Citrus Sinensis ID: 014861

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------
MAPNNNMSQEEEARQKAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGAFGDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSLAAAVMSLSYSTIAWVVPLEKGVEPDVDYSYNAKSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWKGVVVAYIIVAICYFPVALVGYYIFGNTVEDNILLTLEKPIWIVAAANLFVVVHVIGSYQIFAMPVFDMIETFLVKQLKFTPSFMLRLVTRSLYVAFTMIVAISVPFFGSLMGFFGGFALAPTSYYFCIVLGVLLMILAPIGGLRSIIMSAKNYEFFS
ccccccccHHHHHHHccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcHHHccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHEEEEcEEccccccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
ccccccccccccHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcccccEEEEEHHHHHHHHHHHEEEEEHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHEHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
mapnnnmsQEEEARQKAIddwlpitssrnaKWWYSAFHNVTAMVGAGVLSLPyamshlgwgpGIAVLIISWVVTLYTLWQMVEMhemvpgkrfdryhelgqgafgdklgLWIVVPQQVIVEVSTNIIYMVtggksfkkaHEVIcpsckeikTSYWIMIFAAIHFVLshlpnfnsiSVVSLAAAVMSLSYSTIAWvvplekgvepdvdysynakstTDAMFNFFTALGDVAFAYAGHNVVLEIQatipstpekpskgpmwkGVVVAYIIVAICYFPVALVGYYIFGNTVEDNILLTLEKPIWIVAAANLFVVVHVIGSYQIFAMPVFDMIETFLVKQLKFTPSFMLRLVTRSLYVAFTMIVAISVpffgslmgffggfalaptSYYFCIVLGVLLMILAPIGGLRSIIMSAKNYEFFS
mapnnnmsQEEEARQKAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGAFGDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSLAAAVMSLSYSTIAWVVPLEKGVEPDVDYSYNAKSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATipstpekpskgpMWKGVVVAYIIVAICYFPVALVGYYIFGNTVEDNILLTLEKPIWIVAAANLFVVVHVIGSYQIFAMPVFDMIETFLVKQLKFTPSFMLRLVTRSLYVAFTMIVAISVPFFGSLMGFFGGFALAPTSYYFCIVLGVLLMILAPIGGLRSIIMSAKNYEFFS
MAPNNNMSQEEEARQKAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGAFGDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSLAAAVMSLSYSTIAWVVPLEKGVEPDVDYSYNAKSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWKGvvvayiivaiCYFPVALVGYYIFGNTVEDNILLTLEKPIWIVAAANLFVVVHVIGSYQIFAMPVFDMIETFLVKQLKFTPSFMLRLVTRSLYVAFTMIVAISVPffgslmgffggfALAPTSYYFCIVLGVLLMILAPIGGLRSIIMSAKNYEFFS
*****************IDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGAFGDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSLAAAVMSLSYSTIAWVVPLEKGVEPDVDYSYNAKSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATI**********PMWKGVVVAYIIVAICYFPVALVGYYIFGNTVEDNILLTLEKPIWIVAAANLFVVVHVIGSYQIFAMPVFDMIETFLVKQLKFTPSFMLRLVTRSLYVAFTMIVAISVPFFGSLMGFFGGFALAPTSYYFCIVLGVLLMILAPIGGLRSIIMSAKNYE***
***************************RNAKWWYSAFHNVTAMVGAGVLSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGAFGDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSLAAAVMSLSYSTIAWVVPLEKGVEPDVDYSYNAKSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIP*******KGPMWKGVVVAYIIVAICYFPVALVGYYIFGNTVEDNILLTLEKPIWIVAAANLFVVVHVIGSYQIFAMPVFDMIETFLVKQLKFTPSFMLRLVTRSLYVAFTMIVAISVPFFGSLMGFFGGFALAPTSYYFCIVLGVLLMILAPIGGLRSIIMSAKNYEFFS
***************KAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGAFGDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSLAAAVMSLSYSTIAWVVPLEKGVEPDVDYSYNAKSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWKGVVVAYIIVAICYFPVALVGYYIFGNTVEDNILLTLEKPIWIVAAANLFVVVHVIGSYQIFAMPVFDMIETFLVKQLKFTPSFMLRLVTRSLYVAFTMIVAISVPFFGSLMGFFGGFALAPTSYYFCIVLGVLLMILAPIGGLRSIIMSAKNYEFFS
******************DDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGAFGDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSLAAAVMSLSYSTIAWVVPLEKGVEPDVDYSYNAKSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWKGVVVAYIIVAICYFPVALVGYYIFGNTVEDNILLTLEKPIWIVAAANLFVVVHVIGSYQIFAMPVFDMIETFLVKQLKFTPSFMLRLVTRSLYVAFTMIVAISVPFFGSLMGFFGGFALAPTSYYFCIVLGVLLMILAPIGGLRSIIMSAKNYEFFS
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
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MAPNNNMSQEEEARQKAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGAFGDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSLAAAVMSLSYSTIAWVVPLEKGVEPDVDYSYNAKSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWKGVVVAYIIVAICYFPVALVGYYIFGNTVEDNILLTLEKPIWIVAAANLFVVVHVIGSYQIFAMPVFDMIETFLVKQLKFTPSFMLRLVTRSLYVAFTMIVAISVPFFGSLMGFFGGFALAPTSYYFCIVLGVLLMILAPIGGLRSIIMSAKNYEFFS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query417 2.2.26 [Sep-21-2011]
Q9FKS8446 Lysine histidine transpor yes no 0.997 0.932 0.699 0.0
Q9LRB5441 Lysine histidine transpor no no 0.992 0.938 0.724 0.0
Q9SR44441 Lysine histidine transpor no no 0.983 0.929 0.739 1e-179
Q9C733453 Lysine histidine transpor no no 0.978 0.900 0.684 1e-172
O22719451 Lysine histidine transpor no no 0.985 0.911 0.583 1e-147
Q9SS86455 Lysine histidine transpor no no 0.980 0.898 0.578 1e-143
Q9C6M2440 Lysine histidine transpor no no 0.976 0.925 0.548 1e-133
Q9C9J0448 Lysine histidine transpor no no 0.978 0.910 0.566 1e-128
Q9SX98519 Lysine histidine transpor no no 0.834 0.670 0.378 3e-68
Q84WE9478 Lysine histidine transpor no no 0.916 0.799 0.313 5e-50
>sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1 Back     alignment and function desciption
 Score =  649 bits (1674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/442 (69%), Positives = 362/442 (81%), Gaps = 26/442 (5%)

