADSLSSLAASCDAVFVHSSTA 72 (164)
T ss_dssp EEEEEECCSTHHHHTHHHHHHSC-----SSEEEEEEECSSCTTHHHHHHHHTCCB----CSSHHHHHTTCSEEEECSCTT
T ss_pred CEEEEEcCCHHHHHHHHHHHHhC-----CCcEEEEEEechhHhhhhhhhcccccc----cccchhhhhhcccccccccch
Confidence 48999999999975 56666654 155654 44555556666777778764 567889999999999999999
Q ss_pred hHHHHHHHHHh
Q 014834 190 AQADNYEKIFS 200 (417)
Q Consensus 190 ~~~~Vl~eI~~ 200 (417)
.+.++......
T Consensus 73 ~h~~~~~~al~ 83 (164)
T d1tlta1 73 SHFDVVSTLLN 83 (164)
T ss_dssp HHHHHHHHHHH
T ss_pred hcccccccccc
Confidence 99888876544
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.01 E-value=8.1e-06 Score=71.25 Aligned_cols=84 Identities=15% Similarity=0.178 Sum_probs=59.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEE-EEecCChhhHHHHHHcCceecCCCcCCHHhhc--CcCCEEEEccCC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETI--SGSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~--~~ADIViLavpd 188 (417)
.||||||+|.+|..++..|+.. .+++|+ ++++..++..+.+.+.++........+.++++ .+.|+|++++|+
T Consensus 2 iki~iIG~G~~g~~~~~~l~~~-----~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~ 76 (184)
T d1ydwa1 2 IRIGVMGCADIARKVSRAIHLA-----PNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPT 76 (184)
T ss_dssp EEEEEESCCTTHHHHHHHHHHC-----TTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCG
T ss_pred eEEEEEcCCHHHHHHHHHHHhC-----CCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccc
Confidence 3899999999999999999765 145655 34444445556667777542111246888887 467999999999
Q ss_pred chHHHHHHHHHh
Q 014834 189 AAQADNYEKIFS 200 (417)
Q Consensus 189 ~~~~~Vl~eI~~ 200 (417)
..+.++......
T Consensus 77 ~~h~~~~~~~l~ 88 (184)
T d1ydwa1 77 SLHVEWAIKAAE 88 (184)
T ss_dssp GGHHHHHHHHHT
T ss_pred hhhcchhhhhhh
Confidence 999887766543
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=98.01 E-value=9.8e-06 Score=69.71 Aligned_cols=81 Identities=17% Similarity=0.143 Sum_probs=59.3
Q ss_pred CEEEEEcccchHHH-HHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcC-cCCEEEEccCCc
Q 014834 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG~G~mG~A-iA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~-~ADIViLavpd~ 189 (417)
.||||||+|.+|.. +...|+.. .++++++.+++.++..+.+.+.++.. ...+.+++++ +.|+|++++|+.
T Consensus 2 irvgiiG~G~~~~~~~~~~l~~~-----~~~~~~~~d~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~iD~V~I~tp~~ 73 (167)
T d1xeaa1 2 LKIAMIGLGDIAQKAYLPVLAQW-----PDIELVLCTRNPKVLGTLATRYRVSA---TCTDYRDVLQYGVDAVMIHAATD 73 (167)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTS-----TTEEEEEECSCHHHHHHHHHHTTCCC---CCSSTTGGGGGCCSEEEECSCGG
T ss_pred eEEEEEcCCHHHHHHHHHHHHhC-----CCcEEEEEECCHHHHHHHHHhccccc---ccccHHHhcccccceeccccccc
Confidence 58999999999976 56666654 14566666665556667777777653 1456777765 679999999999
Q ss_pred hHHHHHHHHHh
Q 014834 190 AQADNYEKIFS 200 (417)
Q Consensus 190 ~~~~Vl~eI~~ 200 (417)
.+.++......
T Consensus 74 ~H~~~~~~al~ 84 (167)
T d1xeaa1 74 VHSTLAAFFLH 84 (167)
T ss_dssp GHHHHHHHHHH
T ss_pred ccccccccccc
Confidence 99998876554
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=97.98 E-value=1.3e-05 Score=66.15 Aligned_cols=94 Identities=17% Similarity=0.146 Sum_probs=63.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec--CCCcCC-HHhh-cCcCCEEEEccC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGTLGD-IYET-ISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~--~~~~~s-~~Ea-~~~ADIViLavp 187 (417)
|++.|||+|.+|..+|+.|.+. |++|++.+.+ ....+.+.+.|.... |.+-.+ ++++ +++||.|+++++
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~------g~~vvvid~d-~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~ 73 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRM------GHEVLAVDIN-EEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIG 73 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCCCEEEESC-HHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCC
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCeEEEecCc-HHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcC
Confidence 6899999999999999999999 9998776654 455666666675332 211111 3333 789999999999
Q ss_pred CchHHHHH-HHHHhcCCCCcEEEEec
Q 014834 188 DAAQADNY-EKIFSCMKPNSILGLSH 212 (417)
Q Consensus 188 d~~~~~Vl-~eI~~~lk~gaiLi~a~ 212 (417)
+.....++ ..+........++.-+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~iiar~~ 99 (134)
T d2hmva1 74 ANIQASTLTTLLLKELDIPNIWVKAQ 99 (134)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred chHHhHHHHHHHHHHcCCCcEEeecc
Confidence 87665444 33444444444555444
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.90 E-value=1.9e-05 Score=66.59 Aligned_cols=81 Identities=19% Similarity=0.144 Sum_probs=60.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec--CCC--cCCHHhhcCcCCEEEEccC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGT--LGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~--~~~--~~s~~Ea~~~ADIViLavp 187 (417)
|+|.|||+|.||..+|+.|.+. |++|+|.+|+.++..+.+...+.... .+. ....++.+...|+++.++|
T Consensus 3 K~IliiGaG~~G~~~a~~L~~~------g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~ 76 (182)
T d1e5qa1 3 KSVLMLGSGFVTRPTLDVLTDS------GIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIP 76 (182)
T ss_dssp CEEEEECCSTTHHHHHHHHHTT------TCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSC
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeecc
Confidence 8999999999999999999999 99999999987766666655442210 000 1234567889999999999
Q ss_pred CchHHHHHHHH
Q 014834 188 DAAQADNYEKI 198 (417)
Q Consensus 188 d~~~~~Vl~eI 198 (417)
......+....
T Consensus 77 ~~~~~~~~~~~ 87 (182)
T d1e5qa1 77 YTFHATVIKSA 87 (182)
T ss_dssp GGGHHHHHHHH
T ss_pred chhhhHHHHHH
Confidence 87666555443
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=97.89 E-value=1.6e-05 Score=69.39 Aligned_cols=81 Identities=19% Similarity=0.192 Sum_probs=56.9
Q ss_pred EEEEEcccchHHH-HHHHHHhhhhhhcCCcEEE-EEecCChhhHHHHHHcCceecCCCcCCHHhhcC--cCCEEEEccCC
Q 014834 113 QIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (417)
Q Consensus 113 kIgIIG~G~mG~A-iA~~Lr~s~~~~~~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~--~ADIViLavpd 188 (417)
||||||+|.+|.. ++..+++. +..++++ |+++..++..+.+.+.|... ...+.+|+++ +.|+|++++|+
T Consensus 5 rigiIG~G~~g~~~h~~~l~~~----~~~~~i~~v~d~~~~~~~~~~~~~~~~~---~~~~~~ell~~~~id~v~I~tp~ 77 (181)
T d1zh8a1 5 RLGIVGCGIAARELHLPALKNL----SHLFEITAVTSRTRSHAEEFAKMVGNPA---VFDSYEELLESGLVDAVDLTLPV 77 (181)
T ss_dssp EEEEECCSHHHHHTHHHHHHTT----TTTEEEEEEECSSHHHHHHHHHHHSSCE---EESCHHHHHHSSCCSEEEECCCG
T ss_pred EEEEEcCCHHHHHHHHHHHHhC----CCCeEEEEEEeccHhhhhhhhccccccc---eeeeeeccccccccceeeccccc
Confidence 7899999999986 57777763 0024554 44454444445566667542 1578899875 57999999999
Q ss_pred chHHHHHHHHHh
Q 014834 189 AAQADNYEKIFS 200 (417)
Q Consensus 189 ~~~~~Vl~eI~~ 200 (417)
..+.+++.....
T Consensus 78 ~~h~~~~~~al~ 89 (181)
T d1zh8a1 78 ELNLPFIEKALR 89 (181)
T ss_dssp GGHHHHHHHHHH
T ss_pred cccccccccccc
Confidence 999988876554
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.68 E-value=7.8e-05 Score=63.71 Aligned_cols=72 Identities=21% Similarity=0.248 Sum_probs=46.6
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhHHHHHHc----CceecCC-CcCCHHhhcCcCCE
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA----GFTEENG-TLGDIYETISGSDL 181 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~~~A~~~----G~~~~~~-~~~s~~Ea~~~ADI 181 (417)
.+ +||+|||+|.+|.++|..|... ++ ++.+.+...++....+.+. -+...+. ......+.+++||+
T Consensus 5 ~~-~KI~IiGaG~vG~~~a~~l~~~------~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDv 77 (148)
T d1ldna1 5 GG-ARVVVIGAGFVGASYVFALMNQ------GIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADL 77 (148)
T ss_dssp TS-CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSE
T ss_pred CC-CeEEEECcCHHHHHHHHHHHhc------CCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhcccee
Confidence 34 8999999999999999999988 76 6766665544433333321 1111000 01233467899999
Q ss_pred EEEccC
Q 014834 182 VLLLIS 187 (417)
Q Consensus 182 ViLavp 187 (417)
|+++..
T Consensus 78 vvitag 83 (148)
T d1ldna1 78 VVICAG 83 (148)
T ss_dssp EEECCS
T ss_pred EEEecc
Confidence 999743
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=97.56 E-value=4.8e-05 Score=65.83 Aligned_cols=82 Identities=11% Similarity=0.220 Sum_probs=56.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEE-EEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~ 190 (417)
.||||||+|+||..++..|++. .+++++ |.+++... ....++.. ..+.++...+.|+|++++|+..
T Consensus 4 irvgiiG~G~ig~~~~~~l~~~-----~~~elvav~~~~~~~----~~~~~~~~----~~~~~~~~~~~D~Vvi~tp~~~ 70 (170)
T d1f06a1 4 IRVAIVGYGNLGRSVEKLIAKQ-----PDMDLVGIFSRRATL----DTKTPVFD----VADVDKHADDVDVLFLCMGSAT 70 (170)
T ss_dssp EEEEEECCSHHHHHHHHHHTTC-----SSEEEEEEEESSSCC----SSSSCEEE----GGGGGGTTTTCSEEEECSCTTT
T ss_pred ceEEEECChHHHHHHHHHHHhC-----CCcEEEEEEeccccc----cccccccc----chhhhhhccccceEEEeCCCcc
Confidence 3789999999999999999875 156654 33443221 22234443 4567778889999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEE
Q 014834 191 QADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 191 ~~~Vl~eI~~~lk~gaiLi 209 (417)
+.++.... |+.|.-++
T Consensus 71 h~~~a~~a---L~aG~~vv 86 (170)
T d1f06a1 71 DIPEQAPK---FAQFACTV 86 (170)
T ss_dssp HHHHHHHH---HTTTSEEE
T ss_pred cHHHHHHH---HHCCCcEE
Confidence 87766543 45676544
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.47 E-value=7.5e-05 Score=62.44 Aligned_cols=78 Identities=19% Similarity=0.152 Sum_probs=53.4
Q ss_pred CEEEEE-cccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcC---ceecCCCcCCHHhhcCcCCEEEEccC
Q 014834 112 NQIGVI-GWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG---FTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgII-G~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G---~~~~~~~~~s~~Ea~~~ADIViLavp 187 (417)
|||+|| |.|.||.++|+.|.+. |++|+++.|+.++..+.+.+.+ ... .....+........+......+
T Consensus 1 Mki~vigGaG~iG~alA~~la~~------G~~V~l~~R~~e~~~~l~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 73 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATL------GHEIVVGSRREEKAEAKAAEYRRIAGDA-SITGMKNEDAAEACDIAVLTIP 73 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTT------TCEEEEEESSHHHHHHHHHHHHHHHSSC-CEEEEEHHHHHHHCSEEEECSC
T ss_pred CEEEEEeCCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHhcCCCc-eEEeeccccccchhhhhhhhee
Confidence 689999 8999999999999999 9999999887554433333321 110 0012345556666778888887
Q ss_pred CchHHHHHH
Q 014834 188 DAAQADNYE 196 (417)
Q Consensus 188 d~~~~~Vl~ 196 (417)
.....+...
T Consensus 74 ~~~~~~~~~ 82 (212)
T d1jaya_ 74 WEHAIDTAR 82 (212)
T ss_dssp HHHHHHHHH
T ss_pred eeccchHHH
Confidence 777666554
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=97.45 E-value=0.00012 Score=65.98 Aligned_cols=84 Identities=10% Similarity=0.126 Sum_probs=57.3
Q ss_pred CEEEEEcccchHHH-HHHHHHhhhhhhcCCcEEE-EEecCChhhHHHHHHcCceecC-CCcCCHHhhcC--cCCEEEEcc
Q 014834 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEEN-GTLGDIYETIS--GSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~A-iA~~Lr~s~~~~~~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~~-~~~~s~~Ea~~--~ADIViLav 186 (417)
-+|||||+|.||.. +...++.. .+++|+ |.+++.++..+.+++.|+.... ....|.+|+++ +.|+|++++
T Consensus 34 iriaiIG~G~~~~~~~~~~~~~~-----~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~t 108 (221)
T d1h6da1 34 FGYAIVGLGKYALNQILPGFAGC-----QHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIIL 108 (221)
T ss_dssp EEEEEECCSHHHHHTHHHHTTTC-----SSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECS
T ss_pred EEEEEEcCcHHHHHHHHHHHHhC-----CCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeecc
Confidence 38999999999975 45555543 155665 4455545556677777764210 01467888875 579999999
Q ss_pred CCchHHHHHHHHHh
Q 014834 187 SDAAQADNYEKIFS 200 (417)
Q Consensus 187 pd~~~~~Vl~eI~~ 200 (417)
|+..+.++..+...
T Consensus 109 p~~~H~~~~~~al~ 122 (221)
T d1h6da1 109 PNSLHAEFAIRAFK 122 (221)
T ss_dssp CGGGHHHHHHHHHH
T ss_pred chhhhhhHHHHhhh
Confidence 99999888766543
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=97.44 E-value=0.00034 Score=59.97 Aligned_cols=69 Identities=13% Similarity=0.043 Sum_probs=46.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHH-------cCceecCCCcCCHHhhcCcCCEEE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~-------~G~~~~~~~~~s~~Ea~~~ADIVi 183 (417)
+||+|||.|+.|.++|..|... ++ ++++.+.+.......+.+ .+.........+.++++++||+|+
T Consensus 8 ~KI~IIGaG~VG~~lA~~l~~~------~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVv 81 (154)
T d1pzga1 8 KKVAMIGSGMIGGTMGYLCALR------ELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVI 81 (154)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEE
T ss_pred CcEEEECCCHHHHHHHHHHHhC------CCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEE
Confidence 7999999999999999988887 76 766666554433333322 121110001245678899999999
Q ss_pred Ecc
Q 014834 184 LLI 186 (417)
Q Consensus 184 Lav 186 (417)
++.
T Consensus 82 ita 84 (154)
T d1pzga1 82 VTA 84 (154)
T ss_dssp ECC
T ss_pred Eec
Confidence 976
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=97.43 E-value=6.5e-05 Score=65.00 Aligned_cols=76 Identities=21% Similarity=0.081 Sum_probs=55.9
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcC---ceecCCCcCCHHh-hcCcCCE
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG---FTEENGTLGDIYE-TISGSDL 181 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G---~~~~~~~~~s~~E-a~~~ADI 181 (417)
..++| |+|.|||.|-.++|++..|.+. |.+|.|.+|+.++..+.+.... ... ..+..+ ...++|+
T Consensus 14 ~~~~~-k~vlIlGaGGaarai~~al~~~------g~~i~I~nRt~~ka~~l~~~~~~~~~~~----~~~~~~~~~~~~dl 82 (170)
T d1nyta1 14 FIRPG-LRILLIGAGGASRGVLLPLLSL------DCAVTITNRTVSRAEELAKLFAHTGSIQ----ALSMDELEGHEFDL 82 (170)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSHHHHHHHHHHTGGGSSEE----ECCSGGGTTCCCSE
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHhccc------ceEEEeccchHHHHHHHHHHHhhccccc----ccccccccccccce
Confidence 35678 9999999999999999999998 8899999998666555555432 111 122222 3467999
Q ss_pred EEEccCCchHH
Q 014834 182 VLLLISDAAQA 192 (417)
Q Consensus 182 ViLavpd~~~~ 192 (417)
||.+||.....
T Consensus 83 iIN~Tp~G~~~ 93 (170)
T d1nyta1 83 IINATSSGISG 93 (170)
T ss_dssp EEECCSCGGGT
T ss_pred eecccccCccc
Confidence 99999987643
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=97.40 E-value=7.2e-05 Score=72.52 Aligned_cols=96 Identities=20% Similarity=0.200 Sum_probs=68.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHH----cCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~----~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
++++|||+|.|+..+++.+..-+ ++ +|.|++|..++..+.+.+ .|+.. ..+.+.++++++||+|+.+|
T Consensus 129 ~~l~iiG~G~QA~~~~~a~~~v~-----~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v--~~~~s~~eav~~ADIi~t~T 201 (340)
T d1x7da_ 129 RKMALIGNGAQSEFQALAFHKHL-----GIEEIVAYDTDPLATAKLIANLKEYSGLTI--RRASSVAEAVKGVDIITTVT 201 (340)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHS-----CCCEEEEECSSHHHHHHHHHHHTTCTTCEE--EECSSHHHHHTTCSEEEECC
T ss_pred ceEEEEcccHHHHHHHHHHhhhc-----ceeeeEEEecChHHHHHHHHhhhhccCCCc--eecCCHHHHHhcCCceeecc
Confidence 79999999999999999987652 45 788888875554444443 24432 12578999999999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCchh
Q 014834 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLL 216 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiLi~a~G~~i 216 (417)
+......+++ ...++||..|.-.++...
T Consensus 202 as~s~~Pv~~--~~~l~pG~hI~aiGs~~p 229 (340)
T d1x7da_ 202 ADKAYATIIT--PDMLEPGMHLNAVGGDCP 229 (340)
T ss_dssp CCSSEEEEEC--GGGCCTTCEEEECSCCBT
T ss_pred ccCCCCcccc--hhhcCCCCEEeecccchh
Confidence 7644333332 245899998876666543
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=97.39 E-value=0.00017 Score=62.27 Aligned_cols=92 Identities=21% Similarity=0.194 Sum_probs=59.6
Q ss_pred CEEEEEcccchHHH-HHHHHHhhhhhhcCCc-EEE-EEecC-ChhhHHHHHHcCceecCCCcCCHHhh-----cCcCCEE
Q 014834 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDI-VVK-VGLRK-GSRSFAEARAAGFTEENGTLGDIYET-----ISGSDLV 182 (417)
Q Consensus 112 kkIgIIG~G~mG~A-iA~~Lr~s~~~~~~G~-~Vi-Vg~r~-~s~s~~~A~~~G~~~~~~~~~s~~Ea-----~~~ADIV 182 (417)
.||||||+|.+|.- +.+.|++. .. +++ +..|+ .++..+.+++.|+... ..+.++. ..+.|+|
T Consensus 5 irvaIIGaG~ig~~~~~~~l~~~------~~~el~avas~~~~~~~~~~a~~~~i~~~---~~~~d~l~~~~~~~~iDiV 75 (157)
T d1nvmb1 5 LKVAIIGSGNIGTDLMIKVLRNA------KYLEMGAMVGIDAASDGLARAQRMGVTTT---YAGVEGLIKLPEFADIDFV 75 (157)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHC------SSEEEEEEECSCTTCHHHHHHHHTTCCEE---SSHHHHHHHSGGGGGEEEE
T ss_pred cEEEEEcCcHHHHHHHHHHHhhC------CcceEEEEEecchhccchhhhhhcCCccc---ccceeeeeecccccccCEE
Confidence 47999999999985 56777665 33 443 33443 2345677888898752 2223333 2468999
Q ss_pred EEccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 014834 183 LLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 183 iLavpd~~~~~Vl~eI~~~lk~gaiLi~a~G 213 (417)
+++||...+.+-... ...++.|..+++.+.
T Consensus 76 f~ATpag~h~~~~~~-~~aa~~G~~VID~s~ 105 (157)
T d1nvmb1 76 FDATSASAHVQNEAL-LRQAKPGIRLIDLTP 105 (157)
T ss_dssp EECSCHHHHHHHHHH-HHHHCTTCEEEECST
T ss_pred EEcCCchhHHHhHHH-HHHHHcCCEEEEccc
Confidence 999998877653322 223578988887665
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.34 E-value=6e-05 Score=59.05 Aligned_cols=68 Identities=15% Similarity=0.209 Sum_probs=45.9
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCh-hhHHHHHHcCceecCCCcC-CHHhhcCcCCEEEE
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLG-DIYETISGSDLVLL 184 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s-~s~~~A~~~G~~~~~~~~~-s~~Ea~~~ADIViL 184 (417)
.|+| |||.|||+|..|.+.|+.|.+. |.+|++++++.. ...+...+ +.... .. ..++.+.+.|+|++
T Consensus 2 ~~~~-K~v~ViGlG~sG~s~a~~L~~~------g~~v~~~D~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~d~vi~ 70 (93)
T d2jfga1 2 DYQG-KNVVIIGLGLTGLSCVDFFLAR------GVTPRVMDTRMTPPGLDKLPE-AVERH---TGSLNDEWLMAADLIVA 70 (93)
T ss_dssp CCTT-CCEEEECCSHHHHHHHHHHHHT------TCCCEEEESSSSCTTGGGSCT-TSCEE---ESBCCHHHHHHCSEEEE
T ss_pred CcCC-CEEEEEeECHHHHHHHHHHHHC------CCEEEEeeCCcCchhHHHHhh-cccee---ecccchhhhccCCEEEE
Confidence 4789 9999999999999999999999 999998887533 22222222 22210 11 12445667788777
Q ss_pred c
Q 014834 185 L 185 (417)
Q Consensus 185 a 185 (417)
.
T Consensus 71 S 71 (93)
T d2jfga1 71 S 71 (93)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=97.33 E-value=0.00046 Score=58.74 Aligned_cols=67 Identities=16% Similarity=0.181 Sum_probs=44.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhHHHHHH-------cCceecCCCcCCHHhhcCcCCEE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLV 182 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~~~A~~-------~G~~~~~~~~~s~~Ea~~~ADIV 182 (417)
+||+|||.|.+|.++|..|... |+ ++++.++...+....+.+ .+... ....+. +.+++||+|
T Consensus 6 ~KI~IIGaG~VG~~~A~~l~~~------~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~--~~~~d~-~~~~~adiv 76 (146)
T d1ez4a1 6 QKVVLVGDGAVGSSYAFAMAQQ------GIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKK--IYSGEY-SDCKDADLV 76 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCE--EEECCG-GGGTTCSEE
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCcEEEEeecccchhHHHHHHHhccccccCCce--EeeccH-HHhccccEE
Confidence 7999999999999999999998 75 676666554433333322 11110 012344 456899999
Q ss_pred EEccC
Q 014834 183 LLLIS 187 (417)
Q Consensus 183 iLavp 187 (417)
+++..
T Consensus 77 vitag 81 (146)
T d1ez4a1 77 VITAG 81 (146)
T ss_dssp EECCC
T ss_pred EEecc
Confidence 99853
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=97.32 E-value=0.00036 Score=59.14 Aligned_cols=68 Identities=15% Similarity=0.196 Sum_probs=42.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhHHHHHH--cCceecCC--CcCCHHhhcCcCCEEEEc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AGFTEENG--TLGDIYETISGSDLVLLL 185 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~~~A~~--~G~~~~~~--~~~s~~Ea~~~ADIViLa 185 (417)
+||+|||.|++|.++|..|... ++ ++.+.+...++....+.+ ++...... ......+.+++||+|+++
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~------~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvit 75 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALR------QTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVT 75 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEEC
T ss_pred CeEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEe
Confidence 6899999999999999999988 66 677776654443334433 11110000 012234568899999998
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=97.32 E-value=4.6e-05 Score=66.45 Aligned_cols=78 Identities=13% Similarity=-0.003 Sum_probs=54.1
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
.++| ++|.|||.|-.+.+++..|.+. +.+|+|.+|+.++..+.++..+....-......+....++|+||.+|
T Consensus 15 ~~~~-k~vlIlGaGGaarai~~aL~~~------~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~diiIN~t 87 (171)
T d1p77a1 15 LRPN-QHVLILGAGGATKGVLLPLLQA------QQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINAT 87 (171)
T ss_dssp CCTT-CEEEEECCSHHHHTTHHHHHHT------TCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECC
T ss_pred CCCC-CEEEEECCcHHHHHHHHHHccc------CceeeeccchHHHHHHHHHHHhhccccchhhhccccccccceeeecc
Confidence 4678 9999999999999999999877 77899999987666666665432100000112223467899999999
Q ss_pred CCchH
Q 014834 187 SDAAQ 191 (417)
Q Consensus 187 pd~~~ 191 (417)
|....
T Consensus 88 p~g~~ 92 (171)
T d1p77a1 88 SAGLS 92 (171)
T ss_dssp CC---
T ss_pred ccccc
Confidence 97654
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=97.30 E-value=0.0003 Score=63.15 Aligned_cols=80 Identities=18% Similarity=0.181 Sum_probs=59.8
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcC-cCCEEEE
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~-~ADIViL 184 (417)
..|+| ++|+|.|+|++|..+|+.|.+. |.+|++.+. +......+...|... .+.+++.. +|||++-
T Consensus 23 ~~L~g-k~v~IqG~G~VG~~~A~~L~~~------Gakvvv~d~-d~~~~~~~~~~g~~~-----~~~~~~~~~~~DI~iP 89 (201)
T d1c1da1 23 GSLDG-LTVLVQGLGAVGGSLASLAAEA------GAQLLVADT-DTERVAHAVALGHTA-----VALEDVLSTPCDVFAP 89 (201)
T ss_dssp CCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECS-CHHHHHHHHHTTCEE-----CCGGGGGGCCCSEEEE
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEecc-hHHHHHHHHhhcccc-----cCccccccccceeeec
Confidence 46899 9999999999999999999999 999876654 455567777788774 46666654 7999987
Q ss_pred ccCCchH-HHHHHHH
Q 014834 185 LISDAAQ-ADNYEKI 198 (417)
Q Consensus 185 avpd~~~-~~Vl~eI 198 (417)
|--...+ .+..+.|
T Consensus 90 cA~~~~I~~~~a~~i 104 (201)
T d1c1da1 90 CAMGGVITTEVARTL 104 (201)
T ss_dssp CSCSCCBCHHHHHHC
T ss_pred ccccccccHHHHhhh
Confidence 6444333 4455443
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=97.29 E-value=0.00066 Score=57.77 Aligned_cols=70 Identities=20% Similarity=0.281 Sum_probs=43.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhHHHHHHc----CceecCCC-cCCHHhhcCcCCEEEE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA----GFTEENGT-LGDIYETISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~~~A~~~----G~~~~~~~-~~s~~Ea~~~ADIViL 184 (417)
|||+|||.|.+|.++|..|... |+ ++.+.+....+....+.+. .+...+.. ..+..+.+++||+|++
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~------~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiVVi 75 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQ------GVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVIS 75 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEE
T ss_pred CeEEEECcCHHHHHHHHHHHhc------CCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHhccccEEEE
Confidence 8999999999999999999987 75 6666555433332222221 11100000 1122356899999999
Q ss_pred ccC
Q 014834 185 LIS 187 (417)
Q Consensus 185 avp 187 (417)
+..
T Consensus 76 taG 78 (146)
T d1hyha1 76 TLG 78 (146)
T ss_dssp CCS
T ss_pred ecc
Confidence 844
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=97.27 E-value=0.0002 Score=61.79 Aligned_cols=67 Identities=16% Similarity=0.177 Sum_probs=53.2
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccC
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavp 187 (417)
++ ++|.|||+|-.|.|++..|++. |. +|.|.+|+.++..+.+...+... ..+.. ..++|+||.+||
T Consensus 16 ~~-~~vlIlGaGGaarai~~aL~~~------g~~~I~I~nR~~~ka~~L~~~~~~~~----~~~~~--~~~~DliINaTp 82 (167)
T d1npya1 16 KN-AKVIVHGSGGMAKAVVAAFKNS------GFEKLKIYARNVKTGQYLAALYGYAY----INSLE--NQQADILVNVTS 82 (167)
T ss_dssp TT-SCEEEECSSTTHHHHHHHHHHT------TCCCEEEECSCHHHHHHHHHHHTCEE----ESCCT--TCCCSEEEECSS
T ss_pred CC-CeEEEECCCHHHHHHHHHHHHC------CCCEEEEecccHHHHHHHHHhhhhhh----hhccc--ccchhhheeccc
Confidence 56 8999999999999999999998 87 78889998776667777767653 22222 357999999999
Q ss_pred C
Q 014834 188 D 188 (417)
Q Consensus 188 d 188 (417)
.
T Consensus 83 i 83 (167)
T d1npya1 83 I 83 (167)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.26 E-value=0.00022 Score=62.39 Aligned_cols=69 Identities=16% Similarity=0.111 Sum_probs=46.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec--------------C-CCcCCHHhhc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--------------N-GTLGDIYETI 176 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~--------------~-~~~~s~~Ea~ 176 (417)
|||+|||+|-+|.++|..+ .. |++|+ +.+.+++..+... .|..+. . ....+..+..
T Consensus 1 MkI~ViGlG~vGl~~a~~~-a~------g~~V~-g~Din~~~v~~l~-~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~ 71 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLL-SL------QNEVT-IVDILPSKVDKIN-NGLSPIQDEYIEYYLKSKQLSIKATLDSKAAY 71 (196)
T ss_dssp CEEEEECCSHHHHHHHHHH-TT------TSEEE-EECSCHHHHHHHH-TTCCSSCCHHHHHHHHHSCCCEEEESCHHHHH
T ss_pred CEEEEECCChhHHHHHHHH-HC------CCcEE-EEECCHHHHHHHh-hcccccchhhHHHHhhhhhhhhhccchhhhhh
Confidence 6899999999999999877 46 89886 6666554443332 222110 0 0123556667
Q ss_pred CcCCEEEEccCCc
Q 014834 177 SGSDLVLLLISDA 189 (417)
Q Consensus 177 ~~ADIViLavpd~ 189 (417)
.++|+|+++||..
T Consensus 72 ~~~~ii~v~vpt~ 84 (196)
T d1dlja2 72 KEAELVIIATPTN 84 (196)
T ss_dssp HHCSEEEECCCCC
T ss_pred hccccccccCCcc
Confidence 8999999999843
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=97.23 E-value=0.00084 Score=53.91 Aligned_cols=84 Identities=14% Similarity=0.070 Sum_probs=59.1
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhH-HHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~-~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
-.++| ++|.|||.|..|.+-++.|.++ |.+|++.....++.. ..+.+.++....+. .+ ++-+.++++|+.
T Consensus 8 l~l~~-k~vlVvG~G~va~~ka~~ll~~------ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~-~~-~~dl~~~~lv~~ 78 (113)
T d1pjqa1 8 CQLRD-RDCLIVGGGDVAERKARLLLEA------GARLTVNALTFIPQFTVWANEGMLTLVEGP-FD-ETLLDSCWLAIA 78 (113)
T ss_dssp ECCBT-CEEEEECCSHHHHHHHHHHHHT------TBEEEEEESSCCHHHHHHHTTTSCEEEESS-CC-GGGGTTCSEEEE
T ss_pred EEeCC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEeccCChHHHHHHhcCCceeeccC-CC-HHHhCCCcEEee
Confidence 46889 9999999999999999999999 998888766544333 33433344331111 22 344778999999
Q ss_pred ccCCchHH-HHHHHH
Q 014834 185 LISDAAQA-DNYEKI 198 (417)
Q Consensus 185 avpd~~~~-~Vl~eI 198 (417)
++.+.... +++...
T Consensus 79 at~d~~~n~~i~~~a 93 (113)
T d1pjqa1 79 ATDDDTVNQRVSDAA 93 (113)
T ss_dssp CCSCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH
Confidence 99988774 455443
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=97.18 E-value=0.00027 Score=64.08 Aligned_cols=83 Identities=8% Similarity=0.124 Sum_probs=54.9
Q ss_pred CEEEEEcccch----HHHHHHHHHhhhhhhcCCcEEE-EEecCChhhHHHHHHcCceecCCCcCCHHhhcC--cCCEEEE
Q 014834 112 NQIGVIGWGSQ----GPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~G~m----G~AiA~~Lr~s~~~~~~G~~Vi-Vg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~--~ADIViL 184 (417)
.||||||+|.+ +..+...++.. ..+++++ +++++.++..+.+++.++.. .....+.+|+++ +-|+|++
T Consensus 17 irvgiIG~G~~~~~~~~~h~~ai~~~----~~~~~ivav~d~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~iD~V~i 91 (237)
T d2nvwa1 17 IRVGFVGLTSGKSWVAKTHFLAIQQL----SSQFQIVALYNPTLKSSLQTIEQLQLKH-ATGFDSLESFAQYKDIDMIVV 91 (237)
T ss_dssp EEEEEECCCSTTSHHHHTHHHHHHHT----TTTEEEEEEECSCHHHHHHHHHHTTCTT-CEEESCHHHHHHCTTCSEEEE
T ss_pred eEEEEEecCccccHHHHHHHHHHHhc----CCCeEEEEEEcCCHHHHHHHHHhccccc-ceeecchhhcccccccceeec
Confidence 58999999985 45556666543 1156665 44444445556667777542 112468888875 5789999
Q ss_pred ccCCchHHHHHHHHH
Q 014834 185 LISDAAQADNYEKIF 199 (417)
Q Consensus 185 avpd~~~~~Vl~eI~ 199 (417)
++|+..+.++.....
T Consensus 92 ~tp~~~h~~~~~~al 106 (237)
T d2nvwa1 92 SVKVPEHYEVVKNIL 106 (237)
T ss_dssp CSCHHHHHHHHHHHH
T ss_pred cCCCcchhhHHHHHH
Confidence 999999988776543
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.17 E-value=0.0017 Score=54.76 Aligned_cols=69 Identities=16% Similarity=0.129 Sum_probs=44.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhHHHHHH-------cCceecCCCcCCHHhhcCcCCEE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLV 182 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~~~A~~-------~G~~~~~~~~~s~~Ea~~~ADIV 182 (417)
+||+|||.|+.|.++|..|..+ |+ ++.+.+...++.+..+.+ ......-....+ .|.+++||+|
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~------~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d-~~~~~~adiV 73 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLN------LDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEII 73 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------SCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEE
T ss_pred CEEEEECcCHHHHHHHHHHHhc------CcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCC-HHHhccccEE
Confidence 6999999999999999999988 75 666665554333332221 111000000224 4688999999
Q ss_pred EEccC
Q 014834 183 LLLIS 187 (417)
Q Consensus 183 iLavp 187 (417)
+++..
