Citrus Sinensis ID: 014859

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------
MSGILFHKYGGEDLDSYYPIRPECQADVPKAGKTLSARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDGRQVNDKQLKQCGKFERKNVKTGLPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNLDAKKACNEALKIQKKYLSKSKK
ccccEEccccccccccccccccccccccccccccccHHHHHHHHcccccccHHHHHHHHHccccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccEEEHHHHHHHHHHHccHHHHHHHHHHHHHcccccccccEEEccccccccccccHHHHHHHccHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcc
cccHHHHHccccccccccccccccccccccccccccHHHHHHHccccccEccHHHHHHHHcccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcc
msgilfhkyggedldsyypirpecqadvpkagktlsARRWHAAFSEDGHLDIAKVLRRIqrggihpsikGLVWEFLlgcydpnstfeERNQIRQQRRQQYAAWKTECqnivpiigsgkFITAAivtddgqslqdsnrdsldqgwhvdgaiSDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWvdndigyvqgmndICSPMIVLLENEADAFWCFEHTMRRLRENFrtntgmigvQSQLSTLSQIIRTIDPKLHqhledldggEYLFAFRMLMVLFRREFSFVDALYLWELMWAMeynpnifslyesnsstsdgrqvndkqLKQCGkferknvktglpdktsALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNLDAKKACNEALKIQKKYLSKSKK
msgilfhkyggedldsyYPIRPECQADVPKAGKTLSARRWHAafsedghldIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYesetnqaklwDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDGRQVNDKQLKQCGKferknvktglpdktsaLSVFLVASVLETknkkllreakglddVVKILADItgnldakkaCNEALKIqkkylskskk
MSGILFHKYGGEDLDSYYPIRPECQADVPKAGKTLSARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEErnqirqqrrqqYAAWKTECQNIVPIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDGRQVNDKQLKQCGKFERKNVKTGLPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNLDAKKACNEAlkiqkkylskskk
***ILFHKYGGEDLDSYYPIRPECQADVPKAGKTLSARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFE****I**QRRQQYAAWKTECQNIVPIIGSGKFITAAIVTD*************DQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLY***********************************TSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNLDAKKACNEALKI**********
*S*************************************WHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSD***************************TSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNLDAKKACNEALKIQKKYLSKS**
MSGILFHKYGGEDLDSYYPIRPECQADVPKAGKTLSARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEER************AWKTECQNIVPIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYES***********DKQLKQCGKFERKNVKTGLPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNLDAKKACNEALKIQKKYLSKSKK
******H*YGGEDLDSYYPIRPECQADVPKAGKTLSARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIGSGKFITAAIVTDDGQ*******************ISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDGRQVNDKQLKQCGKFERKNVKTGLPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNLDAKKACNEALKIQKKYLSKSK*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSGILFHKYGGEDLDSYYPIRPECQADVPKAGKTLSARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDGRQVNDKQLKQCGKFERKNVKTGLPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNLDAKKACNEALKIQKKYLSKSKK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query417 2.2.26 [Sep-21-2011]
Q9CXF4671 TBC1 domain family member yes no 0.585 0.363 0.336 2e-37
Q8TC07691 TBC1 domain family member yes no 0.585 0.353 0.340 1e-36
Q9UUH7743 GTPase-activating protein yes no 0.630 0.353 0.307 6e-28
P09379730 GTPase-activating protein yes no 0.594 0.339 0.288 6e-28
Q6FWI1745 GTPase-activating protein yes no 0.764 0.428 0.252 5e-27
Q8BYH7645 TBC1 domain family member no no 0.587 0.379 0.296 3e-26
Q9HA65648 TBC1 domain family member no no 0.594 0.382 0.306 7e-26
Q6BU76757 GTPase-activating protein yes no 0.613 0.338 0.269 8e-26
A1A5B6 742 TBC1 domain family member no no 0.568 0.319 0.268 1e-25
Q3MII6 688 TBC1 domain family member no no 0.568 0.344 0.268 3e-25
>sp|Q9CXF4|TBC15_MOUSE TBC1 domain family member 15 OS=Mus musculus GN=Tbc1d15 PE=1 SV=1 Back     alignment and function desciption
 Score =  157 bits (396), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 98/291 (33%), Positives = 151/291 (51%), Gaps = 47/291 (16%)

Query: 21  RPECQADVPKAGKTLSARRWHAAFSEDGHLDIAKVLR-RIQRGGIHPSIKGLVWEFLLGC 79
           RP  Q   P     +S   W+ +   +G L   + ++ +I RGG+  S++   W+FLLG 
Sbjct: 291 RPVVQRREP-----VSLEEWNKSLDPEGRLVAVESMKQKIFRGGLSHSLRKQAWKFLLGY 345

Query: 80  YDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIGSGKFITAAIVTDDGQSLQDSNRDS 139
           +  +ST EER Q+++Q+  +Y   K + +++                 + Q  ++S    
Sbjct: 346 FPWDSTKEERTQLQKQKTDEYFRMKLQWKSV----------------SEAQEKRNSR--- 386

Query: 140 LDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAK--LWDVLAIYSW 197
                     + D + L        I  DV RTDR+  FYE + N     L D+L  Y  
Sbjct: 387 ----------LRDYRSL--------IEKDVNRTDRTNKFYEGQDNPGLILLHDILMTYCM 428