Query: 2   APNNNMSQEEE---ARQKAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMSHL 58
           AP+++   +E+   ARQK I+DWLPITSSRNAKWWYSAFHNVTAMVGAGVL LPYAMS L
Sbjct: 5   APHDDHQDDEKLAAARQKEIEDWLPITSSRNAKWWYSAFHNVTAMVGAGVLGLPYAMSQL 64

Query: 59  GWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGAFGDKLGLWIVVPQQV 118
           GWGPGIAVL++SWV+TLYTLWQMVEMHEMVPGKRFDRYHELGQ AFG+KLGL+IVVPQQ+
Sbjct: 65  GWGPGIAVLVLSWVITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQL 124

Query: 119 IVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVV 178
           IVE+   I+YMVTGGKS KK HE++C  CK IK +Y+IMIFA++HFVLSHLPNFNSIS V
Sbjct: 125 IVEIGVCIVYMVTGGKSLKKFHELVCDDCKPIKLTYFIMIFASVHFVLSHLPNFNSISGV 184

Query: 179 SLAAAVMSLSYSTIAWVVPLEKGVEPDVDYSYNAKSTTDAMFNFFTALGDVAFAYAGHNV 238
           SLAAAVMSLSYSTIAW     KGV+ DV Y Y AK+T   +FNFF+ LGDVAFAYAGHNV
Sbjct: 185 SLAAAVMSLSYSTIAWASSASKGVQEDVQYGYKAKTTAGTVFNFFSGLGDVAFAYAGHNV 244

Query: 239 VLEIQATIPSTPEKPSKGPMWKGVVVAYIIVAICYFPVALVGYYIFGNTVEDNILLTLEK 298
           VLEIQATIPSTPEKPSKGPMW+GV+VAYI+VA+CYFPVALVGYYIFGN VEDNIL++L+K
Sbjct: 245 VLEIQATIPSTPEKPSKGPMWRGVIVAYIVVALCYFPVALVGYYIFGNGVEDNILMSLKK 304

Query: 299 PIWIVAAANLFVVVHVIGSYQIFAMPVFDMIETFLVKQLKFTPSFMLRLVTRSLYVAFTM 358
           P W++A AN+FVV+HVIGSYQI+AMPVFDM+ET LVK+L F P+  LR   R+ YVA TM
Sbjct: 305 PAWLIATANIFVVIHVIGSYQIYAMPVFDMMETLLVKKLNFRPTTTLRFFVRNFYVAATM 364

Query: 359 IVAISVPFFGSLMGFFGGFALAPTSYYF-----------------------CIVLGVLLM 395
            V ++ PFFG L+ FFGGFA APT+Y+                        CIV G+ LM
Sbjct: 365 FVGMTFPFFGGLLAFFGGFAFAPTTYFLPCVIWLAIYKPKKYSLSWWANWVCIVFGLFLM 424

Query: 396 ILAPIGGLRSIIMSAKNYEFFS 417
           +L+PIGGLR+I++ AK Y+F+S
Sbjct: 425 VLSPIGGLRTIVIQAKGYKFYS 446
Amino acid-proton symporter. Transporter with a broad specificity for histidine, lysine, glutamic acid, alanine, serine, proline and glycine. Involved in both apoplastic transport of amino acids in leaves and their uptake by roots.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LRB5|LHT2_ARATH Lysine histidine transporter 2 OS=Arabidopsis thaliana GN=LHT2 PE=1 SV=1 Back     alignment and function description
>sp|Q9SR44|LHTL2_ARATH Lysine histidine transporter-like 2 OS=Arabidopsis thaliana GN=At1g67640 PE=2 SV=1 Back     alignment and function description
>sp|Q9C733|LHTL1_ARATH Lysine histidine transporter-like 1 OS=Arabidopsis thaliana GN=At1g48640 PE=3 SV=2 Back     alignment and function description
>sp|O22719|LHTL3_ARATH Lysine histidine transporter-like 3 OS=Arabidopsis thaliana GN=At1g61270 PE=3 SV=2 Back     alignment and function description
>sp|Q9SS86|LHTL4_ARATH Lysine histidine transporter-like 4 OS=Arabidopsis thaliana GN=At3g01760 PE=3 SV=2 Back     alignment and function description
>sp|Q9C6M2|LHTL6_ARATH Lysine histidine transporter-like 6 OS=Arabidopsis thaliana GN=At1g25530 PE=2 SV=1 Back     alignment and function description
>sp|Q9C9J0|LHTL5_ARATH Lysine histidine transporter-like 5 OS=Arabidopsis thaliana GN=At1g71680 PE=2 SV=2 Back     alignment and function description
>sp|Q9SX98|LHTL8_ARATH Lysine histidine transporter-like 8 OS=Arabidopsis thaliana GN=AATL1 PE=1 SV=1 Back     alignment and function description
>sp|Q84WE9|LHTL7_ARATH Lysine histidine transporter-like 7 OS=Arabidopsis thaliana GN=At4g35180 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query417
449494999441 PREDICTED: lysine histidine transporter 0.976 0.922 0.739 0.0
224102333439 lysine/histidine transporter [Populus tr 0.990 0.940 0.694 0.0
356574036450 PREDICTED: lysine histidine transporter 0.983 0.911 0.704 0.0
297805586445 hypothetical protein ARALYDRAFT_916150 [ 0.997 0.934 0.700 0.0
30693663446 Lysine histidine transporter 1 [Arabidop 0.997 0.932 0.699 0.0
224110766439 lysine/histidine transporter [Populus tr 0.995 0.945 0.705 0.0
30693666445 Lysine histidine transporter 1 [Arabidop 0.997 0.934 0.700 0.0
297738354471 unnamed protein product [Vitis vinifera] 0.983 0.870 0.732 0.0
225425875437 PREDICTED: lysine histidine transporter 0.983 0.938 0.732 0.0
225425848438 PREDICTED: lysine histidine transporter 0.983 0.936 0.734 0.0
>gi|449494999|ref|XP_004159706.1| PREDICTED: lysine histidine transporter 1-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  654 bits (1686), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/430 (73%), Positives = 373/430 (86%), Gaps = 23/430 (5%)

Query: 11  EEARQKAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMSHLGWGPGIAVLIIS 70
           ++A QKAIDDWLPITSSRNAKWWY+AFHNVTAMVGAGVLSLPYAMS LGWGPG  ++I+S
Sbjct: 12  KDANQKAIDDWLPITSSRNAKWWYAAFHNVTAMVGAGVLSLPYAMSELGWGPGSVIMILS 71

Query: 71  WVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGAFGDKLGLWIVVPQQVIVEVSTNIIYMV 130
           W++TLYTLWQMVEMHEMVPGKRFDRYHELGQ AFG+KLGLWIVVPQQ+ VE+  NI+YMV
Sbjct: 72  WIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLWIVVPQQLTVEIGVNIVYMV 131

Query: 131 TGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSLAAAVMSLSYS 190
           TGGKS KK HE +CPSC +IKTSY+I+IFA+IHFVLSHLPNFNSIS VSLAAAVMSLSYS
Sbjct: 132 TGGKSLKKFHETVCPSCSQIKTSYFIVIFASIHFVLSHLPNFNSISGVSLAAAVMSLSYS 191

Query: 191 TIAWVVPLEKGVEPDVDYSYNAKSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTP 250
           TIAWV  LEKGV+P+VDYSY A ST+D +F+F + LG+VAFA+AGHNVVLEIQATIPSTP
Sbjct: 192 TIAWVASLEKGVQPNVDYSYKASSTSDGVFHFLSGLGEVAFAFAGHNVVLEIQATIPSTP 251

Query: 251 EKPSKGPMWKGVVVAYIIVAICYFPVALVGYYIFGNTVEDNILLTLEKPIWIVAAANLFV 310
           EKPSKGPMWKGV++AY++VA+CYFPVA++GY++FGN VEDNIL++LEKP W++A AN+FV
Sbjct: 252 EKPSKGPMWKGVILAYLVVAVCYFPVAMIGYWVFGNAVEDNILISLEKPAWLIATANMFV 311

Query: 311 VVHVIGSYQIFAMPVFDMIETFLVKQLKFTPSFMLRLVTRSLYVAFTMIVAISVPFFGSL 370
           VVHV+GSYQI+AMPVFDMIET LVK+LKF P F LR +TRSLYVAFTM+V I+VPFFG L
Sbjct: 312 VVHVVGSYQIYAMPVFDMIETLLVKRLKFKPCFRLRFITRSLYVAFTMLVGIAVPFFGGL 371

Query: 371 MGFFGGFALAPTSYYF-----------------------CIVLGVLLMILAPIGGLRSII 407
           +GFFGG A APT+Y+                        CIV GVLLM+L+PIGG+R++I
Sbjct: 372 LGFFGGLAFAPTTYFLPCTMWLAICKPRRFSLSWIINWICIVFGVLLMVLSPIGGMRTLI 431

Query: 408 MSAKNYEFFS 417
           +SAKNY+FFS
Sbjct: 432 LSAKNYQFFS 441

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224102333|ref|XP_002312642.1| lysine/histidine transporter [Populus trichocarpa] gi|222852462|gb|EEE90009.1| lysine/histidine transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356574036|ref|XP_003555159.1| PREDICTED: lysine histidine transporter 1-like [Glycine max] Back     alignment and taxonomy information
>gi|297805586|ref|XP_002870677.1| hypothetical protein ARALYDRAFT_916150 [Arabidopsis lyrata subsp. lyrata] gi|297316513|gb|EFH46936.1| hypothetical protein ARALYDRAFT_916150 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30693663|ref|NP_851109.1| Lysine histidine transporter 1 [Arabidopsis thaliana] gi|75262627|sp|Q9FKS8.1|LHT1_ARATH RecName: Full=Lysine histidine transporter 1 gi|14194151|gb|AAK56270.1|AF367281_1 AT5g40780/K1B16_3 [Arabidopsis thaliana] gi|10177957|dbj|BAB11340.1| amino acid permease [Arabidopsis thaliana] gi|22137070|gb|AAM91380.1| At5g40780/K1B16_3 [Arabidopsis thaliana] gi|332007210|gb|AED94593.1| Lysine histidine transporter 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224110766|ref|XP_002315629.1| lysine/histidine transporter [Populus trichocarpa] gi|222864669|gb|EEF01800.1| lysine/histidine transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|30693666|ref|NP_198894.2| Lysine histidine transporter 1 [Arabidopsis thaliana] gi|332007211|gb|AED94594.1| Lysine histidine transporter 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297738354|emb|CBI27555.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225425875|ref|XP_002270050.1| PREDICTED: lysine histidine transporter 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225425848|ref|XP_002265721.1| PREDICTED: lysine histidine transporter 1 [Vitis vinifera] gi|297738372|emb|CBI27573.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query417
TAIR|locus:2024071441 LHT2 "lysine histidine transpo 0.935 0.884 0.712 3.4e-169
TAIR|locus:2008605441 AT1G67640 "AT1G67640" [Arabido 0.916 0.866 0.720 8e-168
TAIR|locus:2154815446 LHT1 "lysine histidine transpo 0.930 0.869 0.701 4.6e-161
UNIPROTKB|Q85V22441 ht "Histidine amino acid trans 0.904 0.854 0.721 3.3e-160
TAIR|locus:2008154453 AT1G48640 [Arabidopsis thalian 0.923 0.849 0.670 7.1e-154
TAIR|locus:2008435451 AT1G61270 [Arabidopsis thalian 0.935 0.864 0.581 1.8e-129
TAIR|locus:2031215440 AT1G25530 [Arabidopsis thalian 0.944 0.895 0.535 9.2e-124
TAIR|locus:2013056448 AT1G71680 [Arabidopsis thalian 0.899 0.837 0.559 1.5e-121
TAIR|locus:2015383519 AT1G47670 [Arabidopsis thalian 0.889 0.714 0.358 8.7e-67
TAIR|locus:2132816478 LHT7 "LYS/HIS transporter 7" [ 0.884 0.771 0.305 1e-45
TAIR|locus:2024071 LHT2 "lysine histidine transporter 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1532 (544.3 bits), Expect = 3.4e-169, Sum P(2) = 3.4e-169
 Identities = 280/393 (71%), Positives = 326/393 (82%)

Query:     4 NNNMSQEE--EARQKAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMSHLGWG 61
             N+ MS  E   A+QK +DDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMS+LGWG
Sbjct:     3 NSEMSASEVAAAKQKNVDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMSNLGWG 62

Query:    62 PGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGAFGDKLGLWIVVPQQVIVE 121
             PG+ ++++SW++TLYTLWQMVEMHE+VPGKR DRYHELGQ AFG+KLGLWIVVPQQ+IVE
Sbjct:    63 PGVTIMVMSWIITLYTLWQMVEMHEIVPGKRLDRYHELGQHAFGEKLGLWIVVPQQLIVE 122

Query:   122 VSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSLA 181
             V  +I+YMVTGG S KK H+++CP CKEI+T++WIMIFA++HFV+SHLPNFNSIS++SLA
Sbjct:   123 VGVDIVYMVTGGASLKKVHQLVCPDCKEIRTTFWIMIFASVHFVISHLPNFNSISIISLA 182

Query:   182 AAVMSLSYSTIAWVVPLEKGVEPDVDYSYNAKSTTDAMFNFFTALGDVAFAYAGHNVVLE 241
             AAVMSL+YSTIAW   + KGV PDVDYS  A +    +FNF  ALGDVAFAYAGHNVVLE
Sbjct:   183 AAVMSLTYSTIAWAASVHKGVHPDVDYSPRASTDVGKVFNFLNALGDVAFAYAGHNVVLE 242

Query:   242 IQATIPSTPEKPSKGPMWKGXXXXXXXXXXCYFPVALVGYYIFGNTVEDNILLTLEKPIW 301
             IQATIPSTPE PSK PMW+G          CYFPVA +GYYIFGN+V+DNIL+TLEKPIW
Sbjct:   243 IQATIPSTPEMPSKVPMWRGVIVAYIVVAICYFPVAFLGYYIFGNSVDDNILITLEKPIW 302

Query:   302 IVAAANLFVVVHVIGSYQIFAMPVFDMIETFLVKQLKFTPSFMLRLVTRSLYVAFTMIVA 361
             ++A AN+FVV+HVIGSYQIFAMPVFDM+ET LVK++ F PSF LR +TRSLYVAFTMIVA
Sbjct:   303 LIAMANMFVVIHVIGSYQIFAMPVFDMLETVLVKKMNFNPSFKLRFITRSLYVAFTMIVA 362

Query:   362 ISVPXXXXXXXXXXXXALAPTSYYF-CIVLGVL 393
             I VP            A APT+YY  CI+  VL
Sbjct:   363 ICVPFFGGLLGFFGGFAFAPTTYYLPCIMWLVL 395
GO:0005886 "plasma membrane" evidence=ISM
GO:0006865 "amino acid transport" evidence=ISS
GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS
GO:0016020 "membrane" evidence=ISS
GO:0015172 "acidic amino acid transmembrane transporter activity" evidence=IGI
GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IGI
TAIR|locus:2008605 AT1G67640 "AT1G67640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154815 LHT1 "lysine histidine transporter 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q85V22 ht "Histidine amino acid transporter" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
TAIR|locus:2008154 AT1G48640 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008435 AT1G61270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031215 AT1G25530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013056 AT1G71680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2015383 AT1G47670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2132816 LHT7 "LYS/HIS transporter 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FKS8LHT1_ARATHNo assigned EC number0.69900.99760.9327yesno
Q9LRB5LHT2_ARATHNo assigned EC number0.72430.99280.9387nono
Q9SR44LHTL2_ARATHNo assigned EC number0.73900.98320.9297nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query417
pfam01490406 pfam01490, Aa_trans, Transmembrane amino acid tran 4e-99
COG0814415 COG0814, SdaC, Amino acid permeases [Amino acid tr 1e-14
PLN03074473 PLN03074, PLN03074, auxin influx permease; Provisi 6e-09
pfam03222393 pfam03222, Trp_Tyr_perm, Tryptophan/tyrosine perme 0.002
TIGR00837381 TIGR00837, araaP, aromatic amino acid transport pr 0.003
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein Back     alignment and domain information 
 Score =  301 bits (772), Expect = 4e-99
 Identities = 138/412 (33%), Positives = 205/412 (49%), Gaps = 41/412 (9%)

Query: 28  RNAKWWYSAFHNVTAMVGAGVLSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEM 87
                W + F+ + A++GAGVLSLPYA   LGW PG+ +L+I  +++LYTL  +V+  + 
Sbjct: 1   GTISAWQAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKY 60

Query: 88  VP---GKRFDRYHELGQGAFGDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVIC 144
           V    GKR   Y +LG   FG   G  +++   ++      I Y++  G +     +   
Sbjct: 61  VDKVKGKRRKSYGDLGYRLFG-PKGKLLILFAILVNLFGVCISYLIFAGDNLPAIFDSFF 119

Query: 145 PSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSLAAAVMSLSYSTIAWVVPLEKGVEP 204
            +C  I   Y+I+IF  I   LS +PN +++S++SL AAV SL Y  I  +   E GV  
Sbjct: 120 DTC-HISLVYFIIIFGLIFIPLSFIPNLSALSILSLVAAVSSL-YIVILVLSVAELGVLT 177

Query: 205 DVDYSYNAKSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWKGVVV 264
                     T   +   F A+G + FA+ GH V+L IQ T+ S P K     M K ++ 
Sbjct: 178 AQGVGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKS-PSK--FKAMTKVLLT 234

Query: 265 AYIIVAICYFPVALVGYYIFGNTVEDNILLTLEKPIWIVAAANLFVVVHVIGSYQIFAMP 324
           A IIV + Y  V LVGY  FGN V+ NILL L K  W++  ANL +V+H++ SY + A P
Sbjct: 235 AIIIVTVLYILVGLVGYLAFGNNVKGNILLNLPKSDWLIDIANLLLVLHLLLSYPLQAFP 294

Query: 325 VFDMIETFLVKQ----LKFTPSFMLRLVTRSLYVAFTMIVAISVPFFGSLMGFFGGFALA 380
           +  ++E  L ++         S +LR+V RS  V  T ++AISVPF G  +   G  + A
Sbjct: 295 IRQIVENLLFRKGASGKHNPKSKLLRVVIRSGLVVITYLIAISVPFLGDFLSLVGATSGA 354

Query: 381 PTSYYF----------------------------CIVLGVLLMILAPIGGLR 404
           P ++                              CIV+G+LLM     G + 
Sbjct: 355 PLTFILPPLFHLKLKKTKKKSLEKLWKPDILDVICIVIGLLLMAYGVAGLII 406

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|215559 PLN03074, PLN03074, auxin influx permease; Provisional Back     alignment and domain information
>gnl|CDD|112053 pfam03222, Trp_Tyr_perm, Tryptophan/tyrosine permease family Back     alignment and domain information
>gnl|CDD|233146 TIGR00837, araaP, aromatic amino acid transport protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 417
PTZ00206467 amino acid transporter; Provisional 100.0
KOG1304449 consensus Amino acid transporters [Amino acid tran 100.0
KOG1303437 consensus Amino acid transporters [Amino acid tran 100.0
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 100.0
PLN03074473 auxin influx permease; Provisional 100.0
KOG1305411 consensus Amino acid transporter protein [Amino ac 100.0
KOG4303524 consensus Vesicular inhibitory amino acid transpor 100.0
COG0814415 SdaC Amino acid permeases [Amino acid transport an 100.0
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.93
PRK09664415 tryptophan permease TnaB; Provisional 99.93
PRK10483414 tryptophan permease; Provisional 99.92
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.91
PRK13629443 threonine/serine transporter TdcC; Provisional 99.9
PRK15132403 tyrosine transporter TyrP; Provisional 99.9
TIGR00814397 stp serine transporter. The HAAAP family includes 99.86
PRK10655438 potE putrescine transporter; Provisional 99.6
PRK10249458 phenylalanine transporter; Provisional 99.56
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 99.56
PRK11021410 putative transporter; Provisional 99.55
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 99.54
PRK11387471 S-methylmethionine transporter; Provisional 99.53
PRK10644445 arginine:agmatin antiporter; Provisional 99.52
PRK15049499 L-asparagine permease; Provisional 99.52
TIGR00906 557 2A0303 cationic amino acid transport permease. 99.52
TIGR00930 953 2a30 K-Cl cotransporter. 99.52
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 99.52
TIGR00909429 2A0306 amino acid transporter. 99.52
KOG1287479 consensus Amino acid transporters [Amino acid tran 99.51
PRK10746461 putative transport protein YifK; Provisional 99.5
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 99.49
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 99.49
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.46
PRK10238456 aromatic amino acid transporter; Provisional 99.46
PRK10580457 proY putative proline-specific permease; Provision 99.45
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 99.41
PRK10836489 lysine transporter; Provisional 99.4
TIGR00908442 2A0305 ethanolamine permease. The three genes used 99.38
TIGR00911501 2A0308 L-type amino acid transporter. 99.38
PRK11357445 frlA putative fructoselysine transporter; Provisio 99.37
TIGR00913478 2A0310 amino acid permease (yeast). 99.36
PRK10197446 gamma-aminobutyrate transporter; Provisional 99.35
PF03845320 Spore_permease: Spore germination protein; InterPr 99.31
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 99.27
COG0531466 PotE Amino acid transporters [Amino acid transport 99.16
KOG1286 554 consensus Amino acid transporters [Amino acid tran 99.11
COG0833 541 LysP Amino acid transporters [Amino acid transport 99.07
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 99.06
PRK15238496 inner membrane transporter YjeM; Provisional 98.92
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 98.89
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 98.87
TIGR00907482 2A0304 amino acid permease (GABA permease). 98.86
TIGR00910 507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 98.8
KOG3832319 consensus Predicted amino acid transporter [Genera 98.65
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.61
KOG1289 550 consensus Amino acid transporters [Amino acid tran 98.29
COG3949349 Uncharacterized membrane protein [Function unknown 98.29
PRK11375484 allantoin permease; Provisional 98.26
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 98.23
PRK09442483 panF sodium/panthothenate symporter; Provisional 98.05
TIGR00813407 sss transporter, SSS family. have different number 98.05
COG0591493 PutP Na+/proline symporter [Amino acid transport a 98.04
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 97.96
PRK12488 549 acetate permease; Provisional 97.95
TIGR02711 549 symport_actP cation/acetate symporter ActP. Member 97.9
COG1457442 CodB Purine-cytosine permease and related proteins 97.88
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 97.61
TIGR03648 552 Na_symport_lg probable sodium:solute symporter, VC 97.61
PRK09395 551 actP acetate permease; Provisional 97.58
PRK11017404 codB cytosine permease; Provisional 97.57
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 97.52
PRK10484523 putative transporter; Provisional 97.46
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 97.37
PRK15419502 proline:sodium symporter PutP; Provisional 97.33
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 97.2
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 97.11
KOG1288 945 consensus Amino acid transporters [Amino acid tran 96.99
PF01566358 Nramp: Natural resistance-associated macrophage pr 96.96
TIGR00835425 agcS amino acid carrier protein. Members of the AG 96.95
KOG2083 643 consensus Na+/K+ symporter [Inorganic ion transpor 96.95
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 96.91
COG0733439 Na+-dependent transporters of the SNF family [Gene 96.55
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 96.26
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 95.96
PRK15015 701 carbon starvation protein A; Provisional 95.95
COG1966 575 CstA Carbon starvation protein, predicted membrane 95.88
PRK00701439 manganese transport protein MntH; Reviewed 95.74
COG4147 529 DhlC Predicted symporter [General function predict 94.94
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 94.42
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 94.17
PF00209 523 SNF: Sodium:neurotransmitter symporter family; Int 93.93
PRK15433439 branched-chain amino acid transport system 2 carri 93.06
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 93.04
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 93.03
KOG2349 585 consensus Na+:iodide/myo-inositol/multivitamin sym 92.24
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 89.89
PRK15433439 branched-chain amino acid transport system 2 carri 87.49
PHA02764399 hypothetical protein; Provisional 86.67
TIGR00842453 bcct choline/carnitine/betaine transport. properti 81.21
COG1292537 BetT Choline-glycine betaine transporter [Cell env 80.69
TIGR01197390 nramp NRAMP (natural resistance-associated macroph 80.69
>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.1e-53  Score=423.65  Aligned_cols=370  Identities=16%  Similarity=0.234  Sum_probs=304.7

Q ss_pred             CCchhHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHhhcCCcc
Q 014861           29 NAKWWYSAFHNVTAMVGAGVLSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGAFGDKL  108 (417)
Q Consensus        29 ~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~G~~~  108 (417)
                      .+|..++++|++|+++|+|+|++|++|+++||++|++++++++.++.||.+++.+++++ .+  ..+|+|++++++|| +
T Consensus        59 ~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~-~~--~~sY~~la~~~~G~-~  134 (467)
T PTZ00206         59 PGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADK-TN--IRTYEGVARVLLGP-W  134 (467)
T ss_pred             CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CC--CCCHHHHHHHHhCH-H
Confidence            46779999999999999999999999999999999999999999999999999998774 23  34999999999997 6


Q ss_pred             cceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCc----ccccchhhHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 014861          109 GLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSC----KEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSLAAAV  184 (417)
Q Consensus       109 g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~----~~~~~~~~~~i~~~~~~pl~~~~~~~~l~~~s~~~~~  184 (417)
                      |++++++.+.+.++|+|++|+++.+|.++.+++......    ...++..+.++..++++|++++|++++++++|.+++.
T Consensus       135 g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~~  214 (467)
T PTZ00206        135 GSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTIAVS  214 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHHHHHH
Confidence            779999999999999999999999999998886432110    1122334455667789999999999999999999998


Q ss_pred             HHHHHHHHHhhhcccccCCCCccc---cC---CCCCchhhHhHHHHHHHhHhhhccCccchhhhhhcCCcCCCCCCCCCc
Q 014861          185 MSLSYSTIAWVVPLEKGVEPDVDY---SY---NAKSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPM  258 (417)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~~~~~  258 (417)
                      +.+..++.++++.+.++..++.+.   ..   ++........+++.++|+++|||.||.+++++++||    |||+++|+
T Consensus       215 ~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M----~~~t~~~~  290 (467)
T PTZ00206        215 FMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDM----TNRSVGKF  290 (467)
T ss_pred             HHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhh----cccchhHH
Confidence            666555444445554443222110   00   111111223468899999999999999999999999    77777778


Q ss_pred             chHHHHHHHHHHHHHHhHhhhhhhcccCCChHHHhhCC-CCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHhhhc
Q 014861          259 WKGVVVAYIIVAICYFPVALVGYYIFGNTVEDNILLTL-EKPIWIVAAANLFVVVHVIGSYQIFAMPVFDMIETFLVKQL  337 (417)
Q Consensus       259 ~~~~~~a~~~~~~~y~~~g~~gy~~fG~~~~~~il~~~-~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~l~~~~~~~~  337 (417)
                      .+++..++.+++++|.++|++||+.||+++++|+++|+ |.++....++++.+.+.++.+||++.+|+|+.+++.+..+.
T Consensus       291 ~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~~~  370 (467)
T PTZ00206        291 VLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPAIMVGFVGVLVKLFVSYALLGMACRNALYDVIGWDA  370 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCCchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhCCCc
Confidence            79999999999999999999999999999999999999 55677788899999999999999999999999999875443


Q ss_pred             CCChhhHHHHHHHHHHHHHHHHHHHHccChhhhhhhhhhcchhHHHHH--------------------------HHHHHH
Q 014861          338 KFTPSFMLRLVTRSLYVAFTMIVAISVPFFGSLMGFFGGFALAPTSYY--------------------------FCIVLG  391 (417)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~la~~vp~~~~i~~~~Ga~~~~~~~f~--------------------------~~~~~g  391 (417)
                      + +.++++|...+..+++.+.++|+.+|+++.+++++||+++++++|+                          .++++|
T Consensus       371 ~-~~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~~~~~~~~lli~G  449 (467)
T PTZ00206        371 R-KVAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPFYYISTYVVLITG  449 (467)
T ss_pred             c-cCchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchHHHHHHHHHHHHH
Confidence            2 2244556666777777889999999999999999999999988877                          577899


Q ss_pred             HHHHHHHhHHHHHHHH
Q 014861          392 VLLMILAPIGGLRSII  407 (417)
Q Consensus       392 ~~~~v~g~~~si~~l~  407 (417)
                      ++..+.|||.+|++.+
T Consensus       450 v~~~v~Gt~~si~~~~  465 (467)
T PTZ00206        450 VIAIVFGTGATIWGVT  465 (467)
T ss_pred             hheEEecchhHhhHHh
Confidence            9999999999999875

>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>KOG3832 consensus Predicted amino acid transporter [General function prediction only] Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK15015 carbon starvation protein A; Provisional Back     alignment and domain information
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms] Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>PHA02764 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00842 bcct choline/carnitine/betaine transport Back     alignment and domain information
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query417
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 99.65
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 99.52
4djk_A 511 Probable glutamate/gamma-aminobutyrate antiporter; 99.28
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 98.57
3dh4_A 530 Sodium/glucose cotransporter; membrane protein, sy 97.52
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 96.48
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 96.1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=99.65  E-value=1.5e-14  Score=142.80  Aligned_cols=248  Identities=15%  Similarity=0.117  Sum_probs=166.2

Q ss_pred             cccCCCchhHHHHHHHHhhhhhhhchHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHhhc
Q 014861           25 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMSHLGWGPGIAVLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGAF  104 (417)
Q Consensus        25 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~~~~~~G~~~gi~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~  104 (417)
                      +++|+.+.++..+..+++++|+|++.+|....+.|. .+++..++.++........+.|...+.|+.+  +..+..++.+
T Consensus         5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~-~~~~~~li~~~~~~~~a~~~~el~~~~p~~G--g~y~~~~~~~   81 (445)
T 3l1l_A            5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSFLDPSPG--GSYAYARRCF   81 (445)
T ss_dssp             --CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTT--THHHHHHHHS
T ss_pred             CCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHccCCCCC--CchhhHHhHc
Confidence            356789999999999999999999999999888886 4788888899999999999999877777654  7888899999


Q ss_pred             CCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcCCcccccchhhHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 014861          105 GDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEVICPSCKEIKTSYWIMIFAAIHFVLSHLPNFNSISVVSLAAAV  184 (417)
Q Consensus       105 G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~l~~~s~~~~~  184 (417)
                      ||++| ++.....++.......++....+++++..++...   .++.... ..+..+.++-....+..+...+++.+...
T Consensus        82 G~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~in~~g~~~~~~~~~~~~~  156 (445)
T 3l1l_A           82 GPFLG-YQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK---DPWVLTI-TCVVVLWIFVLLNIVGPKMITRVQAVATV  156 (445)
T ss_dssp             CHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGG---SHHHHHH-HHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             CChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccc---ccHHHHH-HHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence            99888 7888888877777777777777777665543321   0011111 11112222223334456666666555544


Q ss_pred             HHHHHHHHHhhhcccccCCCCccccCCCCCchhhHhHHHHHHHhHhhhccCccchhhhhhcCCcCCCCCCCCCcchHHHH
Q 014861          185 MSLSYSTIAWVVPLEKGVEPDVDYSYNAKSTTDAMFNFFTALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWKGVVV  264 (417)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~~~~  264 (417)
                      ..+..+.++....+.+.+.+.....++. ....++.++..++....|+|.|........+|+    |||+| +.+|++..
T Consensus       157 ~~i~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~----k~p~r-~ip~a~~~  230 (445)
T 3l1l_A          157 LALIPIVGIAVFGWFWFRGETYMAAWNV-SGLGTFGAIQSTLNVTLWSFIGVESASVAAGVV----KNPKR-NVPIATIG  230 (445)
T ss_dssp             HHHHHHHHHHHTTSTTCCCCCCCCC------------HHHHHHHHHHTTTTTTHHHHGGGGB----SSHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhChhhcccccCc-cCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHh----cCccc-cccHHHHH
Confidence            4333222222222222111111111111 111235678889999999999999999999999    78865 57799999


Q ss_pred             HHHHHHHHHHhHhhhhhhcccC
Q 014861          265 AYIIVAICYFPVALVGYYIFGN  286 (417)
Q Consensus       265 a~~~~~~~y~~~g~~gy~~fG~  286 (417)
                      +...+.++|++..+......+.
T Consensus       231 ~~~~~~~~y~~~~~~~~~~~~~  252 (445)
T 3l1l_A          231 GVLIAAVCYVLSTTAIMGMIPN  252 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCT
T ss_pred             HHHHHHHHHHHHHHHHHhcCCH
Confidence            9999999999998887766654
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query417
d2a65a1 509 Na(+):neurotransmitter symporter homologue LeuT {A 95.09
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.09  E-value=1.3  Score=41.17  Aligned_cols=109  Identities=13%  Similarity=0.128  Sum_probs=64.2

Q ss_pred             CchhHHHHHHHHhhhhhhh-chHHHHHHhhChhHHHH----HHHHHHHHHHHHHHHHHhcchhcCCcccCcHHHHHHhhc
Q 014861           30 AKWWYSAFHNVTAMVGAGV-LSLPYAMSHLGWGPGIA----VLIISWVVTLYTLWQMVEMHEMVPGKRFDRYHELGQGAF  104 (417)
Q Consensus        30 ~s~~~~~~~l~~~~iG~Gi-L~lP~~~~~~G~~~gi~----~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~  104 (417)
                      .+..+-++..++..+|-|- .-.||...+-|....++    .+++.++=..+-=..+.+..+   +.....+..+.....
T Consensus         5 ~s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~---~g~i~~~~~i~~~~~   81 (509)
T d2a65a1           5 ATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGG---AQGHGTTPAIFYLLW   81 (509)
T ss_dssp             SCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH---TTTCCSHHHHHHHHS
T ss_pred             CChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCC---CCcccHHHHHHHHhc
Confidence            4667888999999999965 66999976555332232    223333333222233333222   112347788877776


Q ss_pred             CCcccceehhHHHHHHHHHHHHHHHHHhhhhHHHHHhh
Q 014861          105 GDKLGLWIVVPQQVIVEVSTNIIYMVTGGKSFKKAHEV  142 (417)
Q Consensus       105 G~~~g~~~v~~~~~~~~~g~~~~y~i~~~~~l~~~~~~  142 (417)
                      +.+.. ..+.....+.++..++-|.+..+-.+....+.
T Consensus        82 ~~~~~-~giG~~~~~~~~~i~~yy~vi~~w~l~Y~~~s  118 (509)
T d2a65a1          82 RNRFA-KILGVFGLWIPLVVAIYYVYIESWTLGFAIKF  118 (509)
T ss_dssp             CSHHH-HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcch-hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55444 24566666777777777887777766554443