T Consensus 74 vitag 78 (142)
T d1ojua1 74 VVTAG 78 (142)
T ss_dssp EECCC
T ss_pred EEecc
Confidence 99854
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.17 E-value=0.00078 Score=57.60 Aligned_cols=69 Identities=16% Similarity=0.172 Sum_probs=44.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHc-------CceecCCCcCCHHhhcCcCCEEE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA-------GFTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~-------G~~~~~~~~~s~~Ea~~~ADIVi 183 (417)
.||+|||.|..|.++|..|..+ ++ ++.+.+...+.....+.+. +..... ...+..+.+++||+|+
T Consensus 4 ~KI~IIGaG~VG~~~a~~l~~~------~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v-~~~~~~~~~~~advvv 76 (150)
T d1t2da1 4 AKIVLVGSGMIGGVMATLIVQK------NLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKV-SGSNTYDDLAGADVVI 76 (150)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCE-EEECCGGGGTTCSEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCCeEEEEeccCCcceeeecchhhhccccCCCcEE-EecccccccCCCcEEE
Confidence 6999999999999999988877 65 6666665544433333321 111000 0123456789999999
Q ss_pred EccC
Q 014834 184 LLIS 187 (417)
Q Consensus 184 Lavp 187 (417)
++.-
T Consensus 77 itag 80 (150)
T d1t2da1 77 VTAG 80 (150)
T ss_dssp ECCS
T ss_pred Eecc
Confidence 9854
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=97.17 E-value=0.0011 Score=55.82 Aligned_cols=69 Identities=16% Similarity=0.160 Sum_probs=44.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHc--C-----ceecCCCcCCHHhhcCcCCEEE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA--G-----FTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~--G-----~~~~~~~~~s~~Ea~~~ADIVi 183 (417)
+||+|||+|.+|.++|..|... ++ ++++.+...+.....+.+. . ....-....+.+ .+++||+|+
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~------~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~-~~~~advvv 74 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAK------ELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYA-DTANSDVIV 74 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGG-GGTTCSEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHH-HhcCCCEEE
Confidence 6999999999999999999887 66 7666665544433333331 1 110000023444 578999999
Q ss_pred EccC
Q 014834 184 LLIS 187 (417)
Q Consensus 184 Lavp 187 (417)
++..
T Consensus 75 itag 78 (142)
T d1uxja1 75 VTSG 78 (142)
T ss_dssp ECCS
T ss_pred Eeee
Confidence 9873
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.14 E-value=0.00098 Score=56.54 Aligned_cols=66 Identities=17% Similarity=0.219 Sum_probs=43.2
Q ss_pred EEEEEcc-cchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhHHHHHHcC----ceecCC--CcCCHHhhcCcCCEEE
Q 014834 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAG----FTEENG--TLGDIYETISGSDLVL 183 (417)
Q Consensus 113 kIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~~~A~~~G----~~~~~~--~~~s~~Ea~~~ADIVi 183 (417)
||+|||+ |++|.++|..|... |+ ++.+.+.... ...+.+.- +..... ...+..|.+++||+|+
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~------~~~~elvLiDi~~~--~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivV 73 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNS------PLVSRLTLYDIAHT--PGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVV 73 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTC------TTCSEEEEEESSSH--HHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEE
T ss_pred eEEEECCCChHHHHHHHHHHhC------CccceEEEEecccc--chhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEE
Confidence 8999995 99999999999988 76 5655554432 33333321 110000 0235678899999999
Q ss_pred Ecc
Q 014834 184 LLI 186 (417)
Q Consensus 184 Lav 186 (417)
++.
T Consensus 74 ita 76 (144)
T d1mlda1 74 IPA 76 (144)
T ss_dssp ECC
T ss_pred ECC
Confidence 974
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=97.13 E-value=0.00015 Score=63.74 Aligned_cols=95 Identities=13% Similarity=0.063 Sum_probs=65.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcC--ceecCCCcCCHHhhcCcCCEEEEcc--C
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG--FTEENGTLGDIYETISGSDLVLLLI--S 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G--~~~~~~~~~s~~Ea~~~ADIViLav--p 187 (417)
-||.|||.|.-|..-++..+.- |-+|.+.+.+.++..+.....+ +......-..+++.+++||+||-++ |
T Consensus 33 a~V~ViGaGvaG~~A~~~A~~l------GA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalip 106 (168)
T d1pjca1 33 GKVVILGGGVVGTEAAKMAVGL------GAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVP 106 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCT
T ss_pred cEEEEECCChHHHHHHHHHhhC------CCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecC
Confidence 5999999999999988888887 9999988876444332222222 1110001113678899999999875 4
Q ss_pred CchHHHHHH-HHHhcCCCCcEEEEec
Q 014834 188 DAAQADNYE-KIFSCMKPNSILGLSH 212 (417)
Q Consensus 188 d~~~~~Vl~-eI~~~lk~gaiLi~a~ 212 (417)
-...+.++. +....||||++|+|.+
T Consensus 107 G~~aP~lIt~~mv~~Mk~GSVIVDva 132 (168)
T d1pjca1 107 GRRAPILVPASLVEQMRTGSVIVDVA 132 (168)
T ss_dssp TSSCCCCBCHHHHTTSCTTCEEEETT
T ss_pred CcccCeeecHHHHhhcCCCcEEEEee
Confidence 444445554 6788899999999775
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.13 E-value=0.00059 Score=56.91 Aligned_cols=87 Identities=17% Similarity=0.152 Sum_probs=66.5
Q ss_pred CEEEEEcc----cchHHHHHHHHHhhhhhhcCC-cEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~----G~mG~AiA~~Lr~s~~~~~~G-~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
++|+|||. |..|..+.++|++. | .+|+-.+.+... =.|... ..++.|+=...|++++++
T Consensus 9 ksIAVVGaS~~~~~~g~~v~~~L~~~------~~g~v~pVnP~~~~------i~G~~~----y~sl~dlp~~vDlvvi~v 72 (129)
T d2csua1 9 KGIAVIGASNDPKKLGYEVFKNLKEY------KKGKVYPVNIKEEE------VQGVKA----YKSVKDIPDEIDLAIIVV 72 (129)
T ss_dssp SEEEEETCCSCTTSHHHHHHHHHTTC------CSSEEEEECSSCSE------ETTEEC----BSSTTSCSSCCSEEEECS
T ss_pred CeEEEEccCCCCCCcHHHHHHHHHHc------CCCcEEEeccCccc------cCCeEe----ecchhhcCCCCceEEEec
Confidence 89999996 88999999999876 5 466655543221 157765 678888878899999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCch
Q 014834 187 SDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiLi~a~G~~ 215 (417)
|+....++++++... .-..++++++||.
T Consensus 73 p~~~~~~~~~~~~~~-g~~~~vi~s~Gf~ 100 (129)
T d2csua1 73 PKRFVKDTLIQCGEK-GVKGVVIITAGFG 100 (129)
T ss_dssp CHHHHHHHHHHHHHH-TCCEEEECCCSST
T ss_pred ChHHhHHHHHHHHHc-CCCEEEEeccccc
Confidence 999999999886543 2345788999984
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.07 E-value=3e-05 Score=66.95 Aligned_cols=78 Identities=14% Similarity=0.250 Sum_probs=49.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcC--cCCEEEEccCCc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~--~ADIViLavpd~ 189 (417)
.||||||+|.||..++.+|.+.. +. ..-.++..+.. + +.+...++. ..+.+|++. +.|+|++++|+.
T Consensus 8 ~kv~iIG~G~~g~~h~~~l~~~~-~~--~~~~~~~~~~~-~--~~~~~~~~~-----~~~~~e~l~~~~iD~V~I~tp~~ 76 (172)
T d1lc0a1 8 FGVVVVGVGRAGSVRLRDLKDPR-SA--AFLNLIGFVSR-R--ELGSLDEVR-----QISLEDALRSQEIDVAYICSESS 76 (172)
T ss_dssp EEEEEECCSHHHHHHHHHHTSHH-HH--TTEEEEEEECS-S--CCCEETTEE-----BCCHHHHHHCSSEEEEEECSCGG
T ss_pred cEEEEEcCCHHHHHHHHHHHhCC-CC--cEEEEEeccch-H--HHHHhhccC-----cCCHHHHHhCCCcchhhhccccc
Confidence 48999999999999999887641 11 11112232221 1 111122333 347888765 568999999999
Q ss_pred hHHHHHHHHHh
Q 014834 190 AQADNYEKIFS 200 (417)
Q Consensus 190 ~~~~Vl~eI~~ 200 (417)
.+.++......
T Consensus 77 ~H~~~~~~al~ 87 (172)
T d1lc0a1 77 SHEDYIRQFLQ 87 (172)
T ss_dssp GHHHHHHHHHH
T ss_pred ccccccccccc
Confidence 99888776544
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=97.06 E-value=0.00067 Score=57.02 Aligned_cols=69 Identities=20% Similarity=0.175 Sum_probs=44.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhHHHHHHc--C--ceecCC--CcCCHHhhcCcCCEEE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--G--FTEENG--TLGDIYETISGSDLVL 183 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~~~A~~~--G--~~~~~~--~~~s~~Ea~~~ADIVi 183 (417)
+||+|||.|++|.+++..|..+ ++ ++.+.+....+....+... - +...+. ...+..+.+++||+|+
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~------~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvv 74 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEK------QLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVI 74 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEE
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEE
Confidence 5899999999999999999988 65 7766665544333222221 0 000000 0124456789999999
Q ss_pred Ecc
Q 014834 184 LLI 186 (417)
Q Consensus 184 Lav 186 (417)
++.
T Consensus 75 ita 77 (142)
T d1guza1 75 ITA 77 (142)
T ss_dssp ECC
T ss_pred EEE
Confidence 984
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=97.03 E-value=0.00064 Score=57.27 Aligned_cols=69 Identities=23% Similarity=0.320 Sum_probs=44.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhHHHHHH----cCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~~~A~~----~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
+||+|||.|++|.++|..|..+ ++ ++.+.+...++....+.+ ..+........+..+.+++||+|+++
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~------~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvit 74 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMK------GFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVA 74 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEEC
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCCCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEe
Confidence 6999999999999999999888 65 666666554433333332 11110000012335668999999998
Q ss_pred c
Q 014834 186 I 186 (417)
Q Consensus 186 v 186 (417)
.
T Consensus 75 a 75 (140)
T d1a5za1 75 A 75 (140)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.02 E-value=0.0011 Score=57.17 Aligned_cols=68 Identities=21% Similarity=0.150 Sum_probs=44.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhHHHHHHc-------CceecCCCcCCHHhhcCcCCEE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA-------GFTEENGTLGDIYETISGSDLV 182 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~~~A~~~-------G~~~~~~~~~s~~Ea~~~ADIV 182 (417)
.||+|||.|++|.++|..|... |+ ++.+.+...++....+.+. +... .-...+ .+.+++||+|
T Consensus 20 ~KI~IIGaG~VG~~~A~~l~~~------~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~-~~~~~d-~~~~~~adiv 91 (159)
T d2ldxa1 20 CKITVVGVGDVGMACAISILLK------GLADELALVDADTDKLRGEALDLQHGSLFLSTPK-IVFGKD-YNVSANSKLV 91 (159)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT------TSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCE-EEEESS-GGGGTTEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCchhhhccHHHHhCcchhcCCCe-EEeccc-hhhhccccEE
Confidence 7999999999999999999988 76 6766665533333232221 1110 001224 4556899999
Q ss_pred EEccC
Q 014834 183 LLLIS 187 (417)
Q Consensus 183 iLavp 187 (417)
+++..
T Consensus 92 vitag 96 (159)
T d2ldxa1 92 IITAG 96 (159)
T ss_dssp EECCS
T ss_pred EEecc
Confidence 99753
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.99 E-value=0.001 Score=58.43 Aligned_cols=90 Identities=16% Similarity=0.172 Sum_probs=57.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChh-hHHHHHHc-----------------CceecCCCcCCH
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAA-----------------GFTEENGTLGDI 172 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~-s~~~A~~~-----------------G~~~~~~~~~s~ 172 (417)
|-||||.|+|.||+.+++.|.++ .+++|+..++..+. ........ ++.. ..+.
T Consensus 1 MIKVaINGfGRIGR~v~Ral~~~-----~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v----~g~~ 71 (178)
T d1b7go1 1 MVNVAVNGYGTIGKRVADAIIKQ-----PDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPV----AGTV 71 (178)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTC-----TTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCC----CCCH
T ss_pred CeEEEEECCCHHHHHHHHHHHhC-----CCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceec----CCch
Confidence 56899999999999999999876 14676554544322 22222222 2222 2456
Q ss_pred HhhcCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 173 ~Ea~~~ADIViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
.++..++|+|+-|||.....+-.+ .+++.|+=+++++
T Consensus 72 ~~~~~~vDiViecTG~f~~~e~a~---~hl~~G~KvIi~~ 108 (178)
T d1b7go1 72 EDLIKTSDIVVDTTPNGVGAQYKP---IYLQLQRNAIFQG 108 (178)
T ss_dssp HHHHHHCSEEEECCSTTHHHHHHH---HHHHTTCEEEECT
T ss_pred hhhhhcCCEEEECCCCcCCHHHHH---HHHHcCCEEEEEC
Confidence 777788999999999876655443 3444555444443
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=96.93 E-value=0.00091 Score=57.93 Aligned_cols=73 Identities=19% Similarity=0.165 Sum_probs=47.0
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhHHHHHHc--CceecC--C--CcCCHHhhcC
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--GFTEEN--G--TLGDIYETIS 177 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~~~A~~~--G~~~~~--~--~~~s~~Ea~~ 177 (417)
..++. +||+|||+|++|.++|..|... |+ ++++.+...+.....+.+. ...... . ...+ .+.++
T Consensus 16 ~~~~~-~KV~IIGaG~VG~~~A~~l~~~------~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d-~~~~~ 87 (160)
T d1i0za1 16 ATVPN-NKITVVGVGQVGMACAISILGK------SLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKD-YSVTA 87 (160)
T ss_dssp CCCCS-SEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSS-GGGGT
T ss_pred ccCCC-CeEEEECCCHHHHHHHHHHHhc------CCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccc-hhhcc
Confidence 44555 8999999999999999999998 87 6766665544433333221 110000 0 0123 45688
Q ss_pred cCCEEEEcc
Q 014834 178 GSDLVLLLI 186 (417)
Q Consensus 178 ~ADIViLav 186 (417)
+||+|+++.
T Consensus 88 ~adiVVitA 96 (160)
T d1i0za1 88 NSKIVVVTA 96 (160)
T ss_dssp TCSEEEECC
T ss_pred cccEEEEec
Confidence 999999963
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.92 E-value=0.0038 Score=52.98 Aligned_cols=93 Identities=14% Similarity=0.068 Sum_probs=64.7
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcCceec-CCCcCCHHhhc--------Cc
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI--------SG 178 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G~~~~-~~~~~s~~Ea~--------~~ 178 (417)
+| .+|.|+|+|.+|...++-++.. |. +|++.++. +...+.|++.|+... +....+..+.. ..
T Consensus 26 ~g-d~VlI~G~G~iG~~~~~~a~~~------G~~~Vi~~d~~-~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g 97 (171)
T d1pl8a2 26 LG-HKVLVCGAGPIGMVTLLVAKAM------GAAQVVVTDLS-ATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCK 97 (171)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEEESC-HHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSC
T ss_pred CC-CEEEEECCCccHHHHHHHHHHc------CCceEEeccCC-HHHHHHHHHhCCcccccccccccccccccccccCCCC
Confidence 46 8999999999999999999988 88 67665554 566789999996421 11112333322 25
Q ss_pred CCEEEEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 179 ADIViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
+|+||-++.... .++.....+++|-.+++.+
T Consensus 98 ~Dvvid~~G~~~---~~~~a~~~~~~gG~iv~~G 128 (171)
T d1pl8a2 98 PEVTIECTGAEA---SIQAGIYATRSGGTLVLVG 128 (171)
T ss_dssp CSEEEECSCCHH---HHHHHHHHSCTTCEEEECS
T ss_pred ceEEEeccCCch---hHHHHHHHhcCCCEEEEEe
Confidence 899999998743 4555556777887766544
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=96.75 E-value=0.0012 Score=58.66 Aligned_cols=94 Identities=14% Similarity=0.150 Sum_probs=63.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecC---CCcC------------------
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN---GTLG------------------ 170 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~---~~~~------------------ 170 (417)
-+|.|||.|..|..-++-.+.- |-+|.+.+.+.. ..+..+..+-.... ....
T Consensus 30 a~VvViGaGvaG~~Aa~~A~~l------GA~V~v~D~~~~-~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~ 102 (183)
T d1l7da1 30 ARVLVFGVGVAGLQAIATAKRL------GAVVMATDVRAA-TKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRK 102 (183)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCST-THHHHHHTTCEECCC-----------------------C
T ss_pred cEEEEEcCcHHHHHHHHHHHHc------CCEEEEEeccHH-HHHHHHHhhcceEEEeccccccccccccchhhcCHHHHH
Confidence 4899999999999887777776 989988876644 45555555432100 0000
Q ss_pred ----CHHhhcCcCCEEEEc--cCCchHHHHHH-HHHhcCCCCcEEEEec
Q 014834 171 ----DIYETISGSDLVLLL--ISDAAQADNYE-KIFSCMKPNSILGLSH 212 (417)
Q Consensus 171 ----s~~Ea~~~ADIViLa--vpd~~~~~Vl~-eI~~~lk~gaiLi~a~ 212 (417)
.+.+.+++||+||-+ +|-...+.++. +....||||++|+|.+
T Consensus 103 ~~~~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDva 151 (183)
T d1l7da1 103 KQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLA 151 (183)
T ss_dssp CHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred HHHHHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEe
Confidence 123458899999976 45444455554 6788999999999876
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=96.75 E-value=0.001 Score=55.77 Aligned_cols=118 Identities=14% Similarity=0.176 Sum_probs=79.5
Q ss_pred CEEEEEcc----cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccC
Q 014834 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~----G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavp 187 (417)
|+|+|||. +..|..+.++|++. |+++...+.+... ..-.|... ..++.|+-..-|+|++++|
T Consensus 14 ksIAVVGaS~~~~k~g~~v~~~L~~~------g~~~~~v~~~~~~----~~i~g~~~----~~~l~~i~~~iD~v~v~~p 79 (136)
T d1iuka_ 14 KTIAVLGAHKDPSRPAHYVPRYLREQ------GYRVLPVNPRFQG----EELFGEEA----VASLLDLKEPVDILDVFRP 79 (136)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHT------TCEEEEECGGGTT----SEETTEEC----BSSGGGCCSCCSEEEECSC
T ss_pred CeEEEEeecCCCCCchHHHHHHHhcC------CCCceEEEecccc----ceeeceec----ccchhhccCCCceEEEecc
Confidence 89999997 68999999999999 9988766543110 01146654 5678887778899999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHh
Q 014834 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYV 249 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~ 249 (417)
+....+++++.... ... .+.+..|+.-..+.+ +.-..+++|| +||++.-.-.++|.
T Consensus 80 ~~~v~~~v~~~~~~-g~k-~i~~q~G~~~~e~~~--~a~~~Gi~vV--~~~C~~ie~~rl~~ 135 (136)
T d1iuka_ 80 PSALMDHLPEVLAL-RPG-LVWLQSGIRHPEFEK--ALKEAGIPVV--ADRCLMVEHKRLFR 135 (136)
T ss_dssp HHHHTTTHHHHHHH-CCS-CEEECTTCCCHHHHH--HHHHTTCCEE--ESCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhh-CCC-eEEEecCccCHHHHH--HHHHcCCEEE--cCCccHHHHHHhhC
Confidence 99999999886543 233 455667763211111 0112355565 78888776666653
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=96.75 E-value=0.0011 Score=56.29 Aligned_cols=68 Identities=24% Similarity=0.219 Sum_probs=43.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhhHHHHHH--cC--ceecCC--CcCCHHhhcCcCCEEE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AG--FTEENG--TLGDIYETISGSDLVL 183 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s~~~A~~--~G--~~~~~~--~~~s~~Ea~~~ADIVi 183 (417)
.||+|||.|++|.++|..|..+ |+ ++.+.+....+....+.+ +. +.. .. ...+..+.+++||+|+
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~------~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~-~~~i~~~~~~~~~~daDvVV 74 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQR------GIAREIVLEDIAKERVEAEVLDMQHGSSFYP-TVSIDGSDDPEICRDADMVV 74 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSSHHHHHHHHHHHHHTGGGST-TCEEEEESCGGGGTTCSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCcEEEEEEeccccchhHHHHHHhccccCC-CceeecCCCHHHhhCCcEEE
Confidence 5899999999999999999988 76 666666554333222221 11 110 00 0122345688999999
Q ss_pred Ecc
Q 014834 184 LLI 186 (417)
Q Consensus 184 Lav 186 (417)
++.
T Consensus 75 ita 77 (143)
T d1llda1 75 ITA 77 (143)
T ss_dssp ECC
T ss_pred Eec
Confidence 984
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=96.71 E-value=0.00056 Score=59.47 Aligned_cols=79 Identities=15% Similarity=0.120 Sum_probs=52.8
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhh---HHHHHHc----CceecCCCcCC---HHh
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRS---FAEARAA----GFTEENGTLGD---IYE 174 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s---~~~A~~~----G~~~~~~~~~s---~~E 174 (417)
..++| ++|.|||+|-+|.+++..|.+. |. ++++.+|+.++. ...+++. .....-....+ ..+
T Consensus 14 ~~l~~-k~vlIlGaGGaarai~~al~~~------g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (182)
T d1vi2a1 14 FDIKG-KTMVLLGAGGASTAIGAQGAIE------GLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAE 86 (182)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHH
T ss_pred CCcCC-CEEEEECCcHHHHHHHHHHhhc------CCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhh
Confidence 35788 9999999999999999999998 87 788888875432 2223222 11110000112 345
Q ss_pred hcCcCCEEEEccCCchH
Q 014834 175 TISGSDLVLLLISDAAQ 191 (417)
Q Consensus 175 a~~~ADIViLavpd~~~ 191 (417)
....+|+||.+||....
T Consensus 87 ~~~~~diiIN~Tp~G~~ 103 (182)
T d1vi2a1 87 ALASADILTNGTKVGMK 103 (182)
T ss_dssp HHHTCSEEEECSSTTST
T ss_pred hhcccceeccccCCccc
Confidence 67889999999996543
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=96.71 E-value=0.0054 Score=48.35 Aligned_cols=77 Identities=19% Similarity=0.217 Sum_probs=56.6
Q ss_pred CCEEEEEcccchH-HHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccC-C
Q 014834 111 INQIGVIGWGSQG-PAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS-D 188 (417)
Q Consensus 111 mkkIgIIG~G~mG-~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavp-d 188 (417)
+++|=|||.|-.| .++|+.|++. |++|...++..+...+..++.|+... .....+-+++.|+||...- +
T Consensus 8 ~~~ihfiGigG~GMs~LA~~L~~~------G~~VsGSD~~~~~~~~~L~~~Gi~v~---~g~~~~~i~~~d~vV~S~AI~ 78 (96)
T d1p3da1 8 VQQIHFIGIGGAGMSGIAEILLNE------GYQISGSDIADGVVTQRLAQAGAKIY---IGHAEEHIEGASVVVVSSAIK 78 (96)
T ss_dssp CCEEEEETTTSTTHHHHHHHHHHH------TCEEEEEESCCSHHHHHHHHTTCEEE---ESCCGGGGTTCSEEEECTTSC
T ss_pred CCEEEEEEECHHHHHHHHHHHHhC------CCEEEEEeCCCChhhhHHHHCCCeEE---ECCccccCCCCCEEEECCCcC
Confidence 4899999999999 6779999999 99998777765666677778898753 3344555789999888533 2
Q ss_pred chHHHHHH
Q 014834 189 AAQADNYE 196 (417)
Q Consensus 189 ~~~~~Vl~ 196 (417)
....++..
T Consensus 79 ~~npel~~ 86 (96)
T d1p3da1 79 DDNPELVT 86 (96)
T ss_dssp TTCHHHHH
T ss_pred CCCHHHHH
Confidence 33444443
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.67 E-value=0.0028 Score=53.34 Aligned_cols=87 Identities=10% Similarity=0.043 Sum_probs=64.6
Q ss_pred CEEEEEcc----cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccC
Q 014834 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~----G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavp 187 (417)
++|+|||. +..|..++.+|++. |++|+-.+.+. . .=.|... ..+++|+-..-|+|++++|
T Consensus 20 ksIAVVGaS~~~~~~g~~v~~~L~~~------g~~v~pVnP~~-~-----~i~G~~~----~~sl~dlp~~iD~v~i~vp 83 (139)
T d2d59a1 20 KKIALVGASPKPERDANIVMKYLLEH------GYDVYPVNPKY-E-----EVLGRKC----YPSVLDIPDKIEVVDLFVK 83 (139)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHT------TCEEEEECTTC-S-----EETTEEC----BSSGGGCSSCCSEEEECSC
T ss_pred CeEEEEeecCCCCCchHHHHHHHHHC------CCEEEEECCcc-c-----ccCCCcc----cccccccCccceEEEEEeC
Confidence 89999996 57899999999999 99876544432 1 1257665 6788888888999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecCch
Q 014834 188 DAAQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~gaiLi~a~G~~ 215 (417)
+..+.++++++... ....++...++++
T Consensus 84 ~~~~~~~~~e~~~~-g~k~v~~~~G~~~ 110 (139)
T d2d59a1 84 PKLTMEYVEQAIKK-GAKVVWFQYNTYN 110 (139)
T ss_dssp HHHHHHHHHHHHHH-TCSEEEECTTCCC
T ss_pred HHHHHHHHHHHHHh-CCCEEEEeccccC
Confidence 99999999986543 2333444455554
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.67 E-value=0.0022 Score=54.85 Aligned_cols=93 Identities=12% Similarity=0.094 Sum_probs=60.6
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec-CCCcCCHHhhcC-----cCCE
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-----GSDL 181 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~-~~~~~s~~Ea~~-----~ADI 181 (417)
-.| .+|.|+|+|.+|...++-++.. |..+++..+..+...+.+++.|.... +-...+..+.++ ..|+
T Consensus 27 ~~g-~~VlI~G~G~iG~~~~~~ak~~------g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~ 99 (174)
T d1f8fa2 27 TPA-SSFVTWGAGAVGLSALLAAKVC------GASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNF 99 (174)
T ss_dssp CTT-CEEEEESCSHHHHHHHHHHHHH------TCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEE
T ss_pred CCC-CEEEEeCCCHHHhhhhhccccc------ccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcE
Confidence 356 8999999999999999999988 88655555555566788899886421 111123333332 2699
Q ss_pred EEEccCCchHHHHHHHHHhcCCCCcEEEE
Q 014834 182 VLLLISDAAQADNYEKIFSCMKPNSILGL 210 (417)
Q Consensus 182 ViLavpd~~~~~Vl~eI~~~lk~gaiLi~ 210 (417)
||-++..... ++.....++++-.+++
T Consensus 100 vid~~G~~~~---~~~~~~~~~~~G~i~~ 125 (174)
T d1f8fa2 100 ALESTGSPEI---LKQGVDALGILGKIAV 125 (174)
T ss_dssp EEECSCCHHH---HHHHHHTEEEEEEEEE
T ss_pred EEEcCCcHHH---HHHHHhcccCceEEEE
Confidence 9998875433 3333445566655543
|
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.63 E-value=0.0024 Score=52.90 Aligned_cols=94 Identities=17% Similarity=0.144 Sum_probs=66.5
Q ss_pred hhccCCCEEEEEcc----------cchHHHHHHHHHhhhhhhcCCcEEEEEecCChh------hHHHHH----HcCceec
Q 014834 106 DAFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR------SFAEAR----AAGFTEE 165 (417)
Q Consensus 106 ~~l~gmkkIgIIG~----------G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~------s~~~A~----~~G~~~~ 165 (417)
..+++ +||+|+|+ ++....++..|... |.+|.+++..-+. ..+... ..+...
T Consensus 9 ~~~~~-kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~------g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~- 80 (136)
T d1mv8a3 9 TSHDT-RKVGLLGLSFKAGTDDLRESPLVELAEMLIGK------GYELRIFDRNVEYARVHGANKEYIESKIPHVSSLL- 80 (136)
T ss_dssp TTSSC-CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHT------TCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTB-
T ss_pred HhcCC-CEEEEEEEEECCCCcchhcCHHHHHHHHHhhh------hccccccCCCCCHHHHhhhhhhhhhhcccccccee-
Confidence 55677 99999998 67888999999988 9998877642110 001101 011121
Q ss_pred CCCcCCHHhhcCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 166 NGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 166 ~~~~~s~~Ea~~~ADIViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
+.++.++++++|+|+++++.....+ +...++++++|++.-|+
T Consensus 81 ---~~~~~e~i~~~D~ivi~t~h~~f~~----l~~~~~~~~~I~D~~~~ 122 (136)
T d1mv8a3 81 ---VSDLDEVVASSDVLVLGNGDELFVD----LVNKTPSGKKLVDLVGF 122 (136)
T ss_dssp ---CSCHHHHHHHCSEEEECSCCGGGHH----HHHSCCTTCEEEESSSC
T ss_pred ---ehhhhhhhhhceEEEEEeCCHHHHH----HHHHhcCCCEEEECCCC
Confidence 4689999999999999999887654 34456778889998876
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.61 E-value=0.011 Score=49.68 Aligned_cols=93 Identities=15% Similarity=0.109 Sum_probs=62.0
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec---CCCcCCHHhh---c-----
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE---NGTLGDIYET---I----- 176 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~---~~~~~s~~Ea---~----- 176 (417)
-.| .+|.|+|+|.+|...++.++.. |.+|++..++ +...+.+++.|.... +....+..+. +
T Consensus 25 ~~g-~~vlV~G~G~vG~~~~~~ak~~------Ga~vi~v~~~-~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g 96 (170)
T d1e3ja2 25 QLG-TTVLVIGAGPIGLVSVLAAKAY------GAFVVCTARS-PRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIG 96 (170)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESC-HHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSS
T ss_pred CCC-CEEEEEcccccchhhHhhHhhh------cccccccchH-HHHHHHHHHcCCcEEEeccccccccchhhhhhhcccc
Confidence 356 8999999999999999999988 9988776665 455788888886320 1111122221 1
Q ss_pred CcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 177 ~~ADIViLavpd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
..+|+||-++.... .++.....++++-.++..
T Consensus 97 ~g~D~vid~~g~~~---~~~~a~~~~~~~G~iv~~ 128 (170)
T d1e3ja2 97 DLPNVTIDCSGNEK---CITIGINITRTGGTLMLV 128 (170)
T ss_dssp SCCSEEEECSCCHH---HHHHHHHHSCTTCEEEEC
T ss_pred cCCceeeecCCChH---HHHHHHHHHhcCCceEEE
Confidence 34799999987643 344444567777766644
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.61 E-value=0.0015 Score=62.08 Aligned_cols=93 Identities=17% Similarity=0.103 Sum_probs=64.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHH---HHHHcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFA---EARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~---~A~~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
-++++|||.|.|+..+++.|.... .+ +|.|++|+.++..+ .....++.. ..+.++++.+||+|+.+|
T Consensus 125 ~~~l~iiGaG~QA~~~~~al~~~~-----~i~~i~v~~r~~e~~~~~~~~~~~~~~~~----~~~~~~a~~~aDiV~taT 195 (320)
T d1omoa_ 125 SSVFGFIGCGTQAYFQLEALRRVF-----DIGEVKAYDVREKAAKKFVSYCEDRGISA----SVQPAEEASRCDVLVTTT 195 (320)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHS-----CCCEEEEECSSHHHHHHHHHHHHHTTCCE----EECCHHHHTSSSEEEECC
T ss_pred ccEEEEecCcccHHHHHHHHHHHh-----hhhhcccccCCHHHHHHHHHHHHhcCCcc----ccchhhhhccccEEEEec
Confidence 378999999999999999988651 33 78888887544332 333445544 456788899999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCchh
Q 014834 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLL 216 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiLi~a~G~~i 216 (417)
+...- +++ ...++||+.|...+....
T Consensus 196 ~s~~P--~~~--~~~l~~G~hv~~iGs~~p 221 (320)
T d1omoa_ 196 PSRKP--VVK--AEWVEEGTHINAIGADGP 221 (320)
T ss_dssp CCSSC--CBC--GGGCCTTCEEEECSCCST
T ss_pred cCccc--ccc--hhhcCCCCeEeecCCccc
Confidence 84221 221 245889998876665543
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=96.57 E-value=0.0067 Score=50.50 Aligned_cols=74 Identities=15% Similarity=0.048 Sum_probs=51.8
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhH---HHHHHcCceecCCCcCCHH----hhcCcCCEEEEc
Q 014834 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF---AEARAAGFTEENGTLGDIY----ETISGSDLVLLL 185 (417)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~---~~A~~~G~~~~~~~~~s~~----Ea~~~ADIViLa 185 (417)
.|-|+|||..|..+++.|.+. |.+|++.+....+.. +.....|+....|...+.+ .-+++||.|+++
T Consensus 5 HiII~G~g~~g~~l~~~L~~~------~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~ 78 (153)
T d1id1a_ 5 HFIVCGHSILAINTILQLNQR------GQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILAL 78 (153)
T ss_dssp CEEEECCSHHHHHHHHHHHHT------TCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHc------CCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEc
Confidence 699999999999999999999 998877765543322 3333456644323333322 237789999999
Q ss_pred cCCchHH
Q 014834 186 ISDAAQA 192 (417)
Q Consensus 186 vpd~~~~ 192 (417)
+++....
T Consensus 79 ~~~d~~n 85 (153)
T d1id1a_ 79 SDNDADN 85 (153)
T ss_dssp SSCHHHH
T ss_pred cccHHHH
Confidence 9987654
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.48 E-value=0.0011 Score=57.09 Aligned_cols=77 Identities=16% Similarity=0.161 Sum_probs=53.3
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcC----cee-cCCCcCCHHhhcCcCC
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG----FTE-ENGTLGDIYETISGSD 180 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G----~~~-~~~~~~s~~Ea~~~AD 180 (417)
..++| |+|.|||.|-.+.+++..|.+. | +|.|.+|+.++..+.+.... ... ..-...+.......+|
T Consensus 14 ~~~~~-k~vlIlGaGG~arai~~aL~~~------~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 85 (177)
T d1nvta1 14 GRVKD-KNIVIYGAGGAARAVAFELAKD------N-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVD 85 (177)
T ss_dssp CCCCS-CEEEEECCSHHHHHHHHHHTSS------S-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCC
T ss_pred CCcCC-CEEEEECCcHHHHHHHHHHccc------c-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhh
Confidence 34789 9999999999999999999766 6 78899997555444443221 000 0000234556678899
Q ss_pred EEEEccCCch
Q 014834 181 LVLLLISDAA 190 (417)
Q Consensus 181 IViLavpd~~ 190 (417)
+||.++|...
T Consensus 86 liIn~tp~g~ 95 (177)
T d1nvta1 86 IIINATPIGM 95 (177)
T ss_dssp EEEECSCTTC
T ss_pred hhccCCcccc
Confidence 9999999644
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=96.48 E-value=0.0041 Score=50.62 Aligned_cols=73 Identities=11% Similarity=0.129 Sum_probs=57.7
Q ss_pred CEEEEEcc----cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccC
Q 014834 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~----G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavp 187 (417)
|+|+|||. |..|..+.++|++. |++|+-.+.+. .. =.|... ..++.|+=..-|++++++|
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~------g~~V~pVnP~~-~~-----i~G~~~----y~sl~~lp~~~D~vvi~vp 65 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSK------GFEVLPVNPNY-DE-----IEGLKC----YRSVRELPKDVDVIVFVVP 65 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHT------TCEEEEECTTC-SE-----ETTEEC----BSSGGGSCTTCCEEEECSC
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHC------CCEEEEEcccc-cc-----ccCccc----cccchhccccceEEEEEeC
Confidence 78999995 57799999999999 99876444332 21 147765 6788888778899999999
Q ss_pred CchHHHHHHHHHh
Q 014834 188 DAAQADNYEKIFS 200 (417)
Q Consensus 188 d~~~~~Vl~eI~~ 200 (417)
+....++++++..
T Consensus 66 ~~~~~~~l~~~~~ 78 (116)
T d1y81a1 66 PKVGLQVAKEAVE 78 (116)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998654
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.48 E-value=0.0036 Score=53.17 Aligned_cols=120 Identities=13% Similarity=0.088 Sum_probs=64.7
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCc---EEEEEecCChh--hHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGSR--SFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 111 mkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~---~ViVg~r~~s~--s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
||||||||. |..|.-+.+.|.+.. .+ ++.....+.+. ............ .....+..+++|++|+
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~-----~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~----~~~~~~~~~~~DivF~ 71 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEER-----DFDAIRPVFFSTSQLGQAAPSFGGTTGTLQ----DAFDLEALKALDIIVT 71 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT-----GGGGSEEEEEESSSTTSBCCGGGTCCCBCE----ETTCHHHHHTCSEEEE
T ss_pred CcEEEEECCccHHHHHHHHHHHhCC-----CCCeeEEEEeeccccccccccccCCceeee----cccchhhhhcCcEEEE
Confidence 799999997 999999998765430 22 44433322111 111111111110 1112235689999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhc
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G 251 (417)
++|.....++.+++... ..+.+|++.++. | .+.+ +|..+-|---...+.....+|
T Consensus 72 a~~~~~s~~~~~~~~~~-g~~~~VID~Ss~---f------R~~~--dvplviPEVN~~~i~~~~~~g 126 (146)
T d1t4ba1 72 CQGGDYTNEIYPKLRES-GWQGYWIDAASS---L------RMKD--DAIIILDPVNQDVITDGLNNG 126 (146)
T ss_dssp CSCHHHHHHHHHHHHHT-TCCCEEEECSST---T------TTCT--TEEEECHHHHHHHHHHHHHTT
T ss_pred ecCchHHHHhhHHHHhc-CCCeecccCCcc---c------ccCC--CCcEECCCcCHHHHHHHHHcC
Confidence 99988777777766542 223456666653 1 2223 566666633333334344443
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=96.40 E-value=0.003 Score=57.69 Aligned_cols=82 Identities=15% Similarity=0.079 Sum_probs=57.1
Q ss_pred hhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhh-cCcCCEEE
Q 014834 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVL 183 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea-~~~ADIVi 183 (417)
.+.|+| ++|+|-|+|++|..+|+.|.+. |..|++.+.+...........|... .+.++. -.+|||++
T Consensus 34 ~~~l~g-~~v~IqG~GnVG~~~a~~L~~~------Gakvv~~d~~~~~~~~~~~~~g~~~-----~~~~~~~~~~cDIl~ 101 (230)
T d1leha1 34 SDSLEG-LAVSVQGLGNVAKALCKKLNTE------GAKLVVTDVNKAAVSAAVAEEGADA-----VAPNAIYGVTCDIFA 101 (230)
T ss_dssp SCCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHHHHHHHHHHHCCEE-----CCGGGTTTCCCSEEE
T ss_pred CCCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEeecccHHHHHHHHHhcCCcc-----cCCcccccccccEec
Confidence 466899 9999999999999999999999 9988766655333334444566663 344444 45799999
Q ss_pred EccCCchH-HHHHHHH
Q 014834 184 LLISDAAQ-ADNYEKI 198 (417)
Q Consensus 184 Lavpd~~~-~~Vl~eI 198 (417)
-|--...+ .+..++|
T Consensus 102 PcA~~~~I~~~~~~~l 117 (230)
T d1leha1 102 PCALGAVLNDFTIPQL 117 (230)
T ss_dssp ECSCSCCBSTTHHHHC
T ss_pred ccccccccChHHhhcc
Confidence 88554443 3444433
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.38 E-value=0.0018 Score=56.38 Aligned_cols=71 Identities=21% Similarity=0.302 Sum_probs=50.5
Q ss_pred CCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCC---HHhhcCcCCEEEEc
Q 014834 110 GINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLL 185 (417)
Q Consensus 110 gmkkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s---~~Ea~~~ADIViLa 185 (417)
+||||.|+| .|.+|.++++.|.+. |++|++..|+.++... ....++....+...+ +.++++++|+||.+
T Consensus 2 ~~kkIlV~GatG~iG~~v~~~Ll~~------g~~V~~~~R~~~~~~~-~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~ 74 (205)
T d1hdoa_ 2 AVKKIAIFGATGQTGLTTLAQAVQA------GYEVTVLVRDSSRLPS-EGPRPAHVVVGDVLQAADVDKTVAGQDAVIVL 74 (205)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCGGGSCS-SSCCCSEEEESCTTSHHHHHHHHTTCSEEEEC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC------cCEEEEEEcChhhccc-ccccccccccccccchhhHHHHhcCCCEEEEE
Confidence 369999999 699999999999999 9999888886543211 112333322222333 45789999999998
Q ss_pred cC
Q 014834 186 IS 187 (417)
Q Consensus 186 vp 187 (417)
+.
T Consensus 75 ~g 76 (205)
T d1hdoa_ 75 LG 76 (205)
T ss_dssp CC
T ss_pred ec
Confidence 75
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=96.31 E-value=0.0041 Score=51.58 Aligned_cols=98 Identities=13% Similarity=0.155 Sum_probs=64.6
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~ 190 (417)
+||+|+|+ |.||+++++.+.+. |++++.+.+.+ ..+.+.++|+||=-+.|..
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~------~~~l~~~id~~---------------------~~~~~~~~DVvIDFS~p~~ 53 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEK------GHELVLKVDVN---------------------GVEELDSPDVVIDFSSPEA 53 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEEETT---------------------EEEECSCCSEEEECSCGGG
T ss_pred CEEEEECCCCHHHHHHHHHHhcC------CCeEEEEECCC---------------------cHHHhccCCEEEEecCHHH
Confidence 58999997 99999999988888 88876554321 1233567999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCC
Q 014834 191 QADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGM 240 (417)
Q Consensus 191 ~~~Vl~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntp 240 (417)
..+.++....+=+| +|+=+.|++-.+++. .....+.++ |..+||+|
T Consensus 54 ~~~~l~~~~~~~~p--~ViGTTG~~~~~~~~-i~~~ak~~p-v~~a~N~s 99 (128)
T d1vm6a3 54 LPKTVDLCKKYRAG--LVLGTTALKEEHLQM-LRELSKEVP-VVQAYSRT 99 (128)
T ss_dssp HHHHHHHHHHHTCE--EEECCCSCCHHHHHH-HHHHTTTSE-EEECSCTH
T ss_pred HHHHHHHHHhcCCC--EEEEcCCCCHHHHHH-HHHHHhhCC-EEeeeccC
Confidence 88888765443222 555566886443322 112223443 44567776
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.15 E-value=0.012 Score=50.57 Aligned_cols=75 Identities=17% Similarity=0.048 Sum_probs=41.3
Q ss_pred CEEEEEcccchHH--HHHHHHHhhhhhhcCC-cEEEEEecCChhhH----HH-----HHHcCceecCCCcCCHHhhcCcC
Q 014834 112 NQIGVIGWGSQGP--AQAQNLRDSLAEAKSD-IVVKVGLRKGSRSF----AE-----ARAAGFTEENGTLGDIYETISGS 179 (417)
Q Consensus 112 kkIgIIG~G~mG~--AiA~~Lr~s~~~~~~G-~~ViVg~r~~s~s~----~~-----A~~~G~~~~~~~~~s~~Ea~~~A 179 (417)
+||+|||.|+.|. +++.-+... ++ .. -++...+....+.. +. ..+.+....-....+..+++++|
T Consensus 2 ~KI~iIGaGs~~~~~~~~~l~~~~-~~--~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~ga 78 (169)
T d1s6ya1 2 LKIATIGGGSSYTPELVEGLIKRY-HE--LPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGA 78 (169)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTT-TT--CCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTC
T ss_pred cEEEEECCChhhHHHHHHHHHHhc-cc--cCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCC
Confidence 5899999999874 444444443 10 11 25555554332211 11 11223321111245778899999
Q ss_pred CEEEEccCCc
Q 014834 180 DLVLLLISDA 189 (417)
Q Consensus 180 DIViLavpd~ 189 (417)
|+|+++....
T Consensus 79 DvVv~ta~~~ 88 (169)
T d1s6ya1 79 DFVTTQFRVG 88 (169)
T ss_dssp SEEEECCCTT
T ss_pred CEEEEccccC
Confidence 9999998643
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=96.09 E-value=0.0097 Score=51.59 Aligned_cols=93 Identities=14% Similarity=0.180 Sum_probs=56.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC-hhhHHHHHHcCceecCCC--------------cCCHHhh
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGT--------------LGDIYET 175 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~-s~s~~~A~~~G~~~~~~~--------------~~s~~Ea 175 (417)
|+||||-|+|.+|+.+.+.|.+. .+++++.-++.. ......+...++...... ..+..++
T Consensus 1 M~~VgINGfGRIGR~v~R~l~~~-----~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~ 75 (171)
T d1cf2o1 1 MKAVAINGYGTVGKRVADAIAQQ-----DDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDM 75 (171)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTS-----SSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHH
T ss_pred CeEEEEEcCcHHHHHHHHHHHhC-----CCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHh
Confidence 78999999999999999988776 035655444432 222344445443321000 1234566
Q ss_pred cCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 176 ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 176 ~~~ADIViLavpd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
.+++|+|+=|++-....+-.+ +|++.|.-+++.
T Consensus 76 ~~~vDvViEcTG~f~~~~~~~---~hl~~G~K~vi~ 108 (171)
T d1cf2o1 76 LDEADIVIDCTPEGIGAKNLK---MYKEKGIKAIFQ 108 (171)
T ss_dssp HHTCSEEEECCSTTHHHHHHH---HHHHTTCEEEEC
T ss_pred hcCCCEEEEccCCCCCHHHHH---HHHHcCCCEEEE
Confidence 678999999999876554443 344455544444
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=96.08 E-value=0.018 Score=44.82 Aligned_cols=66 Identities=20% Similarity=0.068 Sum_probs=51.4
Q ss_pred CEEEEEcccchHH-HHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 112 kkIgIIG~G~mG~-AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
+||=|||.|-+|. ++|+-|++. |++|...++..++..+..++.|+... .....+-++++|+||...
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~------G~~VsGSD~~~~~~t~~L~~~Gi~i~---~gh~~~~i~~~d~vV~Ss 68 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSN------GNDVYGSNIEETERTAYLRKLGIPIF---VPHSADNWYDPDLVIKTP 68 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT------TCEEEEECSSCCHHHHHHHHTTCCEE---SSCCTTSCCCCSEEEECT
T ss_pred cEEEEEeECHHHHHHHHHHHHhC------CCeEEEEeCCCChhHHHHHHCCCeEE---eeecccccCCCCEEEEec
Confidence 6899999999997 789999999 99998777776666677888998652 223344568899998753
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.04 E-value=0.0066 Score=51.30 Aligned_cols=68 Identities=21% Similarity=0.182 Sum_probs=41.8
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc--EEEEEecCCh--hhHHHHHH----cCceecCCC----cCCHHhhcCc
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGS--RSFAEARA----AGFTEENGT----LGDIYETISG 178 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s--~s~~~A~~----~G~~~~~~~----~~s~~Ea~~~ 178 (417)
+||+|||. |++|.++|..|..+ ++ ++.+.++... +....+.+ ......+.. ..+..+.+++
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~------~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~ 74 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKE------PFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDE 74 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTC------TTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTT
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhcc
Confidence 58999995 99999999999988 75 7766665422 11111211 111100000 1223467899
Q ss_pred CCEEEEc
Q 014834 179 SDLVLLL 185 (417)
Q Consensus 179 ADIViLa 185 (417)
||+|+++
T Consensus 75 aDvVVit 81 (145)
T d1hyea1 75 SDVVIIT 81 (145)
T ss_dssp CSEEEEC
T ss_pred ceEEEEe
Confidence 9999998
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=96.01 E-value=0.011 Score=47.92 Aligned_cols=92 Identities=13% Similarity=0.188 Sum_probs=57.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHh----hcCcCCEEEEccC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE----TISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~E----a~~~ADIViLavp 187 (417)
|.|-|+|||..|..+++.|+.. + |.+-... +...+.....|+....|...+.+- -+.+|+.++++++
T Consensus 1 kHivI~G~g~~g~~l~~~L~~~------~--i~vi~~d-~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~ 71 (129)
T d2fy8a1 1 RHVVICGWSESTLECLRELRGS------E--VFVLAED-ENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLE 71 (129)
T ss_dssp CCEEEESCCHHHHHHHHTSCGG------G--EEEEESC-TTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCS
T ss_pred CEEEEECCCHHHHHHHHHHcCC------C--CEEEEcc-hHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEecc
Confidence 4688999999999999999765 4 4444443 344566677786553333334332 3788999999999
Q ss_pred CchHHHHHHHHHhcCCCC-cEEEEec
Q 014834 188 DAAQADNYEKIFSCMKPN-SILGLSH 212 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~g-aiLi~a~ 212 (417)
+....-.+-.....+.|. .+++-+.
T Consensus 72 ~d~~n~~~~~~~r~~~~~~~iia~~~ 97 (129)
T d2fy8a1 72 SDSETIHCILGIRKIDESVRIIAEAE 97 (129)
T ss_dssp SHHHHHHHHHHHHHHCSSSCEEEECS
T ss_pred chhhhHHHHHHHHHHCCCceEEEEEc
Confidence 877654333322233443 3555443
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.00 E-value=0.0047 Score=53.15 Aligned_cols=93 Identities=19% Similarity=0.187 Sum_probs=60.2
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcCceec-CCCcCCHHhhc------CcC
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGS 179 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G~~~~-~~~~~s~~Ea~------~~A 179 (417)
-+| .+|.|+|+|-+|...++-++.. |. +|++.+ .+++..+.+++.|.... +-.-.+..+.+ ...
T Consensus 26 ~~g-~~VlI~GaG~vGl~~~q~ak~~------Ga~~Vi~~d-~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~ 97 (174)
T d1jqba2 26 EMG-SSVVVIGIGAVGLMGIAGAKLR------GAGRIIGVG-SRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGV 97 (174)
T ss_dssp CTT-CCEEEECCSHHHHHHHHHHHTT------TCSCEEEEC-CCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCE
T ss_pred CCC-CEEEEEcCCcchhhhhhhhhcc------ccccccccc-chhhhHHHHHhhCccccccccchhHHHHHHHHhhccCc
Confidence 356 8999999999999999999988 87 565544 44556788999995320 11112222222 238
Q ss_pred CEEEEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 180 DIViLavpd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
|+||-++.... .+++....++|+-.+++.
T Consensus 98 D~vid~~g~~~---~~~~a~~~~~~~G~iv~~ 126 (174)
T d1jqba2 98 DRVIMAGGGSE---TLSQAVKMVKPGGIISNI 126 (174)
T ss_dssp EEEEECSSCTT---HHHHHHHHEEEEEEEEEC
T ss_pred ceEEEccCCHH---HHHHHHHHHhcCCEEEEE
Confidence 99999998543 233334455666666544
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=95.97 E-value=0.0071 Score=51.71 Aligned_cols=93 Identities=18% Similarity=0.176 Sum_probs=59.5
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcCceec-CCCcCCHHhh---c------
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYET---I------ 176 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G~~~~-~~~~~s~~Ea---~------ 176 (417)
-+| .+|.|+|+|.+|...++-++.. |. +|++..++ +...+.+++.|.... +-.-.+..+. +
T Consensus 27 ~~G-~~VlV~GaG~iG~~~~~~ak~~------Ga~~Vi~~~~~-~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~ 98 (182)
T d1vj0a2 27 FAG-KTVVIQGAGPLGLFGVVIARSL------GAENVIVIAGS-PNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHG 98 (182)
T ss_dssp CBT-CEEEEECCSHHHHHHHHHHHHT------TBSEEEEEESC-HHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTT
T ss_pred CCC-CEEEEECCCccchhheeccccc------ccccccccccc-cccccccccccceEEEeccccchHHHHHHHHHhhCC
Confidence 457 9999999999999999999988 87 67666554 455788999886320 1111222222 1
Q ss_pred CcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 177 ~~ADIViLavpd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
...|+||-++.... .++.....+++|-.+++.
T Consensus 99 ~g~Dvvid~vG~~~---~~~~a~~~l~~~G~iv~~ 130 (182)
T d1vj0a2 99 RGADFILEATGDSR---ALLEGSELLRRGGFYSVA 130 (182)
T ss_dssp SCEEEEEECSSCTT---HHHHHHHHEEEEEEEEEC
T ss_pred CCceEEeecCCchh---HHHHHHHHhcCCCEEEEE
Confidence 13799998887533 233334455666655533
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=95.95 E-value=0.0065 Score=52.82 Aligned_cols=76 Identities=16% Similarity=0.104 Sum_probs=57.9
Q ss_pred hhccCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~-mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| |+|.|||-+. .|.+++.-|.+. |..|++.... ..+..+.+++||+||.
T Consensus 33 i~l~G-K~v~VIGrS~~VG~Pla~lL~~~------gatVt~~h~~-------------------t~~l~~~~~~ADivI~ 86 (166)
T d1b0aa1 33 IDTFG-LNAVVIGASNIVGRPMSMELLLA------GCTTTVTHRF-------------------TKNLRHHVENADLLIV 86 (166)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHTT------TCEEEEECSS-------------------CSCHHHHHHHCSEEEE
T ss_pred ccccc-ceEEEEeccccccHHHHHHHHHh------hccccccccc-------------------cchhHHHHhhhhHhhh
Confidence 45889 9999999985 999999999988 8888766432 1356677899999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
++.-... ++ ..++|+|++|++++
T Consensus 87 a~G~p~~---i~--~~~vk~g~vvIDvG 109 (166)
T d1b0aa1 87 AVGKPGF---IP--GDWIKEGAIVIDVG 109 (166)
T ss_dssp CSCCTTC---BC--TTTSCTTCEEEECC
T ss_pred hccCccc---cc--ccccCCCcEEEecC
Confidence 9874322 11 34689999888764
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=95.88 E-value=0.014 Score=50.21 Aligned_cols=77 Identities=19% Similarity=0.113 Sum_probs=42.6
Q ss_pred CEEEEEcccchHHHHH--HHHHhhhhhhcCCcEEEEEecCChhhHHH-------HHHcCceecCCCcCCHHhhcCcCCEE
Q 014834 112 NQIGVIGWGSQGPAQA--QNLRDSLAEAKSDIVVKVGLRKGSRSFAE-------ARAAGFTEENGTLGDIYETISGSDLV 182 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA--~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~-------A~~~G~~~~~~~~~s~~Ea~~~ADIV 182 (417)
+||+|||.|+.|.+.+ ..|... +...+.+++..+....+.... ....+....-....+.+|++++||+|
T Consensus 3 mKI~iIGaGsvg~t~~~~~~l~~~--~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~V 80 (171)
T d1obba1 3 VKIGIIGAGSAVFSLRLVSDLCKT--PGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFV 80 (171)
T ss_dssp CEEEEETTTCHHHHHHHHHHHHTC--GGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred cEEEEECCCHHHhHHHHHHHHHhc--cccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeE
Confidence 7999999999997643 233322 000123666555543322111 11122211001135889999999999
Q ss_pred EEccCCch
Q 014834 183 LLLISDAA 190 (417)
Q Consensus 183 iLavpd~~ 190 (417)
++++-...
T Consensus 81 v~~~~~g~ 88 (171)
T d1obba1 81 INTAMVGG 88 (171)
T ss_dssp EECCCTTH
T ss_pred eeeccccc
Confidence 99865443
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=95.87 E-value=0.0023 Score=55.20 Aligned_cols=116 Identities=14% Similarity=0.108 Sum_probs=69.6
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecC-ChhhH--HH-----HHHcCceecCCCcCCHHhhcCcCCEE
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSF--AE-----ARAAGFTEENGTLGDIYETISGSDLV 182 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~-~s~s~--~~-----A~~~G~~~~~~~~~s~~Ea~~~ADIV 182 (417)
.||+|+|+ |.||+++++.+... .++++..+..+ .+... .. ....+... ..+.+++.+.+|+|
T Consensus 5 ikI~i~Ga~GrMG~~i~~~i~~~-----~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~----~~~~~~~~~~~DVi 75 (162)
T d1diha1 5 IRVAIAGAGGRMGRQLIQAALAL-----EGVQLGAALEREGSSLLGSDAGELAGAGKTGVTV----QSSLDAVKDDFDVF 75 (162)
T ss_dssp EEEEETTTTSHHHHHHHHHHHHS-----TTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCE----ESCSTTTTTSCSEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecccchhccchhhhhhccccCCcee----eccHHHHhcccceE
Confidence 58999996 99999999988765 15666544433 21110 00 00122222 35677888999999
Q ss_pred EEccCCchHHHHHHHHHhcCCCCc-EEEEecCchhhhhhhcccCCCCCccEEEeccCCCc
Q 014834 183 LLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMG 241 (417)
Q Consensus 183 iLavpd~~~~~Vl~eI~~~lk~ga-iLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg 241 (417)
|=-+.|....+.++....+ +. +|+=+.|++-..++. .....+++++ ...||++-
T Consensus 76 IDFs~p~~~~~~~~~a~~~---~~~~ViGTTG~~~~~~~~-i~~~a~~ipi-~~apN~Sl 130 (162)
T d1diha1 76 IDFTRPEGTLNHLAFCRQH---GKGMVIGTTGFDEAGKQA-IRDAAADIAI-VFAANFSM 130 (162)
T ss_dssp EECSCHHHHHHHHHHHHHT---TCEEEECCCCCCHHHHHH-HHHHTTTSCE-EECSCCCH
T ss_pred EEeccHHHHHHHHHHHHhc---cceeEEecCCCcHHHHHH-HHHHcCCCCE-EEEccccH
Confidence 9999998888777654433 33 455567886432221 1122344554 56788764
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=95.74 E-value=0.017 Score=50.06 Aligned_cols=80 Identities=16% Similarity=0.206 Sum_probs=51.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC-ChhhHHHHHHcCceecC--------------CCcCCHHhhc
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTEEN--------------GTLGDIYETI 176 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~-~s~s~~~A~~~G~~~~~--------------~~~~s~~Ea~ 176 (417)
.||||.|+|.||+.+.+.|.+. ..++++.-++. +......+.+.++.... ....+..++.
T Consensus 3 irIaINGfGRIGR~v~Ral~~~-----~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (172)
T d2czca2 3 VKVGVNGYGTIGKRVAYAVTKQ-----DDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLL 77 (172)
T ss_dssp EEEEEECCSHHHHHHHHHHHTC-----TTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHhC-----CCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhh
Confidence 5899999999999999999865 14566544443 22223445555432100 0023456677
Q ss_pred CcCCEEEEccCCchHHHHHH
Q 014834 177 SGSDLVLLLISDAAQADNYE 196 (417)
Q Consensus 177 ~~ADIViLavpd~~~~~Vl~ 196 (417)
+++|+|+=|++.....+-.+
T Consensus 78 ~~vDvViEcTG~f~~~~~~~ 97 (172)
T d2czca2 78 EKVDIIVDATPGGIGAKNKP 97 (172)
T ss_dssp TTCSEEEECCSTTHHHHHHH
T ss_pred ccCCEEEECCCCCCCHHHHH
Confidence 89999999999877665554
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.72 E-value=0.013 Score=50.90 Aligned_cols=77 Identities=17% Similarity=0.208 Sum_probs=58.9
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
..++| |+|.|||-+ ..|.+++.-|.+. |..|.+.... ..+..+.+++||+|+.
T Consensus 35 i~l~G-k~vvVIGrS~iVGrPLa~lL~~~------gatVt~~~~~-------------------t~~l~~~~~~aDivi~ 88 (170)
T d1a4ia1 35 VPIAG-RHAVVVGRSKIVGAPMHDLLLWN------NATVTTCHSK-------------------TAHLDEEVNKGDILVV 88 (170)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTT-------------------CSSHHHHHTTCSEEEE
T ss_pred ccccc-ceEEEEecCCccchHHHHHHHhc------cCceEEEecc-------------------cccHHHHHhhccchhh
Confidence 45899 999999998 4999999999998 9888766432 2345667889999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
++.-... ++ ..++++|.+|+++ |+
T Consensus 89 a~G~~~~---i~--~~~vk~g~iviDv-gi 112 (170)
T d1a4ia1 89 ATGQPEM---VK--GEWIKPGAIVIDC-GI 112 (170)
T ss_dssp CCCCTTC---BC--GGGSCTTCEEEEC-CC
T ss_pred ccccccc---cc--cccccCCCeEecc-Cc
Confidence 9885332 21 3468999988877 44
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.68 E-value=0.02 Score=47.58 Aligned_cols=92 Identities=14% Similarity=0.177 Sum_probs=62.4
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec-CCCcCCH----HhhcCcCCEEE
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDI----YETISGSDLVL 183 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~-~~~~~s~----~Ea~~~ADIVi 183 (417)
+| .+|.|+|.|.+|...++.++.. |.+|++..++ +...+.+++.|+... +....+. .+...+.|.++
T Consensus 27 ~g-~~vlv~G~G~iG~~a~~~a~~~------g~~v~~~~~~-~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v 98 (168)
T d1rjwa2 27 PG-EWVAIYGIGGLGHVAVQYAKAM------GLNVVAVDIG-DEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAV 98 (168)
T ss_dssp TT-CEEEEECCSTTHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEE
T ss_pred CC-CEEEEeecccchhhhhHHHhcC------CCeEeccCCC-HHHhhhhhhcCcceecccccchhhhhcccccCCCceEE
Confidence 56 8999999999999999999988 8888766554 455788899987531 1111122 23345567777
Q ss_pred EccCCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 184 Lavpd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
..+.. .+.++.....++++..+++.
T Consensus 99 ~~~~~---~~~~~~a~~~l~~~G~i~~~ 123 (168)
T d1rjwa2 99 VTAVS---KPAFQSAYNSIRRGGACVLV 123 (168)
T ss_dssp ESSCC---HHHHHHHHHHEEEEEEEEEC
T ss_pred eecCC---HHHHHHHHHHhccCCceEec
Confidence 77654 34455666677777776654
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.65 E-value=0.02 Score=48.23 Aligned_cols=67 Identities=7% Similarity=-0.027 Sum_probs=40.6
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc-------EEEEEecCChhhHHHHHH------cCcee---cCCCcCCHHh
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGSRSFAEARA------AGFTE---ENGTLGDIYE 174 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~-------~ViVg~r~~s~s~~~A~~------~G~~~---~~~~~~s~~E 174 (417)
.||+|||. |++|.+++..|... ++ ++...+.. +...+++. ..... ......+..+
T Consensus 4 ~KV~IiGA~G~VG~~la~~l~~~------~~~~~~~~~~L~l~d~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 75 (154)
T d5mdha1 4 IRVLVTGAAGQIAYSLLYSIGNG------SVFGKDQPIILVLLDIT--PMMGVLDGVLMELQDCALPLLKDVIATDKEEI 75 (154)
T ss_dssp EEEEESSTTSHHHHTTHHHHHTT------TTTCTTCCEEEEEECCG--GGHHHHHHHHHHHHHTCCTTEEEEEEESCHHH
T ss_pred eEEEEECCCCHHHHHHHHHHHHH------HhcCCCCccEEEEecCc--cchhhhhhhhhhhcccccccccccccCccccc
Confidence 59999995 99999999998764 32 33333332 22222221 11100 0001346788
Q ss_pred hcCcCCEEEEcc
Q 014834 175 TISGSDLVLLLI 186 (417)
Q Consensus 175 a~~~ADIViLav 186 (417)
+++++|+|+++-
T Consensus 76 ~~~~~dvVVita 87 (154)
T d5mdha1 76 AFKDLDVAILVG 87 (154)
T ss_dssp HTTTCSEEEECC
T ss_pred ccCCceEEEEec
Confidence 999999999985
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=95.60 E-value=0.046 Score=46.73 Aligned_cols=87 Identities=20% Similarity=0.216 Sum_probs=57.2
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcCceec-CCCc-C-CHHhhc-----Cc
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTL-G-DIYETI-----SG 178 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G~~~~-~~~~-~-s~~Ea~-----~~ 178 (417)
-.| .+|.|+|+|-+|...++.++.. |. .|++.+. ++...+.|++.|.... +... . ..++.. ..
T Consensus 27 ~~G-~~VlV~G~G~iGl~a~~~ak~~------Ga~~Vi~~d~-~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G 98 (174)
T d1e3ia2 27 TPG-STCAVFGLGCVGLSAIIGCKIA------GASRIIAIDI-NGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGG 98 (174)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECS-CGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSC
T ss_pred CCC-CEEEEECCChHHHHHHHHHHHh------CCceeeeecc-chHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCC
Confidence 356 8999999999999999999998 87 4554444 4556899999997531 0000 1 112111 45
Q ss_pred CCEEEEccCCchHHHHHHHHHhcCCCC
Q 014834 179 SDLVLLLISDAAQADNYEKIFSCMKPN 205 (417)
Q Consensus 179 ADIViLavpd~~~~~Vl~eI~~~lk~g 205 (417)
.|++|-++.... .+++-...++++
T Consensus 99 ~d~vie~~G~~~---~~~~a~~~~~~g 122 (174)
T d1e3ia2 99 VDYSLDCAGTAQ---TLKAAVDCTVLG 122 (174)
T ss_dssp BSEEEESSCCHH---HHHHHHHTBCTT
T ss_pred CcEEEEecccch---HHHHHHHHhhcC
Confidence 799999987643 344444556664
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.59 E-value=0.04 Score=46.05 Aligned_cols=93 Identities=20% Similarity=0.214 Sum_probs=60.8
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec-C--CCcCCHHhhc-----CcC
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-N--GTLGDIYETI-----SGS 179 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~-~--~~~~s~~Ea~-----~~A 179 (417)
-+| .+|.|+|.|-+|...++-++.. |..+++..+.++...+.+++.|.... + +...+..+.+ ...
T Consensus 27 ~~G-~tVlI~GaGGvG~~aiq~ak~~------G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~ 99 (176)
T d2fzwa2 27 EPG-SVCAVFGLGGVGLAVIMGCKVA------GASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGV 99 (176)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred CCC-CEEEEecchhHHHHHHHHHHHH------hcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCC
Confidence 356 8999999999999999999988 87555555555666889999996431 0 0011222222 358
Q ss_pred CEEEEccCCchHHHHHHHHHhcCCCCcEEEE
Q 014834 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGL 210 (417)
Q Consensus 180 DIViLavpd~~~~~Vl~eI~~~lk~gaiLi~ 210 (417)
|+||-++..... ++.....+++|..++.
T Consensus 100 D~vid~~G~~~~---~~~~~~~~~~g~~~~~ 127 (176)
T d2fzwa2 100 DYSFECIGNVKV---MRAALEACHKGWGVSV 127 (176)
T ss_dssp SEEEECSCCHHH---HHHHHHTBCTTTCEEE
T ss_pred cEeeecCCCHHH---HHHHHHhhcCCceeEE
Confidence 999999876543 3334445666654443
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=95.59 E-value=0.03 Score=48.15 Aligned_cols=76 Identities=22% Similarity=0.051 Sum_probs=41.4
Q ss_pred CEEEEEcccchHHHHH-HHHHhhhhhhcCCcEEEEEecCChhhHHHHH-------HcCceecCCCcCCHHhhcCcCCEEE
Q 014834 112 NQIGVIGWGSQGPAQA-QNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-------AAGFTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA-~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~-------~~G~~~~~~~~~s~~Ea~~~ADIVi 183 (417)
.||+|||.|+.|.+.+ ..+.....+. .+-+++..+...++....+. ..+....-....+.+|++++||+|+
T Consensus 4 ~KI~iIGaGsv~~~~~~~~ll~~~~~l-~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~Vv 82 (167)
T d1u8xx1 4 FSIVIAGGGSTFTPGIVLMLLDHLEEF-PIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVM 82 (167)
T ss_dssp EEEEEECTTSSSHHHHHHHHHHTTTTS-CEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEE
T ss_pred ceEEEECCChhhhHHHHHHHHhhhhhc-CCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEEE
Confidence 6899999999987633 3333321111 01256555544333221111 1122110012457889999999999
Q ss_pred EccCC
Q 014834 184 LLISD 188 (417)
Q Consensus 184 Lavpd 188 (417)
++.-.
T Consensus 83 itag~ 87 (167)
T d1u8xx1 83 AHIRV 87 (167)
T ss_dssp ECCCT
T ss_pred ECCCc
Confidence 99754
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=95.56 E-value=0.015 Score=48.96 Aligned_cols=68 Identities=24% Similarity=0.341 Sum_probs=40.6
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCc--EEEEEecCC--hhhHHHHHHc----CceecC-CCcCCHHhhcCcCCE
Q 014834 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKG--SRSFAEARAA----GFTEEN-GTLGDIYETISGSDL 181 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~--s~s~~~A~~~----G~~~~~-~~~~s~~Ea~~~ADI 181 (417)
.||+||| .|.+|.++|..|..+ ++ ++.+.+... ...+-.+.+. .+.... -...+. +.+++||+
T Consensus 1 sKV~IiGaaG~VG~~~A~~l~~~------~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~-~~~~~aDi 73 (142)
T d1o6za1 1 TKVSVVGAAGTVGAAAGYNIALR------DIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGY-EDTAGSDV 73 (142)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT------TCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCG-GGGTTCSE
T ss_pred CeEEEECCCCcHHHHHHHHHHhC------CCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCH-HHhhhcCE
Confidence 3899999 699999999999988 76 565555322 1222222221 111000 012344 45689999
Q ss_pred EEEcc
Q 014834 182 VLLLI 186 (417)
Q Consensus 182 ViLav 186 (417)
|+++.
T Consensus 74 Vvita 78 (142)
T d1o6za1 74 VVITA 78 (142)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 99973
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.49 E-value=0.0063 Score=51.50 Aligned_cols=94 Identities=18% Similarity=0.199 Sum_probs=60.9
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec-CC-CcCC-HHhhcCcCCEEEEc
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NG-TLGD-IYETISGSDLVLLL 185 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~-~~-~~~s-~~Ea~~~ADIViLa 185 (417)
.| .+|.|+|.|.+|...++.++.. |.+|++..+++ ...+.+++.|.... +. ...+ .+......|+|+.+
T Consensus 27 ~g-~~vlI~GaG~vG~~a~q~ak~~------G~~vi~~~~~~-~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~ 98 (168)
T d1piwa2 27 PG-KKVGIVGLGGIGSMGTLISKAM------GAETYVISRSS-RKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVC 98 (168)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHH------TCEEEEEESSS-TTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEEC
T ss_pred CC-CEEEEECCCCcchhHHHHhhhc------cccccccccch-hHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEE
Confidence 56 9999999999999999998888 99988776654 45788999886320 00 0111 22344567999888
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 186 vpd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
+...... .++.....++++-.+++.
T Consensus 99 ~~~~~~~-~~~~~~~~l~~~G~iv~~ 123 (168)
T d1piwa2 99 ASSLTDI-DFNIMPKAMKVGGRIVSI 123 (168)
T ss_dssp CSCSTTC-CTTTGGGGEEEEEEEEEC
T ss_pred ecCCccc-hHHHHHHHhhccceEEEe
Confidence 6643211 133345566666555533
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=95.45 E-value=0.025 Score=47.52 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=20.2
Q ss_pred CEEEEEcc-cchHHHHHHHHHhh
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDS 133 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s 133 (417)
+||+|||. |.+|.+++..|...
T Consensus 5 ~KV~IiGA~G~VG~~~a~~l~~~ 27 (154)
T d1y7ta1 5 VRVAVTGAAGQIGYSLLFRIAAG 27 (154)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhc
Confidence 49999997 99999999999876
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=95.36 E-value=0.018 Score=49.05 Aligned_cols=76 Identities=13% Similarity=-0.011 Sum_probs=43.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH-------cCceecCCCcCCHHhhcCcCCEEEE
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~-------~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
+||+|||.|+.|.+++....-........-++.+.+...++ .+.+.+ ..... ....+.++++++||+|++
T Consensus 1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k-~~~~~d~~~~~~~~~~~~--~~t~~~~~~l~~aDvVVi 77 (162)
T d1up7a1 1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEK-QKIVVDFVKRLVKDRFKV--LISDTFEGAVVDAKYVIF 77 (162)
T ss_dssp CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHH-HHHHHHHHHHHHTTSSEE--EECSSHHHHHTTCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHH-HHHHHHHHHhhhccCceE--EEecCcccccCCCCEEEE
Confidence 58999999999988875432210010002256655554332 222221 12211 113567889999999999
Q ss_pred ccCCch
Q 014834 185 LISDAA 190 (417)
Q Consensus 185 avpd~~ 190 (417)
..-...
T Consensus 78 ta~~~~ 83 (162)
T d1up7a1 78 QFRPGG 83 (162)
T ss_dssp CCCTTH
T ss_pred ecccCC
Confidence 876443
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=95.36 E-value=0.014 Score=49.40 Aligned_cols=92 Identities=13% Similarity=0.168 Sum_probs=57.7
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec-CCCcCCHHhhc-----CcCCEE
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI-----SGSDLV 182 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~-~~~~~s~~Ea~-----~~ADIV 182 (417)
.| .+|.|+|.|.+|...++-++.. |..+++..+.++...+.+++.|.... +..-.+.++.. ...|+|
T Consensus 32 ~g-~~vli~GaG~vG~~~~~~a~~~------g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~v 104 (172)
T d1h2ba2 32 PG-AYVAIVGVGGLGHIAVQLLKVM------TPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVA 104 (172)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHH------CCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEE
T ss_pred CC-CEEEEeCCChHHHHHHHHHHhh------cCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEE
Confidence 46 8999999999999999999888 76444454444556788888885421 11101122222 236888
Q ss_pred EEccCCchHHHHHHHHHhcCCCCcEEEE
Q 014834 183 LLLISDAAQADNYEKIFSCMKPNSILGL 210 (417)
Q Consensus 183 iLavpd~~~~~Vl~eI~~~lk~gaiLi~ 210 (417)
|-++.... .++.....++++-.+++
T Consensus 105 id~~g~~~---~~~~a~~~l~~~G~iv~ 129 (172)
T d1h2ba2 105 MDFVGSQA---TVDYTPYLLGRMGRLII 129 (172)
T ss_dssp EESSCCHH---HHHHGGGGEEEEEEEEE
T ss_pred EEecCcch---HHHHHHHHHhCCCEEEE
Confidence 88877643 34444556666665553
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=95.27 E-value=0.028 Score=48.82 Aligned_cols=37 Identities=24% Similarity=0.192 Sum_probs=33.8
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~ 149 (417)
..-+. |+|+|||.|.-|.+-|..|.+. |++|.++.+.
T Consensus 39 ~~~~~-k~V~IIGaGPAGL~AA~~la~~------G~~Vtl~E~~ 75 (179)
T d1ps9a3 39 PAVQK-KNLAVVGAGPAGLAFAINAAAR------GHQVTLFDAH 75 (179)
T ss_dssp SCSSC-CEEEEECCSHHHHHHHHHHHTT------TCEEEEEESS
T ss_pred CCCCC-cEEEEECccHHHHHHHHHHHhh------ccceEEEecc
Confidence 56677 9999999999999999999999 9999999875
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=95.27 E-value=0.013 Score=50.69 Aligned_cols=75 Identities=20% Similarity=0.173 Sum_probs=53.3
Q ss_pred hhccCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHc----C--ceecCC-CcCCHHhhcC
Q 014834 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----G--FTEENG-TLGDIYETIS 177 (417)
Q Consensus 106 ~~l~gmkkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~----G--~~~~~~-~~~s~~Ea~~ 177 (417)
..|+| |+|-|.| .|-+|.++++.|.+. |.+|++..|+.++..+.+.+. . +...|- ...++++++.
T Consensus 19 ~~l~g-K~vlItGasgGIG~~ia~~la~~------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 91 (191)
T d1luaa1 19 GSVKG-KKAVVLAGTGPVGMRSAALLAGE------GAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVK 91 (191)
T ss_dssp SCCTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTT
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHhh------ccchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhc
Confidence 67899 9999999 689999999999999 999999888765544443332 1 111010 1123566788
Q ss_pred cCCEEEEccC
Q 014834 178 GSDLVLLLIS 187 (417)
Q Consensus 178 ~ADIViLavp 187 (417)
+.|+||.+..
T Consensus 92 ~iDilin~Ag 101 (191)
T d1luaa1 92 GAHFVFTAGA 101 (191)
T ss_dssp TCSEEEECCC
T ss_pred CcCeeeecCc
Confidence 9999988754
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=95.26 E-value=0.057 Score=46.61 Aligned_cols=70 Identities=21% Similarity=0.056 Sum_probs=41.2
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc--EEEEEecCChhh--HHHHHH--cC-------ceecCCCcCCHHhhcC
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRS--FAEARA--AG-------FTEENGTLGDIYETIS 177 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~--~ViVg~r~~s~s--~~~A~~--~G-------~~~~~~~~~s~~Ea~~ 177 (417)
-||.|+|. |++|.+++..|.... =.|... ++.+.+...... ...+.+ +. +.. ..+..++++
T Consensus 25 ~kV~I~GA~G~Ig~~l~~~La~g~-v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~----~~~~~~~~~ 99 (175)
T d7mdha1 25 VNIAVSGAAGMISNHLLFKLASGE-VFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSI----GIDPYEVFE 99 (175)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTT-TTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEE----ESCHHHHTT
T ss_pred cEEEEECCCcHHHHHHHHHHHcCc-ccCCCceEEEEEecCccccchhcchhhhhcccccccccCccc----cccchhhcc
Confidence 58999996 999999999998640 000011 333333322111 112211 11 121 457889999
Q ss_pred cCCEEEEcc
Q 014834 178 GSDLVLLLI 186 (417)
Q Consensus 178 ~ADIViLav 186 (417)
++|+||++-
T Consensus 100 ~aDvVvi~a 108 (175)
T d7mdha1 100 DVDWALLIG 108 (175)
T ss_dssp TCSEEEECC
T ss_pred CCceEEEee
Confidence 999999985
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.24 E-value=0.025 Score=47.20 Aligned_cols=92 Identities=20% Similarity=0.231 Sum_probs=60.2
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec-CCCcCCHHhh----cCcCCEEE
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYET----ISGSDLVL 183 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~-~~~~~s~~Ea----~~~ADIVi 183 (417)
+| .+|.|+|.|.+|...++-++.. |.+|++..++ +...+.+++.|.... +..-.+..+. ....|.++
T Consensus 27 ~g-~~VlV~GaG~vG~~~~~~ak~~------G~~Vi~~~~~-~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i 98 (166)
T d1llua2 27 PG-QWVAISGIGGLGHVAVQYARAM------GLHVAAIDID-DAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVL 98 (166)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESC-HHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEE
T ss_pred CC-CEEEEeeccccHHHHHHHHHHc------CCccceecch-hhHHHhhhccCccccccccchhHHHHHHHhhcCCcccc
Confidence 46 8999999999999999999888 9888776655 455788899886421 1111223222 23356666
Q ss_pred EccCCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 184 Lavpd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
.++... +.++...+.++++-.++..
T Consensus 99 ~~~~~~---~~~~~~~~~l~~~G~iv~~ 123 (166)
T d1llua2 99 VTAVSN---SAFGQAIGMARRGGTIALV 123 (166)
T ss_dssp ECCSCH---HHHHHHHTTEEEEEEEEEC
T ss_pred cccccc---hHHHHHHHHhcCCcEEEEE
Confidence 665543 3455555677776665543
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=94.99 E-value=0.024 Score=47.67 Aligned_cols=71 Identities=23% Similarity=0.171 Sum_probs=40.6
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHc--C--ceecCCC-cCCHHhhcCcCCEEEEc
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--G--FTEENGT-LGDIYETISGSDLVLLL 185 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~--G--~~~~~~~-~~s~~Ea~~~ADIViLa 185 (417)
+||+|||. |++|.++|..|.... +...++.+.+.. +.....+.+. . +...... ..+..+.+++||+|+++
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~---~~~~el~L~D~~-~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvit 76 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQL---PSGSELSLYDIA-PVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLIS 76 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHS---CTTCEEEEECSS-TTHHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEEC
T ss_pred CEEEEEcCCChHHHHHHHHHHhCC---CCCcEEEEeccc-ccchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEEC
Confidence 69999995 999999998875320 112366655543 3333333331 1 0000000 12334578899999998
Q ss_pred c
Q 014834 186 I 186 (417)
Q Consensus 186 v 186 (417)
-
T Consensus 77 a 77 (145)
T d2cmda1 77 A 77 (145)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=94.98 E-value=0.023 Score=47.72 Aligned_cols=90 Identities=18% Similarity=0.248 Sum_probs=60.7
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec-CCCcCC---HHhhcCcCCEEEE
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGD---IYETISGSDLVLL 184 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~-~~~~~s---~~Ea~~~ADIViL 184 (417)
.| .+|.|+|.|.+|...++-++.. |.++++..++.+ ..+.+++.|.... + ..+ .....+..|++|-
T Consensus 30 ~G-~~VlI~GaG~vG~~a~qlak~~------Ga~~i~~~~~~~-~~~~a~~lGad~~i~--~~~~~~~~~~~~~~D~vid 99 (168)
T d1uufa2 30 PG-KKVGVVGIGGLGHMGIKLAHAM------GAHVVAFTTSEA-KREAAKALGADEVVN--SRNADEMAAHLKSFDFILN 99 (168)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESSGG-GHHHHHHHTCSEEEE--TTCHHHHHTTTTCEEEEEE
T ss_pred CC-CEEEEeccchHHHHHHHHhhcc------cccchhhccchh-HHHHHhccCCcEEEE--CchhhHHHHhcCCCceeee
Confidence 46 8999999999999999999988 988877666544 4678888886420 1 111 2234456899999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 185 avpd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
++..... ++.....++++-.++..
T Consensus 100 ~~g~~~~---~~~~~~~l~~~G~iv~~ 123 (168)
T d1uufa2 100 TVAAPHN---LDDFTTLLKRDGTMTLV 123 (168)
T ss_dssp CCSSCCC---HHHHHTTEEEEEEEEEC
T ss_pred eeecchh---HHHHHHHHhcCCEEEEe
Confidence 9875432 23334456666555543
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=94.94 E-value=0.025 Score=50.72 Aligned_cols=86 Identities=14% Similarity=0.031 Sum_probs=55.8
Q ss_pred ccCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 108 FNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 108 l~gmkkIgIIG~G~-mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
|+| |++-|.|.+. +|.++|+.|.+. |.+|++..|+.++..+...+.|... ..-.+|+ .
T Consensus 3 l~g-K~alItGas~GIG~aia~~l~~~------G~~V~~~~r~~~~~~~~~~~~~~~~----------~~~~~Dl----s 61 (241)
T d2a4ka1 3 LSG-KTILVTGAASGIGRAALDLFARE------GASLVAVDREERLLAEAVAALEAEA----------IAVVADV----S 61 (241)
T ss_dssp TTT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHTCCSSE----------EEEECCT----T
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHcCCce----------EEEEecC----C
Confidence 789 9999999875 999999999999 9999988887544433333333210 0011222 3
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
.+..+.++++++...+.+=.+|+..+|.
T Consensus 62 ~~~~i~~~~~~i~~~~g~iDiLinnAg~ 89 (241)
T d2a4ka1 62 DPKAVEAVFAEALEEFGRLHGVAHFAGV 89 (241)
T ss_dssp SHHHHHHHHHHHHHHHSCCCEEEEGGGG
T ss_pred CHHHHHHHHHHHHHHhCCccEecccccc
Confidence 3444556777777666544567766665
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=94.80 E-value=0.1 Score=44.14 Aligned_cols=77 Identities=25% Similarity=0.293 Sum_probs=51.9
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec-CCCcCC--HHhhc-----C
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGD--IYETI-----S 177 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~-~~~~~s--~~Ea~-----~ 177 (417)
+.-+| .+|.|+|+|-+|...++.++.. |...++..+.++...+.+++.|.... |-...+ .+++. .
T Consensus 24 ~~~~G-~~VlV~GaGgvGl~a~~~ak~~------G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~ 96 (174)
T d1p0fa2 24 KVTPG-STCAVFGLGGVGFSAIVGCKAA------GASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNG 96 (174)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTS
T ss_pred CCCCC-CEEEEECCCchhHHHHHHHHHc------CCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCC
Confidence 34567 8999999999999999999998 87434444444566899999997531 000011 22222 2
Q ss_pred cCCEEEEccCCc
Q 014834 178 GSDLVLLLISDA 189 (417)
Q Consensus 178 ~ADIViLavpd~ 189 (417)
..|+||-++...
T Consensus 97 G~d~vid~~g~~ 108 (174)
T d1p0fa2 97 GVDYAVECAGRI 108 (174)
T ss_dssp CBSEEEECSCCH
T ss_pred CCcEEEEcCCCc
Confidence 478888888764
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.69 E-value=0.022 Score=47.17 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=31.9
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEec
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r 148 (417)
-.|+| |+|-|||.|.+|..-++.|.+. |.+|+|...
T Consensus 9 ~~l~g-krvLViGgG~va~~ka~~Ll~~------GA~VtVvap 44 (150)
T d1kyqa1 9 HQLKD-KRILLIGGGEVGLTRLYKLMPT------GCKLTLVSP 44 (150)
T ss_dssp ECCTT-CEEEEEEESHHHHHHHHHHGGG------TCEEEEEEE
T ss_pred eeeCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeC
Confidence 45899 9999999999999999999999 998877643
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=94.49 E-value=0.13 Score=42.95 Aligned_cols=77 Identities=22% Similarity=0.296 Sum_probs=51.5
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcCceec-CC-Cc-CCHHhhc-----C
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NG-TL-GDIYETI-----S 177 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G~~~~-~~-~~-~s~~Ea~-----~ 177 (417)
--+| .+|.|+|.|-+|...++.++.. |. .|++ ...++...+.+++.|.... +. .. ....+.. .
T Consensus 26 vk~G-dtVlV~GaGG~G~~~~~~~~~~------g~~~Vi~-~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~ 97 (176)
T d2jhfa2 26 VTQG-STCAVFGLGGVGLSVIMGCKAA------GAARIIG-VDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNG 97 (176)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEE-ECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTS
T ss_pred CCCC-CEEEEECCCCcHHHHHHHHHHc------CCceEEe-ecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcC
Confidence 3456 8999999999999999999988 76 5554 4444556788999886531 00 00 1122211 2
Q ss_pred cCCEEEEccCCchH
Q 014834 178 GSDLVLLLISDAAQ 191 (417)
Q Consensus 178 ~ADIViLavpd~~~ 191 (417)
..|+||-++.....
T Consensus 98 G~D~vid~~G~~~~ 111 (176)
T d2jhfa2 98 GVDFSFEVIGRLDT 111 (176)
T ss_dssp CBSEEEECSCCHHH
T ss_pred CCCEEEecCCchhH
Confidence 57999999887544
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=94.45 E-value=0.16 Score=42.33 Aligned_cols=78 Identities=19% Similarity=0.264 Sum_probs=50.6
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec-CCC-c-CCHHhhc-----Cc
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGT-L-GDIYETI-----SG 178 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~-~~~-~-~s~~Ea~-----~~ 178 (417)
--+| .+|.|+|.|-+|...++.++.. |-..++..+..+...+.+++.|.... +-. . ...++.. ..
T Consensus 26 ~k~g-~~VlI~G~Gg~g~~~~~~~~~~------g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~~~~~G 98 (175)
T d1cdoa2 26 VEPG-STCAVFGLGAVGLAAVMGCHSA------GAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGG 98 (175)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSC
T ss_pred CCCC-CEEEEEecCCccchHHHHHHHH------hhchheeecchHHHHHHHHHcCCcEEEcCCCcchhHHHHHHhhccCC
Confidence 3456 8999999999999999998887 66433444444556889999996431 000 0 0112222 25
Q ss_pred CCEEEEccCCchH
Q 014834 179 SDLVLLLISDAAQ 191 (417)
Q Consensus 179 ADIViLavpd~~~ 191 (417)
.|+|+-++.....
T Consensus 99 ~d~vid~~G~~~~ 111 (175)
T d1cdoa2 99 VDFSLECVGNVGV 111 (175)
T ss_dssp BSEEEECSCCHHH
T ss_pred cceeeeecCCHHH
Confidence 7899988876443
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=94.38 E-value=0.036 Score=50.22 Aligned_cols=87 Identities=14% Similarity=0.048 Sum_probs=57.0
Q ss_pred hccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
.|+| |++-|.|.+ -||.++|+.|.+. |.+|++.+|+.++..+..++.|-.. ..-.+|+
T Consensus 2 dL~g-K~alVTGas~GIG~aia~~la~~------Ga~V~~~~r~~~~~~~~~~~~~~~~----------~~~~~Dv---- 60 (254)
T d1hdca_ 2 DLSG-KTVIITGGARGLGAEAARQAVAA------GARVVLADVLDEEGAATARELGDAA----------RYQHLDV---- 60 (254)
T ss_dssp CCCC-SEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHTTGGGE----------EEEECCT----
T ss_pred CCCC-CEEEEeCcCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHhCCce----------EEEEccc----
Confidence 5899 999999987 5999999999999 9999888887554444433332110 0112332
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 186 vpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
+.++...++++++...+.+=.+|+..+|+
T Consensus 61 ~~~~~v~~~~~~~~~~~g~iDilVnnAg~ 89 (254)
T d1hdca_ 61 TIEEDWQRVVAYAREEFGSVDGLVNNAGI 89 (254)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CCHHHHHHHHHHHHHHcCCccEEEecCcc
Confidence 33445567777776655333367777776
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=94.35 E-value=0.011 Score=50.28 Aligned_cols=122 Identities=12% Similarity=-0.028 Sum_probs=63.3
Q ss_pred CEEEEEc-ccchHHHHHHHHHhh--hhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCC
Q 014834 112 NQIGVIG-WGSQGPAQAQNLRDS--LAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s--~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd 188 (417)
+|||||| .|..|.-+.+.|.+. ++ ..++.....+.+ ..+....+.....-......+..+++|+||+|+|.
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p----~~~i~~~ss~~~--~gk~~~~~~~~~~~~~~~~~~~~~~~DvvF~alp~ 74 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFD----LIEPVFFSTSQI--GVPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGG 74 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGG----GSEEEEEESSCC--SSBCCCSSSCCCBCEETTCHHHHTTCSEEEECSCH
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCC----ceEEEEeccccc--cccccccCCcceeeecccchhhhccccEEEEecCc
Confidence 5899999 589999999877642 00 124432222111 10011111110000001223557899999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHhhc
Q 014834 189 AAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251 (417)
Q Consensus 189 ~~~~~Vl~eI~~~lk~gaiLi~a~G~~i~~~~~~~i~~~~dv~VI~v~Pntpg~~vr~ly~~G 251 (417)
....++.+++... ..+.+|++.++. | .+.+ ++..+-|-.-...+.....+|
T Consensus 75 ~~s~~~~~~l~~~-g~~~~VIDlSsd---f------R~~~--dvpl~lPEiN~~~I~~a~~~~ 125 (147)
T d1mb4a1 75 SYTEKVYPALRQA-GWKGYWIDAAST---L------RMDK--EAIITLDPVNLKQILHGIHHG 125 (147)
T ss_dssp HHHHHHHHHHHHT-TCCSEEEESSST---T------TTCT--TEEEECHHHHHHHHHHHHHTT
T ss_pred hHHHHHhHHHHHc-CCceEEEeCCcc---c------cccC--CceEEeCCcCHHHHHHHHHcC
Confidence 8888888776543 122357766653 1 2222 566666643333344334443
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.31 E-value=0.045 Score=45.73 Aligned_cols=92 Identities=16% Similarity=0.130 Sum_probs=57.1
Q ss_pred cCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcCcee-cCCCcCCHHhhc------CcC
Q 014834 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTE-ENGTLGDIYETI------SGS 179 (417)
Q Consensus 109 ~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G~~~-~~~~~~s~~Ea~------~~A 179 (417)
.| .+|.|+|. |.+|...++-++.. |. .|++..++ +...+.+++.|... .+....+..+.+ ...
T Consensus 27 ~g-~~vlV~G~~G~vG~~~~~~~~~~------g~~~V~~~~~~-~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~ 98 (170)
T d1jvba2 27 PT-KTLLVVGAGGGLGTMAVQIAKAV------SGATIIGVDVR-EEAVEAAKRAGADYVINASMQDPLAEIRRITESKGV 98 (170)
T ss_dssp TT-CEEEEETTTSHHHHHHHHHHHHH------TCCEEEEEESS-HHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCE
T ss_pred CC-CEEEEEeccccceeeeeeccccc------ccccccccccc-hhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccc
Confidence 45 89999995 99999999988887 85 66555444 55678888888532 011112222221 236
Q ss_pred CEEEEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 180 DIViLavpd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
|+|+-++... +.++.....++++-.+++.
T Consensus 99 d~vid~~g~~---~~~~~a~~~l~~~G~iv~~ 127 (170)
T d1jvba2 99 DAVIDLNNSE---KTLSVYPKALAKQGKYVMV 127 (170)
T ss_dssp EEEEESCCCH---HHHTTGGGGEEEEEEEEEC
T ss_pred hhhhcccccc---hHHHhhhhhcccCCEEEEe
Confidence 8888777643 2334445566666655533
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.26 E-value=0.0093 Score=51.95 Aligned_cols=94 Identities=15% Similarity=0.082 Sum_probs=60.4
Q ss_pred hhccCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecC--------CCcCCHHhhc
Q 014834 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN--------GTLGDIYETI 176 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~-mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~--------~~~~s~~Ea~ 176 (417)
..++| |++.|||-++ .|.++|.-|.+. |..|.+.......... +...+.... .+-..+.+.+
T Consensus 25 ~~l~G-K~vvVIGrS~iVG~Pla~lL~~~------gaTVt~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~lk~~~ 95 (171)
T d1edza1 25 NRLYG-KKCIVINRSEIVGRPLAALLAND------GATVYSVDVNNIQKFT--RGESLKLNKHHVEDLGEYSEDLLKKCS 95 (171)
T ss_dssp CTTTT-CEEEEECCCTTTHHHHHHHHHTT------SCEEEEECSSEEEEEE--SCCCSSCCCCEEEEEEECCHHHHHHHH
T ss_pred CCCCC-CEEEEECCccccHHHHHHHHHHC------CCEEEEeccccccccc--cccceeeeeeccccccccchhHHhhcc
Confidence 57999 9999999885 599999999988 8887766543211100 000010000 0001256777
Q ss_pred CcCCEEEEccCCchHHHHHHHH-HhcCCCCcEEEEecC
Q 014834 177 SGSDLVLLLISDAAQADNYEKI-FSCMKPNSILGLSHG 213 (417)
Q Consensus 177 ~~ADIViLavpd~~~~~Vl~eI-~~~lk~gaiLi~a~G 213 (417)
.+||+||.+++.... .+ .+++|+|+++++.+.
T Consensus 96 ~~aDIvIsavG~p~~-----~i~~d~ik~GavvIDvGi 128 (171)
T d1edza1 96 LDSDVVITGVPSENY-----KFPTEYIKEGAVCINFAC 128 (171)
T ss_dssp HHCSEEEECCCCTTC-----CBCTTTSCTTEEEEECSS
T ss_pred ccCCEEEEccCCCcc-----ccChhhcccCceEeeccc
Confidence 899999999986432 01 246799999998764
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=94.24 E-value=0.18 Score=42.76 Aligned_cols=75 Identities=19% Similarity=0.131 Sum_probs=51.1
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcCceec-CCC-c-CCHHhh-----cCc
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGT-L-GDIYET-----ISG 178 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G~~~~-~~~-~-~s~~Ea-----~~~ 178 (417)
-+| .+|.|+|+|-+|...++.++.. |. +|++. +.++...+.|++.|.... +.. . ...++. =..
T Consensus 28 ~~g-~tVlI~G~GgvGl~ai~~ak~~------G~~~Vi~v-d~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G 99 (176)
T d1d1ta2 28 KPG-STCVVFGLGGVGLSVIMGCKSA------GASRIIGI-DLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNN 99 (176)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEE-CSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSC
T ss_pred CCC-CEEEEECCCchhHHHHHHHHHc------CCceEEEe-cCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhcccc
Confidence 356 8999999999999999999988 86 56544 444566899999997531 000 0 011111 145
Q ss_pred CCEEEEccCCch
Q 014834 179 SDLVLLLISDAA 190 (417)
Q Consensus 179 ADIViLavpd~~ 190 (417)
.|++|.++....
T Consensus 100 ~d~vi~~~g~~~ 111 (176)
T d1d1ta2 100 VGYTFEVIGHLE 111 (176)
T ss_dssp CCEEEECSCCHH
T ss_pred ceEEEEeCCchH
Confidence 888888887643
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=94.12 E-value=0.063 Score=46.64 Aligned_cols=97 Identities=23% Similarity=0.228 Sum_probs=63.6
Q ss_pred ccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcCceecC-CCcCCHHh----hc--CcC
Q 014834 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEEN-GTLGDIYE----TI--SGS 179 (417)
Q Consensus 108 l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G~~~~~-~~~~s~~E----a~--~~A 179 (417)
-.| .+|.|+|+|.+|...++.++.. |. .|++.+.. +...+.|++.|..... ....+..+ .. ..+
T Consensus 24 ~~G-~tVlV~GaG~vGl~a~~~ak~~------ga~~Vi~~d~~-~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~ 95 (195)
T d1kola2 24 GPG-STVYVAGAGPVGLAAAASARLL------GAAVVIVGDLN-PARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEV 95 (195)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEEESC-HHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCE
T ss_pred CCC-CEEEEECcCHHHHHHHHHHHhh------cccceeeeccc-chhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCc
Confidence 356 8999999999998888888877 66 55555444 5567899999975421 11122222 21 247
Q ss_pred CEEEEccCCc------------hHHHHHHHHHhcCCCCcEEEEec
Q 014834 180 DLVLLLISDA------------AQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 180 DIViLavpd~------------~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
|++|-++--. ...+.++.....++++-.|++.+
T Consensus 96 D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G 140 (195)
T d1kola2 96 DCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 140 (195)
T ss_dssp EEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred EEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEee
Confidence 9999887522 13456777667778877666444
|
| >d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=94.00 E-value=0.072 Score=44.59 Aligned_cols=69 Identities=9% Similarity=0.027 Sum_probs=45.6
Q ss_pred ccCCCEEEEEcccc---hHHHHHHHHHhhhhhhcCCcEEEEEecCCh--hhHHHHHHcCceecCCCcCCHHhhcCcCCEE
Q 014834 108 FNGINQIGVIGWGS---QGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (417)
Q Consensus 108 l~gmkkIgIIG~G~---mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s--~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIV 182 (417)
|+| .||+|||=++ +..|++..+... |.++++...+.. .......+.|... ..+.+++|+++++|+|
T Consensus 1 l~g-l~i~~vGD~~~sRv~~Sl~~~l~~~------g~~~~~~~p~~~~~~~~~~~~~~~~~~--~~~~d~~eai~~aDvv 71 (153)
T d1pg5a2 1 IDG-LVFALLGDLKYARTVNSLLRILTRF------RPKLVYLISPQLLRARKEILDELNYPV--KEVENPFEVINEVDVL 71 (153)
T ss_dssp STT-CEEEEEECCSSCHHHHHHHHHGGGS------CCSEEEEECCGGGCCCHHHHTTCCSCE--EEESCGGGTGGGCSEE
T ss_pred CCC-CEEEEECCCCccHHHHHHHHHHHHc------CCeeEEEecccccccchhhcccCCCeE--EEEeCHHHHhhcCCeE
Confidence 578 9999999754 799999998887 887544433211 1122333334321 0156899999999998
Q ss_pred EEc
Q 014834 183 LLL 185 (417)
Q Consensus 183 iLa 185 (417)
...
T Consensus 72 y~~ 74 (153)
T d1pg5a2 72 YVT 74 (153)
T ss_dssp EEE
T ss_pred EEe
Confidence 764
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=93.99 E-value=0.061 Score=46.60 Aligned_cols=91 Identities=13% Similarity=0.071 Sum_probs=53.8
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEe-c-CChhhHHHHHH--cCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGL-R-KGSRSFAEARA--AGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 111 mkkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~-r-~~s~s~~~A~~--~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
|.|||||| .|..|.-+.+-|.+. + .+++.... + ...+....... .+-.. -...+.++..+++|+||++
T Consensus 1 MikVaIvGATGyvG~eLirlL~~H-P----~~ei~~l~s~~~aG~~i~~~~p~~~~~~~--~~~~~~~~~~~~~dvvf~a 73 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNH-P----EAKITYLSSRTYAGKKLEEIFPSTLENSI--LSEFDPEKVSKNCDVLFTA 73 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHC-T----TEEEEEEECSTTTTSBHHHHCGGGCCCCB--CBCCCHHHHHHHCSEEEEC
T ss_pred CeEEEEECCCcHHHHHHHHHHHhC-C----CceEEEeeccccCCCcccccCchhhcccc--ccccCHhHhccccceEEEc
Confidence 68999999 689999999888654 1 23443222 2 22222222111 11110 0124566777789999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEecC
Q 014834 186 ISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 186 vpd~~~~~Vl~eI~~~lk~gaiLi~a~G 213 (417)
+|.....+... .. .+..|++.++
T Consensus 74 ~p~~~s~~~~~----~~-~~~~VIDlSa 96 (176)
T d1vkna1 74 LPAGASYDLVR----EL-KGVKIIDLGA 96 (176)
T ss_dssp CSTTHHHHHHT----TC-CSCEEEESSS
T ss_pred cccHHHHHHHH----hh-ccceEEecCc
Confidence 99877665543 33 4566776665
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=93.86 E-value=0.068 Score=47.80 Aligned_cols=84 Identities=11% Similarity=0.064 Sum_probs=55.6
Q ss_pred ccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 108 l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
|+| |++-|.|.+ -+|.++|+.|.+. |.+|++.+|+.++..+.+++.+... + .+|+ .
T Consensus 3 L~g-K~~lITGas~GIG~aia~~l~~~------G~~V~~~~r~~~~l~~~~~~~~~~~-----------~-~~Dv----~ 59 (242)
T d1ulsa_ 3 LKD-KAVLITGAAHGIGRATLELFAKE------GARLVACDIEEGPLREAAEAVGAHP-----------V-VMDV----A 59 (242)
T ss_dssp TTT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHTTTCEE-----------E-ECCT----T
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHcCCeE-----------E-EEec----C
Confidence 688 888898976 5999999999999 9999988887544444443333221 1 2342 3
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
.+....++++++...+.+=.+|+..+|+
T Consensus 60 ~~~~v~~~~~~~~~~~g~iDilVnnAG~ 87 (242)
T d1ulsa_ 60 DPASVERGFAEALAHLGRLDGVVHYAGI 87 (242)
T ss_dssp CHHHHHHHHHHHHHHHSSCCEEEECCCC
T ss_pred CHHHHHHHHHHHHHhcCCceEEEECCcc
Confidence 3344566777776655333367878876
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.83 E-value=0.15 Score=45.69 Aligned_cols=92 Identities=15% Similarity=0.001 Sum_probs=58.2
Q ss_pred chhhccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEE
Q 014834 104 LPDAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (417)
Q Consensus 104 ~~~~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIV 182 (417)
+++-||| |.+-|.|.+ -+|.++|+.|.+. |.+|++..|+.++..+.+.+. .+.-...+++
T Consensus 4 ~M~~lk~-Kv~lITGas~GIG~aiA~~la~~------G~~Vv~~~r~~~~l~~~~~~l------------~~~~~~~~~~ 64 (257)
T d1xg5a_ 4 GMERWRD-RLALVTGASGGIGAAVARALVQQ------GLKVVGCARTVGNIEELAAEC------------KSAGYPGTLI 64 (257)
T ss_dssp TCGGGTT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHH------------HHTTCSSEEE
T ss_pred CCCCCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHH------------HhcCCCceEE
Confidence 4567999 999999976 7999999999999 999988877643322222221 1111122333
Q ss_pred EEc---cCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 183 LLL---ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 183 iLa---vpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
.+. ..+....++++++...+.+=.+|+..+|+
T Consensus 65 ~~~~Dls~~~~v~~~v~~~~~~~g~iD~lVnnAg~ 99 (257)
T d1xg5a_ 65 PYRCDLSNEEDILSMFSAIRSQHSGVDICINNAGL 99 (257)
T ss_dssp EEECCTTCHHHHHHHHHHHHHHHCCCSEEEECCCC
T ss_pred EEEccCCCHHHHHHHHHHHHHhcCCCCEEEecccc
Confidence 332 33445567777776655333467777776
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=93.73 E-value=0.2 Score=44.55 Aligned_cols=89 Identities=13% Similarity=0.078 Sum_probs=56.3
Q ss_pred hccCCCEEEEEcc-c--chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEE
Q 014834 107 AFNGINQIGVIGW-G--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 107 ~l~gmkkIgIIG~-G--~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIVi 183 (417)
.|+| |++-|.|. | -||.++|+.|.+. |.+|++..|+. +..+..++ +.+....+.++.
T Consensus 2 ~L~g-K~alITGaag~~GIG~AiA~~la~~------Ga~V~i~~r~~-~~~~~~~~------------l~~~~~~~~~~~ 61 (274)
T d2pd4a1 2 FLKG-KKGLIVGVANNKSIAYGIAQSCFNQ------GATLAFTYLNE-SLEKRVRP------------IAQELNSPYVYE 61 (274)
T ss_dssp TTTT-CEEEEECCCSTTSHHHHHHHHHHTT------TCEEEEEESST-TTHHHHHH------------HHHHTTCCCEEE
T ss_pred cCCC-CEEEEECCCCCcHHHHHHHHHHHHC------CCEEEEEeCCH-HHHHHHHH------------HHhhCCceeEee
Confidence 3789 99999997 4 3999999999999 99999888763 32333222 112223344444
Q ss_pred EccCC-chHHHHHHHHHhcCCCCcEEEEecCch
Q 014834 184 LLISD-AAQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 184 Lavpd-~~~~~Vl~eI~~~lk~gaiLi~a~G~~ 215 (417)
.-+.+ ....++++++...+.+=.+++..+|..
T Consensus 62 ~d~~~~~~~~~~~~~~~~~~g~id~lV~nag~~ 94 (274)
T d2pd4a1 62 LDVSKEEHFKSLYNSVKKDLGSLDFIVHSVAFA 94 (274)
T ss_dssp CCTTCHHHHHHHHHHHHHHTSCEEEEEECCCCC
T ss_pred ecccchhhHHHHHHHHHHHcCCCCeEEeecccc
Confidence 43443 334567777766654434566677753
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=93.68 E-value=0.03 Score=47.63 Aligned_cols=32 Identities=31% Similarity=0.345 Sum_probs=29.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~ 149 (417)
|||.|||.|.-|.+-|..|++. |++|.|..+.
T Consensus 2 KkV~IIGaG~aGL~aA~~La~~------G~~V~vlE~~ 33 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLKIH------GLNVTVFEAE 33 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT------SCEEEEECSS
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCCEEEEeCC
Confidence 9999999999999999999999 9999888654
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=93.53 E-value=0.044 Score=49.56 Aligned_cols=88 Identities=15% Similarity=0.007 Sum_probs=54.2
Q ss_pred ccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc-
Q 014834 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL- 185 (417)
Q Consensus 108 l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa- 185 (417)
|+| |++-|.|. +.||.++|+.|.+. |.+|++..|+.++..+.+++. .+.-..+..+.+=
T Consensus 4 L~g-K~alITGas~GIG~aia~~la~~------G~~V~i~~r~~~~l~~~~~~~------------~~~~~~~~~~~~D~ 64 (258)
T d1ae1a_ 4 LKG-TTALVTGGSKGIGYAIVEELAGL------GARVYTCSRNEKELDECLEIW------------REKGLNVEGSVCDL 64 (258)
T ss_dssp CTT-CEEEEESCSSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHH------------HHTTCCEEEEECCT
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHH------------HhcCCCceEEEeec
Confidence 688 99999995 46999999999999 999998887644322222211 1111111122222
Q ss_pred cCCchHHHHHHHHHhcC-CCCcEEEEecCc
Q 014834 186 ISDAAQADNYEKIFSCM-KPNSILGLSHGF 214 (417)
Q Consensus 186 vpd~~~~~Vl~eI~~~l-k~gaiLi~a~G~ 214 (417)
..+....++++++.... .+-.+|+..+|.
T Consensus 65 s~~~~~~~~~~~~~~~~~g~idilinnag~ 94 (258)
T d1ae1a_ 65 LSRTERDKLMQTVAHVFDGKLNILVNNAGV 94 (258)
T ss_dssp TCHHHHHHHHHHHHHHTTSCCCEEEECCCC
T ss_pred CCHHHHHHHHHHHHHHhCCCcEEEeccccc
Confidence 33344456777777665 344567777775
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=93.33 E-value=0.013 Score=47.98 Aligned_cols=81 Identities=12% Similarity=0.140 Sum_probs=52.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhc-CcCCEEEEccCCch
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~-~~ADIViLavpd~~ 190 (417)
.+|.|+|+|++|.+++..++.+ .+++++.+.+.+.+.... .=.|+.+. ...+.++.+ +..++.++++|...
T Consensus 4 ~~v~I~GaG~~G~~l~~~l~~~-----~~~~iv~fiDdd~~k~G~-~I~Gi~V~--~~~~l~~~~~~~i~iai~~i~~~~ 75 (126)
T d2dt5a2 4 WGLCIVGMGRLGSALADYPGFG-----ESFELRGFFDVDPEKVGR-PVRGGVIE--HVDLLPQRVPGRIEIALLTVPREA 75 (126)
T ss_dssp EEEEEECCSHHHHHHHHCSCCC-----SSEEEEEEEESCTTTTTC-EETTEEEE--EGGGHHHHSTTTCCEEEECSCHHH
T ss_pred ceEEEEcCCHHHHHHHHhHhhc-----CCcEEEEEEeCchHhcCC-EECCEEEe--cHHHHHHHHhhcccEEEEeCCHHH
Confidence 3799999999999999877543 177877666654432211 11355431 012333433 45789999999888
Q ss_pred HHHHHHHHHh
Q 014834 191 QADNYEKIFS 200 (417)
Q Consensus 191 ~~~Vl~eI~~ 200 (417)
..++++.+..
T Consensus 76 ~~~I~d~l~~ 85 (126)
T d2dt5a2 76 AQKAADLLVA 85 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877544
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=93.31 E-value=0.088 Score=48.37 Aligned_cols=73 Identities=18% Similarity=0.191 Sum_probs=50.5
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhH--HHHHHcCceecCCCcCC----HHhhcCcCCEEEE
Q 014834 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF--AEARAAGFTEENGTLGD----IYETISGSDLVLL 184 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~--~~A~~~G~~~~~~~~~s----~~Ea~~~ADIViL 184 (417)
|+|.|+| .|.+|.+++..|.+. |++|++..|+.++.. ......|+....+...+ .+.++..+|.+++
T Consensus 4 ktIlVtGatG~iG~~lv~~Ll~~------G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~ 77 (350)
T d1xgka_ 4 KTIAVVGATGRQGASLIRVAAAV------GHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFI 77 (350)
T ss_dssp CCEEEESTTSHHHHHHHHHHHHT------TCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEE
T ss_pred CEEEEECCChHHHHHHHHHHHhC------CCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEe
Confidence 7899999 599999999999999 999988887643322 22222354432222223 3457889999999
Q ss_pred ccCCch
Q 014834 185 LISDAA 190 (417)
Q Consensus 185 avpd~~ 190 (417)
..++..
T Consensus 78 ~~~~~~ 83 (350)
T d1xgka_ 78 NTTSQA 83 (350)
T ss_dssp CCCSTT
T ss_pred eccccc
Confidence 887654
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.28 E-value=0.087 Score=47.30 Aligned_cols=87 Identities=14% Similarity=0.068 Sum_probs=56.3
Q ss_pred hccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
-|+| |++-|-|.+ -+|.++|+.|.+. |.+|++.+|+.++..+.+.+.+-.. . .-.+|+
T Consensus 3 ~L~g-K~alITGas~GIG~aia~~la~~------G~~V~~~~r~~~~~~~~~~~~~~~~---------~-~~~~Dv---- 61 (244)
T d1nffa_ 3 RLTG-KVALVSGGARGMGASHVRAMVAE------GAKVVFGDILDEEGKAMAAELADAA---------R-YVHLDV---- 61 (244)
T ss_dssp TTTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHTGGGE---------E-EEECCT----
T ss_pred ccCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHhhCcc---------e-EEEeec----
Confidence 3788 888888975 5999999999999 9999888887554444443332110 0 012332
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 186 vpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
+.+....++++++.....+=.+|+..+|+
T Consensus 62 ~~~~~v~~~~~~~~~~~g~idilinnAG~ 90 (244)
T d1nffa_ 62 TQPAQWKAAVDTAVTAFGGLHVLVNNAGI 90 (244)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEEECCcc
Confidence 23344567788777665444478888886
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=93.27 E-value=0.037 Score=46.87 Aligned_cols=87 Identities=23% Similarity=0.193 Sum_probs=60.1
Q ss_pred ccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHh------hcCcCC
Q 014834 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE------TISGSD 180 (417)
Q Consensus 108 l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~E------a~~~AD 180 (417)
-+| ++|.|.|. |.+|....+-++.. |.+|++..+++ ...+.+++.|... +.+..+ .-+.+|
T Consensus 26 ~~g-~~VlI~ga~G~vG~~aiqlak~~------G~~vi~~~~~~-~~~~~~~~lGa~~----~i~~~~~~~~~~~~~g~D 93 (171)
T d1iz0a2 26 RPG-EKVLVQAAAGALGTAAVQVARAM------GLRVLAAASRP-EKLALPLALGAEE----AATYAEVPERAKAWGGLD 93 (171)
T ss_dssp CTT-CEEEESSTTBHHHHHHHHHHHHT------TCEEEEEESSG-GGSHHHHHTTCSE----EEEGGGHHHHHHHTTSEE
T ss_pred CCC-CEEEEEeccccchhhhhhhhccc------ccccccccccc-cccccccccccce----eeehhhhhhhhhcccccc
Confidence 357 89999995 99999999988888 99887776654 4467888888753 222222 235689
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 181 IViLavpd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
+||=++.+. ++.....++++-.++..
T Consensus 94 ~v~d~~G~~-----~~~~~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 94 LVLEVRGKE-----VEESLGLLAHGGRLVYI 119 (171)
T ss_dssp EEEECSCTT-----HHHHHTTEEEEEEEEEC
T ss_pred ccccccchh-----HHHHHHHHhcCCcEEEE
Confidence 999887642 34455667776655543
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.26 E-value=0.1 Score=48.12 Aligned_cols=94 Identities=15% Similarity=0.105 Sum_probs=60.5
Q ss_pred hhhccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEE
Q 014834 105 PDAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIVi 183 (417)
|.-|+| |++-|.|.+ -+|.++|+.|.+. |.+|++.+|+.++..+.+.+..-. .. .....+++.
T Consensus 7 ~g~L~g-KvalITGas~GIG~aia~~la~~------Ga~Vvi~~r~~~~l~~~~~el~~~--------~~-~~~~~~~~~ 70 (297)
T d1yxma1 7 PGLLQG-QVAIVTGGATGIGKAIVKELLEL------GSNVVIASRKLERLKSAADELQAN--------LP-PTKQARVIP 70 (297)
T ss_dssp TTTTTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHT--------SC-TTCCCCEEE
T ss_pred CCCCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHhh--------hc-cccCceEEE
Confidence 466999 999999976 5999999999999 999998888755443433332100 00 012345554
Q ss_pred Ecc---CCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 184 LLI---SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 184 Lav---pd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
+.+ .++...++++++...+.+=.+|+..+|.
T Consensus 71 ~~~Dvs~~~~v~~~~~~~~~~~G~iDiLVnnAg~ 104 (297)
T d1yxma1 71 IQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGG 104 (297)
T ss_dssp EECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred EeccCCCHHHHHHHHHHHHHHhCCeEEEEeeccc
Confidence 442 3344556777776665444577777775
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=93.24 E-value=0.04 Score=47.12 Aligned_cols=32 Identities=25% Similarity=0.285 Sum_probs=30.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~ 149 (417)
+||.|||.|.+|.+.|..|.+. |++|.|..+.
T Consensus 7 ~kVvVIGaGiaGl~~A~~L~~~------G~~V~vier~ 38 (268)
T d1c0pa1 7 KRVVVLGSGVIGLSSALILARK------GYSVHILARD 38 (268)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESS
T ss_pred CcEEEECccHHHHHHHHHHHHC------CCCEEEEeCC
Confidence 7999999999999999999999 9999988874
|
| >d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Thermotoga maritima [TaxId: 2336]
Probab=93.19 E-value=0.1 Score=43.76 Aligned_cols=71 Identities=11% Similarity=0.096 Sum_probs=48.8
Q ss_pred ccCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecCC----hhhH----HHHHHcCceecCCCcCCHHhhcC
Q 014834 108 FNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSF----AEARAAGFTEENGTLGDIYETIS 177 (417)
Q Consensus 108 l~gmkkIgIIG~G--~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~----s~s~----~~A~~~G~~~~~~~~~s~~Ea~~ 177 (417)
|+| +||++||=| ++..|++..+... |+++.+..... .... +.+.+.+... ....+++++++
T Consensus 1 l~g-~ki~~vGD~~nnV~~Sli~~~~~~------g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i--~~~~d~~~ai~ 71 (161)
T d1vlva2 1 LKG-VKVVFMGDTRNNVATSLMIACAKM------GMNFVACGPEELKPRSDVFKRCQEIVKETDGSV--SFTSNLEEALA 71 (161)
T ss_dssp STT-CEEEEESCTTSHHHHHHHHHHHHT------TCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEE--EEESCHHHHHT
T ss_pred CCC-CEEEEEcCCccHHHHHHHHHHHHc------CCEEEEecchhhhhhhhHHHHHHHHHhhcCCce--EEEecHHHhhh
Confidence 678 999999954 6999999999888 99887664431 1111 2233334221 01468999999
Q ss_pred cCCEEEEccC
Q 014834 178 GSDLVLLLIS 187 (417)
Q Consensus 178 ~ADIViLavp 187 (417)
++|+|....-
T Consensus 72 ~aDviyt~~~ 81 (161)
T d1vlva2 72 GADVVYTDVW 81 (161)
T ss_dssp TCSEEEECCC
T ss_pred hhhheeccce
Confidence 9999997653
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.16 E-value=0.034 Score=46.50 Aligned_cols=32 Identities=16% Similarity=0.170 Sum_probs=29.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK 149 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~ 149 (417)
|||+|||.|..|...|..|++. |+ +|.|..+.
T Consensus 5 ~kVaIIGaGpaGl~aA~~l~~~------G~~~V~v~E~~ 37 (196)
T d1gtea4 5 AKIALLGAGPASISCASFLARL------GYSDITIFEKQ 37 (196)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCCCEEEEESS
T ss_pred CEEEEECChHHHHHHHHHHHHC------CCCeEEEEEec
Confidence 8999999999999999999999 98 58887765
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=93.13 E-value=0.076 Score=44.46 Aligned_cols=68 Identities=19% Similarity=0.230 Sum_probs=40.7
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEE--EEEecCChhhHHHHHHcCceecCCCcCC---HHhhcCcCCEEEE
Q 014834 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVV--KVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLL 184 (417)
Q Consensus 111 mkkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~V--iVg~r~~s~s~~~A~~~G~~~~~~~~~s---~~Ea~~~ADIViL 184 (417)
|++|.|.| .|.+|.++++.|.+. |++| +...|.. ..... ...++....+...+ ..++++++|.|+.
T Consensus 3 ~~tVlVtGatG~iG~~l~~~Ll~~------g~~v~v~~~~R~~-~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~ 74 (252)
T d2q46a1 3 LPTVLVTGASGRTGQIVYKKLKEG------SDKFVAKGLVRSA-QGKEK-IGGEADVFIGDITDADSINPAFQGIDALVI 74 (252)
T ss_dssp CCEEEEESTTSTTHHHHHHHHHHT------TTTCEEEEEESCH-HHHHH-TTCCTTEEECCTTSHHHHHHHHTTCSEEEE
T ss_pred CCEEEEECCccHHHHHHHHHHHHC------CCcEEEEEEcCCH-HHHHh-ccCCcEEEEeeeccccccccccccceeeEE
Confidence 79999999 699999999999998 8643 3233432 22211 11222211111222 3456778888877
Q ss_pred cc
Q 014834 185 LI 186 (417)
Q Consensus 185 av 186 (417)
+.
T Consensus 75 ~a 76 (252)
T d2q46a1 75 LT 76 (252)
T ss_dssp CC
T ss_pred EE
Confidence 64
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=93.07 E-value=0.042 Score=50.62 Aligned_cols=38 Identities=32% Similarity=0.362 Sum_probs=30.5
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~ 150 (417)
..||||+|||.|.-|.+.|..|++. +.+.+|+|..+.+
T Consensus 2 ~~~KrVaIIGaG~sGl~~A~~L~~~----~~~~~v~vfEk~~ 39 (335)
T d2gv8a1 2 PTIRKIAIIGAGPSGLVTAKALLAE----KAFDQVTLFERRG 39 (335)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHTT----TCCSEEEEECSSS
T ss_pred CCCCeEEEECcCHHHHHHHHHHHHh----CCCCCEEEEECCC
Confidence 3479999999999999999999876 1135888887753
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=93.06 E-value=0.078 Score=47.85 Aligned_cols=89 Identities=11% Similarity=0.056 Sum_probs=55.8
Q ss_pred hccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
-|+| |++-|.|.+ -+|.++|+.|.+. |.+|++.+|+.++..+.+.+.+-. .....+ .+|+
T Consensus 3 rL~g-KvalITGas~GIG~aia~~la~~------Ga~V~i~~r~~~~~~~~~~~l~~~-------~~~~~~-~~Dv---- 63 (268)
T d2bgka1 3 RLQD-KVAIITGGAGGIGETTAKLFVRY------GAKVVIADIADDHGQKVCNNIGSP-------DVISFV-HCDV---- 63 (268)
T ss_dssp TTTT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHCCT-------TTEEEE-ECCT----
T ss_pred CCCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHhcCC-------CceEEE-EccC----
Confidence 4789 888888866 5999999999999 999988887654433333332210 000011 2332
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 186 vpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
+.+....++++++.....+=.+|+..+|+
T Consensus 64 ~~~~~v~~~~~~~~~~~g~iD~lVnnAG~ 92 (268)
T d2bgka1 64 TKDEDVRNLVDTTIAKHGKLDIMFGNVGV 92 (268)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CCHHHHHHHHHHHHHHcCCcceecccccc
Confidence 34455567777776655433467777775
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.06 E-value=0.29 Score=40.35 Aligned_cols=102 Identities=18% Similarity=0.273 Sum_probs=62.3
Q ss_pred EEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 014834 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (417)
Q Consensus 113 kIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~~~ 191 (417)
||+|+| .|.||..+++.+... .++++..+.+..+.. . ...-.++|+||=-+.|...
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~-----~~~~l~~~~d~~~~~----------------~--~~~~~~~DvvIDFS~p~~~ 57 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAA-----DDLTLSAELDAGDPL----------------S--LLTDGNTEVVIDFTHPDVV 57 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHS-----TTSEEEEEECTTCCT----------------H--HHHTTTCSEEEECCCTTTH
T ss_pred CEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCCch----------------h--hhccccCCEEEEcccHHHH
Confidence 799999 599999999987664 167776555432110 0 1112468999999999998
Q ss_pred HHHHHHHHhcCCCCc-EEEEecCchhhhhhhcc--cCCCCCccEEEeccCCCc
Q 014834 192 ADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSIG--LDFPKNIGVIAVCPKGMG 241 (417)
Q Consensus 192 ~~Vl~eI~~~lk~ga-iLi~a~G~~i~~~~~~~--i~~~~dv~VI~v~Pntpg 241 (417)
.+.++....+ |. +|+=+.|++-..++.-. ..-.++++ |...||++-
T Consensus 58 ~~~~~~~~~~---~~~~ViGTTG~~~~~~~~l~~~~~~~~~ip-il~apNfSl 106 (135)
T d1yl7a1 58 MGNLEFLIDN---GIHAVVGTTGFTAERFQQVESWLVAKPNTS-VLIAPNFTS 106 (135)
T ss_dssp HHHHHHHHHT---TCEEEECCCCCCHHHHHHHHHHHHSCTTCE-EEECSCCGG
T ss_pred HHHHHHHHhc---CCCEEEeccccchhHHHHHHHHHHhcCCCC-EEEcCCccH
Confidence 8888765543 33 45556788643332100 00122333 457788764
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.03 E-value=0.023 Score=47.57 Aligned_cols=89 Identities=13% Similarity=0.051 Sum_probs=53.9
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc---EEEEEecC--ChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI---VVKVGLRK--GSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~---~ViVg~r~--~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
+||||||. |..|.-+.+-|.+. ++ ++.....+ ..+.. ..+.... .......+...++|++|++
T Consensus 3 mnVaIvGATGyvG~eli~lL~~~------~hP~~~l~~~~s~~~~Gk~i----~~~~~~~-~~~~~~~~~~~~~d~vf~a 71 (144)
T d2hjsa1 3 LNVAVVGATGSVGEALVGLLDER------DFPLHRLHLLASAESAGQRM----GFAESSL-RVGDVDSFDFSSVGLAFFA 71 (144)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHT------TCCCSCEEEEECTTTTTCEE----EETTEEE-ECEEGGGCCGGGCSEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHhc------CCCceEEEEEeecccCCcce----eeccccc-hhccchhhhhccceEEEec
Confidence 68999997 99999999988643 32 44322221 11111 1111100 0011123457889999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 186 vpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
+|.....+...++. +.|..|++.++.
T Consensus 72 ~p~~~s~~~~~~~~---~~g~~VID~Ss~ 97 (144)
T d2hjsa1 72 AAAEVSRAHAERAR---AAGCSVIDLSGA 97 (144)
T ss_dssp SCHHHHHHHHHHHH---HTTCEEEETTCT
T ss_pred CCcchhhhhccccc---cCCceEEeechh
Confidence 99887777776654 367788887774
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=92.82 E-value=0.12 Score=43.97 Aligned_cols=95 Identities=11% Similarity=0.213 Sum_probs=56.1
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEE-EEecC----ChhhHHHHHH--cCceec-CCCcCCHHhhcCcCCE
Q 014834 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRK----GSRSFAEARA--AGFTEE-NGTLGDIYETISGSDL 181 (417)
Q Consensus 111 mkkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~Vi-Vg~r~----~s~s~~~A~~--~G~~~~-~~~~~s~~Ea~~~ADI 181 (417)
|.||+||| -|-.|.-+.+-|.+. ..+++. +..+. ..+....... .+.... .....+..+...+.|+
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~H-----P~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv 75 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRH-----PHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDV 75 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHC-----TTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCE
T ss_pred CcEEEEECcccHHHHHHHHHHHhC-----CCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccce
Confidence 78999999 799999999988764 134443 22222 1122221111 111100 0001234455678999
Q ss_pred EEEccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 014834 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (417)
Q Consensus 182 ViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~G 213 (417)
+|+++|+....+....+.+ .|..+++.++
T Consensus 76 vf~alp~~~s~~~~~~~~~---~~~~vIDlSa 104 (179)
T d2g17a1 76 VFLATAHEVSHDLAPQFLQ---AGCVVFDLSG 104 (179)
T ss_dssp EEECSCHHHHHHHHHHHHH---TTCEEEECSS
T ss_pred eeccccchhHHHHhhhhhh---cCceeecccc
Confidence 9999999888877766543 5667776665
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.63 E-value=0.15 Score=42.72 Aligned_cols=90 Identities=19% Similarity=0.182 Sum_probs=59.6
Q ss_pred cCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec-CCCcCCHHhhc------CcCC
Q 014834 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (417)
Q Consensus 109 ~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~-~~~~~s~~Ea~------~~AD 180 (417)
+| .+|.|+|. |.+|.+..+-++.. |.+|++..++ ++..+.+++.|.... |-.-.+..+.+ +..|
T Consensus 28 ~g-~~VlV~Ga~G~vG~~aiq~a~~~------G~~vi~~~~~-~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d 99 (174)
T d1yb5a2 28 AG-ESVLVHGASGGVGLAACQIARAY------GLKILGTAGT-EEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGID 99 (174)
T ss_dssp TT-CEEEEETCSSHHHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEE
T ss_pred CC-CEEEEEecccccccccccccccc------Cccccccccc-ccccccccccCcccccccccccHHHHhhhhhccCCce
Confidence 56 89999995 99999999988888 9998777765 445688888887421 11112333322 2368
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEE
Q 014834 181 LVLLLISDAAQADNYEKIFSCMKPNSILGL 210 (417)
Q Consensus 181 IViLavpd~~~~~Vl~eI~~~lk~gaiLi~ 210 (417)
+|+-++.. +.++...+.++++-.++.
T Consensus 100 ~v~d~~g~----~~~~~~~~~l~~~G~iv~ 125 (174)
T d1yb5a2 100 IIIEMLAN----VNLSKDLSLLSHGGRVIV 125 (174)
T ss_dssp EEEESCHH----HHHHHHHHHEEEEEEEEE
T ss_pred EEeecccH----HHHHHHHhccCCCCEEEE
Confidence 88877763 345555566667655553
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=92.45 E-value=0.14 Score=45.80 Aligned_cols=88 Identities=19% Similarity=0.141 Sum_probs=56.0
Q ss_pred hccCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 107 AFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~-mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
.|+| |++-|.|.+. +|.++|+.|.+. |.+|++.+|+.++..+.+++.. ++. ..+++.+.
T Consensus 6 ~l~g-K~alITGas~GIG~aia~~la~~------Ga~V~i~~r~~~~~~~~~~~~~-----------~~~--g~~~~~~~ 65 (260)
T d1h5qa_ 6 SFVN-KTIIVTGGNRGIGLAFTRAVAAA------GANVAVIYRSAADAVEVTEKVG-----------KEF--GVKTKAYQ 65 (260)
T ss_dssp CCTT-EEEEEETTTSHHHHHHHHHHHHT------TEEEEEEESSCTTHHHHHHHHH-----------HHH--TCCEEEEE
T ss_pred cCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHH-----------HHh--CCceEEEE
Confidence 4789 8888989775 999999999999 9999988887655433333210 000 11222222
Q ss_pred ---cCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 186 ---ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 186 ---vpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
+.+....++++++.....+=.+|+..+|+
T Consensus 66 ~Dv~~~~~v~~~~~~~~~~~g~iDilVnnAg~ 97 (260)
T d1h5qa_ 66 CDVSNTDIVTKTIQQIDADLGPISGLIANAGV 97 (260)
T ss_dssp CCTTCHHHHHHHHHHHHHHSCSEEEEEECCCC
T ss_pred ccCCCHHHHHHHHHHHHHHhCCCcEecccccc
Confidence 33444566777777666443357777776
|
| >d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.32 E-value=0.17 Score=42.67 Aligned_cols=69 Identities=14% Similarity=0.102 Sum_probs=47.0
Q ss_pred ccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecC----ChhhHHHHHH----cCceecCCCcCCHHhhcCc
Q 014834 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEARA----AGFTEENGTLGDIYETISG 178 (417)
Q Consensus 108 l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~----~s~s~~~A~~----~G~~~~~~~~~s~~Ea~~~ 178 (417)
|+| +||++||-| ++..|++..|... |+++.+.... .....+.+++ .+... ....+.+|++++
T Consensus 2 l~g-l~Ia~VGD~~nv~~Sli~~l~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~ea~~~ 72 (163)
T d1pvva2 2 IKG-VKVVYVGDGNNVAHSLMIAGTKL------GADVVVATPEGYEPDEKVIKWAEQNAAESGGSF--ELLHDPVKAVKD 72 (163)
T ss_dssp CTT-CEEEEESCCCHHHHHHHHHHHHT------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEE--EEESCHHHHTTT
T ss_pred cCC-CEEEEECCCcHHHHHHHHHHHHc------CCeEEEecccccCCChHHHHHHHHhhhcccceE--EEecCHHHHhhh
Confidence 689 999999977 6778888888887 9988766432 2222333332 22211 115689999999
Q ss_pred CCEEEEc
Q 014834 179 SDLVLLL 185 (417)
Q Consensus 179 ADIViLa 185 (417)
+|+|..-
T Consensus 73 adviy~~ 79 (163)
T d1pvva2 73 ADVIYTD 79 (163)
T ss_dssp CSEEEEC
T ss_pred ccEEeec
Confidence 9998865
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=92.31 E-value=0.11 Score=46.66 Aligned_cols=86 Identities=15% Similarity=0.077 Sum_probs=56.7
Q ss_pred ccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 108 l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
|+| |++-|.|.+ -+|.++|+.|.+. |.+|++.+|+.++..+.+.+.|... . .-.+|+ +
T Consensus 3 L~g-K~alVTGas~GIG~aia~~la~~------Ga~V~~~~r~~~~l~~~~~~~~~~~---------~-~~~~Dv----t 61 (256)
T d1k2wa_ 3 LDG-KTALITGSARGIGRAFAEAYVRE------GARVAIADINLEAARATAAEIGPAA---------C-AIALDV----T 61 (256)
T ss_dssp TTT-EEEEEETCSSHHHHHHHHHHHHT------TEEEEEEESCHHHHHHHHHHHCTTE---------E-EEECCT----T
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHhCCce---------E-EEEeeC----C
Confidence 788 888898974 7999999999999 9999888886555444444443221 0 112333 3
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
.+....++++++...+.+=.+|+..+|+
T Consensus 62 ~~~~v~~~~~~~~~~~g~iDilVnnAg~ 89 (256)
T d1k2wa_ 62 DQASIDRCVAELLDRWGSIDILVNNAAL 89 (256)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CHHHHHHHHHHHHHHhCCccEEEeeccc
Confidence 4445567787776655333467777775
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.31 E-value=0.32 Score=43.37 Aligned_cols=91 Identities=13% Similarity=0.021 Sum_probs=58.6
Q ss_pred hhccCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~-mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
+.|.| |.|-|-|.+. +|.++|+.|.+. |.+|++.+|+.++..+.+.+. .+.-.++-.+..
T Consensus 3 ~~l~G-kv~lITGas~GIG~~ia~~la~~------G~~V~l~~r~~~~l~~~~~~~------------~~~~~~~~~~~~ 63 (244)
T d1yb1a_ 3 KSVTG-EIVLITGAGHGIGRLTAYEFAKL------KSKLVLWDINKHGLEETAAKC------------KGLGAKVHTFVV 63 (244)
T ss_dssp CCCTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHH------------HHTTCCEEEEEC
T ss_pred CCCCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHH------------HhcCCcEEEEEe
Confidence 56889 8888889886 999999999999 999999888654433333221 111111222222
Q ss_pred ccCCc-hHHHHHHHHHhcCCCCcEEEEecCch
Q 014834 185 LISDA-AQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 185 avpd~-~~~~Vl~eI~~~lk~gaiLi~a~G~~ 215 (417)
=+.+. .+.++++++...+.+=.+|+..+|+.
T Consensus 64 Dvs~~~~v~~~~~~i~~~~g~idilinnag~~ 95 (244)
T d1yb1a_ 64 DCSNREDIYSSAKKVKAEIGDVSILVNNAGVV 95 (244)
T ss_dssp CTTCHHHHHHHHHHHHHHTCCCSEEEECCCCC
T ss_pred eCCCHHHHHHHHHHHHHHcCCCceeEeecccc
Confidence 23343 34567777777665545778888864
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=92.27 E-value=0.1 Score=46.92 Aligned_cols=87 Identities=15% Similarity=0.047 Sum_probs=55.2
Q ss_pred hccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
-|+| |++-|.|.+ -+|.++|+.|.+. |.+|++.+|+.++..+.+.+.|-.. ..-.+|+
T Consensus 3 rL~g-K~alITGas~GIG~aia~~la~~------Ga~V~~~~~~~~~~~~~~~~~~~~~----------~~~~~Dv---- 61 (253)
T d1hxha_ 3 RLQG-KVALVTGGASGVGLEVVKLLLGE------GAKVAFSDINEAAGQQLAAELGERS----------MFVRHDV---- 61 (253)
T ss_dssp TTTT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEECSCHHHHHHHHHHHCTTE----------EEECCCT----
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHhCCCe----------EEEEeec----
Confidence 4789 888888865 5999999999999 9999888776444333333332110 0011222
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 186 vpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
+.+....++++++...+.+=.+|+..+|+
T Consensus 62 ~~~~~~~~~~~~~~~~~g~iDilVnnAG~ 90 (253)
T d1hxha_ 62 SSEADWTLVMAAVQRRLGTLNVLVNNAGI 90 (253)
T ss_dssp TCHHHHHHHHHHHHHHHCSCCEEEECCCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCeEEecccc
Confidence 23444566777776655444578888886
|
| >d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.16 E-value=0.19 Score=43.23 Aligned_cols=71 Identities=17% Similarity=0.137 Sum_probs=49.8
Q ss_pred hccCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecC----ChhhHHH----HHHcCceecCCCcCCHHhhc
Q 014834 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAE----ARAAGFTEENGTLGDIYETI 176 (417)
Q Consensus 107 ~l~gmkkIgIIG~G--~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~----~s~s~~~----A~~~G~~~~~~~~~s~~Ea~ 176 (417)
-|+| .||++||=| ++..|++..+... |+++.+.... .+...+. +.+.|... ....++++++
T Consensus 2 ~l~~-lkia~vGD~~nnV~~Sli~~~~~~------G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~eai 72 (185)
T d1dxha2 2 PLHD-ISYAYLGDARNNMGNSLLLIGAKL------GMDVRIAAPKALWPHDEFVAQCKKFAEESGAKL--TLTEDPKEAV 72 (185)
T ss_dssp CGGG-CEEEEESCCSSHHHHHHHHHHHHT------TCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEE--EEESCHHHHT
T ss_pred CCCC-CEEEEEcCCcchHHHHHHHHHHHc------CCEEEEEccHHHHhhhHHHHHHHHHhhccCCeE--EEEeChhhcc
Confidence 3788 899999944 8999999999988 9998776543 2222232 23344332 1156899999
Q ss_pred CcCCEEEEcc
Q 014834 177 SGSDLVLLLI 186 (417)
Q Consensus 177 ~~ADIViLav 186 (417)
+++|+|...+
T Consensus 73 ~~aDvVyt~~ 82 (185)
T d1dxha2 73 KGVDFVHTDV 82 (185)
T ss_dssp TTCSEEEECC
T ss_pred ccccEEEeeh
Confidence 9999998754
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=92.05 E-value=0.2 Score=45.14 Aligned_cols=35 Identities=20% Similarity=0.217 Sum_probs=30.4
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEe
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGL 147 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~ 147 (417)
..|+| ++|.|=|+|++|...|+.|.+. |.+|+...
T Consensus 27 ~~l~g-~~v~IqGfGnVG~~~a~~L~~~------Gakvv~vs 61 (242)
T d1v9la1 27 GGIEG-KTVAIQGMGNVGRWTAYWLEKM------GAKVIAVS 61 (242)
T ss_dssp SCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEEE
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEee
Confidence 46889 9999999999999999999998 98775433
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.00 E-value=0.11 Score=45.89 Aligned_cols=47 Identities=19% Similarity=0.085 Sum_probs=38.0
Q ss_pred hhccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH
Q 014834 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA 159 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~ 159 (417)
+.||| |.+-|.|.+ -+|.++|+.|.+. |.+|++.+|+.++..+.+++
T Consensus 1 ~slkG-KvalITGas~GIG~aia~~la~~------G~~V~~~~r~~~~~~~~~~~ 48 (248)
T d2o23a1 1 RSVKG-LVAVITGGASGLGLATAERLVGQ------GASAVLLDLPNSGGEAQAKK 48 (248)
T ss_dssp CCCTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEECTTSSHHHHHHH
T ss_pred CCCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEeCChHHHHHHHHH
Confidence 46899 998999977 4999999999999 99998888876655444444
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=91.87 E-value=0.071 Score=46.56 Aligned_cols=32 Identities=22% Similarity=0.209 Sum_probs=29.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~ 149 (417)
|||+|||.|.-|.+.|..|.+. |++|.|..+.
T Consensus 31 kkV~IIGaG~aGLsaA~~L~~~------G~~V~vlE~~ 62 (370)
T d2iida1 31 KHVVIVGAGMAGLSAAYVLAGA------GHQVTVLEAS 62 (370)
T ss_dssp CEEEEECCBHHHHHHHHHHHHH------TCEEEEECSS
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCCEEEEeCC
Confidence 8999999999999999999999 9999988654
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=91.86 E-value=0.073 Score=44.59 Aligned_cols=93 Identities=15% Similarity=0.182 Sum_probs=53.3
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc-EEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEccCCc
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLavpd~ 189 (417)
-||||||. |-.|.-+.+-|.+. .+ .+.+..-...++..+........ .......++...+.|++++++|+.
T Consensus 2 ~kVaIvGATGyvG~eLirlL~~H------~fp~~~l~~~~s~~s~G~~~~~~~~~-~~~~~~~~~~~~~~d~~f~~~~~~ 74 (154)
T d2gz1a1 2 YTVAVVGATGAVGAQMIKMLEES------TLPIDKIRYLASARSAGKSLKFKDQD-ITIEETTETAFEGVDIALFSAGSS 74 (154)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTC------CSCEEEEEEEECGGGTTCEEEETTEE-EEEEECCTTTTTTCSEEEECSCHH
T ss_pred CEEEEECCCcHHHHHHHHHHHcC------CCCceEEEEecccccccccccccCCc-ccccccchhhhhhhhhhhhccCcc
Confidence 58999997 99999998877654 43 22221111111111000011110 000123445677899999999987
Q ss_pred hHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 190 AQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 190 ~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
...+...+.. ..|..|++.++.
T Consensus 75 ~s~~~~~~~~---~~~~~VIDlSsd 96 (154)
T d2gz1a1 75 TSAKYAPYAV---KAGVVVVDNTSY 96 (154)
T ss_dssp HHHHHHHHHH---HTTCEEEECSST
T ss_pred chhhHHhhhc---cccceehhcChh
Confidence 7776665543 367788877763
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=91.85 E-value=0.074 Score=46.06 Aligned_cols=32 Identities=34% Similarity=0.413 Sum_probs=29.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~ 149 (417)
+||.|||.|.-|.+.|..|++. |++|+|..+.
T Consensus 5 ~kV~IiGaG~aGl~~A~~L~~~------G~~v~v~Er~ 36 (265)
T d2voua1 5 DRIAVVGGSISGLTAALMLRDA------GVDVDVYERS 36 (265)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred CcEEEECcCHHHHHHHHHHHHC------CCCEEEEeCC
Confidence 7999999999999999999999 9999998764
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=91.82 E-value=0.42 Score=42.78 Aligned_cols=88 Identities=15% Similarity=0.085 Sum_probs=55.7
Q ss_pred ccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc-
Q 014834 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL- 185 (417)
Q Consensus 108 l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa- 185 (417)
|+| |++-|-|.+ -+|.++|+.|.+. |.+|++.+|+.++..+...+ +.+...+..++.+.
T Consensus 2 l~g-K~alITGas~GIG~aia~~la~~------Ga~V~i~~r~~~~l~~~~~~------------~~~~~~~~~~~~~~~ 62 (258)
T d1iy8a_ 2 FTD-RVVLITGGGSGLGRATAVRLAAE------GAKLSLVDVSSEGLEASKAA------------VLETAPDAEVLTTVA 62 (258)
T ss_dssp CTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHH------------HHHHCTTCCEEEEEC
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHH------------HHhhCCCCeEEEEec
Confidence 688 888888977 5999999999999 99998888764332222211 11112233444332
Q ss_pred --cCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 186 --ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 186 --vpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
+.+....++++++...+.+=.+|+..+|+
T Consensus 63 Dvt~~~~v~~~~~~~~~~~G~iDiLVnnAG~ 93 (258)
T d1iy8a_ 63 DVSDEAQVEAYVTATTERFGRIDGFFNNAGI 93 (258)
T ss_dssp CTTSHHHHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCEEEECCcc
Confidence 23344566777776655433467877886
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=91.79 E-value=0.098 Score=46.30 Aligned_cols=39 Identities=15% Similarity=0.058 Sum_probs=33.3
Q ss_pred ccCCCEEEEEcc-cc--hHHHHHHHHHhhhhhhcCCcEEEEEecCChhh
Q 014834 108 FNGINQIGVIGW-GS--QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS 153 (417)
Q Consensus 108 l~gmkkIgIIG~-G~--mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s 153 (417)
|+| |++-|.|. |+ ||.++|+.|.+. |.+|++..++..+.
T Consensus 4 l~g-K~~lItGaag~~GIG~aiA~~la~~------Ga~Vil~~~~~~~~ 45 (268)
T d2h7ma1 4 LDG-KRILVSGIITDSSIAFHIARVAQEQ------GAQLVLTGFDRLRL 45 (268)
T ss_dssp TTT-CEEEECCCSSTTCHHHHHHHHHHHT------TCEEEEEECSCHHH
T ss_pred CCC-CEEEEECCCCCCHHHHHHHHHHHHc------CCEEEEEeCChHHH
Confidence 788 99999996 65 999999999999 99998888765543
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=91.77 E-value=0.11 Score=46.78 Aligned_cols=86 Identities=14% Similarity=0.062 Sum_probs=53.5
Q ss_pred ccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc-
Q 014834 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL- 185 (417)
Q Consensus 108 l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa- 185 (417)
|+| |++-|.|.+ -||.++|+.|.+. |.+|++.+|+.++..+...+ +.+. ...+..+.
T Consensus 6 L~G-K~alITGas~GIG~aia~~la~~------Ga~V~~~~r~~~~l~~~~~~------------~~~~--g~~~~~~~~ 64 (259)
T d2ae2a_ 6 LEG-CTALVTGGSRGIGYGIVEELASL------GASVYTCSRNQKELNDCLTQ------------WRSK--GFKVEASVC 64 (259)
T ss_dssp CTT-CEEEEESCSSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHH------------HHHT--TCEEEEEEC
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHH------------HHhc--CCCceEEEe
Confidence 678 999999987 4999999999999 99998888764332222211 1110 11122221
Q ss_pred --cCCchHHHHHHHHHhcCC-CCcEEEEecCc
Q 014834 186 --ISDAAQADNYEKIFSCMK-PNSILGLSHGF 214 (417)
Q Consensus 186 --vpd~~~~~Vl~eI~~~lk-~gaiLi~a~G~ 214 (417)
+.+....++++++...+. +=.+|+..+|+
T Consensus 65 Dv~~~~~v~~~~~~~~~~~~~~idilvnnAG~ 96 (259)
T d2ae2a_ 65 DLSSRSERQELMNTVANHFHGKLNILVNNAGI 96 (259)
T ss_dssp CTTCHHHHHHHHHHHHHHTTTCCCEEEECCCC
T ss_pred eCCCHHHHHHHHHHHHHHhCCCceEEEECCce
Confidence 233445567777766654 33467878876
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=91.69 E-value=0.15 Score=45.37 Aligned_cols=86 Identities=21% Similarity=0.127 Sum_probs=53.9
Q ss_pred ccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 108 l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
|+| |++-|-|.+ -+|.++|+.|.+. |.+|++.+|+.++..+.+.+.+-.. ..+ .+|+ +
T Consensus 2 l~g-K~alITGas~GIG~a~a~~l~~~------G~~Vv~~~r~~~~l~~~~~~~~~~~---------~~~-~~Dv----~ 60 (243)
T d1q7ba_ 2 FEG-KIALVTGASRGIGRAIAETLAAR------GAKVIGTATSENGAQAISDYLGANG---------KGL-MLNV----T 60 (243)
T ss_dssp CTT-CEEEESSCSSHHHHHHHHHHHHT------TCEEEEEESSHHHHHHHHHHHGGGE---------EEE-ECCT----T
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHhCCCC---------cEE-EEEe----c
Confidence 788 888887866 6999999999999 9999888876544434433332110 000 1222 2
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
.+....++++++.....+=.+|+..+|.
T Consensus 61 ~~~~v~~~~~~~~~~~g~iDilVnnAg~ 88 (243)
T d1q7ba_ 61 DPASIESVLEKIRAEFGEVDILVNNAGI 88 (243)
T ss_dssp CHHHHHHHHHHHHHHTCSCSEEEECCCC
T ss_pred CHHHhhhhhhhhhcccCCcceehhhhhh
Confidence 3344567888776655333367777765
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.55 E-value=0.12 Score=46.53 Aligned_cols=41 Identities=24% Similarity=0.303 Sum_probs=35.7
Q ss_pred hhhccCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCChh
Q 014834 105 PDAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR 152 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G~-mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~ 152 (417)
|+-|+| |++-|.|.++ +|.++|+.|.+. |.+|++..|+.++
T Consensus 9 ~~~L~G-K~alITGassGIG~aiA~~la~~------G~~Vil~~r~~~~ 50 (269)
T d1xu9a_ 9 PEMLQG-KKVIVTGASKGIGREMAYHLAKM------GAHVVVTARSKET 50 (269)
T ss_dssp GGGGTT-CEEEESSCSSHHHHHHHHHHHHT------TCEEEEEESCHHH
T ss_pred ccccCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCHHH
Confidence 466999 9999999886 999999999999 9999988887544
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=91.42 E-value=0.3 Score=43.47 Aligned_cols=86 Identities=14% Similarity=0.061 Sum_probs=54.1
Q ss_pred ccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhH-HHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 108 l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~-~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
|+| |.+-|.|.+ -||.++|+.|.+. |.+|++.+|+..+.. +..++.|... . .-.+|+
T Consensus 3 L~g-KvalVTGas~GIG~aia~~la~~------Ga~V~~~~~~~~~~~~~~~~~~g~~~---------~-~~~~Dv---- 61 (247)
T d2ew8a1 3 LKD-KLAVITGGANGIGRAIAERFAVE------GADIAIADLVPAPEAEAAIRNLGRRV---------L-TVKCDV---- 61 (247)
T ss_dssp TTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSCCHHHHHHHHHTTCCE---------E-EEECCT----
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCchHHHHHHHHHcCCcE---------E-EEEeeC----
Confidence 788 888888976 5999999999999 999988887643322 2222222110 0 112332
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 186 vpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
+.+....++++++...+.+=.+|+..+|+
T Consensus 62 s~~~~v~~~~~~~~~~~G~iDilVnnAG~ 90 (247)
T d2ew8a1 62 SQPGDVEAFGKQVISTFGRCDILVNNAGI 90 (247)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 33444556777776655333467777776
|
| >d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.42 E-value=0.16 Score=42.84 Aligned_cols=71 Identities=15% Similarity=0.128 Sum_probs=44.5
Q ss_pred ccCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCC----hhhH----HHHHHcCceecCCCcCCHHhhcCc
Q 014834 108 FNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSF----AEARAAGFTEENGTLGDIYETISG 178 (417)
Q Consensus 108 l~gmkkIgIIG~G~-mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~----s~s~----~~A~~~G~~~~~~~~~s~~Ea~~~ 178 (417)
|+| +||+|||-|+ +..|++..+..- |+++.+..... .... +.+.+.|.... .+.++++++++
T Consensus 2 l~g-l~I~~vGD~~nV~~Sli~~~~~~------g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~i~--~~~d~~~~~~~ 72 (170)
T d1otha2 2 LKG-LTLSWIGDGNNILHSIMMSAAKF------GMHLQAATPKGYEPDASVTKLAEQYAKENGTKLL--LTNDPLEAAHG 72 (170)
T ss_dssp CTT-CEEEEESCSSHHHHHHHTTTGGG------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEE--EESCHHHHHTT
T ss_pred CCC-CEEEEEcCchhHHHHHHHHHHHc------CCEEEEEeccccCCchHHHHHHHHHHhccCCEEE--EEcCHHHHHhh
Confidence 689 9999999874 445555555444 88877665431 1111 22333443210 15689999999
Q ss_pred CCEEEEccC
Q 014834 179 SDLVLLLIS 187 (417)
Q Consensus 179 ADIViLavp 187 (417)
+|+|+..+-
T Consensus 73 advi~~~~~ 81 (170)
T d1otha2 73 GNVLITDTW 81 (170)
T ss_dssp CSEEEECCS
T ss_pred hhheeeece
Confidence 999998754
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=91.24 E-value=0.11 Score=39.34 Aligned_cols=33 Identities=24% Similarity=0.132 Sum_probs=29.0
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~ 149 (417)
||+|||||.|..|.=++..-+.- |+++++.+..
T Consensus 1 ~k~vgIlG~GQLgrMl~~Aa~~L------G~~v~vldp~ 33 (78)
T d3etja2 1 MKQVCVLGNGQLGRMLRQAGEPL------GIAVWPVGLD 33 (78)
T ss_dssp CEEEEEEBCSHHHHHHHHHHGGG------TEEEEEECTT
T ss_pred CCEEEEEcCCHHHHHHHHHHHHc------CCEEEEEcCC
Confidence 68999999999999999998887 9998876643
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.18 E-value=0.28 Score=40.82 Aligned_cols=91 Identities=14% Similarity=0.092 Sum_probs=60.9
Q ss_pred cCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec-CCCcCCHHhhc------CcCC
Q 014834 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (417)
Q Consensus 109 ~gmkkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~-~~~~~s~~Ea~------~~AD 180 (417)
+| .+|.|+| .|.+|...++-++.. |.+|++..++. ...+.+++.|.... +....+..+.+ +..|
T Consensus 25 ~g-~~VlI~ga~g~vG~~~iqla~~~------g~~vi~~~~~~-~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g~d 96 (183)
T d1pqwa_ 25 PG-ERVLIHSATGGVGMAAVSIAKMI------GARIYTTAGSD-AKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVD 96 (183)
T ss_dssp TT-CEEEETTTTSHHHHHHHHHHHHH------TCEEEEEESSH-HHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEE
T ss_pred CC-CEEEEECCCCCcccccchhhccc------cccceeeeccc-ccccccccccccccccCCccCHHHHHHHHhCCCCEE
Confidence 46 8999988 499999999999888 99988777654 44678888885421 11112333333 4589
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 014834 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (417)
Q Consensus 181 IViLavpd~~~~~Vl~eI~~~lk~gaiLi~a 211 (417)
+|+-++.... +++....++++..++..
T Consensus 97 ~v~d~~g~~~----~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 97 VVLNSLAGEA----IQRGVQILAPGGRFIEL 123 (183)
T ss_dssp EEEECCCTHH----HHHHHHTEEEEEEEEEC
T ss_pred EEEecccchH----HHHHHHHhcCCCEEEEE
Confidence 9999988543 33444556666655543
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=91.17 E-value=0.31 Score=42.74 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=31.4
Q ss_pred ccCCCEEEEEcccc---hHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 014834 108 FNGINQIGVIGWGS---QGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (417)
Q Consensus 108 l~gmkkIgIIG~G~---mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~ 150 (417)
|+| |+|-|.|.++ +|.++|+.|.+. |.+|++.+|++
T Consensus 3 L~g-K~~lITGass~~GIG~aiA~~l~~~------G~~V~i~~~~~ 41 (258)
T d1qsga_ 3 LSG-KRILVTGVASKLSIAYGIAQAMHRE------GAELAFTYQND 41 (258)
T ss_dssp TTT-CEEEECCCCSTTSHHHHHHHHHHHT------TCEEEEEESST
T ss_pred CCC-CEEEEECCCCchhHHHHHHHHHHHc------CCEEEEEeCCH
Confidence 788 9999998765 889999999999 99998888763
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=91.16 E-value=0.34 Score=42.38 Aligned_cols=72 Identities=14% Similarity=0.153 Sum_probs=48.8
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCChh-------hHHHHHHcCceecCCCcCC---HHhhcCcCC
Q 014834 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-------SFAEARAAGFTEENGTLGD---IYETISGSD 180 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~-------s~~~A~~~G~~~~~~~~~s---~~Ea~~~AD 180 (417)
+||.|+| .|.+|..++..|.+. |++|++..|.... ........++....+...+ ..++++++|
T Consensus 4 ~KILVtGatG~iG~~l~~~L~~~------G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~ 77 (312)
T d1qyda_ 4 SRVLIVGGTGYIGKRIVNASISL------GHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVD 77 (312)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHT------TCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCS
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcc
Confidence 6899999 599999999999999 9999887775321 1122233455432222223 446788999
Q ss_pred EEEEccCCc
Q 014834 181 LVLLLISDA 189 (417)
Q Consensus 181 IViLavpd~ 189 (417)
.++.+.+..
T Consensus 78 ~~~~~~~~~ 86 (312)
T d1qyda_ 78 VVISALAGG 86 (312)
T ss_dssp EEEECCCCS
T ss_pred hhhhhhhhc
Confidence 999887643
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.05 E-value=0.3 Score=43.70 Aligned_cols=86 Identities=12% Similarity=0.038 Sum_probs=54.2
Q ss_pred hccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
-|+| |++-|-|. +-+|.++|+.|.+. |.+|++.+|+.++..+.+++.+-. ..-.+|+
T Consensus 3 rl~G-K~alITGas~GIG~aia~~la~~------Ga~V~i~~r~~~~~~~~~~~~~~~-----------~~~~~Dv---- 60 (250)
T d1ydea1 3 RYAG-KVVVVTGGGRGIGAGIVRAFVNS------GARVVICDKDESGGRALEQELPGA-----------VFILCDV---- 60 (250)
T ss_dssp TTTT-CEEEEETCSSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHCTTE-----------EEEECCT----
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHhcCCC-----------eEEEccC----
Confidence 4789 99999996 47999999999999 999988887644333333222100 0111231
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 186 vpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
+.++...++++++...+.+=.+|+..+|+
T Consensus 61 s~~~~v~~~~~~~~~~~g~iDilVnnAG~ 89 (250)
T d1ydea1 61 TQEDDVKTLVSETIRRFGRLDCVVNNAGH 89 (250)
T ss_dssp TSHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEecccc
Confidence 23344556777776655333467777775
|
| >d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=91.05 E-value=0.17 Score=41.89 Aligned_cols=71 Identities=18% Similarity=0.185 Sum_probs=50.7
Q ss_pred ccCCCEEEEEcc---cchHHHHHHHHHhhhhhhcCCcEEEEEecCC----hhhHHHHHHcCceecCCCcCCHHhhcCcCC
Q 014834 108 FNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISGSD 180 (417)
Q Consensus 108 l~gmkkIgIIG~---G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~----s~s~~~A~~~G~~~~~~~~~s~~Ea~~~AD 180 (417)
|+| .||+|||= ++...|++..+... |.++.+..... +.....+.+.+... ..+.+++++++++|
T Consensus 2 l~g-l~i~~vGD~~~srV~~Sli~~~~~~------g~~~~~~~P~~~~~~~~~~~~~~~~~~~~--~~~~d~~~av~~aD 72 (157)
T d1ml4a2 2 IDG-LKIGLLGDLKYGRTVHSLAEALTFY------DVELYLISPELLRMPRHIVEELREKGMKV--VETTTLEDVIGKLD 72 (157)
T ss_dssp SSS-EEEEEESCTTTCHHHHHHHHHGGGS------CEEEEEECCGGGCCCHHHHHHHHHTTCCE--EEESCTHHHHTTCS
T ss_pred cCC-CEEEEEcCCccChHHHHHHHHHHhc------CCcEEEEccchhhcchHHHHHHHhhcccc--eeecCHHHhhccCc
Confidence 578 99999997 57899999999887 98887765432 22234444554331 11568999999999
Q ss_pred EEEEccC
Q 014834 181 LVLLLIS 187 (417)
Q Consensus 181 IViLavp 187 (417)
+|....-
T Consensus 73 vvy~~~~ 79 (157)
T d1ml4a2 73 VLYVTRI 79 (157)
T ss_dssp EEEECCC
T ss_pred EEEeecc
Confidence 9887654
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=91.02 E-value=0.3 Score=43.56 Aligned_cols=83 Identities=19% Similarity=0.123 Sum_probs=55.1
Q ss_pred ccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 108 l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
|+| |++-|.|. +-||.++|+.|.+. |.+|++.+|+.+ ..+.+++.+... + .+|+ +
T Consensus 3 l~G-K~alITGas~GIG~aia~~la~~------G~~V~~~~~~~~-~~~~~~~~~~~~-----------~-~~Dv----~ 58 (248)
T d2d1ya1 3 FAG-KGVLVTGGARGIGRAIAQAFARE------GALVALCDLRPE-GKEVAEAIGGAF-----------F-QVDL----E 58 (248)
T ss_dssp TTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSTT-HHHHHHHHTCEE-----------E-ECCT----T
T ss_pred cCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHH-HHHHHHHcCCeE-----------E-EEeC----C
Confidence 788 99988884 47999999999999 999988887643 344444433221 1 2343 3
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
.+....++++++...+.+=.+|+..+|+
T Consensus 59 ~~~~v~~~~~~~~~~~G~iDiLVnnAG~ 86 (248)
T d2d1ya1 59 DERERVRFVEEAAYALGRVDVLVNNAAI 86 (248)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CHHHHHHHHHHHHHhcCCCCeEEEeCcC
Confidence 3344566777776655333467888886
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=91.00 E-value=0.14 Score=45.98 Aligned_cols=87 Identities=21% Similarity=0.236 Sum_probs=53.9
Q ss_pred hccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
-|+| |++-|.|.+ -+|.++|+.|.+. |.+|++.+|+.++ .+.+.+ .+.+ ...++..+.
T Consensus 2 rL~g-K~alITGas~GIG~aia~~la~~------Ga~V~~~~r~~~~-l~~~~~-----------~~~~--~g~~~~~~~ 60 (260)
T d1zema1 2 KFNG-KVCLVTGAGGNIGLATALRLAEE------GTAIALLDMNREA-LEKAEA-----------SVRE--KGVEARSYV 60 (260)
T ss_dssp TTTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHH-HHHHHH-----------HHHT--TTSCEEEEE
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHH-HHHHHH-----------HHHh--cCCcEEEEE
Confidence 4789 999999986 4999999999999 9999888876433 222221 0111 112333322
Q ss_pred ---cCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 186 ---ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 186 ---vpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
+.+....++++++...+.+=.+|+..+|+
T Consensus 61 ~Dv~~~~~v~~~~~~~~~~~g~iDilVnnaG~ 92 (260)
T d1zema1 61 CDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGY 92 (260)
T ss_dssp CCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred ccCCCHHHHHHHHHHHHHHhCCCCeehhhhcc
Confidence 23344567777766555333367777775
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=90.99 E-value=0.12 Score=46.73 Aligned_cols=86 Identities=13% Similarity=0.150 Sum_probs=54.2
Q ss_pred ccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH---cCceecCCCcCCHHhhcCcCCEEE
Q 014834 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 108 l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~---~G~~~~~~~~~s~~Ea~~~ADIVi 183 (417)
|+| |++-|.|.+ -||.++|+.|.+. |.+|++.+|+.++..+.+.+ .|.. ..++..
T Consensus 3 L~g-K~alVTGas~GIG~aia~~la~~------Ga~V~l~~r~~~~l~~~~~~l~~~~~~--------------~~~~~~ 61 (272)
T d1xkqa_ 3 FSN-KTVIITGSSNGIGRTTAILFAQE------GANVTITGRSSERLEETRQIILKSGVS--------------EKQVNS 61 (272)
T ss_dssp TTT-CEEEETTCSSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHTTTCC--------------GGGEEE
T ss_pred CCC-CEEEEeCcCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHhcCCC--------------CCceEE
Confidence 788 998898976 5999999999999 99999888764433222222 1111 112222
Q ss_pred Ec---cCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 184 LL---ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 184 La---vpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
+. +.+....++++++...+.+=.+|+..+|.
T Consensus 62 ~~~Dvs~~~~v~~~~~~~~~~~g~iDilvnnAG~ 95 (272)
T d1xkqa_ 62 VVADVTTEDGQDQIINSTLKQFGKIDVLVNNAGA 95 (272)
T ss_dssp EECCTTSHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred EEccCCCHHHHHHHHHHHHHHhCCceEEEeCCcc
Confidence 22 23444556777776655333467777776
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=90.98 E-value=0.6 Score=41.14 Aligned_cols=89 Identities=19% Similarity=0.209 Sum_probs=52.6
Q ss_pred hccCCCEEEEEcccc---hHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEE
Q 014834 107 AFNGINQIGVIGWGS---QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~---mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIVi 183 (417)
.|+| |++-|.|.+. +|.++|+.|.+. |.+|++.+|.+ +..+.+++.. +.-..+..+-
T Consensus 5 ~L~g-K~alITGas~~~GIG~aiA~~la~~------Ga~V~i~~~~~-~~~~~~~~~~------------~~~~~~~~~~ 64 (256)
T d1ulua_ 5 DLSG-KKALVMGVTNQRSLGFAIAAKLKEA------GAEVALSYQAE-RLRPEAEKLA------------EALGGALLFR 64 (256)
T ss_dssp CCTT-CEEEEESCCCSSSHHHHHHHHHHHT------TCEEEEEESSG-GGHHHHHHHH------------HHTTCCEEEE
T ss_pred CCCC-CEEEEECCCCCchHHHHHHHHHHHC------CCEEEEEeCcH-HHHHHHHHhh------------hccCcccccc
Confidence 4889 9999999853 999999999999 99998877653 3333332210 1111111221
Q ss_pred EccC-CchHHHHHHHHHhcCCCCcEEEEecCch
Q 014834 184 LLIS-DAAQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 184 Lavp-d~~~~~Vl~eI~~~lk~gaiLi~a~G~~ 215 (417)
.-+. +....++++++.....+=.+|+..+|+.
T Consensus 65 ~D~~~~~~v~~~~~~~~~~~g~iDilVnnag~~ 97 (256)
T d1ulua_ 65 ADVTQDEELDALFAGVKEAFGGLDYLVHAIAFA 97 (256)
T ss_dssp CCTTCHHHHHHHHHHHHHHHSSEEEEEECCCCC
T ss_pred cccCCHHHHHHHHHHHHHhcCCceEEEeccccc
Confidence 1223 3344567777665543222566677763
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.94 E-value=0.077 Score=47.07 Aligned_cols=34 Identities=26% Similarity=0.326 Sum_probs=30.3
Q ss_pred CC-EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 014834 111 IN-QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (417)
Q Consensus 111 mk-kIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~ 150 (417)
|| +|.|||.|.-|.++|..|.+. |++|.|..+..
T Consensus 1 mk~~V~IvGaGp~Gl~~A~~L~~~------G~~v~vlE~~~ 35 (292)
T d1k0ia1 1 MKTQVAIIGAGPSGLLLGQLLHKA------GIDNVILERQT 35 (292)
T ss_dssp CBCSEEEECCSHHHHHHHHHHHHH------TCCEEEECSSC
T ss_pred CCCCEEEECcCHHHHHHHHHHHHC------CCCEEEEeCCC
Confidence 45 799999999999999999999 99998887653
|
| >d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: Dhaf3308-like family: Dhaf3308-like domain: Hypothetical protein Dhaf 3308 species: Desulfitobacterium hafniense [TaxId: 49338]
Probab=90.90 E-value=0.19 Score=45.66 Aligned_cols=85 Identities=13% Similarity=0.180 Sum_probs=54.6
Q ss_pred ccccccchhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcC
Q 014834 98 RDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS 177 (417)
Q Consensus 98 ~~~f~~~~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~ 177 (417)
.+.|.......+| +||++||+ + +....+++. +.++.|..++.. .|..+ ....++++.
T Consensus 110 ~d~~~~~~~~~~g-~kV~vIG~--~--P~v~~l~~~------~~~~~VlE~~p~--------~gd~p----~~~~~~lLp 166 (251)
T d2h1qa1 110 NDPFIMSQNEVKG-KKVGVVGH--F--PHLESLLEP------ICDLSILEWSPE--------EGDYP----LPASEFILP 166 (251)
T ss_dssp CCHHHHTTTTTTT-SEEEEESC--C--TTHHHHHTT------TSEEEEEESSCC--------TTCEE----GGGHHHHGG
T ss_pred ccchhhhccccCC-CEEEEEec--c--hhHHHHHhc------CCcEEEEeCCCC--------CCCCC----chHHHHhhh
Confidence 3456665667788 99999986 5 456667888 888888887531 24332 245778999
Q ss_pred cCCEEEEccCCchHHHHHHHHHhcCCCCc
Q 014834 178 GSDLVLLLISDAAQADNYEKIFSCMKPNS 206 (417)
Q Consensus 178 ~ADIViLavpd~~~~~Vl~eI~~~lk~ga 206 (417)
+||+||+.-. ......++.|..+-++..
T Consensus 167 ~aD~viiTGs-TlvN~Tl~~LL~~~~~a~ 194 (251)
T d2h1qa1 167 ECDYVYITCA-SVVDKTLPRLLELSRNAR 194 (251)
T ss_dssp GCSEEEEETH-HHHHTCHHHHHHHTTTSS
T ss_pred cCCEEEEEec-hhhcCCHHHHHHhCCcCC
Confidence 9999987532 222334445555544443
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=90.89 E-value=0.26 Score=44.04 Aligned_cols=88 Identities=17% Similarity=0.099 Sum_probs=55.2
Q ss_pred hccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc
Q 014834 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (417)
Q Consensus 107 ~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa 185 (417)
.|+| |++-|.|.+ -+|.++|+.|.+. |.+|++.+|+.++..+.+.+. .+.. ..+++.+.
T Consensus 2 ~l~g-K~~lITGas~GIG~aia~~la~~------Ga~V~i~~r~~~~~~~~~~~l------------~~~~-g~~~~~~~ 61 (251)
T d1vl8a_ 2 DLRG-RVALVTGGSRGLGFGIAQGLAEA------GCSVVVASRNLEEASEAAQKL------------TEKY-GVETMAFR 61 (251)
T ss_dssp CCTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHH------------HHHH-CCCEEEEE
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHH------------HHHh-CCcEEEEE
Confidence 3788 999999976 5999999999999 999988887654433322221 0100 12232222
Q ss_pred ---cCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 186 ---ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 186 ---vpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
+.+....++++++...+.+=.+|+..+|+
T Consensus 62 ~Dv~~~~~v~~~~~~~~~~~g~iDiLVnnAG~ 93 (251)
T d1vl8a_ 62 CDVSNYEEVKKLLEAVKEKFGKLDTVVNAAGI 93 (251)
T ss_dssp CCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred ccCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 23344456777776655333467878876
|
| >d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Escherichia coli [TaxId: 562]
Probab=90.76 E-value=0.28 Score=41.85 Aligned_cols=73 Identities=15% Similarity=0.127 Sum_probs=50.8
Q ss_pred hhccCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecC----Chhh----HHHHHHcCceecCCCcCCHHhh
Q 014834 106 DAFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRS----FAEARAAGFTEENGTLGDIYET 175 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G--~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~----~s~s----~~~A~~~G~~~~~~~~~s~~Ea 175 (417)
+.|+| .||++||=| ++..|++..+..- |+++.+.... +... .+.+...|... ..+.+++++
T Consensus 1 k~~~~-l~i~~vGD~~nnv~~Sli~~~~~~------g~~l~~~~P~~~~~~~~~~~~~~~~~~~~g~~~--~~~~d~~~a 71 (183)
T d1duvg2 1 KAFNE-MTLVYAGDARNNMGNSMLEAAALT------GLDLRLVAPQACWPEAALVTECRALAQQNGGNI--TLTEDVAKG 71 (183)
T ss_dssp CCGGG-CEEEEESCTTSHHHHHHHHHHHHH------CCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEE--EEESCHHHH
T ss_pred CCcCC-CEEEEEcCCccHHHHHHHHHHHHc------CCEEEEEechHhhhhHHHHHHHHHHHHhcCCce--EEEechhhc
Confidence 45788 899999955 7999999999888 9988766442 1121 23334455432 125689999
Q ss_pred cCcCCEEEEccC
Q 014834 176 ISGSDLVLLLIS 187 (417)
Q Consensus 176 ~~~ADIViLavp 187 (417)
++++|+|..-+=
T Consensus 72 ~~~aDvvyt~~w 83 (183)
T d1duvg2 72 VEGADFIYTDVW 83 (183)
T ss_dssp HTTCSEEEECCS
T ss_pred cccCCEEEEEeh
Confidence 999999987543
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=90.69 E-value=0.088 Score=44.79 Aligned_cols=32 Identities=25% Similarity=0.259 Sum_probs=29.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~ 149 (417)
++|+|||.|.-|.+.|..|.+. |++|.|..+.
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~~------G~~V~vlE~~ 32 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRSR------GTDAVLLESS 32 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHTT------TCCEEEECSS
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCCEEEEecC
Confidence 5799999999999999999999 9999888654
|
| >d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=90.67 E-value=0.29 Score=40.43 Aligned_cols=93 Identities=15% Similarity=0.214 Sum_probs=70.2
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcC--cCCEEEEccCC
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~--~ADIViLavpd 188 (417)
.||-|-|. |.+|.-+++.+++. |-+|+.|..++..-. .-.|+.+ +.+.+|+++ ++|.=++-+||
T Consensus 16 TrVivQGiTG~~G~~ht~~m~~Y------GT~iVaGVtPgKgG~---~~~giPV----f~tV~eA~~~~~~daSvIfVPp 82 (130)
T d1euca1 16 TKVICQGFTGKQGTFHSQQALEY------GTNLVGGTTPGKGGK---THLGLPV----FNTVKEAKEQTGATASVIYVPP 82 (130)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTTCTTC---EETTEEE----ESSHHHHHHHHCCCEEEECCCH
T ss_pred CeEEEEcCCCcHHHHHHHHHHHh------cCCeEEeeccCCCCc---cccCccc----hhhHHHHHHhcCCcEEEEecCH
Confidence 58999998 99999999999999 999887876532111 1246665 678888875 79999999998
Q ss_pred chHHH-HHHHHHhcCCCCcEEEEecCchhhhh
Q 014834 189 AAQAD-NYEKIFSCMKPNSILGLSHGFLLGHL 219 (417)
Q Consensus 189 ~~~~~-Vl~eI~~~lk~gaiLi~a~G~~i~~~ 219 (417)
....+ +++.+...++ .++++.-|+.+...
T Consensus 83 ~~a~dAi~EAi~agI~--liV~ITEgIPv~Dm 112 (130)
T d1euca1 83 PFAAAAINEAIDAEVP--LVVCITEGIPQQDM 112 (130)
T ss_dssp HHHHHHHHHHHHTTCS--EEEECCCCCCHHHH
T ss_pred HHHHHHHHHHHhCCCC--EEEEecCCCCHHHH
Confidence 87764 7777776664 36778889876443
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=90.67 E-value=0.1 Score=41.78 Aligned_cols=32 Identities=19% Similarity=0.171 Sum_probs=29.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~ 149 (417)
.||||||.|..|.-++...++- |+++++.+..
T Consensus 12 ~kigIlGgGQL~rMla~aA~~l------G~~v~v~d~~ 43 (111)
T d1kjqa2 12 TRVMLLGSGELGKEVAIECQRL------GVEVIAVDRY 43 (111)
T ss_dssp CEEEEESCSHHHHHHHHHHHTT------TCEEEEEESS
T ss_pred CEEEEEeCCHHHHHHHHHHHHC------CCEEEEEcCC
Confidence 7899999999999999999988 9999887654
|
| >d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Bacillus subtilis [TaxId: 1423]
Probab=90.57 E-value=0.1 Score=43.75 Aligned_cols=64 Identities=20% Similarity=0.198 Sum_probs=46.2
Q ss_pred ccCCCEEEEEcc---cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 108 FNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 108 l~gmkkIgIIG~---G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
|+| .||+|||= ++++.|++..+..- |+++.+..... ... .+..+.. ..+++|+++++|+|..
T Consensus 1 F~g-l~i~~vGD~~~srv~~Sl~~~~~~~------g~~~~i~~P~~--~~~--~~~~~~~----~~~~~ea~~~aDviy~ 65 (151)
T d2at2a2 1 FKG-LTVSIHGDIKHSRVARSNAEVLTRL------GARVLFSGPSE--WQD--EENTFGT----YVSMDEAVESSDVVML 65 (151)
T ss_pred CCC-CEEEEEcCCCCCHHHHHHHHHHHHc------CCcccccCCch--hhc--cccceeE----EEechhccccCceeee
Confidence 678 99999996 57999999999887 98876654331 111 1223333 5688999999999886
Q ss_pred cc
Q 014834 185 LI 186 (417)
Q Consensus 185 av 186 (417)
..
T Consensus 66 ~r 67 (151)
T d2at2a2 66 LR 67 (151)
T ss_pred eE
Confidence 53
|
| >d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Escherichia coli [TaxId: 562]
Probab=90.49 E-value=0.48 Score=38.52 Aligned_cols=92 Identities=16% Similarity=0.249 Sum_probs=68.8
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcC--cCCEEEEccCC
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~--~ADIViLavpd 188 (417)
.||-|-|. |.+|.-+++.+++. |-+|+.|..+...-. .-.|+.+ +.+.+|+++ ++|.=++-+||
T Consensus 7 trVlvQGiTG~~G~~ht~~m~~y------GT~vVaGVtPgkgG~---~~~giPV----f~sV~eAv~~~~~~~SvIfVPp 73 (119)
T d2nu7a1 7 TKVICQGFTGSQGTFHSEQAIAY------GTKMVGGVTPGKGGT---THLGLPV----FNTVREAVAATGATASVIYVPA 73 (119)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTTCTTE---EETTEEE----ESSHHHHHHHHCCCEEEECCCG
T ss_pred CcEEEEcCCCcHHHHHHHHHHHh------CCceEEEEccCCCCc---ccCCCch----hhHHHHHHHHhCCCeEEEeccH
Confidence 68999998 99999999999999 999887876532111 1246665 678888765 68999999998
Q ss_pred chHH-HHHHHHHhcCCCCcEEEEecCchhhh
Q 014834 189 AAQA-DNYEKIFSCMKPNSILGLSHGFLLGH 218 (417)
Q Consensus 189 ~~~~-~Vl~eI~~~lk~gaiLi~a~G~~i~~ 218 (417)
.... .+++.+...++ .++++.-|+.++.
T Consensus 74 ~~a~dA~~EAi~agI~--~iV~ITEgIP~~D 102 (119)
T d2nu7a1 74 PFCKDSILEAIDAGIK--LIITITEGIPTLD 102 (119)
T ss_dssp GGHHHHHHHHHHTTCS--EEEECCCCCCHHH
T ss_pred HHHHHHHHHHHHCCCC--EEEEecCCCCHHH
Confidence 8775 47777766663 3677888886643
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.46 E-value=0.26 Score=43.93 Aligned_cols=87 Identities=17% Similarity=0.087 Sum_probs=52.7
Q ss_pred cCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc--
Q 014834 109 NGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL-- 185 (417)
Q Consensus 109 ~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa-- 185 (417)
+| |++-|.|.+ -+|.++|+.|.+. |.+|++.+|+.++..+.+.+..-. .....+..+.
T Consensus 2 ~G-KvalITGas~GIG~aia~~la~~------Ga~V~i~~r~~~~~~~~~~~l~~~------------~~~~~~~~~~~D 62 (254)
T d2gdza1 2 NG-KVALVTGAAQGIGRAFAEALLLK------GAKVALVDWNLEAGVQCKAALHEQ------------FEPQKTLFIQCD 62 (254)
T ss_dssp TT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHTTT------------SCGGGEEEEECC
T ss_pred CC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHHh------------cCCCcEEEEEee
Confidence 57 778888875 5999999999999 999988888754433333332111 1111222221
Q ss_pred -cCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 186 -ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 186 -vpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
+.+....++++++...+.+=.+|+..+|+
T Consensus 63 v~~~~~v~~~~~~~~~~~G~iDilVnnAg~ 92 (254)
T d2gdza1 63 VADQQQLRDTFRKVVDHFGRLDILVNNAGV 92 (254)
T ss_dssp TTSHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred cCCHHHHHHHHHHHHHHcCCcCeecccccc
Confidence 33344456777766555332367777775
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=90.45 E-value=0.13 Score=47.53 Aligned_cols=32 Identities=19% Similarity=0.296 Sum_probs=29.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~ 149 (417)
|||.|||.|.-|.+.|..|.+. |++|.|...+
T Consensus 3 KKI~IIGaG~sGL~aA~~L~k~------G~~V~viEk~ 34 (314)
T d2bi7a1 3 KKILIVGAGFSGAVIGRQLAEK------GHQVHIIDQR 34 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT------TCEEEEEESS
T ss_pred CEEEEECCcHHHHHHHHHHHhC------CCCEEEEECC
Confidence 8999999999999999999998 9999888765
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=90.30 E-value=0.41 Score=42.78 Aligned_cols=42 Identities=21% Similarity=0.195 Sum_probs=35.4
Q ss_pred hhhccCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhh
Q 014834 105 PDAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS 153 (417)
Q Consensus 105 ~~~l~gmkkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s 153 (417)
+..|+| |++-|.| .+-+|.++|+.|.+. |.+|++.+++.++.
T Consensus 13 ~~sL~g-K~~lITGas~GIG~aia~~la~~------Ga~Vvi~~~~~~~~ 55 (272)
T d1g0oa_ 13 SASLEG-KVALVTGAGRGIGREMAMELGRR------GCKVIVNYANSTES 55 (272)
T ss_dssp GGCCTT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEEESSCHHH
T ss_pred CcCCCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEeCCchHH
Confidence 577999 9999999 558999999999999 99998887765443
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=90.25 E-value=0.51 Score=41.99 Aligned_cols=88 Identities=16% Similarity=0.095 Sum_probs=53.4
Q ss_pred ccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc-
Q 014834 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL- 185 (417)
Q Consensus 108 l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa- 185 (417)
|+| |++-|.|.+ -||.++|+.|.+. |.+|++..|++....+...+. +.+. ...+++.+.
T Consensus 2 L~g-K~alITGas~GIG~aiA~~la~~------Ga~V~~~~r~~~~~~~~~~~~-----------~~~~-~g~~~~~~~~ 62 (260)
T d1x1ta1 2 LKG-KVAVVTGSTSGIGLGIATALAAQ------GADIVLNGFGDAAEIEKVRAG-----------LAAQ-HGVKVLYDGA 62 (260)
T ss_dssp CTT-CEEEETTCSSHHHHHHHHHHHHT------TCEEEEECCSCHHHHHHHHHH-----------HHHH-HTSCEEEECC
T ss_pred CCc-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEeCCcHHHHHHHHHH-----------HHHh-cCCcEEEEEC
Confidence 678 777777766 4999999999999 999988887654333322210 0000 112333332
Q ss_pred --cCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 186 --ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 186 --vpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
+.+....++++++...+.+=.+|+..+|+
T Consensus 63 Dv~~~~~v~~~~~~~~~~~G~iDiLVnnAG~ 93 (260)
T d1x1ta1 63 DLSKGEAVRGLVDNAVRQMGRIDILVNNAGI 93 (260)
T ss_dssp CTTSHHHHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred CCCCHHHHHHHHHHHHHHhCCCcEEEeeccc
Confidence 23344456777776655333468888886
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=90.10 E-value=0.22 Score=45.09 Aligned_cols=85 Identities=13% Similarity=0.050 Sum_probs=53.7
Q ss_pred ccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEcc
Q 014834 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (417)
Q Consensus 108 l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLav 186 (417)
|+| |++-|-|. +-+|.++|+.|.+. |.+|++.+|+.++..+...+.|- ++..+..=+
T Consensus 3 L~g-K~alITGas~GIG~aia~~la~~------Ga~V~i~~r~~~~l~~~~~~~~~---------------~~~~~~~Dv 60 (276)
T d1bdba_ 3 LKG-EAVLITGGASGLGRALVDRFVAE------GAKVAVLDKSAERLAELETDHGD---------------NVLGIVGDV 60 (276)
T ss_dssp TTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHGG---------------GEEEEECCT
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHcCC---------------CeeEEeccc
Confidence 788 99999996 48999999999999 99999888764443333333221 111222222
Q ss_pred CC-chHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 187 SD-AAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 187 pd-~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
.+ ....++++++.....+=.+++..+|+
T Consensus 61 ~~~~~~~~~~~~~~~~~g~idilvnnAG~ 89 (276)
T d1bdba_ 61 RSLEDQKQAASRCVARFGKIDTLIPNAGI 89 (276)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEECCCCC
T ss_pred ccHHHHHHHHHHHHHHhCCcccccccccc
Confidence 33 33456777766655443467777775
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=89.63 E-value=0.16 Score=45.95 Aligned_cols=88 Identities=18% Similarity=0.180 Sum_probs=53.5
Q ss_pred ccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH---cCceecCCCcCCHHhh-cCcCCEE
Q 014834 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYET-ISGSDLV 182 (417)
Q Consensus 108 l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~---~G~~~~~~~~~s~~Ea-~~~ADIV 182 (417)
|+| |++-|-|.+ -+|.++|+.|.+. |.+|++.+|+.++..+.+.+ .|.. ...+ .-.+|+
T Consensus 2 L~g-K~alITGas~GIG~aia~~la~~------Ga~V~~~~r~~~~l~~~~~~i~~~~~~--------~~~~~~~~~Dv- 65 (274)
T d1xhla_ 2 FSG-KSVIITGSSNGIGRSAAVIFAKE------GAQVTITGRNEDRLEETKQQILKAGVP--------AEKINAVVADV- 65 (274)
T ss_dssp CTT-CEEEETTCSSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTTCC--------GGGEEEEECCT-
T ss_pred CCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHHcCCC--------CcceEEEEeeC-
Confidence 688 999999976 5999999999999 99998888764433222221 2211 0000 011221
Q ss_pred EEccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 183 LLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 183 iLavpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
+.+....++++++...+.+=.+|+..+|.
T Consensus 66 ---~~~~~v~~~~~~~~~~~G~iDilVnnAG~ 94 (274)
T d1xhla_ 66 ---TEASGQDDIINTTLAKFGKIDILVNNAGA 94 (274)
T ss_dssp ---TSHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred ---CCHHHHHHHHHHHHHHcCCceEEEeeccc
Confidence 33445567777776655333467777775
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=89.50 E-value=0.19 Score=40.45 Aligned_cols=33 Identities=27% Similarity=0.420 Sum_probs=27.9
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCC--cEEEEEecC
Q 014834 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSD--IVVKVGLRK 149 (417)
Q Consensus 110 gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G--~~ViVg~r~ 149 (417)
| |||.|||.|..|-.+|..|++. + .+|++..+.
T Consensus 2 g-krivIvGgG~~G~e~A~~l~~~------~~~~~Vtlie~~ 36 (186)
T d1fcda1 2 G-RKVVVVGGGTGGATAAKYIKLA------DPSIEVTLIEPN 36 (186)
T ss_dssp C-CEEEEECCSHHHHHHHHHHHHH------CTTSEEEEECSC
T ss_pred C-CcEEEECccHHHHHHHHHHHHc------CCCCcEEEEECC
Confidence 7 9999999999999999999997 5 467665543
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=89.25 E-value=0.53 Score=40.53 Aligned_cols=74 Identities=22% Similarity=0.259 Sum_probs=48.9
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhh--H------HHHHHcCceecCCCcCC---HHhhcCcC
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS--F------AEARAAGFTEENGTLGD---IYETISGS 179 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s--~------~~A~~~G~~~~~~~~~s---~~Ea~~~A 179 (417)
|||.|+|. |.+|.+++..|.++ |++|++..|..... . ......++....+...+ ..+.++.+
T Consensus 4 kKILVtGatG~iG~~l~~~L~~~------G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 77 (307)
T d1qyca_ 4 SRILLIGATGYIGRHVAKASLDL------GHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNV 77 (307)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHT------TCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTC
T ss_pred CEEEEECCCcHHHHHHHHHHHHC------CCeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhhhc
Confidence 78999996 99999999999999 99998877753321 1 11122344332222222 34667889
Q ss_pred CEEEEccCCchH
Q 014834 180 DLVLLLISDAAQ 191 (417)
Q Consensus 180 DIViLavpd~~~ 191 (417)
|.|+.+......
T Consensus 78 ~~vi~~~~~~~~ 89 (307)
T d1qyca_ 78 DVVISTVGSLQI 89 (307)
T ss_dssp SEEEECCCGGGS
T ss_pred eeeeeccccccc
Confidence 998888765443
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=89.18 E-value=0.16 Score=44.35 Aligned_cols=31 Identities=26% Similarity=0.095 Sum_probs=28.4
Q ss_pred EEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 014834 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (417)
Q Consensus 114 IgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~ 150 (417)
|.|||.|.+|.+.|..|.+. |.+|+|..+..
T Consensus 7 vvIIGaGi~Gls~A~~La~~------G~~V~vlE~~~ 37 (276)
T d1ryia1 7 AVVIGGGIIGSAIAYYLAKE------NKNTALFESGT 37 (276)
T ss_dssp EEEECCSHHHHHHHHHHHHT------TCCEEEECSSS
T ss_pred EEEECcCHHHHHHHHHHHHC------CCcEEEEeCCC
Confidence 99999999999999999999 99999887653
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=88.54 E-value=0.18 Score=41.22 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=28.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK 149 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~ 149 (417)
.+|.|||.|.-|.+.|..|.+. |+ +|.|..+.
T Consensus 1 P~V~IIGaG~aGL~aA~~L~~~------G~~~V~vlE~~ 33 (347)
T d1b5qa1 1 PRVIVVGAGMSGISAAKRLSEA------GITDLLILEAT 33 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHHT------TCCCEEEECSS
T ss_pred CCEEEECCcHHHHHHHHHHHhC------CCCcEEEEECC
Confidence 4799999999999999999999 97 68887654
|
| >d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Thermus thermophilus [TaxId: 274]
Probab=88.49 E-value=0.63 Score=37.88 Aligned_cols=92 Identities=16% Similarity=0.285 Sum_probs=67.8
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcC--cCCEEEEccCC
Q 014834 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (417)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~--~ADIViLavpd 188 (417)
.||-|-|. |.+|.-+++.+++. |-+|+.|..+...-. .-.|+.+ +.+.+|+++ ++|.=++-+||
T Consensus 8 trVivQGiTG~~G~~ht~~m~~y------GT~iVaGVtPgkgG~---~~~giPV----f~tV~eAv~~~~~d~SvIfVPp 74 (121)
T d1oi7a1 8 TRVLVQGITGREGQFHTKQMLTY------GTKIVAGVTPGKGGM---EVLGVPV----YDTVKEAVAHHEVDASIIFVPA 74 (121)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTTCTTC---EETTEEE----ESSHHHHHHHSCCSEEEECCCH
T ss_pred CcEEEEcCCCcHHHHHHHHHHHh------CCceEeeeecCCCCc---EEECCch----HhhHHHHHHhcCCeEEEEeeCH
Confidence 58999997 99999999999999 999888876532111 1136665 667887654 78999999998
Q ss_pred chHHH-HHHHHHhcCCCCcEEEEecCchhhh
Q 014834 189 AAQAD-NYEKIFSCMKPNSILGLSHGFLLGH 218 (417)
Q Consensus 189 ~~~~~-Vl~eI~~~lk~gaiLi~a~G~~i~~ 218 (417)
....+ +++.+...++ .++++.-|+.+..
T Consensus 75 ~~a~dAi~EAi~agI~--liv~ITEgVPv~D 103 (121)
T d1oi7a1 75 PAAADAALEAAHAGIP--LIVLITEGIPTLD 103 (121)
T ss_dssp HHHHHHHHHHHHTTCS--EEEECCSCCCHHH
T ss_pred HHHHHHHHHHHhCCCc--EEEEecCCCCHHH
Confidence 87764 6666766553 3677888886543
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.37 E-value=0.33 Score=43.09 Aligned_cols=45 Identities=27% Similarity=0.262 Sum_probs=36.0
Q ss_pred ccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH
Q 014834 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA 159 (417)
Q Consensus 108 l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~ 159 (417)
|+| |++-|.|.+ -+|.++|+.|.+. |.+|++.+|+.++..+.+++
T Consensus 3 l~G-K~alITGas~GIG~aia~~la~~------Ga~V~~~~r~~~~l~~~~~~ 48 (242)
T d1cyda_ 3 FSG-LRALVTGAGKGIGRDTVKALHAS------GAKVVAVTRTNSDLVSLAKE 48 (242)
T ss_dssp CTT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHH
T ss_pred CCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHh
Confidence 789 999999976 5999999999999 99998888875544444433
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=88.05 E-value=0.29 Score=38.23 Aligned_cols=36 Identities=11% Similarity=0.032 Sum_probs=31.3
Q ss_pred hccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 014834 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 107 ~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~ 149 (417)
...+ ++|.|||.|.+|--+|..|++. |.+|.+..+.
T Consensus 19 ~~~~-~~vvVvGgG~ig~E~A~~l~~~------g~~vt~i~~~ 54 (121)
T d1mo9a2 19 YEPG-STVVVVGGSKTAVEYGCFFNAT------GRRTVMLVRT 54 (121)
T ss_dssp SCCC-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred hCCC-CEEEEECCCHHHHHHHHHHHhc------chhheEeecc
Confidence 4457 9999999999999999999998 9888887664
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=88.04 E-value=0.32 Score=43.74 Aligned_cols=42 Identities=19% Similarity=0.200 Sum_probs=35.3
Q ss_pred hhhccCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhh
Q 014834 105 PDAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS 153 (417)
Q Consensus 105 ~~~l~gmkkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s 153 (417)
+..|+| |++-|.| .|-+|.++|+.|.+. |.+|++.+|+..+.
T Consensus 20 ~~~l~g-K~alITGas~GIG~aiA~~la~~------Ga~Vii~~r~~~~l 62 (294)
T d1w6ua_ 20 PNSFQG-KVAFITGGGTGLGKGMTTLLSSL------GAQCVIASRKMDVL 62 (294)
T ss_dssp TTTTTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHHH
T ss_pred CCCCCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEECCHHHH
Confidence 368999 8888888 568999999999999 99999888875443
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.01 E-value=0.24 Score=42.09 Aligned_cols=32 Identities=25% Similarity=0.323 Sum_probs=29.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~ 149 (417)
+||.|||.|.-|.+-|..|.+. |++|.|....
T Consensus 6 ~kViVIGaG~aGL~aA~~L~~~------G~~V~VlEa~ 37 (449)
T d2dw4a2 6 GKVIIIGSGVSGLAAARQLQSF------GMDVTLLEAR 37 (449)
T ss_dssp CEEEEECCBHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred CcEEEECCCHHHHHHHHHHHhC------CCCEEEEeCC
Confidence 6899999999999999999999 9999887543
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=88.01 E-value=0.66 Score=41.64 Aligned_cols=34 Identities=26% Similarity=0.371 Sum_probs=27.8
Q ss_pred chhhccCCCEEEEEcccchHHHHHHHHH-hhhhhhcCCcEEE
Q 014834 104 LPDAFNGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVK 144 (417)
Q Consensus 104 ~~~~l~gmkkIgIIG~G~mG~AiA~~Lr-~s~~~~~~G~~Vi 144 (417)
+.+.|+| ++|+|-|+|++|..+|+.|. +. |..|+
T Consensus 26 g~~~l~g-~~v~IqGfGnVG~~~a~~L~~~~------G~kvv 60 (239)
T d1gtma1 26 GWDTLKG-KTIAIQGYGNAGYYLAKIMSEDF------GMKVV 60 (239)
T ss_dssp TCSCSTT-CEEEEECCSHHHHHHHHHHHHTT------CCEEE
T ss_pred CCCCcCC-CEEEEECCCHHHHHHHHHHHHhc------Cccee
Confidence 3356899 99999999999999999885 45 76654
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=87.95 E-value=0.76 Score=41.10 Aligned_cols=89 Identities=11% Similarity=0.155 Sum_probs=54.6
Q ss_pred hhccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEE
Q 014834 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (417)
Q Consensus 106 ~~l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViL 184 (417)
+.|+| |++-|.|. +-+|.++|+.|.+. |.+|++.+|+.+...+...+ .+.+. ..+++.+
T Consensus 3 ~dL~g-K~alITGas~GIG~aia~~la~~------G~~Vv~~~r~~~~~~~~~~~-----------~~~~~--g~~~~~~ 62 (261)
T d1geea_ 3 KDLEG-KVVVITGSSTGLGKSMAIRFATE------KAKVVVNYRSKEDEANSVLE-----------EIKKV--GGEAIAV 62 (261)
T ss_dssp GGGTT-CEEEETTCSSHHHHHHHHHHHHT------TCEEEEEESSCHHHHHHHHH-----------HHHHT--TCEEEEE
T ss_pred CCCCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEeCCcHHHHHHHHH-----------HHHhc--CCcEEEE
Confidence 35899 88888885 47999999999999 99998888865432222211 01110 1122222
Q ss_pred c---cCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 185 L---ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 185 a---vpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
. +.+....++++++...+.+=.+|+..+|+
T Consensus 63 ~~Dvt~~~~v~~~~~~~~~~~G~iDiLVnnAG~ 95 (261)
T d1geea_ 63 KGDVTVESDVINLVQSAIKEFGKLDVMINNAGL 95 (261)
T ss_dssp ECCTTSHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred EccCCCHHHHHHHHHHHHHHhCCCCEeecccee
Confidence 1 33444556777776655333467878876
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=87.91 E-value=0.31 Score=38.10 Aligned_cols=33 Identities=21% Similarity=0.175 Sum_probs=29.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~ 150 (417)
++|.|||.|.+|--+|..|.+. |.+|.+..+.+
T Consensus 23 ~~v~IiGgG~ig~E~A~~l~~~------G~~Vtlve~~~ 55 (117)
T d1ebda2 23 KSLVVIGGGYIGIELGTAYANF------GTKVTILEGAG 55 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT------TCEEEEEESSS
T ss_pred CeEEEECCCccceeeeeeeccc------ccEEEEEEecc
Confidence 7999999999999999999998 99998887653
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=87.74 E-value=0.57 Score=41.71 Aligned_cols=37 Identities=22% Similarity=0.207 Sum_probs=32.6
Q ss_pred hhccCCCEEEEEcccc---hHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 014834 106 DAFNGINQIGVIGWGS---QGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~---mG~AiA~~Lr~s~~~~~~G~~ViVg~r~ 149 (417)
-.|+| |++-|.|.+. +|.++|+.|.+. |.+|++..|.
T Consensus 4 ~~L~g-K~alVTGass~~GIG~aiA~~la~~------Ga~Vvi~~~~ 43 (297)
T d1d7oa_ 4 IDLRG-KRAFIAGIADDNGYGWAVAKSLAAA------GAEILVGTWV 43 (297)
T ss_dssp CCCTT-CEEEEECCSSSSSHHHHHHHHHHHT------TCEEEEEEEH
T ss_pred cCCCC-CEEEEECCCCCchHHHHHHHHHHHC------CCEEEEEeCc
Confidence 45899 9999999864 999999999999 9999888775
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=87.70 E-value=0.35 Score=38.49 Aligned_cols=34 Identities=26% Similarity=0.161 Sum_probs=30.4
Q ss_pred cCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 014834 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 109 ~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~ 149 (417)
++ ++|.|||.|.+|--+|..|++. |.+|.+..+.
T Consensus 29 ~~-k~vvViGgG~iG~E~A~~l~~~------g~~Vtlie~~ 62 (123)
T d1nhpa2 29 EV-NNVVVIGSGYIGIEAAEAFAKA------GKKVTVIDIL 62 (123)
T ss_dssp TC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESS
T ss_pred CC-CEEEEECChHHHHHHHHHhhcc------ceEEEEEEec
Confidence 45 8999999999999999999999 9998887664
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=87.67 E-value=0.35 Score=38.55 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=29.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~ 149 (417)
++|.|||.|.+|--+|..|++. |.+|.+..+.
T Consensus 31 ~~vvIIGgG~iG~E~A~~l~~~------g~~Vtli~~~ 62 (121)
T d1d7ya2 31 SRLLIVGGGVIGLELAATARTA------GVHVSLVETQ 62 (121)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESS
T ss_pred CeEEEECcchhHHHHHHHhhcc------cceEEEEeec
Confidence 8999999999999999999999 9998887664
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=87.64 E-value=0.3 Score=38.41 Aligned_cols=32 Identities=13% Similarity=0.074 Sum_probs=29.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~ 149 (417)
++|.|||.|..|--+|..|++. |.+|.+..+.
T Consensus 22 ~~vvIiGgG~ig~E~A~~l~~~------G~~Vtlve~~ 53 (116)
T d1gesa2 22 ERVAVVGAGYIGVELGGVINGL------GAKTHLFEMF 53 (116)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred CEEEEECCChhhHHHHHHhhcc------ccEEEEEeec
Confidence 7999999999999999999998 9999888765
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=87.60 E-value=0.76 Score=41.04 Aligned_cols=34 Identities=18% Similarity=0.128 Sum_probs=28.1
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHH-hhhhhhcCCcEEEEE
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVG 146 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr-~s~~~~~~G~~ViVg 146 (417)
..++| ++|+|=|+|++|...|+.|. +. |..|+..
T Consensus 27 ~~l~g-~~vaIqG~GnVG~~~a~~L~~e~------Ga~vv~v 61 (234)
T d1b26a1 27 IDPKK-ATVAVQGFGNVGQFAALLISQEL------GSKVVAV 61 (234)
T ss_dssp CCTTT-CEEEEECCSHHHHHHHHHHHHHH------CCEEEEE
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHhc------CCceEEe
Confidence 46789 99999999999999999995 56 7766533
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=87.59 E-value=0.19 Score=44.37 Aligned_cols=35 Identities=20% Similarity=0.200 Sum_probs=31.3
Q ss_pred ccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 014834 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 108 l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~ 149 (417)
|+| |++-|.|.+ -+|.++|+.|.+. |.+|++.+|+
T Consensus 2 Lkg-K~~lVTGas~GIG~aia~~l~~~------Ga~V~~~~r~ 37 (234)
T d1o5ia_ 2 IRD-KGVLVLAASRGIGRAVADVLSQE------GAEVTICARN 37 (234)
T ss_dssp CTT-CEEEEESCSSHHHHHHHHHHHHT------TCEEEEEESC
T ss_pred CCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECC
Confidence 688 999999976 5999999999999 9999888775
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.21 E-value=0.4 Score=42.46 Aligned_cols=46 Identities=22% Similarity=0.195 Sum_probs=36.2
Q ss_pred hccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH
Q 014834 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA 159 (417)
Q Consensus 107 ~l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~ 159 (417)
.|+| |++-|.|.+ -+|.++|+.|.+. |.+|++.+|+.++..+.+.+
T Consensus 4 ~L~G-K~~lITGas~GIG~aia~~la~~------G~~V~~~~r~~~~l~~~~~~ 50 (244)
T d1pr9a_ 4 FLAG-RRVLVTGAGKGIGRGTVQALHAT------GARVVAVSRTQADLDSLVRE 50 (244)
T ss_dssp CCTT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHH
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEECCHHHHHHHHHh
Confidence 4789 999999976 6999999999999 99998888765443333333
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=87.10 E-value=0.57 Score=39.91 Aligned_cols=95 Identities=18% Similarity=0.218 Sum_probs=53.1
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEE-ecC-ChhhHHHHHHcCceecCC-CcCCHHhhcCcCCEEEEccC
Q 014834 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVG-LRK-GSRSFAEARAAGFTEENG-TLGDIYETISGSDLVLLLIS 187 (417)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg-~r~-~s~s~~~A~~~G~~~~~~-~~~s~~Ea~~~ADIViLavp 187 (417)
.|||||| .|-.|.-+.+-|.+. ..+++... .++ ..+........-....+- .....++...++|+||+++|
T Consensus 6 ikVaIlGATGyvG~elirLL~~H-----P~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp 80 (183)
T d2cvoa1 6 VRIAVLGASGYTGAEIVRLLANH-----PQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCCLP 80 (183)
T ss_dssp EEEEEESCSSHHHHHHHHHHTTC-----SSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEECCS
T ss_pred cEEEEECcccHHHHHHHHHHHhC-----CCceEEEEeccccCCCccccccccccccccccchhhhhhhhcccceeeeccc
Confidence 4799999 588888888877754 13354322 222 222222221110000000 01224456789999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 188 d~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
...-.++...+ .+.+.++.+.+++
T Consensus 81 ~~~s~~~~~~l---~~~~~~v~~~~~~ 104 (183)
T d2cvoa1 81 HGTTQEIIKGL---PQELKIVDLSADF 104 (183)
T ss_dssp SSHHHHHHHTS---CSSCEEEECSSTT
T ss_pred cchHHHHHHHH---HhcCcccccchhh
Confidence 98887766433 2345556666665
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=87.06 E-value=0.72 Score=40.88 Aligned_cols=86 Identities=16% Similarity=0.172 Sum_probs=54.2
Q ss_pred ccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc-
Q 014834 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL- 185 (417)
Q Consensus 108 l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa- 185 (417)
|+| |++-|.|.+ -||.++|+.|.+. |.+|++.+|+.++..+.+++.+. ..++..+.
T Consensus 4 L~g-K~alVTGas~GIG~aia~~la~~------Ga~V~~~~r~~~~~~~~~~~~~~---------------~~~~~~~~~ 61 (251)
T d1zk4a1 4 LDG-KVAIITGGTLGIGLAIATKFVEE------GAKVMITGRHSDVGEKAAKSVGT---------------PDQIQFFQH 61 (251)
T ss_dssp TTT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHCC---------------TTTEEEEEC
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHhCC---------------CCcEEEEEc
Confidence 789 888888965 5999999999999 99998888764443333332211 11222222
Q ss_pred -cC-CchHHHHHHHHHhcCCCCcEEEEecCch
Q 014834 186 -IS-DAAQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 186 -vp-d~~~~~Vl~eI~~~lk~gaiLi~a~G~~ 215 (417)
+. ++...++++++...+.+=.+|+..+|+.
T Consensus 62 Dv~~~~~v~~~~~~~~~~~G~iDiLVnnAg~~ 93 (251)
T d1zk4a1 62 DSSDEDGWTKLFDATEKAFGPVSTLVNNAGIA 93 (251)
T ss_dssp CTTCHHHHHHHHHHHHHHHSSCCEEEECCCCC
T ss_pred cCCCHHHHHHHHHHHHHHhCCceEEEeccccc
Confidence 23 3444567777766553333677777763
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=87.02 E-value=1.2 Score=39.22 Aligned_cols=83 Identities=17% Similarity=0.178 Sum_probs=50.3
Q ss_pred CEEEEE-ccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc---c
Q 014834 112 NQIGVI-GWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL---I 186 (417)
Q Consensus 112 kkIgII-G~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa---v 186 (417)
|||++| |.+ -+|.++|+.|.+. |.+|++.+|+.++..+.+.+ +.+. ..+++.+. +
T Consensus 1 KKValITGas~GIG~aia~~la~~------Ga~V~~~~r~~~~l~~~~~~------------i~~~--g~~~~~~~~Dv~ 60 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKD------GFAVAIADYNDATAKAVASE------------INQA--GGHAVAVKVDVS 60 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHH------------HHHT--TCCEEEEECCTT
T ss_pred CCEEEEcCCccHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHH------------HHhc--CCcEEEEEeeCC
Confidence 688766 655 5999999999999 99998888764433222221 1110 11222222 2
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 187 pd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
.+....++++++...+.+=.+|+..+|+
T Consensus 61 ~~~~v~~~~~~~~~~~g~iDilVnnAG~ 88 (255)
T d1gega_ 61 DRDQVFAAVEQARKTLGGFDVIVNNAGV 88 (255)
T ss_dssp SHHHHHHHHHHHHHHTTCCCEEEECCCC
T ss_pred CHHHHHHHHHHHHHHhCCccEEEecccc
Confidence 3344456777777665433367888886
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=87.01 E-value=0.33 Score=38.47 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=29.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~ 149 (417)
++|.|||.|.+|--+|..|... |.+|.+..+.
T Consensus 23 ~~v~IiGgG~iG~E~A~~l~~~------g~~Vtlv~~~ 54 (117)
T d1onfa2 23 KKIGIVGSGYIAVELINVIKRL------GIDSYIFARG 54 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHTT------TCEEEEECSS
T ss_pred CEEEEECCchHHHHHHHHHHhc------cccceeeehh
Confidence 8999999999999999999988 9999888764
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=86.92 E-value=0.37 Score=41.81 Aligned_cols=37 Identities=22% Similarity=0.304 Sum_probs=32.5
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~ 149 (417)
..-.. ++|.|||.|.-|.+.|..|++. |++|++..+.
T Consensus 45 ~~~~~-k~VvIIGaGpAGl~aA~~l~~~------G~~v~l~E~~ 81 (233)
T d1djqa3 45 QTKNK-DSVLIVGAGPSGSEAARVLMES------GYTVHLTDTA 81 (233)
T ss_dssp CCSSC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred cccCC-ceEEEEcccHHHHHHHHHHHHh------ccceeeEeec
Confidence 44466 9999999999999999999999 9999988764
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.68 E-value=0.37 Score=42.71 Aligned_cols=36 Identities=17% Similarity=0.068 Sum_probs=29.9
Q ss_pred ccCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 014834 108 FNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (417)
Q Consensus 108 l~gmkkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~ 150 (417)
|+| |++-|.| .+.+|.++|+.|.+. |.+|++.+|+.
T Consensus 4 l~g-K~alITGas~GIG~aia~~la~~------G~~Vi~~~r~~ 40 (245)
T d2ag5a1 4 LDG-KVIILTAAAQGIGQAAALAFARE------GAKVIATDINE 40 (245)
T ss_dssp TTT-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEeCCH
Confidence 788 7766666 558999999999999 99998888763
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=86.68 E-value=1 Score=40.04 Aligned_cols=86 Identities=14% Similarity=0.048 Sum_probs=52.5
Q ss_pred ccCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc-
Q 014834 108 FNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL- 185 (417)
Q Consensus 108 l~gmkkIgIIG~G~-mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa- 185 (417)
|+| |++-|.|.+. +|.++|+.|.+. |.+|++..|+.++..+.+.+. .+. ..++..+.
T Consensus 6 Lkg-K~alVTGas~GIG~aiA~~la~~------Ga~V~~~~r~~~~l~~~~~~~------------~~~--~~~~~~~~~ 64 (259)
T d1xq1a_ 6 LKA-KTVLVTGGTKGIGHAIVEEFAGF------GAVIHTCARNEYELNECLSKW------------QKK--GFQVTGSVC 64 (259)
T ss_dssp CTT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHH------------HHT--TCCEEEEEC
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHH------------Hhc--CCceEEEec
Confidence 688 9999999774 999999999999 999988877644333322221 110 11222221
Q ss_pred -cC-CchHHHHHHHHHhcC-CCCcEEEEecCc
Q 014834 186 -IS-DAAQADNYEKIFSCM-KPNSILGLSHGF 214 (417)
Q Consensus 186 -vp-d~~~~~Vl~eI~~~l-k~gaiLi~a~G~ 214 (417)
+. +....++++++...+ .+=.+|+..+|+
T Consensus 65 Dv~~~~~v~~~~~~~~~~~~g~idilvnnAG~ 96 (259)
T d1xq1a_ 65 DASLRPEREKLMQTVSSMFGGKLDILINNLGA 96 (259)
T ss_dssp CTTSHHHHHHHHHHHHHHHTTCCSEEEEECCC
T ss_pred cCCCHHHHHHHHHHHHHHhCCCcccccccccc
Confidence 23 334456777765544 222367777776
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=86.56 E-value=0.4 Score=42.63 Aligned_cols=42 Identities=21% Similarity=0.203 Sum_probs=34.2
Q ss_pred hhccCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCChhhH
Q 014834 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF 154 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~-mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~ 154 (417)
+-|+| |++-|.|.+. +|.++|+.|.+. |.+|++..+++++..
T Consensus 2 ~~L~G-K~alITGas~GIG~aia~~la~~------G~~Vvi~~~~~~~~~ 44 (259)
T d1ja9a_ 2 KPLAG-KVALTTGAGRGIGRGIAIELGRR------GASVVVNYGSSSKAA 44 (259)
T ss_dssp CTTTT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEEESSCHHHH
T ss_pred CCCCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEcCCChHHH
Confidence 45889 9988988764 999999999999 999988777655443
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=86.44 E-value=0.069 Score=45.49 Aligned_cols=22 Identities=27% Similarity=0.358 Sum_probs=21.1
Q ss_pred CEEEEEcccchHHHHHHHHHhh
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDS 133 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s 133 (417)
+||.|||.|.+|.+.|..|.++
T Consensus 1 mkV~VIGaGi~GlstA~~L~~~ 22 (246)
T d1kifa1 1 MRVVVIGAGVIGLSTALCIHER 22 (246)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH
T ss_pred CEEEEECchHHHHHHHHHHHHC
Confidence 5899999999999999999998
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=86.42 E-value=0.46 Score=43.16 Aligned_cols=33 Identities=18% Similarity=0.343 Sum_probs=29.6
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEE
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV 145 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViV 145 (417)
..|+| ++|.|=|+|++|...|+.|.+. |..|+.
T Consensus 32 ~~l~g-~~v~IQGfGnVG~~~a~~L~e~------Gakvva 64 (255)
T d1bgva1 32 DTLVG-KTVALAGFGNVAWGAAKKLAEL------GAKAVT 64 (255)
T ss_dssp CCSTT-CEEEECCSSHHHHHHHHHHHHH------TCEEEE
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHc------CCeEEE
Confidence 46889 9999999999999999999999 987653
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=86.37 E-value=1.1 Score=36.88 Aligned_cols=89 Identities=12% Similarity=0.075 Sum_probs=54.1
Q ss_pred cCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec-CCCcCCHHhhc------CcCC
Q 014834 109 NGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (417)
Q Consensus 109 ~gmkkIgIIG~G~-mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~-~~~~~s~~Ea~------~~AD 180 (417)
.| ++|.|+|.|. +|...++-.+.. |.+|++..+++ ...+.+++.|.... |-.-.+..+-+ ...|
T Consensus 28 ~g-~~Vlv~ga~g~vG~~~iqlak~~------Ga~Vi~~~~s~-~k~~~~~~lGa~~vi~~~~~d~~~~v~~~t~g~g~d 99 (179)
T d1qora2 28 PD-EQFLFHAAAGGVGLIACQWAKAL------GAKLIGTVGTA-QKAQSALKAGAWQVINYREEDLVERLKEITGGKKVR 99 (179)
T ss_dssp TT-CEEEESSTTBHHHHHHHHHHHHH------TCEEEEEESSH-HHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEE
T ss_pred CC-CEEEEEccccccchHHHHHHHHh------CCeEeecccch-HHHHHHHhcCCeEEEECCCCCHHHHHHHHhCCCCeE
Confidence 46 8999996655 888888888887 99988776664 44677888885421 11112333322 2357
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEE
Q 014834 181 LVLLLISDAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 181 IViLavpd~~~~~Vl~eI~~~lk~gaiLi 209 (417)
+|+-++...... .....++++-.++
T Consensus 100 ~v~d~~g~~~~~----~~~~~l~~~G~~v 124 (179)
T d1qora2 100 VVYDSVGRDTWE----RSLDCLQRRGLMV 124 (179)
T ss_dssp EEEECSCGGGHH----HHHHTEEEEEEEE
T ss_pred EEEeCccHHHHH----HHHHHHhcCCeee
Confidence 888777654333 3334455544433
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=86.14 E-value=1 Score=39.95 Aligned_cols=86 Identities=16% Similarity=0.080 Sum_probs=53.4
Q ss_pred ccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc-
Q 014834 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL- 185 (417)
Q Consensus 108 l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa- 185 (417)
|+| |++-|-|.+ -+|.++|+.|.+. |.+|++.+|+.++..+.+.+ +.+. ..+++.+.
T Consensus 9 L~g-K~alITGas~GIG~aia~~la~~------Ga~V~~~~r~~~~~~~~~~~------------l~~~--g~~~~~~~~ 67 (255)
T d1fmca_ 9 LDG-KCAIITGAGAGIGKEIAITFATA------GASVVVSDINADAANHVVDE------------IQQL--GGQAFACRC 67 (255)
T ss_dssp CTT-CEEEETTTTSHHHHHHHHHHHTT------TCEEEEEESCHHHHHHHHHH------------HHHT--TCCEEEEEC
T ss_pred CCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHH------------HHHc--CCcEEEEEc
Confidence 788 888888865 6999999999999 99998888764332222221 1111 11233222
Q ss_pred --cCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 186 --ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 186 --vpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
+.+....++++++...+.+=.+|+..+|+
T Consensus 68 Dvs~~~~~~~~~~~~~~~~g~iDilvnnAG~ 98 (255)
T d1fmca_ 68 DITSEQELSALADFAISKLGKVDILVNNAGG 98 (255)
T ss_dssp CTTCHHHHHHHHHHHHHHHSSCCEEEECCCC
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCEeeeCCcC
Confidence 22344456777776655433468888886
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.82 E-value=0.42 Score=38.00 Aligned_cols=32 Identities=16% Similarity=0.102 Sum_probs=29.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~ 149 (417)
|+|.|||.|.+|--+|..|++. |.+|.+..+.
T Consensus 23 k~vvIvGgG~iG~E~A~~l~~~------G~~Vtlv~~~ 54 (125)
T d3grsa2 23 GRSVIVGAGYIAVEMAGILSAL------GSKTSLMIRH 54 (125)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred CEEEEEcCCccHHHHHHHHhcC------CcEEEEEeec
Confidence 7999999999999999999998 9999888775
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.76 E-value=0.39 Score=41.08 Aligned_cols=34 Identities=32% Similarity=0.330 Sum_probs=28.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~ 149 (417)
+||+|||.|.-|.+-|..|++. +.|++|.|+.+.
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~----~~~~~V~v~e~~ 35 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKH----HSRAHVDIYEKQ 35 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH----CSSCEEEEECSS
T ss_pred CeEEEECccHHHHHHHHHHHhc----CCCCeEEEEeCC
Confidence 6999999999999999999876 236689888665
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=85.49 E-value=0.47 Score=38.24 Aligned_cols=32 Identities=25% Similarity=0.211 Sum_probs=29.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~ 149 (417)
++|.|||.|.+|--+|..|++. |.+|.+..+.
T Consensus 36 k~v~VIGgG~iG~E~A~~l~~~------g~~Vtvie~~ 67 (133)
T d1q1ra2 36 NRLVVIGGGYIGLEVAATAIKA------NMHVTLLDTA 67 (133)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred CEEEEECCchHHHHHHHHHHhh------Ccceeeeeec
Confidence 8999999999999999999999 9998887664
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.40 E-value=0.46 Score=37.74 Aligned_cols=32 Identities=19% Similarity=0.122 Sum_probs=29.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~ 149 (417)
+++.|||.|.+|--+|..|.+. |.+|.+..+.
T Consensus 24 ~~~vIiG~G~ig~E~A~~l~~l------G~~Vtii~~~ 55 (122)
T d1v59a2 24 KRLTIIGGGIIGLEMGSVYSRL------GSKVTVVEFQ 55 (122)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred CeEEEECCCchHHHHHHHHHhh------CcceeEEEec
Confidence 7999999999999999999998 9999887664
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=85.35 E-value=0.57 Score=42.70 Aligned_cols=70 Identities=23% Similarity=0.226 Sum_probs=45.4
Q ss_pred CCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHH----H-cC-c--eecCCC---cCCHHhhcC
Q 014834 110 GINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----A-AG-F--TEENGT---LGDIYETIS 177 (417)
Q Consensus 110 gmkkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~----~-~G-~--~~~~~~---~~s~~Ea~~ 177 (417)
| |+|.|.| .|-+|..+++.|.+. |++|+...|+.++...... . .+ . .. .+. ..+..+++.
T Consensus 11 g-k~VlVTG~sGfIGs~l~~~Ll~~------G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~~~ 82 (342)
T d1y1pa1 11 G-SLVLVTGANGFVASHVVEQLLEH------GYKVRGTARSASKLANLQKRWDAKYPGRFETAV-VEDMLKQGAYDEVIK 82 (342)
T ss_dssp T-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEE-CSCTTSTTTTTTTTT
T ss_pred c-CEEEEECCCCHHHHHHHHHHHHC------cCEEEEEeCCchhHHHHHHhhhccccccccEEE-eccccchhhhhhhcc
Confidence 7 9999999 688999999999999 9999876775333221111 0 01 0 00 011 123557889
Q ss_pred cCCEEEEccC
Q 014834 178 GSDLVLLLIS 187 (417)
Q Consensus 178 ~ADIViLavp 187 (417)
++|.|+.+.-
T Consensus 83 ~~~~v~~~a~ 92 (342)
T d1y1pa1 83 GAAGVAHIAS 92 (342)
T ss_dssp TCSEEEECCC
T ss_pred cchhhhhhcc
Confidence 9999886544
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=85.13 E-value=0.53 Score=37.11 Aligned_cols=32 Identities=25% Similarity=0.189 Sum_probs=29.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~ 149 (417)
++|.|||.|.+|--+|..|++. |.+|.+..+.
T Consensus 23 ~~i~IiG~G~ig~E~A~~l~~~------G~~Vtiv~~~ 54 (119)
T d3lada2 23 GKLGVIGAGVIGLELGSVWARL------GAEVTVLEAM 54 (119)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT------TCEEEEEESS
T ss_pred CeEEEECCChHHHHHHHHHHHc------CCceEEEEee
Confidence 7999999999999999999998 9998888765
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=85.09 E-value=0.28 Score=43.27 Aligned_cols=36 Identities=19% Similarity=0.333 Sum_probs=30.7
Q ss_pred hhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEe
Q 014834 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~ 147 (417)
++-|+. .||.|||+|-.|..++.+|... |+ ++.+.+
T Consensus 25 Q~kL~~-~~VliiG~GglGs~va~~La~~------Gvg~i~lvD 61 (247)
T d1jw9b_ 25 QEALKD-SRVLIVGLGGLGCAASQYLASA------GVGNLTLLD 61 (247)
T ss_dssp HHHHHH-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEEC
T ss_pred HHHHhC-CCEEEECCCHHHHHHHHHHHHc------CCCeEEEEC
Confidence 456888 9999999999999999999999 87 555544
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=84.91 E-value=0.5 Score=42.11 Aligned_cols=87 Identities=18% Similarity=0.161 Sum_probs=52.6
Q ss_pred ccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHH---cCceecCCCcCCHHhhcCcCCEEE
Q 014834 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISGSDLVL 183 (417)
Q Consensus 108 l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~---~G~~~~~~~~~s~~Ea~~~ADIVi 183 (417)
|+| |.+-|.|. +-+|.++|+.|.+. |.+|++.+|+.++..+.+.+ .|.. ..++..
T Consensus 3 l~g-KvalVTGas~GIG~aia~~la~~------Ga~V~~~~r~~~~l~~~~~~l~~~~~~--------------~~~~~~ 61 (264)
T d1spxa_ 3 FAE-KVAIITGSSNGIGRATAVLFARE------GAKVTITGRHAERLEETRQQILAAGVS--------------EQNVNS 61 (264)
T ss_dssp TTT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTTCC--------------GGGEEE
T ss_pred CCC-CEEEEeCcCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHhcCCC--------------cCceEE
Confidence 678 76667675 58999999999999 99998888864433222222 1211 112222
Q ss_pred Ec---cCCchHHHHHHHHHhcCCCCcEEEEecCch
Q 014834 184 LL---ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (417)
Q Consensus 184 La---vpd~~~~~Vl~eI~~~lk~gaiLi~a~G~~ 215 (417)
+. +.+....++++++.....+=.+|+..+|..
T Consensus 62 ~~~Dvt~~~~v~~~~~~~~~~~g~iDilvnnAG~~ 96 (264)
T d1spxa_ 62 VVADVTTDAGQDEILSTTLGKFGKLDILVNNAGAA 96 (264)
T ss_dssp EECCTTSHHHHHHHHHHHHHHHSCCCEEEECCC--
T ss_pred EEccCCCHHHHHHHHHHHHHHhCCCCEeecccccc
Confidence 22 233444567777766554444788888863
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=84.86 E-value=0.47 Score=40.55 Aligned_cols=32 Identities=25% Similarity=0.182 Sum_probs=28.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK 149 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~ 149 (417)
.+|.|||.|.-|.+.|..|++. |+ +|.|..+.
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~------Gi~~V~V~Er~ 34 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQA------GIGKVTLLESS 34 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCSEEEEEESS
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCCeEEEEeCC
Confidence 4899999999999999999999 96 88887765
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.40 E-value=0.47 Score=46.09 Aligned_cols=86 Identities=12% Similarity=-0.007 Sum_probs=54.3
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecC--C-h----------------hhH---HHHHHc--
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK--G-S----------------RSF---AEARAA-- 160 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~--~-s----------------~s~---~~A~~~-- 160 (417)
..|++ .||.|||+|-+|..++++|..+ |+ ++.+.+.. + + +.. +..++.
T Consensus 33 ~~l~~-~kVlvvG~GglG~ei~k~L~~~------Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np 105 (426)
T d1yovb1 33 FLLDT-CKVLVIGAGGLGCELLKNLALS------GFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVP 105 (426)
T ss_dssp HHHHH-CCEEEECSSTTHHHHHHHHHTT------TCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHST
T ss_pred HHHhc-CeEEEECCCHHHHHHHHHHHHc------CCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCC
Confidence 44678 8999999999999999999998 76 45554431 0 0 111 111111
Q ss_pred C--ceecCCCc-CCHHhhcCcCCEEEEccCCchHHHHHHHH
Q 014834 161 G--FTEENGTL-GDIYETISGSDLVLLLISDAAQADNYEKI 198 (417)
Q Consensus 161 G--~~~~~~~~-~s~~Ea~~~ADIViLavpd~~~~~Vl~eI 198 (417)
. +....... ....+.+++.|+|+.++-+......+.+.
T Consensus 106 ~v~i~~~~~~i~~~~~~~~~~~DlVi~~~Dn~~aR~~in~~ 146 (426)
T d1yovb1 106 NCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGM 146 (426)
T ss_dssp TCCCEEECSCGGGBCHHHHTTCSEEEECCSCHHHHHHHHHH
T ss_pred CCceEeeeccccchHHHHHHhcchheeccCcHHHHHHHHHH
Confidence 1 12111111 12356789999999998887777777654
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=84.21 E-value=0.36 Score=43.75 Aligned_cols=33 Identities=21% Similarity=0.235 Sum_probs=29.8
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 014834 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 111 mkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~ 149 (417)
|..|.|||.|.-|.+.|..|.+. |.+|.|..++
T Consensus 1 M~dv~IIGaG~sGl~~A~~L~~~------g~~V~iiEk~ 33 (298)
T d1i8ta1 1 MYDYIIVGSGLFGAVCANELKKL------NKKVLVIEKR 33 (298)
T ss_dssp CEEEEEECCSHHHHHHHHHHGGG------TCCEEEECSS
T ss_pred CccEEEECCcHHHHHHHHHHHhC------CCcEEEEECC
Confidence 57899999999999999999998 9999888664
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=84.10 E-value=0.48 Score=42.27 Aligned_cols=87 Identities=16% Similarity=0.140 Sum_probs=52.4
Q ss_pred ccCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc-
Q 014834 108 FNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL- 185 (417)
Q Consensus 108 l~gmkkIgIIG~G~-mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa- 185 (417)
|+| |+|-|.|... +|.++|+.|.+. |.+|++..|+.++..+.+ + ......+..+.+..
T Consensus 3 l~g-K~vlITGgs~GIG~~~A~~la~~------G~~vii~~r~~~~~~~~~-~------------~~~~~~~~~~~~~~~ 62 (254)
T d1sbya1 3 LTN-KNVIFVAALGGIGLDTSRELVKR------NLKNFVILDRVENPTALA-E------------LKAINPKVNITFHTY 62 (254)
T ss_dssp CTT-CEEEEETTTSHHHHHHHHHHHHT------CCSEEEEEESSCCHHHHH-H------------HHHHCTTSEEEEEEC
T ss_pred CCC-CEEEEecCCCHHHHHHHHHHHHC------CCEEEEEECCcccHHHHH-H------------HHhhCCCCCEEEEEe
Confidence 789 9999999874 999999999999 998777666544322221 1 11111222333322
Q ss_pred -cC-C-chHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 186 -IS-D-AAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 186 -vp-d-~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
+. + ....++++++.....+=.+|+..+|.
T Consensus 63 d~~~~~~~~~~~~~~~~~~~g~iDilvnnAG~ 94 (254)
T d1sbya1 63 DVTVPVAESKKLLKKIFDQLKTVDILINGAGI 94 (254)
T ss_dssp CTTSCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCCEEEeCCCC
Confidence 21 2 33456777776655332367777774
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=84.10 E-value=0.56 Score=36.98 Aligned_cols=32 Identities=31% Similarity=0.278 Sum_probs=29.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~ 149 (417)
++|.|||.|.+|--+|..|++. |.+|.+..+.
T Consensus 33 ~~vvIiGgG~iG~E~A~~l~~~------g~~Vtlv~~~ 64 (122)
T d1xhca2 33 GEAIIIGGGFIGLELAGNLAEA------GYHVKLIHRG 64 (122)
T ss_dssp SEEEEEECSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred CcEEEECCcHHHHHHHHHhhcc------cceEEEEecc
Confidence 8999999999999999999999 9998887664
|
| >d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Escherichia coli [TaxId: 562]
Probab=83.93 E-value=0.97 Score=37.35 Aligned_cols=70 Identities=13% Similarity=0.089 Sum_probs=46.5
Q ss_pred ccCCCEEEEEcc---cchHHHHHHHHHhhhhhhcCCc-EEEEEecC----ChhhHHHHHHcCceecCCCcCCHHhhcCcC
Q 014834 108 FNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK----GSRSFAEARAAGFTEENGTLGDIYETISGS 179 (417)
Q Consensus 108 l~gmkkIgIIG~---G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~----~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~A 179 (417)
|+| .||++||= ++...+++..+... |. .+.+.... +....+.++..|... ..+.+++++++++
T Consensus 2 l~g-l~i~~vGD~~nsrv~~Sli~~l~~~------~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~--~~~~d~~~a~~~a 72 (160)
T d1ekxa2 2 LDN-LHVAMVGDLKYGRTVHSLTQALAKF------DGNRFYFIAPDALAMPQYILDMLDEKGIAW--SLHSSIEEVMAEV 72 (160)
T ss_dssp SSS-CEEEEESCTTTCHHHHHHHHHHTTS------SSCEEEEECCGGGCCCHHHHHHHHHTTCCE--EECSCSTTTGGGC
T ss_pred CCC-CEEEEEcCCCccHHHHHHHHHHHHc------CCCeEEeeccchhhhhHHHHHHHhhhcccc--ccccCHHHHhCcC
Confidence 578 89999996 45899999888776 64 44444322 222234555666532 1256889999999
Q ss_pred CEEEEcc
Q 014834 180 DLVLLLI 186 (417)
Q Consensus 180 DIViLav 186 (417)
|+|....
T Consensus 73 Dvvy~~~ 79 (160)
T d1ekxa2 73 DILYMTR 79 (160)
T ss_dssp SEEEECC
T ss_pred ceEEeec
Confidence 9998643
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=83.86 E-value=0.59 Score=36.39 Aligned_cols=32 Identities=22% Similarity=0.190 Sum_probs=29.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~ 149 (417)
+++.|||.|..|--+|..|++. |.+|.+..+.
T Consensus 22 ~~vvIiGgG~~G~E~A~~l~~~------g~~Vtlve~~ 53 (115)
T d1lvla2 22 QHLVVVGGGYIGLELGIAYRKL------GAQVSVVEAR 53 (115)
T ss_dssp SEEEEECCSHHHHHHHHHHHHH------TCEEEEECSS
T ss_pred CeEEEECCCHHHHHHHHHHhhc------ccceEEEeee
Confidence 7999999999999999999999 9998877654
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=83.69 E-value=2.3 Score=37.36 Aligned_cols=86 Identities=19% Similarity=0.033 Sum_probs=51.1
Q ss_pred ccCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCEEEEc-
Q 014834 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL- 185 (417)
Q Consensus 108 l~gmkkIgIIG~G-~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADIViLa- 185 (417)
|+| |.+-|.|.+ -+|.++|+.|.+. |.+|++.+|+.++..+.+.+. ++. ..++..+.
T Consensus 8 len-KvalITGas~GIG~a~a~~la~~------Ga~V~~~~r~~~~l~~~~~~l------------~~~--g~~~~~~~~ 66 (251)
T d2c07a1 8 GEN-KVALVTGAGRGIGREIAKMLAKS------VSHVICISRTQKSCDSVVDEI------------KSF--GYESSGYAG 66 (251)
T ss_dssp CSS-CEEEEESTTSHHHHHHHHHHTTT------SSEEEEEESSHHHHHHHHHHH------------HTT--TCCEEEEEC
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEECCHHHHHHHHHHH------------Hhc--CCcEEEEEc
Confidence 456 666676864 6999999999999 999988887643322222221 110 11222222
Q ss_pred --cCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 014834 186 --ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (417)
Q Consensus 186 --vpd~~~~~Vl~eI~~~lk~gaiLi~a~G~ 214 (417)
+.+....++++++.....+=.+|+..+|.
T Consensus 67 Dvt~~~~v~~~~~~~~~~~g~iDilvnnag~ 97 (251)
T d2c07a1 67 DVSKKEEISEVINKILTEHKNVDILVNNAGI 97 (251)
T ss_dssp CTTCHHHHHHHHHHHHHHCSCCCEEEECCCC
T ss_pred cCCCHHHHHHHHHHHHHhcCCceeeeecccc
Confidence 23344556888777665433367777775
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.51 E-value=0.98 Score=44.86 Aligned_cols=36 Identities=17% Similarity=0.169 Sum_probs=30.9
Q ss_pred hhhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEe
Q 014834 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (417)
Q Consensus 105 ~~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~ 147 (417)
++.|+. .+|.|||+|..|.-+++||... |+ .+.+.+
T Consensus 20 Q~~L~~-s~VlvvG~gglG~Ei~knLvl~------GVg~itivD 56 (529)
T d1yova1 20 QEALES-AHVCLINATATGTEILKNLVLP------GIGSFTIID 56 (529)
T ss_dssp HHHHHH-CEEEECCCSHHHHHHHHHHHTT------TCSEEEEEC
T ss_pred HHHHhC-CCEEEECCCHHHHHHHHHHHHh------cCCEEEEEc
Confidence 577888 9999999999999999999998 87 565554
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.30 E-value=0.49 Score=37.62 Aligned_cols=32 Identities=22% Similarity=0.098 Sum_probs=28.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~ 149 (417)
++|.|||.|.+|--+|..|++. |.+|.+..+.
T Consensus 21 ~~vvIIGgG~iG~E~A~~l~~l------G~~Vtii~~~ 52 (122)
T d1h6va2 21 GKTLVVGASYVALECAGFLAGI------GLDVTVMVRS 52 (122)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT------TCCEEEEESS
T ss_pred CeEEEECCCccHHHHHHHHhhc------CCeEEEEEec
Confidence 6899999999999999999998 9988877653
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=81.87 E-value=3.6 Score=33.94 Aligned_cols=93 Identities=18% Similarity=0.177 Sum_probs=61.2
Q ss_pred ccCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceec-C-CCcCCHHhh-----cCcC
Q 014834 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-N-GTLGDIYET-----ISGS 179 (417)
Q Consensus 108 l~gmkkIgIIG~-G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~-~-~~~~s~~Ea-----~~~A 179 (417)
-+| ++|-|.|. |..|.+.++-.+.. |.+|+...++. ...+.+++.|.... + ......+++ -...
T Consensus 28 ~~G-~~VlV~ga~ggvG~~aiqlak~~------Ga~vi~~~~~~-~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gv 99 (182)
T d1v3va2 28 KGG-ETVLVSAAAGAVGSVVGQIAKLK------GCKVVGAAGSD-EKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGY 99 (182)
T ss_dssp CSS-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEESSH-HHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCE
T ss_pred CCC-CEEEEEeCCCchhHHHHHHHHcc------CCEEEEeCCCH-HHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCC
Confidence 357 89999998 55888888877777 99987766653 44677888885421 1 111112222 2458
Q ss_pred CEEEEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 014834 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (417)
Q Consensus 180 DIViLavpd~~~~~Vl~eI~~~lk~gaiLi~a~ 212 (417)
|+|+-++.. +.+++..+.++++-.++..+
T Consensus 100 d~v~D~vG~----~~~~~~~~~l~~~G~~v~~G 128 (182)
T d1v3va2 100 DCYFDNVGG----EFLNTVLSQMKDFGKIAICG 128 (182)
T ss_dssp EEEEESSCH----HHHHHHGGGEEEEEEEEECC
T ss_pred ceeEEecCc----hhhhhhhhhccCCCeEEeec
Confidence 999999863 35666777788877666543
|
| >d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Probab=81.52 E-value=3.7 Score=36.24 Aligned_cols=75 Identities=21% Similarity=0.240 Sum_probs=47.5
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCC----hh--------hHHHHHHcCceecCCCcCCH
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG----SR--------SFAEARAAGFTEENGTLGDI 172 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~-~ViVg~r~~----s~--------s~~~A~~~G~~~~~~~~~s~ 172 (417)
+.|+. .||.|.|.|+-|-.+++.|++. +. +++..++++ ++ ....++.... .....++
T Consensus 22 ~~l~d-~riv~~GAGsAg~gia~~l~~~------~~~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~~~---~~~~~~l 91 (222)
T d1vl6a1 22 KKIEE-VKVVVNGIGAAGYNIVKFLLDL------GVKNVVAVDRKGILNENDPETCLNEYHLEIARITNP---ERLSGDL 91 (222)
T ss_dssp CCTTT-CEEEEECCSHHHHHHHHHHHHH------TCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCT---TCCCSCH
T ss_pred CChhh-cEEEEEChHHHHHHHHHHHHHh------cccceEeecceeEEEcCcccccccHHHHHHHhhhcc---hhhhcch
Confidence 44666 8999999999999999999988 76 555555531 10 1122221111 1124567
Q ss_pred HhhcCcCCEEEEccCCch
Q 014834 173 YETISGSDLVLLLISDAA 190 (417)
Q Consensus 173 ~Ea~~~ADIViLavpd~~ 190 (417)
.++++.+|+++.+.-...
T Consensus 92 ~~~l~g~~~~~g~~~~~~ 109 (222)
T d1vl6a1 92 ETALEGADFFIGVSRGNI 109 (222)
T ss_dssp HHHHTTCSEEEECSCSSC
T ss_pred HhhccCcceecccccccc
Confidence 788888887777665443
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=81.32 E-value=1.4 Score=35.61 Aligned_cols=94 Identities=10% Similarity=-0.009 Sum_probs=56.1
Q ss_pred hhccCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcC----cee---------------cC
Q 014834 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG----FTE---------------EN 166 (417)
Q Consensus 106 ~~l~gmkkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G----~~~---------------~~ 166 (417)
.--+| .+|-.||||.-- .+..|.+. |++|+ |.+..+...+.|++.. ... ..
T Consensus 17 ~~~~~-~rvLd~GCG~G~--~a~~la~~------G~~V~-gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (201)
T d1pjza_ 17 NVVPG-ARVLVPLCGKSQ--DMSWLSGQ------GYHVV-GAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWC 86 (201)
T ss_dssp CCCTT-CEEEETTTCCSH--HHHHHHHH------CCEEE-EEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEE
T ss_pred CCCCC-CEEEEecCcCCH--HHHHHHHc------CCceE-eecccHHHHHHHHHHhccccchhhhhhhhhccccccceec
Confidence 34467 899999999854 45567777 99875 6665566666666521 100 00
Q ss_pred CCcCCH-HhhcCcCCEEEE-----ccCCchHHHHHHHHHhcCCCCcEEE
Q 014834 167 GTLGDI-YETISGSDLVLL-----LISDAAQADNYEKIFSCMKPNSILG 209 (417)
Q Consensus 167 ~~~~s~-~Ea~~~ADIViL-----avpd~~~~~Vl~eI~~~lk~gaiLi 209 (417)
+...+. .+.....|+|+. ++++......++.+...||||-.+.
T Consensus 87 ~d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~ 135 (201)
T d1pjza_ 87 GDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGL 135 (201)
T ss_dssp ECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEE
T ss_pred ccccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEE
Confidence 001111 112234576654 3455555678888999999988644
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=81.25 E-value=0.76 Score=41.38 Aligned_cols=38 Identities=21% Similarity=0.135 Sum_probs=33.2
Q ss_pred hccCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCh
Q 014834 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (417)
Q Consensus 107 ~l~gmkkIgIIG-~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s 151 (417)
.++| |||-|.| .|-+|..+++.|.+. |++|++.+|..+
T Consensus 5 ~~~~-KkILVTG~tGfIGs~lv~~Ll~~------g~~V~~~~r~~~ 43 (356)
T d1rkxa_ 5 FWQG-KRVFVTGHTGFKGGWLSLWLQTM------GATVKGYSLTAP 43 (356)
T ss_dssp HHTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSCS
T ss_pred hhCC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEECCCC
Confidence 4788 9999999 789999999999999 999987777543
|
| >d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain species: Streptococcus pyogenes [TaxId: 1314]
Probab=80.83 E-value=0.88 Score=35.57 Aligned_cols=67 Identities=12% Similarity=0.067 Sum_probs=46.4
Q ss_pred CEEEEEcc----------cchHHHHHHHHHhhhhhhcCCcEEEEEecCChhhHHHHHHcCceecCCCcCCHHhhcCcCCE
Q 014834 112 NQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDL 181 (417)
Q Consensus 112 kkIgIIG~----------G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~~s~s~~~A~~~G~~~~~~~~~s~~Ea~~~ADI 181 (417)
|+|||.|+ .+-.--+...|... |.+|.+++..-.. .+ ...+... ..+++++.+.+|+
T Consensus 16 k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~------g~~v~iyDP~v~~-~~--~~~~~~~----~~~l~~~~~~sDi 82 (108)
T d1dlja3 16 KVVGVYRLIMKSNSDNFRESAIKDVIDILKSK------DIKIIIYEPMLNK-LE--SEDQSVL----VNDLENFKKQANI 82 (108)
T ss_dssp CEEEEECCCSSTTCSCCTTCHHHHHHHHHHTS------SCEEEEECTTCSC-CC--TTCCSEE----CCCHHHHHHHCSE
T ss_pred CEEEEEEEEECCCCcchhhhhHHHHHHHHhcc------ccceeeecCCcCh-hH--hccCCEE----EeCHHHHHhhCCE
Confidence 68999998 45566778888877 9998877553222 11 1234543 5689999999998
Q ss_pred EEEccCCchH
Q 014834 182 VLLLISDAAQ 191 (417)
Q Consensus 182 ViLavpd~~~ 191 (417)
|++...+...
T Consensus 83 II~~~~~~~~ 92 (108)
T d1dlja3 83 IVTNRYDNEL 92 (108)
T ss_dssp EECSSCCGGG
T ss_pred EEEcCCchHH
Confidence 8877666544
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=80.41 E-value=0.92 Score=37.86 Aligned_cols=34 Identities=15% Similarity=0.142 Sum_probs=27.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 014834 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (417)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr~s~~~~~~G~~ViVg~r~ 149 (417)
|||.|||.|..|-..|..|++. +.+.+|++..+.
T Consensus 1 ~KVvIIGgG~~G~e~A~~l~~~----~~~~~V~v~~~~ 34 (198)
T d1nhpa1 1 MKVIVLGSSHGGYEAVEELLNL----HPDAEIQWYEKG 34 (198)
T ss_dssp CEEEEECSSHHHHHHHHHHHHH----CTTSEEEEEESS
T ss_pred CEEEEECCcHHHHHHHHHHHhc----CCCCeEEEEeCC
Confidence 6899999999999999999986 113467776654
|