Query: 198 VDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLS 257
            D D+GYVQGM+D+ SP++ ++ENE DAFWCF   M ++ +NF     M G+++QL  LS
Sbjct: 429 YDFDLGYVQGMSDLLSPLLYVMENEVDAFWCFASYMDQMHQNFEEQ--MQGMKTQLIQLS 486

Query: 258 QIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWA 308
            ++R +D     +LE  D G   F FR L++ F+REFSF+D L LWE+MW 
Sbjct: 487 TLLRLLDSGFCSYLESQDSGYLYFCFRWLLIRFKREFSFLDILRLWEVMWT 537
Acts as a GTPase activating protein for RAB7A. Does not act on RAB4, RAB5 or RAB6.
Mus musculus (taxid: 10090)
>sp|Q8TC07|TBC15_HUMAN TBC1 domain family member 15 OS=Homo sapiens GN=TBC1D15 PE=1 SV=2 Back     alignment and function description
>sp|Q9UUH7|GYP7_SCHPO GTPase-activating protein gyp7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gyp7 PE=3 SV=1 Back     alignment and function description
>sp|P09379|GYP7_YARLI GTPase-activating protein GYP7 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=GYP7 PE=3 SV=2 Back     alignment and function description
>sp|Q6FWI1|GYP7_CANGA GTPase-activating protein GYP7 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=GYP7 PE=3 SV=1 Back     alignment and function description
>sp|Q8BYH7|TBC17_MOUSE TBC1 domain family member 17 OS=Mus musculus GN=Tbc1d17 PE=2 SV=2 Back     alignment and function description
>sp|Q9HA65|TBC17_HUMAN TBC1 domain family member 17 OS=Homo sapiens GN=TBC1D17 PE=1 SV=2 Back     alignment and function description
>sp|Q6BU76|GYP7_DEBHA GTPase-activating protein GYP7 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=GYP7 PE=3 SV=2 Back     alignment and function description
>sp|A1A5B6|TBC25_MOUSE TBC1 domain family member 25 OS=Mus musculus GN=Tbc1d25 PE=1 SV=1 Back     alignment and function description
>sp|Q3MII6|TBC25_HUMAN TBC1 domain family member 25 OS=Homo sapiens GN=TBC1D25 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query417
297744173486 unnamed protein product [Vitis vinifera] 0.995 0.853 0.75 0.0
359480030451 PREDICTED: TBC1 domain family member 25- 1.0 0.924 0.725 0.0
255577934421 conserved hypothetical protein [Ricinus 0.956 0.947 0.739 0.0
224082860418 predicted protein [Populus trichocarpa] 0.954 0.952 0.725 0.0
297803220424 RabGAP/TBC domain-containing protein [Ar 0.973 0.957 0.693 1e-173
42567218424 RabGAP/TBC domain-containing protein [Ar 0.973 0.957 0.693 1e-173
356536848424 PREDICTED: TBC1 domain family member 15- 0.973 0.957 0.695 1e-173
356548075413 PREDICTED: TBC1 domain family member 15- 0.956 0.966 0.697 1e-172
42569183425 RabGAP/TBC domain-containing protein [Ar 0.961 0.943 0.675 1e-169
449463220418 PREDICTED: LOW QUALITY PROTEIN: TBC1 dom 0.928 0.925 0.680 1e-166
>gi|297744173|emb|CBI37143.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/424 (75%), Positives = 359/424 (84%), Gaps = 9/424 (2%)

Query: 3   GILFHKYGGEDLDSYYPIRPECQADVPK------AGKTLSARRWHAAFSEDGHLDIAKVL 56
           GIL       ++DS+Y IRPECQ+DVPK      AGKTLSARRWHAAFS+DGHLDI KVL
Sbjct: 62  GILMKNSANGEVDSFYAIRPECQSDVPKIRFKPRAGKTLSARRWHAAFSQDGHLDIEKVL 121

Query: 57  RRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIGS 116
           RRIQRGG+HPSIKG+VWEFLLGC+DPNSTF+ERN++RQQRRQQY A K ECQ + P+IGS
Sbjct: 122 RRIQRGGVHPSIKGVVWEFLLGCFDPNSTFDERNELRQQRRQQYGALKAECQKMAPVIGS 181

Query: 117 GKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSL 176
           GKFIT  IVT D  S        LD G HVD A+ DKKV+QW L LHQIGLDVVRTDR+L
Sbjct: 182 GKFITTPIVTVDATSTPSPLDSPLDDGGHVDDAVPDKKVIQWKLMLHQIGLDVVRTDRTL 241

Query: 177 VFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRL 236
           VFYESE NQAKLWDVLA+Y+W+DNDIGY QGMNDICSPM++L+ENEADAFWCFE  MRRL
Sbjct: 242 VFYESEANQAKLWDVLAVYAWMDNDIGYCQGMNDICSPMVILIENEADAFWCFERAMRRL 301

Query: 237 RENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSF 296
           RENFR +T  IGVQSQL TLS+II+ +DP+LHQHLEDLDGGEYLFAFRMLMVLFRREFSF
Sbjct: 302 RENFRVSTNSIGVQSQLGTLSEIIKAVDPQLHQHLEDLDGGEYLFAFRMLMVLFRREFSF 361

Query: 297 VDALYLWELMWAMEYNPNIFSLYESNSSTSD---GRQVNDKQLKQCGKFERKNVKTGLPD 353
           VDALYLWELMWAMEYNPNIFS YE +S+++D    +  N K LK+CGKFERKNVKTG  +
Sbjct: 362 VDALYLWELMWAMEYNPNIFSSYEESSASADKSSTQNTNGKMLKKCGKFERKNVKTGYKN 421

Query: 354 KTSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNLDAKKACNEALKIQKKYLS 413
           + S+L+VFLVASVL TKNK+ L+EAKGLDDVVKIL DITGNLDAKKACNEALK+ KKYLS
Sbjct: 422 QHSSLAVFLVASVLATKNKRFLKEAKGLDDVVKILGDITGNLDAKKACNEALKLHKKYLS 481

Query: 414 KSKK 417
           K+KK
Sbjct: 482 KAKK 485

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359480030|ref|XP_002272358.2| PREDICTED: TBC1 domain family member 25-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255577934|ref|XP_002529839.1| conserved hypothetical protein [Ricinus communis] gi|223530667|gb|EEF32540.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224082860|ref|XP_002306868.1| predicted protein [Populus trichocarpa] gi|222856317|gb|EEE93864.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297803220|ref|XP_002869494.1| RabGAP/TBC domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297315330|gb|EFH45753.1| RabGAP/TBC domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|42567218|ref|NP_194584.3| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|119935837|gb|ABM06008.1| At4g28550 [Arabidopsis thaliana] gi|332660104|gb|AEE85504.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356536848|ref|XP_003536945.1| PREDICTED: TBC1 domain family member 15-like [Glycine max] Back     alignment and taxonomy information
>gi|356548075|ref|XP_003542429.1| PREDICTED: TBC1 domain family member 15-like [Glycine max] Back     alignment and taxonomy information
>gi|42569183|ref|NP_179634.2| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|238479300|ref|NP_001154525.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|330251913|gb|AEC07007.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|330251914|gb|AEC07008.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449463220|ref|XP_004149332.1| PREDICTED: LOW QUALITY PROTEIN: TBC1 domain family member 15-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query417
TAIR|locus:2121353424 AT4G28550 [Arabidopsis thalian 0.947 0.931 0.682 1.8e-149
TAIR|locus:2038922425 AT2G20440 [Arabidopsis thalian 0.944 0.927 0.663 7.1e-148
TAIR|locus:2160145432 AT5G54780 [Arabidopsis thalian 0.940 0.907 0.586 1.1e-124
TAIR|locus:2136442436 AT4G27100 [Arabidopsis thalian 0.944 0.903 0.561 6.3e-124
TAIR|locus:2058228 745 AT2G43490 [Arabidopsis thalian 0.414 0.232 0.477 1.8e-60
TAIR|locus:2097573 720 AT3G59570 [Arabidopsis thalian 0.474 0.275 0.436 8e-59
TAIR|locus:2165710549 AT5G41940 [Arabidopsis thalian 0.290 0.220 0.455 6.4e-44
UNIPROTKB|A8K8E1445 TBC1D15 "TBC1 domain family, m 0.330 0.310 0.464 2.9e-41
TAIR|locus:2168591577 AT5G53570 [Arabidopsis thalian 0.290 0.209 0.447 4.3e-40
MGI|MGI:1913937671 Tbc1d15 "TBC1 domain family, m 0.330 0.205 0.464 5e-40
TAIR|locus:2121353 AT4G28550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1459 (518.7 bits), Expect = 1.8e-149, P = 1.8e-149
 Identities = 275/403 (68%), Positives = 329/403 (81%)

Query:     8 KYGGEDLDSYYPIRPECQADVPK------AGKTLSARRWHAAFSEDGHLDIAKVLRRIQR 61
             K GGEDL  +YP+R EC ADVP+      AGKTLSAR+WHAAF+ DGHLD+ +VLRRIQR
Sbjct:     9 KSGGEDLQGFYPVREECVADVPRTRFKSRAGKTLSARKWHAAFTGDGHLDMERVLRRIQR 68

Query:    62 GGIHPSIKGLVWEFLLGCYDPNSTFEEXXXXXXXXXXXYAAWKTECQNIVPIIGSGKFIT 121
             GGIHPSIKG VWEFLLG YDP+STFEE           Y AWK EC+N+VP++GSGKF+T
Sbjct:    69 GGIHPSIKGEVWEFLLGAYDPDSTFEERNKLRNHRREQYYAWKEECKNMVPLVGSGKFVT 128

Query:   122 AAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYES 181
              A+V +DGQ L++S+ D+  Q W V  AI+DK+VLQWML L QIGLDVVRTDR L FYES
Sbjct:   129 MAVVAEDGQPLEESSVDN--QEWVVKTAITDKRVLQWMLVLSQIGLDVVRTDRYLCFYES 186

Query:   182 ETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFR 241
             E+NQA+LWD+L+IY+W++ DIGYVQGMNDICSPMI+LLE+EADAFWCFE  MRRLRENFR
Sbjct:   187 ESNQARLWDILSIYTWLNPDIGYVQGMNDICSPMIILLEDEADAFWCFERAMRRLRENFR 246

Query:   242 TNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALY 301
             T    +GVQ+QL  LSQ+I+T+DP+LHQHLEDLDGGEYLFA RMLMVLFRREFSF+DALY
Sbjct:   247 TTATSMGVQTQLGMLSQVIKTVDPRLHQHLEDLDGGEYLFAIRMLMVLFRREFSFLDALY 306

Query:   302 LWELMWAMEYNPNIFSLYESNSSTSDGRQVNDKQLKQCGKFERKNVKTGLPDKTSALSVF 361
             LWELMWAMEYNPN F+ YE   + ++    + + LKQ GKFERK +K+G  ++ + L+VF
Sbjct:   307 LWELMWAMEYNPNKFASYEEPQNMNNSSGQDPRLLKQYGKFERKYIKSGQNEQHNTLAVF 366

Query:   362 LVASVLETKNKKLLREAKGLDDVVKILADITGNLDAKKACNEA 404
             +VASVLETKNK+LL+EAKGLDDVV+IL  I GNLDA+KAC EA
Sbjct:   367 VVASVLETKNKRLLKEAKGLDDVVQILGGIAGNLDARKACKEA 409
GO:0005097 "Rab GTPase activator activity" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0032313 "regulation of Rab GTPase activity" evidence=IEA
TAIR|locus:2038922 AT2G20440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2160145 AT5G54780 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2136442 AT4G27100 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2058228 AT2G43490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2097573 AT3G59570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2165710 AT5G41940 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|A8K8E1 TBC1D15 "TBC1 domain family, member 15, isoform CRA_d" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
TAIR|locus:2168591 AT5G53570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:1913937 Tbc1d15 "TBC1 domain family, member 15" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query417
pfam00566206 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain 3e-38
smart00164216 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16 4e-38
COG5210496 COG5210, COG5210, GTPase-activating protein [Gener 2e-29
>gnl|CDD|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain Back     alignment and domain information 
 Score =  136 bits (345), Expect = 3e-38
 Identities = 54/186 (29%), Positives = 88/186 (47%), Gaps = 4/186 (2%)

Query: 135 SNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAI 194
               S  +        S    L+      QI  DV RT     F+++   Q +L  +L  
Sbjct: 12  LGNLSESKQRDSVSQYSKLLKLEDSPDEEQIEKDVPRTFPHHFFFKNGEGQQQLRRILKA 71

Query: 195 YSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRR-LRENFRTNTGMIGVQSQL 253
           YS  + D+GY QGMN I +P+++++ +E +AFWCF   +   LR+ F  +    G+Q  L
Sbjct: 72  YSIYNPDVGYCQGMNFIAAPLLLVVLDEEEAFWCFVSLLEYLLRDFFLPS--FPGLQRDL 129

Query: 254 STLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNP 313
               ++++  DP+L++HL+ L     LFA +  + LF RE      L LW+L        
Sbjct: 130 YVFEELLKKHDPELYKHLQKLGLDPSLFASKWFLTLFARELPLETVLRLWDLFLE-GGKF 188

Query: 314 NIFSLY 319
            +F + 
Sbjct: 189 FLFRVA 194

Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, implies that these domains are GTPase activator proteins of Rab-like small GTPases. Length = 206
>gnl|CDD|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information
>gnl|CDD|227535 COG5210, COG5210, GTPase-activating protein [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 417
KOG4567370 consensus GTPase-activating protein [General funct 100.0
KOG2058436 consensus Ypt/Rab GTPase activating protein [Intra 100.0
KOG1092484 consensus Ypt/Rab-specific GTPase-activating prote 100.0
smart00164199 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable R 100.0
KOG2224781 consensus Uncharacterized conserved protein, conta 100.0
KOG2223586 consensus Uncharacterized conserved protein, conta 100.0
KOG2197488 consensus Ypt/Rab-specific GTPase-activating prote 100.0
PF00566214 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR00 100.0
COG5210496 GTPase-activating protein [General function predic 100.0
KOG1093 725 consensus Predicted protein kinase (contains TBC a 99.97
KOG2222 848 consensus Uncharacterized conserved protein, conta 99.97
KOG1091 625 consensus Ypt/Rab-specific GTPase-activating prote 99.96
KOG4347 671 consensus GTPase-activating protein VRP [General f 99.95
KOG4436 948 consensus Predicted GTPase activator NB4S/EVI5 (co 99.95
KOG2595395 consensus Predicted GTPase activator protein [Sign 99.93
KOG1102397 consensus Rab6 GTPase activator GAPCenA and relate 99.9
KOG2221267 consensus PDZ-domain interacting protein EPI64, co 99.83
KOG3636 669 consensus Uncharacterized conserved protein, conta 99.75
KOG4436 948 consensus Predicted GTPase activator NB4S/EVI5 (co 99.54
KOG1648813 consensus Uncharacterized conserved protein, conta 99.45
KOG2801 559 consensus Probable Rab-GAPs [Intracellular traffic 98.84
PF149611296 BROMI: Broad-minded protein 97.23
KOG2224781 consensus Uncharacterized conserved protein, conta 80.78
>KOG4567 consensus GTPase-activating protein [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=3.9e-46  Score=345.35  Aligned_cols=311  Identities=25%  Similarity=0.434  Sum_probs=256.8

Q ss_pred             HHHHHhhccCC-CccHHHHHHHHHhCCCC--CCchhhhchhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 014859           38 RRWHAAFSEDG-HLDIAKVLRRIQRGGIH--PSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPII  114 (417)
Q Consensus        38 ~~W~~~l~~~~-~id~~~l~~~l~~~GIP--~~lR~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~  114 (417)
                      +..++.++... .+|..+ ++.++..|+|  ..+|+.+|+++||++|++.+.  |...+.+++..|..+.++..   ..+
T Consensus        10 ~~~edvl~~~~~~id~ke-lr~~~~~g~p~~~~lR~~~WkllL~Yl~~er~~--w~s~La~~R~~Y~q~i~e~v---~ep   83 (370)
T KOG4567|consen   10 KSIEDVLNPADDTIDLKE-LRKLCFYGVPDDASLRPLVWKLLLGYLPPERSK--WTSFLAKKRSLYKQFIEEIV---DEP   83 (370)
T ss_pred             hhHHHhhccccchhhHHH-HHHHhhcCCCCccchhHhHHHHHHhhcChhhhh--hHHHHHHHHHHHHHHHHHhc---cCc
Confidence            35556665543 378877 7788888999  799999999999999999864  67888999999999988743   222


Q ss_pred             CCCccccccccccCCCccCCCCcccccCCCCCCcccchHHHHHHHHHHhHHhhcccCCCCCCcCCCChh-----------
Q 014859          115 GSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESET-----------  183 (417)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~~~~~~~~~~qI~~Dv~RT~~~~~~f~~~~-----------  183 (417)
                      |.  .......++.....++|.+..+++.|+        ...+..+.+.||++||.||.|+..+|+...           
T Consensus        84 g~--~~~~~~v~~~D~~~dhPls~~~~sdwn--------~ff~d~e~l~QIdrDvrr~~pdi~ff~~~~~~p~~~~~~~~  153 (370)
T KOG4567|consen   84 GK--KDNSKKVDSNDTDEDHPLSLGPTSDWN--------TFFKDCEVLLQIDRDVRRTHPDISFFQLASSYPCRQGMDSR  153 (370)
T ss_pred             cc--cccccccccCcccccCCCCCCchhhHH--------HHhhhhHHHHHHHHHHHHhCcchHhhhhccccccccchhhH
Confidence            21  111111222224566777766666663        444555788999999999999999887520           


Q ss_pred             ----------------hHHHHHHHHHHHHHhcCCCCcCCChhHHHHHHHHhcC----------CHHHHHHHHHHHHHHhh
Q 014859          184 ----------------NQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLE----------NEADAFWCFEHTMRRLR  237 (417)
Q Consensus       184 ----------------~~~~L~rIL~~y~~~~p~igY~QGm~~Iaa~ll~~~~----------~E~~aF~~f~~l~~~~~  237 (417)
                                      ......|||..||..||.|||+||||+|+||+++|+.          .|+|||+||+.||..++
T Consensus       154 ~~i~~~q~~~~n~~gl~~~~~erilfiyAKLNpGi~YVQGMNEIlaPiYYVfa~Dpd~e~~~~aEaDaFFCF~~LMseir  233 (370)
T KOG4567|consen  154 RRINASQEAGRNRLGLTRFAAERILFIYAKLNPGIGYVQGMNEILAPIYYVFANDPDEENRAYAEADAFFCFTQLMSEIR  233 (370)
T ss_pred             hhhhhhhHhhhcccchhhhHHHHHHHHHhhcCCcchHHhhhHHHhhhhheeeccCCchhhHHhhhhhHHHHHHHHHHHHH
Confidence                            1233578999999999999999999999999999984          38999999999999999


Q ss_pred             hcccCC--CCchhHHHHHHHHHHHHHHHCHHHHHHHHhCCCCccchHHHHHHHhhcccCChhhHHHHHHHHhhcccCCCc
Q 014859          238 ENFRTN--TGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNI  315 (417)
Q Consensus       238 ~~~~~~--~~~~~~~~~~~~~~~lL~~~~P~L~~hL~~~~i~~~~f~~~W~~tlF~~~l~~~~v~riWD~~l~~~~~~~~  315 (417)
                      ++|..+  ...-|++..+..+..+|+.+|-+||.||++.+|.|..|+++|+++|++.+||++++++|||.+++....   
T Consensus       234 Dnf~k~LDdS~~GI~~~Msr~~~~lk~~D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r---  310 (370)
T KOG4567|consen  234 DNFIKTLDDSVGGIHFLMSRLSELLKKHDEELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR---  310 (370)
T ss_pred             HHHHHhccccccchHHHHHHHHHHHHHhhHHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh---
Confidence            999764  445588888999999999999999999999999999999999999999999999999999999987543   


Q ss_pred             hhhhccCCCCCCCcccchhhhhhhchhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhhhcCCC
Q 014859          316 FSLYESNSSTSDGRQVNDKQLKQCGKFERKNVKTGLPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNL  395 (417)
Q Consensus       316 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ail~~~r~~il~~~~~~~~i~~~l~~~~~~~  395 (417)
                                                              .+|++++|+|||...|+.||+.  ||+..+++|++.+ ..
T Consensus       311 ----------------------------------------fd~Ll~iCcsmlil~Re~il~~--DF~~nmkLLQ~yp-~t  347 (370)
T KOG4567|consen  311 ----------------------------------------FDFLLYICCSMLILVRERILEG--DFTVNMKLLQNYP-TT  347 (370)
T ss_pred             ----------------------------------------hHHHHHHHHHHHHHHHHHHHhc--chHHHHHHHhcCC-CC
Confidence                                                    3489999999999999999994  9999999999999 88


Q ss_pred             CHHHHHHHHHHHHHH
Q 014859          396 DAKKACNEALKIQKK  410 (417)
Q Consensus       396 d~~~il~~A~~l~~~  410 (417)
                      |+..+++.|..|..+
T Consensus       348 di~~~l~~A~~Lr~~  362 (370)
T KOG4567|consen  348 DISKMLAVADSLRDK  362 (370)
T ss_pred             CHHHHHHHHHHHHhc
Confidence            999999999998843

>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [] Back     alignment and domain information
>COG5210 GTPase-activating protein [General function prediction only] Back     alignment and domain information
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only] Back     alignment and domain information
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only] Back     alignment and domain information
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only] Back     alignment and domain information
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only] Back     alignment and domain information
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only] Back     alignment and domain information
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only] Back     alignment and domain information
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only] Back     alignment and domain information
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14961 BROMI: Broad-minded protein Back     alignment and domain information
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query417
2g77_A410 Crystal Structure Of Gyp1 Tbc Domain In Complex Wit 3e-13
1fkm_A396 Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p 2e-12
3dzx_A346 Crystal Structure Of The Rabgap Domain Of Human Tbc 7e-11
3qye_A331 Crystal Structure Of Human Tbc1d1 Rabgap Domain Len 1e-08
2qfz_A345 Crystal Structure Of Human Tbc1 Domain Family Membe 2e-08
3qyb_A301 X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rab 8e-08
3hzj_A310 Crystal Structure Of The Rabgap Domain Of The Rabga 8e-05
2qq8_A334 Crystal Structure Of The Putative Rabgap Domain Of 4e-04
>pdb|2G77|A Chain A, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 410 Back     alignment and structure 
Iteration: 1

 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 30/170 (17%)
Query: 163 HQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMI------ 216
           HQI +D+ RT+  +  Y+ ++ Q  L  +L +++      GYVQG+ND+ +P        
Sbjct: 108 HQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTE 167
Query: 217 ----------------------VLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLS 254
                                  + + EAD FWC    + ++ +N+    G  G+  Q+ 
Sbjct: 168 YLPPSQIDDVKIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYIH--GQPGILRQVK 225
Query: 255 TLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWE 304
            LSQ+++ ID  L+ H ++       FAFR +  L  REF     + +W+
Sbjct: 226 NLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWD 275
>pdb|1FKM|A Chain A, Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p Length = 396 Back     alignment and structure
>pdb|3DZX|A Chain A, Crystal Structure Of The Rabgap Domain Of Human Tbc1d22b Length = 346 Back     alignment and structure
>pdb|3QYE|A Chain A, Crystal Structure Of Human Tbc1d1 Rabgap Domain Length = 331 Back     alignment and structure
>pdb|2QFZ|A Chain A, Crystal Structure Of Human Tbc1 Domain Family Member 22a Length = 345 Back     alignment and structure
>pdb|3QYB|A Chain A, X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rabgap Domain Length = 301 Back     alignment and structure
>pdb|3HZJ|A Chain A, Crystal Structure Of The Rabgap Domain Of The Rabgap1l Protein Length = 310 Back     alignment and structure
>pdb|2QQ8|A Chain A, Crystal Structure Of The Putative Rabgap Domain Of Human Tbc1 Domain Family Member 14 Length = 334 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query417
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 5e-66
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 3e-53
2qq8_A334 TBC1 domain family member 14; structural genomics 1e-26
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 2e-25
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 2e-23
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 1e-22
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396 Back     alignment and structure
 Score =  214 bits (547), Expect = 5e-66
 Identities = 63/317 (19%), Positives = 117/317 (36%), Gaps = 79/317 (24%)

Query: 33  KTLSAR--RWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERN 90
            ++  R  ++     +   ++    LR+I   GI    + +VW+ L+G    N+    + 
Sbjct: 2   NSIIQRISKFDNILKDKTIINQQD-LRQISWNGIPKIHRPVVWKLLIGYLPVNTK--RQE 58

Query: 91  QIRQQRRQQYAAWKTECQNIVPIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAI 150
              Q++R++Y                                         +    D   
Sbjct: 59  GFLQRKRKEYRDSL-------------------------------------KHTFSDQHS 81

Query: 151 SDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMND 210
            D          HQI +D+ RT+  +  Y+ ++ Q  L  +L +++      GYVQG+ND
Sbjct: 82  RDIPTW------HQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGIND 135

Query: 211 ICSPMIVLL----------------------------ENEADAFWCFEHTMRRLRENFRT 242
           + +P                                 + EAD FWC    + ++ +N+  
Sbjct: 136 LVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYIH 195

Query: 243 NTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYL 302
             G  G+  Q+  LSQ+++ ID  L+ H ++       FAFR +  L  REF     + +
Sbjct: 196 --GQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRM 253

Query: 303 WELMWAMEYNPNIFSLY 319
           W+   + E +  + S Y
Sbjct: 254 WDTYLS-ETSQEVTSSY 269
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345 Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Length = 334 Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Length = 294 Back     alignment and structure
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Length = 310 Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Length = 331 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query417
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 100.0
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 100.0
2qq8_A334 TBC1 domain family member 14; structural genomics 100.0
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 100.0
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 100.0
4hl4_A292 TBC1 domain family member 20; rabgap, RAB1B, hydro 100.0
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 100.0
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Back     alignment and structure
Probab=100.00  E-value=8e-52  Score=409.67  Aligned_cols=289  Identities=22%  Similarity=0.412  Sum_probs=248.3

Q ss_pred             CCCHHHHHHhhccCCCccHHHHHHHHHhCCCCCCchhhhchhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 014859           34 TLSARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPI  113 (417)
Q Consensus        34 ~l~~~~W~~~l~~~~~id~~~l~~~l~~~GIP~~lR~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~  113 (417)
                      .-+.++|.++++.. .+|.++ ++.++++|||+.+|+.||++++|++|.+.  ++|.....+++..|.++++++..... 
T Consensus        23 ~~r~~kw~~~l~~~-~~d~~~-Lr~l~~~GiP~~~R~~vW~~llg~~p~~~--~~~~~~l~~~~~~Y~~l~~~~~~~~~-   97 (345)
T 2qfz_A           23 ASRLDKFKQLLAGP-NTDLEE-LRRLSWSGIPKPVRPMTWKLLSGYLPANV--DRRPATLQRKQKEYFAFIEHYYDSRN-   97 (345)
T ss_dssp             -CHHHHHHHHHHCS-BCCHHH-HHHHHTTCCCGGGHHHHHHHHTTSSCSBG--GGHHHHHHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHcCC-CCCHHH-HHHHHHCCCCHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHHHHHHHHHhhcCCC-
Confidence            45678999999764 478888 55567899999999999999999998876  46777888899999999998642100 


Q ss_pred             cCCCccccccccccCCCccCCCCcccccCCCCCCcccchHHHHHHHHHHhHHhhcccCCCCCCcCCCChhhHHHHHHHHH
Q 014859          114 IGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLA  193 (417)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~~~~~~~~~~qI~~Dv~RT~~~~~~f~~~~~~~~L~rIL~  193 (417)
                                          +                     ....+..++|++||.||+|+ ++|+.+..++.|.|||.
T Consensus        98 --------------------~---------------------~~~~~~~~~I~~Dv~RT~p~-~~F~~~~~~~~L~rIL~  135 (345)
T 2qfz_A           98 --------------------D---------------------EVHQDTYRQIHIDIPRMSPE-ALILQPKVTEIFERILF  135 (345)
T ss_dssp             --------------------------------------------CHHHHHHHHHHGGGCSCH-HHHTSHHHHHHHHHHHH
T ss_pred             --------------------c---------------------cchHHHHHHHHHhCcccCCc-cccCCchHHHHHHHHHH
Confidence                                0                     00114578999999999999 99999999999999999


Q ss_pred             HHHHhcCCCCcCCChhHHHHHHHHhcC------------------------CHHHHHHHHHHHHHHhhhcccCCCCchhH
Q 014859          194 IYSWVDNDIGYVQGMNDICSPMIVLLE------------------------NEADAFWCFEHTMRRLRENFRTNTGMIGV  249 (417)
Q Consensus       194 ~y~~~~p~igY~QGm~~Iaa~ll~~~~------------------------~E~~aF~~f~~l~~~~~~~~~~~~~~~~~  249 (417)
                      +|+.+||++|||||||+||++|++++.                        +|++|||||+.+|++++++|.  .+.+++
T Consensus       136 ~ya~~~p~vgY~QGm~~i~a~ll~v~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~y~--~~~~~i  213 (345)
T 2qfz_A          136 IWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWCMSKLLDGIQDNYT--FAQPGI  213 (345)
T ss_dssp             HHHHHCTTTCCCTTHHHHHHHHHHHHHGGGCC-----CCCCTTSCHHHHHHHHHHHHHHHHHHHHTSGGGSS--TTCHHH
T ss_pred             HHHHHCCCCCcccChHHHHHHHHHHHHhhhcccccccccchhhhhhhhhhhHHHHHHHHHHHHHHccccccc--cCcHHH
Confidence            999999999999999999999998874                        289999999999999987776  346799


Q ss_pred             HHHHHHHHHHHHHHCHHHHHHHHhCCCCccchHHHHHHHhhcccCChhhHHHHHHHHhhcccCCCchhhhccCCCCCCCc
Q 014859          250 QSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDGR  329 (417)
Q Consensus       250 ~~~~~~~~~lL~~~~P~L~~hL~~~~i~~~~f~~~W~~tlF~~~l~~~~v~riWD~~l~~~~~~~~f~~~~~~~~~~~~~  329 (417)
                      ...+..++.+|+.++|+||+||.+.|+++.+|+++||+|+|++++|++.++||||.+|++|...                
T Consensus       214 ~~~~~~l~~ll~~~dP~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~----------------  277 (345)
T 2qfz_A          214 QMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGF----------------  277 (345)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTT----------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCCh----------------
Confidence            9999999999999999999999999999999999999999999999999999999999987542                


Q ss_pred             ccchhhhhhhchhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhhhcCC----CCHHHHHHHHH
Q 014859          330 QVNDKQLKQCGKFERKNVKTGLPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGN----LDAKKACNEAL  405 (417)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ail~~~r~~il~~~~~~~~i~~~l~~~~~~----~d~~~il~~A~  405 (417)
                                                ..|++|+|+|+|...|+.||+ +.+++++++++++++..    .|++.+++.|.
T Consensus       278 --------------------------~~~~~~v~~AiL~~~~~~ll~-~~d~~~il~~L~~~p~~~~~~~di~~ll~~A~  330 (345)
T 2qfz_A          278 --------------------------SHFHLYVCAAFLVRWRKEILE-EKDFQELLLFLQNLPTAHWDDEDISLLLAEAY  330 (345)
T ss_dssp             --------------------------TTHHHHHHHHHHHHTHHHHHH-CCCHHHHHHHHTSCSCTTCCHHHHHHHHHHHH
T ss_pred             --------------------------hHHHHHHHHHHHHHHHHHHHh-hCCHHHHHHHHHcCCCcCCchhHHHHHHHHHH
Confidence                                      126789999999999999998 47999999999999965    37999999999


Q ss_pred             HHHHHHHHh
Q 014859          406 KIQKKYLSK  414 (417)
Q Consensus       406 ~l~~~~~~~  414 (417)
                      .++.+|...
T Consensus       331 ~l~~~~~~~  339 (345)
T 2qfz_A          331 RLKFAFADA  339 (345)
T ss_dssp             HHHHHC---
T ss_pred             HHHHHHHhh
Confidence            999988653
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Back     alignment and structure
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Back     alignment and structure
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A* Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 417
d1fkma1194 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p { 4e-22
d1fkma2188 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p { 9e-18
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 Back     information, alignment and structure

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 91.1 bits (225), Expect = 4e-22
 Identities = 40/230 (17%), Positives = 79/230 (34%), Gaps = 74/230 (32%)

Query: 39  RWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQ 98
           ++     +   ++    LR+I   GI    + +VW+ L+G    N+  +E    R+++  
Sbjct: 9   KFDNILKDKTIINQQD-LRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEY 67

Query: 99  QYAAWKTECQNIVPIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQW 158
           + +   T                        Q  +D                        
Sbjct: 68  RDSLKHTFSD---------------------QHSRDIPT--------------------- 85

Query: 159 MLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMI-- 216
               HQI +D+ RT+  +  Y+ ++ Q  L  +L +++      GYVQG+ND+ +P    
Sbjct: 86  ---WHQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFET 142

Query: 217 --------------------------VLLENEADAFWCFEHTMRRLRENF 240
                                      + + EAD FWC    + ++ +N+
Sbjct: 143 FLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNY 192
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query417
d1fkma1194 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 99.98
d1fkma2188 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 99.84
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=7.4e-33  Score=249.68  Aligned_cols=159  Identities=24%  Similarity=0.482  Sum_probs=134.6

Q ss_pred             HHHHHHhhccCCCccHHHHHHHHHhCCCCCCchhhhchhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 014859           37 ARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIGS  116 (417)
Q Consensus        37 ~~~W~~~l~~~~~id~~~l~~~l~~~GIP~~lR~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~  116 (417)
                      .++|.+++.+.+.++.++ ++.++++|||+.+|+.||++|+|++|.+.+  +|.....++++.|..+........     
T Consensus         7 i~~~~~~l~~~~~i~~~~-lr~l~~~Gip~~lR~~vW~~llg~~~~~~~--~~~~~~~~~~~~y~~~~~~~~~~~-----   78 (194)
T d1fkma1           7 ISKFDNILKDKTIINQQD-LRQISWNGIPKIHRPVVWKLLIGYLPVNTK--RQEGFLQRKRKEYRDSLKHTFSDQ-----   78 (194)
T ss_dssp             HHHHHHHHSSCSBCCHHH-HHHHHTTCCCGGGHHHHHHHHTTCSCSBGG--GHHHHHHHHHHHHHHHHHHTSSSS-----
T ss_pred             HHHHHHHhcccCCCCHHH-HHHHHHcCCChHHHHHHHHHHHhhcCCchh--hHHHHHHHHhhhhhhhhhhhhhcc-----
Confidence            468999998888889988 556778999999999999999999999886  456677888899988777642100     


Q ss_pred             CccccccccccCCCccCCCCcccccCCCCCCcccchHHHHHHHHHHhHHhhcccCCCCCCcCCCChhhHHHHHHHHHHHH
Q 014859          117 GKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYS  196 (417)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~~~~~~~~~~qI~~Dv~RT~~~~~~f~~~~~~~~L~rIL~~y~  196 (417)
                                       .                 .    ...+..++|++||.||+|++++|..+.+++.|+|||.+|+
T Consensus        79 -----------------~-----------------~----~~~~~~~~I~~Dv~RT~~~~~~f~~~~~~~~L~rIL~~ya  120 (194)
T d1fkma1          79 -----------------H-----------------S----RDIPTWHQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWA  120 (194)
T ss_dssp             -----------------C-----------------S----THHHHHHHHHHHGGGSSTTSGGGGSHHHHHHHHHHHHHHH
T ss_pred             -----------------c-----------------c----cchHHHHHHHHHHHhcCCcccccccchhHHHHHHHHHHHH
Confidence                             0                 0    0124578999999999999999999999999999999999


Q ss_pred             HhcCCCCcCCChhHHHHHHHHhcC----------------------------CHHHHHHHHHHHHHHhhhccc
Q 014859          197 WVDNDIGYVQGMNDICSPMIVLLE----------------------------NEADAFWCFEHTMRRLRENFR  241 (417)
Q Consensus       197 ~~~p~igY~QGm~~Iaa~ll~~~~----------------------------~E~~aF~~f~~l~~~~~~~~~  241 (417)
                      .+||++|||||||+|||+|++++.                            .|++|||||+.+|.+++++|.
T Consensus       121 ~~np~~gY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ead~F~~f~~lm~~i~d~y~  193 (194)
T d1fkma1         121 IRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYI  193 (194)
T ss_dssp             HHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGGGGGSS
T ss_pred             HHCCCCCeeecchHHHHHHHHHHhhhhhhhhhhhhhhhcchhhhhhhhhhhhHHHHHHHHHHHHHHhhhccCC
Confidence            999999999999999999999862                            289999999999999888775
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure