Citrus Sinensis ID: 014851

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------
MTWVSLLFLIVPSILLLPHSLSQAESDTLKQGQQLHDWDELVSAEGVFKLGFFSPGSKTVDIGVIAPRYIGIWFNKIPFYPLWVANPNNPVPDSSGVLRMDTDGILKFAYKGGSRIAVSSNRAKKANSETNITATLLDSGNLLVRQIGADGIAGPILWQSFDYPSNMLLPEMKLGINLKTGHEWYLSSWLSEQLPSPGAFRLGLNPNGSRELMVWRRGEVYWRSGEWKNGKFELAPELTEGTFTKQLDAYQFRFVTNENERYFSYSKRSNFILSRWLLNDLGQIEQFTRDTSGWIWETTSPCNTNYTMNATGVCLNEKPSNCRNGSEFFAPRKGCMNVSFTYMNIDDNAGLALSDCHAKCWTNCSCSAYSSVFDNGTGCEFWSREVQFIPDEGFGREIYLLTYDQSINGTSSYHRVP
cccHHHHHHHHHHHHHHccccccccccccccccccccccEEEccccEEEEEEcccccccccccccccEEEEEEcccccccEEEEcccccccccccEEEEEcccccEEEEEccccEEEEEcccccccccccccEEEEEccccEEEEEcccccccccEEEEcccccccccccccEEccEEccccEEEEEEEccccccccccEEEEEEcccccEEEEEEccEEEEEEccccccEEEEcccccccccccccccEEEEEEEcccEEEEEEEEccccEEEEEEEcccccEEEEEEcccccEEEEcccccccccccccccccccccccccccccccccccccEEcccccccccccccccHHHHHHHHHHccccEEEEccccccccEEEEccccccccccccccEEEEEEEcccccccccccccc
ccHHHEEEEEHHHHHHHccccccccccccccccEcccccEEEccccEEEEEEEccccccccccccccEEEEEEEEEccccEEEEEccccccccccEEEEEccccEEEEEcccccccEEEEcccccccccccHHHEEcccccEEEEEcccccccccEEEEEcccccccccccccccccccccccHHEEccccccccccccEEEEEccccccEEEEEcccEEEEEccccccEEEccccccccccccccccEEEEEEEEcccEEEEEEEEEcccEEEEEEEccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccEEccccccEccccccccHHHHHHHHHHccccEEEEEEcccccEEEEEcccHHHHHHHcccccEEEEEEHHHHHccccccccc
MTWVSLLFLIVPsilllphslsqaesdtlkqgqqlhdwdelvsaegvfklgffspgsktvdigviapryigiwfnkipfyplwvanpnnpvpdssgvlrmdTDGILKFAYKGGSRIAVSSNrakkansetnITATLLDSGNLLVRQIgadgiagpilwqsfdypsnmllpemklginlktgHEWYLSSWlseqlpspgafrlglnpngsreLMVWRRGEVywrsgewkngkfelapeltegtftkqlDAYQFRFVTNENeryfsyskrsnfILSRWLLNdlgqieqftrdtsgwiwettspcntnytmnatgvclnekpsncrngseffaprkgcmnvsftymniddnaglalsdchakcwtncscsayssvfdngtgcefwsrevqfipdegfgreIYLLTydqsingtssyhrvp
MTWVSLLFLIVPSILLLPHSLSQAESDTLKQGQQLHDWDELVSAEGVFKLGffspgsktvdIGVIAPRYIGIWFNKIPFYPLWVANPNNPVPDSSGVLRMDTDGILKFAYKGgsriavssnrakkansetnitatlldsGNLLVRQIGADGIAGPILWQSFDYPSNMLLPEMKLGINLKTGHEWYLSSWLSEQLPSPGAFRLGLNPNGSRELMVWRRGEVYWRSGEWKNGKFELAPELTEGTFTKQLDAYQFRFVTNENERYFSYSKRSNFILSRWLLNDLGQIEQFTRDTSGWIWETTSPCNTNYTMNATGVCLNEKPSNCRNGSEFFAPRKGCMNVSFTYMNIDDNAGLALSDCHAKCWTNCSCSAYSSVFDNGTGCEFWSREVQFIPDEGFGREIYLLtydqsingtssyhrvp
MTWvsllflivpsilllpHSLSQAESDTLKQGQQLHDWDELVSAEGVFKLGFFSPGSKTVDIGVIAPRYIGIWFNKIPFYPLWVANPNNPVPDSSGVLRMDTDGILKFAYKGGSRIAVSSNRAKKANSETNITATLLDSGNLLVRQIGADGIAGPILWQSFDYPSNMLLPEMKLGINLKTGHEWYLSSWLSEQLPSPGAFRLGLNPNGSRELMVWRRGEVYWRSGEWKNGKFELAPELTEGTFTKQLDAYQFRFVTNENERYFSYSKRSNFILSRWLLNDLGQIEQFTRDTSGWIWETTSPCNTNYTMNATGVCLNEKPSNCRNGSEFFAPRKGCMNVSFTYMNIDDNAGLALSDCHAKCWTNCSCSAYSSVFDNGTGCEFWSREVQFIPDEGFGREIYLLTYDQSINGTSSYHRVP
**WVSLLFLIVPSILLLPHSL***********QQLHDWDELVSAEGVFKLGFFSPGSKTVDIGVIAPRYIGIWFNKIPFYPLWVANPNN******GVLRMDTDGILKFAYKGGSRIA*************NITATLLDSGNLLVRQIGADGIAGPILWQSFDYPSNMLLPEMKLGINLKTGHEWYLSSWLSEQLPSPGAFRLGLNPNGSRELMVWRRGEVYWRSGEWKNGKFELAPELTEGTFTKQLDAYQFRFVTNENERYFSYSKRSNFILSRWLLNDLGQIEQFTRDTSGWIWETTSPCNTNYTMNATGVCLNEKPSNCRNGSEFFAPRKGCMNVSFTYMNIDDNAGLALSDCHAKCWTNCSCSAYSSVFDNGTGCEFWSREVQFIPDEGFGREIYLLTYDQSI**********
*TWVSLLFLIVPSILLLPHSLSQAESDTLKQGQQLHDWDELVSAEGVFKLGFFSPGSKTVDIGVIAPRYIGIWFNKIPFYPLWVANPNNPVPDSSGVLRMDTDGILKFAYKGGSRIAVSSNRAK****ETNITATLLDSGNLLVRQIGADGIAGPILWQSFDYPSNMLLPEMKLGINLKTGHEWYLSSWLSEQLPSPGAFRLGLNPNGSRELMVWRRGEVYWRSGEWKNGKFELAPELTEGTFTKQLDAYQFRFVTNENERYFSYSKRSNFILSRWLLNDLGQIEQFTRDTSGWIWETTSPCNTNYTMNATGVCLNEKPSNCRNGSEFFAP*KGCMNVSFTYMNIDDNAGLALSDCHAKCWTNCSCSAYSSVFDNGTGCEFWSREVQFIPDEGFGREIYLLT***************
MTWVSLLFLIVPSILLLPHSLSQ**********QLHDWDELVSAEGVFKLGFFSPGSKTVDIGVIAPRYIGIWFNKIPFYPLWVANPNNPVPDSSGVLRMDTDGILKFAYKGGSRIAV*********SETNITATLLDSGNLLVRQIGADGIAGPILWQSFDYPSNMLLPEMKLGINLKTGHEWYLSSWLSEQLPSPGAFRLGLNPNGSRELMVWRRGEVYWRSGEWKNGKFELAPELTEGTFTKQLDAYQFRFVTNENERYFSYSKRSNFILSRWLLNDLGQIEQFTRDTSGWIWETTSPCNTNYTMNATGVCLNEKPSNCRNGSEFFAPRKGCMNVSFTYMNIDDNAGLALSDCHAKCWTNCSCSAYSSVFDNGTGCEFWSREVQFIPDEGFGREIYLLTYDQSINGTSSYHRVP
*TWVSLLFLIVPSILLLPHSLSQAESDTLKQGQQLHDWDELVSAEGVFKLGFFSPGSKTVDIGVIAPRYIGIWFNKIPFYPLWVANPNNPVPDSSGVLRMDTDGILKFAYKGGSRIAVSSNRAKKANSETNITATLLDSGNLLVRQIGADGIAGPILWQSFDYPSNMLLPEMKLGINLKTGHEWYLSSWLSEQLPSPGAFRLGLNPNGSRELMVWRRGEVYWRSGEWKNGKFELAPELTEGTFTKQLDAYQFRFVTNENERYFSYSKRSNFILSRWLLNDLGQIEQFTRDTSGWIWETTSPCNTNYTMNATGVCLNEKPSNCRNGSEFFAPRKGCMNVSFTYMNIDDNAGLALSDCHAKCWTNCSCSAYSSVFDNGTGCEFWSREVQFIPDEGFGREIYLLTYDQSING********
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTWVSLLFLIVPSILLLPHSLSQAESDTLKQGQQLHDWDELVSAEGVFKLGFFSPGSKTVDIGVIAPRYIGIWFNKIPFYPLWVANPNNPVPDSSGVLRMDTDGILKFAYKGGSRIAVSSNRAKKANSETNITATLLDSGNLLVRQIGADGIAGPILWQSFDYPSNMLLPEMKLGINLKTGHEWYLSSWLSEQLPSPGAFRLGLNPNGSRELMVWRRGEVYWRSGEWKNGKFELAPELTEGTFTKQLDAYQFRFVTNENERYFSYSKRSNFILSRWLLNDLGQIEQFTRDTSGWIWETTSPCNTNYTMNATGVCLNEKPSNCRNGSEFFAPRKGCMNVSFTYMNIDDNAGLALSDCHAKCWTNCSCSAYSSVFDNGTGCEFWSREVQFIPDEGFGREIYLLTYDQSINGTSSYHRVP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query417 2.2.26 [Sep-21-2011]
Q9LW83 850 G-type lectin S-receptor- no no 0.856 0.42 0.334 4e-49
O64793 818 G-type lectin S-receptor- no no 0.779 0.397 0.362 6e-47
O81832 783 G-type lectin S-receptor- no no 0.920 0.490 0.301 8e-40
Q9LPZ9 830 G-type lectin S-receptor- no no 0.812 0.408 0.302 3e-37
O81833 815 G-type lectin S-receptor- no no 0.834 0.426 0.319 5e-37
O81906 849 G-type lectin S-receptor- no no 0.877 0.431 0.295 2e-36
O64477 828 G-type lectin S-receptor- no no 0.856 0.431 0.285 2e-35
P17840435 S-locus-specific glycopro N/A no 0.865 0.829 0.288 6e-35
Q39086 843 Receptor-like serine/thre no no 0.800 0.396 0.285 3e-34
O81905 850 Receptor-like serine/thre no no 0.836 0.410 0.280 6e-34
>sp|Q9LW83|CE101_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase CES101 OS=Arabidopsis thaliana GN=CES101 PE=2 SV=2 Back     alignment and function desciption
 Score =  196 bits (497), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 141/421 (33%), Positives = 202/421 (47%), Gaps = 64/421 (15%)

Query: 3   WVSLLFLIVPSILLLPHSLSQAESDTLKQGQQLHDWDELVSAEGVFKLGFFSPGSKTVDI 62
           W + +FL + +  L     S  ++DTL QGQ L D  ELVSA  +FKL FF+  + +   
Sbjct: 2   WSNCIFLTLFTFYLFLGQ-SCCQTDTLLQGQYLKDGQELVSAFNIFKLKFFNFENSS--- 57

Query: 63  GVIAPRYIGIWFNKIPFY---PLWVANPNNPVPDSSGVLRMDTDGILKFAYKGGSRIAVS 119
                 Y+GIW+N   FY    +W+AN NNPV   SG L +D+ G L+      S + +S
Sbjct: 58  ----NWYLGIWYNN--FYLSGAVWIANRNNPVLGRSGSLTVDSLGRLRILRGASSLLELS 111

Query: 120 SNRAKKANSETNITATLLDSGNLLVRQIGADGIAGPILWQSFDYPSNMLLPEMKLGINLK 179
           S       +  N T  LLDSGNL ++++ +DG     LWQSFDYP++ LLP MKLG N+K
Sbjct: 112 S-----TETTGNTTLKLLDSGNLQLQEMDSDGSMKRTLWQSFDYPTDTLLPGMKLGFNVK 166

Query: 180 TGHEWYLSSWLSEQLPSPGAFRLGLNPNGSRELMVWRRGEVYWRSGEWKNGKFELAPELT 239
           TG  W L+SWL + LP+ G+F  G++ N +  L +   G VYW SG W  G F L    T
Sbjct: 167 TGKRWELTSWLGDTLPASGSFVFGMDDNITNRLTILWLGNVYWASGLWFKGGFSLEKLNT 226

Query: 240 EGTFTKQLDAYQFRFVTNENERYFSYSKRSNF---ILSRWLLNDLGQIEQFTRDTSGWIW 296
            G        + F FV+ E+E YF YS   N+   +  R  ++  G +++   D    + 
Sbjct: 227 NG--------FIFSFVSTESEHYFMYSGDENYGGPLFPRIRIDQQGSLQKINLDG---VK 275

Query: 297 ETTSPCNTNYTMNATGVCLNEKPSNCRN---------------GSEFFAPRKG-----CM 336
           +      + +       C  +   NC                 G  +   RK      C 
Sbjct: 276 KHVHCSPSVFGEELEYGCYQQNFRNCVPARYKEVTGSWDCSPFGFGYTYTRKTYDLSYCS 335

Query: 337 NVSFTYMN----------IDDNAGLALS--DCHAKCWTNCSCSAYSSVFDNGTGCEFWSR 384
              +T+            + +  G  LS  DC+ KC  NCSC AY+S   +GTGCE W+ 
Sbjct: 336 RFGYTFRETVSPSAENGFVFNEIGRRLSSYDCYVKCLQNCSCVAYASTNGDGTGCEIWNT 395

Query: 385 E 385
           +
Sbjct: 396 D 396
Promotes the expression of genes involved in photosynthesis at least in dedifferentiated calli.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1
>sp|O64793|Y1675_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520 OS=Arabidopsis thaliana GN=At1g67520 PE=2 SV=3 Back     alignment and function description
>sp|O81832|Y4729_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 OS=Arabidopsis thaliana GN=At4g27290 PE=3 SV=4 Back     alignment and function description
>sp|Q9LPZ9|SD113_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase SD1-13 OS=Arabidopsis thaliana GN=SD113 PE=1 SV=2 Back     alignment and function description
>sp|O81833|SD11_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 OS=Arabidopsis thaliana GN=SD11 PE=1 SV=1 Back     alignment and function description
>sp|O81906|B120_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase B120 OS=Arabidopsis thaliana GN=B120 PE=1 SV=1 Back     alignment and function description
>sp|O64477|Y2913_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 OS=Arabidopsis thaliana GN=At2g19130 PE=2 SV=1 Back     alignment and function description
>sp|P17840|SLSG3_BRAOL S-locus-specific glycoprotein S13 OS=Brassica oleracea GN=SLSG PE=2 SV=2 Back     alignment and function description
>sp|Q39086|SD17_ARATH Receptor-like serine/threonine-protein kinase SD1-7 OS=Arabidopsis thaliana GN=SD17 PE=1 SV=1 Back     alignment and function description
>sp|O81905|SD18_ARATH Receptor-like serine/threonine-protein kinase SD1-8 OS=Arabidopsis thaliana GN=SD18 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query417
297807869413 hypothetical protein ARALYDRAFT_488726 [ 0.928 0.937 0.444 7e-96
255562013 593 conserved hypothetical protein [Ricinus 0.822 0.578 0.437 6e-92
15238837413 curculin-like (mannose-binding) lectin f 0.947 0.956 0.414 3e-87
255550034 789 receptor protein kinase, putative [Ricin 0.892 0.471 0.372 6e-66
359480375 757 PREDICTED: G-type lectin S-receptor-like 0.853 0.470 0.390 4e-63
296081048 711 unnamed protein product [Vitis vinifera] 0.880 0.516 0.387 5e-63
147771611 1091 hypothetical protein VITISV_043229 [Viti 0.836 0.319 0.391 5e-62
225463860 795 PREDICTED: G-type lectin S-receptor-like 0.872 0.457 0.384 4e-61
296081050 657 unnamed protein product [Vitis vinifera] 0.846 0.537 0.390 4e-61
255550026 795 Serine/threonine-protein kinase PBS1, pu 0.858 0.450 0.379 8e-61
>gi|297807869|ref|XP_002871818.1| hypothetical protein ARALYDRAFT_488726 [Arabidopsis lyrata subsp. lyrata] gi|297317655|gb|EFH48077.1| hypothetical protein ARALYDRAFT_488726 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
 Score =  357 bits (915), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 182/409 (44%), Positives = 263/409 (64%), Gaps = 22/409 (5%)

Query: 6   LLFLIVPSILLLPHSLSQAESDTLKQGQQLHDWDELVSAEGVFKLGFFSPG-SKTVDIGV 64
            +FL++P+ L    ++S  ++DTLK GQQL DW++L+SA G+F LGFF+P  S T ++G 
Sbjct: 10  FIFLLIPTFLSSVFAISPLKTDTLKPGQQLRDWEQLISAGGIFALGFFTPKESSTSELGS 69

Query: 65  IAPRYIGIWFNKIPFYPLWVANPNNPVPDSSGVLRMDTDGILKFAYKGGSRIAVSSNRAK 124
             PRY+GIW  +IP  P+WV NP   + DSSG L +DT+G+LK   +    I V+   A+
Sbjct: 70  AGPRYLGIWPQRIPINPVWVGNPIESISDSSGALSIDTNGVLKITQENAFPILVNQRPAR 129

Query: 125 KANSETNITATLLDSGNLLVRQIGADGIAGPILWQSFDYPSNMLLPEMKLGINLKTGHEW 184
           + +   N++ATLLDSGN +VR+I   G+ G +LWQSFD+P+N LLP MK+G NL+T  E 
Sbjct: 130 QLSLSGNVSATLLDSGNFVVREIRPGGVPGRVLWQSFDHPTNTLLPGMKIGFNLRTKKEV 189

Query: 185 YLSSWLSEQLPSPGAFRLGLNPNGSRELMVWRRGEVYWRSGEW-KNGKFELAPELTEGTF 243
            ++SW+S+Q+P PGAFRLGL+P+G+ +L+VWRRGE+YW SG    NG   L  EL     
Sbjct: 190 SVTSWISDQVPVPGAFRLGLDPSGANQLLVWRRGEIYWSSGILTNNGSSHLTLEL----- 244

Query: 244 TKQLDAYQFRFVTNENERYFSYSKR--SNFILSRWLLNDLGQIEQF----TRDTSGWIWE 297
           ++    Y+F+F +N+  RYFSYS +  +N +LS W L+ LGQI       +  +S WI E
Sbjct: 245 SRHYIDYEFKFDSNKYMRYFSYSIKEANNSVLSSWFLDTLGQITVTNVLSSNKSSNWISE 304

Query: 298 TTSPCNTNYTMNATGVCLNEKPSNCRNGSEFFAPRKGCM---NVSFTYMNIDDNAGLALS 354
           ++ PC T+   N++ +C+ EKP+ CR GSE+F PR+G M   N  +     DD+    LS
Sbjct: 305 SSEPCKTDLK-NSSAICIKEKPTACRKGSEYFEPRRGYMMDNNNGYYPFYYDDSLSAGLS 363

Query: 355 DCHAKCWTNCSCSAYSSVFDNGTGCEFWSREVQFIPDEGFGREIYLLTY 403
           DCH  CW NCSC A+ +  D   GC++W +  +F+  + F     L+TY
Sbjct: 364 DCHGNCWRNCSCIAFQAFPD---GCQYWEKGSKFVHYDSFNSN--LITY 407

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255562013|ref|XP_002522015.1| conserved hypothetical protein [Ricinus communis] gi|223538819|gb|EEF40419.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|15238837|ref|NP_197348.1| curculin-like (mannose-binding) lectin family protein [Arabidopsis thaliana] gi|13877921|gb|AAK44038.1|AF370223_1 unknown protein [Arabidopsis thaliana] gi|20466672|gb|AAM20653.1| putative protein [Arabidopsis thaliana] gi|21436327|gb|AAM51333.1| unknown protein [Arabidopsis thaliana] gi|332005184|gb|AED92567.1| curculin-like (mannose-binding) lectin family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255550034|ref|XP_002516068.1| receptor protein kinase, putative [Ricinus communis] gi|223544973|gb|EEF46488.1| receptor protein kinase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359480375|ref|XP_002268267.2| PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296081048|emb|CBI18329.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147771611|emb|CAN64778.1| hypothetical protein VITISV_043229 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225463860|ref|XP_002268342.1| PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296081050|emb|CBI18331.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255550026|ref|XP_002516064.1| Serine/threonine-protein kinase PBS1, putative [Ricinus communis] gi|223544969|gb|EEF46484.1| Serine/threonine-protein kinase PBS1, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query417
TAIR|locus:2146263413 AT5G18470 [Arabidopsis thalian 0.894 0.903 0.443 7.5e-89
TAIR|locus:2093397 850 CES101 "CALLUS EXPRESSION OF R 0.592 0.290 0.396 5.5e-51
TAIR|locus:2131694 815 AT4G27300 [Arabidopsis thalian 0.707 0.361 0.347 9.8e-47
TAIR|locus:2131684 783 AT4G27290 [Arabidopsis thalian 0.681 0.362 0.333 3.4e-43
TAIR|locus:2200151 830 SD1-13 "S-domain-1 13" [Arabid 0.647 0.325 0.333 2.2e-42
TAIR|locus:2141176 849 B120 [Arabidopsis thaliana (ta 0.690 0.339 0.320 6.9e-41
TAIR|locus:2059103 828 AT2G19130 [Arabidopsis thalian 0.671 0.338 0.301 4.1e-40
TAIR|locus:2141181 850 RK3 "receptor kinase 3" [Arabi 0.690 0.338 0.310 1.5e-37
TAIR|locus:2018546 843 RK1 "receptor kinase 1" [Arabi 0.625 0.309 0.312 1.1e-36
TAIR|locus:2088619439 AT3G12000 [Arabidopsis thalian 0.669 0.635 0.304 1.2e-35
TAIR|locus:2146263 AT5G18470 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 887 (317.3 bits), Expect = 7.5e-89, P = 7.5e-89
 Identities = 175/395 (44%), Positives = 254/395 (64%)

Query:    20 SLSQAESDTLKQGQQLHDWDELVSAEGVFKLGFFSP-GSKTVDIGVIAPRYIGIWFNKIP 78
             ++S  ++DTLK GQQL DW++L+SA+G+F LGFF+P  S T ++G    RY+GIW   IP
Sbjct:    24 AVSPLKTDTLKPGQQLRDWEQLISADGIFTLGFFTPKDSSTSELGSAGLRYLGIWPQSIP 83

Query:    79 FYPLWVANPNNPVPDSSGVLRMDTDGILKFAYKGGSRIAVSSNRAKKANSETNITATLLD 138
                +WV NP   V DSSG L +DT+G+LK        I V+   A + +   N++A LLD
Sbjct:    84 INLVWVGNPTESVSDSSGSLSIDTNGVLKITQANAIPILVNQRPAAQLSLVGNVSAILLD 143

Query:   139 SGNLLVRQIGADGIAGPILWQSFDYPSNMLLPEMKLGINLKTGHEWYLSSWLSEQLPSPG 198
             +GN +VR+I   G+ G +LWQSFD+P+N LLP MK+G NL+T  E  ++SW+++Q+P PG
Sbjct:   144 TGNFVVREIRPGGVPGRVLWQSFDHPTNTLLPGMKIGFNLRTKKEVSVTSWITDQVPVPG 203

Query:   199 AFRLGLNPNGSRELMVWRRGEVYWRSGEW-KNGKFELAPELTEGTFTKQLDAYQFRFVTN 257
             AFRLGL+P+G+ +L+VWRRGE+YW SG    NG   L  E++       +D Y+F+F +N
Sbjct:   204 AFRLGLDPSGANQLLVWRRGEIYWSSGILTNNGSSHLNLEVSR----HYID-YEFKFDSN 258

Query:   258 ENERYFSYS-KRSNF-ILSRWLLNDLGQIE-QFT---RDTSGWIWETTSPCNTNYTMNAT 311
             +  +YFSYS K++N  + S W L+ LGQI   F+    ++S WI E++ PC T+   N++
Sbjct:   259 KYMKYFSYSIKKANSSVFSSWFLDTLGQITVTFSLSSNNSSTWISESSEPCKTDLK-NSS 317

Query:   312 GVCLNEKPSNCRNGSEFFAPRKGCM---NVSFTYMNIDDNAGLALSDCHAKCWTNCSCSA 368
              +C+ EKP+ CR GSE+F PR+G M   N  +     DD+    LSDCH  CW NCSC A
Sbjct:   318 AICITEKPTACRKGSEYFEPRRGYMMENNTGYYPFYYDDSLSAGLSDCHGTCWRNCSCIA 377

Query:   369 YSSVFDNGTGCEFWSREVQFIPDEGFGREIYLLTY 403
             + +  D   GC++W +  +F+P + F     L+TY
Sbjct:   378 FQAFPD---GCQYWEKGSKFVPYDSFNSN--LVTY 407
GO:0005886 "plasma membrane" evidence=ISM
GO:0030246 "carbohydrate binding" evidence=IEA;ISS
GO:0009505 "plant-type cell wall" evidence=IDA
GO:0080167 "response to karrikin" evidence=IEP
TAIR|locus:2093397 CES101 "CALLUS EXPRESSION OF RBCS 101" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2131694 AT4G27300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2131684 AT4G27290 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200151 SD1-13 "S-domain-1 13" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2141176 B120 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2059103 AT2G19130 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2141181 RK3 "receptor kinase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018546 RK1 "receptor kinase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088619 AT3G12000 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query417
cd00028116 cd00028, B_lectin, Bulb-type mannose-specific lect 8e-23
pfam01453109 pfam01453, B_lectin, D-mannose binding lectin 4e-22
smart00108114 smart00108, B_lectin, Bulb-type mannose-specific l 4e-19
pfam00954110 pfam00954, S_locus_glycop, S-locus glycoprotein fa 4e-10
cd0109884 cd01098, PAN_AP_plant, Plant PAN/APPLE-like domain 1e-07
pfam0827666 pfam08276, PAN_2, PAN-like domain 6e-06
>gnl|CDD|237995 cd00028, B_lectin, Bulb-type mannose-specific lectin Back     alignment and domain information 
 Score = 92.4 bits (230), Expect = 8e-23
 Identities = 41/124 (33%), Positives = 56/124 (45%), Gaps = 17/124 (13%)

Query: 41  LVSAEGVFKLGFFSPGSKTVDIGVIAPRYIGIWFNKIPFYPLWVANPNNPVPDSSGVLRM 100
           LVS+  +F+LGFF    ++ D       Y  I +       +WVAN +NP   SS  L +
Sbjct: 10  LVSSGSLFELGFFKLIMQSRD-------YNLILYKGSSRTVVWVANRDNPS-GSSCTLTL 61

Query: 101 DTDGILKFAYKGGSRIAVSSNRAKKANSETNITATLLDSGNLLVRQIGADGIAGPILWQS 160
            +DG L      G+ +  S+      N        LLD GNL++         G  LWQS
Sbjct: 62  QSDGNLVIYDGSGTVVWSSNTTRVNGNY----VLVLLDDGNLVLY-----DSDGNFLWQS 112

Query: 161 FDYP 164
           FDYP
Sbjct: 113 FDYP 116

The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses. Length = 116
>gnl|CDD|216511 pfam01453, B_lectin, D-mannose binding lectin Back     alignment and domain information
>gnl|CDD|214519 smart00108, B_lectin, Bulb-type mannose-specific lectin Back     alignment and domain information
>gnl|CDD|201524 pfam00954, S_locus_glycop, S-locus glycoprotein family Back     alignment and domain information
>gnl|CDD|238531 cd01098, PAN_AP_plant, Plant PAN/APPLE-like domain; present in plant S-receptor protein kinases and secreted glycoproteins Back     alignment and domain information
>gnl|CDD|219774 pfam08276, PAN_2, PAN-like domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 417
PF01453114 B_lectin: D-mannose binding lectin; InterPro: IPR0 99.95
cd00028116 B_lectin Bulb-type mannose-specific lectin. The do 99.93
smart00108114 B_lectin Bulb-type mannose-specific lectin. 99.91
PF00954110 S_locus_glycop: S-locus glycoprotein family; Inter 99.68
PF0827666 PAN_2: PAN-like domain; InterPro: IPR013227 PAN do 99.57
cd0109884 PAN_AP_plant Plant PAN/APPLE-like domain; present 99.43
cd0012980 PAN_APPLE PAN/APPLE-like domain; present in N-term 99.38
smart00108114 B_lectin Bulb-type mannose-specific lectin. 98.74
cd00028116 B_lectin Bulb-type mannose-specific lectin. The do 98.65
smart0047378 PAN_AP divergent subfamily of APPLE domains. Apple 98.54
PF01453114 B_lectin: D-mannose binding lectin; InterPro: IPR0 98.45
cd0110073 APPLE_Factor_XI_like Subfamily of PAN/APPLE-like d 97.49
PF0002479 PAN_1: PAN domain This Prosite entry concerns appl 93.12
smart0022379 APPLE APPLE domain. Four-fold repeat in plasma kal 87.86
PF1429551 PAN_4: PAN domain; PDB: 2YIL_E 2YIP_C 2YIO_A. 84.45
smart0060594 CW CW domain. 82.17
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity Back     alignment and domain information 
Probab=99.95  E-value=3e-29  Score=213.27  Aligned_cols=110  Identities=41%  Similarity=0.609  Sum_probs=79.3

Q ss_pred             CccEEeeCCCCCCCCC--CceEEEecCCCEEEEecCCCeEEEec-ccccccccCCceEEEEecCCCEEEEeccccCCCCc
Q 014851           79 FYPLWVANPNNPVPDS--SGVLRMDTDGILKFAYKGGSRIAVSS-NRAKKANSETNITATLLDSGNLLVRQIGADGIAGP  155 (417)
Q Consensus        79 ~~~vW~Anr~~p~~~~--~~~l~l~~dG~Lvl~d~~~~~vW~ss-~~~~~~~~~~~~~a~Lld~GNlVl~d~~~~~~~~~  155 (417)
                      +++||+|||++|+...  ..+|.|+.||+|+|++..++.+| ++ ++.+++  ..+..|+|+|+|||||++..     +.
T Consensus         2 ~tvvW~an~~~p~~~~s~~~~L~l~~dGnLvl~~~~~~~iW-ss~~t~~~~--~~~~~~~L~~~GNlvl~d~~-----~~   73 (114)
T PF01453_consen    2 RTVVWVANRNSPLTSSSGNYTLILQSDGNLVLYDSNGSVIW-SSNNTSGRG--NSGCYLVLQDDGNLVLYDSS-----GN   73 (114)
T ss_dssp             --------TTEEEEECETTEEEEEETTSEEEEEETTTEEEE-E--S-TTSS---SSEEEEEETTSEEEEEETT-----SE
T ss_pred             cccccccccccccccccccccceECCCCeEEEEcCCCCEEE-EecccCCcc--ccCeEEEEeCCCCEEEEeec-----ce
Confidence            5899999999999532  37899999999999999999999 98 433321  24789999999999999965     78


Q ss_pred             eEeeecCCCCCccCCCCeeeceecCCCeeEEEEecCCCCCC
Q 014851          156 ILWQSFDYPSNMLLPEMKLGINLKTGHEWYLSSWLSEQLPS  196 (417)
Q Consensus       156 ~lWqSFd~PTDTlLPgqkL~~n~~~G~~~~LtSw~S~~dps  196 (417)
                      +|||||||||||+||+|+|+.+..+|.+..|+||++.+|||
T Consensus        74 ~lW~Sf~~ptdt~L~~q~l~~~~~~~~~~~~~sw~s~~dps  114 (114)
T PF01453_consen   74 VLWQSFDYPTDTLLPGQKLGDGNVTGKNDSLTSWSSNTDPS  114 (114)
T ss_dssp             EEEESTTSSS-EEEEEET--TSEEEEESTSSEEEESS----
T ss_pred             EEEeecCCCccEEEeccCcccCCCccccceEEeECCCCCCC
Confidence            99999999999999999999766666556799999999996

Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
>cd00028 B_lectin Bulb-type mannose-specific lectin Back     alignment and domain information
>smart00108 B_lectin Bulb-type mannose-specific lectin Back     alignment and domain information
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation Back     alignment and domain information
>PF08276 PAN_2: PAN-like domain; InterPro: IPR013227 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions [] Back     alignment and domain information
>cd01098 PAN_AP_plant Plant PAN/APPLE-like domain; present in plant S-receptor protein kinases and secreted glycoproteins Back     alignment and domain information
>cd00129 PAN_APPLE PAN/APPLE-like domain; present in N-terminal (N) domains of plasminogen/ hepatocyte growth factor proteins, plasma prekallikrein/coagulation factor XI and microneme antigen proteins, plant receptor-like protein kinases, and various nematode and leech anti-platelet proteins Back     alignment and domain information
>smart00108 B_lectin Bulb-type mannose-specific lectin Back     alignment and domain information
>cd00028 B_lectin Bulb-type mannose-specific lectin Back     alignment and domain information
>smart00473 PAN_AP divergent subfamily of APPLE domains Back     alignment and domain information
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity Back     alignment and domain information
>cd01100 APPLE_Factor_XI_like Subfamily of PAN/APPLE-like domains; present in plasma prekallikrein/coagulation factor XI, microneme antigen proteins, and a few prokaryotic proteins Back     alignment and domain information
>PF00024 PAN_1: PAN domain This Prosite entry concerns apple domains, a subset of PAN domains; InterPro: IPR003014 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions [] Back     alignment and domain information
>smart00223 APPLE APPLE domain Back     alignment and domain information
>PF14295 PAN_4: PAN domain; PDB: 2YIL_E 2YIP_C 2YIO_A Back     alignment and domain information
>smart00605 CW CW domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query417
1xd5_A112 Gastrodianin-1, antifungal protein GAFP-1; monocot 5e-04
>1xd5_A Gastrodianin-1, antifungal protein GAFP-1; monocot mannose binding lectin, monomer, homogeneous beta- sheet; 2.00A {Gastrodia elata} SCOP: b.78.1.1 PDB: 1xd6_A Length = 112 Back     alignment and structure
 Score = 38.4 bits (89), Expect = 5e-04
 Identities = 25/141 (17%), Positives = 42/141 (29%), Gaps = 29/141 (20%)

Query: 26  SDTLKQGQQLHDWDELVSAEGVFKLGFFSPGSKTVDIGVIAPRYIGIWFNKIPFYPLWVA 85
           SD L  G QL     L    G +     +  +            + ++ N       W +
Sbjct: 1   SDRLNSGHQLDTGGSLAE--GGYLFIIQNDCN------------LVLYDNNRAV---WAS 43

Query: 86  NPNNPVPDSSGVLRMDTDGILKFAYKGGSRIAVSSNRAKKANSETNITATLLDSGNLLVR 145
             N        VL+M  DG L       +  A ++NR        N    L    N+++ 
Sbjct: 44  GTNGKASGC--VLKMQNDGNLVIYSGSRAIWASNTNRQNG-----NYYLILQRDRNVVIY 96

Query: 146 QIGADGIAGPILWQSFDYPSN 166
                  +   +W +     N
Sbjct: 97  -----DNSNNAIWATHTNVGN 112

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query417
3m7h_A276 Putidacin L1; monocot mannose-binding lectin, bact 100.0
1dlp_A236 Lectin scafet precursor; two-domain lectin, beta p 100.0
4h3o_A105 Lectin; cadmium, plant protein; 2.17A {Allium sati 99.87
3a0c_A110 Mannose/sialic acid-binding lectin; beta-prism II, 99.84
1b2p_A119 Protein (lectin); mannose-binding lectin, monocot, 99.83
2dpf_A115 Curculin; sweet taste, taste modifying, plant prot 99.81
1xd5_A112 Gastrodianin-1, antifungal protein GAFP-1; monocot 99.81
3dzw_A109 Agglutinin; lectin, mannobiose, mannose-alpha1, 3- 99.76
3r0e_B110 Lectin; carbohydrate binding, carbohydrate, sugar 99.72
3mez_B113 Mannose-specific lectin 3 chain 2; heterotetramer, 99.71
1xd5_A112 Gastrodianin-1, antifungal protein GAFP-1; monocot 99.69
3r0e_A109 Lectin; carbohydrate binding, carbohydrate, sugar 99.69
3a0c_A110 Mannose/sialic acid-binding lectin; beta-prism II, 99.66
1b2p_A119 Protein (lectin); mannose-binding lectin, monocot, 99.62
2dpf_A115 Curculin; sweet taste, taste modifying, plant prot 99.6
3mez_A111 Mannose-specific lectin 3 chain 1; heterotetramer, 99.6
3mez_B113 Mannose-specific lectin 3 chain 2; heterotetramer, 99.39
3m7h_A276 Putidacin L1; monocot mannose-binding lectin, bact 99.34
3mez_A111 Mannose-specific lectin 3 chain 1; heterotetramer, 99.31
3dzw_A109 Agglutinin; lectin, mannobiose, mannose-alpha1, 3- 99.22
3r0e_B110 Lectin; carbohydrate binding, carbohydrate, sugar 99.21
3r0e_A109 Lectin; carbohydrate binding, carbohydrate, sugar 99.17
4h3o_A105 Lectin; cadmium, plant protein; 2.17A {Allium sati 99.14
1dlp_A236 Lectin scafet precursor; two-domain lectin, beta p 98.98
2ll3_A82 Micronemal protein 4; cell adhesion; NMR {Toxoplas 92.1
>3m7h_A Putidacin L1; monocot mannose-binding lectin, bacteriocin, LLPA, pseudomon bacterial toxin, siras, antimicrobial protein; 2.20A {Pseudomonas SP} PDB: 3m7j_A* Back     alignment and structure
Probab=100.00  E-value=4.1e-43  Score=340.61  Aligned_cols=233  Identities=19%  Similarity=0.238  Sum_probs=176.4

Q ss_pred             ccccccccCCCcccCCCeEEeCCCeEEEEeecCCCCCccccccCceEEEEEeccCC-CccEEeeCCCCCCCCC----Cce
Q 014851           23 QAESDTLKQGQQLHDWDELVSAEGVFKLGFFSPGSKTVDIGVIAPRYIGIWFNKIP-FYPLWVANPNNPVPDS----SGV   97 (417)
Q Consensus        23 ~~~~~~l~~g~~l~~~~~l~S~~g~F~lgf~~~~~~~~~~~~~~~~~lgiw~~~~~-~~~vW~Anr~~p~~~~----~~~   97 (417)
                      +++.|+|.+|++|.+|++|+|++|.|+||||.++          ++||   |+  + + +||+|||++|+.+.    +++
T Consensus        11 ~~~~~~l~~g~~l~~~~~l~S~~g~F~lgf~~~~----------~~~l---y~--~~~-vvW~Anr~~p~~~~~~~~~~~   74 (276)
T 3m7h_A           11 GVGTSVLPAYQTLSAGQYLLSPNQRFKLLLQGDG----------NLVI---QD--NGA-TVWVANEQQPFSSTIPLRNKK   74 (276)
T ss_dssp             CTTSSEECTTEEBCTTCEEECTTSSEEEEECTTS----------CEEE---EE--TTE-EEEECSTTSTTEEEEECCCTT
T ss_pred             cccCCEecCCCEecCCCEEEcCCCcEEEEEECCC----------CeEE---EC--CCC-eEEECCCCCCcCCcccccceE
Confidence            3468999999999999999999999999999543          2566   65  5 6 99999999999864    689


Q ss_pred             EEEecCCCEEE--EecCCCeEEEecccccccc--cCCceEEEEecCCCEEEEeccccCCCCceEeeecCCCCCccCCCCe
Q 014851           98 LRMDTDGILKF--AYKGGSRIAVSSNRAKKAN--SETNITATLLDSGNLLVRQIGADGIAGPILWQSFDYPSNMLLPEMK  173 (417)
Q Consensus        98 l~l~~dG~Lvl--~d~~~~~vW~ss~~~~~~~--~~~~~~a~Lld~GNlVl~d~~~~~~~~~~lWqSFd~PTDTlLPgqk  173 (417)
                      |+|+.||+|||  .|++|.+|| ++++.....  ...+++|+|+|+|||||++ .      .+||||  |||||||||||
T Consensus        75 l~l~~~G~Lvl~~~~~~~~~vW-st~~~~~~~~~~~~~~~a~L~d~GNlVl~~-~------~~lWqS--~ptdtlLpg~~  144 (276)
T 3m7h_A           75 APLAFYVQYGAFLDDYSRRRVW-LTDNSTFTSNDQWNRTHLVLQDDGNIVLVD-S------LALWNG--TPAIPLVPGAI  144 (276)
T ss_dssp             CCSEEEESSSEEEEEGGGTEEE-EECCCCCCCTTHHHHEEEEECTTSCEEEEE-E------EEEEES--CTTSCCCCSCT
T ss_pred             EEEeCCCcEEEEEeCCCCCEEE-EeCCCcccccccCCceEEEEeCCCCEEecC-C------ceeeCc--ccccccccccc
Confidence            99999999999  788899999 988432100  0135789999999999998 3      689999  99999999999


Q ss_pred             eeceecCCCeeEEEEecCCCCCCCcceEEeecCCCccceEEeeC-CeEEEEeCCcCCCceecCcccccccccccCCceeE
Q 014851          174 LGINLKTGHEWYLSSWLSEQLPSPGAFRLGLNPNGSRELMVWRR-GEVYWRSGEWKNGKFELAPELTEGTFTKQLDAYQF  252 (417)
Q Consensus       174 L~~n~~~G~~~~LtSw~S~~dps~G~ysl~~~~~g~~~l~i~~~-~~~YW~sg~w~g~~f~~~p~~~~~~~~~~~~~~~~  252 (417)
                      |+.++++|  +.|   ++.+||++|.|+|+|+++|.  +++|+. ..+||++|+|++..    ..+.   +..   ...+
T Consensus       145 ~~~~l~~g--~~L---~S~~dps~G~fsl~l~~dGn--lvLy~~~~~~yW~Sgt~~~~~----~~l~---l~~---dGnL  207 (276)
T 3m7h_A          145 DSLLLAPG--SEL---VQGVVYGAGASKLVFQGDGN--LVAYGPNGAATWNAGTQGKGA----VRAV---FQG---DGNL  207 (276)
T ss_dssp             TCEEECSS--EEE---CTTCEEEETTEEEEECTTSC--EEEECTTSSEEEECCCTTTTC----CEEE---ECT---TSCE
T ss_pred             cccccccC--ccc---ccCCCCCCceEEEeecCCce--EEEEeCCCeEEEECCCCCCcc----EEEE---EcC---CCeE
Confidence            99999999  667   57899999999999999985  445654 58999999987532    1121   112   3344


Q ss_pred             EEEEcCC-eEEEEEEecCCCeEEEEEeCCCccEEEEecCCCCeEEeeecC
Q 014851          253 RFVTNEN-ERYFSYSKRSNFILSRWLLNDLGQIEQFTRDTSGWIWETTSP  301 (417)
Q Consensus       253 ~f~~n~~-e~~~~y~~~~~~~~~rl~Ld~dG~lr~y~~~~~~W~~~w~~P  301 (417)
                      .+.++++ .++.++.  .....+|++|+.||+|++|.. ...|...+..|
T Consensus       208 vl~d~~~~~vWsS~t--~~~~~~rl~Ld~dGnLvly~~-~~~Wqsf~~~P  254 (276)
T 3m7h_A          208 VVYGAGNAVLWHSHT--GGHASAVLRLQANGSIAILDE-KPVWARFGFQP  254 (276)
T ss_dssp             EEECTTSCEEEECSC--TTCTTCEEEECTTSCEEEEEE-EEEEESSSCCT
T ss_pred             EEEeCCCcEEEEecC--CCCCCEEEEEcCCccEEEEcC-CCeEEccCccC
Confidence            5555543 3333322  222347999999999999983 22344444444
>1dlp_A Lectin scafet precursor; two-domain lectin, beta prism II fold, native, sugar binding protein; 3.30A {Hyacinthoides hispanica} SCOP: b.78.1.1 b.78.1.1 Back     alignment and structure
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D* Back     alignment and structure
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A* Back     alignment and structure
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1 Back     alignment and structure
>2dpf_A Curculin; sweet taste, taste modifying, plant protein; 1.50A {Curculigo latifolia} PDB: 2d04_B* 2d04_A* Back     alignment and structure
>1xd5_A Gastrodianin-1, antifungal protein GAFP-1; monocot mannose binding lectin, monomer, homogeneous beta- sheet; 2.00A {Gastrodia elata} SCOP: b.78.1.1 PDB: 1xd6_A Back     alignment and structure
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} SCOP: b.78.1.1 PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A* Back     alignment and structure
>3r0e_B Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Back     alignment and structure
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0 Back     alignment and structure
>1xd5_A Gastrodianin-1, antifungal protein GAFP-1; monocot mannose binding lectin, monomer, homogeneous beta- sheet; 2.00A {Gastrodia elata} SCOP: b.78.1.1 PDB: 1xd6_A Back     alignment and structure
>3r0e_A Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Back     alignment and structure
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A* Back     alignment and structure
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1 Back     alignment and structure
>2dpf_A Curculin; sweet taste, taste modifying, plant protein; 1.50A {Curculigo latifolia} PDB: 2d04_B* 2d04_A* Back     alignment and structure
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0 Back     alignment and structure
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0 Back     alignment and structure
>3m7h_A Putidacin L1; monocot mannose-binding lectin, bacteriocin, LLPA, pseudomon bacterial toxin, siras, antimicrobial protein; 2.20A {Pseudomonas SP} PDB: 3m7j_A* Back     alignment and structure
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0 Back     alignment and structure
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} SCOP: b.78.1.1 PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A* Back     alignment and structure
>3r0e_B Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Back     alignment and structure
>3r0e_A Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Back     alignment and structure
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D* Back     alignment and structure
>1dlp_A Lectin scafet precursor; two-domain lectin, beta prism II fold, native, sugar binding protein; 3.30A {Hyacinthoides hispanica} SCOP: b.78.1.1 b.78.1.1 Back     alignment and structure
>2ll3_A Micronemal protein 4; cell adhesion; NMR {Toxoplasma gondii} PDB: 2ll4_M* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 417
d1kj1a_109 b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium 2e-10
d1xd5a_112 b.78.1.1 (A:) Gastrodianin (antifungal protein) {G 2e-07
d1jpca_108 b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galan 9e-07
d1dlpa2120 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet 4e-06
d1dlpa1115 b.78.1.1 (A:1-115) Fetuin-binding protein Scafet p 6e-04
>d1kj1a_ b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium sativum) [TaxId: 4682]} Length = 109 Back     information, alignment and structure

class: All beta proteins
fold: beta-Prism II
superfamily: alpha-D-mannose-specific plant lectins
family: alpha-D-mannose-specific plant lectins
domain: Lectin (agglutinin)
species: Garlic (Allium sativum) [TaxId: 4682]

 Score = 55.3 bits (133), Expect = 2e-10
 Identities = 17/137 (12%), Positives = 37/137 (27%), Gaps = 30/137 (21%)

Query: 27  DTLKQGQQLHDWDELVSAEGVFKLGFFSPGSKTVDIGVIAPRYIGIWFNKIPFYPLWVAN 86
           + L  G+ L+    L      +                     + ++ +      +W +N
Sbjct: 2   NLLTNGEGLYAGQSLDV--EPYHFIMQEDC------------NLVLYDHS---TSVWASN 44

Query: 87  PNNPVPDSSGVLRMDTDGILKFAYKGGSRIAVSSNRAKKANSETNITATLLDSGNLLVRQ 146
                        + +DG        G  +  S +     N        L + GN+++  
Sbjct: 45  TGILGKKGCK-AVLQSDGNFVVYDAEGRSLWASHSVRGNGNY----VLVLQEDGNVVIY- 98

Query: 147 IGADGIAGPILWQSFDY 163
                  G  +W +  Y
Sbjct: 99  -------GSDIWSTGTY 108
>d1xd5a_ b.78.1.1 (A:) Gastrodianin (antifungal protein) {Gastrodia elata [TaxId: 91201]} Length = 112 Back     information, alignment and structure
>d1jpca_ b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galanthus nivalis) [TaxId: 4670]} Length = 108 Back     information, alignment and structure
>d1dlpa2 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Length = 120 Back     information, alignment and structure
>d1dlpa1 b.78.1.1 (A:1-115) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Length = 115 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query417
d1xd5a_112 Gastrodianin (antifungal protein) {Gastrodia elata 99.86
d1kj1a_109 Lectin (agglutinin) {Garlic (Allium sativum) [TaxI 99.84
d1jpca_108 Lectin (agglutinin) {Snowdrop (Galanthus nivalis) 99.84
d1dlpa2120 Fetuin-binding protein Scafet precursor {Bluebell 99.67
d1b2pa_119 Lectin (agglutinin) {Bluebell (Scilla campanulata) 99.65
d1dlpa1115 Fetuin-binding protein Scafet precursor {Bluebell 99.6
d1dlpa1115 Fetuin-binding protein Scafet precursor {Bluebell 99.46
d1dlpa2120 Fetuin-binding protein Scafet precursor {Bluebell 99.26
d1b2pa_119 Lectin (agglutinin) {Bluebell (Scilla campanulata) 99.2
d1kj1a_109 Lectin (agglutinin) {Garlic (Allium sativum) [TaxI 99.15
d1jpca_108 Lectin (agglutinin) {Snowdrop (Galanthus nivalis) 99.08
d1xd5a_112 Gastrodianin (antifungal protein) {Gastrodia elata 98.9
d2qj2a191 Hepatocyte growth factor {Human (Homo sapiens) [Ta 83.38
>d1xd5a_ b.78.1.1 (A:) Gastrodianin (antifungal protein) {Gastrodia elata [TaxId: 91201]} Back     information, alignment and structure
class: All beta proteins
fold: beta-Prism II
superfamily: alpha-D-mannose-specific plant lectins
family: alpha-D-mannose-specific plant lectins
domain: Gastrodianin (antifungal protein)
species: Gastrodia elata [TaxId: 91201]

Probab=99.86  E-value=7.5e-22  Score=164.01  Aligned_cols=112  Identities=22%  Similarity=0.297  Sum_probs=92.0

Q ss_pred             cccccCCCcccCCCeEEeCCCeEEEEeecCCCCCccccccCceEEEEEeccCCCccEEeeCCCCCCCCCCceEEEecCCC
Q 014851           26 SDTLKQGQQLHDWDELVSAEGVFKLGFFSPGSKTVDIGVIAPRYIGIWFNKIPFYPLWVANPNNPVPDSSGVLRMDTDGI  105 (417)
Q Consensus        26 ~~~l~~g~~l~~~~~l~S~~g~F~lgf~~~~~~~~~~~~~~~~~lgiw~~~~~~~~vW~Anr~~p~~~~~~~l~l~~dG~  105 (417)
                      +|+|.+||.|..|+.|+|  |.|+|.||.+|+.            .++.   +.++||.|+++.|.  ..+.|.|+.||+
T Consensus         1 tDtL~~gq~L~~g~~l~~--g~~~l~~q~DGNL------------vly~---~~~~vW~s~~~~~~--~~~~l~l~~dGn   61 (112)
T d1xd5a_           1 SDRLNSGHQLDTGGSLAE--GGYLFIIQNDCNL------------VLYD---NNRAVWASGTNGKA--SGCVLKMQNDGN   61 (112)
T ss_dssp             CCEEETTEEECTTCEEEE--TTEEEEECTTSCE------------EEEE---TTEEEEECCCTTSC--SSEEEEECTTSC
T ss_pred             CCEecCCCEecCCCEEEE--CCEEEEEcCCCCE------------EEEc---CCcEEEEccCccCC--CCcEEEEecccc
Confidence            589999999999999975  9999999988753            2333   27899999999874  357899999999


Q ss_pred             EEEEecCCCeEEEecccccccccCCceEEEEecCCCEEEEeccccCCCCceEeeecCCCCC
Q 014851          106 LKFAYKGGSRIAVSSNRAKKANSETNITATLLDSGNLLVRQIGADGIAGPILWQSFDYPSN  166 (417)
Q Consensus       106 Lvl~d~~~~~vW~ss~~~~~~~~~~~~~a~Lld~GNlVl~d~~~~~~~~~~lWqSFd~PTD  166 (417)
                      |||+|. +.++| ++++.. .  .+..+|+|+|+|||||++.+     +.++|||+.+|++
T Consensus        62 Lvl~~~-~~~~w-~s~t~~-~--~~~~~l~L~ddGNlvly~~~-----~~~~W~S~t~~~n  112 (112)
T d1xd5a_          62 LVIYSG-SRAIW-ASNTNR-Q--NGNYYLILQRDRNVVIYDNS-----NNAIWATHTNVGN  112 (112)
T ss_dssp             EEEEET-TEEEE-ECCCCC-S--CCCCEEEECTTSCEEEECTT-----SCEEEECCCCCCC
T ss_pred             EEEEec-CCeEE-EEeecc-C--CCceEEEEcCCCCEEEECCC-----CcEEecCCCccCC
Confidence            999986 56788 776333 2  44678999999999999975     7899999999985
>d1kj1a_ b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium sativum) [TaxId: 4682]} Back     information, alignment and structure
>d1jpca_ b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galanthus nivalis) [TaxId: 4670]} Back     information, alignment and structure
>d1dlpa2 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1b2pa_ b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1dlpa1 b.78.1.1 (A:1-115) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1dlpa1 b.78.1.1 (A:1-115) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1dlpa2 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1b2pa_ b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1kj1a_ b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium sativum) [TaxId: 4682]} Back     information, alignment and structure
>d1jpca_ b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galanthus nivalis) [TaxId: 4670]} Back     information, alignment and structure
>d1xd5a_ b.78.1.1 (A:) Gastrodianin (antifungal protein) {Gastrodia elata [TaxId: 91201]} Back     information, alignment and structure
>d2qj2a1 g.10.1.1 (A:36-126) Hepatocyte growth factor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure