Citrus Sinensis ID: 014883

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410------
Protein Sequence
MTGNESESELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGM
Secondary Structure (PSIPRED)
cccccccccccccccccccccEEEEEEEcccHHHHHHHHHHHHccccEEEcccccccccccccccHHHHHHHHcccccccccccccccccEEEEcccccccccccccEEEcccccEEEEcccHHHHHHHHcccccEEEEEEcccEEEEcccccEEEccccHHHHcccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEccccccHHHHHHHHHHHcccEEEccccEEEEEEccccccEEEEEEccccEEEEcEEEEccccccccccccccHHHHHHHccccccccccEEEEEEEEEccccccccccEEEEEccccccccccccEEEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEccccccccccccccccEEEEcccHHHHHHHHHHHHccccEEEEcccccccccccEEcHHHHHHHHcccccccHHHHHHHHccccccccccHHHcccccccEEEccccHHHHccccHHHEEEEcccEEEEEEEEEcEEEEEEcccEEEEccccHHHHHHcccccHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHccccccHHHHHHHHHHHccccHHccccccccHHHHHHHHHHHHHHHHHccccccEEEEccccccccHHHHHHHHHHccEEEccccccEEEEEccccEEEEEEEccccEEEEEEEEEccccccccccccccccccccccccccEEEccEEEEEEEEEccccccccccEEEEEccHHccccccccEEEEEEEcccccccccc
Coil and Loop (DISEMBL)
mtgneseselpvppyppieptafDLIVIGTGLPESVISAAAsasgksvlhldpnpfygshfsslSIADLTHflnshstpssvcpdplysdveiSNYASRLLsqhprnfnldvsgprvlFCADHAVDLMLKSGASHYlefksidatfmldadaklcsvpdsraaifkdkslglmEKNQLMRFFKLVQGhlsldeseennvriseedldspFAEFLtkmklphkIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGAliypiygqgelpqaFCRRAAVKGCLYVLRMPvislltdqnsgsykgvrlasgqdilshklvldpsftvpgslasSHQQLQESFQAfslsdnkgkvargicitrsslkpdlsnflvifpprslfpeqvTSIRVLQlggnlavcplgm
Flexible Loop (DISEMBL)
mtgneseselpvppyppIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISlltdqnsgsYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAfslsdnkgKVARGICItrsslkpdlsnFLVIFPPRSLFPEQVTSIRVLQlggnlavcplgm
Low Complexity Region (SEG)
MTGNeseselpvppyppiepTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGM
Disordered region (IsUnstruct)
******************EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHS***SVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLS******************PFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTV************************GKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCP***
Disordered Region (DISOPRED)
***************PPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYA**LLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSL****************SDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLG*
Disordered Region (DISEMBL)
***********VPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGM
Disordered Region (DISPRO)
******ESELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR**SQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPG***************FSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVC****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooohhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTGNESESELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	416	2.2.26 [Sep-21-2011]
Q9V8W3	511	Rab proteins geranylgeran	yes	no	0.721	0.587	0.340	3e-41
Q9QZD5	621	Rab proteins geranylgeran	yes	no	0.668	0.447	0.312	3e-30
P32864	603	Rab proteins geranylgeran	yes	no	0.862	0.595	0.278	4e-30
O93831	640	Rab proteins geranylgeran	N/A	no	0.848	0.551	0.285	6e-30
Q10305	440	Probable secretory pathwa	yes	no	0.817	0.772	0.267	2e-29
P50396	447	Rab GDP dissociation inhi	no	no	0.754	0.702	0.270	1e-28
P21856	447	Rab GDP dissociation inhi	no	no	0.754	0.702	0.270	1e-28
P24386	653	Rab proteins geranylgeran	yes	no	0.665	0.424	0.302	3e-28
Q6Q7J2	445	Rab GDP dissociation inhi	no	no	0.670	0.626	0.287	3e-28
O97555	447	Rab GDP dissociation inhi	yes	no	0.754	0.702	0.267	4e-28

>sp|Q9V8W3|RABEP_DROME Rab proteins geranylgeranyltransferase component A OS=Drosophila melanogaster GN=Rep PE=2 SV=1

 Score =  169 bits (429), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 111/326 (34%), Positives = 165/326 (50%), Gaps = 26/326 (7%)

Query: 20  PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTP 79
           P  FDL+VIGTG  ES I+AA S  GKSVLHLD N +YG  +SS S+  L   L+    P
Sbjct: 6   PEQFDLVVIGTGFTESCIAAAGSRIGKSVLHLDSNEYYGDVWSSFSMDALCARLDQEVEP 65

Query: 80  SSVCPDPLY--------SDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKS 131
            S   +  Y        S+ +  ++    +    R F+LD+  PR+L+ A   V L++KS
Sbjct: 66  HSALRNARYTWHSMEKESETDAQSWNRDSVLAKSRRFSLDLC-PRILYAAGELVQLLIKS 124

Query: 132 GASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSL 191
               Y EF+++D   M   + ++ SVP SR+ +F  K+L ++EK  LM+F          
Sbjct: 125 NICRYAEFRAVDHVCMRH-NGEIVSVPCSRSDVFNTKTLTIVEKRLLMKFLTACN----- 178

Query: 192 DESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGI 251
           D  E+     S E     F E+L   ++  KI S V+ AIAM        E       G+
Sbjct: 179 DYGEDKCNEDSLEFRGRTFLEYLQAQRVTEKISSCVMQAIAMCGPSTSFEE-------GM 231

Query: 252 NRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNS 311
            R   +  S+GR+ N     ++P+YG GELPQ FCR  AV G +Y L+  V  +  D NS
Sbjct: 232 QRTQRFLGSLGRYGNT--PFLFPMYGCGELPQCFCRLCAVYGGIYCLKRAVDDIALDSNS 289

Query: 312 GSYKGVRLASGQDILSHKLVLDPSFT 337
             +  +  ++G+ + +  +V  P +T
Sbjct: 290 NEF--LLSSAGKTLRAKNVVSAPGYT 313

Binds unprenylated Rab proteins, presents it to the catalytic component B, and remains bound to it after the geranylgeranyl transfer reaction. The component A is thought to be regenerated by transferring its prenylated Rab to a protein acceptor.
Drosophila melanogaster (taxid: 7227)

>sp|Q9QZD5|RAE2_MOUSE Rab proteins geranylgeranyltransferase component A 2 OS=Mus musculus GN=Chml PE=2 SV=2

 Score =  132 bits (333), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 98/314 (31%), Positives = 154/314 (49%), Gaps = 36/314 (11%)

Query: 101 LSQHPRNFNLD-VSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPD 159
           + +  R FN+D VS P  L+     +DL++KS  S Y EFK++        + K+  VP 
Sbjct: 221 MVKESRRFNIDLVSKP--LYSQGSLIDLLIKSNVSRYAEFKNVTRILAF-WEGKVEQVPC 277

Query: 160 SRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKL 219
           SRA +F  K L ++EK  LM+F      +    +  ++  + S       F+++L   KL
Sbjct: 278 SRADVFNSKELSMVEKRMLMKFLTFCLDYEQHSDEYQDFKQCS-------FSDYLKTKKL 330

Query: 220 PHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQG 279
              ++  +L++IAM       SE    T DG+     +   +GRF N     I+P+YG G
Sbjct: 331 TPNLQHFILHSIAM------TSESSCTTLDGLQATKNFLQCLGRFGNT--PFIFPLYGHG 382

Query: 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVP 339
           E+PQ FCR  AV G +Y LR  V  L+ D++SG  KG+  A GQ I ++  +++ S+ +P
Sbjct: 383 EIPQCFCRMCAVFGGVYCLRHKVQCLVVDKDSGRCKGIIDAFGQRISANYFIVEDSY-LP 441

Query: 340 GSLASSHQQLQESFQAFSLSDNKGKVARGICIT-RSSLKPDLSNFLVIFPPRSLFPEQVT 398
               S+ Q  Q              ++R + IT +S LK D    + I     L P   T
Sbjct: 442 KETCSNVQYKQ--------------ISRAVLITDQSILKTDSDQQISILVVPPLEP-GTT 486

Query: 399 SIRVLQLGGNLAVC 412
           S+RV++L  +   C
Sbjct: 487 SVRVMELCSSTMTC 500

Binds unprenylated Rab proteins, presents it to the catalytic Rab GGTase dimer, and remains bound to it after the geranylgeranyl transfer reaction. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane. Less effective than REP-1 in supporting prenylation of Rab3 family.

Mus musculus (taxid: 10090)

>sp|P32864|RAEP_YEAST Rab proteins geranylgeranyltransferase component A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRS6 PE=1 SV=2

 Score =  132 bits (333), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 115/413 (27%), Positives = 185/413 (44%), Gaps = 54/413 (13%)

Query: 14  PYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFL 73
           P P   P   D+++ GTG+ ESV++AA +  G +VLH+D N +YG   ++L++  +  ++
Sbjct: 38  PLPATTPDKVDVLIAGTGMVESVLAAALAWQGSNVLHIDKNDYYGDTSATLTVDQIKRWV 97

Query: 74  NSHSTPSSVCPDPLYSDVEISNYASRLLSQ---HPRNFNLDVSGPRVLFCADHAVDLMLK 130
           N  +  S  C    Y + ++  Y S L+       R+F +D+S P++LF     + +++K
Sbjct: 98  NEVNEGSVSC----YKNAKL--YVSTLIGSGKYSSRDFGIDLS-PKILFAKSDLLSILIK 150

Query: 131 SGASHYLEFKSIDA--TFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGH 188
           S    YLEF+S+    T+  D   KL    +++  IF D++L LM K  LM+F K V   
Sbjct: 151 SRVHQYLEFQSLSNFHTYENDCFEKLT---NTKQEIFTDQNLPLMTKRNLMKFIKFVLNW 207

Query: 189 LSLDESEENNVRISEEDLDSPFAEFL-TKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKT 247
                  E    I +   +   ++FL  K KL       ++++I +  YD  V     K 
Sbjct: 208 -------EAQTEIWQPYAERTMSDFLGEKFKLEKPQVFELIFSIGLC-YDLNV-----KV 254

Query: 248 RDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLT 307
            + + R+  Y +S   +     AL     G GEL Q FCR AAV G  Y L   ++S   
Sbjct: 255 PEALQRIRRYLTSFDVY-GPFPALCSKYGGPGELSQGFCRSAAVGGATYKLNEKLVSF-- 311

Query: 308 DQNSGSYKGVRLASGQDI-LSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVA 366
              + + K      G  + +S K+++ P+     S     QQ Q              V 
Sbjct: 312 ---NPTTKVATFQDGSKVEVSEKVIISPTQAPKDSKHVPQQQYQ--------------VH 354

Query: 367 RGICITRS----SLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLG 415
           R  CI  +          S  +V+FPP SL       ++   LG    +CP G
Sbjct: 355 RLTCIVENPCTEWFNEGESAAMVVFPPGSLKSGNKEVVQAFILGAGSEICPEG 407

Binds unprenylated Rab proteins, presents it to the catalytic Rab GGTase dimer, and remains bound to it after the geranylgeranyl transfer reaction. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O93831|RAEP_CANAX Rab proteins geranylgeranyltransferase component A OS=Candida albicans GN=MRS6 PE=3 SV=1

 Score =  132 bits (332), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 116/407 (28%), Positives = 196/407 (48%), Gaps = 54/407 (13%)

Query: 24  DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHF---LNSHSTPS 80
           D+++IGTGL ES+++AA S  G  VLH+D N +YG   S+L+I  L  +   +NS     
Sbjct: 5   DVLIIGTGLQESILAAALSWQGTQVLHIDSNTYYGDSCSTLTIEQLKKWCGDVNSGKIHQ 64

Query: 81  SVCPDPLYSDVEISNYASRLLSQHP-RNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEF 139
                  + D +I     +  +Q+  +++ +D++ P+++FC    + L++KS    YLEF
Sbjct: 65  -------FQDAQIYIPGGKQSNQYTSKDYGIDLT-PKIMFCQSDLLSLLIKSRVYRYLEF 116

Query: 140 KSIDATFMLDADAKLCSV-PDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENN 198
           +S+    + + D     V   ++  IF DKSL LM K    R+       L LD   +  
Sbjct: 117 QSLSNFHVFENDDFQQKVNATTKQDIFTDKSLSLMTK----RYLMKFLKFLLLDPDYKQR 172

Query: 199 VRISEEDLDSPFAEFLTK-MKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALY 257
           V+      D+P   FL +  KL     + ++Y+I ++ Y ++ S     T+  + R+  +
Sbjct: 173 VKPY---ADTPIQVFLQQEFKLEEPQINELVYSIGLS-YKEQTS-----TKQALIRMKRF 223

Query: 258 NSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPV-----ISLLTDQNSG 312
            SS   +      ++    G GEL Q FCR AAV G  Y L   +     IS +   N G
Sbjct: 224 LSSFDVY-GKFPCMVSKFGGPGELSQGFCRSAAVAGTTYKLNTNLTDFDPISKIAHFNDG 282

Query: 313 SYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICIT 372
           S+  +         + K+++ P+  +P  L SS+ ++ E+ Q +        V R + + 
Sbjct: 283 SHIKI---------NEKIIISPT-QLPKFLQSSYNKVVENLQPYY-------VTRLVTVV 325

Query: 373 RSSLKPDL----SNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLG 415
           R   K  +    S+ +V+FPP SL  +   S++V+   GN  VCP G
Sbjct: 326 RRDCKEWMSGNESSAIVVFPPHSLPTDNQHSVQVIIQNGNSGVCPDG 372

Binds unprenylated Rab proteins, presents it to the catalytic Rab GGTase dimer, and remains bound to it after the geranylgeranyl transfer reaction. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.

Candida albicans (taxid: 5476)

>sp|Q10305|GDI1_SCHPO Probable secretory pathway GDP dissociation inhibitor 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gdi1 PE=3 SV=1

 Score =  130 bits (328), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 106/396 (26%), Positives = 183/396 (46%), Gaps = 56/396 (14%)

Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+IV+GTGL E V+S   S  GK VLH+D N +YG+  +SL++  L         P   
Sbjct: 5   YDVIVLGTGLTECVLSGLLSVDGKKVLHIDRNDYYGADSASLNLTQLYALFR----PGEQ 60

Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
            P+ L  D               R++ +D+  P+ L       ++++ +  + Y+EFK I
Sbjct: 61  RPESLGRD---------------RDWCVDLV-PKFLMANGDLTNILIYTDVTRYIEFKQI 104

Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
             +++   D ++  VP +     K   + L EK +  +F + V  +   D S   ++ I 
Sbjct: 105 AGSYVY-RDGRIAKVPGNEMEALKSPLMSLFEKRRAKKFLEWVNNYREDDPSTYKDINID 163

Query: 203 EEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIG 262
            + ++S F +F     L    +  + +A+A+   D  + +   +TR+   R+ LY SSI 
Sbjct: 164 RDSMESVFKKF----GLQSGTQDFIGHAMALYLDDAYLKKPARETRE---RILLYASSIA 216

Query: 263 RFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG 322
           +F  +    IYP+YG GELPQ F R +A+ G  Y+L  PV  ++   + G   GVR  SG
Sbjct: 217 KFGKS--PYIYPLYGLGELPQGFARLSAIYGGTYMLNQPVDEIVYG-DDGVAIGVR--SG 271

Query: 323 QDILSHKLVL-DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL--KPD 379
             +   K ++ DPS+             +E  ++       G++ R ICI    +    +
Sbjct: 272 DQVAKAKQIIGDPSY------------FREKVRSV------GRLVRAICILNHPIPNTDN 313

Query: 380 LSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLG 415
           L +  +I P   +  ++   I +  +     VCP G
Sbjct: 314 LDSVQIIIPQNQV--KRKHDIYIAGISSVHNVCPKG 347

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P50396|GDIA_MOUSE Rab GDP dissociation inhibitor alpha OS=Mus musculus GN=Gdi1 PE=1 SV=3

 Score =  127 bits (320), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/370 (27%), Positives = 175/370 (47%), Gaps = 56/370 (15%)

Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+IV+GTGL E ++S   S +GK VLH+D NP+YG   SS+             TP   
Sbjct: 5   YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSI-------------TPL-- 49

Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
             + LY   +I       + +  R++N+D+  P+ L      V ++L +  + YL+FK +
Sbjct: 50  --EELYKRFQILEGPPESMGRG-RDWNVDLI-PKFLMANGQLVKMLLYTEVTRYLDFKVV 105

Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
           + +F+     K+  VP +         +G+ EK +  +F   V         +EN+ +  
Sbjct: 106 EGSFVYKG-GKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANF------DENDPKTF 158

Query: 203 E--EDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
           E  +  ++   +   K  L   +     +A+A+   D  + +  L+T   INR+ LY+ S
Sbjct: 159 EGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLET---INRIKLYSES 215

Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
           + R+  +    +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ +  +G   GV+ +
Sbjct: 216 LARYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVK-S 270

Query: 321 SGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK--P 378
            G+     +L+ DPS+ +P  +  +                 G+V R ICI    +K   
Sbjct: 271 EGEVARCKQLICDPSY-IPDRVQKA-----------------GQVIRIICILSHPIKNTN 312

Query: 379 DLSNFLVIFP 388
           D ++  +I P
Sbjct: 313 DANSCQIIIP 322

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Mus musculus (taxid: 10090)

>sp|P21856|GDIA_BOVIN Rab GDP dissociation inhibitor alpha OS=Bos taurus GN=GDI1 PE=1 SV=1

 Score =  127 bits (320), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/370 (27%), Positives = 175/370 (47%), Gaps = 56/370 (15%)

Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+IV+GTGL E ++S   S +GK VLH+D NP+YG   SS+             TP   
Sbjct: 5   YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSI-------------TPL-- 49

Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
             + LY   ++       + +  R++N+D+  P+ L      V ++L +  + YL+FK +
Sbjct: 50  --EELYKRFQLLEGPPETMGRG-RDWNVDLI-PKFLMANGQLVKMLLYTEVTRYLDFKVV 105

Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
           + +F+     K+  VP +         +G+ EK +  +F   V         +EN+ +  
Sbjct: 106 EGSFVYKG-GKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANF------DENDPKTF 158

Query: 203 E--EDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
           E  +  ++   +   K  L   +     +A+A+   D  + +  L+T   INR+ LY+ S
Sbjct: 159 EGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLET---INRIKLYSES 215

Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
           + R+  +    +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ +  +G   GV+ +
Sbjct: 216 LARYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVK-S 270

Query: 321 SGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK--P 378
            G+     +L+ DPS+ VP  +  +                 G+V R ICI    +K   
Sbjct: 271 EGEVARCKQLICDPSY-VPDRVRKA-----------------GQVIRIICILSHPIKNTN 312

Query: 379 DLSNFLVIFP 388
           D ++  +I P
Sbjct: 313 DANSCQIIIP 322

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Bos taurus (taxid: 9913)

>sp|P24386|RAE1_HUMAN Rab proteins geranylgeranyltransferase component A 1 OS=Homo sapiens GN=CHM PE=1 SV=3

 Score =  126 bits (317), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/311 (30%), Positives = 148/311 (47%), Gaps = 34/311 (10%)

Query: 106 RNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIF 165
           R FN+D+   ++L+     +DL++KS  S Y EFK+I        + ++  VP SRA +F
Sbjct: 225 RRFNIDLVS-KLLYSRGLLIDLLIKSNVSRYAEFKNITRILAF-REGRVEQVPCSRADVF 282

Query: 166 KDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS 225
             K L ++EK  LM+F      +    +  +    I+       F E+L   KL   ++ 
Sbjct: 283 NSKQLTMVEKRMLMKFLTFCMEYEKYPDEYKGYEEIT-------FYEYLKTQKLTPNLQY 335

Query: 226 IVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAF 285
           IV+++IAM       SE    T DG+     +   +GR+ N     ++P+YGQGELPQ F
Sbjct: 336 IVMHSIAM------TSETASSTIDGLKATKNFLHCLGRYGNT--PFLFPLYGQGELPQCF 387

Query: 286 CRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASS 345
           CR  AV G +Y LR  V  L+ D+ S   K +    GQ I+S   +++ S+  P ++ S 
Sbjct: 388 CRMCAVFGGIYCLRHSVQCLVVDKESRKCKAIIDQFGQRIISEHFLVEDSY-FPENMCSR 446

Query: 346 HQQLQESFQAFSLSDNKGKVARGICIT-RSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQ 404
            Q  Q              ++R + IT RS LK D    + I    +  P    ++RV++
Sbjct: 447 VQYRQ--------------ISRAVLITDRSVLKTDSDQQISILTVPAEEP-GTFAVRVIE 491

Query: 405 LGGNLAVCPLG 415
           L  +   C  G
Sbjct: 492 LCSSTMTCMKG 502

Binds unprenylated Rab proteins, presents it to the catalytic Rab GGTase dimer, and remains bound to it after the geranylgeranyl transfer reaction. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane. Also a pre-formed complex consisting of CHM and the Rab GGTase dimer (RGGT or component B) can bind to and prenylate Rab proteins; this alternative pathway is proposed to be the predominant pathway for Rab protein geranylgeranylation.

Homo sapiens (taxid: 9606)

>sp|Q6Q7J2|GDIB_PIG Rab GDP dissociation inhibitor beta OS=Sus scrofa GN=GDI2 PE=2 SV=1

 Score =  126 bits (317), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 152/317 (47%), Gaps = 38/317 (11%)

Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS-IADLTHFLNSHSTPSS 81
           +D+IV+GTGL E ++S   S +GK VLH+D NP+YG   +S++ + DL    N    P +
Sbjct: 5   YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFNIPGAPPA 64

Query: 82  VCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKS 141
                                   R++N+D+  P+ L      V ++L +  + YL+FK 
Sbjct: 65  SM-------------------GRGRDWNVDLI-PKFLMANGQLVKMLLFTEVTRYLDFKV 104

Query: 142 IDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRI 201
            + +F+     K+  VP + A       +GL EK +  +F   V         +EN+ R 
Sbjct: 105 TEGSFVYKG-GKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANF------DENDPRT 157

Query: 202 SE--EDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNS 259
            E  +   +   E   K  L   +     +A+A+   D  + +   +T   INR+ LY+ 
Sbjct: 158 FEGVDPKKTAMREVYKKFDLGQDVIDFTGHALALYRTDDYLDQPCCET---INRIKLYSE 214

Query: 260 SIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL 319
           S+ R+  +    +YP+YG GELPQ F R +A+ G  Y+L  P+  ++  QN G   GV+ 
Sbjct: 215 SLARYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPIEEIIV-QN-GKVIGVK- 269

Query: 320 ASGQDILSHKLVLDPSF 336
           + G+     +L+ DPS+
Sbjct: 270 SEGEIARCKQLICDPSY 286

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Sus scrofa (taxid: 9823)

>sp|O97555|GDIA_CANFA Rab GDP dissociation inhibitor alpha OS=Canis familiaris GN=GDI1 PE=2 SV=1

 Score =  126 bits (316), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 99/370 (26%), Positives = 174/370 (47%), Gaps = 56/370 (15%)

Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+IV+GTGL E ++S   S +GK VLH+D NP+YG   SS+             TP   
Sbjct: 5   YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSI-------------TPL-- 49

Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
             + LY   ++       + +  R++N+D+  P+ L      V ++L +  + YL+FK +
Sbjct: 50  --EELYKRFQLLEGPPEAMGRG-RDWNVDLI-PKFLMANGQLVKMLLYTEVTRYLDFKVV 105

Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
           + +F+     K+  VP +         +G+ EK +  +F   V         +EN+ +  
Sbjct: 106 EGSFIYKG-GKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANF------DENDPKTF 158

Query: 203 E--EDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
           E  +   +   +   K  L   +     +A+A+   D  + +  L+T   INR+ LY+ S
Sbjct: 159 EGVDPQSTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLET---INRIKLYSES 215

Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
           + R+  +    +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ +  +G   GV+ +
Sbjct: 216 LARYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVK-S 270

Query: 321 SGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK--P 378
            G+     +L+ DPS+ +P  +  +                 G+V R ICI    +K   
Sbjct: 271 EGEVARCKQLICDPSY-IPDRVRKA-----------------GQVIRIICILSHPIKNTN 312

Query: 379 DLSNFLVIFP 388
           D ++  +I P
Sbjct: 313 DANSCQIIIP 322

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Canis familiaris (taxid: 9615)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	416
224113201	553	predicted protein [Populus trichocarpa]	0.971	0.730	0.667	1e-157
359476981	556	PREDICTED: rab proteins geranylgeranyltr	0.971	0.726	0.661	1e-154
255561411	551	protein with unknown function [Ricinus c	0.963	0.727	0.647	1e-148
147798203	812	hypothetical protein VITISV_019372 [Viti	0.971	0.497	0.571	1e-142
356496561	553	PREDICTED: rab proteins geranylgeranyltr	0.954	0.717	0.624	1e-140
449456881	543	PREDICTED: rab proteins geranylgeranyltr	0.949	0.727	0.608	1e-140
20453227	563	AT3g06540/F5E6_13 [Arabidopsis thaliana]	0.978	0.722	0.6	1e-140
22330883	563	Rab escort protein [Arabidopsis thaliana	0.978	0.722	0.6	1e-139
356538383	551	PREDICTED: rab proteins geranylgeranyltr	0.954	0.720	0.617	1e-139
357484143	552	Rab proteins geranylgeranyltransferase c	0.947	0.713	0.598	1e-139

>gi|224113201|ref|XP_002332635.1| predicted protein [Populus trichocarpa] gi|222832862|gb|EEE71339.1| predicted protein [Populus trichocarpa]

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 285/427 (66%), Positives = 339/427 (79%), Gaps = 23/427 (5%)

Query: 13  PPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHF 72
           PPYP IEPT FDLI +GTGL E +++AAASASGK+VLHLD NPFYGSH+SSLS+ +LT F
Sbjct: 5   PPYPQIEPTTFDLIAVGTGLAECIVAAAASASGKTVLHLDTNPFYGSHYSSLSVPELTSF 64

Query: 73  LNSHSTPSSV---------CPD---------PLYSDVEISNYASRLLSQHPRNFNLDVSG 114
           L S+ST SS           PD         P+YSDVEIS +   L+ ++ R FNLD+ G
Sbjct: 65  LISNSTASSPPSSTSTTTDIPDYSIVNLITQPVYSDVEISCFYPELIEENLRKFNLDLCG 124

Query: 115 PRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLME 174
           PRVLFCAD ++DLMLKSGAS+Y+EFKSIDA+F+ D + KL +VPDSRAAIFKDKSL LME
Sbjct: 125 PRVLFCADKSIDLMLKSGASNYVEFKSIDASFVGDGNGKLWNVPDSRAAIFKDKSLTLME 184

Query: 175 KNQLMRFFKLVQGHL--SLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIA 232
           KNQLMRFFKLVQGHL  ++       ++IS+EDL  PF E+L+KM+LP KI+SI+LYAIA
Sbjct: 185 KNQLMRFFKLVQGHLVATVGAGTSGKMKISDEDLQRPFVEYLSKMRLPPKIRSIILYAIA 244

Query: 233 MADYDQE---VSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRA 289
           MADYDQ+   V + +LKT+DGI+RLALY SS+GRF NA GALIYPIYGQGELPQAF RR+
Sbjct: 245 MADYDQDDMGVCQNLLKTKDGIDRLALYQSSVGRFTNASGALIYPIYGQGELPQAFSRRS 304

Query: 290 AVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQL 349
           AVKGC++VLRMPV +LL +++SGSYKGVRLASGQDI S KLVLDPSFT+    AS    L
Sbjct: 305 AVKGCIHVLRMPVTALLMEKDSGSYKGVRLASGQDIFSQKLVLDPSFTLASPSASPSDLL 364

Query: 350 QESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNL 409
            ESF   S  D KGKVARGICITR+SLKPD+SN LV++PPRSL+PEQ+TSIR LQ+ GNL
Sbjct: 365 HESFNFLSTRDVKGKVARGICITRNSLKPDMSNLLVVYPPRSLYPEQITSIRALQISGNL 424

Query: 410 AVCPLGM 416
           AVCPLGM
Sbjct: 425 AVCPLGM 431

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476981|ref|XP_002273131.2| PREDICTED: rab proteins geranylgeranyltransferase component A 2-like [Vitis vinifera] gi|296088658|emb|CBI37649.3| unnamed protein product [Vitis vinifera]

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 285/431 (66%), Positives = 337/431 (78%), Gaps = 27/431 (6%)

Query: 12  VPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTH 71
            P YPPIEPT FDLIV+GTGLP+SVI+AAAS++GKSVLHLD N FYGSHFSSL++ + + 
Sbjct: 4   TPSYPPIEPTDFDLIVVGTGLPQSVIAAAASSAGKSVLHLDSNSFYGSHFSSLNLDEFSS 63

Query: 72  FLNSHST--------PSSVCPD------------PLYSDVEISNYASRLLSQHPRNFNLD 111
           FL S S         PSSV  D            P+YSDVEI++++S  + +H R FNLD
Sbjct: 64  FLTSQSAVHSSHPNPPSSVAADAAEYVALDLKTRPMYSDVEITSHSSDPV-EHSRKFNLD 122

Query: 112 VSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLG 171
           VSGPRVLFCAD AVDLMLKSGAS YLEFKSIDA+F+ DAD +  +VPDSRAAIFKD+SL 
Sbjct: 123 VSGPRVLFCADAAVDLMLKSGASQYLEFKSIDASFVCDADGRFSTVPDSRAAIFKDRSLS 182

Query: 172 LMEKNQLMRFFKLVQGHLSLDESEEN--NVRISEEDLDSPFAEFLTKMKLPHKIKSIVLY 229
           L EKNQLMRFFKL+QGHL+  +  EN  N RISE+DL+SPF EFL KM+LP KIKS++LY
Sbjct: 183 LTEKNQLMRFFKLIQGHLAASDEAENDSNARISEDDLESPFVEFLNKMRLPPKIKSMILY 242

Query: 230 AIAMADYDQ---EVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFC 286
           AIAMADYDQ   EV + VL T+ GI+RLALY+SS+GRF NALGALIYPIYGQGEL QAFC
Sbjct: 243 AIAMADYDQDSIEVCKDVLDTKIGIDRLALYHSSVGRFPNALGALIYPIYGQGELTQAFC 302

Query: 287 RRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSH 346
           RRAAVKGC+YVLRMPVI+LL ++ SG  KGVRLASGQDI S KL++DPSF VP  +A S 
Sbjct: 303 RRAAVKGCIYVLRMPVIALLMEKESGHCKGVRLASGQDIFSQKLLVDPSFIVPVPVAPSQ 362

Query: 347 QQ-LQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQL 405
              + ES Q  +L D K KVARGICI +SSLKPD+SNF+ ++PPRSL+PEQ  +IR +Q+
Sbjct: 363 PDCMPESSQVINLVDAKQKVARGICIMKSSLKPDVSNFVFVYPPRSLYPEQAMAIRAVQI 422

Query: 406 GGNLAVCPLGM 416
           G NL VCP GM
Sbjct: 423 GSNLGVCPSGM 433

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561411|ref|XP_002521716.1| protein with unknown function [Ricinus communis] gi|223539107|gb|EEF40703.1| protein with unknown function [Ricinus communis]

 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 277/428 (64%), Positives = 338/428 (78%), Gaps = 27/428 (6%)

Query: 13  PPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHF 72
           P YP I+PT FDLI+IGTGL ES+I+AAASASGKSVLH+D N FYGSHFSSLSI DLT F
Sbjct: 5   PSYPSIDPTTFDLILIGTGLSESIIAAAASASGKSVLHIDQNKFYGSHFSSLSIPDLTSF 64

Query: 73  LNSHS----------------TPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPR 116
           LNS+S                T  ++    LYS+VEIS++++ L+ Q+   F+LD+SGPR
Sbjct: 65  LNSNSVPTPSPPPPQTPHPDFTVVNLTTQSLYSNVEISSFSNELIEQNCSKFSLDISGPR 124

Query: 117 VLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKN 176
           VL+CAD+++DLM+K+GA+ Y+EFKSIDA+F+ D + KL +VPDSRAAIFKDKSL LMEKN
Sbjct: 125 VLYCADNSIDLMIKTGANQYVEFKSIDASFVGDENGKLWNVPDSRAAIFKDKSLSLMEKN 184

Query: 177 QLMRFFKLVQGHLSLDESEEN----NVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIA 232
           +LMRFFKLVQ  ++ +E++E     +VRISE+DL+SPF +FL KMKL  KIKSI+LYAI 
Sbjct: 185 RLMRFFKLVQSQIATNENQEQQEEEDVRISEQDLESPFVDFLNKMKLSSKIKSIILYAIV 244

Query: 233 MADYDQE----VSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRR 288
           MAD DQE     ++ +LKT+DGI+RLALY SSIGRF NALGA IYPIYGQGELP AFCRR
Sbjct: 245 MADCDQENTGGANKDLLKTKDGIDRLALYQSSIGRFTNALGAFIYPIYGQGELPPAFCRR 304

Query: 289 AAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQ 348
           AAVKGC+YVLRMPV++LL D+N+G+YKG+RLASGQ+I S KLVLDPSFTVP   +S    
Sbjct: 305 AAVKGCIYVLRMPVVALLMDKNNGNYKGIRLASGQEIYSQKLVLDPSFTVP---SSPSDP 361

Query: 349 LQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGN 408
           L ESF   S+ D K KVAR ICIT+ SLKPD SNFL ++PPRSL+PEQ TSIR LQ+GG+
Sbjct: 362 LHESFCFLSVRDVKQKVARAICITKCSLKPDTSNFLAVYPPRSLYPEQSTSIRALQMGGS 421

Query: 409 LAVCPLGM 416
           LAVCP  M
Sbjct: 422 LAVCPTNM 429

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147798203|emb|CAN62777.1| hypothetical protein VITISV_019372 [Vitis vinifera]

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 284/497 (57%), Positives = 336/497 (67%), Gaps = 93/497 (18%)

Query: 12  VPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTH 71
            P YPPIEPT FDLIV+GTGLP+SVI+AAAS++GKSVLHLD N FYGSHFSSL++ + + 
Sbjct: 4   TPSYPPIEPTDFDLIVVGTGLPQSVIAAAASSAGKSVLHLDSNSFYGSHFSSLNLDEFSS 63

Query: 72  FLNSHST--------PSSVCPD------------PLYSDVEISNYASRLLSQHPRNFNLD 111
           FL S S         PSSV  D            P+YSDVEI++++S  L +H R FNLD
Sbjct: 64  FLTSQSAVYSSHPNPPSSVTADAAEYVALDLKTRPMYSDVEITSHSSDPL-EHSRKFNLD 122

Query: 112 VSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLG 171
           VSGPRVLFCAD AVDLMLKSGAS YLEFKSIDA+F+ DAD +  +VPDSRAAIFKD+SL 
Sbjct: 123 VSGPRVLFCADAAVDLMLKSGASQYLEFKSIDASFVCDADGRFSTVPDSRAAIFKDRSLS 182

Query: 172 LMEKNQLMRFFKLVQGHLSLDESEEN--NVRISEEDLDSPFAEFLTKMKLPHKIKS---- 225
           L EKNQLMRFFKL+QGHL+  +  EN  N RISE+DL+SPF EFL KM+LP KIKS    
Sbjct: 183 LTEKNQLMRFFKLIQGHLAASDEAENDSNARISEDDLESPFVEFLNKMRLPPKIKSYRSH 242

Query: 226 ----------------------------IVLYAIAMADYDQ---EVSEYVLKTRDGINRL 254
                                       ++LYAIAMADYDQ   EV + VL T+ GI+RL
Sbjct: 243 RPSLSFYANSLLGMYKMQLKTMRDVSLKMILYAIAMADYDQDSIEVCKDVLDTKIGIDRL 302

Query: 255 ALYNSSIG----------------------------------RFQNALGALIYPIYGQGE 280
           ALY+SS+G                                  +F NALGALIYPIYGQGE
Sbjct: 303 ALYHSSVGSQGRRQVCVDVGFDXGGFFGLIFKVHLYKSQNIRKFPNALGALIYPIYGQGE 362

Query: 281 LPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPG 340
           L QAFCRRAAVKGC+YVLRMPVI+LL ++ SG  KGVRLASGQDI S KL++DPSF VP 
Sbjct: 363 LTQAFCRRAAVKGCIYVLRMPVIALLMEKESGHCKGVRLASGQDIFSQKLLVDPSFIVPV 422

Query: 341 SLASSHQQ-LQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTS 399
            +A S    + ES Q  +L   K KVARGICI +SSLKPD+SNF+ ++PPRSL+PEQ  +
Sbjct: 423 PVAPSQPDCMPESSQVINLVYAKQKVARGICIMKSSLKPDVSNFVFVYPPRSLYPEQAMA 482

Query: 400 IRVLQLGGNLAVCPLGM 416
           IR +Q+G NL VCP GM
Sbjct: 483 IRAVQIGSNLGVCPSGM 499

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496561|ref|XP_003517135.1| PREDICTED: rab proteins geranylgeranyltransferase component A-like [Glycine max]

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 264/423 (62%), Positives = 321/423 (75%), Gaps = 26/423 (6%)

Query: 15  YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLN 74
           YPPI+P  FDLI++GT L ESVI+AAASA GK++LHLDPN FYGSHF+SLS+ DLT +L 
Sbjct: 10  YPPIDPVNFDLIIVGTALSESVIAAAASAVGKTILHLDPNSFYGSHFASLSLHDLTSYLT 69

Query: 75  S-HSTPS----------------SVCPDPLYSDVEISNY-ASRLLSQHPRNFNLDVSGPR 116
           S HS PS                 +   PL +D E + Y  S  LS++ R FN+D+ GPR
Sbjct: 70  SPHSLPSAATAAASSDSDDIVVVDLVHQPLCTDAETATYDESAFLSENSRKFNIDLGGPR 129

Query: 117 VLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKN 176
            LFCAD  +DL++KSGA+ YLEFK ID +F+ +A+A L +VPDSR AIF+DK L L EKN
Sbjct: 130 ALFCADKTIDLLMKSGAAQYLEFKGIDESFVYEANAGLANVPDSRGAIFRDKKLSLKEKN 189

Query: 177 QLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADY 236
           QLMRFFKLVQ HL  D+++E   +I +EDL+ PF  FL KMKLP KIKSI+LYAIAM DY
Sbjct: 190 QLMRFFKLVQQHL--DDTQEE--KIPKEDLEIPFVSFLEKMKLPPKIKSILLYAIAMLDY 245

Query: 237 DQ---EVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKG 293
           DQ   EV E +LKT+DGI+ LA Y+SS+GRF NA GAL+YPIYG+GELPQAFCRRAAVKG
Sbjct: 246 DQDNNEVCEELLKTKDGIDCLAQYSSSVGRFPNAPGALLYPIYGEGELPQAFCRRAAVKG 305

Query: 294 CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQL-QES 352
           C+YVLRMPV+SLL D+ +GSYKGVRLASGQD+ SH+L+LDPSFT+P  L+ S      E 
Sbjct: 306 CIYVLRMPVVSLLMDKVTGSYKGVRLASGQDLYSHQLILDPSFTIPSPLSLSLGDFPSER 365

Query: 353 FQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVC 412
            Q  S  D KG VARGICITRSS+KPD+S+  V++PPRSL+PEQVTSI+ LQ+G NLAVC
Sbjct: 366 LQMLSQRDIKGMVARGICITRSSIKPDVSSCSVVYPPRSLYPEQVTSIKALQIGSNLAVC 425

Query: 413 PLG 415
           P G
Sbjct: 426 PAG 428

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456881|ref|XP_004146177.1| PREDICTED: rab proteins geranylgeranyltransferase component A 1-like [Cucumis sativus]

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 258/424 (60%), Positives = 323/424 (76%), Gaps = 29/424 (6%)

Query: 15  YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLN 74
           +P I+P+ FDLIV+GTGLP+S+++AAASASGK+VLHLDPNP+YG HF++L + DLT FLN
Sbjct: 7   HPLIDPSTFDLIVVGTGLPQSILAAAASASGKTVLHLDPNPYYGGHFATLPLHDLTSFLN 66

Query: 75  SHSTPSSVCPDP-------------------LYSDVEISNYASRLLSQHPRNFNLDVSGP 115
           S S P  + P P                   LYSDVEIS+YA  +L +H R FN+D++GP
Sbjct: 67  SASAP--LLPSPPLASYDNQDYVSVDLQTRSLYSDVEISSYAPEVLQEHARKFNIDLAGP 124

Query: 116 RVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEK 175
           RVLFCAD  +D +LK G + YLEFKSIDA+++ D + KL +VP SRAAIFKDKSL L EK
Sbjct: 125 RVLFCADKCIDAVLKVGVNQYLEFKSIDASYLWDQNGKLVNVPGSRAAIFKDKSLSLTEK 184

Query: 176 NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMAD 235
           NQLMRFFKLVQ HL   E  E++ +IS+EDLD+PF++FL K++LP K+KSI+LYAI+MAD
Sbjct: 185 NQLMRFFKLVQKHLDPAEDGESS-KISQEDLDTPFSDFLNKLRLPQKMKSIILYAISMAD 243

Query: 236 YDQ---EVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVK 292
            DQ   ++ +  L T++GI RLALY++SIGRFQNA GAL+YPIYGQGEL QAFCRRAAVK
Sbjct: 244 SDQNDNDIGQNRLLTKEGIARLALYHTSIGRFQNAQGALLYPIYGQGELSQAFCRRAAVK 303

Query: 293 GCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQES 352
           GCLYVLRMPV++LL D+++  YKGVRLASGQDI S +LVLDP F VP     S     ES
Sbjct: 304 GCLYVLRMPVVALLKDKSNEQYKGVRLASGQDIFSQQLVLDPCFIVPQLFKLS----LES 359

Query: 353 FQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVC 412
            Q  S  D   KVARGICIT+ S+  D+ N L+++PP++LFPEQV+S+RVLQ+GGNLAVC
Sbjct: 360 LQDVSSRDVNRKVARGICITKHSIVSDVKNCLLVYPPKTLFPEQVSSVRVLQIGGNLAVC 419

Query: 413 PLGM 416
           P  M
Sbjct: 420 PEDM 423

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20453227|gb|AAM19852.1| AT3g06540/F5E6_13 [Arabidopsis thaliana] gi|23463085|gb|AAN33212.1| At3g06540/F5E6_13 [Arabidopsis thaliana]

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 261/435 (60%), Positives = 337/435 (77%), Gaps = 28/435 (6%)

Query: 10  LPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADL 69
           + +PPYPP++P+ +DLIV+GTG+ ESV++AAAS+SG SVLHLDPNPFYGSHF+SLS+ DL
Sbjct: 2   IDIPPYPPLDPSNYDLIVVGTGVSESVLAAAASSSGSSVLHLDPNPFYGSHFASLSLPDL 61

Query: 70  THFLNSHSTPS--------------------SVCPDPLYSDVEISNYASRLLSQHPRNFN 109
           T FL+S+S                        +    LYS VEIS++ S +L +H R FN
Sbjct: 62  TSFLHSNSVSPPPSPSSPPLPPSNNHDFISVDLVNRSLYSSVEISSFESEILEEHSRRFN 121

Query: 110 LDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKS 169
           +D++GPRV+FCAD +++LMLKSGA++Y+EFKSIDA+F+ D+  +L +VPDSRAAIFKDKS
Sbjct: 122 VDLAGPRVVFCADESINLMLKSGANNYVEFKSIDASFVGDSSGELRNVPDSRAAIFKDKS 181

Query: 170 LGLMEKNQLMRFFKLVQGHL--SLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIV 227
           L L+EKNQLM+FFKLVQ HL  S ++ +   V+ISEED++SPF +FL+KM+LP KIKSI+
Sbjct: 182 LTLLEKNQLMKFFKLVQSHLASSTEKDDSTTVKISEEDMESPFVDFLSKMRLPPKIKSII 241

Query: 228 LYAIAMADYDQEVSE---YVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQA 284
           LYAIAM DYDQ+ +E   ++LKT++GI+RLALY +S+GRF NALGALIYPIYGQGELPQA
Sbjct: 242 LYAIAMLDYDQDNTETCRHLLKTKEGIDRLALYITSMGRFSNALGALIYPIYGQGELPQA 301

Query: 285 FCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVP-GSLA 343
           FCRRAAVKGC+YVLRMP+ +LL D+ +G YKGVRLASGQ+I S KL+LDP  TV   SL+
Sbjct: 302 FCRRAAVKGCIYVLRMPITALLLDKETGGYKGVRLASGQEIFSQKLILDPCVTVGLESLS 361

Query: 344 SSHQQLQESFQAFSLSD--NKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIR 401
           S   Q  E+          NK K+ARG+C+ R S+K ++SN LV++PP+SLFPEQ+T+IR
Sbjct: 362 SLTDQQNETLNVLVPKSMINKEKIARGVCVIRGSVKANVSNALVVYPPKSLFPEQLTAIR 421

Query: 402 VLQLGGNLAVCPLGM 416
           VLQLG  LAVCP  M
Sbjct: 422 VLQLGSGLAVCPADM 436

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22330883|ref|NP_187306.2| Rab escort protein [Arabidopsis thaliana] gi|51317418|gb|AAN03631.2|AF409086_1 Rab escort protein [Arabidopsis thaliana] gi|332640889|gb|AEE74410.1| Rab escort protein [Arabidopsis thaliana]

 Score =  503 bits (1294), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 261/435 (60%), Positives = 337/435 (77%), Gaps = 28/435 (6%)

Query: 10  LPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADL 69
           + +PPYPP++P+ +DLIV+GTG+ ESV++AAAS+SG SVLHLDPNPFYGSHF+SLS+ DL
Sbjct: 2   IDIPPYPPLDPSNYDLIVVGTGVSESVLAAAASSSGSSVLHLDPNPFYGSHFASLSLPDL 61

Query: 70  THFLNSHSTPS--------------------SVCPDPLYSDVEISNYASRLLSQHPRNFN 109
           T FL+S+S                        +    LYS VEIS++ S +L +H R FN
Sbjct: 62  TSFLHSNSVSPPPSPSSPPLPPSNNHDFISVDLVNRSLYSSVEISSFESEILEEHSRRFN 121

Query: 110 LDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKS 169
           +D++GPRV+FCAD +++LMLKSGA++Y+EFKSIDA+F+ D+  +L +VPDSRAAIFKDKS
Sbjct: 122 VDLAGPRVVFCADESINLMLKSGANNYVEFKSIDASFVGDSSGELRNVPDSRAAIFKDKS 181

Query: 170 LGLMEKNQLMRFFKLVQGHL--SLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIV 227
           L L+EKNQLM+FFKLVQ HL  S ++ +   V+ISEED++SPF +FL+KM+LP KIKSI+
Sbjct: 182 LTLLEKNQLMKFFKLVQSHLASSTEKDDSTTVKISEEDMESPFVDFLSKMRLPPKIKSII 241

Query: 228 LYAIAMADYDQEVSE---YVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQA 284
           LYAIAM DYDQ+ +E   ++LKT++GI+RLALY +S+GRF NALGALIYPIYGQGELPQA
Sbjct: 242 LYAIAMLDYDQDNTETCRHLLKTKEGIDRLALYITSMGRFSNALGALIYPIYGQGELPQA 301

Query: 285 FCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVP-GSLA 343
           FCRRAAVKGC+YVLRMP+ +LL D+ +G YKGVRLASGQ+I S KL+LDP  TV   SL+
Sbjct: 302 FCRRAAVKGCIYVLRMPITALLLDKETGGYKGVRLASGQEIFSQKLILDPCVTVGLESLS 361

Query: 344 SSHQQLQESFQAFSLSD--NKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIR 401
           S   Q  E+          NK K+ARG+C+ R S+K ++SN LV++PP+SLFPEQ+T+IR
Sbjct: 362 SLTDQQNETLSVLVPKSMINKEKIARGVCVIRGSVKANVSNALVVYPPKSLFPEQLTAIR 421

Query: 402 VLQLGGNLAVCPLGM 416
           VLQLG  LAVCP  M
Sbjct: 422 VLQLGSGLAVCPADM 436

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538383|ref|XP_003537683.1| PREDICTED: rab proteins geranylgeranyltransferase component A-like [Glycine max]

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 260/421 (61%), Positives = 322/421 (76%), Gaps = 24/421 (5%)

Query: 15  YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLN 74
           YPPI+P  FDLI++GT L ESVI+AAASA GK++LHLDPN FYGSHF+SLS+ DLT +L+
Sbjct: 10  YPPIDPVNFDLIIVGTALSESVIAAAASAVGKTILHLDPNSFYGSHFASLSLHDLTSYLS 69

Query: 75  S-HSTPSSVCP--------------DPLYSDVEISNY-ASRLLSQHPRNFNLDVSGPRVL 118
           S HS PS+                  PL SD EI+ Y  S  LS++ R F++D+ GP+ L
Sbjct: 70  SPHSLPSAAATTTDSDDVVVIDFVQQPLCSDAEIATYDESAFLSENSRKFSIDLGGPKAL 129

Query: 119 FCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL 178
           FCAD  +DL++KSGA+ YLEFK ID +F+ +A+A L +VPDSR +IF+DK L L EKNQL
Sbjct: 130 FCADKTIDLLMKSGAAQYLEFKGIDESFVYEANAGLANVPDSRGSIFRDKKLSLKEKNQL 189

Query: 179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQ 238
           MRFFKLVQ HL  D+++E   +I EEDL+  F  FL KMKLP KIKSI+LYAIAM DYDQ
Sbjct: 190 MRFFKLVQQHL--DDTQEE--KIPEEDLEIAFVSFLEKMKLPPKIKSILLYAIAMLDYDQ 245

Query: 239 EVSEY---VLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCL 295
           + +E    +LKT+DGI+ LALY+SS+GRF NA GAL+YPIYG+GELPQAFCRRAAVKGC+
Sbjct: 246 DNNEVCIELLKTKDGIDSLALYSSSVGRFPNAPGALLYPIYGEGELPQAFCRRAAVKGCI 305

Query: 296 YVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQL-QESFQ 354
           YVLRM V+SLL D+ +GSYKGVRLASGQD+ SH+L+LDPSF +P  L+SS +    E  Q
Sbjct: 306 YVLRMSVVSLLMDKVTGSYKGVRLASGQDLYSHQLILDPSFMIPSPLSSSPRDFPSEKLQ 365

Query: 355 AFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPL 414
                D KG VARGICITRSS+KPD+SN  V++PPRSL+PEQ+TSI+ LQ+G NLAVCP 
Sbjct: 366 MLGQRDIKGMVARGICITRSSIKPDVSNCSVVYPPRSLYPEQLTSIKALQIGSNLAVCPA 425

Query: 415 G 415
           G
Sbjct: 426 G 426

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357484143|ref|XP_003612358.1| Rab proteins geranylgeranyltransferase component A [Medicago truncatula] gi|355513693|gb|AES95316.1| Rab proteins geranylgeranyltransferase component A [Medicago truncatula]

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 253/423 (59%), Positives = 318/423 (75%), Gaps = 29/423 (6%)

Query: 14  PYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFL 73
           PYPPI+P  FDLI++GTGL ES+ISAAASA GK++LHLDPNPFYGSHF+SLS  DL   L
Sbjct: 9   PYPPIDPINFDLIIVGTGLSESIISAAASAVGKTILHLDPNPFYGSHFASLSFEDLISHL 68

Query: 74  NS----------------HSTPSSVCPDPLYSDVEISN----YASRLLSQHPRNFNLDVS 113
           NS                  T  ++    ++SD E ++      S+ L ++ R FNLD++
Sbjct: 69  NSPPKYITATATATTDNSDYTTVNLIQQTIFSDAEFNSCNSIEESQFLRENSRKFNLDLA 128

Query: 114 GPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLM 173
           GPR LF AD  +DL+LKSGA+ YLEFK IDA+ + + +  L +VPDSR AIF+DK+L L 
Sbjct: 129 GPRALFSADKTIDLLLKSGAAQYLEFKGIDASLVYNTNEGLVNVPDSRGAIFRDKNLSLK 188

Query: 174 EKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAM 233
           EKNQLM+FFKLVQ HL  +E E    +ISEED++S F  +L K+ LP KIK+I+LYAIAM
Sbjct: 189 EKNQLMKFFKLVQQHLGGNEDE----KISEEDMESSFVSYLEKLGLPSKIKAILLYAIAM 244

Query: 234 ADYDQE---VSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAA 290
            D+DQE   V + +LKT+DGI+RLA Y+SS+GR+ NA GAL+YPIYG+GELPQAFCRRAA
Sbjct: 245 VDFDQENGGVCKDLLKTKDGIDRLAQYSSSVGRYPNAPGALLYPIYGEGELPQAFCRRAA 304

Query: 291 VKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQ 350
           VKGC+YVLRMPVISLL D+ +GSYKGVRL+SGQD+ SHKL+LDPSFT+P + + S +   
Sbjct: 305 VKGCIYVLRMPVISLLIDKVTGSYKGVRLSSGQDLYSHKLILDPSFTIPSTPSLSPKDF- 363

Query: 351 ESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLA 410
            S Q  S  D KG VARGICITRSS+KPD+SN  V++PPRSL+P+QVTS+R LQ+G NLA
Sbjct: 364 -SLQMLSHVDIKGMVARGICITRSSIKPDVSNCSVVYPPRSLYPDQVTSVRALQIGSNLA 422

Query: 411 VCP 413
           VCP
Sbjct: 423 VCP 425

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	416
TAIR|locus:2084289	563	REP "AT3G06540" [Arabidopsis t	0.793	0.586	0.633	2e-132
MGI|MGI:101913	621	Chml "choroideremia-like" [Mus	0.627	0.420	0.312	1.5e-39
FB|FBgn0026378	511	Rep "Rab escort protein" [Dros	0.713	0.581	0.337	1.6e-38
UNIPROTKB|P24386	653	CHM "Rab proteins geranylgeran	0.644	0.410	0.305	5.6e-38
UNIPROTKB|E2RKG1	652	CHM "Uncharacterized protein"	0.641	0.409	0.314	1.2e-37
DICTYBASE|DDB_G0280143	661	DDB_G0280143 "Rab escort prote	0.716	0.450	0.283	3.1e-37
UNIPROTKB|K7GR66	653	CHM "Uncharacterized protein"	0.492	0.313	0.330	3.5e-36
MGI|MGI:892979	665	Chm "choroidermia" [Mus muscul	0.641	0.401	0.304	3.9e-36
UNIPROTKB|P26374	656	CHML "Rab proteins geranylgera	0.632	0.400	0.3	1.1e-34
UNIPROTKB|F1S9E9	649	CHML "Uncharacterized protein"	0.639	0.409	0.296	1.3e-34

TAIR|locus:2084289 REP "AT3G06540" [Arabidopsis thaliana (taxid:3702)]

 Score = 1095 (390.5 bits), Expect = 2.0e-132, Sum P(2) = 2.0e-132
 Identities = 214/338 (63%), Positives = 274/338 (81%)

Query:    87 LYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATF 146
             LYS VEIS++ S +L +H R FN+D++GPRV+FCAD +++LMLKSGA++Y+EFKSIDA+F
Sbjct:    99 LYSSVEISSFESEILEEHSRRFNVDLAGPRVVFCADESINLMLKSGANNYVEFKSIDASF 158

Query:   147 MLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHL--SLDESEENNVRISEE 204
             + D+  +L +VPDSRAAIFKDKSL L+EKNQLM+FFKLVQ HL  S ++ +   V+ISEE
Sbjct:   159 VGDSSGELRNVPDSRAAIFKDKSLTLLEKNQLMKFFKLVQSHLASSTEKDDSTTVKISEE 218

Query:   205 DLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSE---YVLKTRDGINRLALYNSSI 261
             D++SPF +FL+KM+LP KIKSI+LYAIAM DYDQ+ +E   ++LKT++GI+RLALY +S+
Sbjct:   219 DMESPFVDFLSKMRLPPKIKSIILYAIAMLDYDQDNTETCRHLLKTKEGIDRLALYITSM 278

Query:   262 GRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS 321
             GRF NALGALIYPIYGQGELPQAFCRRAAVKGC+YVLRMP+ +LL D+ +G YKGVRLAS
Sbjct:   279 GRFSNALGALIYPIYGQGELPQAFCRRAAVKGCIYVLRMPITALLLDKETGGYKGVRLAS 338

Query:   322 GQDILSHKLVLDPSFTVP-GSLASSHQQLQESFQAFSLSD--NKGKVARGICITRSSLKP 378
             GQ+I S KL+LDP  TV   SL+S   Q  E+          NK K+ARG+C+ R S+K 
Sbjct:   339 GQEIFSQKLILDPCVTVGLESLSSLTDQQNETLSVLVPKSMINKEKIARGVCVIRGSVKA 398

Query:   379 DLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGM 416
             ++SN LV++PP+SLFPEQ+T+IRVLQLG  LAVCP  M
Sbjct:   399 NVSNALVVYPPKSLFPEQLTAIRVLQLGSGLAVCPADM 436

GO:0005093 "Rab GDP-dissociation inhibitor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0015031 "protein transport" evidence=ISS

GO:0017137 "Rab GTPase binding" evidence=IDA

GO:2000541 "positive regulation of protein geranylgeranylation" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

MGI|MGI:101913 Chml "choroideremia-like" [Mus musculus (taxid:10090)]

 Score = 306 (112.8 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
 Identities = 93/298 (31%), Positives = 149/298 (50%)

Query:   118 LFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQ 177
             L+     +DL++KS  S Y EFK++    +   + K+  VP SRA +F  K L ++EK  
Sbjct:   237 LYSQGSLIDLLIKSNVSRYAEFKNV-TRILAFWEGKVEQVPCSRADVFNSKELSMVEKRM 295

Query:   178 LMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYD 237
             LM+F         LD  + ++    ++     F+++L   KL   ++  +L++IAM    
Sbjct:   296 LMKFLTFC-----LDYEQHSDEY--QDFKQCSFSDYLKTKKLTPNLQHFILHSIAMT--- 345

Query:   238 QEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYV 297
                SE    T DG+     +   +GRF N     I+P+YG GE+PQ FCR  AV G +Y 
Sbjct:   346 ---SESSCTTLDGLQATKNFLQCLGRFGNT--PFIFPLYGHGEIPQCFCRMCAVFGGVYC 400

Query:   298 LRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFS 357
             LR  V  L+ D++SG  KG+  A GQ I ++  +++ S+ +P    S+ Q  Q       
Sbjct:   401 LRHKVQCLVVDKDSGRCKGIIDAFGQRISANYFIVEDSY-LPKETCSNVQYKQ------- 452

Query:   358 LSDNKGKVARGICIT-RSSLKPDLSN--FLVIFPPRSLFPEQVTSIRVLQLGGNLAVC 412
                    ++R + IT +S LK D      +++ PP  L P   TS+RV++L  +   C
Sbjct:   453 -------ISRAVLITDQSILKTDSDQQISILVVPP--LEPG-TTSVRVMELCSSTMTC 500

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005968 "Rab-protein geranylgeranyltransferase complex" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

FB|FBgn0026378 Rep "Rab escort protein" [Drosophila melanogaster (taxid:7227)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 109/323 (33%), Positives = 167/323 (51%)

Query:    23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
             FDL+VIGTG  ES I+AA S  GKSVLHLD N +YG  +SS S+  L   L+    P S 
Sbjct:     9 FDLVVIGTGFTESCIAAAGSRIGKSVLHLDSNEYYGDVWSSFSMDALCARLDQEVEPHSA 68

Query:    83 CPDPLY--------SDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGAS 134
               +  Y        S+ +  ++    +    R F+LD+  PR+L+ A   V L++KS   
Sbjct:    69 LRNARYTWHSMEKESETDAQSWNRDSVLAKSRRFSLDLC-PRILYAAGELVQLLIKSNIC 127

Query:   135 HYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDES 194
              Y EF+++D   M   + ++ SVP SR+ +F  K+L ++EK  LM+F      +   D+ 
Sbjct:   128 RYAEFRAVDHVCMRH-NGEIVSVPCSRSDVFNTKTLTIVEKRLLMKFLTACNDY-GEDKC 185

Query:   195 EENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRL 254
              E+++    E     F E+L   ++  KI S V+ AIAM        E       G+ R 
Sbjct:   186 NEDSL----EFRGRTFLEYLQAQRVTEKISSCVMQAIAMCGPSTSFEE-------GMQRT 234

Query:   255 ALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSY 314
               +  S+GR+ N     ++P+YG GELPQ FCR  AV G +Y L+  V  +  D NS  +
Sbjct:   235 QRFLGSLGRYGNT--PFLFPMYGCGELPQCFCRLCAVYGGIYCLKRAVDDIALDSNSNEF 292

Query:   315 KGVRLASGQDILSHKLVLDPSFT 337
               +  ++G+ + +  +V  P +T
Sbjct:   293 --LLSSAGKTLRAKNVVSAPGYT 313

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=ISS

GO:0017137 "Rab GTPase binding" evidence=ISS;NAS

GO:0005968 "Rab-protein geranylgeranyltransferase complex" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0000922 "spindle pole" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0016020 "membrane" evidence=ISS

GO:0005818 "aster" evidence=IDA

GO:0007269 "neurotransmitter secretion" evidence=NAS

GO:0016192 "vesicle-mediated transport" evidence=NAS

GO:0008021 "synaptic vesicle" evidence=NAS

UNIPROTKB|P24386 CHM "Rab proteins geranylgeranyltransferase component A 1" [Homo sapiens (taxid:9606)]

 Score = 288 (106.4 bits), Expect = 5.6e-38, Sum P(2) = 5.6e-38
 Identities = 92/301 (30%), Positives = 144/301 (47%)

Query:   116 RVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEK 175
             ++L+     +DL++KS  S Y EFK+I    +   + ++  VP SRA +F  K L ++EK
Sbjct:   234 KLLYSRGLLIDLLIKSNVSRYAEFKNI-TRILAFREGRVEQVPCSRADVFNSKQLTMVEK 292

Query:   176 NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMAD 235
               LM+F      +    E   +  +  EE     F E+L   KL   ++ IV+++IAM  
Sbjct:   293 RMLMKFLTFCMEY----EKYPDEYKGYEE---ITFYEYLKTQKLTPNLQYIVMHSIAMT- 344

Query:   236 YDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCL 295
                  SE    T DG+     +   +GR+ N     ++P+YGQGELPQ FCR  AV G +
Sbjct:   345 -----SETASSTIDGLKATKNFLHCLGRYGNT--PFLFPLYGQGELPQCFCRMCAVFGGI 397

Query:   296 YVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQA 355
             Y LR  V  L+ D+ S   K +    GQ I+S   +++ S+  P ++ S  Q  Q     
Sbjct:   398 YCLRHSVQCLVVDKESRKCKAIIDQFGQRIISEHFLVEDSY-FPENMCSRVQYRQ----- 451

Query:   356 FSLSDNKGKVARGICIT-RSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPL 414
                      ++R + IT RS LK D    + I    +  P    ++RV++L  +   C  
Sbjct:   452 ---------ISRAVLITDRSVLKTDSDQQISILTVPAEEPGTF-AVRVIELCSSTMTCMK 501

Query:   415 G 415
             G
Sbjct:   502 G 502

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

GO:0005968 "Rab-protein geranylgeranyltransferase complex" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

GO:0050896 "response to stimulus" evidence=IEA

GO:0001568 "blood vessel development" evidence=IEA

GO:0018344 "protein geranylgeranylation" evidence=TAS

UNIPROTKB|E2RKG1 CHM "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 292 (107.8 bits), Expect = 1.2e-37, Sum P(2) = 1.2e-37
 Identities = 95/302 (31%), Positives = 143/302 (47%)

Query:   116 RVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEK 175
             ++L+     +DL++KS  S Y EFK+I    +   + ++  VP SRA +F  K L ++EK
Sbjct:   233 KLLYSRGLLIDLLIKSNVSRYAEFKNI-TRILAFREGRVEQVPCSRADVFNSKQLTMVEK 291

Query:   176 NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMAD 235
               LM+F      +    E   +  +  EE     F+E+L   KL   ++  VL++IAM  
Sbjct:   292 RMLMKFLTFCMEY----EKHPDEYKAYEE---ITFSEYLKTQKLTPNLQYFVLHSIAMT- 343

Query:   236 YDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCL 295
                  SE    T DG+     +   +GR+ N     ++P+YGQGELPQ FCR  AV G +
Sbjct:   344 -----SETASNTIDGLKATKNFLHCLGRYGNT--PFLFPLYGQGELPQCFCRMCAVFGGI 396

Query:   296 YVLRMPVISLLTDQNSGSYKGVRLASGQDILS-HKLVLDPSFTVPGSLASSHQQLQESFQ 354
             Y LR  V  L+ D+ S   K +    GQ I+S H LV D  F+       SH Q ++   
Sbjct:   397 YCLRHSVQCLVVDKESRKCKAIIDQFGQRIISKHFLVEDSYFS---ENTCSHVQYRQ--- 450

Query:   355 AFSLSDNKGKVARGICIT-RSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCP 413
                       ++R + IT RS LK D    + I       P    ++RV++L  +   C 
Sbjct:   451 ----------ISRSVLITDRSVLKTDSDQQISILTVPGEEPGTF-AVRVIELCSSTMTCM 499

Query:   414 LG 415
              G
Sbjct:   500 KG 501

GO:0001568 "blood vessel development" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005968 "Rab-protein geranylgeranyltransferase complex" evidence=IEA

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

DICTYBASE|DDB_G0280143 DDB_G0280143 "Rab escort protein (REP)" [Dictyostelium discoideum (taxid:44689)]

 Score = 314 (115.6 bits), Expect = 3.1e-37, Sum P(2) = 3.1e-37
 Identities = 92/324 (28%), Positives = 162/324 (50%)

Query:    91 VEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDA 150
             +++   + + L +  R F++D+S P +L+     V L++ S AS YLEFKS+D  ++   
Sbjct:   162 IDVPLVSDKSLEELGRLFSIDIS-PTLLYGRGALVKLLISSSASRYLEFKSLDQNYLF-T 219

Query:   151 DAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLV-----QGHLSLDESE-ENNVRISEE 204
             + K+  +P ++ +IFKD +  L EK  +M+F + +     +G   LD++E E + ++S  
Sbjct:   220 NGKVHEIPSTKGSIFKDSTFSLKEKRLIMKFMESIRELKKEGS-DLDDAEKEAHFKLSII 278

Query:   205 DLDSPFAEFLT---KMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSI 261
             +L   F  F+      K    ++S +LY +++   D E     L+T  GI  + LY SS+
Sbjct:   279 ELGKQFKSFIDYIKSFKFTQLVESFILYGLSLIHEDLE--SIPLET--GIESVFLYTSSL 334

Query:   262 GRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS 321
               +   +   + P YG G++PQAFCR  AV G  YVL   V S+  +Q +G  K +  + 
Sbjct:   335 LVY--GVSPFLIPYYGVGDIPQAFCRLCAVFGGSYVLGRTVDSIQFNQETGKVKSIICSE 392

Query:   322 GQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLS 381
             GQ I +   +  P +    +++SS   L            +   +R I I  S +    +
Sbjct:   393 GQTIQTTHFITSPKYL--NTISSSQNNL-----ILPQKTIRKTYSRFIGIIESKIIGTQN 445

Query:   382 NFLVIFPPRSLFPEQVTSIRVLQL 405
             +  +  PP+S+   +   I +LQL
Sbjct:   446 DSFITIPPKSIGNNK-NVINILQL 468

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=ISS

GO:0018344 "protein geranylgeranylation" evidence=ISS

GO:0017137 "Rab GTPase binding" evidence=ISS

GO:0005968 "Rab-protein geranylgeranyltransferase complex" evidence=ISS

UNIPROTKB|K7GR66 CHM "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 285 (105.4 bits), Expect = 3.5e-36, Sum P(2) = 3.5e-36
 Identities = 73/221 (33%), Positives = 114/221 (51%)

Query:   116 RVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEK 175
             ++L+     +DL++KS  S Y EFK+I    +   + ++  VP SRA +F  K L ++EK
Sbjct:   234 KLLYSRGLLIDLLIKSNVSRYAEFKNI-TRILAFREGRVEQVPCSRADVFNSKQLTMVEK 292

Query:   176 NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMAD 235
               LM+F      +    E   +  +  EE     F+E+L   KL   ++  VL++IAM  
Sbjct:   293 RMLMKFLTFCMDY----EEYPDEYKAYEE---ISFSEYLKTQKLTPNLQYFVLHSIAMT- 344

Query:   236 YDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCL 295
                  SE    T DG+     +   +GR+ N     ++P+YGQGELPQ FCR  AV G +
Sbjct:   345 -----SETASSTIDGLKATQNFLHCLGRYGNT--PFLFPLYGQGELPQCFCRMCAVFGGI 397

Query:   296 YVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSF 336
             Y LR  V  L+ D+ SG  K +    GQ I++   +++ S+
Sbjct:   398 YCLRHSVQCLVVDKESGKCKAIIDHFGQRIIAKHFIVEDSY 438

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005968 "Rab-protein geranylgeranyltransferase complex" evidence=IEA

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

MGI|MGI:892979 Chm "choroidermia" [Mus musculus (taxid:10090)]

 Score = 285 (105.4 bits), Expect = 3.9e-36, Sum P(2) = 3.9e-36
 Identities = 92/302 (30%), Positives = 144/302 (47%)

Query:   116 RVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEK 175
             ++L+     +DL++KS  S Y EFK+I    +   +  +  VP SRA +F  K L ++EK
Sbjct:   246 KLLYSRGLLIDLLIKSNVSRYAEFKNI-TRILAFREGTVEQVPCSRADVFNSKQLTMVEK 304

Query:   176 NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMAD 235
               LM+F      +    E   +  +  EE   + F+E+L   KL   ++  VL++IAM  
Sbjct:   305 RMLMKFLTFCVEY----EDHPDEYKAYEE---TTFSEYLKTQKLTPNLQYFVLHSIAMT- 356

Query:   236 YDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCL 295
                  SE    T DG+     +   +GR+ N     ++P+YGQGELPQ FCR  AV G +
Sbjct:   357 -----SETTSSTVDGLKATKKFLQCLGRYGNT--PFLFPLYGQGELPQCFCRMCAVFGGI 409

Query:   296 YVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQA 355
             Y LR  V  L+ D+ S   K +    GQ I+S   V++ S+ +  +  S  Q  Q     
Sbjct:   410 YCLRHSVQCLVVDKESRKCKAIVDQFGQRIISKHFVIEDSY-LSENTCSGVQYRQ----- 463

Query:   356 FSLSDNKGKVARGICITRSS-LKPDLSNFLVIFPPRSLFPEQVT-SIRVLQLGGNLAVCP 413
                      ++R + IT  S LKPD    + I    +   E  + ++RV++L  +   C 
Sbjct:   464 ---------ISRAVLITDGSVLKPDSDQQVSILTVPA--EESGSFAVRVIELCSSTMTCM 512

Query:   414 LG 415
              G
Sbjct:   513 KG 514

GO:0001568 "blood vessel development" evidence=IMP

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005968 "Rab-protein geranylgeranyltransferase complex" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=ISO

UNIPROTKB|P26374 CHML "Rab proteins geranylgeranyltransferase component A 2" [Homo sapiens (taxid:9606)]

 Score = 282 (104.3 bits), Expect = 1.1e-34, Sum P(2) = 1.1e-34
 Identities = 90/300 (30%), Positives = 144/300 (48%)

Query:   116 RVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEK 175
             ++L+     +DL++KS  S Y+EFK++    +   + K+  VP SRA +F  K L ++EK
Sbjct:   236 KLLYSQGLLIDLLIKSDVSRYVEFKNV-TRILAFREGKVEQVPCSRADVFNSKELTMVEK 294

Query:   176 NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMAD 235
               LM+F       L  ++  +      +      F+E+L   KL   ++  VL++IAM  
Sbjct:   295 RMLMKFLTFC---LEYEQHPDEYQAFRQ----CSFSEYLKTKKLTPNLQHFVLHSIAMT- 346

Query:   236 YDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCL 295
                  SE    T DG+N    +   +GRF N     ++P+YGQGE+PQ FCR  AV G +
Sbjct:   347 -----SESSCTTIDGLNATKNFLQCLGRFGNT--PFLFPLYGQGEIPQGFCRMCAVFGGI 399

Query:   296 YVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQA 355
             Y LR  V   + D+ SG  K +    GQ I +   +++ S+ +     S+ Q  Q     
Sbjct:   400 YCLRHKVQCFVVDKESGRCKAIIDHFGQRINAKYFIVEDSY-LSEETCSNVQYKQ----- 453

Query:   356 FSLSDNKGKVARGICIT-RSSLKPDLSN--FLVIFPPRSLFPEQVTSIRVLQLGGNLAVC 412
                      ++R + IT +S LK DL     ++I PP    P    ++RV +L  +   C
Sbjct:   454 ---------ISRAVLITDQSILKTDLDQQTSILIVPPAE--PG-ACAVRVTELCSSTMTC 501

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

GO:0005968 "Rab-protein geranylgeranyltransferase complex" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0007601 "visual perception" evidence=TAS

UNIPROTKB|F1S9E9 CHML "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 292 (107.8 bits), Expect = 1.3e-34, Sum P(2) = 1.3e-34
 Identities = 88/297 (29%), Positives = 146/297 (49%)

Query:   116 RVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEK 175
             ++L+     +DL++KS  S Y EFK++    +   + K+  VP SRA +F  K+L ++EK
Sbjct:   229 KLLYSQGLLIDLLIKSNVSRYAEFKNV-TRILAFREGKVEQVPCSRADVFNSKALTMVEK 287

Query:   176 NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMAD 235
               LM+F         LD   E +    ++ +   F+E+L   KL   ++  VL++IAM  
Sbjct:   288 RMLMKFLTFC-----LDY--ERHPDEYQDFMQCSFSEYLKAKKLTPSLQHFVLHSIAMT- 339

Query:   236 YDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCL 295
                  SE    T DG+     +   +GRF N     ++P+YGQGE+PQ FCR  AV G +
Sbjct:   340 -----SESSCTTIDGLKATKNFLQCLGRFGNT--PFLFPLYGQGEVPQCFCRMCAVFGGI 392

Query:   296 YVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQA 355
             Y LR  V  L+ D+ SG  K +    GQ I +   +++ S+        S  + ++  +A
Sbjct:   393 YCLRHKVQCLVVDKESGRCKAIIDHLGQRISATYFIVEDSYL--SEETCSRVRYKQISRA 450

Query:   356 FSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVC 412
               ++D          + R+  +P +S  +V  PP    P   +++RV +LG +   C
Sbjct:   451 VLITDGS--------VLRADSEPPISVLMV--PPAE--PG-ASAVRVTELGSSTRTC 494

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005968 "Rab-protein geranylgeranyltransferase complex" evidence=IEA

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.256.25.1 hypothetical protein (552 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	416
pfam00996	439	pfam00996, GDI, GDP dissociation inhibitor	2e-56
COG5044	434	COG5044, MRS6, RAB proteins geranylgeranyltransfer	1e-51
PTZ00363	443	PTZ00363, PTZ00363, rab-GDP dissociation inhibitor	9e-49

>gnl|CDD|216232 pfam00996, GDI, GDP dissociation inhibitor

 Score =  191 bits (488), Expect = 2e-56
 Identities = 98/354 (27%), Positives = 158/354 (44%), Gaps = 59/354 (16%)

Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADL-THFLNSHSTPSS 81
           +D+IV+GTGL E ++S   S  GK VLH+D N +YG   +SLS+  L   F      P S
Sbjct: 5   YDVIVLGTGLKECILSGLLSVDGKKVLHIDRNDYYGGESASLSLEQLYARFRGGEEKPPS 64

Query: 82  VCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKS 141
                                   R++N+D+  P+ L      V L++ +  + YLEFK+
Sbjct: 65  K-------------LGRS------RDWNVDLI-PKFLMANGELVKLLIHTDVTRYLEFKA 104

Query: 142 IDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRI 201
           ++ +++     K+  VP +         +G+ EK +  +F   VQ     DE +      
Sbjct: 105 VEGSYVYK-GGKIHKVPANEMEALSSPLMGIFEKRRFRKFLTYVQ---DYDEDDPK---- 156

Query: 202 SEEDLD---SPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN 258
           + + LD       E   K  L       + +A+A+   D  +++        + R+ LY+
Sbjct: 157 THDGLDPRKRTMLEVYKKFGLDENTIDFIGHALALYRDDDYLNQ---PALPTVERIKLYS 213

Query: 259 SSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVR 318
            S+ R+       +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ D+N G   GV+
Sbjct: 214 ESLARYGK--SPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDEIVYDEN-GKVVGVK 270

Query: 319 LASGQDILSHKLVL-DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICI 371
             SG ++   K V+ DPS+  P  +                    G+V R ICI
Sbjct: 271 --SGGEVARAKQVICDPSYF-PDKVRK-----------------VGQVIRAICI 304

Length = 439

>gnl|CDD|227377 COG5044, MRS6, RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

 Score =  178 bits (454), Expect = 1e-51
 Identities = 114/404 (28%), Positives = 174/404 (43%), Gaps = 62/404 (15%)

Query: 17  PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSH 76
             E T +D+I++GTGL ES++SAA S  GK+VLH+D N +YGS  +SL++  L  + +  
Sbjct: 1   MDEETLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFD-- 58

Query: 77  STPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHY 136
                  P     D               R+ N+D+  P+ LF     + +++++G + Y
Sbjct: 59  --ECEKRPSKGGGD---------------RDLNIDLI-PKFLFANSELLKILIETGVTEY 100

Query: 137 LEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEE 196
           LEFK I  +F+     K+  VP + A IF    L L EK ++MRF K V  +       E
Sbjct: 101 LEFKQISGSFLYR-PGKIYKVPYNEAEIFTSPLLSLFEKRRVMRFLKWVSNY------AE 153

Query: 197 NNVRISEEDLDSPFAEFL-TKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLA 255
               + E        EFL  K  L    +  + + IA++  D ++       R+ + R+ 
Sbjct: 154 QKSTLQELYESKDTMEFLFEKFGLSGATEEFIGHGIALS-LDLDI-----PAREALERIL 207

Query: 256 LYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMP-VISLLTDQNSGSY 314
            Y  S G +  +    +YP YG GEL Q F R +AV G  Y+L         T       
Sbjct: 208 RYMRSFGDYGKS--PYLYPRYGLGELSQGFARSSAVYGGTYMLNQAIDEINETKDVETVD 265

Query: 315 KGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRS 374
           KG          + K++  P++       S                   ++ R ICI   
Sbjct: 266 KG-----SLTQKAGKIISSPTY---FREDSKSVGQFY------------RIIRAICILLV 305

Query: 375 SLKP---DLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLG 415
              P    L +  +IFPP SL  ++   I+V  LG    VCP G
Sbjct: 306 HPVPFTTGLDSLQIIFPPFSL--KRKNDIQVAGLGSGSEVCPEG 347

Length = 434

>gnl|CDD|185577 PTZ00363, PTZ00363, rab-GDP dissociation inhibitor; Provisional

 Score =  171 bits (435), Expect = 9e-49
 Identities = 111/399 (27%), Positives = 184/399 (46%), Gaps = 58/399 (14%)

Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+IV GTGL E ++S   S +GK VLH+D NP+YG   +SL++  L        TP   
Sbjct: 5   YDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETP--- 61

Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
            P+ L  +               R++N+D+  P+ +  +   V ++L +  + YLEFK I
Sbjct: 62  -PESLGRN---------------RDWNVDLI-PKFIMASGELVKILLHTDVTRYLEFKVI 104

Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
           D +++   + K+  VP +         +G  EKN+   F + V  +      +EN+    
Sbjct: 105 DGSYVYQKEGKIHKVPATDMEALSSPLMGFFEKNRCKNFLQYVSNY------DENDPETH 158

Query: 203 EE-DLDS-PFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
           +  +L +   A+   K  L       V +A+A+   D  +++  ++T   + R+ LY  S
Sbjct: 159 KGLNLKTMTMAQLYKKFGLEDNTIDFVGHAVALYTNDDYLNKPAIET---VMRIKLYMDS 215

Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
           + R+  +    IYP+YG G LPQAF R  A+ G  Y+L  PV  ++ D+N G   GV+  
Sbjct: 216 LSRYGKS--PFIYPLYGLGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDEN-GKVCGVKSE 272

Query: 321 SGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL 380
            G+      ++ DPS+  P  +                    GKV R ICI    + P+ 
Sbjct: 273 GGEVAKCKLVICDPSY-FPDKVKK-----------------VGKVIRCICILNHPI-PNT 313

Query: 381 SN---FLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGM 416
           +N     +I P + L   +   I ++ +  N  VCP G 
Sbjct: 314 NNANSCQIIIPQKQL--GRKNDIYIMLVSSNHGVCPKGK 350

Length = 443

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	416
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	100.0
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	100.0
KOG1439	440	consensus RAB proteins geranylgeranyltransferase c	100.0
KOG4405	547	consensus GDP dissociation inhibitor [Signal trans	100.0
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	100.0
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	99.97
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	99.96
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	99.96
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	99.95
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	99.95
PRK12416	463	protoporphyrinogen oxidase; Provisional	99.94
PLN02576	496	protoporphyrinogen oxidase	99.94
PRK07233	434	hypothetical protein; Provisional	99.94
PRK07208	479	hypothetical protein; Provisional	99.94
PRK11883	451	protoporphyrinogen oxidase; Reviewed	99.94
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	99.93
PLN02612	567	phytoene desaturase	99.93
PLN02268	435	probable polyamine oxidase	99.92
PLN02676	487	polyamine oxidase	99.91
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	99.91
PLN02487	569	zeta-carotene desaturase	99.91
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	99.91
PLN02529	738	lysine-specific histone demethylase 1	99.91
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	99.91
PLN02568	539	polyamine oxidase	99.88
PLN02328	808	lysine-specific histone demethylase 1 homolog	99.88
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	99.88
PLN03000	881	amine oxidase	99.87
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	99.82
PLN02976	1713	amine oxidase	99.82
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	99.81
PRK13977	576	myosin-cross-reactive antigen; Provisional	99.78
COG2907	447	Predicted NAD/FAD-binding protein [General functio	99.72
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	99.7
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	99.7
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	99.67
COG3349	485	Uncharacterized conserved protein [Function unknow	99.57
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	99.43
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	99.42
COG2081	408	Predicted flavoproteins [General function predicti	99.38
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.33
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.26
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	99.17
COG0579	429	Predicted dehydrogenase [General function predicti	99.17
PRK11728	393	hydroxyglutarate oxidase; Provisional	99.17
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	99.13
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	99.06
PRK08274	466	tricarballylate dehydrogenase; Validated	99.03
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	99.0
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	98.99
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.98
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	98.97
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	98.97
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	98.95
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	98.95
PTZ00383	497	malate:quinone oxidoreductase; Provisional	98.92
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	98.92
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	98.9
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	98.87
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	98.79
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	98.79
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	98.76
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	98.74
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	98.72
PRK10157	428	putative oxidoreductase FixC; Provisional	98.66
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.65
PRK10015	429	oxidoreductase; Provisional	98.62
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.61
PRK07121	492	hypothetical protein; Validated	98.61
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	98.59
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.58
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	98.58
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.55
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	98.55
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	98.54
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.54
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	98.54
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.52
PRK06370	463	mercuric reductase; Validated	98.52
PTZ00058	561	glutathione reductase; Provisional	98.52
PRK06116	450	glutathione reductase; Validated	98.52
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	98.51
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	98.51
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.5
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.5
PLN02463	447	lycopene beta cyclase	98.49
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.49
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.49
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	98.48
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.47
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	98.47
PRK08013	400	oxidoreductase; Provisional	98.47
PRK09126	392	hypothetical protein; Provisional	98.46
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.46
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	98.45
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.45
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	98.44
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.44
PRK07045	388	putative monooxygenase; Reviewed	98.43
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.43
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	98.43
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.43
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.43
PLN02661	357	Putative thiazole synthesis	98.42
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	98.41
PRK12831	464	putative oxidoreductase; Provisional	98.41
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.41
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	98.41
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	98.41
PRK07236	386	hypothetical protein; Provisional	98.4
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	98.39
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.39
PRK06184	502	hypothetical protein; Provisional	98.39
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	98.39
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.39
PRK08163	396	salicylate hydroxylase; Provisional	98.38
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.38
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	98.37
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	98.36
PRK14694	468	putative mercuric reductase; Provisional	98.36
PRK13748	561	putative mercuric reductase; Provisional	98.36
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	98.36
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	98.35
PRK12839	572	hypothetical protein; Provisional	98.35
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	98.35
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	98.35
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	98.34
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	98.34
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	98.34
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	98.34
PRK12842	574	putative succinate dehydrogenase; Reviewed	98.34
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	98.33
PLN02697	529	lycopene epsilon cyclase	98.33
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.32
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.32
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.32
PRK06185	407	hypothetical protein; Provisional	98.31
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.31
TIGR02053	463	MerA mercuric reductase. This model represents the	98.31
PRK06834	488	hypothetical protein; Provisional	98.31
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	98.3
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	98.3
PLN02985	514	squalene monooxygenase	98.3
PRK14727	479	putative mercuric reductase; Provisional	98.3
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	98.29
PRK06847	375	hypothetical protein; Provisional	98.29
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.29
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.29
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	98.29
COG3573	552	Predicted oxidoreductase [General function predict	98.27
PRK07190	487	hypothetical protein; Provisional	98.27
PTZ00052	499	thioredoxin reductase; Provisional	98.27
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	98.27
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	98.26
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.26
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	98.26
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	98.26
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.25
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	98.25
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.25
PRK06753	373	hypothetical protein; Provisional	98.24
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	98.24
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	98.22
PTZ00367	567	squalene epoxidase; Provisional	98.22
PLN02507	499	glutathione reductase	98.22
PRK11445	351	putative oxidoreductase; Provisional	98.22
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	98.22
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	98.22
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	98.22
PLN02464	627	glycerol-3-phosphate dehydrogenase	98.22
PRK08132	547	FAD-dependent oxidoreductase; Provisional	98.22
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.22
PRK06126	545	hypothetical protein; Provisional	98.22
PRK08244	493	hypothetical protein; Provisional	98.22
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	98.21
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.21
PRK07804	541	L-aspartate oxidase; Provisional	98.2
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	98.2
PRK07538	413	hypothetical protein; Provisional	98.2
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	98.19
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	98.19
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	98.19
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	98.18
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	98.18
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	98.18
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	98.18
PRK06175	433	L-aspartate oxidase; Provisional	98.17
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	98.17
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	98.16
PLN02546	558	glutathione reductase	98.16
PRK07588	391	hypothetical protein; Provisional	98.16
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	98.15
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	98.15
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	98.15
PRK05257	494	malate:quinone oxidoreductase; Validated	98.14
PRK07395	553	L-aspartate oxidase; Provisional	98.14
PRK10262	321	thioredoxin reductase; Provisional	98.14
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	98.14
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	98.14
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	98.14
PRK02106	560	choline dehydrogenase; Validated	98.13
PLN02852	491	ferredoxin-NADP+ reductase	98.13
PRK05868	372	hypothetical protein; Validated	98.13
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	98.12
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.12
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	98.11
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	98.1
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	98.09
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	98.09
PRK08294	634	phenol 2-monooxygenase; Provisional	98.09
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	98.08
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	98.08
PRK12814	652	putative NADPH-dependent glutamate synthase small	98.08
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	98.08
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	98.08
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	98.07
PRK06475	400	salicylate hydroxylase; Provisional	98.07
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.07
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	98.07
PTZ00153	659	lipoamide dehydrogenase; Provisional	98.06
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	98.06
PLN02815	594	L-aspartate oxidase	98.05
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	98.04
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	98.03
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	98.03
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	98.03
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	98.02
PRK08071	510	L-aspartate oxidase; Provisional	98.01
PRK13339	497	malate:quinone oxidoreductase; Reviewed	98.01
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	98.01
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	98.01
PRK06567	1028	putative bifunctional glutamate synthase subunit b	98.01
PRK06996	398	hypothetical protein; Provisional	98.0
PRK08401	466	L-aspartate oxidase; Provisional	97.99
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.98
TIGR00275	400	flavoprotein, HI0933 family. The model when search	97.97
PRK12770	352	putative glutamate synthase subunit beta; Provisio	97.97
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	97.97
PRK08275	554	putative oxidoreductase; Provisional	97.97
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	97.97
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	97.96
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	97.95
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	97.95
PRK09077	536	L-aspartate oxidase; Provisional	97.95
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	97.95
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	97.94
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	97.93
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	97.87
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.85
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.84
PTZ00188	506	adrenodoxin reductase; Provisional	97.83
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	97.83
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	97.78
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	97.78
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	97.76
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	97.76
PRK13984	604	putative oxidoreductase; Provisional	97.74
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.73
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	97.72
PRK07512	513	L-aspartate oxidase; Provisional	97.72
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	97.72
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	97.7
KOG2853	509	consensus Possible oxidoreductase [General functio	97.69
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.69
PRK07846	451	mycothione reductase; Reviewed	97.69
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	97.68
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	97.67
PLN02785	587	Protein HOTHEAD	97.59
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	97.58
COG4716	587	Myosin-crossreactive antigen [Function unknown]	97.52
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	97.46
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	97.42
PRK09897	534	hypothetical protein; Provisional	97.39
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	97.29
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	97.23
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	97.22
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	97.21
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	97.19
PRK09564	444	coenzyme A disulfide reductase; Reviewed	97.11
KOG2960	328	consensus Protein involved in thiamine biosynthesi	97.11
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	97.01
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	97.0
PRK13512	438	coenzyme A disulfide reductase; Provisional	96.98
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	96.96
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	96.96
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	96.95
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	96.83
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	96.58
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	96.57
KOG2852	380	consensus Possible oxidoreductase [General functio	96.47
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	96.44
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	96.38
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	96.33
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	96.31
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	96.26
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	96.2
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	96.05
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	95.93
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	95.9
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.9
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	95.9
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	95.88
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	95.84
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	95.83
PF07156	368	Prenylcys_lyase: Prenylcysteine lyase; InterPro: I	95.78
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	95.72
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	95.66
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	95.6
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.59
PRK14989	847	nitrite reductase subunit NirD; Provisional	95.47
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	95.45
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	95.37
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	95.33
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	95.24
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	95.18
TIGR02053	463	MerA mercuric reductase. This model represents the	95.14
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	95.14
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.1
PRK06370	463	mercuric reductase; Validated	95.01
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	94.98
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	94.97
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	94.92
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	94.92
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	94.9
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	94.9
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.88
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	94.87
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	94.86
PRK07846	451	mycothione reductase; Reviewed	94.85
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.84
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	94.81
PRK13512	438	coenzyme A disulfide reductase; Provisional	94.8
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	94.75
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	94.74
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.72
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.69
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	94.65
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	94.64
COG0569	225	TrkA K+ transport systems, NAD-binding component [	94.62
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	94.55
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	94.54
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	94.44
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.36
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.33
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	94.21
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	94.18
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	94.14
PRK04148	134	hypothetical protein; Provisional	94.14
PRK09564	444	coenzyme A disulfide reductase; Reviewed	94.01
PRK07845	466	flavoprotein disulfide reductase; Reviewed	93.98
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	93.93
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	93.9
PRK14989	847	nitrite reductase subunit NirD; Provisional	93.9
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	93.85
PTZ00153	659	lipoamide dehydrogenase; Provisional	93.85
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	93.81
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	93.8
PTZ00058	561	glutathione reductase; Provisional	93.77
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	93.76
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	93.71
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	93.7
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	93.69
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	93.68
PRK10262	321	thioredoxin reductase; Provisional	93.67
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	93.65
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.64
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	93.62
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	93.58
PRK12770	352	putative glutamate synthase subunit beta; Provisio	93.56
PLN02507	499	glutathione reductase	93.54
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	93.5
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	93.39
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	93.31
PRK06116	450	glutathione reductase; Validated	93.3
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	93.29
PRK05257	494	malate:quinone oxidoreductase; Validated	93.29
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	93.28
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	93.26
PRK12831	464	putative oxidoreductase; Provisional	93.26
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	93.17
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	93.1
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	93.1
PLN02353	473	probable UDP-glucose 6-dehydrogenase	93.01
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	92.97
PLN02546	558	glutathione reductase	92.96
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	92.89
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	92.89
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	92.87
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	92.79
PRK13748	561	putative mercuric reductase; Provisional	92.78
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	92.76
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	92.74
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	92.72
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	92.71
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	92.71
PRK14694	468	putative mercuric reductase; Provisional	92.68
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	92.59
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	92.58
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	92.5
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.5
PLN02695	370	GDP-D-mannose-3',5'-epimerase	92.48
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	92.44
PRK07121	492	hypothetical protein; Validated	92.41
PRK14727	479	putative mercuric reductase; Provisional	92.38
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	92.23
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.22
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	92.21
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	92.18
PRK06719	157	precorrin-2 dehydrogenase; Validated	92.17
PRK07417	279	arogenate dehydrogenase; Reviewed	92.15
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	92.13
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	92.07
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	92.03
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	91.98
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.96
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	91.94
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	91.88
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	91.86
PTZ00052	499	thioredoxin reductase; Provisional	91.84
PRK10157	428	putative oxidoreductase FixC; Provisional	91.82
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.8
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	91.79
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	91.74
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.7
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	91.7
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.64
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	91.64
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	91.62
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	91.55
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.52
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	91.36
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	91.34
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	91.29
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	91.27
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	91.21
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	91.17
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	91.16
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	91.08
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	91.06
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	90.95
PRK06847	375	hypothetical protein; Provisional	90.93
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	90.85
PRK11730	715	fadB multifunctional fatty acid oxidation complex	90.84
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	90.84
PRK13339	497	malate:quinone oxidoreductase; Reviewed	90.82
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	90.53
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	90.5
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	90.49
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	90.41
TIGR01816	565	sdhA_forward succinate dehydrogenase, flavoprotein	90.37
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	90.32
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	90.27
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	90.25
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	90.19
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	90.11
PRK06223	307	malate dehydrogenase; Reviewed	90.07
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.07
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	89.98
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	89.86
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	89.83
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.81
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	89.76
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.72
TIGR00275	400	flavoprotein, HI0933 family. The model when search	89.71
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	89.64
PRK10015	429	oxidoreductase; Provisional	89.61
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	89.59
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	89.58
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	89.57
PRK08306	296	dipicolinate synthase subunit A; Reviewed	89.45
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	89.44
PRK15116	268	sulfur acceptor protein CsdL; Provisional	89.42
PRK12842	574	putative succinate dehydrogenase; Reviewed	89.38
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	89.36
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	89.33
PLN02464	627	glycerol-3-phosphate dehydrogenase	89.32
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	89.21
PRK06834	488	hypothetical protein; Provisional	89.15
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	89.12
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	89.08
PTZ00082	321	L-lactate dehydrogenase; Provisional	89.06
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	89.01
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	88.98
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	88.9
PRK07045	388	putative monooxygenase; Reviewed	88.87
PRK06175	433	L-aspartate oxidase; Provisional	88.87
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	88.78
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	88.77
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	88.71
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	88.63
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	88.52
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	88.48
PRK12779	944	putative bifunctional glutamate synthase subunit b	88.41
PRK12839	572	hypothetical protein; Provisional	88.39
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	88.33
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	88.32
PRK07190	487	hypothetical protein; Provisional	88.28
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	88.21
PRK07831	262	short chain dehydrogenase; Provisional	88.15
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	88.06

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=100.00  E-value=1.8e-58  Score=447.79  Aligned_cols=347  Identities=36%  Similarity=0.659  Sum_probs=268.5

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCcccccccccccc
Q 014883           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (416)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (416)
                      |+++|||||+|+|+.+++.|++|+++|++|+|+|+|++|||.++|+++.++..|.......                 ..
T Consensus         1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~-----------------~~   63 (438)
T PF00996_consen    1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWT-----------------PP   63 (438)
T ss_dssp             --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCH-----------------HH
T ss_pred             CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccc-----------------cc
Confidence            4678999999999999999999999999999999999999999999999887786543110                 01


Q ss_pred             ccccCCCCceEeeCCCCeEEeeCchHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhhcCCCChHHHHHH
Q 014883           99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (416)
Q Consensus        99 ~~~~~~~~~~~~dl~Gp~~~~~~~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l  178 (416)
                      +.+ +..|+|++||. |+++++++.++++|.++++.+|++|+.++..|++. +|++.++|+++.++|+++.+++.+||++
T Consensus        64 ~~~-~~sR~ynIDL~-PKll~a~g~LV~lLi~S~V~rYLEFk~V~~~~v~~-~~~l~kVP~sr~dvf~s~~lsl~eKR~l  140 (438)
T PF00996_consen   64 ESL-GRSRDYNIDLI-PKLLYARGPLVKLLISSGVTRYLEFKAVDGSYVYK-NGKLHKVPCSREDVFKSKLLSLFEKRRL  140 (438)
T ss_dssp             HHH-HTGGGC-EESS---BEETTSHHHHHHHHCTGGGGSEEEEESEEEEEE-TTEEEE--SSHHHHHC-TTS-HHHHHHH
T ss_pred             ccc-ccccceeEecc-hHhhhccCHHHHHHHhCCcccceEEEEcceeEEEe-CCEEeeCCCCHHHhhcCCCccHHHHHHH
Confidence            112 45789999997 99999999999999999999999999999999886 8899999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHHhccCCchhhhhhhchhhHHHHHHHHH
Q 014883          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN  258 (416)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  258 (416)
                      |||+.++.++.+..+..+.    ..+....|+.+++++|++++.+++++.|++++..-+..   ..-++.+++.++..|+
T Consensus       141 mkFl~~v~~~~~~~~~~~~----~~~~~~~~~~e~~~~f~L~~~~~~~i~haiaL~~~~~~---~~~p~~~~l~ri~~yl  213 (438)
T PF00996_consen  141 MKFLKFVANYEEDDPSTHK----GLDPEKKTFQELLKKFGLSENLIDFIGHAIALSLDDSY---LTEPAREGLERIKLYL  213 (438)
T ss_dssp             HHHHHHHHHGCTTBGGGST----TG-TTTSBHHHHHHHTTS-HHHHHHHHHHTS-SSSSGG---GGSBSHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccCCcchhh----ccccccccHHHHHHhcCCCHHHHHHHHHhhhhccCccc---ccccHHHHHHHHHHHH
Confidence            9999999887543222111    11344689999999999999999999998887642211   1225678899999999


Q ss_pred             hhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCCC
Q 014883          259 SSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTV  338 (416)
Q Consensus       259 ~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~~~~  338 (416)
                      .|+++||.+  +|+||.||.++|+|+|||+++..||.++||++|++|..+ ++|++++|. .+|++++|++||++|+|. 
T Consensus       214 ~SlgryG~s--PfLyP~YG~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~-~~g~~~gV~-s~ge~v~~k~vI~dpsy~-  288 (438)
T PF00996_consen  214 SSLGRYGKS--PFLYPLYGLGELPQAFCRLSAVYGGTYMLNRPIDEIVVD-EDGKVIGVK-SEGEVVKAKKVIGDPSYL-  288 (438)
T ss_dssp             HHHCCCSSS--SEEEETT-TTHHHHHHHHHHHHTT-EEESS--EEEEEEE-TTTEEEEEE-ETTEEEEESEEEEEGGGB-
T ss_pred             HHHhccCCC--CEEEEccCCccHHHHHHHHhhhcCcEEEeCCccceeeee-cCCeEEEEe-cCCEEEEcCEEEECCccC-
Confidence            999999964  699999999999999999999999999999999999997 378888998 599999999999999886 


Q ss_pred             CCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCCCCCC--CCceEEEeCCCCCCCCCCCeEEEEEecCCCccCCCCC
Q 014883          339 PGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD--LSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGM  416 (416)
Q Consensus       339 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~~~~--~~~~~~~~pp~~~~~~~~~~v~~~~~~~~~~~~p~G~  416 (416)
                      |.-                 ....++|+|+|+|+++|+.+.  ..+++++|||.+.+.  .++|||+++|+++++||+|+
T Consensus       289 p~~-----------------v~~~~~V~RaI~Il~~pi~~t~~~~s~~IiiP~~~~~~--~~dIyv~~~ss~~~~CP~G~  349 (438)
T PF00996_consen  289 PEK-----------------VKKTGQVSRAICILDHPIPNTEDASSVQIIIPQSQVGR--KSDIYVLQLSSSTGVCPKGQ  349 (438)
T ss_dssp             GCG-----------------EEEEEEEEEEEEEESS-STTSTT-SSEEEEE-GGGCTS--SS-EEEEEEEGGGTSS-TT-
T ss_pred             ccc-----------------ccccceEEEEEEEEcCCCCCCCCCceEEEecCCcccCC--CCCeEEEEECCCccccCCCc
Confidence            321                 113578999999999999864  356778899876553  46799999999999999996

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=100.00  E-value=2.2e-55  Score=432.32  Aligned_cols=348  Identities=29%  Similarity=0.528  Sum_probs=288.5

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCcccccccccccc
Q 014883           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (416)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (416)
                      |+++|||||||||++||++|+.|+++|++|+|||+|++|||+++|+++.++..|+... .+.                 +
T Consensus         1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~-~~~-----------------~   62 (443)
T PTZ00363          1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPG-ETP-----------------P   62 (443)
T ss_pred             CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhccc-CCC-----------------c
Confidence            4678999999999999999999999999999999999999999999998764343211 110                 1


Q ss_pred             ccccCCCCceEeeCCCCeEEeeCchHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhhcCCCChHHHHHH
Q 014883           99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (416)
Q Consensus        99 ~~~~~~~~~~~~dl~Gp~~~~~~~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l  178 (416)
                      +.+ +..+.|++|+. |++++.++.++++|.++++.+|++|+.++..|++..+|+++++|.++.++|+++.+++.+|+++
T Consensus        63 ~~~-~~~r~~~iDL~-Pk~l~~~G~lv~lL~~s~v~ryleF~~l~g~~v~~~~g~~~~vP~s~~~~~~s~ll~l~eKr~l  140 (443)
T PTZ00363         63 ESL-GRNRDWNVDLI-PKFIMASGELVKILLHTDVTRYLEFKVIDGSYVYQKEGKIHKVPATDMEALSSPLMGFFEKNRC  140 (443)
T ss_pred             hhc-ccccccccccC-CeeeecCChHHHHHhhcCccceeeeEEeceEEEEecCCeEEECCCCHHHHhhCCCcchhhHHHH
Confidence            112 35688999996 9999999999999999999999999999999987348899999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHHhccCCchhhhhhhchhhHHHHHHHHH
Q 014883          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN  258 (416)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  258 (416)
                      |+|++++.++....+....    ...+...|+.+|++++++++.+++++.+++++.... +.  .+.++..++.++..|+
T Consensus       141 ~kfl~~v~~~~~~~~~~~~----~~~~d~~T~~d~L~~~~ls~~~~d~i~~~ial~~~~-~~--~~~pa~~tl~ri~~y~  213 (443)
T PTZ00363        141 KNFLQYVSNYDENDPETHK----GLNLKTMTMAQLYKKFGLEDNTIDFVGHAVALYTND-DY--LNKPAIETVMRIKLYM  213 (443)
T ss_pred             HHHHHHHHhhccCChhhhc----ccCcccCCHHHHHHHhCCCHHHHHHHHHHHHhhccc-cc--ccCCHHHHHHHHHHHH
Confidence            9999998876543221111    012346899999999999999999988877664211 10  0134667788999999


Q ss_pred             hhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCCC
Q 014883          259 SSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTV  338 (416)
Q Consensus       259 ~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~~~~  338 (416)
                      .|+++||.  +++.||+||+++|+++|+|.++++|++|+|+++|++|..+ +++++++|++++|++++|++||++|++. 
T Consensus       214 ~S~~~~g~--~p~~yp~gG~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~-~~g~~~~V~~~~Ge~i~a~~VV~~~s~~-  289 (443)
T PTZ00363        214 DSLSRYGK--SPFIYPLYGLGGLPQAFSRLCAIYGGTYMLNTPVDEVVFD-ENGKVCGVKSEGGEVAKCKLVICDPSYF-  289 (443)
T ss_pred             HHHhhccC--CcceeeCCCHHHHHHHHHHHHHHcCcEEEcCCeEEEEEEc-CCCeEEEEEECCCcEEECCEEEECcccc-
Confidence            99999985  3578999999999999999999999999999999999987 3578889999999999999999999886 


Q ss_pred             CCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCCCCC--CCCceEEEeCCCCCCCCCCCeEEEEEecCCCccCCCCC
Q 014883          339 PGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP--DLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGM  416 (416)
Q Consensus       339 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~~~--~~~~~~~~~pp~~~~~~~~~~v~~~~~~~~~~~~p~G~  416 (416)
                      |..                 ....++|+|+|||+++|+.+  +.++++++|||.+.+.  .++|||+++|+++++||+|+
T Consensus       290 p~~-----------------~~~~~~v~R~i~i~~~pi~~~~~~~~~~i~~P~~~~~~--~~~i~v~~~s~~~~~cp~g~  350 (443)
T PTZ00363        290 PDK-----------------VKKVGKVIRCICILNHPIPNTNNANSCQIIIPQKQLGR--KNDIYIMLVSSNHGVCPKGK  350 (443)
T ss_pred             ccc-----------------cccccEEEEEEEEEcccccccCcCccEEEEECCcccCC--CCCEEEEEecCCCCcCCCCc
Confidence            331                 11478999999999999964  3467889999988765  47899999999999999996

>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.3e-50  Score=370.44  Aligned_cols=346  Identities=32%  Similarity=0.554  Sum_probs=288.9

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCcccccccccccc
Q 014883           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (416)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (416)
                      |+..|||||+|+|+..++.++.|+.+|++|+|+|+|++|||-.+|.++..+..|+......                 .+
T Consensus         1 mdeeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sasltl~ql~~~f~~~~~~-----------------~~   63 (440)
T KOG1439|consen    1 MDEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLTLEQLYKKFKKVSEK-----------------PP   63 (440)
T ss_pred             CCCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccccceeHHHHHHHhcccccc-----------------Cc
Confidence            3456999999999999999999999999999999999999999999988877776633110                 00


Q ss_pred             ccccCCCCceEeeCCCCeEEeeCchHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhhcCCCChHHHHHH
Q 014883           99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (416)
Q Consensus        99 ~~~~~~~~~~~~dl~Gp~~~~~~~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l  178 (416)
                      +.. ...++|++|+. |++++..+.++.+|.+.++.+|++|+.+++.|++. +|+++++|.++.+++.++.+++.+|+++
T Consensus        64 ~~~-~~~rd~nvDLi-PK~lmAn~~Lvk~Li~T~V~~YL~fk~i~gsfv~~-~~k~~KVP~t~~Ea~~s~lmgl~eKrr~  140 (440)
T KOG1439|consen   64 EKL-GRDRDWNVDLI-PKFLMANGELVKILIHTGVTRYLEFKSISGSFVYK-KGKIYKVPATEAEALTSPLMGLFEKRRV  140 (440)
T ss_pred             ccc-ccccccchhhc-hHhhhccchHHHHHHHhchhhheEEEeecceEEEE-CCeEEECCCCHHHHhcCCccchhHHHHH
Confidence            111 35688999998 99999999999999999999999999999999987 7799999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCccccccccccccccC-CcHHHHHHhcCCChhHHHHHHHHHHhccCCchhhhhhhchhhHHHHHHHH
Q 014883          179 MRFFKLVQGHLSLDESEENNVRISEEDLD-SPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALY  257 (416)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~  257 (416)
                      |||+.++.++.+..+...     ...+.. .++.+++.++++....+++..+++++...+. .  -+.++..++.++..|
T Consensus       141 ~kFl~~V~n~~e~~~~~~-----~~~~~~k~tm~~~~~~~~l~~~~~~f~gh~~al~~dd~-~--ld~p~~~~~~ri~~Y  212 (440)
T KOG1439|consen  141 MKFLKFVLNYDEEDPKTW-----QGYDLSKDTMREFLGKFGLLEGTIDFIGHAIALLCDDS-Y--LDQPAKETLERILLY  212 (440)
T ss_pred             HHHHHHHhhhhhhccccc-----cccccccchHHHHHHHhcccccceeeeeeeeEEEecch-h--ccCccHHHHHHHHHH
Confidence            999999988765433211     112232 4999999999999999998877665532211 0  124677889999999


Q ss_pred             HhhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCC
Q 014883          258 NSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFT  337 (416)
Q Consensus       258 ~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~~~  337 (416)
                      ++|+++||..  +++||.||.++|+|+|||.++..||+++||.++.+|..++ +|++.+|+ ..++..+++.+|++|+|.
T Consensus       213 ~~S~~~yg~~--~ylyP~yGlgEL~QgFaRlsAvyGgTYMLn~pi~ei~~~~-~gk~igvk-~~~~v~~~k~vi~dpSY~  288 (440)
T KOG1439|consen  213 VRSFARYGKS--PYLYPLYGLGELPQGFARLSAVYGGTYMLNKPIDEINETK-NGKVIGVK-SGGEVAKCKKVICDPSYF  288 (440)
T ss_pred             HHHHhhcCCC--cceecccCcchhhHHHHHHhhccCceeecCCceeeeeccC-CccEEEEe-cCCceeecceEEecCccc
Confidence            9999999964  4899999999999999999999999999999999999853 78888887 567788999999999986


Q ss_pred             CCCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCCC--CCCCCceEEEeCCCCCCCCCCCeEEEEEecCCCccCCCC
Q 014883          338 VPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL--KPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLG  415 (416)
Q Consensus       338 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~--~~~~~~~~~~~pp~~~~~~~~~~v~~~~~~~~~~~~p~G  415 (416)
                       +.                 +....++++|++||.+.|.  ..+.++++++|||.+.+.  .++|+|..+|+++++||+|
T Consensus       289 -~~-----------------~~k~vg~viR~iCIl~hpi~~t~~~~S~qiiipq~q~~r--ksdi~v~~~ss~~~vcpeG  348 (440)
T KOG1439|consen  289 -PQ-----------------KVKKVGQVIRAICILSHPIPNTNDAESAQIIIPQFQVGR--KSDIYVFGLSSAHNVCPEG  348 (440)
T ss_pred             -hH-----------------HHHhhhheeeeeEEecCCcCcCCccceeeEEechhhhCC--cccEEEEEeccCCCcCCCc
Confidence             22                 1123578999999999775  567788999999887765  6899999999999999999


Q ss_pred             C
Q 014883          416 M  416 (416)
Q Consensus       416 ~  416 (416)
                      |
T Consensus       349 ~  349 (440)
T KOG1439|consen  349 K  349 (440)
T ss_pred             e
Confidence            7

>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.9e-49  Score=364.97  Aligned_cols=365  Identities=36%  Similarity=0.611  Sum_probs=286.6

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChh--------hhHhhhh---cCCCC--------
Q 014883           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIA--------DLTHFLN---SHSTP--------   79 (416)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~--------~~~~~~~---~~~~~--------   79 (416)
                      .++.|||||||+|+...+.|++.+++|.+|++||+|.+|||.|+||.+.        .+....+   +...+        
T Consensus         5 lP~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms~ihe~~e~~l~~~d~ls~eVe~~~al~~n~~   84 (547)
T KOG4405|consen    5 LPEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMSMIHEVEEAALTKKDHLSNEVEPPSALQKNNA   84 (547)
T ss_pred             CchhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeechhhhhhHHHHhhhhccccccCCCccccccCC
Confidence            4678999999999999999999999999999999999999999999986        3323321   11111        


Q ss_pred             --CCCCCCCccccccccc---------------cccccccCCCCceEeeCCCCeEEeeCchHHHHHHhcCcccccccccc
Q 014883           80 --SSVCPDPLYSDVEISN---------------YASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI  142 (416)
Q Consensus        80 --~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~dl~Gp~~~~~~~~~~~~l~~~g~~~~~~f~~~  142 (416)
                        ++...+.+|.+.+..+               .....+....|+|++||. |+++++.+.++++|.++++.+|.+|+.+
T Consensus        85 ~~t~~sn~e~~~~vEken~~~~s~~d~~E~~p~~nr~~i~~~~RRFniDLv-pkilys~g~lI~lLikS~vsrYaEFK~V  163 (547)
T KOG4405|consen   85 PPTPPSNNEIFLEVEKENCIPSSLKDSVEDSPSKNRSQIEKESRRFNIDLV-PKILYSAGELIQLLIKSNVSRYAEFKNV  163 (547)
T ss_pred             CCCCCCCchhhhheeeeccccccccchhhhcccccHHHHHHhccccchhhh-hHHHhcccHHHHHHHHhcchhhhhhhcc
Confidence              1111123333333221               011123346799999998 9999999999999999999999999999


Q ss_pred             cceeeeccCCceeecCCChhhhhhcCCCChHHHHHHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChh
Q 014883          143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHK  222 (416)
Q Consensus       143 ~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~  222 (416)
                      +..+.+. .|++..+|+++.++|.++.++..+|+.||||++++.++..+.     ..+...+..+.||.+||++++++++
T Consensus       164 ~r~l~~~-eg~l~~VPcSRadvFnsk~LTivEKr~LMKFltfc~~y~tEk-----~~~~~~~~~e~~F~EyL~~~rltp~  237 (547)
T KOG4405|consen  164 DRILAFR-EGELEQVPCSRADVFNSKSLTIVEKRMLMKFLTFCQEYLTEK-----DPDEYVEFRERPFSEYLKTMRLTPK  237 (547)
T ss_pred             chhhccc-CCeeeecCchHHhhhcccchhHHHHHHHHHHHHHHHHhhhcc-----CcHHHHHhhcCcHHHHHHhcCCChh
Confidence            9988776 789999999999999999999999999999999999885221     1112335567899999999999999


Q ss_pred             HHHHHHHHHHhccCCchhhhhhhchhhHHHHHHHHHhhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCce
Q 014883          223 IKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPV  302 (416)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V  302 (416)
                      ++.++.+++++....      +.++..++.+...|+.|+|+||+.  +|++|.||.|+|+|+|||+|++.|+.+.|+++|
T Consensus       238 lqs~vl~aIaM~~~~------~~tt~eGm~at~~fl~slGrfgnt--pfLfPlYGqGELpQcFCRlcAVfGgIYcLr~~V  309 (547)
T KOG4405|consen  238 LQSIVLHAIAMLSES------QLTTIEGMDATKNFLTSLGRFGNT--PFLFPLYGQGELPQCFCRLCAVFGGIYCLRRPV  309 (547)
T ss_pred             hHHHHHHHHHhcCcc------cccHHHHHHHHHHHHHHhhccCCC--cceeeccCCCcchHHHHHHHHHhcceEEeccch
Confidence            999999999986543      246888999999999999999974  599999999999999999999999999999999


Q ss_pred             eEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCCCCCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCCCCCCC-C
Q 014883          303 ISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL-S  381 (416)
Q Consensus       303 ~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~~~~~-~  381 (416)
                      +.|..|++.+++..+....|+.+.|+++|+.|.++ |... .             .+....+|+|+++||+++..+.+ +
T Consensus       310 q~ivldk~s~~~~~~l~s~g~ri~~k~~v~s~~y~-pe~~-~-------------~~~~~K~Israv~itd~sil~~e~~  374 (547)
T KOG4405|consen  310 QAIVLDKESLDCKAILDSFGQRINAKNFVVSPSYA-PEVV-C-------------SRVQLKQISRAVLITDPSILKTELD  374 (547)
T ss_pred             hheeecccccchhhhHhhhcchhcceeeeecCccc-cccc-c-------------cccchhhcceeEEecCccccchhHH
Confidence            99999854443322323579999999999999987 4321 1             12234479999999999986543 3


Q ss_pred             ce--EEEeCCCCCCCCCCCeEEEEEecCCCccCCCCC
Q 014883          382 NF--LVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGM  416 (416)
Q Consensus       382 ~~--~~~~pp~~~~~~~~~~v~~~~~~~~~~~~p~G~  416 (416)
                      +.  ++.+++...+   .-.|++++++++++.||+|.
T Consensus       375 q~~~ll~~~~~epg---~~avr~iel~~~t~tc~kg~  408 (547)
T KOG4405|consen  375 QQLSLLSLLAVEPG---AMAVRLIELCSSTMTCPKGT  408 (547)
T ss_pred             hhhhhhhccccCcc---hhhHHHHHhhcccccCccce
Confidence            32  3445543222   46799999999999999984

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.4e-47  Score=349.78  Aligned_cols=341  Identities=31%  Similarity=0.537  Sum_probs=283.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCccccccccccccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (416)
                      .+.|||||+|+|+..++.+++|+.+|++|+|+|+|+.||+-.+|.++..+..|++......+                  
T Consensus         4 ~~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~asltl~ql~~~~~~~~~~p~------------------   65 (434)
T COG5044           4 ETLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFDECEKRPS------------------   65 (434)
T ss_pred             cccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccceeHHHHHHHhhhhhcccc------------------
Confidence            34799999999999999999999999999999999999999999999888888776522100                  


Q ss_pred             cccCCCCceEeeCCCCeEEeeCchHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhhcCCCChHHHHHHH
Q 014883          100 LLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLM  179 (416)
Q Consensus       100 ~~~~~~~~~~~dl~Gp~~~~~~~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l~  179 (416)
                       -....++|++|+. |++++..++++.+|.+.++.+|++|+++..+|++. +|+++++|.++.++|.++.+++.+|+++|
T Consensus        66 -k~~~drd~~iDL~-PK~l~A~s~l~~iLi~t~v~~YLefk~i~~~~~~~-~~k~~kVP~ne~ei~~s~~lsL~eKr~vm  142 (434)
T COG5044          66 -KGGGDRDLNIDLI-PKFLFANSELLKILIETGVTEYLEFKQISGSFLYR-PGKIYKVPYNEAEIFTSPLLSLFEKRRVM  142 (434)
T ss_pred             -ccccccccchhhc-hhhhcccchHHHHHHHhChHhheeeeeccccEEec-CCcEEECCccHHhhhcCCCcchhhHHHHH
Confidence             0124678999998 99999999999999999999999999999999887 66999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCccccccccccccccCCcHHHHHH-hcCCChhHHHHHHHHHHhccCCchhhhhhhchhhHHHHHHHHH
Q 014883          180 RFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLT-KMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN  258 (416)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  258 (416)
                      ||++++..+.+..      ....+.+.++++.+++. +|+++....+++.+++++.. +.     +++++.++.++..|+
T Consensus       143 rFl~~V~n~~~~~------~~~~~~~e~k~~~~~~~ekf~L~~~~~e~i~~~i~l~l-dl-----~~p~re~~erIl~Y~  210 (434)
T COG5044         143 RFLKWVSNYAEQK------STLQELYESKDTMEFLFEKFGLSGATEEFIGHGIALSL-DL-----DIPAREALERILRYM  210 (434)
T ss_pred             HHHHHHHhHHhhh------hhchhhhhcccHHHHHHHHHccCcchhhhhhhhhhhhc-cc-----cCCchHHHHHHHHHH
Confidence            9999988775421      11122345567777765 79999999999999877742 22     357888999999999


Q ss_pred             hhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCCC
Q 014883          259 SSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTV  338 (416)
Q Consensus       259 ~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~~~~  338 (416)
                      +|++.||.  .+++||++|.++|+|.|||.++..||+++||+++.+|.-.   ..+.+|. .++.+..|.+||.+|++. 
T Consensus       211 ~Sf~~yg~--~pyLyp~YGl~El~QGFaRssav~GgtymLn~~i~ein~t---k~v~~v~-~~~~~~ka~KiI~~~~~~-  283 (434)
T COG5044         211 RSFGDYGK--SPYLYPRYGLGELSQGFARSSAVYGGTYMLNQAIDEINET---KDVETVD-KGSLTQKAGKIISSPTYF-  283 (434)
T ss_pred             HhhcccCC--CcceeeccCchhhhHHHHHhhhccCceeecCcchhhhccc---cceeeee-cCcceeecCcccCCcccc-
Confidence            99999995  4599999999999999999999999999999999999754   3334665 567789999999998876 


Q ss_pred             CCCCCCchhhhhhhhhhccccCCcceEEEEEEEec---CCCCCCCCceEEEeCCCCCCCCCCCeEEEEEecCCCccCCCC
Q 014883          339 PGSLASSHQQLQESFQAFSLSDNKGKVARGICITR---SSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLG  415 (416)
Q Consensus       339 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~---~p~~~~~~~~~~~~pp~~~~~~~~~~v~~~~~~~~~~~~p~G  415 (416)
                      +.-..           .+.|   ...++|++||..   .|+....++++++|||.++..  .+.|+|..+|+++++||+|
T Consensus       284 ~~~~~-----------~~~q---~yriiRa~Ci~~~h~~~~~~~~ds~~iif~~~~lk~--~~~i~v~~lgs~~~~CPEG  347 (434)
T COG5044         284 REDSK-----------SVGQ---FYRIIRAICILLVHPVPFTTGLDSLQIIFPPFSLKR--KNDIQVAGLGSGSEVCPEG  347 (434)
T ss_pred             ccccc-----------ccch---hhhhhHhhhhhhcCccccccccccceeeechhhhcc--cCceEEEEecCCCCCCCCc
Confidence            22000           0111   146899999877   456778899999999998876  4679999999999999999


Q ss_pred             C
Q 014883          416 M  416 (416)
Q Consensus       416 ~  416 (416)
                      |
T Consensus       348 y  348 (434)
T COG5044         348 Y  348 (434)
T ss_pred             e
Confidence            7

>TIGR02734 crtI_fam phytoene desaturase

Probab=99.97  E-value=8.5e-29  Score=251.79  Aligned_cols=334  Identities=15%  Similarity=0.143  Sum_probs=207.5

Q ss_pred             EEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCccccccccccccccccCC
Q 014883           25 LIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQH  104 (416)
Q Consensus        25 ViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (416)
                      |||||||++||+||++|+++|++|+||||++++||+++|++.+                                     
T Consensus         1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~~~-------------------------------------   43 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDD-------------------------------------   43 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEecC-------------------------------------
Confidence            6999999999999999999999999999999999999998754                                     


Q ss_pred             CCceEeeCCCCeEEeeCchHHHHHHhcCc--cccccccccccee-eeccCCceeecCCChhhhhhc-CCCChHHHHHHHH
Q 014883          105 PRNFNLDVSGPRVLFCADHAVDLMLKSGA--SHYLEFKSIDATF-MLDADAKLCSVPDSRAAIFKD-KSLGLMEKNQLMR  180 (416)
Q Consensus       105 ~~~~~~dl~Gp~~~~~~~~~~~~l~~~g~--~~~~~f~~~~~~~-~~~~~g~~~~~p~~~~~~~~~-~~l~~~~k~~l~~  180 (416)
                        +|.+|. |++++..++.+.+++.++|.  .+++++...++.+ ++..||+.+.++.+....... ..+.+.+...+.+
T Consensus        44 --G~~fD~-G~~~~~~~~~~~~l~~~lg~~l~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~  120 (502)
T TIGR02734        44 --GFRFDT-GPTVITMPEALEELFALAGRDLADYVELVPLDPFYRLCWEDGSQLDVDNDQEELEAQIARFNPGDVAGYRR  120 (502)
T ss_pred             --CeEEec-CCeEEccccHHHHHHHHcCCChhheEEEEECCCceEEECCCCCEEEecCCHHHHHHHHHHhCcccHHHHHH
Confidence              356888 58988766667777787774  5677887777655 333467778887765322210 1233555555666


Q ss_pred             HHHHHHhhcC-------CCcccc--cc-----ccccccccCCcHHHHHHhcCCChhHHHHHHHHHHhccCCchhhhhhhc
Q 014883          181 FFKLVQGHLS-------LDESEE--NN-----VRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLK  246 (416)
Q Consensus       181 ~~~~~~~~~~-------~~~~~~--~~-----~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  246 (416)
                      |++.++....       ..+...  ..     ......+...|+.+|++++..++.++.++.+.....  ..++  .+.+
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~--g~~p--~~~~  196 (502)
T TIGR02734       121 FLDYAERVYREGYRKLGYVPFLSPRDLLRADLPQLLALLAWRSLYSKVARFFSDERLRQAFSFHALFL--GGNP--FRTP  196 (502)
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCCHHHHHhHhhHhhhhccCcCCHHHHHHhhcCCHHHHHHhcccceee--ccCc--ccch
Confidence            6554433211       001000  00     011123456899999999888888888775321111  1222  1222


Q ss_pred             hhhHHHHHHHHHhhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEE
Q 014883          247 TRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDIL  326 (416)
Q Consensus       247 ~~~~~~~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~  326 (416)
                      +   +..+..+..    +.   +..++|.||++.++++|.+.+++.|++|+++++|++|.++  ++++++|++.+|+++.
T Consensus       197 ~---~~~l~~~~~----~~---~g~~~~~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~--~~~~~~V~~~~g~~~~  264 (502)
T TIGR02734       197 S---IYALISALE----RE---WGVWFPRGGTGALVAAMAKLAEDLGGELRLNAEVIRIETE--GGRATAVHLADGERLD  264 (502)
T ss_pred             H---HHHHHHHHH----hh---ceEEEcCCCHHHHHHHHHHHHHHCCCEEEECCeEEEEEee--CCEEEEEEECCCCEEE
Confidence            2   111222211    11   1256899999999999999999999999999999999987  6777899988999999


Q ss_pred             cCEEEECCC--CCCCCCCCCchhhhhhhh-hhccccCCcceEEEEEEEec---CCCCCCCCceEEEeCCCCC--------
Q 014883          327 SHKLVLDPS--FTVPGSLASSHQQLQESF-QAFSLSDNKGKVARGICITR---SSLKPDLSNFLVIFPPRSL--------  392 (416)
Q Consensus       327 Ad~VI~~p~--~~~~~l~~~~~~~l~~~~-~~~~~~~~~~~~~k~i~i~~---~p~~~~~~~~~~~~pp~~~--------  392 (416)
                      ||+||++.+  .++..|...  ...+... +.+.......+.....+.++   +++...+...++..+-...        
T Consensus       265 ad~VI~a~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~s~s~~~~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (502)
T TIGR02734       265 ADAVVSNADLHHTYRRLLPN--HPRRRYPAARLSRKRPSPSLFVLYFGLLGVDGHWPQLAHHTLCFGPRYKELFDEIFRK  342 (502)
T ss_pred             CCEEEECCcHHHHHHHhcCc--cccccccccccccCCcCCeeeEEEEeeccccCcCCCcCceeEecCcCHHHHHHHHhcC
Confidence            999996533  343333211  1111111 12222222334555555566   4554333333333231110        


Q ss_pred             CC-CCCCeEEEEEecC-CCccCCCCC
Q 014883          393 FP-EQVTSIRVLQLGG-NLAVCPLGM  416 (416)
Q Consensus       393 ~~-~~~~~v~~~~~~~-~~~~~p~G~  416 (416)
                      +. ...+.++|...+. |.+.+|+|+
T Consensus       343 g~~~~~p~~~v~~~s~~dp~~aP~G~  368 (502)
T TIGR02734       343 GRLAEDPSLYLHRPTVTDPSLAPPGC  368 (502)
T ss_pred             CCCCCCCcEEEEcCCCCCCCCCCCCC
Confidence            00 1246788877654 578899985

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.96  E-value=1.9e-28  Score=246.63  Aligned_cols=260  Identities=20%  Similarity=0.248  Sum_probs=168.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCccccccccccccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (416)
                      |+.+||||||||++||+||++||++|++|+||||++++||+++|++++                                
T Consensus         1 ~~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~--------------------------------   48 (487)
T COG1233           1 MPMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELD--------------------------------   48 (487)
T ss_pred             CCCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEecc--------------------------------
Confidence            356899999999999999999999999999999999999999998764                                


Q ss_pred             cccCCCCceEeeCCCCeEEeeCchHHHHHHhcC-cccc-ccccccccee-eeccCCceeecCCChhhhhh-cCCCChHHH
Q 014883          100 LLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSG-ASHY-LEFKSIDATF-MLDADAKLCSVPDSRAAIFK-DKSLGLMEK  175 (416)
Q Consensus       100 ~~~~~~~~~~~dl~Gp~~~~~~~~~~~~l~~~g-~~~~-~~f~~~~~~~-~~~~~g~~~~~p~~~~~~~~-~~~l~~~~k  175 (416)
                             +|.+|. ||+++...... .++.+++ +..+ +++...++.+ .+..+|....+..+...... ....++.+.
T Consensus        49 -------Gf~fd~-G~~~~~~~~~~-~~~~~l~~l~~~~l~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~~p~~~  119 (487)
T COG1233          49 -------GFRFDT-GPSWYLMPDPG-PLFRELGNLDADGLDLLPPDPAYRVFLPDGDAIDVYTDLEATAELLESLEPGDG  119 (487)
T ss_pred             -------ceEecc-CcceeecCchH-HHHHHhccCcccceeeeccCCceeeecCCCCEEEecCCHHHHHHHHHhhCcccH
Confidence                   366888 48887666654 5666666 5555 6777766666 33445777877766543222 122334444


Q ss_pred             HHHHHHHHHHHhhc----C----CCccccc-ccccc------ccccCCcHHHHHHhcCCChhHHHHHHHHHHhccCCchh
Q 014883          176 NQLMRFFKLVQGHL----S----LDESEEN-NVRIS------EEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEV  240 (416)
Q Consensus       176 ~~l~~~~~~~~~~~----~----~~~~~~~-~~~~~------~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (416)
                      ..+.+++..+.+..    .    ...+... .....      ......+..++++....++.++..+.+..... . ..|
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~f~~~~~r~~~~~~~~~~-~-~~p  197 (487)
T COG1233         120 EALARYLRLLARLYELLAALLLAPPRSELLLVPDTPERLLRLLGFSLTSALDFFRGRFGSELLRALLAYSAVYG-G-APP  197 (487)
T ss_pred             HHHHHHHHHHHHhhHHHHhhcCCCchhhhhhccccHHHHHHHHHHhhhhHHHHHHHHhcCHHHHHHHHHHHHhc-C-CCC
Confidence            44444444322110    0    0000000 00000      01123566677765555667777666542222 1 222


Q ss_pred             hhhhhchhhHHHHHHHHHhhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeC
Q 014883          241 SEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA  320 (416)
Q Consensus       241 ~~~~~s~~~~~~~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~  320 (416)
                      .  +.+   ++..+..+   . .+.  .| +.||+||++.|+++|++.++++|++|+++++|++|.++  +|+.++|++.
T Consensus       198 ~--~~~---a~~~~~~~---~-~~~--~G-~~~p~GG~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~--~g~g~~~~~~  263 (487)
T COG1233         198 S--TPP---ALYLLLSH---L-GLS--GG-VFYPRGGMGALVDALAELAREHGGEIRTGAEVSQILVE--GGKGVGVRTS  263 (487)
T ss_pred             C--chh---HHHHHHHH---h-ccc--CC-eeeeeCCHHHHHHHHHHHHHHcCCEEECCCceEEEEEe--CCcceEEecc
Confidence            0  111   22222221   1 122  12 67999999999999999999999999999999999998  7776788877


Q ss_pred             CCcEEEcCEEEECCCC
Q 014883          321 SGQDILSHKLVLDPSF  336 (416)
Q Consensus       321 ~G~~i~Ad~VI~~p~~  336 (416)
                      +|+.++||.||++...
T Consensus       264 ~g~~~~ad~vv~~~~~  279 (487)
T COG1233         264 DGENIEADAVVSNADP  279 (487)
T ss_pred             ccceeccceeEecCch
Confidence            7778999999966443

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=99.96  E-value=7.8e-27  Score=236.73  Aligned_cols=331  Identities=12%  Similarity=0.058  Sum_probs=188.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCcccccccccccccccc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS  102 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (416)
                      .||||||||++||+||++|+++|++|+|||+++++||++++++.+                                   
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~-----------------------------------   46 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRR-----------------------------------   46 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceeccC-----------------------------------
Confidence            599999999999999999999999999999999999999998764                                   


Q ss_pred             CCCCceEeeCCCCeEEee---CchHHHHHHhcCccccccccccccee-eeccCC-ceeecCCChhhhhhc-CCCChHHHH
Q 014883          103 QHPRNFNLDVSGPRVLFC---ADHAVDLMLKSGASHYLEFKSIDATF-MLDADA-KLCSVPDSRAAIFKD-KSLGLMEKN  176 (416)
Q Consensus       103 ~~~~~~~~dl~Gp~~~~~---~~~~~~~l~~~g~~~~~~f~~~~~~~-~~~~~g-~~~~~p~~~~~~~~~-~~l~~~~k~  176 (416)
                          +|.+|. |++++..   .+.+-+++.++|+... .+...++.+ ++..|| ..+.++.+....... ....+.+.+
T Consensus        47 ----G~~fD~-G~~~~~~~~~~~~~~~~~~~lg~~~~-~~~~~d~~~~~~~~dg~~~~~~~~d~~~~~~~l~~~~p~~~~  120 (492)
T TIGR02733        47 ----GFTFDV-GATQVAGLEPGGIHARIFRELGIPLP-EAKILDPACAVDLPDGSEPIPLWHDPDRWQKERERQFPGSER  120 (492)
T ss_pred             ----CEEEee-cceEEEecCcCCHHHHHHHHcCCCCc-ccccCCCCcEEEECCCceEeeeecCHHHHHHHHHHHCCChHH
Confidence                356888 4888743   3345566778887532 233344433 233466 345555554322110 001122221


Q ss_pred             HHHH---HHHHHHhhcCCC-------ccc--------cccccccccccCCcHHHHHHhc--CCChhHHHHHHHHHHhccC
Q 014883          177 QLMR---FFKLVQGHLSLD-------ESE--------ENNVRISEEDLDSPFAEFLTKM--KLPHKIKSIVLYAIAMADY  236 (416)
Q Consensus       177 ~l~~---~~~~~~~~~~~~-------~~~--------~~~~~~~~~~~~~t~~~~l~~~--~~~~~~~~~~~~~~~~~~~  236 (416)
                      .+..   ............       .+.        .........+...|+.+|++++  ..++.++.++........ 
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~~~-  199 (492)
T TIGR02733       121 FWQLCSQLHQSNWRFAGRDPVLPPRNYWDLLQLVSALRPDTLLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKLYS-  199 (492)
T ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhcChhhhhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHHhhhc-
Confidence            1111   111100000000       000        0000001123458999999986  467788887754322111 


Q ss_pred             CchhhhhhhchhhHHHHHHHHHhhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEE
Q 014883          237 DQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKG  316 (416)
Q Consensus       237 ~~~~~~~~~s~~~~~~~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~g  316 (416)
                      ...+  .+.++..++.    ++ .+....  .| .++++||+++|+++|++.+++.|++|+++++|++|.++  ++++.+
T Consensus       200 ~~~~--~~~~~~~~~~----~~-~~~~~~--~G-~~~~~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~--~~~~~g  267 (492)
T TIGR02733       200 QEDA--DETAALYGAT----VL-QMAQAP--HG-LWHLHGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTK--GGRAGW  267 (492)
T ss_pred             cCCh--hhhhHHHHHH----Hh-hccccC--CC-ceeecCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEEe--CCeEEE
Confidence            1111  1222221110    11 111111  12 46899999999999999999999999999999999987  666667


Q ss_pred             EEeCCC-----cEEEcCEEEEC-CCCCCCCCCCCchhhhhhhhhhccccCCcc-eEEEEEEEecCCCCC-C-CCceEEEe
Q 014883          317 VRLASG-----QDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKG-KVARGICITRSSLKP-D-LSNFLVIF  387 (416)
Q Consensus       317 V~l~~G-----~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~-~~~k~i~i~~~p~~~-~-~~~~~~~~  387 (416)
                      |++.+|     +++.||+||++ |...+..+..  ++.+++.+....++..+. ......+.++++..+ + .....+.+
T Consensus       268 v~~~~~~~~~~~~~~ad~VI~~~~~~~~~~ll~--~~~~~~~~~~~~~~~~~s~~~~~v~l~~~~~~~~~~~~~~~~~~~  345 (492)
T TIGR02733       268 VVVVDSRKQEDLNVKADDVVANLPPQSLLELLG--PLGLPPGYRKRLKKLPEPSGAFVFYLGVKRAALPVDCPPHLQFLS  345 (492)
T ss_pred             EEEecCCCCceEEEECCEEEECCCHHHHHHhcC--cccCCHHHHHHHhcCCCCCceEEEEEeecccccCCCCCcceeecc
Confidence            776665     57999999965 3333344432  234443322222222332 233455666763221 1 12333333


Q ss_pred             CCCCCCCCCCCeEEEEEecCCCccCCCCC
Q 014883          388 PPRSLFPEQVTSIRVLQLGGNLAVCPLGM  416 (416)
Q Consensus       388 pp~~~~~~~~~~v~~~~~~~~~~~~p~G~  416 (416)
                      .+       ...++|...+.+.+.+|+|+
T Consensus       346 ~~-------~~~~~v~~~~~d~~~aP~G~  367 (492)
T TIGR02733       346 DH-------QGSLFVSISQEGDGRAPQGE  367 (492)
T ss_pred             CC-------CceEEEEeCCccccCCCCCc
Confidence            32       12688877777778899885

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=99.95  E-value=7.2e-26  Score=228.19  Aligned_cols=287  Identities=15%  Similarity=0.153  Sum_probs=185.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhC----CCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCccccccccccc
Q 014883           22 AFDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYA   97 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~----G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (416)
                      +.||||||||++||+||+.|+++    |++|+|||+++++||+++|++.+                              
T Consensus         2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~------------------------------   51 (462)
T TIGR00562         2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKED------------------------------   51 (462)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeC------------------------------
Confidence            36999999999999999999999    99999999999999999997643                              


Q ss_pred             cccccCCCCceEeeCCCCeEEeeCc-hHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhhcCCCChHHHH
Q 014883           98 SRLLSQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKN  176 (416)
Q Consensus        98 ~~~~~~~~~~~~~dl~Gp~~~~~~~-~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~  176 (416)
                               +|.+|+ |++++...+ .+.+++.++|+.+++.+......+++..+|+.+++|.+..+.++...+++.++.
T Consensus        52 ---------g~~~e~-G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~  121 (462)
T TIGR00562        52 ---------GYLIER-GPDSFLERKKSAPDLVKDLGLEHVLVSDATGQRYVLVNRGKLMPVPTKIAPFVKTGLFSLGGKL  121 (462)
T ss_pred             ---------CEEEec-CccccccCChHHHHHHHHcCCCcccccCCCCceEEEECCCceecCCCChHHHhcCCCCCchhhH
Confidence                     355788 588886555 588999999998776543333344443238888888776666655555554444


Q ss_pred             HHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHHhccCCchhhhhhhchhhHHHHHHH
Q 014883          177 QLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLAL  256 (416)
Q Consensus       177 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~  256 (416)
                      .+.  +..   ....           ....+.|+.+|+++..-.+....++. .+....+..++  +++|+..++..+..
T Consensus       122 ~~~--~~~---~~~~-----------~~~~d~s~~e~l~~~~g~~~~~~~~~-p~~~~~~~~~~--~~ls~~~~~~~~~~  182 (462)
T TIGR00562       122 RAG--MDF---IRPA-----------SPGKDESVEEFVRRRFGDEVVENLIE-PLLSGIYAGDP--SKLSLKSTFPKFYQ  182 (462)
T ss_pred             Hhh--hhh---ccCC-----------CCCCCcCHHHHHHHhcCHHHHHHHHH-HHhcccccCCH--HHhhHHHHhHHHHH
Confidence            322  111   1000           01235899999986533333333332 22222233333  35676655443321


Q ss_pred             HH-------hhh------------ccccCCCcc-EEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEE
Q 014883          257 YN-------SSI------------GRFQNALGA-LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKG  316 (416)
Q Consensus       257 ~~-------~s~------------~~~g~~~~~-~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~g  316 (416)
                      ..       .++            ..+....+. +.+++||+++|+++|++.+.  .++|++|++|++|..+  ++. +.
T Consensus       183 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~--~~~i~~~~~V~~I~~~--~~~-~~  257 (462)
T TIGR00562       183 TEQKHGSLILGMKKTRNLPQGSGLQLTAKKQGQDFQTLATGLETLPEEIEKRLK--LTKVYKGTKVTKLSHR--GSN-YT  257 (462)
T ss_pred             HHHhcCcHHHHHHhhcccCccccccccccccCCceEecchhHHHHHHHHHHHhc--cCeEEcCCeEEEEEec--CCc-EE
Confidence            11       010            001111122 67799999999999976543  2789999999999876  333 56


Q ss_pred             EEeCCCcEEEcCEEEEC-CCCCCCCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCCC
Q 014883          317 VRLASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL  376 (416)
Q Consensus       317 V~l~~G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~  376 (416)
                      |++++|+++.||+||++ |...+..+.    ++++....+...+..+..+.++.+.|++|+
T Consensus       258 v~~~~g~~~~ad~VI~t~P~~~~~~ll----~~~~~~~~~~l~~l~~~~~~~v~l~~~~~~  314 (462)
T TIGR00562       258 LELDNGVTVETDSVVVTAPHKAAAGLL----SELSNSASSHLDKIHSPPVANVNLGFPEGS  314 (462)
T ss_pred             EEECCCcEEEcCEEEECCCHHHHHHHh----cccCHHHHHHHhcCCCCceEEEEEEEchHH
Confidence            77778889999999964 544434432    233343444445567888999999998874

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>TIGR02730 carot_isom carotene isomerase

Probab=99.95  E-value=3.6e-26  Score=231.68  Aligned_cols=335  Identities=15%  Similarity=0.156  Sum_probs=198.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCcccccccccccccccc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS  102 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (416)
                      |||||||||++||+||++|+++|++|+||||++.+||++++++.+|                                  
T Consensus         1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G----------------------------------   46 (493)
T TIGR02730         1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFEREG----------------------------------   46 (493)
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEeccCC----------------------------------
Confidence            6999999999999999999999999999999999999999987654                                  


Q ss_pred             CCCCceEeeCCCCeEEe------eCchHHHHHHhcCccccccccccccee-eeccCCceeecCCChhhhhhc-CCCChHH
Q 014883          103 QHPRNFNLDVSGPRVLF------CADHAVDLMLKSGASHYLEFKSIDATF-MLDADAKLCSVPDSRAAIFKD-KSLGLME  174 (416)
Q Consensus       103 ~~~~~~~~dl~Gp~~~~------~~~~~~~~l~~~g~~~~~~f~~~~~~~-~~~~~g~~~~~p~~~~~~~~~-~~l~~~~  174 (416)
                           |.+|. |++++.      ....+.+.+..++.  .+++...+..+ +...+|..+.++.+....... ....+.+
T Consensus        47 -----~~fd~-g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~l~~~~P~~  118 (493)
T TIGR02730        47 -----YRFDV-GASMIFGFGDKGTTNLLTRALAAVGR--KLETIPDPVQIHYHLPNGLNVKVHREYDDFIQELVAKFPHE  118 (493)
T ss_pred             -----EEEEe-cchhheecCCcccccHHHHHHHHcCC--cccccCCCccEEEECCCCeeEeeecCHHHHHHHHHHHCchh
Confidence                 44555 355432      12234445544442  23343333222 222356666777665433221 1224667


Q ss_pred             HHHHHHHHHHHHhhcC----------CCccc-cc-ccc------ccccccCCcHHHHHHhcCCChhHHHHHHHHHHhccC
Q 014883          175 KNQLMRFFKLVQGHLS----------LDESE-EN-NVR------ISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADY  236 (416)
Q Consensus       175 k~~l~~~~~~~~~~~~----------~~~~~-~~-~~~------~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~  236 (416)
                      ...+.+|++.++....          ..+.. .. ...      ....+...++.++++++..++.+++++.........
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~  198 (493)
T TIGR02730       119 KEGIRRFYDECWQVFNCLNSMELLSLEEPRYLFRVFFKHPLACLGLAKYLPQNAGDIARRYIRDPGLLKFIDIECFCWSV  198 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccccChHHHHHHHhhchhhhhHHHHHhhccHHHHHHHhcCCHHHHHHHHHHHHhccC
Confidence            6777777665433211          00000 00 000      011233578999999999999999977632122111


Q ss_pred             CchhhhhhhchhhHHHHHHHHHhhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEE
Q 014883          237 DQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKG  316 (416)
Q Consensus       237 ~~~~~~~~~s~~~~~~~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~g  316 (416)
                      ...   ++.+.   +..+..+.  ...++    ...+|.||++.|+++|.+.++++|++|+++++|++|..+  ++++++
T Consensus       199 ~p~---~~~p~---~~~~~~~~--~~~~~----g~~~~~gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~--~~~~~g  264 (493)
T TIGR02730       199 VPA---DQTPM---INAGMVFS--DRHYG----GINYPKGGVGQIAESLVKGLEKHGGQIRYRARVTKIILE--NGKAVG  264 (493)
T ss_pred             CCc---ccchh---hhHHHhhc--ccccc----eEecCCChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEec--CCcEEE
Confidence            110   11222   12122111  11122    267999999999999999999999999999999999987  678889


Q ss_pred             EEeCCCcEEEcCEEEEC--CCCCCCCCCCC--chhhhhhhhhhccccCCcceEEEEEEEecCCCCCCCCc-eEEEeCCCC
Q 014883          317 VRLASGQDILSHKLVLD--PSFTVPGSLAS--SHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSN-FLVIFPPRS  391 (416)
Q Consensus       317 V~l~~G~~i~Ad~VI~~--p~~~~~~l~~~--~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~~~~~~~-~~~~~pp~~  391 (416)
                      |++.+|+++.||+||++  +..++..|...  .++.++..++.+.   ...+.....+.+++++.+.... ..++++.-.
T Consensus       265 v~~~~g~~~~ad~vV~a~~~~~~~~~Ll~~~~~~~~~~~~~~~~~---~s~s~~~~~l~l~~~~~p~~~~~~~~~~~~~~  341 (493)
T TIGR02730       265 VKLADGEKIYAKRIVSNATRWDTFGKLLKAENLPKKEKNWQRNYV---KSPSFLSLHLGVKADVLPPGTECHHILLEDWT  341 (493)
T ss_pred             EEeCCCCEEEcCEEEECCChHHHHHHhCCccccchhhHHHHhhcc---CCCceEEEEEEecCccCCCCCCccEEecchhh
Confidence            99989999999999965  43444444321  1122222222221   2234555666677765432211 123334211


Q ss_pred             CCCCCCCeEEEEEec-CCCccCCCCC
Q 014883          392 LFPEQVTSIRVLQLG-GNLAVCPLGM  416 (416)
Q Consensus       392 ~~~~~~~~v~~~~~~-~~~~~~p~G~  416 (416)
                      ......+.++|...+ .|.+.+|+|+
T Consensus       342 ~~~~~~~~~~v~~ps~~dps~aP~G~  367 (493)
T TIGR02730       342 NLEKPQGTIFVSIPTLLDPSLAPEGH  367 (493)
T ss_pred             ccCCCCCeEEEEeCCCCCCCCCcCCc
Confidence            112234678887755 3578889885

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=99.94  E-value=1.3e-25  Score=226.24  Aligned_cols=284  Identities=13%  Similarity=0.180  Sum_probs=179.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhC------CCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCcccccccccc
Q 014883           23 FDLIVIGTGLPESVISAAASAS------GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNY   96 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~------G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (416)
                      .+|||||||++||+||+.|+++      |++|+|||+++|+||+++|.+..                             
T Consensus         2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~-----------------------------   52 (463)
T PRK12416          2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEK-----------------------------   52 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeC-----------------------------
Confidence            3799999999999999999996      48999999999999999998643                             


Q ss_pred             ccccccCCCCceEeeCCCCeEEeeC-chHHHHHHhcCcccccccccccceeeeccCCceeecCCC--------hhhhhhc
Q 014883           97 ASRLLSQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDS--------RAAIFKD  167 (416)
Q Consensus        97 ~~~~~~~~~~~~~~dl~Gp~~~~~~-~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~--------~~~~~~~  167 (416)
                                +|.+|+ |+++++.. ..+.+++.++|+++++.+......+++. +|...++|.+        ..+.++.
T Consensus        53 ----------g~~~e~-G~~~i~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~p~~~~~~~~~  120 (463)
T PRK12416         53 ----------DFIMES-GADSIVARNEHVMPLVKDLNLEEEMVYNETGISYIYS-DNTLHPIPSDTIFGIPMSVESLFSS  120 (463)
T ss_pred             ----------CEEEec-CcHHHhcCCHHHHHHHHHcCCccceecCCCCceEEEE-CCeEEECCCCCeecCCCChHHhhcC
Confidence                      245788 48887543 4678899999998776555443445553 5666666542        2222322


Q ss_pred             CCCChHHHHHHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHHhccCCchhhhhhhch
Q 014883          168 KSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKT  247 (416)
Q Consensus       168 ~~l~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  247 (416)
                      ..++...|..      .+.+....      .   ...+.+.|+.+|+++..-++..+.++.. +...-+..++  .++|+
T Consensus       121 ~~~~~~~~~~------~~~~~~~~------~---~~~~~~~sv~~~l~~~~~~~~~~~~~~p-~~~~~~~~~~--~~ls~  182 (463)
T PRK12416        121 TLVSTKGKIV------ALKDFITK------N---KEFTKDTSLALFLESFLGKELVERQIAP-VLSGVYSGKL--NELTM  182 (463)
T ss_pred             CcCCHHHHHH------hhhhhccC------C---CCCCCCCCHHHHHHHhcCHHHHHHHHHH-HhcccccCCc--ccccH
Confidence            3333222221      11111100      0   0123578999999975333333333332 1222233333  34666


Q ss_pred             hhHHHHHHHHHhhhccc------------cCCCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEE
Q 014883          248 RDGINRLALYNSSIGRF------------QNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYK  315 (416)
Q Consensus       248 ~~~~~~~~~~~~s~~~~------------g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~  315 (416)
                      ...+..+..+....+..            ......+.+++||+++|+++|++.+..  ++|++|++|++|..+  +++ +
T Consensus       183 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~--~~i~~~~~V~~I~~~--~~~-~  257 (463)
T PRK12416        183 ASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSFKGGLSTIIDRLEEVLTE--TVVKKGAVTTAVSKQ--GDR-Y  257 (463)
T ss_pred             HHhhHHHHHHHHhcCcHHHHHHHhhhccCCCCCCceEeeCCCHHHHHHHHHHhccc--ccEEcCCEEEEEEEc--CCE-E
Confidence            54444444433222110            011122778999999999999876533  689999999999986  444 5


Q ss_pred             EEEeCCCcEEEcCEEEEC-CCCCCCCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCCC
Q 014883          316 GVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL  376 (416)
Q Consensus       316 gV~l~~G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~  376 (416)
                      .|++.+|+++.||+||++ |...+..+.  .+|+++....++    .+..+.++.+.|++++
T Consensus       258 ~v~~~~g~~~~ad~VI~a~p~~~~~~ll--~~~~l~~~~~~~----~~~~~~~v~l~~~~~~  313 (463)
T PRK12416        258 EISFANHESIQADYVVLAAPHDIAETLL--QSNELNEQFHTF----KNSSLISIYLGFDILD  313 (463)
T ss_pred             EEEECCCCEEEeCEEEECCCHHHHHhhc--CCcchhHHHhcC----CCCceEEEEEEechhh
Confidence            777778888999999954 544445553  346666654444    3457888889999764

>PLN02576 protoporphyrinogen oxidase

Probab=99.94  E-value=7.8e-25  Score=222.54  Aligned_cols=291  Identities=17%  Similarity=0.170  Sum_probs=184.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhC-CCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCcccccccccccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~-G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (416)
                      ..++||||||||++||+||++|+++ |++|+|||+++++||+++|++.+|                              
T Consensus        10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~~~g------------------------------   59 (496)
T PLN02576         10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSEDG------------------------------   59 (496)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEeccCC------------------------------
Confidence            4457999999999999999999999 999999999999999999986532                              


Q ss_pred             ccccCCCCceEeeCCCCeEEeeCchHHHHHHhcCcccccccccc-cceeeeccCCceeecCCChhhhhhcCCCChHHHHH
Q 014883           99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI-DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQ  177 (416)
Q Consensus        99 ~~~~~~~~~~~~dl~Gp~~~~~~~~~~~~l~~~g~~~~~~f~~~-~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~  177 (416)
                               |.+|. ||+++...++.+..+.+.|+.+++.|... ...+++. +|+.+++|.+..+.+....++..+|..
T Consensus        60 ---------~~~d~-G~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~~~~~~~~~~  128 (496)
T PLN02576         60 ---------FIWEE-GPNSFQPSDPELTSAVDSGLRDDLVFPDPQAPRYVVW-NGKLRPLPSNPIDLPTFDLLSAPGKIR  128 (496)
T ss_pred             ---------eEEec-CCchhccCcHHHHHHHHcCChhheecCCCCceEEEEE-CCEEEEcCCChHHhcCcCcCChhHHHH
Confidence                     45777 58888766666666666688877666432 2345443 788898988766666656666665554


Q ss_pred             HHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHHhccCCchhhhhhhchhhHHHHHHHH
Q 014883          178 LMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALY  257 (416)
Q Consensus       178 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~  257 (416)
                      +....  . .+...          .....+.|+.+|+++. +.+.+.+.+...+....+..++  .++|+..++..+..+
T Consensus       129 ~~~~~--~-~~~~~----------~~~~~~~sv~~~l~~~-~g~~~~~~~~~p~~~~~~~~~~--~~lS~~~~~~~~~~~  192 (496)
T PLN02576        129 AGLGA--F-GWKRP----------PPPGREESVGEFVRRH-LGDEVFERLIDPFVSGVYAGDP--SSLSMKAAFPKLWNL  192 (496)
T ss_pred             HhHHH--h-hccCC----------CCCCCCCcHHHHHHHh-cCHHHHHHHHHHHhCceecCCH--HHHhHHHHhHHHHHH
Confidence            32111  1 01000          0113468999999975 4555554443332223344443  457776655443322


Q ss_pred             Hhhhcc--------c----------------c-CCCccEEeecCCcchHHHHHHHHHHhcC-cEEEcCCceeEEEEecCC
Q 014883          258 NSSIGR--------F----------------Q-NALGALIYPIYGQGELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNS  311 (416)
Q Consensus       258 ~~s~~~--------~----------------g-~~~~~~~~p~gG~~~l~~al~r~~~~~G-g~i~l~~~V~~I~~~~~~  311 (416)
                      ....+.        .                . .......+++||+++|+++|++   .++ ++|++|++|++|..+  +
T Consensus       193 e~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~L~~~la~---~l~~~~i~l~~~V~~I~~~--~  267 (496)
T PLN02576        193 EKRGGSIIGGAIKAIQEAKKNPKPEPRDPRLPKPKGQTVGSFRGGLQTLPDALAK---RLGKDKVKLNWKVLSLSKN--D  267 (496)
T ss_pred             HHhcCcHHHHHHHhhhhhcccccccccccccccccCCeeEeccchHHHHHHHHHH---hhCcCcEEcCCEEEEEEEC--C
Confidence            110000        0                0 0112256789999999998875   446 789999999999986  3


Q ss_pred             CcEEEEEe--CCCc-EEEcCEEEEC-CCCCCCCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCCC
Q 014883          312 GSYKGVRL--ASGQ-DILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL  376 (416)
Q Consensus       312 g~~~gV~l--~~G~-~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~  376 (416)
                      +..+.|++  .+|+ ++.||+||++ |...+..+..+..+   ...+.+ ....+..+.++.+.|++++
T Consensus       268 ~~~~~v~~~~~~g~~~~~ad~VI~a~P~~~l~~ll~~~~~---~~~~~l-~~~~~~~~~~v~l~~~~~~  332 (496)
T PLN02576        268 DGGYSLTYDTPEGKVNVTAKAVVMTAPLYVVSEMLRPKSP---AAADAL-PEFYYPPVAAVTTSYPKEA  332 (496)
T ss_pred             CCcEEEEEecCCCceeEEeCEEEECCCHHHHHHHhcccCH---HHHHHh-ccCCCCceEEEEEEEchHH
Confidence            32133433  3453 6999999964 55444554322222   222223 3446777888888898864

>PRK07233 hypothetical protein; Provisional

Probab=99.94  E-value=4e-25  Score=220.94  Aligned_cols=288  Identities=15%  Similarity=0.155  Sum_probs=178.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCccccccccccccccccC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ  103 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (416)
                      +|||||||++||+||+.|+++|++|+|||+++++||+++++..+|                                   
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g-----------------------------------   45 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGG-----------------------------------   45 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCC-----------------------------------
Confidence            589999999999999999999999999999999999999987643                                   


Q ss_pred             CCCceEeeCCCCeEEee-CchHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhhcCCCChHHHHHHHHHH
Q 014883          104 HPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFF  182 (416)
Q Consensus       104 ~~~~~~~dl~Gp~~~~~-~~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l~~~~  182 (416)
                          |.+|. |.++++. ...+.+++.++|+.....+......+.+  +|+.++++. ....++...+++.++..+....
T Consensus        46 ----~~~d~-g~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  117 (434)
T PRK07233         46 ----LPIER-FYHHIFKSDEALLELLDELGLEDKLRWRETKTGYYV--DGKLYPLGT-PLELLRFPHLSLIDKFRLGLLT  117 (434)
T ss_pred             ----cchhh-hhhhhccccHHHHHHHHHcCCCCceeeccCceEEEE--CCeEecCCC-HHHHHcCCCCCHHHHHHhHHHH
Confidence                22444 2454433 3478889999998765555443333332  555554432 2234444455555555432222


Q ss_pred             HHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHHhccCCchhhhhhhchhhHHHHHHHHHhhhc
Q 014883          183 KLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIG  262 (416)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~s~~  262 (416)
                      ......           ....++...|+.+|+++...++..+.++... ....+..++  +++|+..++..+..+...  
T Consensus       118 ~~~~~~-----------~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~s~~~~~~~~~~~~~~--  181 (434)
T PRK07233        118 LLARRI-----------KDWRALDKVPAEEWLRRWSGEGVYEVFWEPL-LESKFGDYA--DDVSAAWLWSRIKRRGNR--  181 (434)
T ss_pred             Hhhhhc-----------ccccccccccHHHHHHHhcCHHHHHHHHHHH-HhcccCCCc--cccCHHHHHHHHhhhhcc--
Confidence            111100           0022445689999999865544444544322 111122222  356765544433322110  


Q ss_pred             cccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC-CCCCCCCC
Q 014883          263 RFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGS  341 (416)
Q Consensus       263 ~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~-p~~~~~~l  341 (416)
                      ........+.+|+||++.|+++|++.++..|++|++|++|++|..+  +++++.+. .++++++||+||++ |...+.++
T Consensus       182 ~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~--~~~~~~~~-~~~~~~~ad~vI~a~p~~~~~~l  258 (434)
T PRK07233        182 RYSLFGEKLGYLEGGFATLIDALAEAIEARGGEIRLGTPVTSVVID--GGGVTGVE-VDGEEEDFDAVISTAPPPILARL  258 (434)
T ss_pred             ccccCCceEeccCCCHHHHHHHHHHHHHhcCceEEeCCCeeEEEEc--CCceEEEE-eCCceEECCEEEECCCHHHHHhh
Confidence            0100011267899999999999999999999999999999999986  56555555 57789999999954 44444554


Q ss_pred             CCCchhhhhhhhhhccccCCcceEEEEEEEecCCCC
Q 014883          342 LASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK  377 (416)
Q Consensus       342 ~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~~  377 (416)
                      ..    +++.......+...+..+.+..+-+++|+.
T Consensus       259 l~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  290 (434)
T PRK07233        259 VP----DLPADVLARLRRIDYQGVVCMVLKLRRPLT  290 (434)
T ss_pred             cC----CCcHHHHhhhcccCccceEEEEEEecCCCC
Confidence            32    222222222233445567777777888753

>PRK07208 hypothetical protein; Provisional

Probab=99.94  E-value=2.5e-24  Score=217.87  Aligned_cols=292  Identities=14%  Similarity=0.171  Sum_probs=177.5

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCcccccccccccc
Q 014883           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (416)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (416)
                      ||...||||||||++||+||+.|+++|++|+|+|+++++||++.|.+.+|                              
T Consensus         1 ~~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~~g------------------------------   50 (479)
T PRK07208          1 MTNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYKG------------------------------   50 (479)
T ss_pred             CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeeccCC------------------------------
Confidence            46678999999999999999999999999999999999999999976533                              


Q ss_pred             ccccCCCCceEeeCCCCeEEeeCc-hHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhhcCCCChHHHHH
Q 014883           99 RLLSQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQ  177 (416)
Q Consensus        99 ~~~~~~~~~~~~dl~Gp~~~~~~~-~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~  177 (416)
                               +.+|. |+++++..+ .+.+++.+++..+....... ..+++. +|+...+|.+..+.+.  .+++.++..
T Consensus        51 ---------~~~d~-G~h~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~-~g~~~~~p~~~~~~l~--~~~~~~~~~  116 (479)
T PRK07208         51 ---------NRFDI-GGHRFFSKSPEVMDLWNEILPDDDFLLRPR-LSRIYY-RGKFFDYPLKAFDALK--NLGLWRTAK  116 (479)
T ss_pred             ---------ceEcc-CCceeccCCHHHHHHHHHhcCCCccccccc-cceEEE-CCEEecCCcchhHHHH--hCCHhHHHH
Confidence                     34677 488775544 67888888876332222211 222332 6788778765333332  233333222


Q ss_pred             HHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHH-HHHHhccCCchhhhhhhchhhHHHHH--
Q 014883          178 LMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVL-YAIAMADYDQEVSEYVLKTRDGINRL--  254 (416)
Q Consensus       178 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~--  254 (416)
                      +.  ...+....            .....+.|+.+|+++..-.+..+.++. +....  |..++  +++|+.+++.++  
T Consensus       117 ~~--~~~~~~~~------------~~~~~~~s~~e~l~~~~g~~~~~~~~~p~~~~~--~~~~~--~~~s~~~~~~~~~~  178 (479)
T PRK07208        117 CG--ASYLKARL------------RPRKEEDSFEDWVINRFGRRLYSTFFKGYTEKV--WGVPC--DEISADWAAQRIKG  178 (479)
T ss_pred             HH--HHHHHHhc------------CCCCCCCCHHHHHHHhhCHHHHHHHHHHhhhhh--hCCCh--HHCCChHHhCcccC
Confidence            11  11111110            011246899999996433333333333 22222  33333  357766543221  


Q ss_pred             -------HHHHhhh-c-------cccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEe
Q 014883          255 -------ALYNSSI-G-------RFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL  319 (416)
Q Consensus       255 -------~~~~~s~-~-------~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l  319 (416)
                             ...+... +       ..+.....+.+|+||+++|+++|++.++..|++|++|++|++|.++. ++.++.|..
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~-~~~v~~~~~  257 (479)
T PRK07208        179 LSLGKAIRNALRRSLGLKRRNKEVETSLIEEFRYPKLGPGQLWETAAEKLEALGGKVVLNAKVVGLHHDG-DGRIAVVVV  257 (479)
T ss_pred             CCHHHHHHHHhhhcccccccCCCccccceeEEeCCCCCcchHHHHHHHHHHHcCCEEEeCCEEEEEEEcC-CcEEEEEEE
Confidence                   1111110 0       00100123779999999999999999999999999999999999872 443444443


Q ss_pred             --CCCc--EEEcCEEEEC-CCCCCCCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCCC
Q 014883          320 --ASGQ--DILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL  376 (416)
Q Consensus       320 --~~G~--~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~  376 (416)
                        .+|+  ++.||+||++ |...+.++.   .++++.......++..+..++++.+.++++.
T Consensus       258 ~~~~g~~~~~~ad~VI~a~p~~~l~~~l---~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~  316 (479)
T PRK07208        258 NDTDGTEETVTADQVISSMPLRELVAAL---DPPPPPEVRAAAAGLRYRDFITVGLLVKELN  316 (479)
T ss_pred             EcCCCCEEEEEcCEEEECCCHHHHHHhc---CCCCCHHHHHHHhCCCcceeEEEEEEecCCC
Confidence              2353  5899999965 433223332   1334444444444556677888888888874

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=99.94  E-value=1.3e-24  Score=218.27  Aligned_cols=295  Identities=14%  Similarity=0.171  Sum_probs=176.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCC--CeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCccccccccccccccc
Q 014883           24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL  101 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G--~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (416)
                      +|||||||++||+||+.|+++|  ++|+|||+++++||+++|++..|                                 
T Consensus         2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~g---------------------------------   48 (451)
T PRK11883          2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDG---------------------------------   48 (451)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeCC---------------------------------
Confidence            7999999999999999999988  99999999999999999986543                                 


Q ss_pred             cCCCCceEeeCCCCeEEeeCc-hHHHHHHhcCcccccccccccceeeeccCCceeecCCCh--------hhhhhcCCCCh
Q 014883          102 SQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSR--------AAIFKDKSLGL  172 (416)
Q Consensus       102 ~~~~~~~~~dl~Gp~~~~~~~-~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~--------~~~~~~~~l~~  172 (416)
                            +.+|+ |+++++..+ .+.+++.++|+..+..+......+++. +|+.+.+|...        ...+..+.++.
T Consensus        49 ------~~~d~-G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~  120 (451)
T PRK11883         49 ------FPIEL-GPESFLARKPSAPALVKELGLEDELVANTTGQSYIYV-NGKLHPIPPGTVMGIPTSIAPFLFAGLVSP  120 (451)
T ss_pred             ------eEEec-ChHHhcCCcHHHHHHHHHcCCccceecCCCCcceEEE-CCeEEECCCCCeeccCCCchhhhcCCCCCH
Confidence                  34677 466554333 578889999987654433212224443 67777766421        00000111111


Q ss_pred             HHHHHHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHHhccCCchhhhhhhchhhHHH
Q 014883          173 MEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGIN  252 (416)
Q Consensus       173 ~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  252 (416)
                      .++.+.      ......         .......++|+.+|+++. .++...+.+...+....+..++  .++|+...+.
T Consensus       121 ~~~~~~------~~~~~~---------~~~~~~~~~s~~e~l~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~  182 (451)
T PRK11883        121 IGKLRA------AADLRP---------PRWKPGQDQSVGAFFRRR-FGDEVVENLIEPLLSGIYAGDI--DTLSLRATFP  182 (451)
T ss_pred             HHHHHh------hCcccC---------CCCCCCCCcCHHHHHHHh-ccHHHHHHHHHHhhceeecCCh--HHccHHHhHH
Confidence            111110      001100         001234578999999864 4444443333222222233333  3466655444


Q ss_pred             HHHHHHhhhc-----------ccc-CCCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeC
Q 014883          253 RLALYNSSIG-----------RFQ-NALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA  320 (416)
Q Consensus       253 ~~~~~~~s~~-----------~~g-~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~  320 (416)
                      .+..+....+           ... .....+.+++||++.|+++|++.+...  +|++|++|++|..+  ++. +.|++.
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~l~~~--~i~~~~~V~~i~~~--~~~-~~v~~~  257 (451)
T PRK11883        183 QLAQAEDKYGSLLRGMRKALPKEKKKTKGVFGTLKGGLQSLIEALEEKLPAG--TIHKGTPVTKIDKS--GDG-YEIVLS  257 (451)
T ss_pred             HHHHHHHhcCcHHHHHHhhccccCCCCCCceEeeccHHHHHHHHHHHhCcCC--eEEeCCEEEEEEEc--CCe-EEEEEC
Confidence            3333322111           000 001226689999999999987654322  89999999999876  443 567778


Q ss_pred             CCcEEEcCEEEEC-CCCCCCCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCCCCCCCCceEEEeC
Q 014883          321 SGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFP  388 (416)
Q Consensus       321 ~G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~~~~~~~~~~~~p  388 (416)
                      +|+++.||+||++ |...+.++..  ++++..    ..++..++.+.++.+.+++|+...+...-+.++
T Consensus       258 ~g~~~~~d~vI~a~p~~~~~~l~~--~~~~~~----~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~  320 (451)
T PRK11883        258 NGGEIEADAVIVAVPHPVLPSLFV--APPAFA----LFKTIPSTSVATVALAFPESATNLPDGTGFLVA  320 (451)
T ss_pred             CCCEEEcCEEEECCCHHHHHHhcc--ChhHHH----HHhCCCCCceEEEEEEeccccCCCCCceEEEec
Confidence            8999999999954 4444455422  233322    223456788999999999997333333333344

>TIGR02731 phytoene_desat phytoene desaturase

Probab=99.93  E-value=5.3e-24  Score=213.97  Aligned_cols=295  Identities=17%  Similarity=0.169  Sum_probs=183.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCccccccccccccccccC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ  103 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (416)
                      +|+|||||++||+||++|+++|++|+|||+++++||+++|++..                                    
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~------------------------------------   44 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDE------------------------------------   44 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECC------------------------------------
Confidence            58999999999999999999999999999999999999987421                                    


Q ss_pred             CCCceEeeCCCCeEEee-CchHHHHHHhcCcccccccccccceeee-ccCCcee--ecC---CCh---hhhhh-cCCCCh
Q 014883          104 HPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKSIDATFML-DADAKLC--SVP---DSR---AAIFK-DKSLGL  172 (416)
Q Consensus       104 ~~~~~~~dl~Gp~~~~~-~~~~~~~l~~~g~~~~~~f~~~~~~~~~-~~~g~~~--~~p---~~~---~~~~~-~~~l~~  172 (416)
                        .++.+|. |++++.. ...+.+++.++|+.+.+.|......+.. ..++...  .+|   ...   .++++ ...+++
T Consensus        45 --~g~~~d~-G~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (453)
T TIGR02731        45 --DGDWYET-GLHIFFGAYPNMLQLLKELNIEDRLQWKSHSMIFNQPDKPGTFSRFDFPDIPAPFNGVAAILRNNDMLTW  121 (453)
T ss_pred             --CCCEEEc-CcceeccCCchHHHHHHHcCCccceeecCCceEEecCCCCcceeeccCCCCCCCHHHHHHHhcCcCCCCH
Confidence              1234677 4777644 3478889999999877666543332221 1122222  112   111   11121 123445


Q ss_pred             HHHHHHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHHhccCCchhhhhhhchhhHHH
Q 014883          173 MEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGIN  252 (416)
Q Consensus       173 ~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  252 (416)
                      .++.++..-+...  ....       .+...++.+.|+.+|+++.+.++.+.+.+...+....+..++  .++|+..++.
T Consensus       122 ~~~~~~~~~~~~~--~~~~-------~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~~~~~~p--~~~S~~~~~~  190 (453)
T TIGR02731       122 PEKIKFAIGLLPA--IVRG-------QKYVEEQDKYTVTEWLRKQGVPERVNDEVFIAMSKALNFINP--DELSMTVVLT  190 (453)
T ss_pred             HHHHHHHHHhHHH--HhcC-------ccchhhhccCCHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCH--HHHHHHHHHH
Confidence            5554433211110  0000       011234568999999999999988776433221111122333  3577777666


Q ss_pred             HHHHHHhhhccccCCCccEEeecCC-cchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCc-----EEE
Q 014883          253 RLALYNSSIGRFQNALGALIYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ-----DIL  326 (416)
Q Consensus       253 ~~~~~~~s~~~~g~~~~~~~~p~gG-~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~-----~i~  326 (416)
                      .+..++.  ..++.   ...+..|| ++.++++|.+.++..|++|++|++|++|.++ +++++++|++.+|+     ++.
T Consensus       191 ~l~~~~~--~~~g~---~~~~~~g~~~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~-~~~~v~~v~~~~~~~~~~~~~~  264 (453)
T TIGR02731       191 ALNRFLQ--ERHGS---KMAFLDGAPPERLCQPIVDYITSRGGEVRLNSRLKEIVLN-EDGSVKHFVLADGEGQRRFEVT  264 (453)
T ss_pred             HHHHHHh--cCCCC---eeEeecCCChHHHHHHHHHHHHhcCCEEeCCCeeEEEEEC-CCCCEEEEEEecCCCCceeEEE
Confidence            5555442  12221   13345554 5789999999998999999999999999875 26777788887665     799


Q ss_pred             cCEEEEC-CCCCCCCCCCCchhhhh--hhhhhccccCCcceEEEEEEEecCCCCC
Q 014883          327 SHKLVLD-PSFTVPGSLASSHQQLQ--ESFQAFSLSDNKGKVARGICITRSSLKP  378 (416)
Q Consensus       327 Ad~VI~~-p~~~~~~l~~~~~~~l~--~~~~~~~~~~~~~~~~k~i~i~~~p~~~  378 (416)
                      ||.||++ |...+.+++.   ..++  ...+.+. ....+.+.++.+.|++|+..
T Consensus       265 a~~VI~a~p~~~~~~lL~---~~~~~~~~~~~~~-~~~~~~~~~v~l~~~~~~~~  315 (453)
T TIGR02731       265 ADAYVSAMPVDIFKLLLP---QPWKQMPFFQKLN-GLEGVPVINVHIWFDRKLTT  315 (453)
T ss_pred             CCEEEEcCCHHHHHhhCc---hhhhcCHHHHHhh-cCCCCcEEEEEEEEccccCC
Confidence            9999954 4444455431   1111  1222232 23466899999999999864

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PLN02612 phytoene desaturase

Probab=99.93  E-value=6.8e-24  Score=217.21  Aligned_cols=295  Identities=14%  Similarity=0.139  Sum_probs=186.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCccccccccccccccc
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL  101 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (416)
                      ..||+|||+|++||+||++|+++|++|+|+|+++++||++.+++..                                  
T Consensus        93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~----------------------------------  138 (567)
T PLN02612         93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDE----------------------------------  138 (567)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcC----------------------------------
Confidence            4689999999999999999999999999999999999999997631                                  


Q ss_pred             cCCCCceEeeCCCCeEEeeC-chHHHHHHhcCcccccccccccceeeecc-CCcee--ec----CCC---hhhhhh-cCC
Q 014883          102 SQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDA-DAKLC--SV----PDS---RAAIFK-DKS  169 (416)
Q Consensus       102 ~~~~~~~~~dl~Gp~~~~~~-~~~~~~l~~~g~~~~~~f~~~~~~~~~~~-~g~~~--~~----p~~---~~~~~~-~~~  169 (416)
                          .++.+|. |++++... ..+.+++.++|+.+.++|......+.+.. ++...  .+    |..   ..++++ ...
T Consensus       139 ----~G~~~D~-G~h~~~g~~~~~~~ll~elG~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~P~~l~~~~~~l~~~~~  213 (567)
T PLN02612        139 ----DGDWYET-GLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILRNNEM  213 (567)
T ss_pred             ----CCCEEcC-CceEEeCCCchHHHHHHHhCCcccceecccceEEEecCCCCceeeCcCchhcCChhhhhHHHHhcCcc
Confidence                1234677 47877543 36888999999988777765443332211 12222  11    221   112221 223


Q ss_pred             CChHHHHHHHH-HHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhHHH-HHHHHHHhccCCchhhhhhhch
Q 014883          170 LGLMEKNQLMR-FFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS-IVLYAIAMADYDQEVSEYVLKT  247 (416)
Q Consensus       170 l~~~~k~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~  247 (416)
                      +++.++.++.. ++...   ..       ......++.+.|+.+|+++++.++.+.+ ++... ...-+..++  +++|+
T Consensus       214 ls~~~kl~~~~~~~~~~---~~-------~~~~~~~~d~~Sv~e~l~~~~~~~~~~~~~~~~l-~~~~~~~~p--~~~S~  280 (567)
T PLN02612        214 LTWPEKIKFAIGLLPAI---VG-------GQAYVEAQDGLSVKEWMRKQGVPDRVNDEVFIAM-SKALNFINP--DELSM  280 (567)
T ss_pred             CCHHHHHHHHHhhhHHh---cc-------cchhhhhcCcCcHHHHHHhcCCCHHHHHHHHHHH-HHHhcCCCH--HHhhH
Confidence            34444433221 11000   00       0011234567899999999999987775 33322 111122232  35677


Q ss_pred             hhHHHHHHHHHhhhccccCCCccEEeecCCc-chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEE
Q 014883          248 RDGINRLALYNSSIGRFQNALGALIYPIYGQ-GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDIL  326 (416)
Q Consensus       248 ~~~~~~~~~~~~s~~~~g~~~~~~~~p~gG~-~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~  326 (416)
                      ...+..+..++.  ...+   ....++.|+. ..|+++|++.++.+|++|++|++|++|..+ +++++++|++.+|+++.
T Consensus       281 ~~~l~~l~~~l~--~~~g---s~~~~~~G~~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~-~~g~v~~v~~~~G~~~~  354 (567)
T PLN02612        281 QCILIALNRFLQ--EKHG---SKMAFLDGNPPERLCMPIVDHFQSLGGEVRLNSRIKKIELN-DDGTVKHFLLTNGSVVE  354 (567)
T ss_pred             HHHHHHHHHHHh--ccCC---ceEeeecCCchHHHHHHHHHHHHhcCCEEEeCCeeeEEEEC-CCCcEEEEEECCCcEEE
Confidence            665555444432  1222   1255666664 689999999888899999999999999986 36767788888999999


Q ss_pred             cCEEEEC-CCCCCCCCCCCch--hhhhhhhhhccccCCcceEEEEEEEecCCCCC
Q 014883          327 SHKLVLD-PSFTVPGSLASSH--QQLQESFQAFSLSDNKGKVARGICITRSSLKP  378 (416)
Q Consensus       327 Ad~VI~~-p~~~~~~l~~~~~--~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~~~  378 (416)
                      ||+||++ |...+..+.....  .+++...+.    .....++++.+.|++|+..
T Consensus       355 ad~VI~a~p~~~l~~Ll~~~~~~~~~~~~l~~----l~~~~v~~v~l~~dr~~~~  405 (567)
T PLN02612        355 GDVYVSATPVDILKLLLPDQWKEIPYFKKLDK----LVGVPVINVHIWFDRKLKN  405 (567)
T ss_pred             CCEEEECCCHHHHHHhCcchhcCcHHHHHHHh----cCCCCeEEEEEEECcccCC
Confidence            9999965 5444444432111  233333322    2356789999999999854

>PLN02268 probable polyamine oxidase

Probab=99.92  E-value=1.5e-23  Score=209.70  Aligned_cols=279  Identities=13%  Similarity=0.144  Sum_probs=167.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCccccccccccccccccC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ  103 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (416)
                      +|||||||++||+||+.|+++|++|+||||++|+|||++|.+..|                                   
T Consensus         2 ~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~~~g-----------------------------------   46 (435)
T PLN02268          2 SVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYSFG-----------------------------------   46 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecCcCC-----------------------------------
Confidence            799999999999999999999999999999999999999965322                                   


Q ss_pred             CCCceEeeCCCCeEEee---CchHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhhcCCCChHHHHHHHH
Q 014883          104 HPRNFNLDVSGPRVLFC---ADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMR  180 (416)
Q Consensus       104 ~~~~~~~dl~Gp~~~~~---~~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l~~  180 (416)
                          +.+|+ |++|+..   +.++.+++.++|++.+...  .+..+++..+...+.+...  .   ...++......+..
T Consensus        47 ----~~~d~-G~~~i~~~~~~~~~~~l~~~lgl~~~~~~--~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~  114 (435)
T PLN02268         47 ----FPVDM-GASWLHGVCNENPLAPLIGRLGLPLYRTS--GDNSVLYDHDLESYALFDM--D---GNQVPQELVTKVGE  114 (435)
T ss_pred             ----cccCC-CCeeEeccCCCchHHHHHHHhCCceEecc--CCccccccccccccceecC--C---CCCCCHHHHHHHHH
Confidence                34788 5898853   3367888999998654321  1111222101010000000  0   00122221122222


Q ss_pred             HHH-HHHhhcCCCccccccccccccccCCcHHHHHHhcCCC-------hhHHHHHHHHH-Hhc-cCCchhhhhhhchhhH
Q 014883          181 FFK-LVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLP-------HKIKSIVLYAI-AMA-DYDQEVSEYVLKTRDG  250 (416)
Q Consensus       181 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~-------~~~~~~~~~~~-~~~-~~~~~~~~~~~s~~~~  250 (416)
                      .+. ........ .        ...+.+.|+.+|++++...       ...++++.+.+ .+. -+..++  .++|+...
T Consensus       115 ~~~~~~~~~~~~-~--------~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ls~~~~  183 (435)
T PLN02268        115 TFERILEETEKV-R--------DEHEEDMSLLQAISIVLERHPELRLEGLAHEVLQWYLCRMEGWFAADA--DTISLKSW  183 (435)
T ss_pred             HHHHHHHHHHHH-H--------hccCCCcCHHHHHHHHhhhCcccccchHHHHHHHHHHHHHHHHhCCCh--HhCchhhc
Confidence            111 11111000 0        1124567899987654211       12333332211 111 122232  23443210


Q ss_pred             HHHHHHHHhhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEE
Q 014883          251 INRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKL  330 (416)
Q Consensus       251 ~~~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~V  330 (416)
                              .....+.   |...++.+|++.|+++|++     +..|++|++|++|..+  ++. +.|++.+|+++.||+|
T Consensus       184 --------~~~~~~~---g~~~~~~~G~~~l~~~l~~-----~~~i~~~~~V~~i~~~--~~~-v~v~~~~g~~~~ad~V  244 (435)
T PLN02268        184 --------DQEELLE---GGHGLMVRGYDPVINTLAK-----GLDIRLNHRVTKIVRR--YNG-VKVTVEDGTTFVADAA  244 (435)
T ss_pred             --------CCccccC---CCceeecCCHHHHHHHHhc-----cCceeCCCeeEEEEEc--CCc-EEEEECCCcEEEcCEE
Confidence                    0000011   1124678899999998854     5579999999999986  333 5677788889999999


Q ss_pred             EEC-CCCCCCCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCCCCCC
Q 014883          331 VLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD  379 (416)
Q Consensus       331 I~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~~~~  379 (416)
                      |+. |...+....+.+.|+||+.+....++..++.+.|.++.|++||-++
T Consensus       245 Iva~P~~~l~~~~i~f~p~lp~~~~~ai~~~~~g~~~Kv~l~f~~~fw~~  294 (435)
T PLN02268        245 IIAVPLGVLKANIIKFEPELPEWKEEAISDLGVGIENKIALHFDSVFWPN  294 (435)
T ss_pred             EEecCHHHHhcCcceecCCCCHHHHHHHHhCCccceeEEEEEeCCCCCCC
Confidence            954 6555444334577889988888878888999999999999996543

>PLN02676 polyamine oxidase

Probab=99.91  E-value=3.8e-23  Score=207.97  Aligned_cols=285  Identities=11%  Similarity=0.074  Sum_probs=169.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCC-eEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCcccccccccccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~-~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (416)
                      ...+||||||||++||+||+.|+++|. +|+|||+++++||++.+.+..|                              
T Consensus        24 ~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g------------------------------   73 (487)
T PLN02676         24 KPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAG------------------------------   73 (487)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCC------------------------------
Confidence            346899999999999999999999998 6999999999999999875432                              


Q ss_pred             ccccCCCCceEeeCCCCeEEee-----CchHHHHHHhcCcccccc-cccccceeeeccCCceeecCCChhhhhhcCCCCh
Q 014883           99 RLLSQHPRNFNLDVSGPRVLFC-----ADHAVDLMLKSGASHYLE-FKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGL  172 (416)
Q Consensus        99 ~~~~~~~~~~~~dl~Gp~~~~~-----~~~~~~~l~~~g~~~~~~-f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~  172 (416)
                               +.+|+ |++|+..     ...+.+++.+.|+..+.. +... ...++..+|+.+  +.   +..      .
T Consensus        74 ---------~~~d~-g~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~-~~~~~~~~g~~~--~~---~~~------~  131 (487)
T PLN02676         74 ---------VSVEL-GANWVEGVGGPESNPIWELANKLKLRTFYSDFDNL-SSNIYKQDGGLY--PK---KVV------Q  131 (487)
T ss_pred             ---------eEEec-CCEEEEcccCcccChHHHHHHhcCCceeecCcccc-ceeEECCCCCCC--CH---HHH------H
Confidence                     34677 4788742     446778888888876532 2221 222333345433  11   100      0


Q ss_pred             HHHHHHHHHHHHHHhhcCCCccccccccccccccCCcH--HHHHHhcC-CChhHHHHHHHHHHhccCCchhhhhhhchhh
Q 014883          173 MEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPF--AEFLTKMK-LPHKIKSIVLYAIAMADYDQEVSEYVLKTRD  249 (416)
Q Consensus       173 ~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~--~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  249 (416)
                      .-...+..+..++..+....   .     ..++.+.++  .+++.+.. .....+. ..+......+..++  .++|+..
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~---~-----~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~S~~~  200 (487)
T PLN02676        132 KSMKVADASDEFGENLSISL---S-----AKKAVDISILTAQRLFGQVPKTPLEMV-IDYYNYDYEFAEPP--RVTSLKN  200 (487)
T ss_pred             HHHHHHHHHHHHHHHHHHhh---c-----ccCCCCccHHHHHHHHhhCCCCHHHHH-HHHHhccceeccCc--cccchhh
Confidence            00011111122211121100   0     112344555  33444322 1211111 11111111012221  2344322


Q ss_pred             HHHHHHHHHhhhccccCCCccEEee--cCCcchHHHHHHHHHHh------cCcEEEcCCceeEEEEecCCCcEEEEEeCC
Q 014883          250 GINRLALYNSSIGRFQNALGALIYP--IYGQGELPQAFCRRAAV------KGCLYVLRMPVISLLTDQNSGSYKGVRLAS  321 (416)
Q Consensus       250 ~~~~~~~~~~s~~~~g~~~~~~~~p--~gG~~~l~~al~r~~~~------~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~  321 (416)
                      .       .. ...+...++.-.+.  +||++.|+++|++.+..      .+.+|+||++|++|..+. ++  +.|++.+
T Consensus       201 ~-------~~-~~~~~~~g~~~~~~~~~~G~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~-~g--V~V~~~~  269 (487)
T PLN02676        201 T-------EP-NPTFVDFGEDEYFVADPRGYESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSK-NG--VTVKTED  269 (487)
T ss_pred             c-------Cc-ccccccCCCceEEeecCCCHHHHHHHHHhhcccccccccCCCceecCCEeeEEEEcC-Cc--EEEEECC
Confidence            1       10 01111111112343  68999999999875422      236899999999999862 44  5788889


Q ss_pred             CcEEEcCEEEEC-CCCCCCCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCCCCC
Q 014883          322 GQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP  378 (416)
Q Consensus       322 G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~~~  378 (416)
                      |++++||+||++ |...+.+..+.++|+||+.+....++..++.+.|.++.|++||=+
T Consensus       270 G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP~~k~~ai~~l~~g~~~Kv~l~f~~~FW~  327 (487)
T PLN02676        270 GSVYRAKYVIVSVSLGVLQSDLIKFKPPLPDWKIEAIYQFDMAVYTKIFLKFPYKFWP  327 (487)
T ss_pred             CCEEEeCEEEEccChHHhccCceEEeCCCCHHHHHHHHhCCceeeEEEEEEeCCCCCC
Confidence            999999999954 555545423578999999988888888999999999999999744

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=99.91  E-value=1.6e-22  Score=203.20  Aligned_cols=301  Identities=17%  Similarity=0.154  Sum_probs=184.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCccccccccccccccccC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ  103 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (416)
                      +|+|||||++||+||..|+++|++|+|+|+++++||+++++...                                    
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~------------------------------------   44 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDG------------------------------------   44 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecC------------------------------------
Confidence            58999999999999999999999999999999999999997421                                    


Q ss_pred             CCCceEeeCCCCeEEeeCc-hHHHHHHhcCcccccccccccceeeeccCCceee--------cC-CChhhhhhcCCCChH
Q 014883          104 HPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCS--------VP-DSRAAIFKDKSLGLM  173 (416)
Q Consensus       104 ~~~~~~~dl~Gp~~~~~~~-~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~--------~p-~~~~~~~~~~~l~~~  173 (416)
                        .+|.+|. |+++++... .+.+++.++|+.+.+.+......+.. .+++...        .| .....+++.+.++..
T Consensus        45 --~g~~~d~-G~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~P~~~~~~~l~~~~ls~~  120 (474)
T TIGR02732        45 --DGNHIEM-GLHVFFGCYANLFRLMKKVGAEDNLLLKEHTHTFVN-KGGDIGELDFRFATGAPFNGLKAFFTTSQLKWV  120 (474)
T ss_pred             --CCceEee-ceEEecCchHHHHHHHHHcCCccccccccceeEEEc-CCCcccccccCCCCCCchhhhHHHhcCCCCCHH
Confidence              1345777 588875443 67888888998766554432222322 1333211        23 122356666778888


Q ss_pred             HHHHHHHHHHH---HHhhcCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHHhccCCchhhhhhhchhhH
Q 014883          174 EKNQLMRFFKL---VQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDG  250 (416)
Q Consensus       174 ~k~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  250 (416)
                      +|.++......   .+.+..  .  ....+......+.|+.+|+++++.++.+.+.+...+....+..++  +++|+..+
T Consensus       121 dklr~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~Pll~~~~~~~~--~~~Sa~~~  194 (474)
T TIGR02732       121 DKLRNALALGTSPIVRGLVD--Y--DGAMKTIRDLDKISFAEWFLSHGGSLGSIKRMWDPIAYALGFIDC--ENISARCM  194 (474)
T ss_pred             HHHHHHHHhhhhHHHhhccc--c--chhhhhhhhhccccHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCH--HHHHHHHH
Confidence            87765443311   111100  0  000011223456999999999998876444333332222223333  35777666


Q ss_pred             HHHHHHHHhhhccccCCCccEEeecCCcch-HHHHHHHHHHhcCcEEEcCCceeEEEEecC-CC--cEEEEEeCCC---c
Q 014883          251 INRLALYNSSIGRFQNALGALIYPIYGQGE-LPQAFCRRAAVKGCLYVLRMPVISLLTDQN-SG--SYKGVRLASG---Q  323 (416)
Q Consensus       251 ~~~~~~~~~s~~~~g~~~~~~~~p~gG~~~-l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~-~g--~~~gV~l~~G---~  323 (416)
                      +..+..+.  ....+   .-..+++||.++ +.+.+.+.+++.|++|+++++|++|+.+.. ++  ++++|++.+|   +
T Consensus       195 ~~~~~~~~--~~~~~---s~~~~~~g~~~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~  269 (474)
T TIGR02732       195 LTIFMLFA--AKTEA---SKLRMLKGSPDKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKK  269 (474)
T ss_pred             HHHHHHHH--hCCCc---ceeeeecCCcchhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcce
Confidence            55444222  12322   126788999876 678799999999999999999999998621 12  3677777544   5


Q ss_pred             EEEcCEEEEC-CCCCCCCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCCCC
Q 014883          324 DILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK  377 (416)
Q Consensus       324 ~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~~  377 (416)
                      ++.||+||++ |.....+|..+. .+-+.....+.+ .....++-..+-|++|+.
T Consensus       270 ~~~aD~VVlA~p~~~~~~Ll~~~-~~~~~~~~~l~~-l~~~pi~~v~l~~~~~v~  322 (474)
T TIGR02732       270 VIKADAYVAACDVPGIKRLLPQE-WRQFEEFDNIYK-LDAVPVATVQLRYDGWVT  322 (474)
T ss_pred             EEECCEEEECCChHHHHhhCChh-hhcCHHHhhHhc-CCCCCeEEEEEEeccccc
Confidence            6899999954 544445553211 110112222322 233456666667787664

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PLN02487 zeta-carotene desaturase

Probab=99.91  E-value=2.7e-22  Score=203.40  Aligned_cols=304  Identities=16%  Similarity=0.167  Sum_probs=184.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCcccccccccccccc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (416)
                      ...+|+|||+|++||++|..|+++|++|+|+|+++++||+++++...                                 
T Consensus        74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~---------------------------------  120 (569)
T PLN02487         74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDK---------------------------------  120 (569)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeec---------------------------------
Confidence            34699999999999999999999999999999999999999988421                                 


Q ss_pred             ccCCCCceEeeCCCCeEEeeC-chHHHHHHhcCcccccccccccceeeeccCCcee----ecC--CC---hhhhhhcCCC
Q 014883          101 LSQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLC----SVP--DS---RAAIFKDKSL  170 (416)
Q Consensus       101 ~~~~~~~~~~dl~Gp~~~~~~-~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~----~~p--~~---~~~~~~~~~l  170 (416)
                           .++.+|. |+++++.. ..+.+++.++|+.+.+.+......+.. .+|...    .+|  ..   ...+++.+.+
T Consensus       121 -----~g~~~e~-G~h~~~~~~~~~~~ll~~LGl~~~~~~~~~~~~~~~-~~g~~~~~~~~~p~~~pl~~~~~~l~~~~L  193 (569)
T PLN02487        121 -----NGNHIEM-GLHVFFGCYNNLFRLMKKVGADENLLVKDHTHTFVN-KGGDVGELDFRFPVGAPLHGIKAFLTTNQL  193 (569)
T ss_pred             -----CCcEEec-ceeEecCCcHHHHHHHHhcCCcccccccccceeEEe-cCCEEeeeccCCCCCchhhhHHHHHcCCCC
Confidence                 1244676 48877543 368889999999776555432222322 244431    122  11   1244555677


Q ss_pred             ChHHHHHHHHHH---HHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHHhccCCchhhhhhhch
Q 014883          171 GLMEKNQLMRFF---KLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKT  247 (416)
Q Consensus       171 ~~~~k~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  247 (416)
                      ++.+|.++..-+   ..+....  .++  ...+......+.|+.+|+++++.++.+.+-++..++...+..++  +++|+
T Consensus       194 s~~dklr~~~~l~~~~~~~al~--~~~--~~~~~~~~~d~~sv~~~l~r~~g~~~~~~~l~dPll~~~~~~~~--d~~SA  267 (569)
T PLN02487        194 EPYDKARNALALATSPVVRALV--DPD--GAMRDIRDLDDISFSDWFTSHGGTRMSIKRMWDPIAYALGFIDC--DNISA  267 (569)
T ss_pred             CHHHHHhhcccccccchhhhcc--Ccc--ccccccccccCCcHHHHHHHhCCCHHHHHHHHHHHHHHhhCCCH--HHHHH
Confidence            777776642211   0011100  000  00111233456999999999988875444333333332233333  46777


Q ss_pred             hhHHHHHHHHHhhhccccCCCccEEeecCCcch-HHHHHHHHHHhcCcEEEcCCceeEEEEecC-CC--cEEEEEe---C
Q 014883          248 RDGINRLALYNSSIGRFQNALGALIYPIYGQGE-LPQAFCRRAAVKGCLYVLRMPVISLLTDQN-SG--SYKGVRL---A  320 (416)
Q Consensus       248 ~~~~~~~~~~~~s~~~~g~~~~~~~~p~gG~~~-l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~-~g--~~~gV~l---~  320 (416)
                      ..++..+..+.  ...-+   +-..|++||.++ |++.+++.++..|++|+++++|++|..+.+ ++  ++++|++   .
T Consensus       268 ~~~~~vl~~~~--~~~~~---~~l~~~~Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~  342 (569)
T PLN02487        268 RCMLTIFSLFA--TKTEA---SLLRMLKGSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKAT  342 (569)
T ss_pred             HHHHHHHHHHh--hcCCc---ceeeecCCCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCC
Confidence            76655543211  11111   226799999995 999999999999999999999999998721 22  3778887   3


Q ss_pred             CCcEEEcCEEEEC-CCCCCCCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCCCC
Q 014883          321 SGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK  377 (416)
Q Consensus       321 ~G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~~  377 (416)
                      +++++.||.||++ |...+.+|.....+..+. ..++... ...-|+-+.+-|++|+.
T Consensus       343 ~~~~~~aD~VV~A~p~~~~~~Llp~~~~~~~~-~~~l~~L-~~~pi~tv~L~~d~~v~  398 (569)
T PLN02487        343 EKEIVKADAYVAACDVPGIKRLLPEQWREYEF-FDNIYKL-VGVPVVTVQLRYNGWVT  398 (569)
T ss_pred             CceEEECCEEEECCCHHHHHHhCCchhhccHH-HhHHhcC-CCeeEEEEEEEeccccc
Confidence            4557899999954 444445554222111111 2223221 12334444556787664

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=99.91  E-value=8.1e-24  Score=201.42  Aligned_cols=288  Identities=14%  Similarity=0.078  Sum_probs=165.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCccccccccccccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (416)
                      +...||||||+|++||+||+.|.++||+|+|||+++|+|||+.+... + ..|.                          
T Consensus         5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~-~-~~~~--------------------------   56 (450)
T COG1231           5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARA-G-GEYT--------------------------   56 (450)
T ss_pred             CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEec-c-ceee--------------------------
Confidence            56789999999999999999999999999999999999999999875 2 2332                          


Q ss_pred             cccCCCCceEeeCCCCeEEeeCchHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhhcCCCChHHHHH-H
Q 014883          100 LLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQ-L  178 (416)
Q Consensus       100 ~~~~~~~~~~~dl~Gp~~~~~~~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~-l  178 (416)
                                 |++|+-+.+.++.+..+..+.|+....-....+....+  .+.....|.    ++.   -.+.+.+. .
T Consensus        57 -----------d~gG~~i~p~~~~~l~~~k~~gv~~~~fi~~g~~~~~~--~~~~~~~p~----~~~---~~~~d~~~~~  116 (450)
T COG1231          57 -----------DLGGQYINPTHDALLAYAKEFGVPLEPFIRDGDNVIGY--VGSSKSTPK----RSL---TAAADVRGLV  116 (450)
T ss_pred             -----------ccCCcccCccchhhhhhHHhcCCCCCceeccCcccccc--cccccccch----hcc---chhhhhcchh
Confidence                       33232222456677777777776543222211110000  111111111    110   00112222 1


Q ss_pred             HHHHHHHHhhcCCCccccccccccccccCCcHHHH----HHhcCCChhHHHHHHHHHHhccCCchhhhhhhchhhHHHHH
Q 014883          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEF----LTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRL  254 (416)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~  254 (416)
                      ..+...........+...   ....+.+.+++.+|    ++.+......+  +      .....++  .+++....+.. 
T Consensus       117 ~~~~~~a~~~~~~~~~~t---~~~~e~~~~~~~~W~~~~~~~~~~~~~a~--~------~~g~~~~--~~~~~~~d~~~-  182 (450)
T COG1231         117 AELEAKARSAGELDPGLT---PEDRELDLESLAAWKTSSLRGLSRDPGAR--V------SPGPIEP--GDVSLLHDALP-  182 (450)
T ss_pred             hhhhhhhhcccccCcccC---cchhhhhhHHHHhhhhccccccccCccce--e------ccCCCCc--ccccchhhhhh-
Confidence            112221111111111110   11234555777787    22221111111  0      0011111  11111110110 


Q ss_pred             HHHHhhhcccc--CCCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 014883          255 ALYNSSIGRFQ--NALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (416)
Q Consensus       255 ~~~~~s~~~~g--~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~  332 (416)
                      ......+.+.-  ....+...+.|||+.|+++|+   .++|..|.++++|.+|.++. +|  |.|+..+.+++.||.||+
T Consensus       183 ~~~~~~~~~~~~~e~~~~~~~~~GGmd~la~Afa---~ql~~~I~~~~~V~rI~q~~-~g--V~Vt~~~~~~~~ad~~i~  256 (450)
T COG1231         183 LRSASVVDRGIGGEIRTQMLQRLGGMDQLAEAFA---KQLGTRILLNEPVRRIDQDG-DG--VTVTADDVGQYVADYVLV  256 (450)
T ss_pred             hhhhhhccccccccccchhhccCccHHHHHHHHH---HHhhceEEecCceeeEEEcC-Ce--EEEEeCCcceEEecEEEE
Confidence            11111111111  111224466699999999996   47899999999999999972 44  678766657899999996


Q ss_pred             C-CCCCCCCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCCCC
Q 014883          333 D-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK  377 (416)
Q Consensus       333 ~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~~  377 (416)
                      . |..++..  +.+.|++++.+.+.....+++...|..+.|++||=
T Consensus       257 tiPl~~l~q--I~f~P~l~~~~~~a~~~~~y~~~~K~~v~f~rpFW  300 (450)
T COG1231         257 TIPLAILGQ--IDFAPLLPAEYKQAAKGVPYGSATKIGVAFSRPFW  300 (450)
T ss_pred             ecCHHHHhh--cccCCCCCHHHHHHhcCcCcchheeeeeecCchhh
Confidence            5 5555455  46788899999999999999999999999999984

>PLN02529 lysine-specific histone demethylase 1

Probab=99.91  E-value=1.1e-22  Score=210.15  Aligned_cols=280  Identities=14%  Similarity=0.104  Sum_probs=173.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCcccccccccccccc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (416)
                      ...||+|||||++||+||..|+++|++|+|||+++++||+++|..+.+                                
T Consensus       159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~--------------------------------  206 (738)
T PLN02529        159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGR--------------------------------  206 (738)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccC--------------------------------
Confidence            457999999999999999999999999999999999999999986531                                


Q ss_pred             ccCCCCceEeeCCCCeEEeeCc--hHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhhcCCCChHHHHHH
Q 014883          101 LSQHPRNFNLDVSGPRVLFCAD--HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (416)
Q Consensus       101 ~~~~~~~~~~dl~Gp~~~~~~~--~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l  178 (416)
                         ....+.+|+ |++|++...  ++..+..++|+..+.. ..  ...++..+|.......+  +        ..+ ..+
T Consensus       207 ---~g~~~~~Dl-Gaswi~g~~~npl~~la~~lgl~~~~~-~~--~~~~~~~~G~~v~~~~~--~--------~~~-~~~  268 (738)
T PLN02529        207 ---KGQFAAVDL-GGSVITGIHANPLGVLARQLSIPLHKV-RD--NCPLYKPDGALVDKEID--S--------NIE-FIF  268 (738)
T ss_pred             ---CCCceEEec-CCeeccccccchHHHHHHHhCCCcccc-CC--CceEEeCCCcCcchhhh--h--------hHH-HHH
Confidence               001245888 589985432  4667777777654321 11  11133335543321110  0        000 011


Q ss_pred             HHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcC------CChhHHHHHHHHHHhccCCchhhhhhhchhhHHH
Q 014883          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMK------LPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGIN  252 (416)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  252 (416)
                      .+++..+..+....         ...+.+.|+.+|++++.      +++..++++.+.+....+....   .++.    .
T Consensus       269 ~~~l~~~~~l~~~~---------~~~~~d~Sl~~~le~~~~~~~~~~t~~e~~ll~~~~~~le~a~~~---~~s~----L  332 (738)
T PLN02529        269 NKLLDKVTELRQIM---------GGFANDISLGSVLERLRQLYGVARSTEERQLLDWHLANLEYANAG---CLSD----L  332 (738)
T ss_pred             HHHHHHHHHHHHhc---------ccCccCCCHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhceecCC---ChHH----h
Confidence            22222221111100         01245789999998643      5555566665433211111100   1111    1


Q ss_pred             HHHHHHhhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 014883          253 RLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (416)
Q Consensus       253 ~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~  332 (416)
                      .+..+....+ +. ..|...++.||++.|+++|++     +..|+||++|++|..+. ++  +.|+ .+++++.||+||+
T Consensus       333 Sl~~~~~~~~-~e-~~G~~~~i~GG~~~Li~aLA~-----~L~IrLnt~V~~I~~~~-dG--VtV~-t~~~~~~AD~VIV  401 (738)
T PLN02529        333 SAAYWDQDDP-YE-MGGDHCFLAGGNWRLINALCE-----GVPIFYGKTVDTIKYGN-DG--VEVI-AGSQVFQADMVLC  401 (738)
T ss_pred             hhhHhhhccc-cc-cCCceEEECCcHHHHHHHHHh-----cCCEEcCCceeEEEEcC-Ce--EEEE-ECCEEEEcCEEEE
Confidence            1122221111 11 113367899999999999875     33599999999999862 33  4565 4567899999996


Q ss_pred             C-CCCCCCCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCCCC
Q 014883          333 D-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK  377 (416)
Q Consensus       333 ~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~~  377 (416)
                      + |...+.+..+.+.|+||+.+.+..++..++.+.|+++.|++||-
T Consensus       402 TVPlgVLk~~~I~F~PpLP~~K~~AI~rL~yG~v~KV~L~F~~~FW  447 (738)
T PLN02529        402 TVPLGVLKKRTIRFEPELPRRKLAAIDRLGFGLLNKVAMVFPSVFW  447 (738)
T ss_pred             CCCHHHHHhccccCCCCCCHHHHHHHHcCCCceeEEEEEEeCCccc
Confidence            5 55554543456889999988888889999999999999999963

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=99.91  E-value=2.3e-22  Score=195.90  Aligned_cols=283  Identities=16%  Similarity=0.194  Sum_probs=178.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCC--CeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCccccccccccccccc
Q 014883           24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL  101 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G--~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (416)
                      .|+|||||++||+||++|+++|  .+|+|||+.+++||...|+..+|                                 
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G---------------------------------   48 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDG---------------------------------   48 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCC---------------------------------
Confidence            5899999999999999999999  99999999999999999996654                                 


Q ss_pred             cCCCCceEeeCCCCeEEeeC-chHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhhcCCCChHHHHHHHH
Q 014883          102 SQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMR  180 (416)
Q Consensus       102 ~~~~~~~~~dl~Gp~~~~~~-~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l~~  180 (416)
                            |.+|. ||+.++.+ ..+++++.++|+++.+.+......|++. +|+++++|...  ++..+.+...+...+.+
T Consensus        49 ------~~~e~-G~~~f~~~~~~~l~li~eLGled~l~~~~~~~~~i~~-~gkl~p~P~~~--i~~ip~~~~~~~~~~~~  118 (444)
T COG1232          49 ------FLFER-GPHHFLARKEEILDLIKELGLEDKLLWNSTARKYIYY-DGKLHPIPTPT--ILGIPLLLLSSEAGLAR  118 (444)
T ss_pred             ------EEEee-chhheecchHHHHHHHHHhCcHHhhccCCcccceEee-CCcEEECCccc--eeecCCccccchhHHHH
Confidence                  45777 47766554 5789999999999998887655556665 88999999763  44333322212222223


Q ss_pred             HHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHHhccCCchhhhhhhchhhHHHHHHHHHhh
Q 014883          181 FFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS  260 (416)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~s  260 (416)
                      ++.......   .        .....+.++.+|+++..-.+.+..++. .+.-.-|..+.  +++|+...+..+..-.+.
T Consensus       119 ~~~~~~~~~---~--------~~~~~d~sv~~f~r~~fG~ev~~~~~~-pll~giy~~~~--~~LS~~~~~p~~~~~e~~  184 (444)
T COG1232         119 ALQEFIRPK---S--------WEPKQDISVGEFIRRRFGEEVVERFIE-PLLEGIYAGDA--DKLSAAAAFPILARAERK  184 (444)
T ss_pred             HHHhhhccc---C--------CCCCCCcCHHHHHHHHHhHHHHHHHHH-HHhhchhcCCH--HHhhHHHhcchhhhhhhh
Confidence            222111100   0        123467899999986433322333332 11111122222  356765222211111111


Q ss_pred             hccc-------cC-----CCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcC
Q 014883          261 IGRF-------QN-----ALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSH  328 (416)
Q Consensus       261 ~~~~-------g~-----~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad  328 (416)
                      .+..       +.     ..+.+.+++||+++|+++|++.+...   |+++++|++|..+. ++  +++.+.+|+.+.||
T Consensus       185 ~~s~~~g~~~~~~~~~~~~~~~~~~~~gG~~~l~~al~~~l~~~---i~~~~~V~~i~~~~-~~--~~~~~~~g~~~~~D  258 (444)
T COG1232         185 YGSLLRGAKKEGLPKQSLKKEKFGYLRGGLQSLIEALAEKLEAK---IRTGTEVTKIDKKG-AG--KTIVDVGGEKITAD  258 (444)
T ss_pred             hcchhhhhhhccCcccccccccccccCccHHHHHHHHHHHhhhc---eeecceeeEEEEcC-Cc--cEEEEcCCceEEcc
Confidence            1110       00     01347889999999999998766554   99999999999861 33  45556789999999


Q ss_pred             EEEEC-CCCCCCCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCC
Q 014883          329 KLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSS  375 (416)
Q Consensus       329 ~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p  375 (416)
                      .||++ |.+.++.++.+  .++.   . ........+++.+++.++++
T Consensus       259 ~VI~t~p~~~l~~ll~~--~~~~---~-~~~~~~~~s~~~vv~~~~~~  300 (444)
T COG1232         259 GVISTAPLPELARLLGD--EAVS---K-AAKELQYTSVVTVVVGLDEK  300 (444)
T ss_pred             eEEEcCCHHHHHHHcCC--cchh---h-hhhhccccceEEEEEEeccc
Confidence            99954 65555655432  1111   1 11223456788888888885

>PLN02568 polyamine oxidase

Probab=99.88  E-value=3.3e-21  Score=195.39  Aligned_cols=298  Identities=9%  Similarity=0.042  Sum_probs=168.0

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCC-----CeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCccccccc
Q 014883           19 EPTAFDLIVIGTGLPESVISAAASASG-----KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEI   93 (416)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G-----~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (416)
                      ++...||||||||++||+||+.|+++|     ++|+|||+++++||+++|++..+                         
T Consensus         2 ~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~~~g-------------------------   56 (539)
T PLN02568          2 VAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSEFGG-------------------------   56 (539)
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEEeCC-------------------------
Confidence            456689999999999999999999988     99999999999999999986532                         


Q ss_pred             cccccccccCCCCceEeeCCCCeEEee--CchHHHHHHhcCccccc-ccccccc----eeeeccCCceeecCCChhhhhh
Q 014883           94 SNYASRLLSQHPRNFNLDVSGPRVLFC--ADHAVDLMLKSGASHYL-EFKSIDA----TFMLDADAKLCSVPDSRAAIFK  166 (416)
Q Consensus        94 ~~~~~~~~~~~~~~~~~dl~Gp~~~~~--~~~~~~~l~~~g~~~~~-~f~~~~~----~~~~~~~g~~~~~p~~~~~~~~  166 (416)
                                    |.+|+ |++++..  ...+.+++.++|+.... .|...+.    ...+..+|...  +.   ++..
T Consensus        57 --------------~~~d~-G~~~~~g~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~---~~~~  116 (539)
T PLN02568         57 --------------ERIEM-GATWIHGIGGSPVYKIAQEAGSLESDEPWECMDGFPDRPKTVAEGGFEV--DP---SIVE  116 (539)
T ss_pred             --------------eEEec-CCceeCCCCCCHHHHHHHHhCCccccCcceecccccccceEEccCCcCC--CH---HHHH
Confidence                          34777 4888753  45788889999885442 2322111    11222233211  10   0000


Q ss_pred             cCCCChHHHHHHHHHHHHHHhhcCCCccc---c--ccccccc----cccCCcHHHHHHhcCCChhHHHHHHHHHHhccCC
Q 014883          167 DKSLGLMEKNQLMRFFKLVQGHLSLDESE---E--NNVRISE----EDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYD  237 (416)
Q Consensus       167 ~~~l~~~~k~~l~~~~~~~~~~~~~~~~~---~--~~~~~~~----~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~  237 (416)
                            .-...+..++..+.....+....   .  .......    .-.+.++.+|+++.. ...+..+..-. ....+.
T Consensus       117 ------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~Sl~~fl~~~l-~~~~~~~~~p~-~~~~~~  188 (539)
T PLN02568        117 ------SISTLFRGLMDDAQGKLIEPSEVDEVDFVKLAAKAARVCESGGGGSVGSFLRRGL-DAYWDSVSADE-QIKGYG  188 (539)
T ss_pred             ------HHHHHHHHHHHHhhcccccccccccccccccchhccchhccCCCCcHHHHHHHHH-HHHHhhcccch-hhcccc
Confidence                  00011122222221110000000   0  0000000    012347888887411 00000000000 000000


Q ss_pred             chhhhhhhchhhHHHHHHHHHh-----------hh---ccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCcee
Q 014883          238 QEVSEYVLKTRDGINRLALYNS-----------SI---GRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVI  303 (416)
Q Consensus       238 ~~~~~~~~s~~~~~~~~~~~~~-----------s~---~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~  303 (416)
                      .++  .+.+....+..+..+..           +.   ..+...+|...++.||++.|.++|++.+  .+..|++|++|+
T Consensus       189 ~~~--~~~~~~~~~~~~~~~e~~~~~~~~ls~ls~~~~~~~~~~~g~~~~i~gG~~~Li~~La~~L--~~~~I~ln~~V~  264 (539)
T PLN02568        189 GWS--RKLLEEAIFTMHENTQRTYTSADDLSTLDLAAESEYRMFPGEEITIAKGYLSVIEALASVL--PPGTIQLGRKVT  264 (539)
T ss_pred             chh--HHHHHHHHHHHHHHhhccccccccHhhccccccCcceecCCCeEEECCcHHHHHHHHHhhC--CCCEEEeCCeEE
Confidence            000  00111111111111100           00   1111112346789999999999997643  356899999999


Q ss_pred             EEEEecCCCcEEEEEeCCCcEEEcCEEEEC-CCCCCCCC----CCCchhhhhhhhhhccccCCcceEEEEEEEecCCC
Q 014883          304 SLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGS----LASSHQQLQESFQAFSLSDNKGKVARGICITRSSL  376 (416)
Q Consensus       304 ~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~-p~~~~~~l----~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~  376 (416)
                      +|..+  ++. +.|++.+|+++.||+||++ |...+..-    .+.+.|+||+.+....++..+|.+.|.++.|++||
T Consensus       265 ~I~~~--~~~-v~V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~P~LP~~k~~Ai~~l~~g~~~Ki~l~f~~~f  339 (539)
T PLN02568        265 RIEWQ--DEP-VKLHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFSPPLPDFKTDAISRLGFGVVNKLFVELSPRP  339 (539)
T ss_pred             EEEEe--CCe-EEEEEcCCCEEEcCEEEEcCCHHHHhhccccccceecCCCCHHHHHHHHhcCCceeeEEEEEecCCC
Confidence            99986  333 5688789989999999964 55444431    13588999998888888889999999999999996

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=99.88  E-value=5.3e-21  Score=198.61  Aligned_cols=283  Identities=13%  Similarity=0.115  Sum_probs=170.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCcccccccccccccc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (416)
                      ...||+|||||++||+||+.|++.|++|+|+|+++++||++.+++..+.                               
T Consensus       237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g~-------------------------------  285 (808)
T PLN02328        237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKGD-------------------------------  285 (808)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccccCCC-------------------------------
Confidence            3579999999999999999999999999999999999999999876531                               


Q ss_pred             ccCCCCceEeeCCCCeEEeeC--chHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhhcCCCChHHHHHH
Q 014883          101 LSQHPRNFNLDVSGPRVLFCA--DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (416)
Q Consensus       101 ~~~~~~~~~~dl~Gp~~~~~~--~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l  178 (416)
                          .-.+.+|+ |++|+...  ..+..++.++|+..+. ......  ++..+|..+....+  +        ..+ ..+
T Consensus       286 ----~~~~~~d~-Gas~i~g~~~npl~~l~~~lgl~~~~-~~~~~~--~~~~dG~~~~~~~~--~--------~v~-~~f  346 (808)
T PLN02328        286 ----GVVAAADL-GGSVLTGINGNPLGVLARQLGLPLHK-VRDICP--LYLPDGKAVDAEID--S--------KIE-ASF  346 (808)
T ss_pred             ----CcceeccC-CceeecCCCccHHHHHHHHcCCceEe-cCCCce--EEeCCCcCcchhhh--h--------hHH-HHH
Confidence                01234677 48888543  3566777888875431 111111  22235543321100  0        001 112


Q ss_pred             HHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhc------CCChhHHHHHHHHHHhccCCchhhhhhhchhhHHH
Q 014883          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKM------KLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGIN  252 (416)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  252 (416)
                      .+++..+..+....   .+    .....+.|+.+|++++      ..++..+.++.+.++..-+....   .++.   + 
T Consensus       347 ~~lL~~~~klr~~~---~~----~~~~~D~SLg~~le~~~~~~~~~~~~~e~~Ll~w~lanlE~~~gs---~ls~---L-  412 (808)
T PLN02328        347 NKLLDRVCKLRQAM---IE----EVKSVDVNLGTALEAFRHVYKVAEDPQERMLLNWHLANLEYANAS---LMSN---L-  412 (808)
T ss_pred             HHHHHHHHHHHHhh---hh----cccccCcCHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHhccchh---hHHH---H-
Confidence            23333221111000   00    0112457888888743      23444444444332211111100   0110   1 


Q ss_pred             HHHHHHhhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 014883          253 RLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (416)
Q Consensus       253 ~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~  332 (416)
                      .+..+.... .+ ...+...++.||++.|+++|++.   ++  |++|++|++|..+. ++  +.|. .+|+++.||+||+
T Consensus       413 Sl~~w~qd~-~~-e~~G~~~~v~GG~~~Li~aLa~~---L~--I~ln~~V~~I~~~~-dg--V~V~-~~G~~~~AD~VIv  481 (808)
T PLN02328        413 SMAYWDQDD-PY-EMGGDHCFIPGGNDTFVRELAKD---LP--IFYERTVESIRYGV-DG--VIVY-AGGQEFHGDMVLC  481 (808)
T ss_pred             Hhhhhhccc-cc-cCCCeEEEECCcHHHHHHHHHhh---CC--cccCCeeEEEEEcC-Ce--EEEE-eCCeEEEcCEEEE
Confidence            111111100 11 11133667899999999999763   33  99999999999862 33  4453 5788999999996


Q ss_pred             C-CCCCCCCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCCCCC
Q 014883          333 D-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP  378 (416)
Q Consensus       333 ~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~~~  378 (416)
                      + |...+.+..+.+.|+||+.+....++..++.+.|+++.|+++|=.
T Consensus       482 TvPl~vLk~~~I~F~P~LP~~K~~AI~~l~yG~~~KV~L~F~~~FW~  528 (808)
T PLN02328        482 TVPLGVLKKGSIEFYPELPQRKKDAIQRLGYGLLNKVALLFPYNFWG  528 (808)
T ss_pred             CCCHHHHhhcccccCCCCCHHHHHHHHcCCCcceEEEEEEeCCcccc
Confidence            5 655555433567899999888888888999999999999999643

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=99.88  E-value=6.6e-21  Score=189.50  Aligned_cols=277  Identities=16%  Similarity=0.155  Sum_probs=172.5

Q ss_pred             HHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCccccccccccccccccCCCCceEeeCCCC
Q 014883           36 VISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGP  115 (416)
Q Consensus        36 ~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~Gp  115 (416)
                      +||++|+++|++|+|||+++++||+++|++.++.                                     .+.+|. |+
T Consensus         1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g~-------------------------------------~~~~d~-G~   42 (419)
T TIGR03467         1 SAAVELARAGARVTLFEARPRLGGRARSFEDGGL-------------------------------------GQTIDN-GQ   42 (419)
T ss_pred             ChHHHHHhCCCceEEEecCCCCCCceeEeecCCC-------------------------------------Ccceec-CC
Confidence            4899999999999999999999999999876541                                     123677 48


Q ss_pred             eEEeeC-chHHHHHHhcCcccccccccccceeeeccCCce--e-----ecCCC-hhhhhhcCCCChHHHHHHHHHHHHHH
Q 014883          116 RVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKL--C-----SVPDS-RAAIFKDKSLGLMEKNQLMRFFKLVQ  186 (416)
Q Consensus       116 ~~~~~~-~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~--~-----~~p~~-~~~~~~~~~l~~~~k~~l~~~~~~~~  186 (416)
                      ++++.. ..+.+++.++|++....+.. ....++..++..  +     +.|.. ...+.+.+.+++.++.++.+++..+.
T Consensus        43 ~~~~~~~~~~~~l~~~lgl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  121 (419)
T TIGR03467        43 HVLLGAYTNLLALLRRIGAEPRLQGPR-LPLPFYDPGGRLSRLRLSRLPAPLHLARGLLRAPGLSWADKLALARALLALR  121 (419)
T ss_pred             EEEEcccHHHHHHHHHhCCchhhhccc-CCcceecCCCCceeecCCCCCCCHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence            887653 46788899999987765421 121222223332  1     11211 11223445677777777666554332


Q ss_pred             hhcCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHHhccCCchhhhhhhchhhHHHHHHHHHhhhccccC
Q 014883          187 GHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQN  266 (416)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~s~~~~g~  266 (416)
                      ...            ..++.+.|+.+|+++++.++.+.+.+...+....+..++  .++|+..++..+..   ++.....
T Consensus       122 ~~~------------~~~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~--~~~s~~~~~~~~~~---~~~~~~~  184 (419)
T TIGR03467       122 RTR------------FRALDDTTVGDWLQAAGQSERLIERLWEPLLLSALNTPP--ERASAALAAKVLRD---SFLAGRA  184 (419)
T ss_pred             hcC------------ccccCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHHH---HHhcCCC
Confidence            210            123567899999999888877776444322222233333  35676554433321   1111111


Q ss_pred             CCccEEeecCCcchHH-HHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC-CCCCCCCCCCC
Q 014883          267 ALGALIYPIYGQGELP-QAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLAS  344 (416)
Q Consensus       267 ~~~~~~~p~gG~~~l~-~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~-p~~~~~~l~~~  344 (416)
                       ...+.||+||++++. ++|++.+++.|++|++|++|++|..+  ++++..+...+|+++.||+||++ |...+..++..
T Consensus       185 -~~~~~~~~gG~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~--~~~~~~~~~~~g~~~~~d~vi~a~p~~~~~~ll~~  261 (419)
T TIGR03467       185 -ASDLLLPRVPLSELFPEPARRWLDSRGGEVRLGTRVRSIEAN--AGGIRALVLSGGETLPADAVVLAVPPRHAASLLPG  261 (419)
T ss_pred             -cceeeeeCCCHHHHHHHHHHHHHHHcCCEEEcCCeeeEEEEc--CCcceEEEecCCccccCCEEEEcCCHHHHHHhCCC
Confidence             112789999988776 55888888889999999999999987  44432222247888999999964 54444554321


Q ss_pred             chhhhhhhhhhccccCCcceEEEEEEEecCCCC
Q 014883          345 SHQQLQESFQAFSLSDNKGKVARGICITRSSLK  377 (416)
Q Consensus       345 ~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~~  377 (416)
                        +..   .. ..+...++.+.+..+.+++|+.
T Consensus       262 --~~~---~~-~l~~~~~~~~~~v~l~~~~~~~  288 (419)
T TIGR03467       262 --EDL---GA-LLTALGYSPITTVHLRLDRAVR  288 (419)
T ss_pred             --chH---HH-HHhhcCCcceEEEEEEeCCCcC
Confidence              111   12 2234467788899999999983

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>PLN03000 amine oxidase

Probab=99.87  E-value=1.9e-20  Score=194.45  Aligned_cols=281  Identities=13%  Similarity=0.093  Sum_probs=164.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCcccccccccccccc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (416)
                      ...||||||||++||+||..|++.|++|+|+|+++++||++.|.++.+.                               
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g~-------------------------------  231 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEAN-------------------------------  231 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceecccCC-------------------------------
Confidence            4579999999999999999999999999999999999999999876430                               


Q ss_pred             ccCCCCceEeeCCCCeEEeeCc--hHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhhcCCCChHHHHHH
Q 014883          101 LSQHPRNFNLDVSGPRVLFCAD--HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (416)
Q Consensus       101 ~~~~~~~~~~dl~Gp~~~~~~~--~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l  178 (416)
                          ...+.+|+ |++|+....  .+..++.++|+..+ ......+.|  ..+|+..  +.+....         ....+
T Consensus       232 ----~~~~~~Dl-Gas~i~g~~~npl~~L~~qlgl~l~-~~~~~~~ly--~~~Gk~v--~~~~~~~---------ve~~f  292 (881)
T PLN03000        232 ----RVGAAADL-GGSVLTGTLGNPLGIIARQLGSSLY-KVRDKCPLY--RVDGKPV--DPDVDLK---------VEVAF  292 (881)
T ss_pred             ----CCceEeec-CCeEEeCCCccHHHHHHHHcCCcee-ecCCCCeEE--EeCCcCC--chhhhhh---------HHHHH
Confidence                12356888 489885543  46666778887643 222222222  2356543  2110000         00111


Q ss_pred             HHHHHHHHhhcCCCccccccccccccccCCcHHHHHHh------cCCChhHHHHHHHHHHhccCCchhhhhhhchhhHHH
Q 014883          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTK------MKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGIN  252 (416)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  252 (416)
                      ..++..+..+.....         ....+.++.++++.      ....+..+.++.+.+....+....   .++.   +.
T Consensus       293 n~lLd~~~~lr~l~~---------~~~~D~SLg~aLe~~~~~~g~~~t~e~~~Ll~w~lanLE~~~as---~ls~---LS  357 (881)
T PLN03000        293 NQLLDKASKLRQLMG---------DVSMDVSLGAALETFRQVSGNDVATEEMGLFNWHLANLEYANAG---LVSK---LS  357 (881)
T ss_pred             HHHHHHHHHHHHHhc---------ccCcCCcHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHhccccc---CHHH---HH
Confidence            122222111110000         00112344433321      122233333333221111111000   0110   00


Q ss_pred             HHHHHHhhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 014883          253 RLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (416)
Q Consensus       253 ~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~  332 (416)
                       +. +......+. ..+...+.+||++.|+++|++.+     .|+++++|++|..+  ++. +.|++ +++++.||+||+
T Consensus       358 -l~-~wdqd~~~e-~~G~~~~v~GG~~~LieaLa~~L-----~I~Ln~~Vt~I~~~--~dg-V~V~~-~~~~~~AD~VIv  425 (881)
T PLN03000        358 -LA-FWDQDDPYD-MGGDHCFLPGGNGRLVQALAENV-----PILYEKTVQTIRYG--SNG-VKVIA-GNQVYEGDMVLC  425 (881)
T ss_pred             -HH-Hhhhccccc-CCCceEEeCCCHHHHHHHHHhhC-----CcccCCcEEEEEEC--CCe-EEEEE-CCcEEEeceEEE
Confidence             11 111100111 11335678999999999997643     39999999999986  332 45664 446899999996


Q ss_pred             C-CCCCCCCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCCCCC
Q 014883          333 D-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP  378 (416)
Q Consensus       333 ~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~~~  378 (416)
                      + |...+..-.+.+.|+||+.+....++..+|.+.|+++.|+++|=+
T Consensus       426 TVPlgVLk~~~I~F~PpLP~~K~~AI~rL~~G~l~KViL~Fd~~FW~  472 (881)
T PLN03000        426 TVPLGVLKNGSIKFVPELPQRKLDCIKRLGFGLLNKVAMLFPYVFWS  472 (881)
T ss_pred             cCCHHHHhhCceeeCCCCCHHHHHHHHcCCCcceEEEEEEeCCcccc
Confidence            5 665555333578999999998888999999999999999999643

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.82  E-value=2.5e-19  Score=178.80  Aligned_cols=112  Identities=16%  Similarity=0.077  Sum_probs=85.0

Q ss_pred             EEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE-CCCCCCCCCCCCchhhh
Q 014883          271 LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL-DPSFTVPGSLASSHQQL  349 (416)
Q Consensus       271 ~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~-~p~~~~~~l~~~~~~~l  349 (416)
                      .....+|+..+.++++.     |..|+++..|.+|.... ++. +.|+..++..+.||+||+ .|-..+..-.+.+.|+|
T Consensus       211 ~~~~~~G~~~v~~~la~-----~l~I~~~~~v~~i~~~~-~~~-~~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~L  283 (501)
T KOG0029|consen  211 HLLMKGGYEPVVNSLAE-----GLDIHLNKRVRKIKYGD-DGA-VKVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPL  283 (501)
T ss_pred             hhHhhCCccHHHhhcCC-----CcceeeceeeEEEEEec-CCc-eEEEEECCCeeEeeEEEEEccHHHhccCceeeCCCC
Confidence            35678999999887754     99999999999999973 443 345556666699999984 35444444346799999


Q ss_pred             hhhhhhccccCCcceEEEEEEEecCCCCCCCCceEEEeCC
Q 014883          350 QESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPP  389 (416)
Q Consensus       350 ~~~~~~~~~~~~~~~~~k~i~i~~~p~~~~~~~~~~~~pp  389 (416)
                      |..+....++-..|.+.|.++.|++.|=+.........++
T Consensus       284 p~~k~~aI~~lg~g~~~Kv~l~F~~~fW~~~~d~fg~~~~  323 (501)
T KOG0029|consen  284 PRWKQEAIDRLGFGLVNKVILEFPRVFWDQDIDFFGIVPE  323 (501)
T ss_pred             cHHHHHHHHhcCCCceeEEEEEeccccCCCCcCeEEEccc
Confidence            9999999999999999999999999976433334444443

>PLN02976 amine oxidase

Probab=99.82  E-value=1e-18  Score=186.32  Aligned_cols=105  Identities=11%  Similarity=0.022  Sum_probs=81.8

Q ss_pred             ccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecC-------CCcEEEEEeCCCcEEEcCEEEEC-CCCCCCC
Q 014883          269 GALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQN-------SGSYKGVRLASGQDILSHKLVLD-PSFTVPG  340 (416)
Q Consensus       269 ~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~-------~g~~~gV~l~~G~~i~Ad~VI~~-p~~~~~~  340 (416)
                      |..++++||++.|+++|++.+     .|+||++|++|.+...       ++.-+.|++.+|+++.||+||++ |...+..
T Consensus       926 G~~~rIkGGYqqLIeALAe~L-----~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftADaVIVTVPLGVLKa 1000 (1713)
T PLN02976        926 GAHCMIKGGYSNVVESLAEGL-----DIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLGDAVLITVPLGCLKA 1000 (1713)
T ss_pred             CceEEeCCCHHHHHHHHHhhC-----CeecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEeceEEEeCCHHHhhh
Confidence            345678999999999997632     4999999999988410       12225677889999999999965 5444442


Q ss_pred             CCCCchhhhhhhhhhccccCCcceEEEEEEEecCCCCC
Q 014883          341 SLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP  378 (416)
Q Consensus       341 l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~~~  378 (416)
                      -.+.|.|+||..+....++..+|.+.|.++.|++||=+
T Consensus      1001 g~I~FsPPLPe~KqaAIqrLgfG~lnKV~LeFdrpFW~ 1038 (1713)
T PLN02976       1001 ETIKFSPPLPDWKYSSIQRLGFGVLNKVVLEFPEVFWD 1038 (1713)
T ss_pred             cccccCCcccHHHHHHHHhhccccceEEEEEeCCcccc
Confidence            22468999999988888889999999999999999644

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=99.81  E-value=7.1e-20  Score=172.39  Aligned_cols=72  Identities=35%  Similarity=0.415  Sum_probs=64.0

Q ss_pred             ccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC--CCCCCCCCC
Q 014883          269 GALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD--PSFTVPGSL  342 (416)
Q Consensus       269 ~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~--p~~~~~~l~  342 (416)
                      |.+.||+|||++++.++++.++..|++|.+++.|++|..|  +|+++||++.||++++++.||+|  |-.++.+|+
T Consensus       254 g~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd--~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLl  327 (561)
T KOG4254|consen  254 GGWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLD--SGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLL  327 (561)
T ss_pred             CcccCCCCChhHHHHHHHHHHHhccceeeehhhhhheecc--CCeEEEEEecCCcEEEeeeeecCCchHHHHHHhC
Confidence            3478999999999999999999999999999999999998  89999999999999999999976  444555554

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=99.78  E-value=5.5e-17  Score=162.00  Aligned_cols=244  Identities=11%  Similarity=0.157  Sum_probs=145.7

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhC----CCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCccccccc
Q 014883           18 IEPTAFDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEI   93 (416)
Q Consensus        18 ~~~~~~DViIIGaGl~GL~aA~~La~~----G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (416)
                      -..+..+|+|||||++||+||++|++.    |++|+|||+++++||++.++....                         
T Consensus        18 ~~~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~-------------------------   72 (576)
T PRK13977         18 EGVDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPE-------------------------   72 (576)
T ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCccccc-------------------------
Confidence            334457999999999999999999996    689999999999999998865321                         


Q ss_pred             cccccccccCCCCceEeeCCCCeEEeeCchHHHHHHhc------C---ccccccccccccee---e-eccCCceeecCCC
Q 014883           94 SNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKS------G---ASHYLEFKSIDATF---M-LDADAKLCSVPDS  160 (416)
Q Consensus        94 ~~~~~~~~~~~~~~~~~dl~Gp~~~~~~~~~~~~l~~~------g---~~~~~~f~~~~~~~---~-~~~~g~~~~~p~~  160 (416)
                                  .+|.++. |+.+...-..+.+++.+.      |   .++|..+.+.++.+   . +..+|..+..+  
T Consensus        73 ------------~Gy~~~~-G~~~~~~y~~l~~ll~~ipsle~~g~sv~dd~~~~~~~~p~~s~~Rl~~~~g~~~d~~--  137 (576)
T PRK13977         73 ------------KGYVARG-GREMENHFECLWDLFRSIPSLEDPGASVLDEFYWFNKDDPNYSKARLIHKRGEILDTD--  137 (576)
T ss_pred             ------------CCEEEEC-CCCccchHHHHHHHHHhccccCCCCcccccceeeeecCCcccceeeEEcCCCCEEECc--
Confidence                        2344444 354322222455555432      1   33556665555543   1 11133222211  


Q ss_pred             hhhhhhcCCCChHHHHHHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHHhccCCchh
Q 014883          161 RAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEV  240 (416)
Q Consensus       161 ~~~~~~~~~l~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (416)
                         .   -.++..++..|.+++-   ..             ..++.+.++.+|+++.........+.  . .+..+.   
T Consensus       138 ---~---~~L~~k~r~~Ll~l~l---~~-------------e~~Ld~~tI~d~f~~~Ff~t~Fw~~w--~-t~FaF~---  189 (576)
T PRK13977        138 ---K---FGLSKKDRKELLKLLL---TP-------------EEKLDDKTIEDWFSPEFFETNFWYYW--R-TMFAFE---  189 (576)
T ss_pred             ---C---CCCCHHHHHHHHHHhc---cC-------------HHHhCCcCHHHHHhhcCchhHHHHHH--H-HHHCCc---
Confidence               0   1233333333433221   10             12456789999999755533222211  1 222222   


Q ss_pred             hhhhhchhhHHHHHHHHHhhhccccCCCccEEeecCC-cchHHHHHHHHHHhcCcEEEcCCceeEEEEecCC--CcEEEE
Q 014883          241 SEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNS--GSYKGV  317 (416)
Q Consensus       241 ~~~~~s~~~~~~~~~~~~~s~~~~g~~~~~~~~p~gG-~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~--g~~~gV  317 (416)
                        +..|+......+.+|+.-+...... .++.+.+|- ...|.+.|.+.+++.|++|++|++|++|..+.++  +++++|
T Consensus       190 --~whSA~E~rry~~rf~~~~~~l~~~-s~l~ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI  266 (576)
T PRK13977        190 --KWHSALEMRRYMHRFIHHIGGLPDL-SGLKFTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAI  266 (576)
T ss_pred             --hhhHHHHHHHHHHHHHHhhccCCcc-ccccCCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEE
Confidence              2467777666666665544444322 124444554 4689999999999999999999999999984113  678888


Q ss_pred             EeC-CCc--E---EEcCEEEE
Q 014883          318 RLA-SGQ--D---ILSHKLVL  332 (416)
Q Consensus       318 ~l~-~G~--~---i~Ad~VI~  332 (416)
                      .+. +|+  +   ..+|.||+
T Consensus       267 ~~~~~~~~~~I~l~~~DlViv  287 (576)
T PRK13977        267 HLTRNGKEETIDLTEDDLVFV  287 (576)
T ss_pred             EEEeCCceeEEEecCCCEEEE
Confidence            774 332  2   36788883

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=99.72  E-value=1.1e-15  Score=140.12  Aligned_cols=289  Identities=15%  Similarity=0.114  Sum_probs=159.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCccccccccccccccc
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL  101 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (416)
                      ..+|.|||+|++||+||+.|++. ++|+++|+++|+||+++|...+-                                 
T Consensus         8 r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~---------------------------------   53 (447)
T COG2907           8 RRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNT---------------------------------   53 (447)
T ss_pred             CcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccc---------------------------------
Confidence            35899999999999999999987 99999999999999999985320                                 


Q ss_pred             cCCCCceEeeCCCCeEEeeC---chHHHHHHhcCcccccccccccceeeeccCCceeecCC--Chhhhhhc--CCCChHH
Q 014883          102 SQHPRNFNLDVSGPRVLFCA---DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPD--SRAAIFKD--KSLGLME  174 (416)
Q Consensus       102 ~~~~~~~~~dl~Gp~~~~~~---~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~--~~~~~~~~--~~l~~~~  174 (416)
                        +...+.+|.+  .+++..   -.+.+++.+.|++....+-+..-  .+  |+.-.++.+  ....++..  ..+.+  
T Consensus        54 --d~~g~~vDtG--fiVyn~~tYpnl~~Lf~~iGv~t~as~Msf~v--~~--d~gglEy~g~tgl~~L~aqk~n~l~p--  123 (447)
T COG2907          54 --DGGGVFVDTG--FIVYNERTYPNLTRLFKTIGVDTKASFMSFSV--SL--DMGGLEYSGLTGLAGLLAQKRNLLRP--  123 (447)
T ss_pred             --cCCceeecce--eEEecCCCcchHHHHHHHcCCCCcccceeEEE--Ee--cCCceeeccCCCccchhhccccccch--
Confidence              1112335542  333221   26888999999877655543211  11  222222221  11122221  11111  


Q ss_pred             HHHHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHH--HhccCCchhhhhhhchhhHHH
Q 014883          175 KNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAI--AMADYDQEVSEYVLKTRDGIN  252 (416)
Q Consensus       175 k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~s~~~~~~  252 (416)
                        ++.+++..+..+..+.....+    .....+.|+.+||++.+.+...++-+.+.+  +..+.+..    +++...+ .
T Consensus       124 --Rf~~mlaeiLrf~r~~~~~~d----~~~~~~~tl~~~L~~~~f~~af~e~~l~P~~aaiwstp~~----d~~~~pa-~  192 (447)
T COG2907         124 --RFPCMLAEILRFYRSDLAPSD----NAGQGDTTLAQYLKQRNFGRAFVEDFLQPLVAAIWSTPLA----DASRYPA-C  192 (447)
T ss_pred             --hHHHHHHHHHHHhhhhccchh----hhcCCCccHHHHHHhcCccHHHHHHhHHHHHHHHhcCcHh----hhhhhhH-H
Confidence              112222222111111000000    123456899999999999988776554432  22221111    2232222 2


Q ss_pred             HHHHHHhhhccccCCCcc-EEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE
Q 014883          253 RLALYNSSIGRFQNALGA-LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV  331 (416)
Q Consensus       253 ~~~~~~~s~~~~g~~~~~-~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI  331 (416)
                      .+..|+...|...-.+-+ +..+.||+..-.+.|   ++..+++|.++++|.+|.+-. +|+  .|...+|++-+.|+||
T Consensus       193 ~~~~f~~nhGll~l~~rp~wrtV~ggS~~yvq~l---aa~~~~~i~t~~~V~~l~rlP-dGv--~l~~~~G~s~rFD~vV  266 (447)
T COG2907         193 NFLVFTDNHGLLYLPKRPTWRTVAGGSRAYVQRL---AADIRGRIETRTPVCRLRRLP-DGV--VLVNADGESRRFDAVV  266 (447)
T ss_pred             HHHHHHhccCceecCCCCceeEcccchHHHHHHH---hccccceeecCCceeeeeeCC-Cce--EEecCCCCccccceee
Confidence            223333332221111123 445788998888855   467889999999999999863 663  3444679998999988


Q ss_pred             --ECCCCCCCCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCCCC
Q 014883          332 --LDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK  377 (416)
Q Consensus       332 --~~p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~~  377 (416)
                        +.|+..+. |+.   .+=|+.++.+ +. ...+-.++++-.+..+.
T Consensus       267 iAth~dqAl~-mL~---e~sp~e~qll-~a-~~Ys~n~aVlhtd~~lm  308 (447)
T COG2907         267 IATHPDQALA-LLD---EPSPEERQLL-GA-LRYSANTAVLHTDASLM  308 (447)
T ss_pred             eecChHHHHH-hcC---CCCHHHHHHH-Hh-hhhhhceeEEeeccccc
Confidence              45776533 322   1223344422 22 12334455555565444

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=99.70  E-value=4.7e-17  Score=161.86  Aligned_cols=98  Identities=17%  Similarity=0.119  Sum_probs=71.6

Q ss_pred             cchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC-CCCCCCCCCCCchhhhhhhhhhc
Q 014883          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAF  356 (416)
Q Consensus       278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~  356 (416)
                      .+.+...++..+...|++|++|++|++|..+  +++ +.|.+.+|+++.||+||++ |...+.+  +.+.|++|......
T Consensus       208 ~g~~~~~~~~~~~~~g~~i~l~~~V~~I~~~--~~~-v~v~~~~g~~~~ad~VI~a~p~~~l~~--i~~~p~l~~~~~~a  282 (450)
T PF01593_consen  208 MGGLSLALALAAEELGGEIRLNTPVTRIERE--DGG-VTVTTEDGETIEADAVISAVPPSVLKN--ILLLPPLPEDKRRA  282 (450)
T ss_dssp             TTTTHHHHHHHHHHHGGGEESSEEEEEEEEE--SSE-EEEEETTSSEEEESEEEE-S-HHHHHT--SEEESTSHHHHHHH
T ss_pred             ccchhHHHHHHHhhcCceeecCCcceecccc--ccc-cccccccceEEecceeeecCchhhhhh--hhhccccccccccc
Confidence            3444444545566778899999999999998  555 4677899999999999965 5444343  24577788755555


Q ss_pred             cccCCcceEEEEEEEecCCCCCCC
Q 014883          357 SLSDNKGKVARGICITRSSLKPDL  380 (416)
Q Consensus       357 ~~~~~~~~~~k~i~i~~~p~~~~~  380 (416)
                      .+...+..+.+.++.+++++-+..
T Consensus       283 ~~~~~~~~~~~v~l~~~~~~~~~~  306 (450)
T PF01593_consen  283 IENLPYSSVSKVFLGFDRPFWPPD  306 (450)
T ss_dssp             HHTEEEEEEEEEEEEESSGGGGST
T ss_pred             ccccccCcceeEEEeeeccccccc
Confidence            577778889999999999986543

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=99.70  E-value=8.2e-16  Score=146.91  Aligned_cols=114  Identities=14%  Similarity=0.063  Sum_probs=81.5

Q ss_pred             EeecCCcchHHHHHHHHHH----hcC--cEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCC-CCCC-CCC
Q 014883          272 IYPIYGQGELPQAFCRRAA----VKG--CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSF-TVPG-SLA  343 (416)
Q Consensus       272 ~~p~gG~~~l~~al~r~~~----~~G--g~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~~-~~~~-l~~  343 (416)
                      ....-|..++.+-|.+.+.    ++|  ++++++++|.+|..+ +++. +.|++.||+.+.||+||++-+. .+.. -..
T Consensus       216 ~~~~kGy~~iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~-~~~~-v~l~c~dg~v~~adhVIvTvsLGvLk~~h~~  293 (498)
T KOG0685|consen  216 IWNKKGYKRILKLLMAVIPAQNIELGLWKRIHLNTRVENINWK-NTGE-VKLRCSDGEVFHADHVIVTVSLGVLKEQHHK  293 (498)
T ss_pred             eechhHHHHHHHHHhccCCCcchhcCchhhhcccccceeeccC-CCCc-EEEEEeCCcEEeccEEEEEeechhhhhhhhh
Confidence            3445566777666654322    233  566777999999987 3566 5788999999999999966332 1122 011


Q ss_pred             CchhhhhhhhhhccccCCcceEEEEEEEecCCCCCCCCceEEEe
Q 014883          344 SSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIF  387 (416)
Q Consensus       344 ~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~~~~~~~~~~~~  387 (416)
                      -|.||||..+..-.++...|.+-|..+-|++||-+..-+.+..+
T Consensus       294 lF~P~LP~~K~~AIe~lgfGtv~KiFLE~E~pfwp~~~~~i~~l  337 (498)
T KOG0685|consen  294 LFVPPLPAEKQRAIERLGFGTVNKIFLEFEEPFWPSDWNGIQLL  337 (498)
T ss_pred             hcCCCCCHHHHHHHHhccCCccceEEEEccCCCCCCCCceeEEE
Confidence            47899999999999999999999999999999877654433333

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=99.67  E-value=1.1e-14  Score=137.24  Aligned_cols=294  Identities=18%  Similarity=0.187  Sum_probs=169.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEE--EccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCccccccccccccc
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLH--LDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~v--lE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (416)
                      ..+|+|||||++||+||++|++.+-+|+|  +|+.+|+||-.+|..-.                                
T Consensus        11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~--------------------------------   58 (491)
T KOG1276|consen   11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQ--------------------------------   58 (491)
T ss_pred             cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCC--------------------------------
Confidence            46999999999999999999999988755  99999999999993221                                


Q ss_pred             cccCCCCceEeeCCCCeEEeeCc----hHHHHHHhcCccccccccccc-c----eeeeccCCceeecCCChhhhhhcCCC
Q 014883          100 LLSQHPRNFNLDVSGPRVLFCAD----HAVDLMLKSGASHYLEFKSID-A----TFMLDADAKLCSVPDSRAAIFKDKSL  170 (416)
Q Consensus       100 ~~~~~~~~~~~dl~Gp~~~~~~~----~~~~~l~~~g~~~~~~f~~~~-~----~~~~~~~g~~~~~p~~~~~~~~~~~l  170 (416)
                            ..|-++. ||.-+...+    ...+++.++|+++-+.-...+ +    .+++ +.|++..+|.+....... .+
T Consensus        59 ------ng~ifE~-GPrtlrpag~~g~~~l~lv~dLGl~~e~~~i~~~~paaknr~l~-~~~~L~~vP~sl~~s~~~-~l  129 (491)
T KOG1276|consen   59 ------NGFIFEE-GPRTLRPAGPGGAETLDLVSDLGLEDELQPIDISHPAAKNRFLY-VPGKLPTVPSSLVGSLKF-SL  129 (491)
T ss_pred             ------Cceeecc-CCCccCcCCcchhHHHHHHHHcCccceeeecCCCChhhhheeec-cCcccccCCccccccccc-cc
Confidence                  1223444 355442222    478889999997654322222 1    3443 477888888765442211 22


Q ss_pred             ChHHHHHHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHh-cCCChhHHHHHHHHHHhccCCchhhhhhhchhh
Q 014883          171 GLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTK-MKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRD  249 (416)
Q Consensus       171 ~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  249 (416)
                      .+.-|..+..|+........           .....+.++.+|.+| |+  +++.+.+..+++.+-|..|+  .++|++.
T Consensus       130 ~p~~k~L~~a~l~e~fr~~~-----------~~~~~dESV~sF~~RrfG--~eV~d~~isp~i~GiyAgD~--~~LSmk~  194 (491)
T KOG1276|consen  130 QPFGKPLLEAFLRELFRKKV-----------SDPSADESVESFARRRFG--KEVADRLISPFIRGIYAGDP--SELSMKS  194 (491)
T ss_pred             CcccchhHHHHHhhhccccC-----------CCCCccccHHHHHHHhhh--HHHHHHHHHHHhCccccCCh--HHhhHHH
Confidence            33344444444432211100           122356899999985 55  55666555554555566666  4688776


Q ss_pred             HHHHHHHHHhhhcc---------cc--------------C--CCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeE
Q 014883          250 GINRLALYNSSIGR---------FQ--------------N--ALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVIS  304 (416)
Q Consensus       250 ~~~~~~~~~~s~~~---------~g--------------~--~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~  304 (416)
                      .+..+.......|.         ++              .  ..=+.+-.+||+..++++|++.+.+....|.++-++..
T Consensus       195 ~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~~~~~~~~e~~~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~  274 (491)
T KOG1276|consen  195 SFGKLWKVEQKHGSIILGTIRAKFARKRTKKAETALSAQAKKEKWTMFSLKGGLETLPKALRKSLGEREVSISLGLKLSG  274 (491)
T ss_pred             HHHHHHHHHHhccchhHHHHHHHHHhhcCCCccchhhhhhcccccchhhhhhhHhHhHHHHHHHhcccchhhhccccccc
Confidence            66554432222210         00              0  00013467999999999999988888888999999988


Q ss_pred             EEEecCCCcEEEEEeCCCcE-EEcCEEEEC-CCCCCCCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCC
Q 014883          305 LLTDQNSGSYKGVRLASGQD-ILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSS  375 (416)
Q Consensus       305 I~~~~~~g~~~gV~l~~G~~-i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p  375 (416)
                      +.....++...+.+..++.. ...+++.++ |...+..+..    ++.+...+.....++-.|+-+.+-|.++
T Consensus       275 ~sk~~~~~~~~tl~~~~~~~~~~~~~~~~t~~~~k~a~ll~----~~~~sls~~L~ei~y~~V~vVn~~yp~~  343 (491)
T KOG1276|consen  275 NSKSRSGNWSLTLVDHSGTQRVVVSYDAATLPAVKLAKLLR----GLQNSLSNALSEIPYVPVAVVNTYYPKE  343 (491)
T ss_pred             ccccccCCceeEeEcCCCceeeeccccccccchHHhhhhcc----ccchhhhhhhhcCCCCceEEEEEeccCc
Confidence            87653233233333334432 222332222 2222223222    2222222222334556666666667664

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=99.57  E-value=2.9e-14  Score=138.96  Aligned_cols=251  Identities=18%  Similarity=0.152  Sum_probs=140.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCccccccccccccccccC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ  103 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (416)
                      .|+|+|||++||+||..|+++|++|+|+|+++++||++.+|.... +.|                               
T Consensus         2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~d-g~~-------------------------------   49 (485)
T COG3349           2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSD-GNH-------------------------------   49 (485)
T ss_pred             eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCC-CCe-------------------------------
Confidence            699999999999999999999999999999999999999998643 111                               


Q ss_pred             CCCceEeeCCCCeEEee-CchHHHHHHhcCcccccccccccceeeec--cCCcee--ecCCC------hhhhhhcCCCCh
Q 014883          104 HPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKSIDATFMLD--ADAKLC--SVPDS------RAAIFKDKSLGL  172 (416)
Q Consensus       104 ~~~~~~~dl~Gp~~~~~-~~~~~~~l~~~g~~~~~~f~~~~~~~~~~--~~g~~~--~~p~~------~~~~~~~~~l~~  172 (416)
                            .+. |=++++. --.++.+|.+.+.+..+.+++....++-.  ..|..-  ..|..      ..+.++.+.+..
T Consensus        50 ------~E~-glh~f~~~Y~n~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~p~~~~~~~l~~~~~~~  122 (485)
T COG3349          50 ------VEH-GLHVFFGCYYNLLTLLKELPIEDRLQLREHTKTFVGSGTRPGAIGRFARPDAPQPTNGLKAFLRLPQLPR  122 (485)
T ss_pred             ------eee-eeEEechhHHHHHHHhhhCCchheeehHhhhhhhcccCCCCCcccccccCCCCCcchhhhhhhhccccCH
Confidence                  111 1222222 22577888888887666666544433211  112111  11111      112223333333


Q ss_pred             HHHHHHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhHH-HHHH-HHHHhccCCchhhhhhhchhhH
Q 014883          173 MEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIK-SIVL-YAIAMADYDQEVSEYVLKTRDG  250 (416)
Q Consensus       173 ~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~s~~~~  250 (416)
                      .+|..+   .-.+.....      .......++++.++.+||++++...... +.+. .+.++.-...+    ..|+...
T Consensus       123 ~~~~~~---~~~l~~~~~------g~~~~~~eld~~s~~d~l~~~g~~~~~~k~~~~~~~~~l~f~~~e----~~sa~~~  189 (485)
T COG3349         123 REKIRF---VLRLGDAPI------GADRSLRELDKISFADWLKEKGAREGAYKAAFAPIALALTFIDPE----GCSARFF  189 (485)
T ss_pred             HHHhHH---hhccccccc------hhHHHHHHHhcccHHHHHHHhCCCchhHHHHHHHHHHhhcccCcc----cCcchhH
Confidence            444332   111000000      0012245677899999999877654433 3222 11122111222    3455443


Q ss_pred             HHHHHHHHhhhccccCCCccEEeecCCcc-hHHHHHHHHHHhcCcEEEcCCceeEEEEec--CCCcEEEEEeCCCcEEEc
Q 014883          251 INRLALYNSSIGRFQNALGALIYPIYGQG-ELPQAFCRRAAVKGCLYVLRMPVISLLTDQ--NSGSYKGVRLASGQDILS  327 (416)
Q Consensus       251 ~~~~~~~~~s~~~~g~~~~~~~~p~gG~~-~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~--~~g~~~gV~l~~G~~i~A  327 (416)
                      +..+..++  +...+.  .-....+|+.. .+.+.+.+.+.+.|.+++++.+|+.|..+.  ++.+++++.+. +....+
T Consensus       190 lt~~~~~~--~~~~~~--~i~~~~~g~~~E~~~~p~~~yi~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~-~~~~e~  264 (485)
T COG3349         190 LTILNLFL--IVTLEA--SILRNLRGSPDEVLLQPWTEYIPERGRKVHADYPVKELDLDGARGLAKVTGGDVT-GPEQEQ  264 (485)
T ss_pred             HHHHHHHH--HhccCc--chhhhhcCCCcceeeehhhhhccccCceeeccceeeeeeccccccccceEeeeec-CcceEe
Confidence            33322222  222111  11335677754 455777777888999999999999998752  24457787765 655555


Q ss_pred             CEEE
Q 014883          328 HKLV  331 (416)
Q Consensus       328 d~VI  331 (416)
                      ..++
T Consensus       265 ~~~~  268 (485)
T COG3349         265 QAAL  268 (485)
T ss_pred             eehh
Confidence            5544

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=99.43  E-value=1.8e-12  Score=125.45  Aligned_cols=43  Identities=26%  Similarity=0.426  Sum_probs=40.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS   65 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~   65 (416)
                      +||+|||||++||++|..|++.|++|+|+|+++++||.|.+..
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~   44 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEV   44 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeec
Confidence            7999999999999999999999999999999999999887753

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=99.42  E-value=3.5e-13  Score=97.69  Aligned_cols=41  Identities=22%  Similarity=0.323  Sum_probs=38.3

Q ss_pred             EECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChh
Q 014883           27 VIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIA   67 (416)
Q Consensus        27 IIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~   67 (416)
                      |||||++||+||++|+++|++|+|+|+++++||++.++..+
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~   41 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIP   41 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEET
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEEC
Confidence            89999999999999999999999999999999999998764

...

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.38  E-value=4.8e-12  Score=119.48  Aligned_cols=59  Identities=20%  Similarity=0.227  Sum_probs=51.6

Q ss_pred             EEeec-CCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 014883          271 LIYPI-YGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (416)
Q Consensus       271 ~~~p~-gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~  332 (416)
                      .++|. ..++.|.++|.+.+++.|++|+++++|.+|..+  + ....|.+.+|++++||.+|+
T Consensus       102 r~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~--~-~~f~l~t~~g~~i~~d~lil  161 (408)
T COG2081         102 RMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKD--D-SGFRLDTSSGETVKCDSLIL  161 (408)
T ss_pred             eecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEec--C-ceEEEEcCCCCEEEccEEEE
Confidence            36787 789999999999999999999999999999986  3 33678888898999999883

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.33  E-value=3.2e-11  Score=116.95  Aligned_cols=60  Identities=30%  Similarity=0.409  Sum_probs=52.0

Q ss_pred             EEeecCC---cchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883          271 LIYPIYG---QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (416)
Q Consensus       271 ~~~p~gG---~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (416)
                      +..+.+|   ...+.++|.+.+++.|++|+.+++|++|..+  ++++.+|++.+|+ ++||+||+.
T Consensus       136 ~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~--~~~v~gv~~~~g~-i~ad~vV~a  198 (358)
T PF01266_consen  136 VFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVD--GGRVTGVRTSDGE-IRADRVVLA  198 (358)
T ss_dssp             EEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEE--TTEEEEEEETTEE-EEECEEEE-
T ss_pred             hcccccccccccchhhhhHHHHHHhhhhccccccccchhhc--ccccccccccccc-cccceeEec
Confidence            5678888   7899999999999999999999999999998  7777789988887 999999954

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.26  E-value=3.7e-11  Score=117.86  Aligned_cols=60  Identities=15%  Similarity=0.206  Sum_probs=47.7

Q ss_pred             EEeecC-CcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 014883          271 LIYPIY-GQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (416)
Q Consensus       271 ~~~p~g-G~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~  332 (416)
                      ..||.- -+..+.++|.+.++++|++|+++++|++|+.+  ++.+..|++.+++++.||+||+
T Consensus       100 r~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~--~~~~f~v~~~~~~~~~a~~vIL  160 (409)
T PF03486_consen  100 RVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKK--EDGVFGVKTKNGGEYEADAVIL  160 (409)
T ss_dssp             EEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEE--TTEEEEEEETTTEEEEESEEEE
T ss_pred             EECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeec--CCceeEeeccCcccccCCEEEE
Confidence            467866 47899999999999999999999999999987  6666789876888999999994

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=99.17  E-value=2e-10  Score=105.03  Aligned_cols=100  Identities=20%  Similarity=0.382  Sum_probs=70.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCccccccccccccccc
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL  101 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (416)
                      ++|.+|||||++|+..|..|++.|++|+|+|||+.+||.|-+...+.                                 
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~---------------------------------   47 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQ---------------------------------   47 (374)
T ss_pred             CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCC---------------------------------
Confidence            48999999999999999999999999999999999999998865421                                 


Q ss_pred             cCCCCceEeeCCCCeEEeeCc-hHHHHHHhcCcccccccccccceeeeccCCceeecCCChhh
Q 014883          102 SQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAA  163 (416)
Q Consensus       102 ~~~~~~~~~dl~Gp~~~~~~~-~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~  163 (416)
                          .+..+.-.||+++++.+ ...+.+     .++.+|....+...-..+|..+++|.+...
T Consensus        48 ----tGIlvHkYGpHIFHT~~~~Vwdyv-----~~F~e~~~Y~hrVla~~ng~~~~lP~nl~t  101 (374)
T COG0562          48 ----TGILVHKYGPHIFHTDNKRVWDYV-----NQFTEFNPYQHRVLALVNGQLYPLPFNLNT  101 (374)
T ss_pred             ----CCeEEeeccCceeecCchHHHHHH-----hhhhhhhhhccceeEEECCeeeeccccHHH
Confidence                01112223799887776 333333     234555544433321237899999976543

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.17  E-value=7.9e-10  Score=107.75  Aligned_cols=61  Identities=21%  Similarity=0.335  Sum_probs=49.4

Q ss_pred             EEeecCC---cchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcE-EEcCEEEEC
Q 014883          271 LIYPIYG---QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQD-ILSHKLVLD  333 (416)
Q Consensus       271 ~~~p~gG---~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~-i~Ad~VI~~  333 (416)
                      .+.|.+|   .++++.+|++.+...|++++||++|+.|+.+. +| ++.+.+.+|++ ++|+.||..
T Consensus       142 l~~p~~giV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~-dg-~~~~~~~~g~~~~~ak~Vin~  206 (429)
T COG0579         142 LLVPSGGIVDPGELTRALAEEAQANGVELRLNTEVTGIEKQS-DG-VFVLNTSNGEETLEAKFVINA  206 (429)
T ss_pred             EEcCCCceEcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeC-Cc-eEEEEecCCcEEEEeeEEEEC
Confidence            4566666   46889999999999999999999999999872 43 45566778877 999999943

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=99.17  E-value=7.8e-10  Score=109.22  Aligned_cols=59  Identities=19%  Similarity=0.209  Sum_probs=46.6

Q ss_pred             EEeecCCc---chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (416)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (416)
                      ++.|.+|.   ..+.++|.+.+++.|++++++++|++|..+  ++. +.|++.+| ++.||.||+.
T Consensus       138 l~~p~~g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~--~~~-~~V~~~~g-~i~ad~vV~A  199 (393)
T PRK11728        138 IFVPSTGIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEH--ANG-VVVRTTQG-EYEARTLINC  199 (393)
T ss_pred             EEcCCceEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEec--CCe-EEEEECCC-EEEeCEEEEC
Confidence            44566663   688899999899999999999999999875  444 46776665 7999999953

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=99.13  E-value=4.2e-09  Score=106.12  Aligned_cols=57  Identities=25%  Similarity=0.301  Sum_probs=44.8

Q ss_pred             EEeecCCc---chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 014883          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (416)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~  332 (416)
                      .+.+.+|.   ..++++|++.++..|++|+.+++|++|..   ++. +.|++.+| +++||+||+
T Consensus       172 ~~~~~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~---~~~-~~v~t~~g-~v~A~~VV~  231 (460)
T TIGR03329       172 FYSPVAASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE---GQP-AVVRTPDG-QVTADKVVL  231 (460)
T ss_pred             EEeCCCeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee---CCc-eEEEeCCc-EEECCEEEE
Confidence            55666663   57889999999999999999999999974   222 56776555 799999884

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=99.06  E-value=2.5e-09  Score=105.03  Aligned_cols=58  Identities=21%  Similarity=0.179  Sum_probs=44.0

Q ss_pred             EEeecCCc---chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 014883          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (416)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~  332 (416)
                      ++.+.+|.   ..+.++|.+.++..|++++.+++|++|..+  ++. +.|++.++ ++.||+||+
T Consensus       134 ~~~~~~g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~--~~~-~~v~~~~~-~i~a~~vV~  194 (380)
T TIGR01377       134 LLDPNGGVLYAEKALRALQELAEAHGATVRDGTKVVEIEPT--ELL-VTVKTTKG-SYQANKLVV  194 (380)
T ss_pred             EEcCCCcEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEec--CCe-EEEEeCCC-EEEeCEEEE
Confidence            34455553   477888888888899999999999999875  444 45776555 799999884

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=99.03  E-value=6.5e-09  Score=105.05  Aligned_cols=58  Identities=29%  Similarity=0.362  Sum_probs=46.7

Q ss_pred             ecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeC--CC--cEEEcCEEEEC
Q 014883          274 PIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA--SG--QDILSHKLVLD  333 (416)
Q Consensus       274 p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~--~G--~~i~Ad~VI~~  333 (416)
                      +.+|...+.+.|.+.+++.|++|+++++|++|..+  ++++++|+..  ++  ..++|+.||+.
T Consensus       126 ~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~--~g~v~gv~~~~~~g~~~~i~a~~VIlA  187 (466)
T PRK08274        126 FWGGGKALVNALYRSAERLGVEIRYDAPVTALELD--DGRFVGARAGSAAGGAERIRAKAVVLA  187 (466)
T ss_pred             ecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec--CCeEEEEEEEccCCceEEEECCEEEEC
Confidence            44556778899999899999999999999999986  7888888753  33  36899999943

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=99.00  E-value=1.2e-08  Score=101.29  Aligned_cols=61  Identities=20%  Similarity=0.265  Sum_probs=45.7

Q ss_pred             EEeecCCc---chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (416)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (416)
                      ++.+.+|.   ..++.+|++.+...|++++.+++|++|+.+ +++++++|++.+| ++.|++||+.
T Consensus       172 ~~~~~~g~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~-~~~~~~~v~t~~g-~i~a~~vVva  235 (407)
T TIGR01373       172 LLQRRGGTARHDAVAWGYARGADRRGVDIIQNCEVTGFIRR-DGGRVIGVETTRG-FIGAKKVGVA  235 (407)
T ss_pred             EEcCCCCcCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEc-CCCcEEEEEeCCc-eEECCEEEEC
Confidence            33444453   357778888889999999999999999754 1566677887666 7999998743

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=98.99  E-value=4.1e-09  Score=103.43  Aligned_cols=58  Identities=28%  Similarity=0.268  Sum_probs=43.7

Q ss_pred             EEeecCCc---chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 014883          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (416)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~  332 (416)
                      .+.+.+|.   ..+.+++.+.+...|++++++++|++|..+  ++. +.|++.+| ++.||+||.
T Consensus       138 ~~~~~~g~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~--~~~-~~v~~~~g-~~~a~~vV~  198 (376)
T PRK11259        138 LFEPDGGFLRPELAIKAHLRLAREAGAELLFNEPVTAIEAD--GDG-VTVTTADG-TYEAKKLVV  198 (376)
T ss_pred             EEcCCCCEEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEee--CCe-EEEEeCCC-EEEeeEEEE
Confidence            34455553   456677777778899999999999999886  443 56876666 799999993

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.98  E-value=3.1e-08  Score=101.84  Aligned_cols=49  Identities=31%  Similarity=0.523  Sum_probs=42.4

Q ss_pred             CCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883           13 PPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (416)
Q Consensus        13 ~~~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (416)
                      |-=.+....++||||||+| +||+||...+++|.+|+||||.+.+||.+.
T Consensus         7 ~~~~~~~d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~   55 (564)
T PRK12845          7 PAGTPVRDTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTA   55 (564)
T ss_pred             CCCCCCCCceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCccc
Confidence            3333344568999999999 999999999999999999999999999776

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=98.97  E-value=4.4e-10  Score=98.16  Aligned_cols=43  Identities=14%  Similarity=0.214  Sum_probs=36.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      .++||+|||||.+||+||++|+++|+||+|+|++..+||..+.
T Consensus        16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~   58 (230)
T PF01946_consen   16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWG   58 (230)
T ss_dssp             TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS
T ss_pred             ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccc
Confidence            3689999999999999999999999999999999999988764

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=98.97  E-value=1.7e-08  Score=103.61  Aligned_cols=60  Identities=27%  Similarity=0.287  Sum_probs=46.2

Q ss_pred             cEEeecCCc---chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeC---CC--cEEEcCEEEE
Q 014883          270 ALIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SG--QDILSHKLVL  332 (416)
Q Consensus       270 ~~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~---~G--~~i~Ad~VI~  332 (416)
                      ++.+|. |.   ..+..++++.+..+|++++.+++|+.|..+  ++++++|++.   +|  .+|+||+||.
T Consensus       138 a~~~~d-g~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~--~~~v~gv~v~d~~~g~~~~i~A~~VVn  205 (546)
T PRK11101        138 AVKVPD-GTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIRE--GDTVCGVRVRDHLTGETQEIHAPVVVN  205 (546)
T ss_pred             EEEecC-cEECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEc--CCeEEEEEEEEcCCCcEEEEECCEEEE
Confidence            355663 42   467788888888999999999999999886  6777777752   23  4789999994

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=98.95  E-value=2.7e-08  Score=91.73  Aligned_cols=53  Identities=15%  Similarity=0.142  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883          281 LPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (416)
Q Consensus       281 l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (416)
                      -.++|...++.+|+.++-+..|+.+...++++..++|++++|..+.|+++|.+
T Consensus       155 slk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t  207 (399)
T KOG2820|consen  155 SLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFT  207 (399)
T ss_pred             HHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEE
Confidence            34667788899999999999999998765677778999999999999999943

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=98.95  E-value=7e-10  Score=96.31  Aligned_cols=42  Identities=17%  Similarity=0.258  Sum_probs=39.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      +.||||||||.+||+||++||++|.||+|+|++-.+||-.+-
T Consensus        30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~   71 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWG   71 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccc
Confidence            569999999999999999999999999999999999987763

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=98.92  E-value=1.7e-08  Score=101.75  Aligned_cols=60  Identities=20%  Similarity=0.262  Sum_probs=46.7

Q ss_pred             EEeecCC-c---chHHHHHHHHHHh----cC--cEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883          271 LIYPIYG-Q---GELPQAFCRRAAV----KG--CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (416)
Q Consensus       271 ~~~p~gG-~---~~l~~al~r~~~~----~G--g~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (416)
                      .+.|..| .   ..++++|.+.++.    .|  ++|+++++|+.|..+  ++..+.|++.+| +++||+||+.
T Consensus       199 l~~p~~g~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~--~~~~~~V~T~~G-~i~A~~VVva  268 (497)
T PTZ00383        199 LYVPNELTTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERS--NDSLYKIHTNRG-EIRARFVVVS  268 (497)
T ss_pred             EEeCCCCEEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEec--CCCeEEEEECCC-EEEeCEEEEC
Confidence            4556543 2   5889999998888    78  678999999999875  455678887666 7999999953

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=98.92  E-value=3e-08  Score=104.44  Aligned_cols=58  Identities=22%  Similarity=0.197  Sum_probs=46.5

Q ss_pred             EEeecCCc---chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 014883          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (416)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~  332 (416)
                      +++|.+|.   ..+.++|.+.+.. |++++.+++|++|..+  ++. +.|++.+|..+.||+||+
T Consensus       397 ~~~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~--~~~-~~v~t~~g~~~~ad~VV~  457 (662)
T PRK01747        397 IFYPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLERE--DDG-WQLDFAGGTLASAPVVVL  457 (662)
T ss_pred             EEeCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEe--CCE-EEEEECCCcEEECCEEEE
Confidence            56777774   4788999888888 9999999999999876  554 458777777788999994

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=98.90  E-value=5.2e-08  Score=96.99  Aligned_cols=59  Identities=25%  Similarity=0.331  Sum_probs=46.7

Q ss_pred             EEeecCCc---chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 014883          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (416)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~  332 (416)
                      +.+|..|.   ..+.++|.+.++..|++|+.+++|++|..+  ++++++|++. +.+++||+||+
T Consensus       190 ~~~p~~g~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~--~~~~~~v~t~-~~~~~a~~VV~  251 (416)
T PRK00711        190 LRLPNDETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVE--GGRITGVQTG-GGVITADAYVV  251 (416)
T ss_pred             EECCCcccCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec--CCEEEEEEeC-CcEEeCCEEEE
Confidence            45666553   477889999888999999999999999876  5666678754 55899999994

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=98.87  E-value=4.3e-09  Score=94.19  Aligned_cols=45  Identities=13%  Similarity=0.315  Sum_probs=43.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhh
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIAD   68 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~   68 (416)
                      +++|||+|++||+||..|+.+|++|+|+||..-+|||..|-++.+
T Consensus         3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~   47 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDG   47 (331)
T ss_pred             cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCC
Confidence            799999999999999999999999999999999999999988765

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=98.79  E-value=3.8e-07  Score=89.34  Aligned_cols=43  Identities=12%  Similarity=0.223  Sum_probs=38.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhC----CCeEEEEccCCCCCCcccccC
Q 014883           23 FDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPFYGSHFSSLS   65 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~----G~~V~vlE~~~~~GG~~~s~~   65 (416)
                      .++-|||+|+++|+||+.|-|.    |.+++|||+.+..||.+...-
T Consensus         3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g   49 (500)
T PF06100_consen    3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAG   49 (500)
T ss_pred             ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCC
Confidence            5788999999999999999775    689999999999999987654

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=98.79  E-value=5.5e-09  Score=103.24  Aligned_cols=43  Identities=21%  Similarity=0.367  Sum_probs=41.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      .+|||||||||++|++||+.|+++|++|+|||+++.+|.+..+
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~   44 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCC   44 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccc
Confidence            4699999999999999999999999999999999999998777

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.76  E-value=1.1e-07  Score=94.91  Aligned_cols=47  Identities=26%  Similarity=0.367  Sum_probs=42.1

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccccc
Q 014883           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (416)
Q Consensus        18 ~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~   64 (416)
                      +.+..+||+|||||++|+-+|+.+|.+|++|+++|++|.-.|-....
T Consensus         8 ~~~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrs   54 (532)
T COG0578           8 LRMEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRS   54 (532)
T ss_pred             ccccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCcc
Confidence            44568999999999999999999999999999999999988876554

>TIGR00292 thiazole biosynthesis enzyme

Probab=98.74  E-value=1e-08  Score=94.48  Aligned_cols=42  Identities=19%  Similarity=0.248  Sum_probs=39.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (416)
                      .++||+|||||.+||+||++|+++|++|+|+||+..+||.++
T Consensus        20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~   61 (254)
T TIGR00292        20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSW   61 (254)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcccc
Confidence            368999999999999999999999999999999999998643

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=98.72  E-value=1.4e-08  Score=93.91  Aligned_cols=41  Identities=15%  Similarity=0.268  Sum_probs=38.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (416)
                      .++||+|||||++||+||++|+++|++|+|+|++..+||..
T Consensus        24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~   64 (257)
T PRK04176         24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGM   64 (257)
T ss_pred             ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCcc
Confidence            36899999999999999999999999999999999999864

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=98.66  E-value=2.6e-08  Score=99.42  Aligned_cols=40  Identities=30%  Similarity=0.507  Sum_probs=37.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (416)
                      .+|||||||||++|++||+.|+++|++|+|||+++.+|..
T Consensus         4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k   43 (428)
T PRK10157          4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAK   43 (428)
T ss_pred             ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCc
Confidence            4699999999999999999999999999999999988764

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.65  E-value=2.6e-08  Score=100.49  Aligned_cols=46  Identities=24%  Similarity=0.306  Sum_probs=42.2

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccccc
Q 014883           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (416)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~   64 (416)
                      .+.+|||+|||||.+|+.||..|++.|++|+++|+++.+||.|...
T Consensus         2 ~~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~   47 (461)
T PRK05249          2 HMYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHT   47 (461)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCEEEEEecccccccccccc
Confidence            3567999999999999999999999999999999999999988544

>PRK10015 oxidoreductase; Provisional

Probab=98.62  E-value=3.6e-08  Score=98.29  Aligned_cols=40  Identities=30%  Similarity=0.488  Sum_probs=36.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (416)
                      .+|||||||||++|++||+.|+++|++|+|+|+++.+|-.
T Consensus         4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k   43 (429)
T PRK10015          4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCK   43 (429)
T ss_pred             cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcc
Confidence            4699999999999999999999999999999999887643

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.61  E-value=3.4e-08  Score=99.69  Aligned_cols=45  Identities=18%  Similarity=0.277  Sum_probs=41.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~   64 (416)
                      |.+|||||||+|.+|++||.++++.|++|+++|+++.+||.|...
T Consensus         1 m~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~   45 (466)
T PRK06115          1 MASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNV   45 (466)
T ss_pred             CCcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccC
Confidence            346999999999999999999999999999999989999988543

>PRK07121 hypothetical protein; Validated

Probab=98.61  E-value=5.6e-08  Score=98.86  Aligned_cols=42  Identities=26%  Similarity=0.363  Sum_probs=39.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (416)
                      .++||||||+|.+||+||+.++++|.+|+||||....||...
T Consensus        19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~s~   60 (492)
T PRK07121         19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGATA   60 (492)
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCccc
Confidence            468999999999999999999999999999999999998653

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=98.59  E-value=5.3e-08  Score=97.60  Aligned_cols=44  Identities=18%  Similarity=0.264  Sum_probs=40.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      ....+|+|||||.+||+||..|+++|++|+|+|+++.+||.|.-
T Consensus         8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~   51 (461)
T PLN02172          8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVY   51 (461)
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeec
Confidence            34579999999999999999999999999999999999998864

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.58  E-value=6.1e-08  Score=96.44  Aligned_cols=45  Identities=22%  Similarity=0.485  Sum_probs=40.0

Q ss_pred             CCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883           13 PPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (416)
Q Consensus        13 ~~~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (416)
                      |..|..+...+||+|||||++||++|..|+++|++|+|+|+++..
T Consensus         9 ~~~~~~~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   53 (415)
T PRK07364          9 PTLPSTRSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE   53 (415)
T ss_pred             CCCCCCCccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence            455666666799999999999999999999999999999999865

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=98.58  E-value=1.2e-06  Score=87.71  Aligned_cols=58  Identities=31%  Similarity=0.423  Sum_probs=49.4

Q ss_pred             EEeecCCc---chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE
Q 014883          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV  331 (416)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI  331 (416)
                      .+.|.-|.   ..++++|++.|..+|+.|.-|++|++|...  +++.++|++.-| .|+|.+||
T Consensus       176 Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~--~~~~~gVeT~~G-~iet~~~V  236 (856)
T KOG2844|consen  176 LYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVE--TDKFGGVETPHG-SIETECVV  236 (856)
T ss_pred             eecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEee--cCCccceeccCc-ceecceEE
Confidence            55677773   589999999999999999999999999987  566679997666 69999988

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.55  E-value=6.3e-08  Score=97.15  Aligned_cols=44  Identities=16%  Similarity=0.375  Sum_probs=39.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC-CCCCcccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP-FYGSHFSS   63 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~-~~GG~~~s   63 (416)
                      |++|||||||||.+|+.||.+|+++|++|+|+|+.+ .+||.|..
T Consensus         1 ~~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~   45 (441)
T PRK08010          1 MNKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCIN   45 (441)
T ss_pred             CCcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEee
Confidence            356999999999999999999999999999999986 48998864

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=98.55  E-value=7.1e-08  Score=96.27  Aligned_cols=49  Identities=16%  Similarity=0.209  Sum_probs=44.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCe-EEEEccCCCCCCcccccChhh
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKS-VLHLDPNPFYGSHFSSLSIAD   68 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~-V~vlE~~~~~GG~~~s~~~~~   68 (416)
                      ++.+||+|||||++||++|++|.++|.. ++||||++++||.++....++
T Consensus         6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~   55 (443)
T COG2072           6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPG   55 (443)
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCc
Confidence            5678999999999999999999999999 999999999999988866544

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=98.54  E-value=6.8e-08  Score=93.50  Aligned_cols=36  Identities=19%  Similarity=0.350  Sum_probs=31.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (416)
                      ++||||||||++||++|..|+++|++|+|+|+++..
T Consensus         1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~   36 (356)
T PF01494_consen    1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP   36 (356)
T ss_dssp             EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred             CceEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence            489999999999999999999999999999998764

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.54  E-value=7.4e-08  Score=96.58  Aligned_cols=43  Identities=30%  Similarity=0.512  Sum_probs=39.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC-CCCcccc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF-YGSHFSS   63 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~-~GG~~~s   63 (416)
                      .+|||||||||.+|++||..|++.|++|+|+|+++. +||.|..
T Consensus         2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~   45 (438)
T PRK07251          2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCIN   45 (438)
T ss_pred             CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeec
Confidence            469999999999999999999999999999999875 7997643

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=98.54  E-value=9.3e-08  Score=95.70  Aligned_cols=43  Identities=12%  Similarity=0.178  Sum_probs=37.6

Q ss_pred             CCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           14 PYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        14 ~~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      .-+++...+|||+|||||++|++||+.|+++|++|+|+|++..
T Consensus        31 ~~~~~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~   73 (450)
T PLN00093         31 ASKKLSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD   73 (450)
T ss_pred             CCCCcCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            3445556679999999999999999999999999999999853

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.52  E-value=9.4e-08  Score=96.58  Aligned_cols=44  Identities=14%  Similarity=0.180  Sum_probs=40.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      +.+|||||||||.+|+.||.+|++.|++|+++|+++.+||.|..
T Consensus         2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n   45 (471)
T PRK06467          2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLN   45 (471)
T ss_pred             CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccC
Confidence            45799999999999999999999999999999999999997754

>PRK06370 mercuric reductase; Validated

Probab=98.52  E-value=1e-07  Score=96.25  Aligned_cols=45  Identities=24%  Similarity=0.403  Sum_probs=40.3

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccccc
Q 014883           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (416)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~   64 (416)
                      ||.+|||||||+|.+|++||.+|++.|++|+++|+. .+||.|...
T Consensus         2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~   46 (463)
T PRK06370          2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCVNT   46 (463)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCceecc
Confidence            567899999999999999999999999999999986 678877643

>PTZ00058 glutathione reductase; Provisional

Probab=98.52  E-value=1.3e-07  Score=96.91  Aligned_cols=54  Identities=20%  Similarity=0.329  Sum_probs=46.4

Q ss_pred             CCCCC-CCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccccc
Q 014883           10 LPVPP-YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (416)
Q Consensus        10 ~~~~~-~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~   64 (416)
                      -|+|+ +++....+|||||||||.+|++||..+++.|++|+++|++ .+||.|-.+
T Consensus        35 ~~~~~~~~~~~~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln~   89 (561)
T PTZ00058         35 SSAPTHLKKKPRMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVNV   89 (561)
T ss_pred             cCcccccccCCCccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-ccccccccc
Confidence            46676 6655556799999999999999999999999999999996 799988653

>PRK06116 glutathione reductase; Validated

Probab=98.52  E-value=8.4e-08  Score=96.51  Aligned_cols=43  Identities=26%  Similarity=0.359  Sum_probs=39.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      +.+|||||||||.+|++||..|++.|++|+|+|++ .+||.|..
T Consensus         2 ~~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n   44 (450)
T PRK06116          2 TKDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVN   44 (450)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhc
Confidence            34699999999999999999999999999999995 89998754

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=98.51  E-value=9.6e-08  Score=95.30  Aligned_cols=41  Identities=29%  Similarity=0.453  Sum_probs=34.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccccc
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~   64 (416)
                      ||||||||++|++||+.+|++|.+|+++|+.+.+||...+-
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~   41 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSG   41 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGS
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceEC
Confidence            89999999999999999999999999999999999987653

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=98.51  E-value=1.2e-07  Score=96.54  Aligned_cols=43  Identities=28%  Similarity=0.404  Sum_probs=38.7

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (416)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (416)
                      |+..|||||||||++|+++|+.|+++|++|+|+|+++..+|..
T Consensus         3 ~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS   45 (508)
T PRK12266          3 MMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATS   45 (508)
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcc
Confidence            3457999999999999999999999999999999998776655

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.50  E-value=1.1e-07  Score=96.01  Aligned_cols=43  Identities=28%  Similarity=0.366  Sum_probs=39.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      |.+|||||||||.+|++||.+|++.|++|+|+|+ +.+||.|..
T Consensus         1 m~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~   43 (460)
T PRK06292          1 MEKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLN   43 (460)
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Cccccceec
Confidence            3569999999999999999999999999999999 789998764

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.50  E-value=1.2e-07  Score=93.39  Aligned_cols=40  Identities=33%  Similarity=0.471  Sum_probs=36.5

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (416)
Q Consensus        18 ~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (416)
                      ++|..+||||||||++||++|+.|+++|++|+|+|+++.+
T Consensus         3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~   42 (388)
T PRK07494          3 MEKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPY   42 (388)
T ss_pred             CCCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence            3466789999999999999999999999999999999765

>PLN02463 lycopene beta cyclase

Probab=98.49  E-value=1.5e-07  Score=93.84  Aligned_cols=48  Identities=29%  Similarity=0.627  Sum_probs=43.8

Q ss_pred             cCCCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883            9 ELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus         9 ~~~~~~~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      ..+.|++.+.....|||||||||++||++|+.|+++|++|+|+|+++.
T Consensus        15 ~~~~~~~~~~~~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~   62 (447)
T PLN02463         15 DFELPRFDPSKSRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPL   62 (447)
T ss_pred             cccccCCCCccccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCcc
Confidence            567788888878889999999999999999999999999999999764

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.49  E-value=1.3e-07  Score=89.13  Aligned_cols=37  Identities=24%  Similarity=0.430  Sum_probs=35.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      |||+|||||++||++|+.|++.|.+|+|+|++..++.
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~   37 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY   37 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence            7999999999999999999999999999999988765

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.49  E-value=1.3e-07  Score=95.58  Aligned_cols=42  Identities=26%  Similarity=0.425  Sum_probs=39.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccccc
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~   64 (416)
                      .|||||||||++|+.||..|++.|++|+|+|+ +.+||.|...
T Consensus         1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~   42 (461)
T TIGR01350         1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNV   42 (461)
T ss_pred             CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeec
Confidence            38999999999999999999999999999999 8999988653

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=98.48  E-value=2.2e-06  Score=85.73  Aligned_cols=61  Identities=20%  Similarity=0.180  Sum_probs=48.4

Q ss_pred             EeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCC-CcEEEcCEEEE
Q 014883          272 IYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS-GQDILSHKLVL  332 (416)
Q Consensus       272 ~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~-G~~i~Ad~VI~  332 (416)
                      .++.++...+.++|.+.++++|++|+++++|++|+.+++++++++|...+ +.+++|+.||+
T Consensus       116 ~~~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIl  177 (432)
T TIGR02485       116 AFLRGGGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVL  177 (432)
T ss_pred             eeecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEE
Confidence            35566677899999999999999999999999998752146777876543 35899999994

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.47  E-value=1.6e-07  Score=94.86  Aligned_cols=44  Identities=20%  Similarity=0.388  Sum_probs=39.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~   64 (416)
                      +.+|||||||+|.+|++||.+|++.|++|+++|++ .+||.|...
T Consensus         2 ~~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~~   45 (466)
T PRK07818          2 MTHYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLNV   45 (466)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceecC
Confidence            45699999999999999999999999999999985 789988654

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=98.47  E-value=2.5e-07  Score=94.31  Aligned_cols=43  Identities=19%  Similarity=0.374  Sum_probs=39.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (416)
                      +.++||||||+|.+||+||+.++++|.+|+||||.+..||...
T Consensus        59 ~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~  101 (506)
T PRK06481         59 KDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTM  101 (506)
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCccc
Confidence            3478999999999999999999999999999999999998643

>PRK08013 oxidoreductase; Provisional

Probab=98.47  E-value=1.5e-07  Score=93.25  Aligned_cols=38  Identities=18%  Similarity=0.273  Sum_probs=35.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (416)
                      |+++||+|||||++||++|+.|+++|++|+|+|+++..
T Consensus         1 m~~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~   38 (400)
T PRK08013          1 MQSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPE   38 (400)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCc
Confidence            34689999999999999999999999999999999864

>PRK09126 hypothetical protein; Provisional

Probab=98.46  E-value=1.5e-07  Score=92.83  Aligned_cols=37  Identities=22%  Similarity=0.403  Sum_probs=34.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (416)
                      ++||||||||++||++|..|+++|++|+|+|+++.+.
T Consensus         3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~   39 (392)
T PRK09126          3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAA   39 (392)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCccc
Confidence            6999999999999999999999999999999998753

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.46  E-value=1.4e-07  Score=94.75  Aligned_cols=41  Identities=27%  Similarity=0.354  Sum_probs=38.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      +|||||||+|.+|++||.++++.|++|+++|+ +.+||.|..
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~~   42 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCVI   42 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceeec
Confidence            59999999999999999999999999999999 589998874

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=98.45  E-value=1.9e-07  Score=92.86  Aligned_cols=40  Identities=23%  Similarity=0.297  Sum_probs=36.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (416)
                      +||||||||+.|+++|+.|+++|++|+||||++.+|+-++
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~~~~as   41 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAAMETS   41 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCcCcc
Confidence            6999999999999999999999999999999988775443

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.45  E-value=1.9e-07  Score=94.46  Aligned_cols=44  Identities=20%  Similarity=0.280  Sum_probs=40.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~   64 (416)
                      ...|||||||||.+|++||.+|++.|++|+++|+. .+||.|...
T Consensus         2 ~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~   45 (472)
T PRK05976          2 AKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHK   45 (472)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcC
Confidence            34799999999999999999999999999999996 899998653

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.44  E-value=2.2e-07  Score=94.64  Aligned_cols=44  Identities=32%  Similarity=0.481  Sum_probs=38.5

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (416)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (416)
                      |+.+|||||||||++|+++|+.|+++|++|+|||+++..+|...
T Consensus         3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~GtS~   46 (502)
T PRK13369          3 EPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSS   46 (502)
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCCch
Confidence            45679999999999999999999999999999999986555443

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.44  E-value=1.9e-07  Score=93.85  Aligned_cols=41  Identities=22%  Similarity=0.352  Sum_probs=38.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      +|||||||||.+|++||..|++.|++|+++|+. .+||.|..
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~~   42 (450)
T TIGR01421         2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCVN   42 (450)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-ccccceec
Confidence            599999999999999999999999999999995 79998754

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK07045 putative monooxygenase; Reviewed

Probab=98.43  E-value=2.1e-07  Score=91.76  Aligned_cols=38  Identities=18%  Similarity=0.330  Sum_probs=35.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (416)
                      +..+||+|||||++||++|..|+++|++|+|+|+++..
T Consensus         3 ~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~   40 (388)
T PRK07045          3 NNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN   40 (388)
T ss_pred             CceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence            46789999999999999999999999999999999864

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.43  E-value=2e-07  Score=91.76  Aligned_cols=36  Identities=19%  Similarity=0.403  Sum_probs=33.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      |+.+||+|||||++||++|+.|++.|++|+|+|+++
T Consensus         1 ~~~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~   36 (384)
T PRK08849          1 MNKYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE   36 (384)
T ss_pred             CCcccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            345899999999999999999999999999999875

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=98.43  E-value=2e-07  Score=92.48  Aligned_cols=36  Identities=19%  Similarity=0.298  Sum_probs=33.7

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 014883           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (416)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (416)
                      ||..+||+|||||++||++|+.|+++|++|+|+|++
T Consensus         1 ~m~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~   36 (405)
T PRK08850          1 MMQSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ   36 (405)
T ss_pred             CCCcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence            456789999999999999999999999999999996

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.43  E-value=2.1e-07  Score=93.98  Aligned_cols=43  Identities=26%  Similarity=0.333  Sum_probs=39.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccccc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~   64 (416)
                      .+|||||||||.+|++||..|++.|++|+++|++. +||.|...
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~   45 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNR   45 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeec
Confidence            36999999999999999999999999999999987 99987653

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=98.43  E-value=2.4e-07  Score=91.54  Aligned_cols=52  Identities=17%  Similarity=0.185  Sum_probs=41.1

Q ss_pred             hHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE-ECC
Q 014883          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDP  334 (416)
Q Consensus       280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI-~~p  334 (416)
                      .+.+.|.+.++..|++++.+++|++++.+  ++. +.|++++|++++||.|| ++.
T Consensus       114 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~--~~~-v~v~~~~g~~~~a~~vV~AdG  166 (392)
T PRK08773        114 LLVDRLWAALHAAGVQLHCPARVVALEQD--ADR-VRLRLDDGRRLEAALAIAADG  166 (392)
T ss_pred             HHHHHHHHHHHhCCCEEEcCCeEEEEEec--CCe-EEEEECCCCEEEeCEEEEecC
Confidence            56667777777789999999999999876  443 45777888899999999 443

>PLN02661 Putative thiazole synthesis

Probab=98.42  E-value=2.3e-07  Score=88.35  Aligned_cols=41  Identities=15%  Similarity=0.148  Sum_probs=37.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhC-CCeEEEEccCCCCCCccc
Q 014883           22 AFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFYGSHFS   62 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~-G~~V~vlE~~~~~GG~~~   62 (416)
                      ++||+|||+|++||+||+.|+++ |++|+|+|++..+||..+
T Consensus        92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~  133 (357)
T PLN02661         92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAW  133 (357)
T ss_pred             cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccccccee
Confidence            58999999999999999999986 999999999999988544

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=98.41  E-value=2e-07  Score=92.90  Aligned_cols=55  Identities=25%  Similarity=0.387  Sum_probs=46.5

Q ss_pred             CcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeC---CCc--EEEcCEEEEC
Q 014883          277 GQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SGQ--DILSHKLVLD  333 (416)
Q Consensus       277 G~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~---~G~--~i~Ad~VI~~  333 (416)
                      +...+.+.|.+.++++|++|+++++|++++++  ++++++|...   +|+  +|+|+.||+.
T Consensus       139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e--~g~V~Gv~~~~~~~g~~~~i~A~aVIlA  198 (417)
T PF00890_consen  139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITE--DGRVTGVVAENPADGEFVRIKAKAVILA  198 (417)
T ss_dssp             HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEE--TTEEEEEEEEETTTCEEEEEEESEEEE-
T ss_pred             cHHHHHHHHHHHHhhcCeeeeccceeeeEEEe--CCceeEEEEEECCCCeEEEEeeeEEEec
Confidence            45678899999999999999999999999998  7899998876   454  4789999943

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK12831 putative oxidoreductase; Provisional

Probab=98.41  E-value=3.5e-07  Score=92.13  Aligned_cols=46  Identities=17%  Similarity=0.143  Sum_probs=41.5

Q ss_pred             CCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883           17 PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (416)
Q Consensus        17 ~~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (416)
                      +......||+|||||++||+||.+|++.|++|+|+|+++.+||.+.
T Consensus       135 ~~~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~  180 (464)
T PRK12831        135 TEEKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV  180 (464)
T ss_pred             CcCCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence            3344568999999999999999999999999999999999999875

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.41  E-value=2.6e-07  Score=94.13  Aligned_cols=41  Identities=32%  Similarity=0.468  Sum_probs=37.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccC-CCCCCc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN-PFYGSH   60 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~-~~~GG~   60 (416)
                      +.+|||||||||++|+.||..+|+.|.+|+++|++ +.+|++
T Consensus         2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m   43 (618)
T PRK05192          2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQM   43 (618)
T ss_pred             CccceEEEECchHHHHHHHHHHHHcCCcEEEEeccccccccc
Confidence            45699999999999999999999999999999998 577764

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=98.41  E-value=3.4e-07  Score=98.49  Aligned_cols=44  Identities=18%  Similarity=0.216  Sum_probs=40.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      .+.+||+|||||.+||+||..|++.|++|+|+|+++.+||.++.
T Consensus       535 ~~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~  578 (1012)
T TIGR03315       535 SSAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKN  578 (1012)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeee
Confidence            34589999999999999999999999999999999999999864

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=98.41  E-value=1.9e-07  Score=83.24  Aligned_cols=39  Identities=23%  Similarity=0.314  Sum_probs=32.9

Q ss_pred             EEECCChhHHHHHHHHhhCCCe-EEEEccCCCCCCccccc
Q 014883           26 IVIGTGLPESVISAAASASGKS-VLHLDPNPFYGSHFSSL   64 (416)
Q Consensus        26 iIIGaGl~GL~aA~~La~~G~~-V~vlE~~~~~GG~~~s~   64 (416)
                      +|||||++||++|+.|.++|.+ |+|||+++.+||.+..+
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~   40 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRY   40 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEe
Confidence            7999999999999999999999 99999999999998753

...

>PRK07236 hypothetical protein; Provisional

Probab=98.40  E-value=3e-07  Score=90.57  Aligned_cols=37  Identities=19%  Similarity=0.168  Sum_probs=34.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      |..+||+|||||++||++|..|+++|++|+|+|+++.
T Consensus         4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (386)
T PRK07236          4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT   40 (386)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            5568999999999999999999999999999999864

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=98.39  E-value=3.2e-07  Score=94.48  Aligned_cols=42  Identities=36%  Similarity=0.472  Sum_probs=39.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC--CCCCccc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP--FYGSHFS   62 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~--~~GG~~~   62 (416)
                      .++||||||+|.+||+||+.++++|.+|+||||.+  .+||.+.
T Consensus         3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~   46 (549)
T PRK12834          3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAF   46 (549)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCcee
Confidence            46899999999999999999999999999999999  8899654

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.39  E-value=3.5e-07  Score=92.63  Aligned_cols=45  Identities=27%  Similarity=0.437  Sum_probs=40.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEcc------CCCCCCccccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDP------NPFYGSHFSSL   64 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~------~~~~GG~~~s~   64 (416)
                      ..+||+||||+|.+|++||.+|++.|++|+|+|+      +..+||.|...
T Consensus         2 ~~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~   52 (475)
T PRK06327          2 SKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNV   52 (475)
T ss_pred             CcceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccc
Confidence            3469999999999999999999999999999998      47889988654

>PRK06184 hypothetical protein; Provisional

Probab=98.39  E-value=3.3e-07  Score=93.53  Aligned_cols=46  Identities=20%  Similarity=0.293  Sum_probs=39.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC--CCcccccC
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY--GSHFSSLS   65 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~--GG~~~s~~   65 (416)
                      |+++||+|||||++||++|+.|++.|.+|+|+|+++.+  .++...+.
T Consensus         1 ~~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~   48 (502)
T PRK06184          1 YTTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQ   48 (502)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeec
Confidence            45689999999999999999999999999999999876  45555444

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=98.39  E-value=2.8e-07  Score=90.88  Aligned_cols=32  Identities=22%  Similarity=0.429  Sum_probs=31.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (416)
                      |||||||||++|++||+.|+++|++|+|+|++
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~   32 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGIETILLERA   32 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence            79999999999999999999999999999998

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.39  E-value=3.1e-07  Score=94.67  Aligned_cols=43  Identities=21%  Similarity=0.353  Sum_probs=38.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      ...|||||||||.+||+||.+|+++|++|+|+|++ .+||.+..
T Consensus         2 ~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~   44 (555)
T TIGR03143         2 EEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITI   44 (555)
T ss_pred             CCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEe
Confidence            34599999999999999999999999999999995 78998653

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK08163 salicylate hydroxylase; Provisional

Probab=98.38  E-value=3.3e-07  Score=90.58  Aligned_cols=38  Identities=18%  Similarity=0.283  Sum_probs=34.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (416)
                      ...||+|||||++||++|..|+++|++|+|+|+++.++
T Consensus         3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~   40 (396)
T PRK08163          3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIG   40 (396)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccc
Confidence            45799999999999999999999999999999997654

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.38  E-value=3.3e-07  Score=86.73  Aligned_cols=40  Identities=20%  Similarity=0.371  Sum_probs=36.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      |||+|||||++||+||..|++.|++|+|+|+++ +||.+..
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~   40 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTT   40 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceee
Confidence            699999999999999999999999999999987 7886654

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>TIGR02028 ChlP geranylgeranyl reductase

Probab=98.37  E-value=3.8e-07  Score=90.17  Aligned_cols=39  Identities=15%  Similarity=0.287  Sum_probs=34.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (416)
                      +||||||||++|++||+.|+++|++|+|+|++...+..|
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~c   39 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPC   39 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCc
Confidence            599999999999999999999999999999987654433

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=98.36  E-value=3.9e-07  Score=91.43  Aligned_cols=38  Identities=26%  Similarity=0.521  Sum_probs=36.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCC-CeEEEEccCCCCCCcc
Q 014883           24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGSHF   61 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G-~~V~vlE~~~~~GG~~   61 (416)
                      ||||||+|++||+||+.++++| .+|+||||.+..||.+
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s   39 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNS   39 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcc
Confidence            8999999999999999999999 9999999999998864

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK14694 putative mercuric reductase; Provisional

Probab=98.36  E-value=4.2e-07  Score=91.86  Aligned_cols=43  Identities=19%  Similarity=0.290  Sum_probs=39.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      ...|||||||||.+|++||..|++.|++|+++|++ .+||-|..
T Consensus         4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n   46 (468)
T PRK14694          4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVN   46 (468)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceec
Confidence            45799999999999999999999999999999986 79998864

>PRK13748 putative mercuric reductase; Provisional

Probab=98.36  E-value=3.8e-07  Score=94.45  Aligned_cols=43  Identities=19%  Similarity=0.284  Sum_probs=39.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccccc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~   64 (416)
                      .+|||||||||.+|++||..|++.|++|+|+|++ .+||-|...
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~  139 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNV  139 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeecccc
Confidence            4699999999999999999999999999999997 899988653

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=98.36  E-value=3.6e-07  Score=88.17  Aligned_cols=44  Identities=20%  Similarity=0.367  Sum_probs=41.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS   65 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~   65 (416)
                      .-++.|||||++|++||..|++.|++|.++|+++.+||+...+.
T Consensus       124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~  167 (622)
T COG1148         124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLN  167 (622)
T ss_pred             ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhh
Confidence            35899999999999999999999999999999999999987765

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.35  E-value=4e-07  Score=90.07  Aligned_cols=45  Identities=18%  Similarity=0.206  Sum_probs=41.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~   64 (416)
                      +...+|+|||||.+||++|+.|.+.|++|+|+||.+.+||.+.--
T Consensus         4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~   48 (448)
T KOG1399|consen    4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYT   48 (448)
T ss_pred             CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeec
Confidence            445699999999999999999999999999999999999998764

>PRK12839 hypothetical protein; Provisional

Probab=98.35  E-value=5.2e-07  Score=93.06  Aligned_cols=48  Identities=23%  Similarity=0.368  Sum_probs=42.9

Q ss_pred             CCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           16 PPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        16 ~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      .|.+..++||||||+|.+||+||+.|+++|.+|+|+||+..+||.+..
T Consensus         2 ~~~~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~   49 (572)
T PRK12839          2 TPSMTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATAW   49 (572)
T ss_pred             CCCcCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCccccc
Confidence            344556799999999999999999999999999999999999998753

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=98.35  E-value=4.1e-07  Score=89.78  Aligned_cols=37  Identities=19%  Similarity=0.306  Sum_probs=34.2

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      ...|||+|||||++||++|+.|+++|++|+|+|++..
T Consensus         3 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~   39 (391)
T PRK08020          3 NQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAP   39 (391)
T ss_pred             cccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCC
Confidence            4569999999999999999999999999999999763

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=98.35  E-value=4.4e-07  Score=92.66  Aligned_cols=40  Identities=23%  Similarity=0.329  Sum_probs=37.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (416)
                      .++||||||+| +||+||+.++++|.+|+||||.+..||.+
T Consensus         6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t   45 (513)
T PRK12837          6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTT   45 (513)
T ss_pred             CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcce
Confidence            37899999999 99999999999999999999999989865

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=98.34  E-value=4.2e-07  Score=89.32  Aligned_cols=35  Identities=20%  Similarity=0.455  Sum_probs=33.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (416)
                      ||+|||||++||++|..|+++|++|+|+|++..++
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~   35 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEA   35 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccc
Confidence            89999999999999999999999999999998765

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=98.34  E-value=4.8e-07  Score=89.19  Aligned_cols=37  Identities=32%  Similarity=0.469  Sum_probs=34.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (416)
                      .+||+|||||++||++|+.|++.|++|+|+|+++.+.
T Consensus         5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~   41 (388)
T PRK07608          5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPR   41 (388)
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCcc
Confidence            5799999999999999999999999999999998754

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=98.34  E-value=5.3e-07  Score=88.75  Aligned_cols=59  Identities=32%  Similarity=0.363  Sum_probs=45.9

Q ss_pred             EEeecCCc---chHHHHHHHHHHhcC-cEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883          271 LIYPIYGQ---GELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (416)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~G-g~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (416)
                      +..+..|.   ..+.++|++.++++| ..+..+++|..+..+  . +.++|.+.+|. ++||+||+.
T Consensus       145 ~~~~~~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~--~-~~~~v~t~~g~-i~a~~vv~a  207 (387)
T COG0665         145 LFDPTGGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERD--G-RVVGVETDGGT-IEADKVVLA  207 (387)
T ss_pred             EecCCCCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEec--C-cEEEEEeCCcc-EEeCEEEEc
Confidence            45666664   578899999999999 566669999999864  3 66789877776 999999953

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=98.34  E-value=3.9e-07  Score=86.38  Aligned_cols=39  Identities=36%  Similarity=0.625  Sum_probs=33.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCC-CeEEEEccCCCCCCcc
Q 014883           23 FDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGSHF   61 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G-~~V~vlE~~~~~GG~~   61 (416)
                      |||||||+|.+|+++|.+|+++| ++|+|||+.++.....
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~   40 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPED   40 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSG
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCcccc
Confidence            89999999999999999999998 7999999998776655

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=98.34  E-value=5.5e-07  Score=93.24  Aligned_cols=44  Identities=25%  Similarity=0.433  Sum_probs=40.5

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (416)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (416)
                      ...++||||||+|.+||+||+.++++|.+|+||||.+..||.+.
T Consensus         6 ~~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~   49 (574)
T PRK12842          6 NELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTA   49 (574)
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCccc
Confidence            34578999999999999999999999999999999999998865

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.33  E-value=5.3e-07  Score=85.14  Aligned_cols=46  Identities=20%  Similarity=0.278  Sum_probs=38.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccC
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS   65 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~   65 (416)
                      +..|||||||||++||+||.+++++|.++.|++....+||......
T Consensus         1 ~~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~   46 (305)
T COG0492           1 MKIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTT   46 (305)
T ss_pred             CceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccce
Confidence            3579999999999999999999999999666666678887776654

>PLN02697 lycopene epsilon cyclase

Probab=98.33  E-value=7.8e-07  Score=90.29  Aligned_cols=49  Identities=27%  Similarity=0.466  Sum_probs=40.4

Q ss_pred             CCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883           11 PVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (416)
Q Consensus        11 ~~~~~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (416)
                      +-|+++ .....|||||||||++||++|..|+++|++|+++|+....+..
T Consensus        98 ~~~~~~-~~~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n  146 (529)
T PLN02697         98 KLPPIS-IGDGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN  146 (529)
T ss_pred             cCCCCC-cccCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCc
Confidence            445565 4556799999999999999999999999999999987555433

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.32  E-value=7.7e-07  Score=95.45  Aligned_cols=44  Identities=16%  Similarity=0.175  Sum_probs=40.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      .+..+|+|||||.+||+||..|++.|++|+|+|+++.+||.++.
T Consensus       537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~  580 (1019)
T PRK09853        537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN  580 (1019)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee
Confidence            45679999999999999999999999999999999999998764

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.32  E-value=5.6e-07  Score=88.73  Aligned_cols=37  Identities=30%  Similarity=0.432  Sum_probs=34.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (416)
                      ||||||||++||++|+.|+++|++|+|||+++..||.
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~   37 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGN   37 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCC
Confidence            8999999999999999999999999999999887764

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.32  E-value=5e-07  Score=89.64  Aligned_cols=52  Identities=13%  Similarity=0.093  Sum_probs=39.8

Q ss_pred             hHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE-ECC
Q 014883          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDP  334 (416)
Q Consensus       280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI-~~p  334 (416)
                      .+-++|.+.++..|.+|+.++.|++|..+  ++. +.|++.+|++++||.|| ++.
T Consensus       113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~--~~~-v~v~~~~g~~~~a~~vVgAdG  165 (405)
T PRK05714        113 VVQDALLERLHDSDIGLLANARLEQMRRS--GDD-WLLTLADGRQLRAPLVVAADG  165 (405)
T ss_pred             HHHHHHHHHHhcCCCEEEcCCEEEEEEEc--CCe-EEEEECCCCEEEeCEEEEecC
Confidence            45556666666778999999999999876  333 56777888899999999 553

>PRK06185 hypothetical protein; Provisional

Probab=98.31  E-value=5.8e-07  Score=89.19  Aligned_cols=37  Identities=16%  Similarity=0.219  Sum_probs=34.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      ..++||+|||||++||++|+.|+++|++|+|+|+++.
T Consensus         4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~   40 (407)
T PRK06185          4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD   40 (407)
T ss_pred             cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            4569999999999999999999999999999999864

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.31  E-value=5.6e-07  Score=88.88  Aligned_cols=36  Identities=22%  Similarity=0.408  Sum_probs=33.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhC---CCeEEEEccCC
Q 014883           20 PTAFDLIVIGTGLPESVISAAASAS---GKSVLHLDPNP   55 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~---G~~V~vlE~~~   55 (416)
                      |..+||+|||||++||++|+.|+++   |++|+|+|++.
T Consensus         1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~   39 (395)
T PRK05732          1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFA   39 (395)
T ss_pred             CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCC
Confidence            4568999999999999999999998   99999999963

>TIGR02053 MerA mercuric reductase

Probab=98.31  E-value=6.1e-07  Score=90.65  Aligned_cols=40  Identities=28%  Similarity=0.520  Sum_probs=37.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      |||||||||.+|++||.+|++.|++|+++|+.. +||.|-.
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n   40 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVN   40 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeee
Confidence            799999999999999999999999999999975 8888754

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK06834 hypothetical protein; Provisional

Probab=98.31  E-value=6.8e-07  Score=90.63  Aligned_cols=46  Identities=20%  Similarity=0.321  Sum_probs=38.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC---CCCcccccC
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF---YGSHFSSLS   65 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~---~GG~~~s~~   65 (416)
                      |+++||||||||++||++|+.|+++|.+|+|+|+++.   .|.+...+.
T Consensus         1 ~~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~   49 (488)
T PRK06834          1 MTEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLH   49 (488)
T ss_pred             CCcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeEC
Confidence            4568999999999999999999999999999999875   344554443

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.30  E-value=8.9e-07  Score=93.12  Aligned_cols=43  Identities=19%  Similarity=0.287  Sum_probs=40.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (416)
                      .+..+|+|||+|.+||+||..|++.|++|+|+|+++.+||..+
T Consensus       325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~  367 (654)
T PRK12769        325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLT  367 (654)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceee
Confidence            4567999999999999999999999999999999999999865

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=98.30  E-value=7.3e-07  Score=87.15  Aligned_cols=34  Identities=29%  Similarity=0.460  Sum_probs=32.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      +||+|||||+.||++|+.|+++|++|+|||++..
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~   34 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR   34 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            6999999999999999999999999999999875

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PLN02985 squalene monooxygenase

Probab=98.30  E-value=8.5e-07  Score=90.29  Aligned_cols=40  Identities=23%  Similarity=0.341  Sum_probs=35.7

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (416)
Q Consensus        18 ~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (416)
                      .....+||||||||++||++|+.|+++|++|+|+|+....
T Consensus        39 ~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~   78 (514)
T PLN02985         39 RKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLRE   78 (514)
T ss_pred             CcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCC
Confidence            3455789999999999999999999999999999998643

>PRK14727 putative mercuric reductase; Provisional

Probab=98.30  E-value=6.3e-07  Score=90.83  Aligned_cols=44  Identities=16%  Similarity=0.277  Sum_probs=41.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccccc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~   64 (416)
                      ..|||||||+|.+|++||..|++.|++|+++|+++.+||.|...
T Consensus        15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~   58 (479)
T PRK14727         15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNV   58 (479)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccc
Confidence            46899999999999999999999999999999999999998753

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=98.29  E-value=9.4e-07  Score=88.77  Aligned_cols=45  Identities=20%  Similarity=0.207  Sum_probs=40.9

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (416)
Q Consensus        18 ~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (416)
                      ..+..+||+|||+|++||+||..|++.|++|+|+|+++.+||.+.
T Consensus       129 ~~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~  173 (449)
T TIGR01316       129 APSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVT  173 (449)
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee
Confidence            345568999999999999999999999999999999999999764

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK06847 hypothetical protein; Provisional

Probab=98.29  E-value=7.5e-07  Score=87.34  Aligned_cols=37  Identities=16%  Similarity=0.309  Sum_probs=34.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (416)
                      ...||+|||||++||++|..|++.|++|+|+|+++.+
T Consensus         3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~   39 (375)
T PRK06847          3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEW   39 (375)
T ss_pred             CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            4579999999999999999999999999999998764

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.29  E-value=7.3e-07  Score=88.55  Aligned_cols=45  Identities=22%  Similarity=0.330  Sum_probs=42.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~   64 (416)
                      +.+||+||||+|.+|..||.++++.|++|+++|+..++||-|-.+
T Consensus         2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~   46 (454)
T COG1249           2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNV   46 (454)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEee
Confidence            567999999999999999999999999999999999999999765

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.29  E-value=7.4e-07  Score=96.51  Aligned_cols=43  Identities=14%  Similarity=0.149  Sum_probs=40.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (416)
                      ....+|+|||+|++||+||..|+++|++|+|+|+++++||..+
T Consensus       304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~  346 (944)
T PRK12779        304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR  346 (944)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE
Confidence            3467999999999999999999999999999999999999865

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=98.29  E-value=6.5e-07  Score=88.34  Aligned_cols=35  Identities=14%  Similarity=0.234  Sum_probs=33.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      .+||+|||||++||++|+.|+++|++|+|+|+++.
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~   36 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR   36 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            37999999999999999999999999999999984

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=98.27  E-value=9.1e-07  Score=81.65  Aligned_cols=43  Identities=35%  Similarity=0.443  Sum_probs=37.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC--CCCCccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP--FYGSHFS   62 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~--~~GG~~~   62 (416)
                      +.++||||||||++||.||+.||.+|++|++||+..  .+||.+.
T Consensus         3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQAf   47 (552)
T COG3573           3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQAF   47 (552)
T ss_pred             cccccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccceee
Confidence            457899999999999999999999999999999865  4677653

>PRK07190 hypothetical protein; Provisional

Probab=98.27  E-value=8.6e-07  Score=89.79  Aligned_cols=46  Identities=15%  Similarity=0.176  Sum_probs=39.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC--CCcccccC
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY--GSHFSSLS   65 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~--GG~~~s~~   65 (416)
                      +..+||+|||||++||++|+.|+++|.+|+|+|+++.+  +|++....
T Consensus         3 ~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~   50 (487)
T PRK07190          3 TQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALN   50 (487)
T ss_pred             CccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeC
Confidence            34589999999999999999999999999999999875  56654443

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.27  E-value=8.6e-07  Score=90.16  Aligned_cols=50  Identities=12%  Similarity=0.161  Sum_probs=40.1

Q ss_pred             hHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 014883          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (416)
Q Consensus       280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~  332 (416)
                      ++.+.+.+.++..|.++++++.|++|...  ++. ..|++.+|+++.+|.||+
T Consensus       223 ~~~~~l~~~l~~~GV~i~~~~~v~~v~~~--~~~-~~v~~~~g~~i~~D~vl~  272 (499)
T PTZ00052        223 QCSEKVVEYMKEQGTLFLEGVVPINIEKM--DDK-IKVLFSDGTTELFDTVLY  272 (499)
T ss_pred             HHHHHHHHHHHHcCCEEEcCCeEEEEEEc--CCe-EEEEECCCCEEEcCEEEE
Confidence            46677778788899999999999999864  333 457777888999999994

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.27  E-value=9.8e-07  Score=92.05  Aligned_cols=41  Identities=24%  Similarity=0.294  Sum_probs=36.9

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      ...++||||||+|++||+||..++++|.+|+|+||....||
T Consensus         5 ~~~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g   45 (626)
T PRK07803          5 ERHSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKA   45 (626)
T ss_pred             cceeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCC
Confidence            34468999999999999999999999999999999986655

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=98.26  E-value=7.6e-07  Score=87.54  Aligned_cols=53  Identities=21%  Similarity=0.246  Sum_probs=40.2

Q ss_pred             chHHHHHHHHHHh-cCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE-ECC
Q 014883          279 GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDP  334 (416)
Q Consensus       279 ~~l~~al~r~~~~-~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI-~~p  334 (416)
                      ..+.+.|.+.+.. .|++++++++|++|..+  ++. +.|++.+|++++||.|| ++.
T Consensus       105 ~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~--~~~-~~v~~~~g~~~~ad~vV~AdG  159 (382)
T TIGR01984       105 ADLGQALLSRLALLTNIQLYCPARYKEIIRN--QDY-VRVTLDNGQQLRAKLLIAADG  159 (382)
T ss_pred             HHHHHHHHHHHHhCCCcEEEcCCeEEEEEEc--CCe-EEEEECCCCEEEeeEEEEecC
Confidence            3566777776666 48999999999999875  333 56777788889999999 554

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.26  E-value=8.9e-07  Score=91.20  Aligned_cols=41  Identities=24%  Similarity=0.358  Sum_probs=38.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (416)
                      .++||||||+|.+||+||..|+++|.+|+|||++..+||.+
T Consensus         5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~   45 (557)
T PRK12844          5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGST   45 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcee
Confidence            36899999999999999999999999999999999999965

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.26  E-value=1.2e-06  Score=91.72  Aligned_cols=50  Identities=22%  Similarity=0.314  Sum_probs=43.2

Q ss_pred             CCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883           13 PPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (416)
Q Consensus        13 ~~~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (416)
                      |+.++..+...+|+|||+|++||+||..|++.|++|+|+|+++++||..+
T Consensus       301 ~~~~~~~~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~  350 (639)
T PRK12809        301 PDVSKVVPRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLT  350 (639)
T ss_pred             CCCCcccCCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeee
Confidence            33344444567999999999999999999999999999999999999875

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.26  E-value=1.1e-06  Score=91.23  Aligned_cols=46  Identities=24%  Similarity=0.249  Sum_probs=39.8

Q ss_pred             CCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883           16 PPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (416)
Q Consensus        16 ~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (416)
                      .++...++||||||+|.+||+||+.++++|.+|+||||....||.+
T Consensus         6 ~~~~~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~t   51 (591)
T PRK07057          6 TSLPRRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHT   51 (591)
T ss_pred             cCcccccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCc
Confidence            3455567899999999999999999999999999999988766643

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.25  E-value=9.1e-07  Score=91.54  Aligned_cols=41  Identities=22%  Similarity=0.402  Sum_probs=38.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (416)
                      .++||||||+|.+||+||+.++++|.+|+||||.+..||.+
T Consensus        10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~t   50 (584)
T PRK12835         10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGST   50 (584)
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCchH
Confidence            36899999999999999999999999999999999999843

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=98.25  E-value=8.6e-07  Score=87.39  Aligned_cols=54  Identities=20%  Similarity=0.207  Sum_probs=41.5

Q ss_pred             cchHHHHHHHHHHhcC-cEEEcCCceeEEEEecCCCcEEEEEeC-CCcEEEcCEEE-ECC
Q 014883          278 QGELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLA-SGQDILSHKLV-LDP  334 (416)
Q Consensus       278 ~~~l~~al~r~~~~~G-g~i~l~~~V~~I~~~~~~g~~~gV~l~-~G~~i~Ad~VI-~~p  334 (416)
                      -..|-++|.+.+...+ .+++.++.|+.+..+  ++.+ .|+++ +|++++||.|| ++.
T Consensus       103 ~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~--~~~v-~v~l~~dG~~~~a~llVgADG  159 (387)
T COG0654         103 RSDLLNALLEAARALPNVTLRFGAEVEAVEQD--GDGV-TVTLSFDGETLDADLLVGADG  159 (387)
T ss_pred             hHHHHHHHHHHHhhCCCcEEEcCceEEEEEEc--CCce-EEEEcCCCcEEecCEEEECCC
Confidence            3455666667676666 799999999999987  4444 47778 99999999999 554

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.25  E-value=8.6e-07  Score=86.99  Aligned_cols=34  Identities=12%  Similarity=0.292  Sum_probs=32.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      .+||+|||||++||++|+.|+++|++|+|+|+++
T Consensus         1 ~~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~   34 (374)
T PRK06617          1 MSNTVILGCGLSGMLTALSFAQKGIKTTIFESKS   34 (374)
T ss_pred             CccEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence            3799999999999999999999999999999975

>PRK06753 hypothetical protein; Provisional

Probab=98.24  E-value=9.4e-07  Score=86.61  Aligned_cols=36  Identities=19%  Similarity=0.308  Sum_probs=33.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (416)
                      .||+|||||++||++|..|+++|++|+|+|+++...
T Consensus         1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~   36 (373)
T PRK06753          1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVK   36 (373)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccc
Confidence            389999999999999999999999999999998764

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.24  E-value=1.1e-06  Score=91.12  Aligned_cols=40  Identities=28%  Similarity=0.335  Sum_probs=36.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (416)
                      ...||||||+|++||+||..++++|.+|+|+||....||.
T Consensus         2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~   41 (589)
T PRK08641          2 AKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSH   41 (589)
T ss_pred             CCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence            4569999999999999999999999999999999887664

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=98.22  E-value=1.1e-06  Score=86.83  Aligned_cols=35  Identities=14%  Similarity=0.233  Sum_probs=33.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      ++||+|||||++||++|+.|+++|++|+|+|+++.
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~   36 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR   36 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence            47999999999999999999999999999999984

>PTZ00367 squalene epoxidase; Provisional

Probab=98.22  E-value=1.2e-06  Score=89.74  Aligned_cols=36  Identities=28%  Similarity=0.543  Sum_probs=33.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ..++||||||||++||++|..|+++|++|+|+|++.
T Consensus        31 ~~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         31 NYDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             ccCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            356999999999999999999999999999999975

>PLN02507 glutathione reductase

Probab=98.22  E-value=1.3e-06  Score=88.88  Aligned_cols=44  Identities=23%  Similarity=0.138  Sum_probs=39.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEcc---------CCCCCCcccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDP---------NPFYGSHFSS   63 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~---------~~~~GG~~~s   63 (416)
                      +.+|||||||+|.+|+.||.++++.|++|+++|+         .+.+||.|..
T Consensus        23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n   75 (499)
T PLN02507         23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVI   75 (499)
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeec
Confidence            4469999999999999999999999999999996         3679999865

>PRK11445 putative oxidoreductase; Provisional

Probab=98.22  E-value=1.1e-06  Score=85.38  Aligned_cols=35  Identities=20%  Similarity=0.370  Sum_probs=33.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (416)
                      +|||+|||||++||++|+.|+++ ++|+|+|+++..
T Consensus         1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~   35 (351)
T PRK11445          1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQC   35 (351)
T ss_pred             CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCcc
Confidence            38999999999999999999999 999999999865

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=98.22  E-value=1.5e-06  Score=94.97  Aligned_cols=43  Identities=14%  Similarity=0.108  Sum_probs=39.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      +..||+|||||++||+||..|++.|++|+|+|+.+.+||..+.
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~  471 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQY  471 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeec
Confidence            4579999999999999999999999999999999999998653

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.22  E-value=1.4e-06  Score=90.21  Aligned_cols=42  Identities=31%  Similarity=0.263  Sum_probs=38.1

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (416)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (416)
                      ...++||||||+|.+||+||..++++|.+|+||||....||.
T Consensus         4 ~~~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~   45 (588)
T PRK08958          4 PVREFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSH   45 (588)
T ss_pred             CccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence            345689999999999999999999999999999999887774

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=98.22  E-value=1.3e-06  Score=85.35  Aligned_cols=40  Identities=23%  Similarity=0.348  Sum_probs=36.2

Q ss_pred             cEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCCCC-cccc
Q 014883           24 DLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGS-HFSS   63 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~GG-~~~s   63 (416)
                      ||||||||++||++|..|+++  |++|+|+|+.+..|| ++++
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~   43 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWS   43 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccce
Confidence            899999999999999999998  999999999998887 3443

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=98.22  E-value=1.4e-06  Score=90.86  Aligned_cols=40  Identities=20%  Similarity=0.368  Sum_probs=36.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      ...|||||||||+.|+++|+.|+++|++|+|||+++.-+|
T Consensus        69 ~~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~G  108 (627)
T PLN02464         69 AEPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSG  108 (627)
T ss_pred             CCccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCC
Confidence            3459999999999999999999999999999999976666

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=98.22  E-value=1.8e-06  Score=89.06  Aligned_cols=45  Identities=20%  Similarity=0.332  Sum_probs=38.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC--CCcccccC
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY--GSHFSSLS   65 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~--GG~~~s~~   65 (416)
                      .++||+|||||++||++|+.|++.|++|+|+|+++.+  +++...+.
T Consensus        22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~   68 (547)
T PRK08132         22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFA   68 (547)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEc
Confidence            4689999999999999999999999999999999866  55554443

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.22  E-value=1.5e-06  Score=89.69  Aligned_cols=42  Identities=26%  Similarity=0.552  Sum_probs=38.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (416)
                      .++||||||+|.+|++||+.++++|.+|+||||...+||.+.
T Consensus         6 ~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~~   47 (557)
T PRK07843          6 QEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTA   47 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCcccc
Confidence            468999999999999999999999999999999999988653

>PRK06126 hypothetical protein; Provisional

Probab=98.22  E-value=1.3e-06  Score=90.03  Aligned_cols=46  Identities=9%  Similarity=0.146  Sum_probs=38.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC--CCcccccC
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY--GSHFSSLS   65 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~--GG~~~s~~   65 (416)
                      +..+||+|||||++||++|+.|++.|++|+|+|+++..  .+++..+.
T Consensus         5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~   52 (545)
T PRK06126          5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTS   52 (545)
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCC
Confidence            44689999999999999999999999999999998743  34444433

>PRK08244 hypothetical protein; Provisional

Probab=98.22  E-value=1.2e-06  Score=89.21  Aligned_cols=44  Identities=16%  Similarity=0.215  Sum_probs=37.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC--CCcccccC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY--GSHFSSLS   65 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~--GG~~~s~~   65 (416)
                      ++||+|||||++||++|+.|++.|++|+|+|+++..  .|+..++.
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~   47 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLH   47 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEec
Confidence            489999999999999999999999999999998754  45555543

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=98.21  E-value=1.2e-06  Score=87.78  Aligned_cols=34  Identities=29%  Similarity=0.416  Sum_probs=32.0

Q ss_pred             ccEEEECCChhHHHHHHHHhh----CCCeEEEEccCCC
Q 014883           23 FDLIVIGTGLPESVISAAASA----SGKSVLHLDPNPF   56 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~----~G~~V~vlE~~~~   56 (416)
                      |||+|||||++||++|+.|++    +|++|+|+|+++.
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~   38 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDN   38 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCC
Confidence            799999999999999999999    8999999999654

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.21  E-value=1.2e-06  Score=86.76  Aligned_cols=35  Identities=20%  Similarity=0.338  Sum_probs=32.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCC--CeEEEEccCCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASG--KSVLHLDPNPF   56 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G--~~V~vlE~~~~   56 (416)
                      .|||+|||||++||++|+.|+++|  ++|+|+|+++.
T Consensus         1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~   37 (403)
T PRK07333          1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA   37 (403)
T ss_pred             CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence            389999999999999999999996  99999999874

>PRK07804 L-aspartate oxidase; Provisional

Probab=98.20  E-value=1.8e-06  Score=88.70  Aligned_cols=41  Identities=24%  Similarity=0.396  Sum_probs=37.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (416)
                      +.++||||||+|.+||+||+.++++|.+|+|+||....||.
T Consensus        14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~   54 (541)
T PRK07804         14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGS   54 (541)
T ss_pred             ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCc
Confidence            34689999999999999999999999999999999987773

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.20  E-value=1.5e-06  Score=90.18  Aligned_cols=43  Identities=19%  Similarity=0.213  Sum_probs=37.9

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (416)
Q Consensus        18 ~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (416)
                      +...++||||||+|++||+||+.++++|.+|+|+||....||.
T Consensus         8 ~~~~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~   50 (598)
T PRK09078          8 IIDHKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSH   50 (598)
T ss_pred             ccccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcc
Confidence            3345789999999999999999999999999999998776664

>PRK07538 hypothetical protein; Provisional

Probab=98.20  E-value=1.4e-06  Score=86.75  Aligned_cols=35  Identities=14%  Similarity=0.356  Sum_probs=32.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (416)
                      .||+|||||++||++|..|+++|++|+|+|+++.+
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   35 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL   35 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence            38999999999999999999999999999998754

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=98.19  E-value=2.1e-06  Score=86.84  Aligned_cols=43  Identities=16%  Similarity=0.235  Sum_probs=39.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (416)
                      ...+||+|||+|.+||+||..|++.|++|+|+|+.+++||...
T Consensus       141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~  183 (471)
T PRK12810        141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLR  183 (471)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceee
Confidence            3457999999999999999999999999999999999999764

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=98.19  E-value=2.3e-06  Score=86.40  Aligned_cols=47  Identities=23%  Similarity=0.364  Sum_probs=41.6

Q ss_pred             CCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883           16 PPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (416)
Q Consensus        16 ~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (416)
                      ++...+..+|+|||+|.+||+||..|++.|++|+++|+++.+||..+
T Consensus       135 ~~~~~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~  181 (467)
T TIGR01318       135 SHVVPTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLT  181 (467)
T ss_pred             CCcCCCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence            33334567999999999999999999999999999999999999775

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.19  E-value=1.7e-06  Score=89.33  Aligned_cols=41  Identities=24%  Similarity=0.275  Sum_probs=37.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (416)
                      .++||||||+|.+||+||..++++|.+|+|+||....||.+
T Consensus         4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s   44 (566)
T PRK06452          4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHS   44 (566)
T ss_pred             ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcc
Confidence            46899999999999999999999999999999998777743

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=98.18  E-value=1.6e-06  Score=81.54  Aligned_cols=35  Identities=26%  Similarity=0.495  Sum_probs=33.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (416)
                      ...+||||||||.+|.+.|+.|+|.|++|+|+|+.
T Consensus        43 ~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD   77 (509)
T KOG1298|consen   43 DGAADVIIVGAGVAGSALAYALAKDGRRVHVIERD   77 (509)
T ss_pred             CCcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence            45789999999999999999999999999999996

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=98.18  E-value=2.3e-06  Score=88.71  Aligned_cols=45  Identities=22%  Similarity=0.401  Sum_probs=41.1

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      ...++||||||+|.+|++||..++++|++|+|||+++.+||.+..
T Consensus         9 ~~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~   53 (581)
T PRK06134          9 PDLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTAW   53 (581)
T ss_pred             CCCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCccccc
Confidence            345789999999999999999999999999999999999998654

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=98.18  E-value=1.8e-06  Score=88.86  Aligned_cols=40  Identities=20%  Similarity=0.283  Sum_probs=36.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      +..+||+|||||++||++|..|++.|++|+|+|+++.++.
T Consensus         8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~   47 (538)
T PRK06183          8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYD   47 (538)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Confidence            4568999999999999999999999999999999987643

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=98.18  E-value=1.9e-06  Score=94.46  Aligned_cols=43  Identities=28%  Similarity=0.441  Sum_probs=40.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      ..+||+|||||++||+||..|+++|++|+|+|+++++||....
T Consensus       162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~  204 (985)
T TIGR01372       162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS  204 (985)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence            4689999999999999999999999999999999999998864

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK06175 L-aspartate oxidase; Provisional

Probab=98.17  E-value=1.7e-06  Score=86.46  Aligned_cols=39  Identities=10%  Similarity=0.220  Sum_probs=35.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (416)
                      .++||||||+|.+||+||..++ +|.+|+||||.+..||.
T Consensus         3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~   41 (433)
T PRK06175          3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECN   41 (433)
T ss_pred             ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCc
Confidence            4689999999999999999975 79999999999988874

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=98.17  E-value=2e-06  Score=89.55  Aligned_cols=41  Identities=17%  Similarity=0.131  Sum_probs=37.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (416)
                      .++||||||+|.+||.||+.++++|.+|+|+||....||.+
T Consensus        28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t   68 (617)
T PTZ00139         28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHT   68 (617)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCc
Confidence            46899999999999999999999999999999998877643

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.16  E-value=1.9e-06  Score=90.01  Aligned_cols=40  Identities=28%  Similarity=0.298  Sum_probs=36.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (416)
                      .++||||||+|.+||+||..++++|.+|+|+||+..+|+.
T Consensus        34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~g   73 (640)
T PRK07573         34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRRA   73 (640)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCcc
Confidence            4689999999999999999999999999999998888644

>PLN02546 glutathione reductase

Probab=98.16  E-value=2e-06  Score=88.23  Aligned_cols=44  Identities=27%  Similarity=0.144  Sum_probs=39.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEcc---------CCCCCCccccc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDP---------NPFYGSHFSSL   64 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~---------~~~~GG~~~s~   64 (416)
                      .+|||||||+|.+|+.||..+++.|++|+++|+         ...+||-|-.+
T Consensus        78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~  130 (558)
T PLN02546         78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLR  130 (558)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCc
Confidence            369999999999999999999999999999997         26789988754

>PRK07588 hypothetical protein; Provisional

Probab=98.16  E-value=1.8e-06  Score=85.22  Aligned_cols=35  Identities=11%  Similarity=0.245  Sum_probs=32.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (416)
                      .||+|||||++||++|+.|+++|++|+|+|+++..
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~   35 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPEL   35 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCc
Confidence            38999999999999999999999999999998653

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=98.15  E-value=1.8e-06  Score=87.31  Aligned_cols=62  Identities=16%  Similarity=0.130  Sum_probs=45.5

Q ss_pred             cEEeecCCc---chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEe---CCC--cEEEcCEEEEC
Q 014883          270 ALIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASG--QDILSHKLVLD  333 (416)
Q Consensus       270 ~~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l---~~G--~~i~Ad~VI~~  333 (416)
                      +.+.|.+|.   ..+.++|.+.++..|++|+++++|++|..+. ++. +.|++   .+|  .+++||+||+.
T Consensus       166 Al~~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~-~~~-v~v~~~~~~~g~~~~i~A~~VV~A  235 (483)
T TIGR01320       166 ANWAAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQS-DGS-WTVTVKNTRTGGKRTLNTRFVFVG  235 (483)
T ss_pred             EEEeCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CCe-EEEEEeeccCCceEEEECCEEEEC
Confidence            355677763   6899999999989999999999999998751 333 34432   234  36899999843

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=98.15  E-value=2.4e-06  Score=81.55  Aligned_cols=43  Identities=16%  Similarity=0.214  Sum_probs=36.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS   65 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~   65 (416)
                      -+|||||||++||++|+.|+|.|++|+|||++.-+=|.-.+.+
T Consensus         3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g~si~   45 (420)
T KOG2614|consen    3 PKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTSIN   45 (420)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccCCccee
Confidence            4899999999999999999999999999999876644333333

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=98.15  E-value=2.3e-06  Score=86.59  Aligned_cols=52  Identities=12%  Similarity=0.180  Sum_probs=41.8

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~  332 (416)
                      .++.+.+.+.++..|.++++++.|++|..+  ++....|++.+|+++.+|.||+
T Consensus       231 ~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~--~~~~~~v~~~~g~~i~~D~vl~  282 (486)
T TIGR01423       231 STLRKELTKQLRANGINIMTNENPAKVTLN--ADGSKHVTFESGKTLDVDVVMM  282 (486)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEEc--CCceEEEEEcCCCEEEcCEEEE
Confidence            567788888888999999999999999865  2323456677888999999994

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=98.14  E-value=2.2e-06  Score=86.73  Aligned_cols=44  Identities=14%  Similarity=0.141  Sum_probs=38.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCCCCcccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~GG~~~s   63 (416)
                      +.++||||||||+.|+++|+.|++.  |.+|+||||.+.+|+..+.
T Consensus         3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a~~sS~   48 (494)
T PRK05257          3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVALESSN   48 (494)
T ss_pred             CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchhhhcCC
Confidence            4568999999999999999999984  8999999999888765543

>PRK07395 L-aspartate oxidase; Provisional

Probab=98.14  E-value=2.2e-06  Score=88.07  Aligned_cols=43  Identities=23%  Similarity=0.304  Sum_probs=37.4

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (416)
Q Consensus        18 ~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (416)
                      +...++||||||+|++||+||+.++ +|.+|+|+||.+..||.+
T Consensus         5 ~~~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~s   47 (553)
T PRK07395          5 ILPSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSAS   47 (553)
T ss_pred             cccccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCch
Confidence            3455789999999999999999986 599999999999888743

>PRK10262 thioredoxin reductase; Provisional

Probab=98.14  E-value=2.4e-06  Score=82.04  Aligned_cols=42  Identities=12%  Similarity=0.198  Sum_probs=37.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      ..+||+|||||++||.||..|++.|++|+++|+. ..||.+..
T Consensus         5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~   46 (321)
T PRK10262          5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTT   46 (321)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceec
Confidence            4689999999999999999999999999999965 67887654

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=98.14  E-value=2.1e-06  Score=87.41  Aligned_cols=41  Identities=17%  Similarity=0.178  Sum_probs=35.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      ..|+|||||.+||+||..|.+.|++|+++|+++.+||.++.
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~   42 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRY   42 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCee
Confidence            47999999999999999999999999999999999999974

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=98.14  E-value=3.1e-06  Score=90.49  Aligned_cols=43  Identities=16%  Similarity=0.195  Sum_probs=40.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (416)
                      ....||+|||||++||+||..|++.|++|+|+|+++.+||..+
T Consensus       429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~  471 (752)
T PRK12778        429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK  471 (752)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence            3467999999999999999999999999999999999999865

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=98.14  E-value=2.3e-06  Score=89.22  Aligned_cols=40  Identities=20%  Similarity=0.191  Sum_probs=36.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (416)
                      .++||||||+|++||.||..++++|.+|+|+||....||.
T Consensus        49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~   88 (635)
T PLN00128         49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSH   88 (635)
T ss_pred             eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCc
Confidence            3589999999999999999999999999999999887764

>PRK02106 choline dehydrogenase; Validated

Probab=98.13  E-value=2.4e-06  Score=88.32  Aligned_cols=38  Identities=29%  Similarity=0.418  Sum_probs=34.9

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhh-CCCeEEEEccCCC
Q 014883           19 EPTAFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPF   56 (416)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~-~G~~V~vlE~~~~   56 (416)
                      +..+||+||||+|.+|+++|.+|++ +|++|+|||+.+.
T Consensus         2 ~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~   40 (560)
T PRK02106          2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP   40 (560)
T ss_pred             CCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence            3456999999999999999999999 8999999999964

>PLN02852 ferredoxin-NADP+ reductase

Probab=98.13  E-value=3e-06  Score=85.08  Aligned_cols=42  Identities=17%  Similarity=0.137  Sum_probs=39.2

Q ss_pred             cccEEEECCChhHHHHHHHHhh--CCCeEEEEccCCCCCCcccc
Q 014883           22 AFDLIVIGTGLPESVISAAASA--SGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~--~G~~V~vlE~~~~~GG~~~s   63 (416)
                      ..+|+|||||.+||.||..|++  .|++|+|+|+.+.+||..+.
T Consensus        26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~   69 (491)
T PLN02852         26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRS   69 (491)
T ss_pred             CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEee
Confidence            4689999999999999999987  79999999999999998875

>PRK05868 hypothetical protein; Validated

Probab=98.13  E-value=2.6e-06  Score=83.45  Aligned_cols=35  Identities=17%  Similarity=0.205  Sum_probs=33.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (416)
                      .||+|||||++||++|..|+++|++|+|+|+++..
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~   36 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL   36 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence            48999999999999999999999999999998764

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=98.12  E-value=2.8e-06  Score=82.99  Aligned_cols=37  Identities=24%  Similarity=0.240  Sum_probs=34.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      .||+|||||++||.||+.|++.|++|+|+|+++...-
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s   39 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKT   39 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCc
Confidence            4999999999999999999999999999998876643

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.12  E-value=2.7e-06  Score=87.08  Aligned_cols=41  Identities=17%  Similarity=0.312  Sum_probs=37.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (416)
                      ...|||+|||||++||+||.+|++.|++|+|+|.  ++||.+.
T Consensus       209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~--~~GG~~~  249 (517)
T PRK15317        209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE--RFGGQVL  249 (517)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCeee
Confidence            4469999999999999999999999999999986  4999875

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.11  E-value=2.4e-06  Score=88.47  Aligned_cols=40  Identities=18%  Similarity=0.214  Sum_probs=35.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCC--CeEEEEccCCCCCCc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSH   60 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G--~~V~vlE~~~~~GG~   60 (416)
                      .++||||||+|.+||+||+.++++|  .+|+|+||....||.
T Consensus         2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~   43 (575)
T PRK05945          2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSH   43 (575)
T ss_pred             CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchh
Confidence            4689999999999999999999874  899999999877764

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=98.10  E-value=3.1e-06  Score=88.67  Aligned_cols=40  Identities=33%  Similarity=0.393  Sum_probs=36.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (416)
                      .++||||||+|++||.||..++++|.+|+||||....||.
T Consensus         4 ~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~s~   43 (657)
T PRK08626          4 IYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRSH   43 (657)
T ss_pred             eeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCCcc
Confidence            4689999999999999999999999999999999887663

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=98.09  E-value=3.2e-06  Score=82.85  Aligned_cols=34  Identities=32%  Similarity=0.553  Sum_probs=32.8

Q ss_pred             cEEEECCChhHHHHHHHH--hhCCCeEEEEccCCCC
Q 014883           24 DLIVIGTGLPESVISAAA--SASGKSVLHLDPNPFY   57 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~L--a~~G~~V~vlE~~~~~   57 (416)
                      ||||||||++||++|++|  ++.|++|+|+|++...
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~   36 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP   36 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence            899999999999999999  8899999999999887

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=98.09  E-value=4.2e-06  Score=83.28  Aligned_cols=53  Identities=21%  Similarity=0.209  Sum_probs=45.6

Q ss_pred             CCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccccc
Q 014883           12 VPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (416)
Q Consensus        12 ~~~~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~   64 (416)
                      .|..++-..+...|.|||||.+||+||..|+++|++|+|+|+.+..||+...-
T Consensus       113 i~~~~~~~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yG  165 (457)
T COG0493         113 IPGELPGSRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYG  165 (457)
T ss_pred             CCCCCCCCCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEec
Confidence            44444444555899999999999999999999999999999999999998753

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=98.09  E-value=3.2e-06  Score=88.33  Aligned_cols=47  Identities=17%  Similarity=0.270  Sum_probs=38.8

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhh-CCCeEEEEccCCCC--CCcccccC
Q 014883           19 EPTAFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPFY--GSHFSSLS   65 (416)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~-~G~~V~vlE~~~~~--GG~~~s~~   65 (416)
                      +++++||+|||||++||++|+.|++ +|.+|+|+|+++..  .|++-.+.
T Consensus        29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~   78 (634)
T PRK08294         29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIA   78 (634)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEC
Confidence            3557999999999999999999999 59999999998643  45554333

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.08  E-value=3.5e-06  Score=87.35  Aligned_cols=42  Identities=24%  Similarity=0.324  Sum_probs=37.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCC---CeEEEEccCCCCCCcc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASG---KSVLHLDPNPFYGSHF   61 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G---~~V~vlE~~~~~GG~~   61 (416)
                      ..++||+|||+|.+||+||..++++|   .+|+|+||....||.+
T Consensus         3 ~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s   47 (577)
T PRK06069          3 VLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHS   47 (577)
T ss_pred             ceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCc
Confidence            34689999999999999999999998   8999999999877743

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=98.08  E-value=4.1e-06  Score=93.25  Aligned_cols=43  Identities=23%  Similarity=0.383  Sum_probs=39.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (416)
                      +.++||||||+|.+||+||+..+++|.+|+||||.+..||.+.
T Consensus       407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~  449 (1167)
T PTZ00306        407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSA  449 (1167)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchh
Confidence            4468999999999999999999999999999999999999753

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=98.08  E-value=4.4e-06  Score=87.72  Aligned_cols=42  Identities=19%  Similarity=0.228  Sum_probs=39.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (416)
                      ...+|+|||+|++||+||..|++.|++|+|+|+++++||...
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~  233 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR  233 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence            357999999999999999999999999999999999999874

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=98.08  E-value=3.5e-06  Score=87.27  Aligned_cols=38  Identities=21%  Similarity=0.287  Sum_probs=35.5

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (416)
                      ||||||+|++||+||+.++++|.+|+||||....||.+
T Consensus         1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~s   38 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHT   38 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCcc
Confidence            89999999999999999999999999999998877744

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>TIGR02462 pyranose_ox pyranose oxidase

Probab=98.08  E-value=3.8e-06  Score=85.31  Aligned_cols=39  Identities=13%  Similarity=0.158  Sum_probs=37.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (416)
                      |||||||+|.+|+++|+.|+++|++|+++|++...||.+
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~   39 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLK   39 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCc
Confidence            699999999999999999999999999999999999754

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=98.07  E-value=5.5e-06  Score=83.53  Aligned_cols=43  Identities=19%  Similarity=0.204  Sum_probs=39.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (416)
                      ...++|+|||||++||+||..|++.|++|+|+|+++++||...
T Consensus       138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~  180 (457)
T PRK11749        138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLR  180 (457)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEee
Confidence            3357999999999999999999999999999999999999754

>PRK06475 salicylate hydroxylase; Provisional

Probab=98.07  E-value=3.7e-06  Score=83.32  Aligned_cols=35  Identities=14%  Similarity=0.154  Sum_probs=32.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (416)
                      -+|+|||||++||++|..|+++|++|+|+|+++.+
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~   37 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL   37 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence            48999999999999999999999999999998754

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.07  E-value=4.1e-06  Score=85.65  Aligned_cols=41  Identities=17%  Similarity=0.302  Sum_probs=37.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (416)
                      ...|||+|||||.+||+||.+|++.|++|+|+|.  ++||.+.
T Consensus       210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~  250 (515)
T TIGR03140       210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVK  250 (515)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccc
Confidence            4469999999999999999999999999999985  6999875

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=98.07  E-value=3.7e-06  Score=82.62  Aligned_cols=38  Identities=24%  Similarity=0.221  Sum_probs=35.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (416)
                      ||+|||||++|+.||..|++.|++|+|+|+++..|-..
T Consensus         2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~p~   39 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLTPA   39 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccCch
Confidence            89999999999999999999999999999988876543

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=98.06  E-value=4.1e-06  Score=87.22  Aligned_cols=43  Identities=19%  Similarity=0.318  Sum_probs=39.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccC-CCCCCccccc
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPN-PFYGSHFSSL   64 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~-~~~GG~~~s~   64 (416)
                      +|||||||+|.+|..||..+++.|++|+|+|+. +.+||-|-..
T Consensus       116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~  159 (659)
T PTZ00153        116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNV  159 (659)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEe
Confidence            689999999999999999999999999999974 5799987654

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=98.06  E-value=6.2e-06  Score=85.46  Aligned_cols=43  Identities=28%  Similarity=0.471  Sum_probs=39.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      .++||||||+|.+|++||..++++|++|+|||+++..||.+..
T Consensus        15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~~   57 (578)
T PRK12843         15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTAT   57 (578)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccc
Confidence            3689999999999999999999999999999999999997753

>PLN02815 L-aspartate oxidase

Probab=98.05  E-value=5.7e-06  Score=85.52  Aligned_cols=40  Identities=23%  Similarity=0.350  Sum_probs=36.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (416)
                      ..++||||||+|++||+||+.++++| +|+||||....||.
T Consensus        27 ~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~   66 (594)
T PLN02815         27 TKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESN   66 (594)
T ss_pred             ccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCc
Confidence            33589999999999999999999999 99999999998874

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=98.04  E-value=7.1e-06  Score=83.16  Aligned_cols=42  Identities=17%  Similarity=0.259  Sum_probs=39.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (416)
                      ...+|+|||+|++||+||..|++.|++|+|+|+.+++||...
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~  183 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLM  183 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence            346999999999999999999999999999999999999775

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>TIGR00551 nadB L-aspartate oxidase

Probab=98.03  E-value=4.9e-06  Score=84.56  Aligned_cols=39  Identities=26%  Similarity=0.423  Sum_probs=35.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (416)
                      ++||||||+|++||.||+.++++|. |+|+||.+..||.+
T Consensus         2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s   40 (488)
T TIGR00551         2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNS   40 (488)
T ss_pred             CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcc
Confidence            4799999999999999999999998 99999998877743

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=98.03  E-value=4.6e-06  Score=86.43  Aligned_cols=36  Identities=25%  Similarity=0.332  Sum_probs=33.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ....+|+|||||++||++|..|++.|++|+|+|++.
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~  114 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL  114 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence            346899999999999999999999999999999975

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=98.03  E-value=5.2e-06  Score=82.63  Aligned_cols=36  Identities=17%  Similarity=0.399  Sum_probs=33.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCC-CeEEEEccCCCCCC
Q 014883           24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGS   59 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G-~~V~vlE~~~~~GG   59 (416)
                      +|+|||||++||++|..|+++| .+|+|+|+++.++.
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~   38 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGE   38 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCC
Confidence            6999999999999999999998 59999999988754

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=98.02  E-value=5.2e-06  Score=78.89  Aligned_cols=45  Identities=16%  Similarity=0.192  Sum_probs=39.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhh------CCCeEEEEccCCCCCCcccccC
Q 014883           21 TAFDLIVIGTGLPESVISAAASA------SGKSVLHLDPNPFYGSHFSSLS   65 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~------~G~~V~vlE~~~~~GG~~~s~~   65 (416)
                      ..+||+|||||.+||+||++|.+      .-.+|+|+|+...+||.+-|-.
T Consensus        75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGa  125 (621)
T KOG2415|consen   75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGA  125 (621)
T ss_pred             ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecce
Confidence            46999999999999999999854      3479999999999999988754

>PRK08071 L-aspartate oxidase; Provisional

Probab=98.01  E-value=5.4e-06  Score=84.55  Aligned_cols=39  Identities=18%  Similarity=0.301  Sum_probs=35.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (416)
                      ++||||||+|.+||.||..+++ |.+|+|+||.+..||.+
T Consensus         3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s   41 (510)
T PRK08071          3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNS   41 (510)
T ss_pred             ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCc
Confidence            6899999999999999999976 99999999999877753

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=98.01  E-value=5.8e-06  Score=83.28  Aligned_cols=43  Identities=9%  Similarity=0.115  Sum_probs=38.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCCCCcccc
Q 014883           21 TAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~GG~~~s   63 (416)
                      ..+||||||||++|+++|+.|++.  |.+|+|||+.+.+|-..+.
T Consensus         5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a~~sS~   49 (497)
T PRK13339          5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIESSN   49 (497)
T ss_pred             ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcchhcCC
Confidence            457999999999999999999999  9999999997788765543

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=98.01  E-value=5.7e-06  Score=86.08  Aligned_cols=39  Identities=21%  Similarity=0.253  Sum_probs=35.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCCCC
Q 014883           21 TAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGS   59 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~GG   59 (416)
                      .++||||||+|.+||+||+.++++  |.+|+|+||.+..++
T Consensus        10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s   50 (608)
T PRK06854         10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRS   50 (608)
T ss_pred             eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCC
Confidence            368999999999999999999998  999999999987544

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=98.01  E-value=5.9e-06  Score=86.68  Aligned_cols=54  Identities=17%  Similarity=0.161  Sum_probs=47.3

Q ss_pred             cCCCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883            9 ELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus         9 ~~~~~~~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      -|-+|+-| ...+-..|.|||+|.+||+||..|-++|+.|+|+|+.+|+||...-
T Consensus      1773 gwm~p~pp-~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~y 1826 (2142)
T KOG0399|consen 1773 GWMKPCPP-AFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMY 1826 (2142)
T ss_pred             cCCccCCc-ccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeee
Confidence            47777644 4456689999999999999999999999999999999999998864

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=98.01  E-value=8.4e-06  Score=86.72  Aligned_cols=43  Identities=28%  Similarity=0.339  Sum_probs=38.2

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (416)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (416)
                      ..+..+|+|||+|++||+||+.|++.|++|+|+|+.+..|+..
T Consensus       380 ~~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~~  422 (1028)
T PRK06567        380 EPTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLPF  422 (1028)
T ss_pred             CCCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccccccccc
Confidence            3456799999999999999999999999999999988776653

>PRK06996 hypothetical protein; Provisional

Probab=98.00  E-value=6e-06  Score=81.72  Aligned_cols=39  Identities=15%  Similarity=0.289  Sum_probs=34.3

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCC----CeEEEEccCCC
Q 014883           18 IEPTAFDLIVIGTGLPESVISAAASASG----KSVLHLDPNPF   56 (416)
Q Consensus        18 ~~~~~~DViIIGaGl~GL~aA~~La~~G----~~V~vlE~~~~   56 (416)
                      +....+||+|||||++||++|+.|+++|    ++|+|+|+++.
T Consensus         7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~   49 (398)
T PRK06996          7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREP   49 (398)
T ss_pred             ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCC
Confidence            3455789999999999999999999997    47999999864

>PRK08401 L-aspartate oxidase; Provisional

Probab=97.99  E-value=6.7e-06  Score=83.01  Aligned_cols=50  Identities=18%  Similarity=0.199  Sum_probs=40.7

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~  332 (416)
                      ..+.+.|.+.++..|.+++.+ .|+.+..+  ++++++|.. +++.+.|+.||+
T Consensus       120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~--~g~v~Gv~~-~g~~i~a~~VVL  169 (466)
T PRK08401        120 KHIIKILYKHARELGVNFIRG-FAEELAIK--NGKAYGVFL-DGELLKFDATVI  169 (466)
T ss_pred             HHHHHHHHHHHHhcCCEEEEe-EeEEEEee--CCEEEEEEE-CCEEEEeCeEEE
Confidence            468888988888899998865 78888765  778888875 677899999994

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.98  E-value=7.2e-06  Score=83.11  Aligned_cols=42  Identities=31%  Similarity=0.358  Sum_probs=37.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC--------CCCCcccc
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP--------FYGSHFSS   63 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~--------~~GG~~~s   63 (416)
                      +||+||||+|.+|+.||..+++.|++|+++|+..        .+||-|-.
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n   51 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVN   51 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccc
Confidence            4899999999999999999999999999999742        58998754

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>TIGR00275 flavoprotein, HI0933 family

Probab=97.97  E-value=4.3e-06  Score=82.70  Aligned_cols=57  Identities=21%  Similarity=0.287  Sum_probs=44.2

Q ss_pred             EeecC-CcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 014883          272 IYPIY-GQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (416)
Q Consensus       272 ~~p~g-G~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~  332 (416)
                      .||.. ....+.+.|.+.+++.|.++++++.|++|..+  ++ .+.|++ +++++.||.||+
T Consensus        97 ~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~--~~-~~~v~~-~~~~i~ad~VIl  154 (400)
T TIGR00275        97 VFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKD--DN-GFGVET-SGGEYEADKVIL  154 (400)
T ss_pred             eECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEec--CC-eEEEEE-CCcEEEcCEEEE
Confidence            35443 35788899999888899999999999999764  33 356775 667899999994

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=97.97  E-value=1e-05  Score=78.65  Aligned_cols=40  Identities=20%  Similarity=0.183  Sum_probs=38.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (416)
                      .+|+|||+|.+||.+|..|++.|++|+++|+.+++||...
T Consensus        19 ~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~   58 (352)
T PRK12770         19 KKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLML   58 (352)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceee
Confidence            5899999999999999999999999999999999999764

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=97.97  E-value=7.5e-06  Score=84.81  Aligned_cols=41  Identities=22%  Similarity=0.152  Sum_probs=36.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCCCCcc
Q 014883           21 TAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHF   61 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~GG~~   61 (416)
                      .++||||||+|.+||+||+.++++  |.+|+|+||....||.+
T Consensus         3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s   45 (582)
T PRK09231          3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHT   45 (582)
T ss_pred             eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCh
Confidence            358999999999999999999987  47999999998877744

>PRK08275 putative oxidoreductase; Provisional

Probab=97.97  E-value=7.5e-06  Score=84.46  Aligned_cols=53  Identities=23%  Similarity=0.322  Sum_probs=41.1

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~Ad~VI~  332 (416)
                      ..+.+.|.+.++..|.+|+.++.|++|.++ ++|+++||..   .+|+  .+.|+.||+
T Consensus       137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~-~~g~v~Gv~~~~~~~g~~~~i~Ak~VIl  194 (554)
T PRK08275        137 HDIKKVLYRQLKRARVLITNRIMATRLLTD-ADGRVAGALGFDCRTGEFLVIRAKAVIL  194 (554)
T ss_pred             HHHHHHHHHHHHHCCCEEEcceEEEEEEEc-CCCeEEEEEEEecCCCcEEEEECCEEEE
Confidence            467788888888889999999999999875 2577778753   3554  478999884

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=97.97  E-value=5.5e-06  Score=80.18  Aligned_cols=43  Identities=30%  Similarity=0.362  Sum_probs=33.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEE-ccCCCCCCcccccCh
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHL-DPNPFYGSHFSSLSI   66 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vl-E~~~~~GG~~~s~~~   66 (416)
                      ||||||||++|+.||+.+|+.|.+|+++ ++.+.+|...-+-.+
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsi   44 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSI   44 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhh
Confidence            8999999999999999999999999999 778888876544443

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.96  E-value=7.3e-06  Score=84.40  Aligned_cols=53  Identities=15%  Similarity=0.207  Sum_probs=40.4

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~Ad~VI~  332 (416)
                      .++.+.|.+.+...|++|++++.|+++.+++ +++++||..   .+|+  .+.|+.||+
T Consensus       134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~-~~~v~Gv~~~~~~~g~~~~i~AkaVIl  191 (543)
T PRK06263        134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDE-NREVIGAIFLDLRNGEIFPIYAKATIL  191 (543)
T ss_pred             HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeC-CcEEEEEEEEECCCCcEEEEEcCcEEE
Confidence            4677888887777899999999999998872 444777653   3554  578999994

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=97.95  E-value=8.5e-06  Score=80.57  Aligned_cols=51  Identities=18%  Similarity=0.137  Sum_probs=41.8

Q ss_pred             hHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCc--EEEcCEEEE
Q 014883          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ--DILSHKLVL  332 (416)
Q Consensus       280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~--~i~Ad~VI~  332 (416)
                      ++.++|.+.++..|++|++++.|+++..+  ++++..|...+|+  .++||.||+
T Consensus       260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~--~~~V~~v~~~~g~~~~i~AD~VVL  312 (422)
T PRK05329        260 RLQNALRRAFERLGGRIMPGDEVLGAEFE--GGRVTAVWTRNHGDIPLRARHFVL  312 (422)
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEe--CCEEEEEEeeCCceEEEECCEEEE
Confidence            78999999998999999999999999876  5666666545554  589999884

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=97.95  E-value=8.9e-06  Score=83.14  Aligned_cols=46  Identities=26%  Similarity=0.322  Sum_probs=40.9

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        18 ~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      ++..++||||||+|.+||.||..++.+|.+|+++||....+|.+..
T Consensus         2 ~~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~   47 (562)
T COG1053           2 MTIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVA   47 (562)
T ss_pred             cccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhh
Confidence            4456799999999999999999999999999999999998865543

>PRK09077 L-aspartate oxidase; Provisional

Probab=97.95  E-value=1e-05  Score=83.17  Aligned_cols=40  Identities=18%  Similarity=0.338  Sum_probs=36.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (416)
                      +.++||||||+|.+||+||+.+++. .+|+|+||....||.
T Consensus         6 ~~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~   45 (536)
T PRK09077          6 EHQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGS   45 (536)
T ss_pred             cccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCC
Confidence            3468999999999999999999987 899999999988874

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=97.95  E-value=7.7e-06  Score=75.59  Aligned_cols=60  Identities=18%  Similarity=0.159  Sum_probs=48.4

Q ss_pred             hHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcE--EEcCEEE-ECCCCCCCCC
Q 014883          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQD--ILSHKLV-LDPSFTVPGS  341 (416)
Q Consensus       280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~--i~Ad~VI-~~p~~~~~~l  341 (416)
                      .+.++|.+..+.+||.++.+-+|.+....  +|++..|.+.+...  ++||.+| .+.++.-..|
T Consensus       259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~--~~~v~~i~trn~~diP~~a~~~VLAsGsffskGL  321 (421)
T COG3075         259 RLHNQLQRQFEQLGGLWMPGDEVKKATCK--GGRVTEIYTRNHADIPLRADFYVLASGSFFSKGL  321 (421)
T ss_pred             hHHHHHHHHHHHcCceEecCCceeeeeee--CCeEEEEEecccccCCCChhHeeeeccccccccc
Confidence            67788989999999999999999999987  88888898877765  5888877 5566553443

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.94  E-value=9.7e-06  Score=84.11  Aligned_cols=38  Identities=16%  Similarity=0.150  Sum_probs=34.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      .++||||||+|++||+||+.+++. .+|+|+||....||
T Consensus         4 ~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g   41 (583)
T PRK08205          4 HRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRS   41 (583)
T ss_pred             eeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCC
Confidence            468999999999999999999987 99999999876565

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=97.93  E-value=9.2e-06  Score=84.01  Aligned_cols=40  Identities=25%  Similarity=0.175  Sum_probs=36.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCCCCcc
Q 014883           22 AFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHF   61 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~GG~~   61 (416)
                      ++||+|||+|++||.||..++++  |.+|+|+||....||.+
T Consensus         3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s   44 (580)
T TIGR01176         3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHT   44 (580)
T ss_pred             ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCc
Confidence            58999999999999999999987  58999999999888754

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.87  E-value=1.6e-05  Score=70.58  Aligned_cols=34  Identities=24%  Similarity=0.388  Sum_probs=31.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (416)
                      ||||||||++|++||..|++.|++|+++|+.+..
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~   34 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGT   34 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHH
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEeccccc
Confidence            7999999999999999999999999999877653

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.85  E-value=2.4e-05  Score=81.04  Aligned_cols=42  Identities=21%  Similarity=0.263  Sum_probs=38.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (416)
                      ...+|+|||+|.+||+||..|++.|++|+|+|+++.+||..+
T Consensus       136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~  177 (564)
T PRK12771        136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR  177 (564)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence            346899999999999999999999999999999999999764

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.84  E-value=1.8e-05  Score=79.78  Aligned_cols=40  Identities=30%  Similarity=0.377  Sum_probs=36.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccccc
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~   64 (416)
                      +|||||+|.+|++||.+|++.|++|+++|++ .+||-|...
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~-~~GG~c~n~   41 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEA-DLGGTCLNE   41 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECC-cccccCCCC
Confidence            7999999999999999999999999999987 578877643

>PTZ00188 adrenodoxin reductase; Provisional

Probab=97.83  E-value=2.4e-05  Score=77.76  Aligned_cols=43  Identities=14%  Similarity=0.026  Sum_probs=38.5

Q ss_pred             cccEEEECCChhHHHHHHHH-hhCCCeEEEEccCCCCCCccccc
Q 014883           22 AFDLIVIGTGLPESVISAAA-SASGKSVLHLDPNPFYGSHFSSL   64 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~L-a~~G~~V~vlE~~~~~GG~~~s~   64 (416)
                      ...|+|||||.+||.||..| ++.|++|.|+|+.+.+||..+.-
T Consensus        39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~G   82 (506)
T PTZ00188         39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYG   82 (506)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEe
Confidence            45899999999999999975 56799999999999999998853

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=97.83  E-value=1.6e-05  Score=81.58  Aligned_cols=35  Identities=34%  Similarity=0.597  Sum_probs=33.2

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (416)
                      ..+||+||||+|.+|.++|.+|+++|++|+|||+.
T Consensus         5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG   39 (542)
T COG2303           5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAG   39 (542)
T ss_pred             cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCC
Confidence            45799999999999999999999999999999996

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=97.78  E-value=0.0012  Score=64.66  Aligned_cols=61  Identities=13%  Similarity=0.176  Sum_probs=46.9

Q ss_pred             EEeecCCc----chHHHHHHHHHHhc-CcEEEcCCceeEEEEecCCCcEEEEEeC-----CCcEEEcCEEEEC
Q 014883          271 LIYPIYGQ----GELPQAFCRRAAVK-GCLYVLRMPVISLLTDQNSGSYKGVRLA-----SGQDILSHKLVLD  333 (416)
Q Consensus       271 ~~~p~gG~----~~l~~al~r~~~~~-Gg~i~l~~~V~~I~~~~~~g~~~gV~l~-----~G~~i~Ad~VI~~  333 (416)
                      ..+...|+    ++|.+.|.+.+... |.+++++++|+.|.+.. +|. |.|++.     +.++++|+.|++.
T Consensus       169 at~~~~GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~-dg~-W~v~~~~~~~~~~~~v~a~FVfvG  239 (488)
T PF06039_consen  169 ATRVEEGTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNG-DGR-WEVKVKDLKTGEKREVRAKFVFVG  239 (488)
T ss_pred             eeecCCCccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECC-CCC-EEEEEEecCCCCeEEEECCEEEEC
Confidence            34666774    78999999888777 99999999999999973 553 566542     2357899999965

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.78  E-value=4.3e-05  Score=57.16  Aligned_cols=35  Identities=23%  Similarity=0.292  Sum_probs=33.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (416)
                      .|+|||||+.|+-+|..|++.|.+|+++|+++++.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~   35 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL   35 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence            38999999999999999999999999999999998

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=97.76  E-value=2.8e-05  Score=80.58  Aligned_cols=34  Identities=18%  Similarity=0.351  Sum_probs=31.8

Q ss_pred             cEEEECCChhHHHHHHHHh----hCCCeEEEEccCCCC
Q 014883           24 DLIVIGTGLPESVISAAAS----ASGKSVLHLDPNPFY   57 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La----~~G~~V~vlE~~~~~   57 (416)
                      ||||||+|.+||.||+.++    ++|.+|+|+||....
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~   38 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLE   38 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCC
Confidence            8999999999999999998    789999999998763

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=97.76  E-value=2.6e-05  Score=73.50  Aligned_cols=44  Identities=20%  Similarity=0.308  Sum_probs=41.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccccc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~   64 (416)
                      .+|||+|||+|.+|-.||...++.|.+...+|+|..+||-|-..
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnv   81 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNV   81 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeec
Confidence            47999999999999999999999999999999999999998754

>PRK13984 putative oxidoreductase; Provisional

Probab=97.74  E-value=4.3e-05  Score=79.84  Aligned_cols=43  Identities=12%  Similarity=0.100  Sum_probs=39.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (416)
                      ....+|+|||+|.+||+||..|++.|++|+|+|+.+.+||...
T Consensus       281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~  323 (604)
T PRK13984        281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR  323 (604)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence            3457999999999999999999999999999999999999764

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.73  E-value=3.4e-05  Score=77.93  Aligned_cols=41  Identities=17%  Similarity=0.184  Sum_probs=37.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccccc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~   64 (416)
                      .|+||||+|.+|+.||..|++.|++|+++|++ .+||.|...
T Consensus         2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~-~~gG~c~~~   42 (466)
T PRK07845          2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERD-GLGGAAVLT   42 (466)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCCccccc
Confidence            48999999999999999999999999999987 589988654

>TIGR00136 gidA glucose-inhibited division protein A

Probab=97.72  E-value=3.7e-05  Score=78.54  Aligned_cols=38  Identities=34%  Similarity=0.330  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (416)
                      |||||||+|++|+.||..+++.|.+|+++|++...+|.
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~   38 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGK   38 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccC
Confidence            79999999999999999999999999999998554443

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK07512 L-aspartate oxidase; Provisional

Probab=97.72  E-value=3.3e-05  Score=78.89  Aligned_cols=52  Identities=21%  Similarity=0.252  Sum_probs=41.2

Q ss_pred             chHHHHHHHHHHhc-CcEEEcCCceeEEEEecCCCcEEEEEeCC-Cc--EEEcCEEEE
Q 014883          279 GELPQAFCRRAAVK-GCLYVLRMPVISLLTDQNSGSYKGVRLAS-GQ--DILSHKLVL  332 (416)
Q Consensus       279 ~~l~~al~r~~~~~-Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~-G~--~i~Ad~VI~  332 (416)
                      ..+.++|.+.+... |++|+.+++|++|..+  +|++++|...+ ++  .+.|+.||+
T Consensus       136 ~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~~~~i~Ak~VVL  191 (513)
T PRK07512        136 AAIMRALIAAVRATPSITVLEGAEARRLLVD--DGAVAGVLAATAGGPVVLPARAVVL  191 (513)
T ss_pred             HHHHHHHHHHHHhCCCCEEEECcChhheeec--CCEEEEEEEEeCCeEEEEECCEEEE
Confidence            46888888877664 8999999999999876  78888887543 33  589999994

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=97.72  E-value=2.7e-05  Score=80.93  Aligned_cols=36  Identities=25%  Similarity=0.246  Sum_probs=33.3

Q ss_pred             EEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883           25 LIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (416)
Q Consensus        25 ViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (416)
                      |||||+|.+||+||+.++++|.+|+||||.+.+||.
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~g   36 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRRA   36 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCCc
Confidence            799999999999999999999999999999977643

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>TIGR01810 betA choline dehydrogenase

Probab=97.70  E-value=3.1e-05  Score=79.64  Aligned_cols=33  Identities=36%  Similarity=0.449  Sum_probs=31.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCC-CeEEEEccCCC
Q 014883           24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNPF   56 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G-~~V~vlE~~~~   56 (416)
                      |+||||+|.+|+++|.+|+++| ++|+|||+...
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~   34 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS   34 (532)
T ss_pred             CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence            8999999999999999999999 79999999864

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=97.69  E-value=3.6e-05  Score=71.52  Aligned_cols=47  Identities=21%  Similarity=0.330  Sum_probs=39.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhh----CCCeEEEEccCCCC---------CCcccccChh
Q 014883           21 TAFDLIVIGTGLPESVISAAASA----SGKSVLHLDPNPFY---------GSHFSSLSIA   67 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~----~G~~V~vlE~~~~~---------GG~~~s~~~~   67 (416)
                      .++||+|||+|..|++.|..|.+    .|.+|+|+|+++.|         ||.|..|.+.
T Consensus        85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQFSlp  144 (509)
T KOG2853|consen   85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQFSLP  144 (509)
T ss_pred             cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeecccc
Confidence            36899999999999999999854    57999999999975         6666666554

>TIGR03452 mycothione_red mycothione reductase

Probab=97.69  E-value=3.9e-05  Score=77.19  Aligned_cols=40  Identities=25%  Similarity=0.444  Sum_probs=34.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccccc
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~   64 (416)
                      +||+||||+|.+|..||.+  ++|++|+++|+ +.+||-|-.+
T Consensus         2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~-~~~GGtC~n~   41 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEK-GTFGGTCLNV   41 (452)
T ss_pred             CcCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCeeecc
Confidence            5999999999999998654  47999999998 5799998764

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK07846 mycothione reductase; Reviewed

Probab=97.69  E-value=4.1e-05  Score=77.01  Aligned_cols=40  Identities=25%  Similarity=0.487  Sum_probs=34.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccccc
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~   64 (416)
                      +||+||||+|.+|..||.+  ++|++|+++|+ +.+||-|-.+
T Consensus         1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~-~~~GGtC~n~   40 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDER--FADKRIAIVEK-GTFGGTCLNV   40 (451)
T ss_pred             CCCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCcccCc
Confidence            4899999999999988876  46999999998 5789988654

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=97.68  E-value=3.8e-05  Score=82.16  Aligned_cols=34  Identities=18%  Similarity=0.231  Sum_probs=32.2

Q ss_pred             cEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCC
Q 014883           24 DLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFY   57 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~   57 (416)
                      +|+|||||++||+||+.|++.  |++|+|+|++...
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~   37 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPY   37 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence            799999999999999999998  8999999999873

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=97.67  E-value=4.8e-05  Score=82.87  Aligned_cols=37  Identities=27%  Similarity=0.426  Sum_probs=34.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      ..++||||||+|.+||.||..++++|.+|+|+||...
T Consensus        11 ~~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~   47 (897)
T PRK13800         11 RLDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV   47 (897)
T ss_pred             eeecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            3468999999999999999999999999999999875

>PLN02785 Protein HOTHEAD

Probab=97.59  E-value=7.9e-05  Score=77.04  Aligned_cols=35  Identities=34%  Similarity=0.477  Sum_probs=32.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      ..||+||||+|.+|+++|.+|++ +++|+|||+...
T Consensus        54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~   88 (587)
T PLN02785         54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV   88 (587)
T ss_pred             ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence            36999999999999999999999 699999999764

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=97.58  E-value=6.8e-05  Score=73.51  Aligned_cols=56  Identities=16%  Similarity=0.134  Sum_probs=46.0

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCC--cEEEcCEEEEC-CCC
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG--QDILSHKLVLD-PSF  336 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G--~~i~Ad~VI~~-p~~  336 (416)
                      ..+.++|.+.++.+|++++.++.|+++..+  ++++++|.+.++  .+++||+||+. ...
T Consensus       263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~--~~~v~~V~t~~g~~~~l~AD~vVLAaGaw  321 (419)
T TIGR03378       263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFE--GNRVTRIHTRNHRDIPLRADHFVLASGSF  321 (419)
T ss_pred             HHHHHHHHHHHHHCCCEEEECcEEEEEEee--CCeEEEEEecCCccceEECCEEEEccCCC
Confidence            477888999999999999999999999987  777777876665  48999998843 444

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>COG4716 Myosin-crossreactive antigen [Function unknown]

Probab=97.52  E-value=0.00075  Score=63.72  Aligned_cols=44  Identities=18%  Similarity=0.294  Sum_probs=37.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhh----CCCeEEEEccCCCCCCccccc
Q 014883           21 TAFDLIVIGTGLPESVISAAASA----SGKSVLHLDPNPFYGSHFSSL   64 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~----~G~~V~vlE~~~~~GG~~~s~   64 (416)
                      +..-+-|||+|++||++|+.|-|    .|.++.++|--+..||..-..
T Consensus        21 dqKsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG~   68 (587)
T COG4716          21 DQKSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDGA   68 (587)
T ss_pred             ccceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCCC
Confidence            34678999999999999999965    579999999999999976543

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=97.46  E-value=0.00013  Score=67.25  Aligned_cols=47  Identities=23%  Similarity=0.307  Sum_probs=39.7

Q ss_pred             CCCCCcccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCCCCcccc
Q 014883           17 PIEPTAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        17 ~~~~~~~DViIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~GG~~~s   63 (416)
                      ++...+||.||||||+.||+.|+.|.-.  +.+|.|||+...++=..+.
T Consensus        43 s~s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSg   91 (453)
T KOG2665|consen   43 SISKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSG   91 (453)
T ss_pred             ccccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecc
Confidence            4556689999999999999999999877  9999999998877644443

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=97.42  E-value=0.00011  Score=72.57  Aligned_cols=35  Identities=37%  Similarity=0.519  Sum_probs=31.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (416)
                      +..|||||||||++|+-||.+.||.|.+++++=-+
T Consensus         2 ~~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~   36 (621)
T COG0445           2 PKEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLN   36 (621)
T ss_pred             CCCCceEEECCCccchHHHHhhhccCCeEEEEEcC
Confidence            45699999999999999999999999999998654

>PRK09897 hypothetical protein; Provisional

Probab=97.39  E-value=0.00018  Score=73.27  Aligned_cols=41  Identities=12%  Similarity=0.026  Sum_probs=35.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCC--CeEEEEccCCCCC-Ccccc
Q 014883           23 FDLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYG-SHFSS   63 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G--~~V~vlE~~~~~G-G~~~s   63 (416)
                      ++|+|||+|.+|+++|..|.+.+  .+|+|+|++..+| |...+
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays   45 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYS   45 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeec
Confidence            58999999999999999998865  4899999999999 65444

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=97.29  E-value=0.00021  Score=71.82  Aligned_cols=54  Identities=22%  Similarity=0.332  Sum_probs=42.5

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE-ECC
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDP  334 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI-~~p  334 (416)
                      +.+.+-|.+.|.+.|++++.++ |..+..++ +|.++.|++.+|++++||.|| ++.
T Consensus       154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~-~g~i~~v~~~~g~~i~ad~~IDASG  208 (454)
T PF04820_consen  154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDE-DGRITAVRLDDGRTIEADFFIDASG  208 (454)
T ss_dssp             HHHHHHHHHHHHHTT-EEEET--EEEEEE-T-TSEEEEEEETTSEEEEESEEEE-SG
T ss_pred             HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcC-CCCEEEEEECCCCEEEEeEEEECCC
Confidence            4677778888899999998875 88888873 888889999999999999999 653

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=97.23  E-value=0.00038  Score=64.42  Aligned_cols=43  Identities=23%  Similarity=0.239  Sum_probs=38.2

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (416)
                      ++.--|||||+|++||+|+-.+-..|-.|++||++...||...
T Consensus         7 ~~lspvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSi   49 (477)
T KOG2404|consen    7 AELSPVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSI   49 (477)
T ss_pred             ccCCcEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcce
Confidence            3333699999999999999999999999999999999999754

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=97.22  E-value=0.00039  Score=68.79  Aligned_cols=50  Identities=12%  Similarity=0.235  Sum_probs=39.6

Q ss_pred             hHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (416)
Q Consensus       280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (416)
                      .+.+.+.+.+++.|.++++++.|++|..   ++. +.|++.+|+++.||.||+.
T Consensus       187 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~---~~~-~~v~l~~g~~i~aD~Vv~a  236 (396)
T PRK09754        187 PVQRYLLQRHQQAGVRILLNNAIEHVVD---GEK-VELTLQSGETLQADVVIYG  236 (396)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCeeEEEEc---CCE-EEEEECCCCEEECCEEEEC
Confidence            4556677777889999999999999964   222 4677889999999999954

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.21  E-value=0.00034  Score=67.96  Aligned_cols=47  Identities=30%  Similarity=0.473  Sum_probs=38.4

Q ss_pred             CcCCCCCCC--CCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 014883            8 SELPVPPYP--PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (416)
Q Consensus         8 ~~~~~~~~~--~~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (416)
                      .-.|+||-+  ....+.|||||||||++|+-||++-|+-|-+.++|-.+
T Consensus        12 ~s~~~~Rr~~~~s~~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~   60 (679)
T KOG2311|consen   12 TSFPLPRRCVFSSSTSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN   60 (679)
T ss_pred             ccCcchhhhhcccCCCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence            345688833  33366899999999999999999999999999988664

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=97.19  E-value=0.00036  Score=68.44  Aligned_cols=33  Identities=27%  Similarity=0.416  Sum_probs=31.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (416)
                      ||+|||+|++||++|..|++. ++|+|+=|...-
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~   41 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLG   41 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCC
Confidence            999999999999999999999 999999988765

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=97.11  E-value=0.00047  Score=69.26  Aligned_cols=51  Identities=16%  Similarity=0.155  Sum_probs=39.4

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (416)
                      .++.+.+.+.++..|.++++++.|++|..   +++...|.+ +++++.||.||+.
T Consensus       191 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~---~~~~~~v~~-~~~~i~~d~vi~a  241 (444)
T PRK09564        191 KEITDVMEEELRENGVELHLNEFVKSLIG---EDKVEGVVT-DKGEYEADVVIVA  241 (444)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEec---CCcEEEEEe-CCCEEEcCEEEEC
Confidence            46777777888899999999999999953   344456664 5568999999954

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=97.11  E-value=0.00015  Score=62.99  Aligned_cols=40  Identities=13%  Similarity=0.150  Sum_probs=36.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCCCCccc
Q 014883           23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFS   62 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~GG~~~   62 (416)
                      -||||||+|-+||+||+..+++  ..+|.++|+.--+||-+|
T Consensus        77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaW  118 (328)
T KOG2960|consen   77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAW  118 (328)
T ss_pred             cceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccc
Confidence            5999999999999999999865  699999999999988765

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=97.01  E-value=0.0007  Score=66.91  Aligned_cols=40  Identities=25%  Similarity=0.354  Sum_probs=38.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (416)
                      .+|+|||+|..||.+|..|++.|++|+++|+.+++||...
T Consensus       137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~  176 (415)
T COG0446         137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL  176 (415)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhh
Confidence            5999999999999999999999999999999999999986

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=97.00  E-value=0.00093  Score=66.72  Aligned_cols=37  Identities=14%  Similarity=0.253  Sum_probs=33.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      +++.+|||||||++|+.+|..|.+.+++|+|+|++++
T Consensus         8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~   44 (424)
T PTZ00318          8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNH   44 (424)
T ss_pred             CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCC
Confidence            4567999999999999999999988999999999885

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=96.98  E-value=0.00082  Score=67.41  Aligned_cols=48  Identities=13%  Similarity=0.132  Sum_probs=38.2

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (416)
                      .++.+.+.+.+++.|.++++++.|++|.    ..   .|++++|+++.+|.||+.
T Consensus       189 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~----~~---~v~~~~g~~~~~D~vl~a  236 (438)
T PRK13512        189 ADMNQPILDELDKREIPYRLNEEIDAIN----GN---EVTFKSGKVEHYDMIIEG  236 (438)
T ss_pred             HHHHHHHHHHHHhcCCEEEECCeEEEEe----CC---EEEECCCCEEEeCEEEEC
Confidence            3567777788888999999999999984    22   356678889999999954

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=96.96  E-value=0.0011  Score=67.30  Aligned_cols=39  Identities=31%  Similarity=0.374  Sum_probs=35.3

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhC-CCeEEEEccCCCC
Q 014883           19 EPTAFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFY   57 (416)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~-G~~V~vlE~~~~~   57 (416)
                      ....||.||||||-+|++.|.+|++. -.+|++||+....
T Consensus        54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~   93 (623)
T KOG1238|consen   54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP   93 (623)
T ss_pred             cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence            35579999999999999999999998 7999999998776

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=96.96  E-value=0.00073  Score=62.80  Aligned_cols=40  Identities=25%  Similarity=0.320  Sum_probs=35.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (416)
                      .--|.|||||++|+-||+.++++|.+|.++|.++.=+--+
T Consensus         3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~Tpa   42 (439)
T COG1206           3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKGTPA   42 (439)
T ss_pred             CCceEEEcccccccHHHHHHHHcCCcEEEEEcccccCCCc
Confidence            3468999999999999999999999999999997766433

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.95  E-value=0.0014  Score=61.46  Aligned_cols=44  Identities=23%  Similarity=0.260  Sum_probs=41.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccccc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~   64 (416)
                      .+||..|||||-+|+++|++.+..|.+|.++|..-++||-|-..
T Consensus        19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~   62 (478)
T KOG0405|consen   19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNV   62 (478)
T ss_pred             cccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEee
Confidence            37999999999999999999999999999999999999988653

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=96.83  E-value=0.0011  Score=61.94  Aligned_cols=34  Identities=35%  Similarity=0.411  Sum_probs=31.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEcc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDP   53 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~   53 (416)
                      .-+||.||||+|-+||+||-..+..|.+|.+||-
T Consensus        17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDf   50 (503)
T KOG4716|consen   17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDF   50 (503)
T ss_pred             cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEee
Confidence            3479999999999999999999999999999996

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=96.58  E-value=0.0025  Score=54.23  Aligned_cols=36  Identities=22%  Similarity=0.352  Sum_probs=30.6

Q ss_pred             EEECCChhHHHHHHHHhhC-----CCeEEEEccCCCCC-Cccc
Q 014883           26 IVIGTGLPESVISAAASAS-----GKSVLHLDPNPFYG-SHFS   62 (416)
Q Consensus        26 iIIGaGl~GL~aA~~La~~-----G~~V~vlE~~~~~G-G~~~   62 (416)
                      +|||+|++|++++..|.+.     ..+|+|+|+++. | |...
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~-G~G~~~   42 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF-GAGGAY   42 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc-cccccC
Confidence            5999999999999999887     689999999665 5 5443

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=96.57  E-value=0.0082  Score=57.63  Aligned_cols=60  Identities=18%  Similarity=0.236  Sum_probs=49.7

Q ss_pred             EEeecCC---cchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883          271 LIYPIYG---QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (416)
Q Consensus       271 ~~~p~gG---~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (416)
                      ++.|.+|   ...+.+++.+.+.+.|++++.+++|+.|..+  ++++++|.+.+| +++||+||+.
T Consensus       126 ~~~~~~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~--~~~~~~v~~~~g-~~~a~~vV~a  188 (337)
T TIGR02352       126 VFYPDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIR--GEKVTAIVTPSG-DVQADQVVLA  188 (337)
T ss_pred             EEcCCCceEChHHHHHHHHHHHHHcCCEEEccceEEEEEee--CCEEEEEEcCCC-EEECCEEEEc
Confidence            5566666   3788999999999999999999999999986  677778886565 8999999943

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=96.47  E-value=0.0017  Score=59.30  Aligned_cols=45  Identities=9%  Similarity=0.162  Sum_probs=39.6

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCC------CeEEEEccCCCCCCccc
Q 014883           18 IEPTAFDLIVIGTGLPESVISAAASASG------KSVLHLDPNPFYGSHFS   62 (416)
Q Consensus        18 ~~~~~~DViIIGaGl~GL~aA~~La~~G------~~V~vlE~~~~~GG~~~   62 (416)
                      -+.....++|||+|+.|..+|++|++.+      ..++++|++...||...
T Consensus         6 r~~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSG   56 (380)
T KOG2852|consen    6 REGNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASG   56 (380)
T ss_pred             ccCCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccccccc
Confidence            3444579999999999999999999999      99999999999888654

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=96.44  E-value=0.0038  Score=59.91  Aligned_cols=42  Identities=29%  Similarity=0.500  Sum_probs=34.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhC----CCeEEEEccC--CCCCCccc
Q 014883           21 TAFDLIVIGTGLPESVISAAASAS----GKSVLHLDPN--PFYGSHFS   62 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~----G~~V~vlE~~--~~~GG~~~   62 (416)
                      ..|||||||||+.|++.|+.|..+    -+||++||..  +..|+--.
T Consensus        35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~   82 (481)
T KOG3855|consen   35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKP   82 (481)
T ss_pred             ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCcccccccc
Confidence            379999999999999999999864    4899999999  44444433

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.38  E-value=0.0039  Score=54.61  Aligned_cols=33  Identities=27%  Similarity=0.384  Sum_probs=27.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      .|.|||.|..||..|+.||++|++|+.+|.+..
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~   34 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE   34 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred             EEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence            689999999999999999999999999999864

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=96.33  E-value=0.0042  Score=60.64  Aligned_cols=48  Identities=19%  Similarity=0.219  Sum_probs=38.4

Q ss_pred             hHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECC
Q 014883          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP  334 (416)
Q Consensus       280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p  334 (416)
                      .+.+.+.+.+++.|.++++++.|++|.    .+   .|++.+|+++.+|.||+.+
T Consensus       192 ~~~~~~~~~l~~~gV~v~~~~~v~~i~----~~---~v~~~~g~~i~~D~vi~a~  239 (364)
T TIGR03169       192 KVRRLVLRLLARRGIEVHEGAPVTRGP----DG---ALILADGRTLPADAILWAT  239 (364)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCeeEEEc----CC---eEEeCCCCEEecCEEEEcc
Confidence            466777777889999999999999884    23   4666789999999999543

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=96.31  E-value=0.012  Score=57.43  Aligned_cols=56  Identities=18%  Similarity=0.238  Sum_probs=48.4

Q ss_pred             cchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCC
Q 014883          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS  335 (416)
Q Consensus       278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~  335 (416)
                      .-.+.+.|.+.++.+|++|++++.|..|+..  ++.+.+|.+++|++|.||+||+.|-
T Consensus       172 l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~--~~~~~~v~~~~g~~i~~~~vvlA~G  227 (486)
T COG2509         172 LPKVVKNIREYLESLGGEIRFNTEVEDIEIE--DNEVLGVKLTKGEEIEADYVVLAPG  227 (486)
T ss_pred             hHHHHHHHHHHHHhcCcEEEeeeEEEEEEec--CCceEEEEccCCcEEecCEEEEccC
Confidence            3466788888889999999999999999997  6667789999999999999997654

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=96.26  E-value=0.0055  Score=59.92  Aligned_cols=46  Identities=28%  Similarity=0.387  Sum_probs=37.4

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCc-EEEcCEEE
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ-DILSHKLV  331 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~-~i~Ad~VI  331 (416)
                      .++++...+..+++|.+|+++++|++|..+       +|++.+|+ +|.|+.||
T Consensus       209 ~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~-------~v~~~~g~~~I~~~tvv  255 (405)
T COG1252         209 PKLSKYAERALEKLGVEVLLGTPVTEVTPD-------GVTLKDGEEEIPADTVV  255 (405)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCceEEECCC-------cEEEccCCeeEecCEEE
Confidence            456666667788999999999999999642       46677887 49999999

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=96.20  E-value=0.0054  Score=58.29  Aligned_cols=45  Identities=9%  Similarity=-0.014  Sum_probs=39.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhh--CCCeEEEEccCCCCCCcccccC
Q 014883           21 TAFDLIVIGTGLPESVISAAASA--SGKSVLHLDPNPFYGSHFSSLS   65 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~--~G~~V~vlE~~~~~GG~~~s~~   65 (416)
                      +...|.|||+|.+|+.+|..|-+  .+..|.++|+.+.++|..+.--
T Consensus        19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGV   65 (468)
T KOG1800|consen   19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGV   65 (468)
T ss_pred             CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeecc
Confidence            34589999999999999998887  4899999999999999998644

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=96.05  E-value=0.0075  Score=59.66  Aligned_cols=39  Identities=13%  Similarity=0.131  Sum_probs=36.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (416)
                      -+|+|||+|+.|+-+|..|++.|.+|+++|+.+++.++.
T Consensus       145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~  183 (396)
T PRK09754        145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRN  183 (396)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhh
Confidence            369999999999999999999999999999999987654

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=95.93  E-value=0.042  Score=54.00  Aligned_cols=58  Identities=24%  Similarity=0.254  Sum_probs=47.5

Q ss_pred             EEeecCCc---chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 014883          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (416)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~  332 (416)
                      +++|.+|.   ..+.++|.+.+.. |++++.+++|++|..+  ++. +.|++.+|++++||+||+
T Consensus       124 l~~~~~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~--~~~-~~v~t~~g~~~~a~~vV~  184 (381)
T TIGR03197       124 LFFPQGGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERD--GEG-WQLLDANGEVIAASVVVL  184 (381)
T ss_pred             eEeCCCcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEc--CCe-EEEEeCCCCEEEcCEEEE
Confidence            55677774   6888999888888 9999999999999875  444 678888888899999994

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.90  E-value=0.0048  Score=57.91  Aligned_cols=40  Identities=20%  Similarity=0.345  Sum_probs=34.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (416)
                      ..|||.|||+|.+|-+||.+-||+|.+.=++  .+|.||...
T Consensus       210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~--aerfGGQvl  249 (520)
T COG3634         210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLV--AERFGGQVL  249 (520)
T ss_pred             CCceEEEEcCCcchhHHHHHHHhhcchhhhh--hhhhCCeec
Confidence            4699999999999999999999999998775  357888764

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.90  E-value=0.012  Score=59.85  Aligned_cols=34  Identities=21%  Similarity=0.236  Sum_probs=31.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      ..|+|||+|.+|+.+|..|++.|++|+++|+++.
T Consensus        17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~   50 (480)
T PRK01438         17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGDD   50 (480)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            4799999999999999999999999999998864

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.90  E-value=0.01  Score=58.46  Aligned_cols=40  Identities=25%  Similarity=0.521  Sum_probs=34.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhC----CCeEEEEccCCCCCCccc
Q 014883           22 AFDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPFYGSHFS   62 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~----G~~V~vlE~~~~~GG~~~   62 (416)
                      +++|+|||+|++|+..|..|.+.    ++ +.|+|+++..|+-..
T Consensus         1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~-Isi~e~~~~~G~Gia   44 (474)
T COG4529           1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGL-ISIFEPRPNFGQGIA   44 (474)
T ss_pred             CceEEEECCchHHHHHHHHHHhCCCCCCc-eEEeccccccCCCcc
Confidence            37999999999999999999774    34 999999999987654

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=95.88  E-value=0.011  Score=51.53  Aligned_cols=33  Identities=30%  Similarity=0.341  Sum_probs=28.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      .|.|||+|..|...|..++++|++|.++|.++.
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   33 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE   33 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            378999999999999999999999999999643

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=95.84  E-value=0.011  Score=57.98  Aligned_cols=51  Identities=18%  Similarity=0.236  Sum_probs=41.0

Q ss_pred             hHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (416)
Q Consensus       280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (416)
                      .+.+.+.+.++..|.+++++++|++|..+  ++. +.|++.+|+++.||.||+.
T Consensus       184 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~--~~~-~~v~~~~g~~i~~D~vI~a  234 (377)
T PRK04965        184 EVSSRLQHRLTEMGVHLLLKSQLQGLEKT--DSG-IRATLDSGRSIEVDAVIAA  234 (377)
T ss_pred             HHHHHHHHHHHhCCCEEEECCeEEEEEcc--CCE-EEEEEcCCcEEECCEEEEC
Confidence            45666777778899999999999999865  333 5677889999999999954

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=95.83  E-value=0.011  Score=50.29  Aligned_cols=32  Identities=22%  Similarity=0.313  Sum_probs=30.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      .|.|||||-.|.++|..|+++|++|.++.++.
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            48899999999999999999999999999976

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1

Probab=95.78  E-value=0.046  Score=53.21  Aligned_cols=112  Identities=20%  Similarity=0.193  Sum_probs=67.5

Q ss_pred             cCCcHHHHHHhcCCChhHHHHHHHHHHhccCCchhhhhhhchhhHHHHHHHHHhhhccccCCCccEEeecCCcchHHHHH
Q 014883          206 LDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAF  285 (416)
Q Consensus       206 ~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al  285 (416)
                      ...|+.+||++.+.++...+-+..+....+|.++.   +      +..+...+...+.   .+| .+-++||...|++.|
T Consensus        68 t~~t~~e~L~~~gi~~~fi~Elv~a~tRvNYgQ~~---~------i~a~~G~vSla~a---~~g-l~sV~GGN~qI~~~l  134 (368)
T PF07156_consen   68 TKVTGEEYLKENGISERFINELVQAATRVNYGQNV---N------IHAFAGLVSLAGA---TGG-LWSVEGGNWQIFEGL  134 (368)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHhheEeeccccc---c------hhhhhhheeeeec---cCC-ceEecCCHHHHHHHH
Confidence            45688999999999987775444443445565531   1      2223333322221   123 568999999999988


Q ss_pred             HHHHHhcCcEEEcCCceeEEEEecCCCc-EEEEEeCC--CcEE-EcCEEEECC
Q 014883          286 CRRAAVKGCLYVLRMPVISLLTDQNSGS-YKGVRLAS--GQDI-LSHKLVLDP  334 (416)
Q Consensus       286 ~r~~~~~Gg~i~l~~~V~~I~~~~~~g~-~~gV~l~~--G~~i-~Ad~VI~~p  334 (416)
                      .+   .-|+++ +++.|++|.....++. ...|...+  +... ..|.||++.
T Consensus       135 l~---~S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAt  183 (368)
T PF07156_consen  135 LE---ASGANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIAT  183 (368)
T ss_pred             HH---HccCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECC
Confidence            65   568899 9999999943212332 23444332  2223 459999653

8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=95.72  E-value=0.0053  Score=60.84  Aligned_cols=40  Identities=20%  Similarity=0.354  Sum_probs=36.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (416)
                      .|||+|||||-.|.-+|..-+-.|.+|.++|++|.--|-.
T Consensus        67 ~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTS  106 (680)
T KOG0042|consen   67 EFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTS  106 (680)
T ss_pred             cccEEEECCCccCcceeehhhcccceeEEEecccccCCcc
Confidence            4999999999999999999999999999999999865543

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=95.66  E-value=0.0081  Score=58.03  Aligned_cols=36  Identities=31%  Similarity=0.454  Sum_probs=28.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCC-CeEEEEccCCCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFY   57 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G-~~V~vlE~~~~~   57 (416)
                      .||+|+||.|+++|+.|+.|...+ .+++.||+++..
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f   38 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF   38 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS-
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence            589999999999999999999987 999999998753

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=95.60  E-value=0.016  Score=56.90  Aligned_cols=38  Identities=21%  Similarity=0.293  Sum_probs=34.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (416)
                      .+|+|||+|..|+-+|..|++.|.+|+++|+.+++..+
T Consensus       142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~  179 (377)
T PRK04965        142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLAS  179 (377)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccch
Confidence            47999999999999999999999999999999987644

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.59  E-value=0.014  Score=58.91  Aligned_cols=34  Identities=26%  Similarity=0.132  Sum_probs=31.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (416)
                      .|.|||.|.+|++||..|+++|++|++.|++...
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~   35 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP   35 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence            4899999999999999999999999999998765

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=95.47  E-value=0.018  Score=62.28  Aligned_cols=54  Identities=13%  Similarity=0.184  Sum_probs=41.9

Q ss_pred             hHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECC
Q 014883          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP  334 (416)
Q Consensus       280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p  334 (416)
                      .+.+.+.+.++..|.+|++++.|++|..+. ++....|++.+|+++.+|.||+.+
T Consensus       188 ~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~-~~~~~~v~~~dG~~i~~D~Vv~A~  241 (847)
T PRK14989        188 MGGEQLRRKIESMGVRVHTSKNTLEIVQEG-VEARKTMRFADGSELEVDFIVFST  241 (847)
T ss_pred             HHHHHHHHHHHHCCCEEEcCCeEEEEEecC-CCceEEEEECCCCEEEcCEEEECC
Confidence            345566677788999999999999997541 244567888899999999999543

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=95.45  E-value=0.02  Score=57.40  Aligned_cols=38  Identities=21%  Similarity=0.102  Sum_probs=35.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (416)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+++.++
T Consensus       158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~  195 (438)
T PRK07251        158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR  195 (438)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC
Confidence            47999999999999999999999999999999988655

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=95.37  E-value=0.019  Score=58.17  Aligned_cols=37  Identities=14%  Similarity=0.134  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      -+|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~  217 (472)
T PRK05976        181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILP  217 (472)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCC
Confidence            4799999999999999999999999999999988744

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.33  E-value=0.018  Score=54.85  Aligned_cols=33  Identities=24%  Similarity=0.398  Sum_probs=31.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      +|.|||+|+-|...|..|+++|++|+++|++..
T Consensus         4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~   36 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA   36 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence            699999999999999999999999999999864

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=95.24  E-value=0.023  Score=57.38  Aligned_cols=37  Identities=16%  Similarity=0.148  Sum_probs=34.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      .+|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~  207 (461)
T TIGR01350       171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP  207 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC
Confidence            4899999999999999999999999999999998764

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=95.18  E-value=0.029  Score=53.54  Aligned_cols=36  Identities=22%  Similarity=0.188  Sum_probs=32.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ++...|.|||+|.-|.+.|..|+++|++|+++.++.
T Consensus         3 ~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~   38 (313)
T PRK06249          3 SETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD   38 (313)
T ss_pred             CcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            344579999999999999999999999999998864

>TIGR02053 MerA mercuric reductase

Probab=95.14  E-value=0.025  Score=57.17  Aligned_cols=38  Identities=24%  Similarity=0.163  Sum_probs=34.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (416)
                      -+|+|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus       167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~  204 (463)
T TIGR02053       167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR  204 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc
Confidence            47999999999999999999999999999999887643

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=95.14  E-value=0.031  Score=47.01  Aligned_cols=31  Identities=26%  Similarity=0.503  Sum_probs=29.0

Q ss_pred             EEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           25 LIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        25 ViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      |.|+|+|-.|+..|++|+++|++|.++-++.
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence            6899999999999999999999999998864

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.10  E-value=0.031  Score=56.29  Aligned_cols=35  Identities=17%  Similarity=0.321  Sum_probs=32.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ....|+|||+|..|+.+|..|++.|++|+++|+++
T Consensus         4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            34689999999999999999999999999999975

>PRK06370 mercuric reductase; Validated

Probab=95.01  E-value=0.032  Score=56.37  Aligned_cols=38  Identities=18%  Similarity=0.210  Sum_probs=35.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (416)
                      -+|+|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus       172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~  209 (463)
T PRK06370        172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR  209 (463)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc
Confidence            47999999999999999999999999999999988764

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=94.98  E-value=0.03  Score=56.34  Aligned_cols=37  Identities=8%  Similarity=0.086  Sum_probs=34.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      -.|+|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~  203 (450)
T TIGR01421       167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR  203 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCc
Confidence            4799999999999999999999999999999998763

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=94.97  E-value=0.025  Score=60.95  Aligned_cols=51  Identities=14%  Similarity=0.299  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECC
Q 014883          281 LPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP  334 (416)
Q Consensus       281 l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p  334 (416)
                      +.+.+.+.++..|.++++++.|++|..   +++..+|++++|+++.+|.||+.+
T Consensus       184 ~~~~l~~~l~~~GV~v~~~~~v~~i~~---~~~~~~v~~~dG~~i~~D~Vi~a~  234 (785)
T TIGR02374       184 AGRLLQRELEQKGLTFLLEKDTVEIVG---ATKADRIRFKDGSSLEADLIVMAA  234 (785)
T ss_pred             HHHHHHHHHHHcCCEEEeCCceEEEEc---CCceEEEEECCCCEEEcCEEEECC
Confidence            445566777889999999999999974   345567888999999999999543

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=94.92  E-value=0.032  Score=56.34  Aligned_cols=38  Identities=24%  Similarity=0.242  Sum_probs=34.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (416)
                      -+++|||+|..|+-+|..|++.|.+|+++|+++++...
T Consensus       173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~  210 (462)
T PRK06416        173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG  210 (462)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc
Confidence            47999999999999999999999999999999987543

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=94.92  E-value=0.03  Score=55.71  Aligned_cols=34  Identities=29%  Similarity=0.283  Sum_probs=31.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      ..|.|||.|..|+..|..|+++|++|+++|.+..
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~   37 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH   37 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence            5799999999999999999999999999998654

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=94.90  E-value=0.033  Score=56.37  Aligned_cols=38  Identities=11%  Similarity=0.021  Sum_probs=34.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (416)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus       173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~  210 (466)
T PRK07818        173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPN  210 (466)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCc
Confidence            37999999999999999999999999999998877543

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=94.90  E-value=0.033  Score=56.45  Aligned_cols=38  Identities=16%  Similarity=0.082  Sum_probs=35.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (416)
                      -+++|||+|..|+-.|..|++.|.+|+++|+.+++...
T Consensus       175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~  212 (471)
T PRK06467        175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA  212 (471)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc
Confidence            47999999999999999999999999999999987643

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.88  E-value=0.035  Score=52.33  Aligned_cols=33  Identities=24%  Similarity=0.241  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ..|.|||+|..|...|..|+++|++|+++|.++
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~   36 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD   36 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            369999999999999999999999999999875

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=94.87  E-value=0.035  Score=56.08  Aligned_cols=37  Identities=19%  Similarity=0.259  Sum_probs=34.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      -+++|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~  207 (458)
T PRK06912        171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP  207 (458)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc
Confidence            4799999999999999999999999999999988754

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=94.86  E-value=0.036  Score=56.13  Aligned_cols=38  Identities=18%  Similarity=0.134  Sum_probs=34.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (416)
                      -.|+|||+|..|+-.|..|++.|.+|+++|+.+++...
T Consensus       175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~  212 (466)
T PRK06115        175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPG  212 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCC
Confidence            47999999999999999999999999999999987543

>PRK07846 mycothione reductase; Reviewed

Probab=94.85  E-value=0.036  Score=55.86  Aligned_cols=37  Identities=19%  Similarity=0.196  Sum_probs=34.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      -+++|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~  203 (451)
T PRK07846        167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLR  203 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc
Confidence            4799999999999999999999999999999998753

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.84  E-value=0.041  Score=51.98  Aligned_cols=34  Identities=26%  Similarity=0.249  Sum_probs=31.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ...|.|||+|.-|...|..|+++|++|+++|.+.
T Consensus         4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (292)
T PRK07530          4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA   37 (292)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            3479999999999999999999999999999874

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=94.81  E-value=0.11  Score=51.21  Aligned_cols=33  Identities=27%  Similarity=0.464  Sum_probs=31.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      |||+|||+|++|+++|..|+++|++|+++|+..
T Consensus         1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~   33 (419)
T TIGR03378         1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ   33 (419)
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            699999999999999999999999999999975

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=94.80  E-value=0.035  Score=55.74  Aligned_cols=38  Identities=11%  Similarity=0.049  Sum_probs=34.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (416)
                      -+++|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus       149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~  186 (438)
T PRK13512        149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKL  186 (438)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchh
Confidence            37999999999999999999999999999999987643

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=94.75  E-value=0.078  Score=46.80  Aligned_cols=51  Identities=22%  Similarity=0.166  Sum_probs=39.5

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~  332 (416)
                      .++.+-|.+.++.++.++++++.|++|..+  ++. +.|++.++++++||+||+
T Consensus        82 ~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~--~~~-w~v~~~~~~~~~a~~VVl  132 (203)
T PF13738_consen   82 EEVLDYLQEYAERFGLEIRFNTRVESVRRD--GDG-WTVTTRDGRTIRADRVVL  132 (203)
T ss_dssp             HHHHHHHHHHHHHTTGGEETS--EEEEEEE--TTT-EEEEETTS-EEEEEEEEE
T ss_pred             HHHHHHHHHHHhhcCcccccCCEEEEEEEe--ccE-EEEEEEecceeeeeeEEE
Confidence            345666777778888889999999999998  444 889998888999999994

...

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=94.74  E-value=0.041  Score=55.58  Aligned_cols=37  Identities=24%  Similarity=0.170  Sum_probs=34.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      -+++|||+|..|+-.|..|++.|.+|+++|+++++..
T Consensus       170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~  206 (460)
T PRK06292        170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP  206 (460)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc
Confidence            4799999999999999999999999999999998875

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.72  E-value=0.033  Score=52.50  Aligned_cols=33  Identities=24%  Similarity=0.284  Sum_probs=30.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      .|.|||+|..|...|..|+++|++|+++|.++.
T Consensus         3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~   35 (288)
T PRK09260          3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE   35 (288)
T ss_pred             EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence            589999999999999999999999999998854

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.69  E-value=0.042  Score=51.74  Aligned_cols=34  Identities=21%  Similarity=0.289  Sum_probs=31.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (416)
                      .|.|||+|..|..-|..|+++|++|+++|.++.-
T Consensus         7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~   40 (286)
T PRK07819          7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEEL   40 (286)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence            6999999999999999999999999999988653

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=94.65  E-value=0.041  Score=54.97  Aligned_cols=36  Identities=19%  Similarity=0.233  Sum_probs=33.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (416)
                      -.|+|||+|..|+-+|..|++.|.+|+++++.+++.
T Consensus       138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~  173 (427)
T TIGR03385       138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERIL  173 (427)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccC
Confidence            479999999999999999999999999999998874

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=94.64  E-value=0.047  Score=55.13  Aligned_cols=38  Identities=21%  Similarity=0.197  Sum_probs=35.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (416)
                      ..++|||+|..|+-.|..|++.|.+|+++|+++++...
T Consensus       176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~  213 (461)
T PRK05249        176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF  213 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc
Confidence            47999999999999999999999999999999988653

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=94.62  E-value=0.04  Score=49.91  Aligned_cols=33  Identities=24%  Similarity=0.433  Sum_probs=31.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      +++|||+|--|.+.|..|++.|+.|+++|+++.
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~   34 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE   34 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence            689999999999999999999999999999753

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=94.55  E-value=0.041  Score=59.35  Aligned_cols=37  Identities=22%  Similarity=0.145  Sum_probs=33.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      ..|+|||+|+.|+-+|..|++.|.+|+|+|+.+++-.
T Consensus       141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~  177 (785)
T TIGR02374       141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMA  177 (785)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhh
Confidence            3699999999999999999999999999999888744

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=94.54  E-value=0.22  Score=48.59  Aligned_cols=57  Identities=23%  Similarity=0.373  Sum_probs=46.2

Q ss_pred             EEeecC-CcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCC-cEEEcCEEEE
Q 014883          271 LIYPIY-GQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG-QDILSHKLVL  332 (416)
Q Consensus       271 ~~~p~g-G~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G-~~i~Ad~VI~  332 (416)
                      ..||.- -++++.++|.+.++..|++|+++++|++|  +  ++. ..|++.++ ++++||+||+
T Consensus        77 rvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~--~~~-~~v~~~~~~~~~~a~~vIl  135 (376)
T TIGR03862        77 RVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--Q--GGT-LRFETPDGQSTIEADAVVL  135 (376)
T ss_pred             EECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--e--CCc-EEEEECCCceEEecCEEEE
Confidence            578855 48899999999999999999999999999  3  333 56776443 5799999994

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=94.44  E-value=0.05  Score=55.18  Aligned_cols=38  Identities=24%  Similarity=0.269  Sum_probs=34.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (416)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+++++...
T Consensus       184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~  221 (475)
T PRK06327        184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA  221 (475)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc
Confidence            48999999999999999999999999999999987543

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.36  E-value=0.05  Score=51.12  Aligned_cols=34  Identities=24%  Similarity=0.286  Sum_probs=31.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      ..|.|||+|..|...|..|+++|++|+++|.++.
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~   37 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA   37 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence            3699999999999999999999999999997654

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.33  E-value=0.066  Score=51.10  Aligned_cols=34  Identities=35%  Similarity=0.380  Sum_probs=31.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      ..|.|||+|..|..-|..++.+|++|+++|.++.
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~   41 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG   41 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            3699999999999999999999999999998753

>TIGR03452 mycothione_red mycothione reductase

Probab=94.21  E-value=0.058  Score=54.34  Aligned_cols=37  Identities=19%  Similarity=0.207  Sum_probs=34.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      ..++|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus       170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~  206 (452)
T TIGR03452       170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR  206 (452)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc
Confidence            4799999999999999999999999999999988754

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=94.18  E-value=0.053  Score=52.22  Aligned_cols=32  Identities=31%  Similarity=0.438  Sum_probs=30.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ++.|||+|..||+.|+.||+.|++|+.+|...
T Consensus         2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~   33 (414)
T COG1004           2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE   33 (414)
T ss_pred             ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence            68999999999999999999999999999865

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=94.14  E-value=0.057  Score=55.37  Aligned_cols=36  Identities=19%  Similarity=0.084  Sum_probs=33.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (416)
                      .+|+|||+|..|+-+|..|++.|.+|+++|+.+++.
T Consensus       353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~  388 (515)
T TIGR03140       353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK  388 (515)
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC
Confidence            489999999999999999999999999999988774

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK04148 hypothetical protein; Provisional

Probab=94.14  E-value=0.046  Score=44.85  Aligned_cols=33  Identities=21%  Similarity=0.234  Sum_probs=30.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      ..+++||.| .|...|..|++.|++|+.+|-++.
T Consensus        18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~   50 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK   50 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence            469999999 888889999999999999999877

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=94.01  E-value=0.067  Score=53.69  Aligned_cols=37  Identities=22%  Similarity=0.217  Sum_probs=34.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      -.|+|||+|..|+-+|..|++.|.+|+++++.+++.+
T Consensus       150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~  186 (444)
T PRK09564        150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILP  186 (444)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCc
Confidence            4699999999999999999999999999999887654

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=93.98  E-value=0.081  Score=53.56  Aligned_cols=39  Identities=21%  Similarity=0.196  Sum_probs=35.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (416)
                      -.++|||+|..|+-.|..|++.|.+|+++|+.+++....
T Consensus       178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~  216 (466)
T PRK07845        178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGE  216 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCC
Confidence            379999999999999999999999999999999887653

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=93.93  E-value=0.071  Score=50.32  Aligned_cols=34  Identities=21%  Similarity=0.194  Sum_probs=31.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      ..|.|||+|.-|...|..|+++|++|+++|.++.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~   37 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE   37 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            3699999999999999999999999999998764

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=93.90  E-value=0.07  Score=53.71  Aligned_cols=34  Identities=24%  Similarity=0.157  Sum_probs=32.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      -.|+|||+|..|+-+|..|++.|.+|++++++++
T Consensus       273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~  306 (449)
T TIGR01316       273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTR  306 (449)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCc
Confidence            4799999999999999999999999999999876

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=93.90  E-value=0.067  Score=57.99  Aligned_cols=36  Identities=19%  Similarity=0.179  Sum_probs=33.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      .++|||+|+.|+-+|..|++.|.+|+|+|..+++-.
T Consensus       147 ~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~  182 (847)
T PRK14989        147 RGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMA  182 (847)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchh
Confidence            689999999999999999999999999999987644

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=93.85  E-value=0.089  Score=45.27  Aligned_cols=33  Identities=24%  Similarity=0.321  Sum_probs=29.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ..|+|+|+|..|+.||..|...|.+|+++|.+.
T Consensus        21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~   53 (168)
T PF01262_consen   21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP   53 (168)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred             eEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence            589999999999999999999999999999853

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=93.85  E-value=0.074  Score=55.91  Aligned_cols=38  Identities=16%  Similarity=0.162  Sum_probs=35.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (416)
                      -+|+|||+|..|+-.|..|++.|.+|+++|+.+++...
T Consensus       313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~  350 (659)
T PTZ00153        313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPL  350 (659)
T ss_pred             CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccc
Confidence            37999999999999999999999999999999998753

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=93.81  E-value=0.048  Score=50.66  Aligned_cols=43  Identities=26%  Similarity=0.407  Sum_probs=38.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccC--------CCCCCcccccC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN--------PFYGSHFSSLS   65 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~--------~~~GG~~~s~~   65 (416)
                      -+|+|||+|..|.-||....--|-+|+++|.|        +.+|||..+..
T Consensus       169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~  219 (371)
T COG0686         169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLY  219 (371)
T ss_pred             ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEE
Confidence            58999999999999999999999999999999        67788877654

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=93.80  E-value=0.08  Score=53.27  Aligned_cols=37  Identities=11%  Similarity=0.117  Sum_probs=33.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      -.++|||+|..|+-.|..|++.|.+|+++|+.+++-.
T Consensus       167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~  203 (446)
T TIGR01424       167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILR  203 (446)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCc
Confidence            3699999999999999999999999999999888643

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PTZ00058 glutathione reductase; Provisional

Probab=93.77  E-value=0.074  Score=54.93  Aligned_cols=37  Identities=8%  Similarity=0.012  Sum_probs=34.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      -.|+|||+|..|+-.|..|++.|.+|+++|+++++..
T Consensus       238 k~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~  274 (561)
T PTZ00058        238 KRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLR  274 (561)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccc
Confidence            4799999999999999999999999999999998763

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=93.76  E-value=0.078  Score=50.21  Aligned_cols=32  Identities=19%  Similarity=0.356  Sum_probs=29.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      .|.|||+|-.|...|..|+++|++|++++++.
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~   33 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG   33 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence            58999999999999999999999999999853

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=93.71  E-value=0.087  Score=52.73  Aligned_cols=38  Identities=16%  Similarity=0.159  Sum_probs=35.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (416)
                      .++|||||.-|+=.|..+++-|-+|+|+|+++++--..
T Consensus       175 ~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~~  212 (454)
T COG1249         175 SLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGE  212 (454)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCcC
Confidence            59999999999999999999999999999999987633

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=93.70  E-value=0.15  Score=50.61  Aligned_cols=36  Identities=33%  Similarity=0.577  Sum_probs=33.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      ||||||+|++||+||+.++++|.+|+|+||.+.+||
T Consensus         1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg   36 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGG   36 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGS
T ss_pred             CEEEECCCHHHHHHHHHHhhhcCeEEEEEeeccccc
Confidence            899999999999999999999999999999999999

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=93.69  E-value=0.1  Score=49.38  Aligned_cols=33  Identities=36%  Similarity=0.456  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ..|.|||+|.-|...|..|+++|++|.++|.+.
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~   37 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP   37 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            369999999999999999999999999999875

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=93.68  E-value=0.078  Score=54.41  Aligned_cols=35  Identities=23%  Similarity=0.140  Sum_probs=33.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (416)
                      .+|+|||||.+|+-+|..|+..|.+|+++++.+++
T Consensus       352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l  386 (517)
T PRK15317        352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPEL  386 (517)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccc
Confidence            48999999999999999999999999999998876

>PRK10262 thioredoxin reductase; Provisional

Probab=93.67  E-value=0.089  Score=50.34  Aligned_cols=35  Identities=17%  Similarity=0.085  Sum_probs=32.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (416)
                      -.|+|||+|..|+-+|..|++.|.+|+++++++.+
T Consensus       147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~  181 (321)
T PRK10262        147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF  181 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCcc
Confidence            47999999999999999999999999999998875

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=93.65  E-value=0.12  Score=44.43  Aligned_cols=34  Identities=12%  Similarity=0.122  Sum_probs=30.6

Q ss_pred             CcccEEEECCCh-hHHHHHHHHhhCCCeEEEEccC
Q 014883           21 TAFDLIVIGTGL-PESVISAAASASGKSVLHLDPN   54 (416)
Q Consensus        21 ~~~DViIIGaGl-~GL~aA~~La~~G~~V~vlE~~   54 (416)
                      ....|+|||+|- .|..+|..|.+.|.+|.++.++
T Consensus        43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~   77 (168)
T cd01080          43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK   77 (168)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence            357899999995 7999999999999999999986

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.64  E-value=0.093  Score=50.01  Aligned_cols=33  Identities=30%  Similarity=0.342  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ..|.|||+|..|...|..|+++|++|+++|.+.
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~   37 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME   37 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            369999999999999999999999999999765

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=93.62  E-value=0.23  Score=50.48  Aligned_cols=41  Identities=15%  Similarity=0.214  Sum_probs=36.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCCCCcccc
Q 014883           23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~GG~~~s   63 (416)
                      +||||||||+.|+++|+.|++.  |.+|+|||+.+.+|...+.
T Consensus         1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a~~~S~   43 (483)
T TIGR01320         1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVAAESSN   43 (483)
T ss_pred             CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcchhhhCC
Confidence            6999999999999999999997  9999999999888754444

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=93.58  E-value=0.075  Score=52.85  Aligned_cols=33  Identities=24%  Similarity=0.284  Sum_probs=30.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      .|.|||.|..|+..|..|+++|++|+++|++..
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~   34 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE   34 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence            589999999999999999999999999998764

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=93.56  E-value=0.083  Score=51.33  Aligned_cols=34  Identities=21%  Similarity=0.239  Sum_probs=31.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCe-EEEEccCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKS-VLHLDPNPF   56 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~-V~vlE~~~~   56 (416)
                      -.|+|||+|..|+-+|..|++.|.+ |+|++++++
T Consensus       173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~  207 (352)
T PRK12770        173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTI  207 (352)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecch
Confidence            3699999999999999999999997 999998765

>PLN02507 glutathione reductase

Probab=93.54  E-value=0.092  Score=53.61  Aligned_cols=36  Identities=14%  Similarity=0.052  Sum_probs=33.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (416)
                      -+|+|||+|..|+-.|..|++.|.+|+++|+.+++-
T Consensus       204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l  239 (499)
T PLN02507        204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL  239 (499)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC
Confidence            479999999999999999999999999999998764

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=93.50  E-value=0.086  Score=54.59  Aligned_cols=35  Identities=20%  Similarity=0.316  Sum_probs=32.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (416)
                      -.|+|||+|..|+-.|..|++.|.+|+++++.++.
T Consensus       144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~  178 (555)
T TIGR03143       144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDF  178 (555)
T ss_pred             CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcc
Confidence            47999999999999999999999999999998865

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=93.39  E-value=0.1  Score=49.59  Aligned_cols=33  Identities=15%  Similarity=0.206  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      .+|.|||+|--|...|++|+++|.+|+++.+..
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~   35 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR   35 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence            479999999999999999999999999999863

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=93.31  E-value=0.092  Score=50.72  Aligned_cols=32  Identities=19%  Similarity=0.305  Sum_probs=30.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      +|.|||+|.-|...|..|+++|++|.+++++.
T Consensus         4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~   35 (341)
T PRK08229          4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRAR   35 (341)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence            69999999999999999999999999999753

>PRK06116 glutathione reductase; Validated

Probab=93.30  E-value=0.11  Score=52.29  Aligned_cols=36  Identities=11%  Similarity=0.041  Sum_probs=33.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (416)
                      -.|+|||+|..|+-.|..|++.|.+|+++++++++.
T Consensus       168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l  203 (450)
T PRK06116        168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL  203 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc
Confidence            479999999999999999999999999999988764

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=93.29  E-value=0.11  Score=49.42  Aligned_cols=32  Identities=22%  Similarity=0.377  Sum_probs=29.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCC--CeEEEEccCC
Q 014883           24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNP   55 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G--~~V~vlE~~~   55 (416)
                      +|.|||+|..|+++|..|++.|  ..|.++|.+.
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~   35 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK   35 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence            6999999999999999999999  6899999874

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=93.29  E-value=0.23  Score=50.56  Aligned_cols=62  Identities=18%  Similarity=0.187  Sum_probs=45.3

Q ss_pred             cEEeecCC---cchHHHHHHHHHHhcC-cEEEcCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEEC
Q 014883          270 ALIYPIYG---QGELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVLD  333 (416)
Q Consensus       270 ~~~~p~gG---~~~l~~al~r~~~~~G-g~i~l~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~Ad~VI~~  333 (416)
                      +.+.|.+|   ...+.++|.+.++..| ++|+++++|++|..+. ++. +.|++   .+|+  +++|++||+.
T Consensus       171 Al~~p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~-dg~-~~v~~~~~~~G~~~~i~A~~VVva  241 (494)
T PRK05257        171 ATRIEIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRND-DGS-WTVTVKDLKTGEKRTVRAKFVFIG  241 (494)
T ss_pred             EEEcCCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECC-CCC-EEEEEEEcCCCceEEEEcCEEEEC
Confidence            45567766   3589999999888887 6999999999998752 443 34443   3354  6999999843

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=93.28  E-value=0.12  Score=52.01  Aligned_cols=38  Identities=16%  Similarity=0.196  Sum_probs=34.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (416)
                      -.|+|||+|..|+-.|..|++.|.+|+++|+++++...
T Consensus       159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~  196 (441)
T PRK08010        159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR  196 (441)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC
Confidence            37999999999999999999999999999999887644

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=93.26  E-value=0.25  Score=50.71  Aligned_cols=59  Identities=22%  Similarity=0.289  Sum_probs=46.5

Q ss_pred             EEeecCCc---chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeC---CC--cEEEcCEEEE
Q 014883          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SG--QDILSHKLVL  332 (416)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~---~G--~~i~Ad~VI~  332 (416)
                      +.++ .|.   ..+..++++.+.++|++|+.+++|++|..+  ++++++|++.   +|  .+|+|+.||.
T Consensus       118 ~~~~-dg~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~--~~~v~gv~v~~~~~g~~~~i~a~~VVn  184 (516)
T TIGR03377       118 VKVP-DGTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIRE--GGRVTGVKVEDHKTGEEERIEAQVVIN  184 (516)
T ss_pred             EEeC-CcEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEE--CCEEEEEEEEEcCCCcEEEEEcCEEEE
Confidence            5566 452   577888999999999999999999999986  6777777753   34  3689999993

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK12831 putative oxidoreductase; Provisional

Probab=93.26  E-value=0.1  Score=52.71  Aligned_cols=34  Identities=18%  Similarity=0.063  Sum_probs=31.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      -.|+|||+|..|+-+|..|++.|.+|++++++++
T Consensus       282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~  315 (464)
T PRK12831        282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSE  315 (464)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCc
Confidence            4899999999999999999999999999998765

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=93.17  E-value=0.11  Score=49.34  Aligned_cols=30  Identities=20%  Similarity=0.331  Sum_probs=28.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEcc
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDP   53 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~   53 (416)
                      .|.|||+|.-|...|..|+++|++|+++.+
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            589999999999999999999999999987

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.10  E-value=0.14  Score=49.23  Aligned_cols=33  Identities=21%  Similarity=0.355  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ..|.|||+|--|...|..|+++|++|.+++++.
T Consensus         5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~   37 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRP   37 (328)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            479999999999999999999999999999864

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=93.10  E-value=0.14  Score=48.71  Aligned_cols=34  Identities=18%  Similarity=0.157  Sum_probs=30.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEEccCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPF   56 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~-~V~vlE~~~~   56 (416)
                      ..|.|||+|..|+..|..|+..|+ +|+++|.++.
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~   36 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEG   36 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence            369999999999999999999887 8999998543

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=93.01  E-value=0.11  Score=52.30  Aligned_cols=34  Identities=18%  Similarity=0.163  Sum_probs=29.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCC
Q 014883           23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPF   56 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~   56 (416)
                      +.|.|||+|..||..|+.||++  |++|+.+|.+..
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~   37 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP   37 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence            3699999999999999999998  588999997653

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=92.97  E-value=0.31  Score=49.12  Aligned_cols=34  Identities=24%  Similarity=0.384  Sum_probs=28.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCC---CeEEEEccCCCC
Q 014883           24 DLIVIGTGLPESVISAAASASG---KSVLHLDPNPFY   57 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G---~~V~vlE~~~~~   57 (416)
                      ||||||+|.+|.++|+.|++.+   .+|+|+|+.+.+
T Consensus         1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~   37 (454)
T PF04820_consen    1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIP   37 (454)
T ss_dssp             EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS-
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCC
Confidence            7999999999999999999999   999999998653

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PLN02546 glutathione reductase

Probab=92.96  E-value=0.13  Score=53.18  Aligned_cols=37  Identities=8%  Similarity=-0.029  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      -+|+|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus       253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~  289 (558)
T PLN02546        253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLR  289 (558)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccc
Confidence            4799999999999999999999999999999988754

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=92.89  E-value=0.13  Score=48.26  Aligned_cols=35  Identities=14%  Similarity=0.110  Sum_probs=32.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (416)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++.+.+
T Consensus       142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~  176 (300)
T TIGR01292       142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKF  176 (300)
T ss_pred             CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCccc
Confidence            48999999999999999999999999999998765

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=92.89  E-value=0.11  Score=45.95  Aligned_cols=42  Identities=17%  Similarity=0.300  Sum_probs=34.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEcc---CCCC-CCccccc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDP---NPFY-GSHFSSL   64 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~---~~~~-GG~~~s~   64 (416)
                      -.|+|||+|.++-+||++++++-.+-+++|-   ++.. ||...|-
T Consensus         9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTT   54 (322)
T KOG0404|consen    9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTT   54 (322)
T ss_pred             eeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeee
Confidence            4899999999999999999999999999994   3333 6665553

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=92.87  E-value=0.15  Score=45.50  Aligned_cols=35  Identities=11%  Similarity=0.092  Sum_probs=31.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      +...|+|||||-.|+..+..|.+.|.+|+|+..+.
T Consensus         8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~   42 (205)
T TIGR01470         8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL   42 (205)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            34589999999999999999999999999998753

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=92.79  E-value=0.15  Score=48.86  Aligned_cols=32  Identities=19%  Similarity=0.370  Sum_probs=30.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      +|.|||+|.-|...|..|+++|++|.+++++.
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~   34 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP   34 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            69999999999999999999999999999864

>PRK13748 putative mercuric reductase; Provisional

Probab=92.78  E-value=0.14  Score=53.15  Aligned_cols=34  Identities=24%  Similarity=0.253  Sum_probs=31.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      -.++|||+|..|+-.|..|++.|.+|++++++..
T Consensus       271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~  304 (561)
T PRK13748        271 ERLAVIGSSVVALELAQAFARLGSKVTILARSTL  304 (561)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCcc
Confidence            3799999999999999999999999999998643

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=92.76  E-value=0.12  Score=47.76  Aligned_cols=33  Identities=15%  Similarity=0.088  Sum_probs=27.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCC-------CeEEEEccC
Q 014883           22 AFDLIVIGTGLPESVISAAASASG-------KSVLHLDPN   54 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G-------~~V~vlE~~   54 (416)
                      ..+++|||+|..||+.|..+.+.+       .+|.|++-+
T Consensus         3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Dr   42 (342)
T KOG3923|consen    3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDR   42 (342)
T ss_pred             CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCC
Confidence            469999999999999999888855       567777654

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=92.74  E-value=0.39  Score=50.04  Aligned_cols=53  Identities=23%  Similarity=0.300  Sum_probs=42.8

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeC-CCc--EEEc-CEEEEC
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQ--DILS-HKLVLD  333 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~-~G~--~i~A-d~VI~~  333 (416)
                      ..|.++|.+.++..|++|+++++|++|+.+  ++++++|+.. +++  +++| +.||+.
T Consensus       217 ~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~--~g~v~GV~~~~~~~~~~i~a~k~VVlA  273 (581)
T PRK06134        217 NALVARLLKSAEDLGVRIWESAPARELLRE--DGRVAGAVVETPGGLQEIRARKGVVLA  273 (581)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEe--CCEEEEEEEEECCcEEEEEeCCEEEEc
Confidence            468899999999999999999999999886  7888887653 333  4789 888843

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=92.72  E-value=0.17  Score=49.65  Aligned_cols=41  Identities=17%  Similarity=0.376  Sum_probs=34.9

Q ss_pred             CCCCCCCcccEEEEC-CChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           15 YPPIEPTAFDLIVIG-TGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        15 ~~~~~~~~~DViIIG-aGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      +.++++....|.||| .|+-|-..|..|+++|+.|.++++++
T Consensus        91 ~~~~~~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~  132 (374)
T PRK11199         91 FKTLNPDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD  132 (374)
T ss_pred             ccccCcccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence            344555556899999 89999999999999999999999864

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=92.71  E-value=0.17  Score=43.18  Aligned_cols=33  Identities=24%  Similarity=0.334  Sum_probs=28.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ..|-|||.|..|...|..|.++|++|.+++++.
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~   34 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP   34 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence            478999999999999999999999999999764

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=92.71  E-value=0.17  Score=48.10  Aligned_cols=33  Identities=24%  Similarity=0.310  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ..|.|||+|.-|...|..|+++|++|.+++++.
T Consensus         5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~   37 (308)
T PRK14619          5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRS   37 (308)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            479999999999999999999999999999875

>PRK14694 putative mercuric reductase; Provisional

Probab=92.68  E-value=0.16  Score=51.38  Aligned_cols=33  Identities=24%  Similarity=0.256  Sum_probs=30.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      -.++|||+|..|+-.|..|++.|.+|+++++..
T Consensus       179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~  211 (468)
T PRK14694        179 ERLLVIGASVVALELAQAFARLGSRVTVLARSR  211 (468)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEECCC
Confidence            469999999999999999999999999999743

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=92.59  E-value=0.57  Score=46.40  Aligned_cols=60  Identities=15%  Similarity=0.189  Sum_probs=43.5

Q ss_pred             cEEeecCCc---chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCC-----cEEEcCEEEE
Q 014883          270 ALIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG-----QDILSHKLVL  332 (416)
Q Consensus       270 ~~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G-----~~i~Ad~VI~  332 (416)
                      ++++|..|.   ..+.++|.+.++..|++|+.+++|++|..+  ++. +.|.+.++     .+++||+||+
T Consensus       185 a~~~~~~g~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~--~~~-~~v~~~~~~~~~~~~i~a~~vV~  252 (410)
T PRK12409        185 GYYTPSDSTGDIHKFTTGLAAACARLGVQFRYGQEVTSIKTD--GGG-VVLTVQPSAEHPSRTLEFDGVVV  252 (410)
T ss_pred             EEEcCCCCccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEe--CCE-EEEEEEcCCCCccceEecCEEEE
Confidence            355666554   356788889899999999999999999875  444 33433332     3799999994

>TIGR00518 alaDH alanine dehydrogenase

Probab=92.58  E-value=0.16  Score=49.74  Aligned_cols=34  Identities=29%  Similarity=0.340  Sum_probs=31.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ..+|+|||+|-.|+.+|..|.+.|.+|.++|++.
T Consensus       167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~  200 (370)
T TIGR00518       167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI  200 (370)
T ss_pred             CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            3579999999999999999999999999999863

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=92.50  E-value=0.11  Score=40.81  Aligned_cols=37  Identities=16%  Similarity=0.238  Sum_probs=31.8

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      +.+...|+|||+|-.|..-+..|.++|.+|+|+-...
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~   40 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI   40 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence            3455789999999999999999999999999998875

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.50  E-value=0.16  Score=51.36  Aligned_cols=32  Identities=19%  Similarity=0.299  Sum_probs=30.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      .|.|+|.|.+|+++|..|.+.|++|.+.|.++
T Consensus        16 ~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~   47 (458)
T PRK01710         16 KVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS   47 (458)
T ss_pred             eEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence            69999999999999999999999999999875

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=92.48  E-value=0.22  Score=48.71  Aligned_cols=42  Identities=19%  Similarity=0.252  Sum_probs=37.0

Q ss_pred             CCCCCCCCCcccEEEECC-ChhHHHHHHHHhhCCCeEEEEccC
Q 014883           13 PPYPPIEPTAFDLIVIGT-GLPESVISAAASASGKSVLHLDPN   54 (416)
Q Consensus        13 ~~~~~~~~~~~DViIIGa-Gl~GL~aA~~La~~G~~V~vlE~~   54 (416)
                      |+-++++.....|+|.|+ |+-|...+..|.++|++|+.+.++
T Consensus        12 ~~~~~~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~   54 (370)
T PLN02695         12 EREPYWPSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWK   54 (370)
T ss_pred             CCCCCCCCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEec
Confidence            556667767788999998 999999999999999999999875

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=92.44  E-value=0.16  Score=49.12  Aligned_cols=39  Identities=26%  Similarity=0.326  Sum_probs=35.0

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCC-CeEEEEccCCCC
Q 014883           19 EPTAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFY   57 (416)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G-~~V~vlE~~~~~   57 (416)
                      ++..+|+|.||-|..-|..|+.|+..+ .+++.||+.+.+
T Consensus         2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F   41 (436)
T COG3486           2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF   41 (436)
T ss_pred             CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence            466799999999999999999999976 889999998764

>PRK07121 hypothetical protein; Validated

Probab=92.41  E-value=0.39  Score=48.93  Aligned_cols=55  Identities=27%  Similarity=0.396  Sum_probs=43.9

Q ss_pred             CcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCC-Cc--EEEc-CEEEE
Q 014883          277 GQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS-GQ--DILS-HKLVL  332 (416)
Q Consensus       277 G~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~-G~--~i~A-d~VI~  332 (416)
                      +...+.+.|.+.+++.|++|+++++|++|.++ ++|++++|+..+ ++  .++| +.||+
T Consensus       175 ~g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~-~~g~v~Gv~~~~~~~~~~i~a~k~VVl  233 (492)
T PRK07121        175 GGAMLMDPLAKRAAALGVQIRYDTRATRLIVD-DDGRVVGVEARRYGETVAIRARKGVVL  233 (492)
T ss_pred             chHHHHHHHHHHHHhCCCEEEeCCEEEEEEEC-CCCCEEEEEEEeCCcEEEEEeCCEEEE
Confidence            34578899999899999999999999999986 257888887543 33  4789 88884

>PRK14727 putative mercuric reductase; Provisional

Probab=92.38  E-value=0.19  Score=51.06  Aligned_cols=33  Identities=27%  Similarity=0.309  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      -.|+|||+|..|+-.|..|++.|.+|+++++..
T Consensus       189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~  221 (479)
T PRK14727        189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARST  221 (479)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC
Confidence            369999999999999999999999999999754

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=92.23  E-value=0.18  Score=41.66  Aligned_cols=32  Identities=28%  Similarity=0.468  Sum_probs=28.1

Q ss_pred             EEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           25 LIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        25 ViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      ++|+|+|.-+...|..++.-|++|+|+|-+..
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e   32 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE   32 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence            58999999999999999999999999999854

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.22  E-value=0.23  Score=49.93  Aligned_cols=35  Identities=20%  Similarity=0.139  Sum_probs=32.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (416)
                      ..++|+|.|-+|+++|..|++.|++|.+.|.++..
T Consensus         6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~   40 (445)
T PRK04308          6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKP   40 (445)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence            47999999999999999999999999999987654

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=92.21  E-value=0.19  Score=49.02  Aligned_cols=45  Identities=24%  Similarity=0.423  Sum_probs=38.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCC-CeEEEEccC--------CCCCCcccccChh
Q 014883           23 FDLIVIGTGLPESVISAAASASG-KSVLHLDPN--------PFYGSHFSSLSIA   67 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G-~~V~vlE~~--------~~~GG~~~s~~~~   67 (416)
                      .+|+|||+|..|..+|..|++.| .+|++.+|.        ...+++..+..++
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD   55 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVD   55 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEec
Confidence            48999999999999999999999 999999998        5556666665543

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=92.18  E-value=0.24  Score=39.40  Aligned_cols=32  Identities=25%  Similarity=0.423  Sum_probs=28.8

Q ss_pred             EEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           25 LIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        25 ViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      |||||.|--|...+..|.+.+.+|+++|.+..
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~   32 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE   32 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence            79999999999999999998889999999854

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=92.17  E-value=0.22  Score=42.38  Aligned_cols=34  Identities=15%  Similarity=0.137  Sum_probs=30.6

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEc
Q 014883           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLD   52 (416)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE   52 (416)
                      +.+...|+|||||-.|+.-|..|.++|.+|+|+.
T Consensus        10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs   43 (157)
T PRK06719         10 NLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS   43 (157)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence            3455789999999999999999999999999994

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=92.15  E-value=0.17  Score=47.36  Aligned_cols=32  Identities=16%  Similarity=0.294  Sum_probs=29.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      .|.|||.|.-|.+.|..|+++|++|.+++++.
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~   33 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE   33 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58999999999999999999999999999864

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=92.13  E-value=0.31  Score=43.27  Aligned_cols=36  Identities=17%  Similarity=0.132  Sum_probs=32.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      .....++|+|.|-.|..+|..|.+.|.+|++.|.+.
T Consensus        26 l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~   61 (200)
T cd01075          26 LEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE   61 (200)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            344579999999999999999999999999999763

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=92.07  E-value=0.22  Score=44.31  Aligned_cols=34  Identities=12%  Similarity=0.254  Sum_probs=30.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEcc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDP   53 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~   53 (416)
                      .....|+|||||=.|...|..|.++|.+|+|++.
T Consensus         8 l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~   41 (202)
T PRK06718          8 LSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISP   41 (202)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence            3456899999999999999999999999999975

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=92.03  E-value=0.18  Score=49.58  Aligned_cols=33  Identities=21%  Similarity=0.214  Sum_probs=29.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (416)
                      .|.|||.|..|+..|..|+. |++|+++|.+...
T Consensus         2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~k   34 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPSR   34 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHH
Confidence            58999999999999988885 9999999986543

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=91.98  E-value=0.15  Score=49.95  Aligned_cols=43  Identities=14%  Similarity=0.172  Sum_probs=35.9

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhC-----CCeEEEEccCCCCCCc
Q 014883           18 IEPTAFDLIVIGTGLPESVISAAASAS-----GKSVLHLDPNPFYGSH   60 (416)
Q Consensus        18 ~~~~~~DViIIGaGl~GL~aA~~La~~-----G~~V~vlE~~~~~GG~   60 (416)
                      ++...+||||||||.+|+.+|+.|+..     .++++++|...+.==+
T Consensus        14 ~~~~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~~~~~r   61 (486)
T COG2509          14 LMNAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLDIEQR   61 (486)
T ss_pred             HhhhccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEeccchhhh
Confidence            556689999999999999999999963     7999999987654433

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.96  E-value=0.19  Score=50.93  Aligned_cols=34  Identities=12%  Similarity=-0.184  Sum_probs=31.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      ..|+|+|.|-+|.+||..|.+.|.+|++.|.++.
T Consensus         9 ~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~   42 (468)
T PRK04690          9 RRVALWGWGREGRAAYRALRAHLPAQALTLFCNA   42 (468)
T ss_pred             CEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCc
Confidence            3699999999999999999999999999997654

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=91.94  E-value=0.18  Score=44.76  Aligned_cols=35  Identities=29%  Similarity=0.347  Sum_probs=32.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      ...|.|||||+.|.-.|-..+.+|+.|.++|++..
T Consensus        11 ~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~   45 (298)
T KOG2304|consen   11 IKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED   45 (298)
T ss_pred             ccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence            35799999999999999999999999999999854

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=91.88  E-value=0.57  Score=45.81  Aligned_cols=53  Identities=23%  Similarity=0.379  Sum_probs=42.1

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (416)
                      ..+.+.+.+.++.....-+....|+.|..+  ++++++|.+.+|+.+.||.||+.
T Consensus        95 ~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e--~~~v~GV~~~~g~~~~a~~vVla  147 (392)
T PF01134_consen   95 DKYSRAMREKLESHPNLTIIQGEVTDLIVE--NGKVKGVVTKDGEEIEADAVVLA  147 (392)
T ss_dssp             HHHHHHHHHHHHTSTTEEEEES-EEEEEEC--TTEEEEEEETTSEEEEECEEEE-
T ss_pred             HHHHHHHHHHHhcCCCeEEEEcccceEEec--CCeEEEEEeCCCCEEecCEEEEe
Confidence            455667777777766655678999999997  89999999999999999999943

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=91.86  E-value=0.2  Score=50.51  Aligned_cols=34  Identities=24%  Similarity=0.155  Sum_probs=31.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEEccCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPF   56 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~-~V~vlE~~~~   56 (416)
                      -.|+|||+|..|+-+|..|++.|. +|++++++++
T Consensus       274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~  308 (457)
T PRK11749        274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGR  308 (457)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence            479999999999999999999998 8999998765

>PTZ00052 thioredoxin reductase; Provisional

Probab=91.84  E-value=0.21  Score=50.99  Aligned_cols=31  Identities=10%  Similarity=0.051  Sum_probs=29.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (416)
                      +++|||+|..|+-.|..|++.|.+|++++++
T Consensus       184 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~  214 (499)
T PTZ00052        184 KTLIVGASYIGLETAGFLNELGFDVTVAVRS  214 (499)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence            7999999999999999999999999999974

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=91.82  E-value=0.55  Score=46.98  Aligned_cols=49  Identities=20%  Similarity=0.314  Sum_probs=40.2

Q ss_pred             hHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE
Q 014883          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV  331 (416)
Q Consensus       280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI  331 (416)
                      .+-+.|.+.+++.|++|+.+++|++|..+  ++++++|+ .+|++++||.||
T Consensus       109 ~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~--~g~v~~v~-~~g~~i~A~~VI  157 (428)
T PRK10157        109 KFDAWLMEQAEEAGAQLITGIRVDNLVQR--DGKVVGVE-ADGDVIEAKTVI  157 (428)
T ss_pred             HHHHHHHHHHHHCCCEEECCCEEEEEEEe--CCEEEEEE-cCCcEEECCEEE
Confidence            45566777788899999999999999876  66666665 577889999999

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.80  E-value=0.24  Score=49.82  Aligned_cols=33  Identities=18%  Similarity=0.204  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ..|+|+|+|-+|+++|..|++.|++|.+.|++.
T Consensus         6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~   38 (447)
T PRK02472          6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP   38 (447)
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            468999999999999999999999999999765

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=91.79  E-value=0.22  Score=50.83  Aligned_cols=32  Identities=28%  Similarity=0.366  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      .|.|||+|.-|..-|..|+++|++|+++|+++
T Consensus         6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~   37 (495)
T PRK07531          6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPHP   37 (495)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            69999999999999999999999999999864

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=91.74  E-value=0.2  Score=51.02  Aligned_cols=31  Identities=13%  Similarity=0.132  Sum_probs=29.5

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (416)
                      .++|||+|..|+-+|..|++.|.+|+++++.
T Consensus       182 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~  212 (484)
T TIGR01438       182 KTLVVGASYVALECAGFLAGIGLDVTVMVRS  212 (484)
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence            6999999999999999999999999999974

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.70  E-value=0.25  Score=49.76  Aligned_cols=38  Identities=16%  Similarity=0.137  Sum_probs=34.2

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        18 ~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      +|.++--|+|||.|-+|.++|..|.+.|++|.+.|.++
T Consensus         2 ~~~~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   39 (448)
T PRK03803          2 LMQSDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE   39 (448)
T ss_pred             ccccCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence            56666679999999999999999999999999999875

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=91.70  E-value=0.23  Score=47.68  Aligned_cols=32  Identities=25%  Similarity=0.249  Sum_probs=29.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ++.|||+|--|.+.|..|+++|++|.++.++.
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~   33 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH   33 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence            58999999999999999999999999998853

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.64  E-value=0.22  Score=50.69  Aligned_cols=32  Identities=22%  Similarity=0.286  Sum_probs=29.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (416)
                      ..|+|+|.|.+|++++..|.+.|++|++.|.+
T Consensus        13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~   44 (488)
T PRK03369         13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDD   44 (488)
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            36999999999999999999999999999965

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=91.64  E-value=0.59  Score=48.67  Aligned_cols=52  Identities=25%  Similarity=0.267  Sum_probs=42.0

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCC-Cc--EEEc-CEEEE
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS-GQ--DILS-HKLVL  332 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~-G~--~i~A-d~VI~  332 (416)
                      ..|.++|.+.++..|++|+++++|++++.+  ++++++|...+ |+  .+.| +.||+
T Consensus       221 ~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~--~g~V~GV~~~~~g~~~~i~A~~~VVl  276 (578)
T PRK12843        221 NALIGRLLYSLRARGVRILTQTDVESLETD--HGRVIGATVVQGGVRRRIRARGGVVL  276 (578)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEee--CCEEEEEEEecCCeEEEEEccceEEE
Confidence            368889999899999999999999999876  78888887654 33  4676 67884

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=91.62  E-value=0.23  Score=50.48  Aligned_cols=37  Identities=14%  Similarity=0.122  Sum_probs=31.5

Q ss_pred             ccEEEECCChhHHHHHHHHh---hCCCeEEEEccCCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAAS---ASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La---~~G~~V~vlE~~~~~GG   59 (416)
                      -.++|||+|..|+-.|..++   +.|.+|+++|+++++..
T Consensus       188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~  227 (486)
T TIGR01423       188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILR  227 (486)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccc
Confidence            46999999999999996554   45999999999998764

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=91.55  E-value=0.2  Score=51.03  Aligned_cols=34  Identities=29%  Similarity=0.375  Sum_probs=31.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      ..|.|||+|..|...|..|+++|++|+++|++..
T Consensus         6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e   39 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE   39 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            3599999999999999999999999999998754

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.52  E-value=0.26  Score=49.91  Aligned_cols=40  Identities=28%  Similarity=0.330  Sum_probs=33.9

Q ss_pred             CCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           14 PYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        14 ~~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      +.+++.+.  .|.|+|.|-+|+++|..|.+.|++|.+.|++.
T Consensus         9 ~~~~~~~~--~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~   48 (473)
T PRK00141          9 ALPQELSG--RVLVAGAGVSGRGIAAMLSELGCDVVVADDNE   48 (473)
T ss_pred             hcccccCC--eEEEEccCHHHHHHHHHHHHCCCEEEEECCCh
Confidence            35555554  49999999999999999999999999999753

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=91.36  E-value=0.27  Score=49.07  Aligned_cols=37  Identities=16%  Similarity=0.161  Sum_probs=32.7

Q ss_pred             cEEEECCChhHHHHHHHHhh--------------CCCeEEEEccCCCCCCc
Q 014883           24 DLIVIGTGLPESVISAAASA--------------SGKSVLHLDPNPFYGSH   60 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~--------------~G~~V~vlE~~~~~GG~   60 (416)
                      .|+|||+|..|+-.|..|+.              .|.+|+++|+.+++...
T Consensus       175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~  225 (424)
T PTZ00318        175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGS  225 (424)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccccc
Confidence            79999999999999999985              58999999999887553

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=91.34  E-value=0.78  Score=45.65  Aligned_cols=34  Identities=35%  Similarity=0.529  Sum_probs=32.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      +|||+|||+|++|++||+.|+++|++|+|+|+..
T Consensus         2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~   35 (422)
T PRK05329          2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ   35 (422)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence            4899999999999999999999999999999874

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=91.29  E-value=0.68  Score=47.41  Aligned_cols=51  Identities=16%  Similarity=0.254  Sum_probs=41.9

Q ss_pred             hHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeC--CC--cEEEcCEEEE
Q 014883          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA--SG--QDILSHKLVL  332 (416)
Q Consensus       280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~--~G--~~i~Ad~VI~  332 (416)
                      .+.+.|.+.+++.|++|+++++|++|..+  +|++++|.+.  ++  .+++||.||+
T Consensus       191 ~l~~~L~~~~~~~gv~i~~~t~v~~l~~~--~g~V~Gv~~~~~~g~~~~i~a~~VVl  245 (506)
T PRK06481        191 YLVDGLLKNVQERKIPLFVNADVTKITEK--DGKVTGVKVKINGKETKTISSKAVVV  245 (506)
T ss_pred             HHHHHHHHHHHHcCCeEEeCCeeEEEEec--CCEEEEEEEEeCCCeEEEEecCeEEE
Confidence            68889998889999999999999999875  7887777653  33  3689999994

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=91.27  E-value=0.23  Score=49.33  Aligned_cols=36  Identities=19%  Similarity=0.172  Sum_probs=33.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (416)
                      ...|.|+|-|.+|++||..|.+.|.+|+|.|.+...
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~   42 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP   42 (448)
T ss_pred             CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence            357999999999999999999999999999987776

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=91.21  E-value=0.29  Score=44.08  Aligned_cols=32  Identities=16%  Similarity=0.264  Sum_probs=28.8

Q ss_pred             cEEEEC-CChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           24 DLIVIG-TGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        24 DViIIG-aGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      .|.||| +|.-|.+.|..|+++|++|.++.++.
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~   34 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL   34 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence            589997 79999999999999999999997654

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=91.17  E-value=0.16  Score=41.39  Aligned_cols=37  Identities=16%  Similarity=0.293  Sum_probs=30.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      ....+|.|||+|=.|-..|..|.++|+.|.-+..++.
T Consensus         8 ~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~   44 (127)
T PF10727_consen    8 AARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSP   44 (127)
T ss_dssp             ----EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH
T ss_pred             CCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCc
Confidence            4457999999999999999999999999998877653

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=91.16  E-value=0.37  Score=39.76  Aligned_cols=33  Identities=24%  Similarity=0.377  Sum_probs=30.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCe-EEEEccC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKS-VLHLDPN   54 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~-V~vlE~~   54 (416)
                      ...|+|||+|=+|-.++..|++.|.+ |.|+-|+
T Consensus        12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt   45 (135)
T PF01488_consen   12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRT   45 (135)
T ss_dssp             TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred             CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence            45899999999999999999999988 9999875

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=91.08  E-value=0.78  Score=45.14  Aligned_cols=38  Identities=18%  Similarity=0.237  Sum_probs=35.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (416)
                      ...+||+|||||++||++|+.|+++|++|+|+|+++.+
T Consensus         4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~   41 (392)
T PRK08773          4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPP   41 (392)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCc
Confidence            45689999999999999999999999999999998754

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=91.06  E-value=0.28  Score=50.14  Aligned_cols=34  Identities=29%  Similarity=0.367  Sum_probs=31.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      ..|.|||+|..|...|..|+++|++|+++|.+..
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e   41 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG   41 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            3589999999999999999999999999998765

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=90.95  E-value=0.26  Score=50.01  Aligned_cols=34  Identities=29%  Similarity=0.444  Sum_probs=31.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      .-.|+|+|+|..||.|+..+...|.+|.++|.++
T Consensus       165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~  198 (509)
T PRK09424        165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP  198 (509)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3589999999999999999999999999988875

>PRK06847 hypothetical protein; Provisional

Probab=90.93  E-value=0.82  Score=44.58  Aligned_cols=51  Identities=18%  Similarity=0.131  Sum_probs=42.0

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~  332 (416)
                      ..+.+.|.+.+...|.+|+++++|++|..+  ++. +.|++.+|+++.||.||.
T Consensus       107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~--~~~-~~v~~~~g~~~~ad~vI~  157 (375)
T PRK06847        107 PALARILADAARAAGADVRLGTTVTAIEQD--DDG-VTVTFSDGTTGRYDLVVG  157 (375)
T ss_pred             HHHHHHHHHHHHHhCCEEEeCCEEEEEEEc--CCE-EEEEEcCCCEEEcCEEEE
Confidence            467788888888889999999999999875  443 567778999999999993

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=90.85  E-value=0.69  Score=48.25  Aligned_cols=54  Identities=22%  Similarity=0.313  Sum_probs=42.0

Q ss_pred             cchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeC-CCc--EEEcCE-EEE
Q 014883          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQ--DILSHK-LVL  332 (416)
Q Consensus       278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~-~G~--~i~Ad~-VI~  332 (416)
                      ...+...|.+.++..|++|+++++|++|+++ ++|++++|... +|+  .++|++ ||+
T Consensus       212 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d-~~g~V~Gv~~~~~~~~~~i~a~~aVil  269 (584)
T PRK12835        212 GQSLVARLRLALKDAGVPLWLDSPMTELITD-PDGAVVGAVVEREGRTLRIGARRGVIL  269 (584)
T ss_pred             cHHHHHHHHHHHHhCCceEEeCCEEEEEEEC-CCCcEEEEEEEeCCcEEEEEeceeEEE
Confidence            4567777878888899999999999999986 37888888654 343  468874 773

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=90.84  E-value=0.24  Score=52.86  Aligned_cols=34  Identities=24%  Similarity=0.285  Sum_probs=31.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      ..|.|||||..|.-.|..++++|++|+++|.++.
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~  347 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK  347 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence            4699999999999999999999999999998854

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=90.84  E-value=0.38  Score=42.68  Aligned_cols=33  Identities=15%  Similarity=0.210  Sum_probs=29.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC-eEEEEccC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGK-SVLHLDPN   54 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~-~V~vlE~~   54 (416)
                      ...|.|||+|--|...|..|+++|. +++++|..
T Consensus        21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            4689999999999999999999998 58888875

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=90.82  E-value=0.82  Score=46.49  Aligned_cols=62  Identities=13%  Similarity=0.115  Sum_probs=44.0

Q ss_pred             cEEeecCC---cchHHHHHHHHHHh-cCcEEEcCCceeEEEEecCCCcEEEEE---eCCCc--EEEcCEEEEC
Q 014883          270 ALIYPIYG---QGELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVR---LASGQ--DILSHKLVLD  333 (416)
Q Consensus       270 ~~~~p~gG---~~~l~~al~r~~~~-~Gg~i~l~~~V~~I~~~~~~g~~~gV~---l~~G~--~i~Ad~VI~~  333 (416)
                      +.+.|.++   ...+.++|++.+.. .|++++++++|+.|..+. ++. |.|+   +.+|+  +++||+||+.
T Consensus       172 Al~~p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~-d~~-w~v~v~~t~~g~~~~i~Ad~VV~A  242 (497)
T PRK13339        172 ASKIDEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLS-DGG-WEVTVKDRNTGEKREQVADYVFIG  242 (497)
T ss_pred             EEECCCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECC-CCC-EEEEEEecCCCceEEEEcCEEEEC
Confidence            45566665   35888999988854 589999999999998752 333 4454   33443  6899999843

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=90.53  E-value=0.29  Score=52.67  Aligned_cols=34  Identities=18%  Similarity=0.099  Sum_probs=31.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCe-EEEEccCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKS-VLHLDPNPF   56 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~-V~vlE~~~~   56 (416)
                      -.|||||+|..|+-+|..|.+.|.+ |++++++++
T Consensus       571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~  605 (752)
T PRK12778        571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSE  605 (752)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence            4799999999999999999999997 999998865

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=90.50  E-value=0.67  Score=46.44  Aligned_cols=53  Identities=25%  Similarity=0.298  Sum_probs=42.6

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeC--CCc--EEEcCEEEE
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA--SGQ--DILSHKLVL  332 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~--~G~--~i~Ad~VI~  332 (416)
                      ..+.+.|.+.+++.|++|+++++|++|+.+ +++++++|++.  +++  .+.||.||+
T Consensus       130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~-~~g~v~Gv~~~~~~g~~~~~~a~~VVl  186 (439)
T TIGR01813       130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQD-DQGTVVGVVVKGKGKGIYIKAAKAVVL  186 (439)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEeeEeEEC-CCCcEEEEEEEeCCCeEEEEecceEEE
Confidence            468899999999999999999999999986 26777777653  343  368999993

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=90.49  E-value=0.32  Score=45.89  Aligned_cols=32  Identities=22%  Similarity=0.259  Sum_probs=29.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      .|.|||.|..|...|..|+++|++|.+++++.
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~   32 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP   32 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            37899999999999999999999999999874

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=90.41  E-value=0.96  Score=41.82  Aligned_cols=52  Identities=15%  Similarity=0.097  Sum_probs=41.6

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCC-----------CcEEEcCEEE
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS-----------GQDILSHKLV  331 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~-----------G~~i~Ad~VI  331 (416)
                      ..+.+.|.+.+...|++|++++.|..+..+ +++++.+|.+..           ..+++|+.||
T Consensus       104 ~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~-~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI  166 (257)
T PRK04176        104 VEAAAKLAAAAIDAGAKIFNGVSVEDVILR-EDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVV  166 (257)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCceeceeeEe-CCCcEEEEEEccccccccCCCCCcEEEEcCEEE
Confidence            577888988888999999999999999876 244777776431           2478999999

>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E

Probab=90.37  E-value=1  Score=46.77  Aligned_cols=58  Identities=16%  Similarity=0.275  Sum_probs=45.8

Q ss_pred             eecCCcc-hHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 014883          273 YPIYGQG-ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (416)
Q Consensus       273 ~p~gG~~-~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~Ad~VI~  332 (416)
                      ++..+++ .|.++|.+.+...|.+|+.+++|++++++  +|+++||..   .+|+  .|.|+.||+
T Consensus       112 ~~~~~~G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~--~g~v~Ga~~~~~~~g~~~~i~AkaVIL  175 (565)
T TIGR01816       112 AAADRTGHAILHTLYQQNLKADTSFFNEYFALDLLME--DGECRGVIAYCLETGEIHRFRAKAVVL  175 (565)
T ss_pred             ecCCCchHHHHHHHHHHHHhCCCEEEeccEEEEEEee--CCEEEEEEEEEcCCCcEEEEEeCeEEE
Confidence            3333343 68899988888899999999999999986  789999864   2464  578999994

coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=90.32  E-value=0.92  Score=44.71  Aligned_cols=52  Identities=25%  Similarity=0.196  Sum_probs=42.8

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE-EC
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LD  333 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI-~~  333 (416)
                      ..+.+.|.+.+...|++++.+++|++|..+  ++. +.|++++|+++.||.|| ++
T Consensus       111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~--~~~-v~v~~~~g~~~~ad~vI~Ad  163 (403)
T PRK07333        111 RVLINALRKRAEALGIDLREATSVTDFETR--DEG-VTVTLSDGSVLEARLLVAAD  163 (403)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEc--CCE-EEEEECCCCEEEeCEEEEcC
Confidence            467788888888889999999999999875  443 56777889999999999 44

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=90.27  E-value=0.33  Score=51.76  Aligned_cols=34  Identities=21%  Similarity=0.321  Sum_probs=31.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      ..|.|||||..|...|..++++|++|+++|.+..
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~  347 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQH  347 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            4699999999999999999999999999998753

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=90.25  E-value=0.4  Score=45.59  Aligned_cols=33  Identities=21%  Similarity=0.355  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCC--CeEEEEccCCC
Q 014883           24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNPF   56 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G--~~V~vlE~~~~   56 (416)
                      .|+|||+|..|.+.|..|+..|  .++.++|++..
T Consensus         2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~   36 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE   36 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence            5899999999999999999999  58999999754

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=90.19  E-value=0.37  Score=45.46  Aligned_cols=32  Identities=28%  Similarity=0.327  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (416)
                      ..|.|||||.-|---|..++.+|++|+++|.+
T Consensus         4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~   35 (307)
T COG1250           4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDIS   35 (307)
T ss_pred             cEEEEEcccchhHHHHHHHhhcCCceEEEeCC
Confidence            47899999999999999999999999999998

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=90.11  E-value=1  Score=44.07  Aligned_cols=34  Identities=26%  Similarity=0.388  Sum_probs=32.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCC-CeEEEEccCCCC
Q 014883           24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNPFY   57 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G-~~V~vlE~~~~~   57 (416)
                      ||+|||||++||++|..|+++| ++|+|+|+++.+
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~   35 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPS   35 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCcc
Confidence            8999999999999999999999 999999998654

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK06223 malate dehydrogenase; Reviewed

Probab=90.07  E-value=0.44  Score=45.29  Aligned_cols=34  Identities=15%  Similarity=0.124  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEEccCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPF   56 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~-~V~vlE~~~~   56 (416)
                      ..|.|||+|..|...|..|+..|+ +|.++|.+..
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~   37 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG   37 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence            489999999999999999999876 9999998654

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.07  E-value=0.36  Score=48.13  Aligned_cols=34  Identities=21%  Similarity=0.302  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      -.|.|||-|.+|.++|..|.+.|++|.+.|.+..
T Consensus         4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~   37 (418)
T PRK00683          4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLE   37 (418)
T ss_pred             CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            4699999999999999999999999999997643

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=89.98  E-value=0.89  Score=33.49  Aligned_cols=42  Identities=17%  Similarity=0.203  Sum_probs=34.0

Q ss_pred             cchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCC
Q 014883          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG  322 (416)
Q Consensus       278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G  322 (416)
                      -..+.+.+.+..+..|.++++++.|++|..+ +++ +. |+++||
T Consensus        39 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~-~~~-~~-V~~~~g   80 (80)
T PF00070_consen   39 DPDAAKILEEYLRKRGVEVHTNTKVKEIEKD-GDG-VE-VTLEDG   80 (80)
T ss_dssp             SHHHHHHHHHHHHHTTEEEEESEEEEEEEEE-TTS-EE-EEEETS
T ss_pred             CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEe-CCE-EE-EEEecC
Confidence            3467777778888999999999999999987 245 54 888876

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=89.86  E-value=0.39  Score=45.44  Aligned_cols=32  Identities=25%  Similarity=0.377  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      +|.|||.|.-|...|..|+++|++|.+++++.
T Consensus         3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~   34 (296)
T PRK15461          3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP   34 (296)
T ss_pred             eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            68999999999999999999999999999864

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=89.83  E-value=0.39  Score=45.56  Aligned_cols=31  Identities=19%  Similarity=0.249  Sum_probs=28.7

Q ss_pred             EEEECCChhHHHHHHHHhhCCC-eEEEEccCC
Q 014883           25 LIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (416)
Q Consensus        25 ViIIGaGl~GL~aA~~La~~G~-~V~vlE~~~   55 (416)
                      |.|||+|..|...|..|+..|+ +|.++|.+.
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e   32 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE   32 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence            5799999999999999999987 999999985

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.81  E-value=0.38  Score=49.14  Aligned_cols=33  Identities=15%  Similarity=0.183  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ..|.|+|.|.+|+++|..|.+.|++|.+.|.+.
T Consensus         8 ~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   40 (498)
T PRK02006          8 PMVLVLGLGESGLAMARWCARHGARLRVADTRE   40 (498)
T ss_pred             CEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence            369999999999999999999999999999865

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=89.76  E-value=1  Score=43.90  Aligned_cols=53  Identities=25%  Similarity=0.224  Sum_probs=42.9

Q ss_pred             chHHHHHHHHHHhcC-cEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE-ECC
Q 014883          279 GELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDP  334 (416)
Q Consensus       279 ~~l~~al~r~~~~~G-g~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI-~~p  334 (416)
                      ..+.+.|.+.+.+.| ++|+.+++|++|..+  ++. +.|++.+|++++||.|| ++.
T Consensus       106 ~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~--~~~-~~v~~~~g~~~~~~~vi~adG  160 (385)
T TIGR01988       106 RVLQQALWERLQEYPNVTLLCPARVVELPRH--SDH-VELTLDDGQQLRARLLVGADG  160 (385)
T ss_pred             HHHHHHHHHHHHhCCCcEEecCCeEEEEEec--CCe-eEEEECCCCEEEeeEEEEeCC
Confidence            467788888888888 999999999999876  444 46777899999999999 543

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.72  E-value=0.37  Score=48.54  Aligned_cols=31  Identities=16%  Similarity=0.102  Sum_probs=28.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (416)
                      ..|.|+|.|.+|.+||..|.+ |.+|+|.|.+
T Consensus         7 ~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~   37 (454)
T PRK01368          7 QKIGVFGLGKTGISVYEELQN-KYDVIVYDDL   37 (454)
T ss_pred             CEEEEEeecHHHHHHHHHHhC-CCEEEEECCC
Confidence            369999999999999999995 9999999965

>TIGR00275 flavoprotein, HI0933 family

Probab=89.71  E-value=1.6  Score=43.17  Aligned_cols=36  Identities=33%  Similarity=0.473  Sum_probs=34.1

Q ss_pred             EEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883           26 IVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (416)
Q Consensus        26 iIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (416)
                      ||||||.+||+||+.|+++|++|+|+|+++.+|+.+
T Consensus         1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~   36 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKL   36 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccc
Confidence            699999999999999999999999999999998754

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=89.64  E-value=0.82  Score=34.35  Aligned_cols=32  Identities=25%  Similarity=0.338  Sum_probs=29.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhC-CCeEEEEcc
Q 014883           22 AFDLIVIGTGLPESVISAAASAS-GKSVLHLDP   53 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~-G~~V~vlE~   53 (416)
                      ...++|+|+|-.|..+|..|.+. +.+|.++++
T Consensus        23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            35799999999999999999998 789999988

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK10015 oxidoreductase; Provisional

Probab=89.61  E-value=1.2  Score=44.52  Aligned_cols=50  Identities=18%  Similarity=0.298  Sum_probs=39.4

Q ss_pred             hHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 014883          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (416)
Q Consensus       280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~  332 (416)
                      .+-+.|.+.+++.|++++.++.|+.|..+  ++++.+|+ .++++++||.||.
T Consensus       109 ~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~--~~~v~~v~-~~~~~i~A~~VI~  158 (429)
T PRK10015        109 RLDPWLMEQAEQAGAQFIPGVRVDALVRE--GNKVTGVQ-AGDDILEANVVIL  158 (429)
T ss_pred             HHHHHHHHHHHHcCCEEECCcEEEEEEEe--CCEEEEEE-eCCeEEECCEEEE
Confidence            44455777788899999999999999876  66666676 4566899999994

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=89.59  E-value=0.45  Score=46.99  Aligned_cols=35  Identities=17%  Similarity=0.203  Sum_probs=31.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      .-.|+|+|+|.-|+.+|..|...|.+|+|+|.++.
T Consensus       202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~  236 (413)
T cd00401         202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI  236 (413)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence            34799999999999999999999999999998753

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=89.58  E-value=0.81  Score=45.14  Aligned_cols=41  Identities=17%  Similarity=0.363  Sum_probs=35.4

Q ss_pred             CCCCCCCcccEEEECC-ChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           15 YPPIEPTAFDLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        15 ~~~~~~~~~DViIIGa-Gl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      +.+.+.....|+|+|| |.-|..++..|.++|++|.++.++.
T Consensus        53 ~~~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~   94 (390)
T PLN02657         53 FRSKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREK   94 (390)
T ss_pred             ccccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEech
Confidence            5556666778999997 9999999999999999999998764

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=89.57  E-value=0.55  Score=43.06  Aligned_cols=35  Identities=17%  Similarity=0.180  Sum_probs=32.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      ...++|+|+|.-+...|..++..|++|+|+|.++.
T Consensus       100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~  134 (246)
T TIGR02964       100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA  134 (246)
T ss_pred             CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence            35899999999999999999999999999997755

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=89.45  E-value=0.63  Score=44.02  Aligned_cols=34  Identities=18%  Similarity=0.230  Sum_probs=31.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ...|.|||.|-.|+.+|..|.+.|.+|.+++++.
T Consensus       152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~  185 (296)
T PRK08306        152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS  185 (296)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4589999999999999999999999999999984

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=89.44  E-value=0.41  Score=48.38  Aligned_cols=34  Identities=15%  Similarity=0.034  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHH-HHHHHhhCCCeEEEEccCCC
Q 014883           23 FDLIVIGTGLPESV-ISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        23 ~DViIIGaGl~GL~-aA~~La~~G~~V~vlE~~~~   56 (416)
                      ..|.|||.|-+|++ +|..|.+.|++|.+.|.+..
T Consensus         8 ~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~   42 (461)
T PRK00421          8 KRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES   42 (461)
T ss_pred             CEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence            36999999999999 59999999999999998765

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=89.42  E-value=0.56  Score=43.50  Aligned_cols=35  Identities=20%  Similarity=0.267  Sum_probs=31.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCC-CeEEEEccCCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPF   56 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G-~~V~vlE~~~~   56 (416)
                      ...|+|||.|-.|..+|-.|+++| .+++++|....
T Consensus        30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V   65 (268)
T PRK15116         30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV   65 (268)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence            468999999999999999999999 89999997644

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=89.38  E-value=1.1  Score=46.71  Aligned_cols=52  Identities=27%  Similarity=0.402  Sum_probs=42.1

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCC--Cc-EEEcC-EEEE
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS--GQ-DILSH-KLVL  332 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~--G~-~i~Ad-~VI~  332 (416)
                      .+|.++|.+.+++.|++|+++++|++|.++  ++++++|++.+  ++ .+.|+ .||+
T Consensus       214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~--~g~V~GV~~~~~~~~~~i~a~k~VVl  269 (574)
T PRK12842        214 NALAARLAKSALDLGIPILTGTPARELLTE--GGRVVGARVIDAGGERRITARRGVVL  269 (574)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEee--CCEEEEEEEEcCCceEEEEeCCEEEE
Confidence            678899988889999999999999999987  78888887643  33 47786 5773

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=89.36  E-value=1.1  Score=43.98  Aligned_cols=33  Identities=21%  Similarity=0.389  Sum_probs=32.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (416)
                      .+||+|||||++||++|..|+++|++|+|+|++
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~   34 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA   34 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence            479999999999999999999999999999998

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=89.33  E-value=1.1  Score=46.39  Aligned_cols=53  Identities=21%  Similarity=0.299  Sum_probs=42.4

Q ss_pred             cchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeC-CCc--EEEcC-EEEE
Q 014883          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQ--DILSH-KLVL  332 (416)
Q Consensus       278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~-~G~--~i~Ad-~VI~  332 (416)
                      ...|.+.|.+.+++.|++|+++++|++|+.+  +|++++|... +|+  .+.|+ .||+
T Consensus       207 G~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~--~g~v~Gv~~~~~g~~~~i~A~~aVIl  263 (557)
T PRK12844        207 GAALIGRMLEAALAAGVPLWTNTPLTELIVE--DGRVVGVVVVRDGREVLIRARRGVLL  263 (557)
T ss_pred             cHHHHHHHHHHHHhCCCEEEeCCEEEEEEEe--CCEEEEEEEEECCeEEEEEecceEEE
Confidence            3467888888889999999999999999987  7888898763 454  47885 5773

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=89.32  E-value=1.5  Score=46.22  Aligned_cols=54  Identities=28%  Similarity=0.444  Sum_probs=42.4

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~Ad~VI~  332 (416)
                      ..+..+|++.++..|++|+.+++|++|..++.++++++|++   .+++  +++||.||.
T Consensus       232 ~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVn  290 (627)
T PLN02464        232 SRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVN  290 (627)
T ss_pred             HHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEE
Confidence            47888999999999999999999999987511366777765   2444  579999994

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=89.21  E-value=0.39  Score=51.39  Aligned_cols=34  Identities=26%  Similarity=0.360  Sum_probs=31.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      ..|.|||+|..|.-.|..++.+|++|+++|.++.
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~  369 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPA  369 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHH
Confidence            4699999999999999999999999999998754

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK06834 hypothetical protein; Provisional

Probab=89.15  E-value=1.3  Score=45.17  Aligned_cols=52  Identities=17%  Similarity=0.224  Sum_probs=41.6

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE-EC
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LD  333 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI-~~  333 (416)
                      ..+-+.|.+.++..|.+|+.+++|++|+++  ++. +.|++.+|++++||.|| ++
T Consensus       100 ~~le~~L~~~l~~~gv~i~~~~~v~~v~~~--~~~-v~v~~~~g~~i~a~~vVgAD  152 (488)
T PRK06834        100 NHIERILAEWVGELGVPIYRGREVTGFAQD--DTG-VDVELSDGRTLRAQYLVGCD  152 (488)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEc--CCe-EEEEECCCCEEEeCEEEEec
Confidence            356677777778889999999999999986  333 46777788899999999 54

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=89.12  E-value=1.5  Score=42.90  Aligned_cols=40  Identities=20%  Similarity=0.309  Sum_probs=36.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      +.++||||||||+.||++|+.|+++|.+|+|+|++.-.+|
T Consensus         2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~g   41 (387)
T COG0665           2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGG   41 (387)
T ss_pred             CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCCc
Confidence            4578999999999999999999999999999999876663

>TIGR00292 thiazole biosynthesis enzyme

Probab=89.08  E-value=1.6  Score=40.22  Aligned_cols=54  Identities=19%  Similarity=0.137  Sum_probs=42.4

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCC--cEEEEEeCC-----------CcEEEcCEEE-ECC
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSG--SYKGVRLAS-----------GQDILSHKLV-LDP  334 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g--~~~gV~l~~-----------G~~i~Ad~VI-~~p  334 (416)
                      .++.+.|.+.+.+.|++++.++.|+.+..+  ++  ++.+|.+..           ..+++|+.|| ++.
T Consensus       100 ~el~~~L~~~a~e~GV~I~~~t~V~dli~~--~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG  167 (254)
T TIGR00292       100 AEFISTLASKALQAGAKIFNGTSVEDLITR--DDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATG  167 (254)
T ss_pred             HHHHHHHHHHHHHcCCEEECCcEEEEEEEe--CCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeec
Confidence            477888888888899999999999999886  44  677887632           2478999999 444

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=89.06  E-value=0.69  Score=44.29  Aligned_cols=35  Identities=17%  Similarity=0.127  Sum_probs=31.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEEccCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFY   57 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~-~V~vlE~~~~~   57 (416)
                      ..|+|||+|..|...|..|+..|+ +|.++|.+...
T Consensus         7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~   42 (321)
T PTZ00082          7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNI   42 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCch
Confidence            589999999999999999999996 99999987764

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=89.01  E-value=0.52  Score=41.64  Aligned_cols=31  Identities=23%  Similarity=0.301  Sum_probs=28.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (416)
                      -+.|+|+|--|.+.|.+|+++|++|.+-=++
T Consensus         3 ~~~i~GtGniG~alA~~~a~ag~eV~igs~r   33 (211)
T COG2085           3 IIAIIGTGNIGSALALRLAKAGHEVIIGSSR   33 (211)
T ss_pred             EEEEeccChHHHHHHHHHHhCCCeEEEecCC
Confidence            5899999999999999999999999986443

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=88.98  E-value=1.3  Score=43.69  Aligned_cols=35  Identities=37%  Similarity=0.621  Sum_probs=33.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      .+||+|||||++||++|+.|+++|++|+|+|+++.
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~   36 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPL   36 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCc
Confidence            47999999999999999999999999999999874

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=88.90  E-value=0.78  Score=38.49  Aligned_cols=34  Identities=12%  Similarity=0.299  Sum_probs=30.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCC-CeEEEEccCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASG-KSVLHLDPNP   55 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G-~~V~vlE~~~   55 (416)
                      ...++|||+|..|...|..|++.| ++|.+++++.
T Consensus        19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~   53 (155)
T cd01065          19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL   53 (155)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence            357999999999999999999996 8999998764

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK07045 putative monooxygenase; Reviewed

Probab=88.87  E-value=1.4  Score=43.24  Aligned_cols=54  Identities=17%  Similarity=0.277  Sum_probs=42.4

Q ss_pred             hHHHHHHHHHH-hcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE-ECC
Q 014883          280 ELPQAFCRRAA-VKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDP  334 (416)
Q Consensus       280 ~l~~al~r~~~-~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI-~~p  334 (416)
                      .|-+.|.+.++ ..|.++++++.|+.|..+ +++.++.|++++|+++.||.|| ++.
T Consensus       107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~-~~~~~~~v~~~~g~~~~~~~vIgADG  162 (388)
T PRK07045        107 QLRRLLLAKLDGLPNVRLRFETSIERIERD-ADGTVTSVTLSDGERVAPTVLVGADG  162 (388)
T ss_pred             HHHHHHHHHHhcCCCeeEEeCCEEEEEEEC-CCCcEEEEEeCCCCEEECCEEEECCC
Confidence            56666766664 467999999999999986 3565567888899999999999 553

>PRK06175 L-aspartate oxidase; Provisional

Probab=88.87  E-value=1.4  Score=44.16  Aligned_cols=58  Identities=10%  Similarity=0.168  Sum_probs=42.7

Q ss_pred             eecCCc-chHHHHHHHHHHh-cCcEEEcCCceeEEEEecCCCcEEEEE-eCCCc--EEEcCEEEE
Q 014883          273 YPIYGQ-GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVR-LASGQ--DILSHKLVL  332 (416)
Q Consensus       273 ~p~gG~-~~l~~al~r~~~~-~Gg~i~l~~~V~~I~~~~~~g~~~gV~-l~~G~--~i~Ad~VI~  332 (416)
                      ++.... ..+.+.|.+.++. .|++|+++++|+.|..+  ++++++|. ..+++  .+.|+.||+
T Consensus       121 ~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~--~~~v~Gv~~~~~g~~~~i~Ak~VIL  183 (433)
T PRK06175        121 HFKDNTGKKVEKILLKKVKKRKNITIIENCYLVDIIEN--DNTCIGAICLKDNKQINIYSKVTIL  183 (433)
T ss_pred             ecCCCChHHHHHHHHHHHHhcCCCEEEECcEeeeeEec--CCEEEEEEEEECCcEEEEEcCeEEE
Confidence            344433 3688888877764 59999999999999876  67777865 33554  589999994

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=88.78  E-value=0.56  Score=44.29  Aligned_cols=32  Identities=28%  Similarity=0.382  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      +|.|||.|..|...|..|++.|++|.+++++.
T Consensus         4 ~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~   35 (296)
T PRK11559          4 KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNP   35 (296)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            69999999999999999999999999999864

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=88.77  E-value=0.47  Score=47.87  Aligned_cols=34  Identities=12%  Similarity=0.092  Sum_probs=31.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      .+|.|||.|.-|...|..|+++|++|.+++++..
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~   35 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYE   35 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            4799999999999999999999999999998654

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=88.71  E-value=0.81  Score=40.23  Aligned_cols=33  Identities=15%  Similarity=0.223  Sum_probs=29.6

Q ss_pred             cccEEEECC-ChhHHHHHHHHhhCCCeEEEEccC
Q 014883           22 AFDLIVIGT-GLPESVISAAASASGKSVLHLDPN   54 (416)
Q Consensus        22 ~~DViIIGa-Gl~GL~aA~~La~~G~~V~vlE~~   54 (416)
                      ...++|+|+ |-.|..+|..|++.|++|.++.++
T Consensus        28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~   61 (194)
T cd01078          28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD   61 (194)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            457999996 999999999999999999999765

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=88.63  E-value=0.5  Score=51.33  Aligned_cols=37  Identities=19%  Similarity=-0.019  Sum_probs=32.6

Q ss_pred             CCcccEEEECCChhHHHH-HHHHhhCCCeEEEEccCCC
Q 014883           20 PTAFDLIVIGTGLPESVI-SAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~a-A~~La~~G~~V~vlE~~~~   56 (416)
                      ++...+.|||.|-+|++| |..|++.|++|.+.|.+..
T Consensus         2 ~~~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~   39 (809)
T PRK14573          2 MKSLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEG   39 (809)
T ss_pred             CCcceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCC
Confidence            344569999999999999 9999999999999998754

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=88.52  E-value=0.47  Score=50.48  Aligned_cols=34  Identities=26%  Similarity=0.313  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHh-hCCCeEEEEccCCC
Q 014883           23 FDLIVIGTGLPESVISAAAS-ASGKSVLHLDPNPF   56 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La-~~G~~V~vlE~~~~   56 (416)
                      ..|.|||||..|...|..++ ++|++|+++|.++.
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~  339 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQ  339 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence            46999999999999999998 59999999998853

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=88.48  E-value=1.5  Score=40.79  Aligned_cols=51  Identities=12%  Similarity=0.129  Sum_probs=38.5

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeC-CCcEEEcCEEEE
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQDILSHKLVL  332 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~-~G~~i~Ad~VI~  332 (416)
                      ..+-+.|.+.+++.|+++++++.|+++..+  ++.+ .|.+. ++++++||.||.
T Consensus        91 ~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~--~~~~-~~~~~~~~~~~~a~~vv~  142 (295)
T TIGR02032        91 DAFDEQLAERAQEAGAELRLGTTVLDVEIH--DDRV-VVIVRGGEGTVTAKIVIG  142 (295)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCcEEeeEEEe--CCEE-EEEEcCccEEEEeCEEEE
Confidence            356677778888899999999999999886  4442 34433 456899999993

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=88.41  E-value=0.55  Score=51.67  Aligned_cols=34  Identities=21%  Similarity=0.160  Sum_probs=31.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      .+|||||+|..|+-+|..+.+.|.+|+++.++++
T Consensus       448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~  481 (944)
T PRK12779        448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTK  481 (944)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCc
Confidence            4799999999999999999999999999998864

>PRK12839 hypothetical protein; Provisional

Probab=88.39  E-value=1.5  Score=45.71  Aligned_cols=53  Identities=28%  Similarity=0.365  Sum_probs=41.0

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeC--CCc-EEE-cCEEEE
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA--SGQ-DIL-SHKLVL  332 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~--~G~-~i~-Ad~VI~  332 (416)
                      ..|...|.+.+++.|++|+++++|++|+++ ++|++++|...  +|+ .+. ++.||+
T Consensus       214 ~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~-~~g~V~GV~~~~~~g~~~i~aak~VVL  270 (572)
T PRK12839        214 TALTGRLLRSADDLGVDLRVSTSATSLTTD-KNGRVTGVRVQGPDGAVTVEATRGVVL  270 (572)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEEC-CCCcEEEEEEEeCCCcEEEEeCCEEEE
Confidence            467888888889999999999999999875 36888898643  444 344 477884

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=88.33  E-value=1.5  Score=45.42  Aligned_cols=52  Identities=25%  Similarity=0.363  Sum_probs=41.1

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeC-CCc--EEEcC-EEEE
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQ--DILSH-KLVL  332 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~-~G~--~i~Ad-~VI~  332 (416)
                      ..+...|.+.++..|++|+++++|++|+.+  ++++++|... +|+  .++|+ .||+
T Consensus       208 ~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~--~g~v~Gv~~~~~g~~~~i~A~~~VIl  263 (557)
T PRK07843        208 QALAAGLRIGLQRAGVPVLLNTPLTDLYVE--DGRVTGVHAAESGEPQLIRARRGVIL  263 (557)
T ss_pred             HHHHHHHHHHHHcCCCEEEeCCEEEEEEEe--CCEEEEEEEEeCCcEEEEEeceeEEE
Confidence            457788888888899999999999999986  7888888654 454  47886 4774

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=88.32  E-value=0.69  Score=43.49  Aligned_cols=33  Identities=18%  Similarity=0.313  Sum_probs=30.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~-~V~vlE~~~   55 (416)
                      ..|+|||+|-+|-++|..|++.|. +|.|++++.
T Consensus       128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~  161 (284)
T PRK12549        128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP  161 (284)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            579999999999999999999996 799998863

>PRK07190 hypothetical protein; Provisional

Probab=88.28  E-value=1.5  Score=44.73  Aligned_cols=52  Identities=13%  Similarity=0.150  Sum_probs=40.0

Q ss_pred             hHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE-ECC
Q 014883          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDP  334 (416)
Q Consensus       280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI-~~p  334 (416)
                      .+-+.|.+.+++.|++|+++++|+.|.++  ++. +.|++.+|++++|+.|| ++.
T Consensus       110 ~le~~L~~~~~~~Gv~v~~~~~v~~l~~~--~~~-v~v~~~~g~~v~a~~vVgADG  162 (487)
T PRK07190        110 YVEKLLDDKLKEAGAAVKRNTSVVNIELN--QAG-CLTTLSNGERIQSRYVIGADG  162 (487)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEc--CCe-eEEEECCCcEEEeCEEEECCC
Confidence            45556666777889999999999999987  333 34556788899999999 443

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=88.21  E-value=1.2  Score=44.00  Aligned_cols=53  Identities=23%  Similarity=0.286  Sum_probs=46.9

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~  332 (416)
                      ..|.+.+....+..|.++++++.+.++.-+ .+|++..|.+.+|+++.||.||+
T Consensus       255 ~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~-~~Gev~~V~l~dg~~l~adlvv~  307 (478)
T KOG1336|consen  255 PSIGQFYEDYYENKGVKFYLGTVVSSLEGN-SDGEVSEVKLKDGKTLEADLVVV  307 (478)
T ss_pred             HHHHHHHHHHHHhcCeEEEEecceeecccC-CCCcEEEEEeccCCEeccCeEEE
Confidence            467777888889999999999999999887 37899999999999999999993

>PRK07831 short chain dehydrogenase; Provisional

Probab=88.15  E-value=0.98  Score=41.55  Aligned_cols=34  Identities=21%  Similarity=0.134  Sum_probs=28.4

Q ss_pred             cccEEEECC-C-hhHHHHHHHHhhCCCeEEEEccCC
Q 014883           22 AFDLIVIGT-G-LPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        22 ~~DViIIGa-G-l~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ...++|.|| | --|...|..|+++|++|++++++.
T Consensus        17 ~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~   52 (262)
T PRK07831         17 GKVVLVTAAAGTGIGSATARRALEEGARVVISDIHE   52 (262)
T ss_pred             CCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCH
Confidence            457999997 5 478999999999999999987653

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=88.06  E-value=0.6  Score=47.36  Aligned_cols=33  Identities=30%  Similarity=0.460  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ..|+|+|+|..|+.|+..+...|.+|.++|.+.
T Consensus       165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~  197 (511)
T TIGR00561       165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP  197 (511)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            589999999999999999999999999999876

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	416
1d5t_A	433	Guanine Nucleotide Dissociation Inhibitor, Alpha-Is		7e-30
1gnd_A	447	Guanine Nucleotide Dissociation Inhibitor, Alpha-Is		7e-30
1lv0_A	449	Crystal Structure Of The Rab Effector Guanine Nucle		8e-30
1ukv_G	453	Structure Of Rabgdp-Dissociation Inhibitor In Compl		6e-29
3cph_G	451	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		6e-29
1ltx_R	650	Structure Of Rab Escort Protein-1 In Complex With R		2e-27
1vg0_A	650	The Crystal Structures Of The Rep-1 Protein In Comp		2e-27
3p1w_A	475	Crystal Structure Of Rab Gdi From Plasmodium Falcip		9e-23

>pdb|1D5T|A Chain A, Guanine Nucleotide Dissociation Inhibitor, Alpha-Isoform Length = 433

Iteration: 1
 Score =  128 bits (321), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 100/370 (27%), Positives = 175/370 (47%), Gaps = 56/370 (15%)
Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+IV+GTGL E ++S   S +GK VLH+D NP+YG   SS+             TP   
Sbjct: 7   YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSI-------------TPL-- 51
Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
             + LY   ++       + +  R++N+D+  P+ L      V ++L +  + YL+FK +
Sbjct: 52  --EELYKRFQLLEGPPETMGRG-RDWNVDLI-PKFLMANGQLVKMLLYTEVTRYLDFKVV 107
Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
           + +F+     K+  VP +         +G+ EK +  +F   V         +EN+ +  
Sbjct: 108 EGSFVYKG-GKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANF------DENDPKTF 160
Query: 203 E--EDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
           E  +  ++   +   K  L   +     +A+A+   D  + +  L+T   INR+ LY+ S
Sbjct: 161 EGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLET---INRIKLYSES 217
Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
           + R+  +    +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ +  +G   GV+ +
Sbjct: 218 LARYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVK-S 272
Query: 321 SGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK--P 378
            G+     +L+ DPS+ VP  +  +                 G+V R ICI    +K   
Sbjct: 273 EGEVARCKQLICDPSY-VPDRVRKA-----------------GQVIRIICILSHPIKNTN 314
Query: 379 DLSNFLVIFP 388
           D ++  +I P
Sbjct: 315 DANSCQIIIP 324

>pdb|1GND|A Chain A, Guanine Nucleotide Dissociation Inhibitor, Alpha-Isoform Length = 447

Iteration: 1
 Score =  128 bits (321), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 100/370 (27%), Positives = 175/370 (47%), Gaps = 56/370 (15%)
Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+IV+GTGL E ++S   S +GK VLH+D NP+YG   SS+             TP   
Sbjct: 5   YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSI-------------TPL-- 49
Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
             + LY   ++       + +  R++N+D+  P+ L      V ++L +  + YL+FK +
Sbjct: 50  --EELYKRFQLLEGPPETMGRG-RDWNVDLI-PKFLMANGQLVKMLLYTEVTRYLDFKVV 105
Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
           + +F+     K+  VP +         +G+ EK +  +F   V         +EN+ +  
Sbjct: 106 EGSFVYKG-GKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANF------DENDPKTF 158
Query: 203 E--EDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
           E  +  ++   +   K  L   +     +A+A+   D  + +  L+T   INR+ LY+ S
Sbjct: 159 EGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLET---INRIKLYSES 215
Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
           + R+  +    +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ +  +G   GV+ +
Sbjct: 216 LARYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVK-S 270
Query: 321 SGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK--P 378
            G+     +L+ DPS+ VP  +  +                 G+V R ICI    +K   
Sbjct: 271 EGEVARCKQLICDPSY-VPDRVRKA-----------------GQVIRIICILSHPIKNTN 312
Query: 379 DLSNFLVIFP 388
           D ++  +I P
Sbjct: 313 DANSCQIIIP 322

>pdb|1LV0|A Chain A, Crystal Structure Of The Rab Effector Guanine Nucleotide Dissociation Inhibitor (Gdi) In Complex With A Geranylgeranyl (Gg) Peptide Length = 449

Iteration: 1
 Score =  127 bits (320), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 100/370 (27%), Positives = 175/370 (47%), Gaps = 56/370 (15%)
Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+IV+GTGL E ++S   S +GK VLH+D NP+YG   SS+             TP   
Sbjct: 7   YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSI-------------TPL-- 51
Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
             + LY   ++       + +  R++N+D+  P+ L      V ++L +  + YL+FK +
Sbjct: 52  --EELYKRFQLLEGPPETMGRG-RDWNVDLI-PKFLMANGQLVKMLLYTEVTRYLDFKVV 107
Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
           + +F+     K+  VP +         +G+ EK +  +F   V         +EN+ +  
Sbjct: 108 EGSFVYKG-GKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANF------DENDPKTF 160
Query: 203 E--EDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
           E  +  ++   +   K  L   +     +A+A+   D  + +  L+T   INR+ LY+ S
Sbjct: 161 EGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLET---INRIKLYSES 217
Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
           + R+  +    +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ +  +G   GV+ +
Sbjct: 218 LARYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVK-S 272
Query: 321 SGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK--P 378
            G+     +L+ DPS+ VP  +  +                 G+V R ICI    +K   
Sbjct: 273 EGEVARCKQLICDPSY-VPDRVRKA-----------------GQVIRIICILSHPIKNTN 314
Query: 379 DLSNFLVIFP 388
           D ++  +I P
Sbjct: 315 DANSCQIIIP 324

>pdb|1UKV|G Chain G, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 453

Iteration: 1
 Score =  125 bits (313), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 90/375 (24%), Positives = 171/375 (45%), Gaps = 48/375 (12%)
Query: 21  TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPS 80
           T +D+IV+GTG+ E ++S   S  GK VLH+D    YG   +S++++ L           
Sbjct: 10  TDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQ----- 64
Query: 81  SVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFK 140
               +P+  +   S +         R++N+D+  P+ L       ++++ +  + Y++FK
Sbjct: 65  ----NPISKEERESKFGK------DRDWNVDLI-PKFLMANGELTNILIHTDVTRYVDFK 113
Query: 141 SIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVR 200
            +  +++     K+  VP +         +G+ EK ++ +F + +  +   D S    + 
Sbjct: 114 QVSGSYVF-KQGKIYKVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLD 172
Query: 201 ISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
           + +  +D    E   K  L +  K  + +A+A+   D  + +     R    R+ LY  S
Sbjct: 173 LDKNTMD----EVYYKFGLGNSTKEFIGHAMALWTNDDYLQQ---PARPSFERILLYCQS 225
Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
           + R+  +    +YP+YG GELPQ F R +A+ G  Y+L  P+  +L  +++G ++GV+  
Sbjct: 226 VARYGKS--PYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTK 283
Query: 321 SGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL 380
            G    +  ++ DP++  P    S+ Q                +V R ICI    + P+ 
Sbjct: 284 LGT-FKAPLVIADPTY-FPEKCKSTGQ----------------RVIRAICILNHPV-PNT 324
Query: 381 SN---FLVIFPPRSL 392
           SN     +I P   L
Sbjct: 325 SNADSLQIIIPQSQL 339

>pdb|3CPH|G Chain G, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 451

Iteration: 1
 Score =  125 bits (313), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 90/375 (24%), Positives = 171/375 (45%), Gaps = 48/375 (12%)
Query: 21  TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPS 80
           T +D+IV+GTG+ E ++S   S  GK VLH+D    YG   +S++++ L           
Sbjct: 8   TDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQ----- 62
Query: 81  SVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFK 140
               +P+  +   S +         R++N+D+  P+ L       ++++ +  + Y++FK
Sbjct: 63  ----NPISKEERESKFGKD------RDWNVDLI-PKFLMANGELTNILIHTDVTRYVDFK 111
Query: 141 SIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVR 200
            +  +++     K+  VP +         +G+ EK ++ +F + +  +   D S    + 
Sbjct: 112 QVSGSYVF-KQGKIYKVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLD 170
Query: 201 ISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
           + +  +D    E   K  L +  K  + +A+A+   D  + +     R    R+ LY  S
Sbjct: 171 LDKNTMD----EVYYKFGLGNSTKEFIGHAMALWTNDDYLQQ---PARPSFERILLYCQS 223
Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
           + R+  +    +YP+YG GELPQ F R +A+ G  Y+L  P+  +L  +++G ++GV+  
Sbjct: 224 VARYGKS--PYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTK 281
Query: 321 SGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL 380
            G    +  ++ DP++  P    S+ Q                +V R ICI    + P+ 
Sbjct: 282 LGT-FKAPLVIADPTY-FPEKCKSTGQ----------------RVIRAICILNHPV-PNT 322
Query: 381 SN---FLVIFPPRSL 392
           SN     +I P   L
Sbjct: 323 SNADSLQIIIPQSQL 337

>pdb|1LTX|R Chain R, Structure Of Rab Escort Protein-1 In Complex With Rab Geranylgeranyl Transferase And Isoprenoid Length = 650

Iteration: 1
 Score =  120 bits (301), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 145/311 (46%), Gaps = 34/311 (10%)
Query: 106 RNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIF 165
           R FN+D+   ++L+     +DL++KS  S Y EFK+I        +  +  VP SRA +F
Sbjct: 222 RRFNIDLVS-KLLYSRGLLIDLLIKSNVSRYAEFKNITRILAF-REGTVEQVPCSRADVF 279
Query: 166 KDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS 225
             K L ++EK  LM+F      +    E   +  R  E    + F+E+L   KL   ++ 
Sbjct: 280 NSKQLTMVEKRMLMKFLTFCVEY----EEHPDEYRAYE---GTTFSEYLKTQKLTPNLQY 332
Query: 226 IVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAF 285
            VL++IAM       SE    T DG+     +   +GR+ N     ++P+YGQGELPQ F
Sbjct: 333 FVLHSIAM------TSETTSCTVDGLKATKKFLQCLGRYGNT--PFLFPLYGQGELPQCF 384
Query: 286 CRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASS 345
           CR  AV G +Y LR  V  L+ D+ S   K V    GQ I+S   +++ S+    + +  
Sbjct: 385 CRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSENTCSRV 444
Query: 346 HQQLQESFQAFSLSDNKGKVARGICITRSS-LKPDLSNFLVIFPPRSLFPEQVTSIRVLQ 404
             +               +++R + IT  S LK D    + I    +  P    ++RV++
Sbjct: 445 QYR---------------QISRAVLITDGSVLKTDADQQVSILTVPAEEPGSF-AVRVIE 488
Query: 405 LGGNLAVCPLG 415
           L  +   C  G
Sbjct: 489 LCSSTMTCMKG 499

>pdb|1VG0|A Chain A, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 650

Iteration: 1
 Score =  120 bits (300), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/231 (33%), Positives = 117/231 (50%), Gaps = 17/231 (7%)
Query: 106 RNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIF 165
           R FN+D+   ++L+     +DL++KS  S Y EFK+I        +  +  VP SRA +F
Sbjct: 222 RRFNIDLVS-KLLYSRGLLIDLLIKSNVSRYAEFKNITRILAF-REGTVEQVPCSRADVF 279
Query: 166 KDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS 225
             K L ++EK  LM+F      +    E   +  R  E    + F+E+L   KL   ++ 
Sbjct: 280 NSKQLTMVEKRMLMKFLTFCVEY----EEHPDEYRAYE---GTTFSEYLKTQKLTPNLQY 332
Query: 226 IVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAF 285
            VL++IAM       SE    T DG+     +   +GR+ N     ++P+YGQGELPQ F
Sbjct: 333 FVLHSIAM------TSETTSCTVDGLKATKKFLQCLGRYGNT--PFLFPLYGQGELPQCF 384
Query: 286 CRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSF 336
           CR  AV G +Y LR  V  L+ D+ S   K V    GQ I+S   +++ S+
Sbjct: 385 CRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSY 435

>pdb|3P1W|A Chain A, Crystal Structure Of Rab Gdi From Plasmodium Falciparum, Pfl2060c Length = 475

Iteration: 1
 Score =  104 bits (260), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 163/361 (45%), Gaps = 61/361 (16%)
Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+I++GTGL E ++S   S  GK +L LD NP+YG   +SL   +LT+  N+   P   
Sbjct: 21  YDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASL---NLTNLYNTFK-PKEN 76
Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
            P         S Y         R++N+D+  P+ +    + V ++ K+  ++YLE+  +
Sbjct: 77  IP---------SKYGEN------RHWNVDLI-PKFILVGGNLVKILKKTRVTNYLEWLVV 120
Query: 143 DATFM--------LDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDES 194
           + +++        L ++  +  VP +         L LMEKN+   F++ V         
Sbjct: 121 EGSYVYQHQKKGFLTSEKFIHKVPATDMEALVSPLLSLMEKNRCKNFYQYVS-------E 173
Query: 195 EENNVRISEEDLDSPFA----EFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDG 250
            + N R + ++LD P+     E      L       + +A+A+   D  + +    T   
Sbjct: 174 WDANKRNTWDNLD-PYKLTMLEIYKHFNLCQLTIDFLGHAVALYLNDDYLKQPAYLT--- 229
Query: 251 INRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQN 310
           + R+ LY  SI  F  +    IYP+YG G +P+ F R  A+ G  ++L   V+  + D +
Sbjct: 230 LERIKLYMQSISAFGKS--PFIYPLYGLGGIPEGFSRMCAINGGTFMLNKNVVDFVFDDD 287
Query: 311 SGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGIC 370
           +    G++ + G+     K++ DPS+ +          L+   +        G+V R IC
Sbjct: 288 N-KVCGIKSSDGEIAYCDKVICDPSYVM---------HLKNKIKKI------GQVIRCIC 331
Query: 371 I 371
           I
Sbjct: 332 I 332

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	416
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	3e-77
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	3e-72
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	2e-65
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	4e-65
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	1e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* Length = 453

 Score =  245 bits (627), Expect = 3e-77
 Identities = 88/399 (22%), Positives = 167/399 (41%), Gaps = 48/399 (12%)

Query: 20  PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTP 79
            T +D+IV+GTG+ E ++S   S  GK VLH+D    YG   +S++++ L      +   
Sbjct: 9   DTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPIS 68

Query: 80  SSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEF 139
                                     R++N+D+  P+ L       ++++ +  + Y++F
Sbjct: 69  KEERESKFG---------------KDRDWNVDL-IPKFLMANGELTNILIHTDVTRYVDF 112

Query: 140 KSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNV 199
           K +  +++     K+  VP +         +G+ EK ++ +F + +  +   D S    +
Sbjct: 113 KQVSGSYVFK-QGKIYKVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGL 171

Query: 200 RISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNS 259
            + +        E   K  L +  K  + +A+A+   D  + +     R    R+ LY  
Sbjct: 172 DLDKN----TMDEVYYKFGLGNSTKEFIGHAMALWTNDDYLQQ---PARPSFERILLYCQ 224

Query: 260 SIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL 319
           S+ R+       +YP+YG GELPQ F R +A+ G  Y+L  P+  +L  +++G ++GV+ 
Sbjct: 225 SVARYGK--SPYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVK- 281

Query: 320 ASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP- 378
                  +  ++ DP++  P    S+ Q                +V R ICI    +   
Sbjct: 282 TKLGTFKAPLVIADPTY-FPEKCKSTGQ----------------RVIRAICILNHPVPNT 324

Query: 379 -DLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGM 416
            +  +  +I P   L  +    I V  +     VC  G 
Sbjct: 325 SNADSLQIIIPQSQLGRKS--DIYVAIVSDAHNVCSKGH 361

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} Length = 475

 Score =  233 bits (594), Expect = 3e-72
 Identities = 86/412 (20%), Positives = 165/412 (40%), Gaps = 57/412 (13%)

Query: 14  PYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFL 73
                +   +D+I++GTGL E ++S   S  GK +L LD NP+YG   +SL++ +L +  
Sbjct: 12  ENLYFQGEHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASLNLTNLYNTF 71

Query: 74  NSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGA 133
                  S                        R++N+D+  P+ +    + V ++ K+  
Sbjct: 72  KPKENIPSKYG-------------------ENRHWNVDL-IPKFILVGGNLVKILKKTRV 111

Query: 134 SHYLEFKSIDATFM--------LDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLV 185
           ++YLE+  ++ +++        L ++  +  VP +         L LMEKN+   F++ V
Sbjct: 112 TNYLEWLVVEGSYVYQHQKKGFLTSEKFIHKVPATDMEALVSPLLSLMEKNRCKNFYQYV 171

Query: 186 QGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVL 245
               +   +  +N+    +       E      L       + +A+A+   D  + +   
Sbjct: 172 SEWDANKRNTWDNL----DPYKLTMLEIYKHFNLCQLTIDFLGHAVALYLNDDYLKQ--- 224

Query: 246 KTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISL 305
                + R+ LY  SI  F       IYP+YG G +P+ F R  A+ G  ++L   V+  
Sbjct: 225 PAYLTLERIKLYMQSISAFGK--SPFIYPLYGLGGIPEGFSRMCAINGGTFMLNKNVVDF 282

Query: 306 LTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKV 365
           + D +     G++ + G+     K++ DPS+ +                  +     G+V
Sbjct: 283 VFDDD-NKVCGIKSSDGEIAYCDKVICDPSYVMHLK---------------NKIKKIGQV 326

Query: 366 ARGICITRSSLKP--DLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLG 415
            R ICI  + +      ++  +I P   L  +    I +  +     V   G
Sbjct: 327 IRCICILSNPIPETNQTNSCQIIIPQNQLNRKS--DIYINLVSFQHGVTLKG 376

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A Length = 433

 Score =  214 bits (546), Expect = 2e-65
 Identities = 96/398 (24%), Positives = 168/398 (42%), Gaps = 54/398 (13%)

Query: 20  PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTP 79
              +D+IV+GTGL E ++S   S +GK VLH+D NP+YG   SS++  +  +        
Sbjct: 4   DEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEG 63

Query: 80  SSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEF 139
                                     R++N+D+  P+ L      V ++L +  + YL+F
Sbjct: 64  PPETM------------------GRGRDWNVDL-IPKFLMANGQLVKMLLYTEVTRYLDF 104

Query: 140 KSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNV 199
           K ++ +F+     K+  VP +         +G+ EK +  +F   V      D       
Sbjct: 105 KVVEGSFVY-KGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTF--- 160

Query: 200 RISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNS 259
               +  ++   +   K  L   +     +A+A+   D  + +      + INR+ LY+ 
Sbjct: 161 -EGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQ---PCLETINRIKLYSE 216

Query: 260 SIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL 319
           S+ R+       +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ +  +G   GV+ 
Sbjct: 217 SLARYGK--SPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVK- 271

Query: 320 ASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK-- 377
           + G+     +L+ DPS+ VP  +  +                 G+V R ICI    +K  
Sbjct: 272 SEGEVARCKQLICDPSY-VPDRVRKA-----------------GQVIRIICILSHPIKNT 313

Query: 378 PDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLG 415
            D ++  +I P   +  +    I V  +     V   G
Sbjct: 314 NDANSCQIIIPQNQVNRKS--DIYVCMISYAHNVAAQG 349

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* Length = 650

 Score =  219 bits (557), Expect = 4e-65
 Identities = 90/389 (23%), Positives = 151/389 (38%), Gaps = 46/389 (11%)

Query: 31  GLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSD 90
            +P          S   V   +      +  +  S  + +  +      +        + 
Sbjct: 155 EIPAEQSQCPGPESSPEVNDAEATGKKENSDAKSSTEEPSENVPKVQDNTETPKKNRITY 214

Query: 91  VEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDA 150
            +I            R FN+D+   ++L+     +DL++KS  S Y EFK+I        
Sbjct: 215 SQIIK--------EGRRFNIDLV-SKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFR- 264

Query: 151 DAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPF 210
           +  +  VP SRA +F  K L ++EK  LM+F      +    +              + F
Sbjct: 265 EGTVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCVEYEEHPDEYR-------AYEGTTF 317

Query: 211 AEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGA 270
           +E+L   KL   ++  VL++IAM             T DG+     +   +GR+ N    
Sbjct: 318 SEYLKTQKLTPNLQYFVLHSIAMTSETTS------CTVDGLKATKKFLQCLGRYGNT--P 369

Query: 271 LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKL 330
            ++P+YGQGELPQ FCR  AV G +Y LR  V  L+ D+ S   K V    GQ I+S   
Sbjct: 370 FLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHF 429

Query: 331 VLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP---DLSNFLVIF 387
           +++ S+    + +                    +++R + IT  S+     D    ++  
Sbjct: 430 IIEDSYLSENTCSRV---------------QYRQISRAVLITDGSVLRTDADQQVSILTV 474

Query: 388 PPRSLFPEQVTSIRVLQLGGNLAVCPLGM 416
           P        V   RV++L  +   C  G 
Sbjct: 475 PAEEPGSFAV---RVIELCSSTMTCMKGT 500

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* Length = 650

 Score = 77.7 bits (190), Expect = 1e-15
 Identities = 50/222 (22%), Positives = 87/222 (39%), Gaps = 30/222 (13%)

Query: 20  PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTP 79
           P+ FD+IVIGTGLPES+I+AA S SG+ VLH+D   +YG +++S S + L  +L  +   
Sbjct: 6   PSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQEN 65

Query: 80  SSVCPD---------------PLYS------DVEISNYASRLLSQHPRNFNLDVSGPRVL 118
           + V  +               PL S       VE+  YAS+ L +              +
Sbjct: 66  NDVVTENSMWQEQILENEEAIPLSSKDKTIQHVEVFCYASQDLHKDVEEAGALQKNHASV 125

Query: 119 FCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL 178
             A  A        +      + +      +  A+    P   ++   + +    +K   
Sbjct: 126 TSAQSAEAAEAAETSCLPTAVEPLSMG-SCEIPAEQSQCPGPESSPEVNDAEATGKKEN- 183

Query: 179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLP 220
                      S  E    NV   +++ ++P    +T  ++ 
Sbjct: 184 -------SDAKSSTEEPSENVPKVQDNTETPKKNRITYSQII 218

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.6 bits (138), Expect = 5e-09
 Identities = 69/426 (16%), Positives = 127/426 (29%), Gaps = 119/426 (27%)

Query: 44  SGKSVLHLD-----------PNPFY----GSHFSSLSI----ADLTHFL--NSHSTPSSV 82
           SGK+ + LD               +     +  S  ++      L + +  N  S     
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220

Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNL----DVSGPRVL--FCADHAVDLMLKSGASHY 136
               L     I     RLL   P    L    +V   +    F  + +  ++L +     
Sbjct: 221 SNIKLRIH-SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF--NLSCKILLTT----- 272

Query: 137 LEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKL----VQGH---L 189
             FK +   F+  A     S+      +  D+   L+ K    R   L    +  +   L
Sbjct: 273 -RFKQV-TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330

Query: 190 SLDESEENNVRISEEDLDSP----FAEFLTKMKLPHKIKSIV----------LY-AIAMA 234
           S+         I+E   D        + +   KL   I+S +          ++  +++ 
Sbjct: 331 SI---------IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381

Query: 235 DYDQEVSEYVLK----------TRDGINRLALYNSSIGRFQNALGALIYPIY-------- 276
                +   +L               +N+L  Y S + +        I  IY        
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY-SLVEKQPKESTISIPSIYLELKVKLE 440

Query: 277 GQGELPQAF--CRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA----SGQDILSHKL 330
            +  L ++               L  P +    DQ   S+ G  L       +  L   +
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYL----DQYFYSHIGHHLKNIEHPERMTLFRMV 496

Query: 331 VLDPSF------------TVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP 378
            LD  F               GS+ ++ QQL + ++ + + DN  K  R +         
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSILNTLQQL-KFYKPY-ICDNDPKYERLVN-------- 546

Query: 379 DLSNFL 384
            + +FL
Sbjct: 547 AILDFL 552

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.6 bits (133), Expect = 2e-08
 Identities = 53/381 (13%), Positives = 106/381 (27%), Gaps = 104/381 (27%)

Query: 51  LDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEI-SNY-ASR--------- 99
           L  N  Y    S +        + +         D LY+D ++ + Y  SR         
Sbjct: 87  LRIN--YKFLMSPIKTEQRQPSMMTRMYIE--QRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142

Query: 100 -LLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVP 158
            LL   P   N+ + G             +L SG       K+  A  +  +    C + 
Sbjct: 143 ALLELRP-AKNVLIDG-------------VLGSG-------KTWVALDVCLSYKVQCKMD 181

Query: 159 DSRAAIF------KDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAE 212
                IF       +    ++E  Q +  +++     S  +   N +++    + +    
Sbjct: 182 F---KIFWLNLKNCNSPETVLEMLQKL-LYQIDPNWTSRSDHSSN-IKLRIHSIQAELRR 236

Query: 213 FLTKMKLPHKIKSIVLYAIAMAD--YDQEVSEY-------VLKTRDGINRLALYNSSIGR 263
            L      + +  +VL          + +           +L TR            +  
Sbjct: 237 LLKSKPYENCL--LVL------LNVQNAKAWNAFNLSCKILLTTRF---------KQV-- 277

Query: 264 FQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ 323
             + L A                        L  L      L                 +
Sbjct: 278 -TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL---------------PRE 321

Query: 324 DILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL--S 381
            + ++   L         +A S +    ++  +   +   K+   I  + + L+P     
Sbjct: 322 VLTTNPRRL-------SIIAESIRDGLATWDNWKHVNCD-KLTTIIESSLNVLEPAEYRK 373

Query: 382 NF--LVIFPPRSLFPEQVTSI 400
            F  L +FPP +  P  + S+
Sbjct: 374 MFDRLSVFPPSAHIPTILLSL 394

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	416
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	100.0
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	100.0
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	100.0
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	100.0
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	100.0
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	99.95
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	99.94
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	99.94
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	99.93
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	99.93
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	99.93
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	99.92
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	99.92
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	99.92
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	99.92
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	99.91
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	99.9
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.87
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	99.87
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	99.87
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	99.86
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	99.84
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	99.84
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	99.76
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	99.76
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	99.73
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	99.72
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	99.72
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	99.72
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	99.7
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	99.67
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	99.67
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.64
3dme_A	369	Conserved exported protein; structural genomics, P	99.37
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.36
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.33
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.27
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	99.26
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.2
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	99.19
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.18
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.18
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	99.17
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.17
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.16
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	99.11
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	99.11
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	99.1
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	99.07
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	99.02
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	98.95
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	98.94
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.81
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.75
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.74
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.71
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.67
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	98.64
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.63
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	98.62
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	98.61
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	98.6
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.6
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	98.6
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	98.59
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.59
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.59
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.58
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.58
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.57
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.57
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	98.57
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	98.56
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	98.53
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	98.53
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	98.52
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.52
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	98.52
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.52
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	98.52
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.51
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	98.51
4dna_A	463	Probable glutathione reductase; structural genomic	98.49
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	98.49
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.49
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.49
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.48
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	98.48
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.48
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	98.47
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	98.47
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.47
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	98.46
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.46
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	98.46
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.45
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.43
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.43
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.43
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.43
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.42
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.42
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.42
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.41
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	98.4
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.39
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.39
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.39
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.39
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	98.38
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.38
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.38
3atr_A	453	Conserved archaeal protein; saturating double bond	98.38
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.37
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.37
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	98.37
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	98.37
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	98.36
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.36
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.36
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.36
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	98.36
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.36
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	98.36
2bry_A	497	NEDD9 interacting protein with calponin homology a	98.36
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.36
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.36
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	98.35
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.35
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.34
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	98.34
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.34
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.34
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.34
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	98.34
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.33
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	98.32
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	98.32
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	98.31
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.29
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.29
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	98.29
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.29
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	98.29
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	98.29
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.29
4hb9_A	412	Similarities with probable monooxygenase; flavin,	98.28
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.27
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.26
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.26
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.25
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.24
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.24
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.24
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.23
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	98.22
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	98.22
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.22
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	98.21
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.21
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	98.21
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.2
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	98.2
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	98.19
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.19
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	98.17
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	98.16
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	98.15
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.15
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	98.14
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	98.13
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	98.12
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	98.11
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	98.11
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.09
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.08
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	98.06
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	98.06
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.04
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.04
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	98.03
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.03
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	98.03
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	98.02
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	98.01
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	97.97
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.97
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	97.97
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	97.92
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	97.92
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	97.91
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.89
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.89
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.88
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	97.87
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	97.87
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	97.85
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	97.85
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.82
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	97.8
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	97.8
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	97.78
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.77
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	97.75
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	97.7
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	97.68
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	97.67
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	97.52
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	97.47
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	97.45
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	97.38
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	97.32
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.26
2e1m_B	130	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	96.71
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	96.39
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	96.36
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.25
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.22
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	96.14
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.0
1id1_A	153	Putative potassium channel protein; RCK domain, E.	95.98
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	95.96
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	95.92
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	95.92
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	95.9
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	95.85
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	95.84
3c85_A	183	Putative glutathione-regulated potassium-efflux S	95.83
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	95.8
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	95.78
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	95.65
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	95.58
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	95.58
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	95.57
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	95.54
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	95.48
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	95.37
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	95.29
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	95.22
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	95.2
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	95.18
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	95.15
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	95.14
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	95.13
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	95.1
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	95.09
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	95.08
1ojt_A	482	Surface protein; redox-active center, glycolysis,	95.07
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	95.04
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	95.01
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	94.99
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	94.94
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	94.87
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	94.87
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	94.86
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	94.86
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	94.85
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	94.81
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	94.79
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	94.73
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	94.72
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	94.69
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	94.67
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	94.65
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	94.59
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	94.59
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	94.57
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	94.53
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	94.53
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	94.48
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	94.45
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	94.42
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	94.4
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	94.37
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	94.36
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	94.35
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	94.34
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	94.32
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	94.31
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	94.29
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	94.28
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	94.27
2cul_A	232	Glucose-inhibited division protein A-related PROT	94.25
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	94.23
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	94.23
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	94.22
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	94.2
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	94.18
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	94.16
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	94.16
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	94.08
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	94.07
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	94.07
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	94.06
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	94.04
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	94.02
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	94.02
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	94.02
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	94.0
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	93.99
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	93.97
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	93.95
3qha_A	296	Putative oxidoreductase; seattle structural genomi	93.92
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	93.9
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	93.9
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	93.85
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	93.81
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	93.8
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	93.79
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	93.78
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	93.76
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	93.74
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	93.66
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	93.64
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	93.63
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	93.58
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	93.53
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	93.51
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	93.43
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	93.42
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	93.4
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	93.38
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	93.37
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	93.31
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	93.29
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	93.27
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	93.25
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	93.24
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	93.22
4g65_A	461	TRK system potassium uptake protein TRKA; structur	93.2
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	93.14
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	93.14
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	93.12
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	93.12
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	93.12
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	93.08
3atr_A	453	Conserved archaeal protein; saturating double bond	93.03
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	93.02
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	93.01
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	93.0
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	92.93
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	92.9
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	92.87
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	92.86
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	92.85
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	92.85
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	92.84
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	92.82
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	92.8
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	92.76
1fec_A	490	Trypanothione reductase; redox-active center, oxid	92.74
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	92.71
3tl2_A	315	Malate dehydrogenase; center for structural genomi	92.71
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	92.7
3r9u_A	315	Thioredoxin reductase; structural genomics, center	92.7
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	92.68
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	92.67
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	92.65
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	92.6
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	92.57
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	92.56
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	92.55
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	92.51
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	92.48
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	92.46
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	92.34
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	92.32
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	92.29
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	92.29
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	92.24
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	92.23
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	92.23
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	92.22
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	92.2
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	92.16
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	92.16
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	92.07
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	92.07
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	92.06
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	92.06
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	92.04
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	92.01
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	92.0
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	91.96
4dna_A	463	Probable glutathione reductase; structural genomic	91.93
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	91.93
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	91.89
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	91.76
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	91.73
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	91.73
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	91.73
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	91.72
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	91.68
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	91.66
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	91.57
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	91.53
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	91.5
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	91.45
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	91.41
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	91.39
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	91.37
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	91.35
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	91.32
4ezb_A	317	Uncharacterized conserved protein; structural geno	91.29
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	91.22
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	91.18
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	91.12
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	91.07
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	91.06
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	91.05
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	91.0
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	90.93
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	90.87
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	90.84
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	90.84
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	90.78
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	90.74
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	90.73
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	90.67
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	90.66
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	90.66
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	90.64
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	90.64
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	90.62
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	90.54
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	90.53
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	90.5
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	90.49
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	90.48
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	90.45
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	90.44
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	90.43
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	90.42
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	90.42
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	90.36
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	90.32
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	90.3
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	90.25
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	90.23
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	90.2
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	90.12
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	90.12
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	90.06
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	90.03
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	90.02
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	89.95
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	89.9
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	89.89
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	89.88
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	89.84
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	89.84
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	89.83
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	89.75
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	89.71
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	89.7
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	89.7
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	89.66
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	89.63
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	89.6
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	89.53
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	89.48
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	89.47
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	89.45
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	89.44
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	89.32
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	89.25
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	89.23
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	89.18
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	89.15
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	89.1
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	89.03
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	88.98
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	88.89
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	88.79
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	88.7
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	88.6
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	88.6
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	88.56
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	88.52
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	88.41
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	88.31
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	88.22
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	88.18
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	88.18
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	88.16
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	88.06
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	87.94
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	87.73
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	87.69
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	87.67
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	87.63
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	87.61
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	87.6
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	87.54
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	87.54
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	87.52
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	87.51
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	87.45
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	87.39
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	87.35

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=2.5e-50  Score=399.77  Aligned_cols=351  Identities=24%  Similarity=0.442  Sum_probs=283.1

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCcccccccccccc
Q 014883           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (416)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (416)
                      ++..|||||||||++||++|+.|+++|++|+|+|+++++||++.+++..++..+... +.+.                 .
T Consensus        17 ~~~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~Gg~~~s~~~~~l~~~~~~-g~~~-----------------~   78 (475)
T 3p1w_A           17 QGEHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASLNLTNLYNTFKP-KENI-----------------P   78 (475)
T ss_dssp             CCCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHCT-TSCC-----------------C
T ss_pred             ccccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCCCCccccchhhhhhhccc-CCCc-----------------c
Confidence            456799999999999999999999999999999999999999999998765444432 1110                 0


Q ss_pred             ccccCCCCceEeeCCCCeEEeeCchHHHHHHhcCcccccccccccceeeec--------cCCceeecCCChhhhhhcCCC
Q 014883           99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLD--------ADAKLCSVPDSRAAIFKDKSL  170 (416)
Q Consensus        99 ~~~~~~~~~~~~dl~Gp~~~~~~~~~~~~l~~~g~~~~~~f~~~~~~~~~~--------~~g~~~~~p~~~~~~~~~~~l  170 (416)
                      ..+ +..++|++|+. |+++++.+.++++|.++++.+|++|+.+++.|++.        ++|+.+++|.++.++|+++.+
T Consensus        79 ~~~-g~~R~y~iDL~-P~~l~~~g~L~~lL~~~gv~~ylef~~~~~~y~~~~~~~~~~~~~g~~~~VPss~~e~~~~~lL  156 (475)
T 3p1w_A           79 SKY-GENRHWNVDLI-PKFILVGGNLVKILKKTRVTNYLEWLVVEGSYVYQHQKKGFLTSEKFIHKVPATDMEALVSPLL  156 (475)
T ss_dssp             GGG-CCGGGCCEESS-CCBEETTSHHHHHHHHTTCGGGSCEEECSEEEEEEEECCCSSSCCEEEEECCCSHHHHHTCTTS
T ss_pred             ccc-ccccceEEeec-CeEeecCcHHHHHHHHCCchheeEEEecCcceEEecCccccccCCCceEeCCCCHHHHhhccCC
Confidence            112 35689999995 99999999999999999999999999999988763        256799999999999999999


Q ss_pred             ChHHHHHHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHHhccCCchhhhhhhchhhH
Q 014883          171 GLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDG  250 (416)
Q Consensus       171 ~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  250 (416)
                      ++.+|+++++|+..++++....+...   + ..+....|+.+|++++++++.+++++.+++++.... +.  ...++..+
T Consensus       157 s~~eK~~l~kFL~~l~~~~~~~~~~~---~-~~~l~~~s~~e~l~~~gls~~l~~fl~~alaL~~~~-~~--~~~~a~~~  229 (475)
T 3p1w_A          157 SLMEKNRCKNFYQYVSEWDANKRNTW---D-NLDPYKLTMLEIYKHFNLCQLTIDFLGHAVALYLND-DY--LKQPAYLT  229 (475)
T ss_dssp             CHHHHHHHHHHHHHHHHCCTTCGGGS---T-TCCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSSS-GG--GGSBHHHH
T ss_pred             CHHHHHHHHHHHHHHHhhhhccchhh---h-cccccCCCHHHHHHHcCCCHHHHHHHHHHHHhhcCC-Cc--ccCCHHHH
Confidence            99999999999998876643222100   0 112346899999999999999999887776654321 11  13467778


Q ss_pred             HHHHHHHHhhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEE
Q 014883          251 INRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKL  330 (416)
Q Consensus       251 ~~~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~V  330 (416)
                      +.++..|+.|+++||.  +++.||+||+++|+++|++.+++.|++|+++++|++|..+ ++|++++|++.+|++++||+|
T Consensus       230 l~ri~~y~~Sl~~yg~--s~~~yp~gG~~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d-~~g~v~gV~~~~G~~i~Ad~V  306 (475)
T 3p1w_A          230 LERIKLYMQSISAFGK--SPFIYPLYGLGGIPEGFSRMCAINGGTFMLNKNVVDFVFD-DDNKVCGIKSSDGEIAYCDKV  306 (475)
T ss_dssp             HHHHHHHHHHHHHHSS--CSEEEETTCTTHHHHHHHHHHHHC--CEESSCCEEEEEEC-TTSCEEEEEETTSCEEEEEEE
T ss_pred             HHHHHHHHHHHhhcCC--CceEEECCCHHHHHHHHHHHHHHcCCEEEeCCeEEEEEEe-cCCeEEEEEECCCcEEECCEE
Confidence            8888999988888874  3589999999999999999999999999999999999984 278889999989999999999


Q ss_pred             EECCCCCCCCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCCCCC--CCCceEEEeCCCCCCCCCCCeEEEEEecCC
Q 014883          331 VLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP--DLSNFLVIFPPRSLFPEQVTSIRVLQLGGN  408 (416)
Q Consensus       331 I~~p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~~~--~~~~~~~~~pp~~~~~~~~~~v~~~~~~~~  408 (416)
                      |+++.+.. .        +|..   .   ...+.++|+++|.++|+.+  ++++++++|||.+.+.  .++|||.+++++
T Consensus       307 I~a~~~~~-~--------~p~~---~---~~~~~v~R~i~I~~~pi~~~~~~~~~~i~~P~~~~~~--~~~iy~~~~s~~  369 (475)
T 3p1w_A          307 ICDPSYVM-H--------LKNK---I---KKIGQVIRCICILSNPIPETNQTNSCQIIIPQNQLNR--KSDIYINLVSFQ  369 (475)
T ss_dssp             EECGGGCT-T--------STTS---E---EEEEEEEEEEEEESSCCTTSTTCSSEEEEECGGGGTS--SSCEEEEEEEGG
T ss_pred             EECCCccc-c--------Cccc---c---cccceEEEEEEEEeccCcccCCCceEEEEeCCcccCC--CCCEEEEEECCC
Confidence            99887641 1        1110   0   1257899999999999965  5678899999987654  578999999999


Q ss_pred             CccCCCCC
Q 014883          409 LAVCPLGM  416 (416)
Q Consensus       409 ~~~~p~G~  416 (416)
                      +++||+|+
T Consensus       370 ~~~cp~G~  377 (475)
T 3p1w_A          370 HGVTLKGK  377 (475)
T ss_dssp             GTSSCTTC
T ss_pred             cCcCCCCc
Confidence            99999996

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=100.00  E-value=2.6e-47  Score=387.97  Aligned_cols=362  Identities=32%  Similarity=0.547  Sum_probs=283.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCC-------C----------
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSS-------V----------   82 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~-------~----------   82 (416)
                      +.+|||+|||+|+.|.+.|+.|++.|++|+|+|+|++|||.+.++++.++..|+........       +          
T Consensus         6 ~~~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~gg~~~~~~l~~l~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (650)
T 1vg0_A            6 PSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQENNDVVTENSMWQEQILENEEA   85 (650)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHHHTC----------CGGGGCCTTEEE
T ss_pred             CCcCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCcccCccccccHHHHHHHHHHhhccccccccccchhhhhhcchhh
Confidence            44799999999999999999999999999999999999999999999999899876542100       0          


Q ss_pred             ----CCCCcccccccccc--------------------------------------------------------------
Q 014883           83 ----CPDPLYSDVEISNY--------------------------------------------------------------   96 (416)
Q Consensus        83 ----~~~~~~~~~~~~~~--------------------------------------------------------------   96 (416)
                          .....+++.++.++                                                              
T Consensus        86 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (650)
T 1vg0_A           86 IPLSSKDKTIQHVEVFCYASQDLHKDVEEAGALQKNHASVTSAQSAEAAEAAETSCLPTAVEPLSMGSCEIPAEQSQCPG  165 (650)
T ss_dssp             EEBCSSCCCEEEEEEEECSCC-----------------------------------------------------------
T ss_pred             ccccccccccccceeEeecccccccchhhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                00000000000000                                                              


Q ss_pred             ----------------------------------------c---ccc----ccCCCCceEeeCCCCeEEeeCchHHHHHH
Q 014883           97 ----------------------------------------A---SRL----LSQHPRNFNLDVSGPRVLFCADHAVDLML  129 (416)
Q Consensus        97 ----------------------------------------~---~~~----~~~~~~~~~~dl~Gp~~~~~~~~~~~~l~  129 (416)
                                                              .   ..+    +.+..|+|+||++ |+++++++.++++|.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~R~f~~DL~-PklL~~~g~lv~LL~  244 (650)
T 1vg0_A          166 PESSPEVNDAEATGKKENSDAKSSTEEPSENVPKVQDNTETPKKNRITYSQIIKEGRRFNIDLV-SKLLYSRGLLIDLLI  244 (650)
T ss_dssp             ---------------------------------------------CCCHHHHHHTGGGCCEESS-CCCEESSSHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccchhhhcccCCCeEEeeC-CeeeeCCcHHHHHHH
Confidence                                                    0   000    1125689999995 999999999999999


Q ss_pred             hcCcccccccccccceeeeccCCceeecCCChhhhhhcCCCChHHHHHHHHHHHHHHhhcCCCccccccccccccccCCc
Q 014883          130 KSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSP  209 (416)
Q Consensus       130 ~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t  209 (416)
                      ++|+.+|++|+.++..|++. +|+++++|+++.++|+++.+++.+|+++|+|+..+..+.. .+      ..+..+...|
T Consensus       245 ~sgV~~yLEFk~v~~~y~~~-~G~~~~VPas~~eif~s~~Lsl~EKr~L~kFl~~~~~~~~-~p------~~~~~~d~~S  316 (650)
T 1vg0_A          245 KSNVSRYAEFKNITRILAFR-EGTVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCVEYEE-HP------DEYRAYEGTT  316 (650)
T ss_dssp             HHTGGGGCCEEECCEEEEES-SSSEEECCCSHHHHHHCSSSCHHHHHHHHHHHHHHHTGGG-CH------HHHHTTTTSB
T ss_pred             HcCCcceeeEEEccceEEec-CCCEeECCCCHHHHHhCcCCCHHHHHHHHHHHHHHHHhcc-Ch------HHHhhhccCC
Confidence            99999999999999988874 8889999999999999999999999999999998876432 11      1123456799


Q ss_pred             HHHHHHhcCCChhHHHHHHHHHHhccCCchhhhhhhchhhHHHHHHHHHhhhccccCCCccEEeecCCcchHHHHHHHHH
Q 014883          210 FAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRA  289 (416)
Q Consensus       210 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~  289 (416)
                      +.+|++++++++.+++++.+.+++.....      .++..++.++..|+.++++|+.  ++++||+||+++|+++|+|++
T Consensus       317 ~~d~L~~~~ls~~L~~~L~~~lal~~~~~------~pa~~~l~~i~~~l~sl~~yg~--sg~~yp~GG~g~L~qaL~r~~  388 (650)
T 1vg0_A          317 FSEYLKTQKLTPNLQYFVLHSIAMTSETT------SCTVDGLKATKKFLQCLGRYGN--TPFLFPLYGQGELPQCFCRMC  388 (650)
T ss_dssp             HHHHHTTSSSCHHHHHHHHHHTTC--CCS------CBHHHHHHHHHHHHHHTTSSSS--SSEEEETTCTTHHHHHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHhccCCCC------CchhHHHHHHHHHHHHHHhhcc--CceEEeCCchhHHHHHHHHHH
Confidence            99999999999999998887655543221      2345556667788888888874  348999999999999999999


Q ss_pred             HhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCCCCCCCCCchhhhhhhhhhccccCCcceEEEEE
Q 014883          290 AVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGI  369 (416)
Q Consensus       290 ~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i  369 (416)
                      +++||+|+|+++|++|.++.++|++++|++.+|++++||+||++|.++ +...              ..+...+.++|++
T Consensus       389 ~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~~~~l-p~~~--------------~~~~~~~~v~R~i  453 (650)
T 1vg0_A          389 AVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYL-SENT--------------CSRVQYRQISRAV  453 (650)
T ss_dssp             HHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGGB-CTTT--------------TTTCCCEEEEEEE
T ss_pred             HHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEEChhhc-CHhH--------------hccccccceEEEE
Confidence            999999999999999999721188999988889999999999988765 3311              0112357899999


Q ss_pred             EEecCCCCCCC---CceEEEeCCCCCCCCCCCeEEEEEecCCCccCCCCC
Q 014883          370 CITRSSLKPDL---SNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGM  416 (416)
Q Consensus       370 ~i~~~p~~~~~---~~~~~~~pp~~~~~~~~~~v~~~~~~~~~~~~p~G~  416 (416)
                      +|+++|+.+..   +.++++||+.+ +  ..+.||+++.++++++||+|+
T Consensus       454 ~i~~~pi~~~~~~~~~~~iiiP~~~-g--~~~~V~i~~~Ss~~~~cP~G~  500 (650)
T 1vg0_A          454 LITDGSVLRTDADQQVSILTVPAEE-P--GSFAVRVIELCSSTMTCMKGT  500 (650)
T ss_dssp             EEESSCSSCCSCCCCCEEEEECCSS-T--TSCCEEEEEECGGGTSSCTTC
T ss_pred             EEecCCCCCcCCCcceEEEEccCcc-C--CCCCEEEEEeCCCCCCCCCCC
Confidence            99999987542   45788898766 2  357899999999999999996

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=100.00  E-value=3.1e-38  Score=315.60  Aligned_cols=350  Identities=25%  Similarity=0.492  Sum_probs=255.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCccccccccccccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (416)
                      +.++||||||||++||+||++|+++|++|+||||++++||+++|++.+|...+.+ .+..      .   ..+    ...
T Consensus         9 ~~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~g~~~~~d-~~~~------~---~~~----~~~   74 (453)
T 2bcg_G            9 DTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFK-QNPI------S---KEE----RES   74 (453)
T ss_dssp             CCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHC-SSCC------C---HHH----HHH
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCccccceeccchhceec-cCCc------c---ccC----cch
Confidence            4568999999999999999999999999999999999999999999876212211 1000      0   000    000


Q ss_pred             cccCCCCceEeeCCCCeEEeeCchHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhhcCCCChHHHHHHH
Q 014883          100 LLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLM  179 (416)
Q Consensus       100 ~~~~~~~~~~~dl~Gp~~~~~~~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l~  179 (416)
                      .+ .....|.+++. |++++..+.+.++|.++|+.+|++|...+..|.+. +|+.+++|.+..+.+....++..+++.++
T Consensus        75 ~~-~~g~~~~~~l~-P~~l~~~~~l~~ll~~lg~~~~l~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~l~~~~~~~~~~  151 (453)
T 2bcg_G           75 KF-GKDRDWNVDLI-PKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFK-QGKIYKVPANEIEAISSPLMGIFEKRRMK  151 (453)
T ss_dssp             HH-CCGGGCCEESS-CCBEETTSHHHHHHHHHTGGGTCCEEECCCEEEEE-TTEEEECCSSHHHHHHCTTSCHHHHHHHH
T ss_pred             hc-ccccceeeccc-cceeecCcHHHHHHHhcCCccceEEEEccceeEEe-CCeEEECCCChHHHHhhhccchhhHHHHH
Confidence            00 12245778995 99999999999999999999999999998878764 88999999986677877777888999999


Q ss_pred             HHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHHhccCCchhhhhhhchhhHHHHHHHHHh
Q 014883          180 RFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNS  259 (416)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~  259 (416)
                      +|+..+..+....+..   .. ..++...|+.+|+++++.++.+++++.+.+.+.... +.  ...++...+.++..|+.
T Consensus       152 ~~~~~~~~~~~~~p~~---~~-~~~~~~~s~~~~l~~~~~~~~l~~~l~~~~~l~~~~-~~--~~~p~~~~~~~~~~~~~  224 (453)
T 2bcg_G          152 KFLEWISSYKEDDLST---HQ-GLDLDKNTMDEVYYKFGLGNSTKEFIGHAMALWTND-DY--LQQPARPSFERILLYCQ  224 (453)
T ss_dssp             HHHHHHHHCBTTBGGG---ST-TCCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSSS-GG--GGSBHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCchh---hh-ccccccCCHHHHHHHhCCCHHHHHHHHHHHHhccCc-cc--cCCchHHHHHHHHHHHH
Confidence            9998877654322210   00 012457899999999999999999887654432110 00  00133444555566777


Q ss_pred             hhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCCCC
Q 014883          260 SIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVP  339 (416)
Q Consensus       260 s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~~~~~  339 (416)
                      +++.++.  +++.||+||+++|+++|++.+++.|++|+++++|++|..+.+++++++|++ +|++++||+||+++.....
T Consensus       225 s~~~~~~--~~~~~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~-~g~~~~ad~VV~a~~~~~~  301 (453)
T 2bcg_G          225 SVARYGK--SPYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT-KLGTFKAPLVIADPTYFPE  301 (453)
T ss_dssp             HHHHHSS--CSEEEETTCTTHHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE-TTEEEECSCEEECGGGCGG
T ss_pred             HHHhhcC--CceEeeCCCHHHHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE-CCeEEECCEEEECCCccch
Confidence            6666653  347799999999999999999999999999999999987511467778886 6889999999976543211


Q ss_pred             CCCCCchhhhhhhhhhccccCCcc-eEEEEEEEecCCCCC--CCCceEEEeCCCCCCCCCCCeEEEEEecCCCccCCCCC
Q 014883          340 GSLASSHQQLQESFQAFSLSDNKG-KVARGICITRSSLKP--DLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGM  416 (416)
Q Consensus       340 ~l~~~~~~~l~~~~~~~~~~~~~~-~~~k~i~i~~~p~~~--~~~~~~~~~pp~~~~~~~~~~v~~~~~~~~~~~~p~G~  416 (416)
                      +               +.   ... ...++++++++|+..  .+....+++|....+.  .+.+||.+.+...+.||+|+
T Consensus       302 ~---------------l~---~~~~~~~~~~~i~~~~~~~~~~~~~~~ii~~~~~~~~--~~~~~v~~~s~~d~~aP~G~  361 (453)
T 2bcg_G          302 K---------------CK---STGQRVIRAICILNHPVPNTSNADSLQIIIPQSQLGR--KSDIYVAIVSDAHNVCSKGH  361 (453)
T ss_dssp             G---------------EE---EEEEEEEEEEEEESSCCTTSTTCSSEEEEECGGGTTC--SSCEEEEEEEGGGTSSCTTC
T ss_pred             h---------------hc---ccCCcceeEEEEEccccCCCCCCccEEEEeCccccCC--CCCEEEEEeCCCCCCCCCCc
Confidence            1               10   123 578889999998863  3456677888654443  47899999987778999996

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=100.00  E-value=7.8e-37  Score=303.63  Aligned_cols=344  Identities=27%  Similarity=0.521  Sum_probs=255.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccC-hhhhHhhhhcCCCCCCCCCCCcccccccccccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS-IADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (416)
                      +.++||||||||++||+||++|+++|++|+|+|+++++||+++|++ +..... ..+.+..       .+..        
T Consensus         4 ~~~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~s~~~~~~g~~-~~~~~~~-------~~~~--------   67 (433)
T 1d5t_A            4 DEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYK-RFQLLEG-------PPET--------   67 (433)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTSCEECSHHHHHH-HTTCTTC-------CCGG--------
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCccccccccccHHHHHh-hccCCCC-------ChhH--------
Confidence            4578999999999999999999999999999999999999999998 532110 1110000       0000        


Q ss_pred             ccccCCCCceEeeCCCCeEEeeCchHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhhcCCCChHHHHHH
Q 014883           99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (416)
Q Consensus        99 ~~~~~~~~~~~~dl~Gp~~~~~~~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l  178 (416)
                        + .....|.+|+ ||++++..+.+.+++.++|+.+|++|...+..|++. +|+.+.+|.+..+.+.....+..+++.+
T Consensus        68 --~-~~g~~~~~d~-gP~~l~~~~~l~~ll~~lgl~~~l~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~l~~~~~~~~~  142 (433)
T 1d5t_A           68 --M-GRGRDWNVDL-IPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYK-GGKIYKVPSTETEALASNLMGMFEKRRF  142 (433)
T ss_dssp             --G-CCGGGCCEES-SCCBEETTSHHHHHHHHHTGGGGCCEEECCEEEEEE-TTEEEECCCSHHHHHHCSSSCHHHHHHH
T ss_pred             --h-cccCceEEcc-CcceeeccchHHHHHHHcCCccceEEEEeCceEEee-CCEEEECCCCHHHHhhCcccChhhHHHH
Confidence              1 1225678999 599998888999999999999999999988877764 8899999998767777777777889999


Q ss_pred             HHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHHhccCCchhhhhhhchhhHHHHHHHHH
Q 014883          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN  258 (416)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  258 (416)
                      ++|+..+.++....+...   + ..++...|+.+|+++++.++.+++++.+.+++.. ..++  .+.++..++..+..|.
T Consensus       143 ~~~~~~~~~~~~~~p~~~---~-~~~~~~~s~~~~l~~~~~~~~l~~~l~~~~~~~~-~~~~--~~~p~~~~~~~~~~~~  215 (433)
T 1d5t_A          143 RKFLVFVANFDENDPKTF---E-GVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYR-TDDY--LDQPCLETINRIKLYS  215 (433)
T ss_dssp             HHHHHHHHHCCTTCGGGG---T-TCCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCS-SSGG--GGSBSHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcccCchhc---c-ccccccCCHHHHHHHcCCCHHHHHHHHHHHHhcc-CCCc--cCCCHHHHHHHHHHHH
Confidence            999988776543222111   1 1135678999999999999999998766533321 1111  1235555566677777


Q ss_pred             hhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCCC
Q 014883          259 SSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTV  338 (416)
Q Consensus       259 ~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~~~~  338 (416)
                      .+++.++.  +++++|+||+++|+++|++.+++.|++|+++++|++|..+  ++++++|+ .+|++++||+||++.... 
T Consensus       216 ~s~~~~g~--~~~~~p~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~--~~~v~~v~-~~g~~~~ad~VV~a~~~~-  289 (433)
T 1d5t_A          216 ESLARYGK--SPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVK-SEGEVARCKQLICDPSYV-  289 (433)
T ss_dssp             HSCCSSSC--CSEEEETTCTTHHHHHHHHHHHHHTCCCBCSCCCCEEEEE--TTEEEEEE-ETTEEEECSEEEECGGGC-
T ss_pred             HHHHhcCC--CcEEEeCcCHHHHHHHHHHHHHHcCCEEECCCEEEEEEEe--CCEEEEEE-ECCeEEECCEEEECCCCC-
Confidence            76666653  3578999999999999999999999999999999999987  77777787 588899999999765432 


Q ss_pred             CCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCCCCCC--CCceEEEeCCCCCCCCCCCeEEEEEecCCCccCCCCC
Q 014883          339 PGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD--LSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGM  416 (416)
Q Consensus       339 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~~~~--~~~~~~~~pp~~~~~~~~~~v~~~~~~~~~~~~p~G~  416 (416)
                      +.       .++          ......+++++.++|+...  +....++||....+.  .+.++|.+.+.+++.||+|+
T Consensus       290 ~~-------~~~----------~~~~~~~~~~il~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~v~~~s~d~~~aP~G~  350 (433)
T 1d5t_A          290 PD-------RVR----------KAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNR--KSDIYVCMISYAHNVAAQGK  350 (433)
T ss_dssp             GG-------GEE----------EEEEEEEEEEEESSCCTTSTTCSSEEEEECGGGTTC--SSCEEEEEEEGGGTSSCTTC
T ss_pred             cc-------ccc----------ccCcceeEEEEEcCcccccCCCceEEEEeCccccCC--CCCEEEEEECCCCcccCCCC
Confidence            11       010          0124666778889887632  356777888654432  47899999998999999996

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=100.00  E-value=1.1e-32  Score=278.95  Aligned_cols=335  Identities=13%  Similarity=0.121  Sum_probs=197.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCcccccccccccccccc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS  102 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (416)
                      .+|||||||++||+||++|+++|++|+||||++++||+++|++.+|                                  
T Consensus         2 k~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~GG~~~t~~~~G----------------------------------   47 (501)
T 4dgk_A            2 KPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKPGGRAYVYEDQG----------------------------------   47 (501)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEECCC-------CEEEETT----------------------------------
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCCCCcEEEEEeCC----------------------------------
Confidence            5899999999999999999999999999999999999999987543                                  


Q ss_pred             CCCCceEeeCCCCeEEeeCchHHHHHHhcC--ccccccccccccee-eeccCCceeecCCChhhhhhc-CCCChHHHHHH
Q 014883          103 QHPRNFNLDVSGPRVLFCADHAVDLMLKSG--ASHYLEFKSIDATF-MLDADAKLCSVPDSRAAIFKD-KSLGLMEKNQL  178 (416)
Q Consensus       103 ~~~~~~~~dl~Gp~~~~~~~~~~~~l~~~g--~~~~~~f~~~~~~~-~~~~~g~~~~~p~~~~~~~~~-~~l~~~~k~~l  178 (416)
                           |.+|. ||+++...+.+.+++...+  +.+++++...++.+ +...+|+.+.++.+....... ..+++.+...+
T Consensus        48 -----~~~D~-G~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~  121 (501)
T 4dgk_A           48 -----FTFDA-GPTVITDPSAIEELFALAGKQLKEYVELLPVTPFYRLCWESGKVFNYDNDQTRLEAQIQQFNPRDVEGY  121 (501)
T ss_dssp             -----EEEEC-SCCCBSCTHHHHHHHHTTTCCGGGTCCEEEESSSEEEEETTSCEEEECSCHHHHHHHHHHHCTHHHHHH
T ss_pred             -----EEEec-CceeecCchhHHHHHHHhcchhhhceeeEecCcceEEEcCCCCEEEeeccHHHHHHHHhhcCccccchh
Confidence                 56788 4888766666666776655  56778888877766 333578888888775433221 22346677777


Q ss_pred             HHHHHHHHhhcCCCcc---ccc------cccccccc----cCCcHHHHHHhcCCChhHHHHHHHH-HHhccCCchhhhhh
Q 014883          179 MRFFKLVQGHLSLDES---EEN------NVRISEED----LDSPFAEFLTKMKLPHKIKSIVLYA-IAMADYDQEVSEYV  244 (416)
Q Consensus       179 ~~~~~~~~~~~~~~~~---~~~------~~~~~~~~----~~~t~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  244 (416)
                      .+|++.++........   ..+      ........    ...++.++++++..++.++.++.+. ........     +
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g~~p~-----~  196 (501)
T 4dgk_A          122 RQFLDYSRAVFKEGYLKLGTVPFLSFRDMLRAAPQLAKLQAWRSVYSKVASYIEDEHLRQAFSFHSLLVGGNPF-----A  196 (501)
T ss_dssp             HHHHHHHHHHTSSSCC--CCCCCCCHHHHHHSGGGTTTSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHSCC-------
T ss_pred             hhHHHHHHHhhhhhhhhccccccchhhhhhhhhhhhhhhhhcccHHHHHHHHhccHHHHhhhhhhhcccCCCcc-----h
Confidence            7887766544321100   000      00000111    1146778888888888888876532 21111111     1


Q ss_pred             hchhhHHHHHHHHHhhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcE
Q 014883          245 LKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQD  324 (416)
Q Consensus       245 ~s~~~~~~~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~  324 (416)
                      .++.   ..+..++.  ...|     .+||+||+++|+++|++.++++|++|++|++|++|+++  ++++++|+++||++
T Consensus       197 ~~~~---~~~~~~~~--~~~G-----~~~p~GG~~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~--~~~~~gV~~~~g~~  264 (501)
T 4dgk_A          197 TSSI---YTLIHALE--REWG-----VWFPRGGTGALVQGMIKLFQDLGGEVVLNARVSHMETT--GNKIEAVHLEDGRR  264 (501)
T ss_dssp             CCCT---HHHHHHHH--SCCC-----EEEETTHHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE--TTEEEEEEETTSCE
T ss_pred             hhhh---hhhhhhhh--ccCC-----eEEeCCCCcchHHHHHHHHHHhCCceeeecceeEEEee--CCeEEEEEecCCcE
Confidence            1221   11222221  1222     57999999999999999999999999999999999998  88999999999999


Q ss_pred             EEcCEEEEC--CCCCCCCCCCCchhhhhhh-hhhccccCCcceEEEEEEEecCCCCCCCCceEEEeCCCC-CC-------
Q 014883          325 ILSHKLVLD--PSFTVPGSLASSHQQLQES-FQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRS-LF-------  393 (416)
Q Consensus       325 i~Ad~VI~~--p~~~~~~l~~~~~~~l~~~-~~~~~~~~~~~~~~k~i~i~~~p~~~~~~~~~~~~pp~~-~~-------  393 (416)
                      +.||+||++  |..++..|...  .+++.. ...+.......+..+..+.++++....+...++.-+... ..       
T Consensus       265 ~~ad~VV~~a~~~~~~~~Ll~~--~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~~~l~~~~i~~~~~~~~~~~~~~~~~  342 (501)
T 4dgk_A          265 FLTQAVASNADVVHTYRDLLSQ--HPAAVKQSNKLQTKRMSNSLFVLYFGLNHHHDQLAHHTVCFGPRYRELIDEIFNHD  342 (501)
T ss_dssp             EECSCEEECCC-----------------------------CCEEEEEEEEESSCCTTSCSEEEEEECC------------
T ss_pred             EEcCEEEECCCHHHHHHHhccc--cccchhhhhhhhccccCCceeEEEecccCCccccccceeccccchhhhcccccccc
Confidence            999999954  55555554321  122222 222322223344556666677776654444333222110 00       


Q ss_pred             -CCCCCeEEEEEecC-CCccCCCCC
Q 014883          394 -PEQVTSIRVLQLGG-NLAVCPLGM  416 (416)
Q Consensus       394 -~~~~~~v~~~~~~~-~~~~~p~G~  416 (416)
                       -...+.+++.+.+. |.+.+|+|+
T Consensus       343 ~~~~~~~~~v~~~s~~dp~~ap~G~  367 (501)
T 4dgk_A          343 GLAEDFSLYLHAPCVTDSSLAPEGC  367 (501)
T ss_dssp             -CCCEEEEEEECGGGTCGGGSSTTC
T ss_pred             ccccCCceecccCCCCCCCcCCCCC
Confidence             01124566665543 577888885

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=99.95  E-value=1.4e-26  Score=235.30  Aligned_cols=295  Identities=14%  Similarity=0.073  Sum_probs=192.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCccccccccccccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (416)
                      +.++||||||||++||+||+.|+++|++|+|||+++++||+++|++...                               
T Consensus         2 ~~~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr~~t~~~~~-------------------------------   50 (520)
T 1s3e_A            2 SNKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQK-------------------------------   50 (520)
T ss_dssp             -CBCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEECCTT-------------------------------
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCceeecccCC-------------------------------
Confidence            3468999999999999999999999999999999999999999986531                               


Q ss_pred             cccCCCCceEeeCCCCeEEee-CchHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhhcCCCChHHHHHH
Q 014883          100 LLSQHPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (416)
Q Consensus       100 ~~~~~~~~~~~dl~Gp~~~~~-~~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l  178 (416)
                             .+.+|+ |++++.. ...+.+++.++|+..+..+..... +.+ .+|+.+.++...    . ..+.+.+...+
T Consensus        51 -------g~~~d~-G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~-~~~-~~g~~~~~~~~~----p-~~~~~~~~~~~  115 (520)
T 1s3e_A           51 -------VKYVDL-GGSYVGPTQNRILRLAKELGLETYKVNEVERL-IHH-VKGKSYPFRGPF----P-PVWNPITYLDH  115 (520)
T ss_dssp             -------TSCEES-SCCEECTTCHHHHHHHHHTTCCEEECCCSSEE-EEE-ETTEEEEECSSS----C-CCCSHHHHHHH
T ss_pred             -------Cccccc-CceEecCCcHHHHHHHHHcCCcceecccCCce-EEE-ECCEEEEecCCC----C-CCCCHHHHHHH
Confidence                   233677 4787744 347788899999876654432222 222 256666554321    0 01234444334


Q ss_pred             HHHHHHHHhhcCC----CccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHHhccCCchhhhhhhchhhHHHHH
Q 014883          179 MRFFKLVQGHLSL----DESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRL  254 (416)
Q Consensus       179 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~  254 (416)
                      .+++..+..+...    .++..   ....++.+.++.+|+++...++.++.++...... .+..++  .++|+...+   
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~-~~g~~~--~~~s~~~~~---  186 (520)
T 1s3e_A          116 NNFWRTMDDMGREIPSDAPWKA---PLAEEWDNMTMKELLDKLCWTESAKQLATLFVNL-CVTAET--HEVSALWFL---  186 (520)
T ss_dssp             HHHHHHHHHHHTTSCTTCGGGS---TTHHHHHTSBHHHHHHHHCSSHHHHHHHHHHHHH-HHSSCT--TTSBHHHHH---
T ss_pred             HHHHHHHHHHHhhcCcCCCccc---cchhhhhccCHHHHHHhhCCCHHHHHHHHHHHhh-hcCCCh--HHhHHHHHH---
Confidence            4444333222211    11100   0012356789999999988888887766532111 112222  245654433   


Q ss_pred             HHHHhhhccc----cC-CCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCE
Q 014883          255 ALYNSSIGRF----QN-ALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHK  329 (416)
Q Consensus       255 ~~~~~s~~~~----g~-~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~  329 (416)
                       .++...+..    .. ..+.+.+++||+++|+++|++.   +|++|++|++|++|..+  ++++ .|++.+|+++.||+
T Consensus       187 -~~~~~~g~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~---lg~~i~~~~~V~~i~~~--~~~v-~v~~~~g~~~~ad~  259 (520)
T 1s3e_A          187 -WYVKQCGGTTRIISTTNGGQERKFVGGSGQVSERIMDL---LGDRVKLERPVIYIDQT--RENV-LVETLNHEMYEAKY  259 (520)
T ss_dssp             -HHHHTTTCHHHHHCSTTSTTSEEETTCTHHHHHHHHHH---HGGGEESSCCEEEEECS--SSSE-EEEETTSCEEEESE
T ss_pred             -HHHhhcCchhhhcccCCCcceEEEeCCHHHHHHHHHHH---cCCcEEcCCeeEEEEEC--CCeE-EEEECCCeEEEeCE
Confidence             233222110    00 1123578999999999988764   48899999999999876  4554 58888999999999


Q ss_pred             EEEC-CCCCCCCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCCCCC
Q 014883          330 LVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP  378 (416)
Q Consensus       330 VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~~~  378 (416)
                      ||++ |...+.++  .++|+||..+.+..++..++.+.|.++.|++||-+
T Consensus       260 VI~a~p~~~l~~l--~~~p~lp~~~~~~i~~~~~~~~~kv~l~~~~~~w~  307 (520)
T 1s3e_A          260 VISAIPPTLGMKI--HFNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFWR  307 (520)
T ss_dssp             EEECSCGGGGGGS--EEESCCCHHHHHHTTSCCBCCEEEEEEECSSCGGG
T ss_pred             EEECCCHHHHcce--eeCCCCCHHHHHHHHhCCCcceEEEEEEeCCCccc
Confidence            9965 54444554  35678888877777788899999999999999743

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=99.94  E-value=1.1e-25  Score=224.62  Aligned_cols=293  Identities=11%  Similarity=0.105  Sum_probs=185.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCccccccccccccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (416)
                      +.++||||||||++||+||+.|+++|++|+|||+++++||++.+++..|                               
T Consensus         3 ~~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g-------------------------------   51 (453)
T 2yg5_A            3 TLQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDG-------------------------------   51 (453)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTCCEEEETT-------------------------------
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCceeccccCC-------------------------------
Confidence            4568999999999999999999999999999999999999999876532                               


Q ss_pred             cccCCCCceEeeCCCCeEEee-CchHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhhcCCCChHHHHHH
Q 014883          100 LLSQHPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (416)
Q Consensus       100 ~~~~~~~~~~~dl~Gp~~~~~-~~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l  178 (416)
                              +.+|+ |++++.. ...+.+++.++|+..+..+......+.. .+|+.+.+....      ..+++.....+
T Consensus        52 --------~~~~~-g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~g~~~~~~~~~------~~~~~~~~~~~  115 (453)
T 2yg5_A           52 --------AVLEI-GGQWVSPDQTALISLLDELGLKTFERYREGESVYIS-SAGERTRYTGDS------FPTNETTKKEM  115 (453)
T ss_dssp             --------EEEEC-SCCCBCTTCHHHHHHHHHTTCCEEECCCCSEEEEEC-TTSCEEEECSSS------CSCCHHHHHHH
T ss_pred             --------ceecc-CCeEecCccHHHHHHHHHcCCcccccccCCCEEEEe-CCCceeeccCCC------CCCChhhHHHH
Confidence                    33566 3665533 3467888889998776655433222222 125555443210      01223222222


Q ss_pred             HHHHHHH----HhhcCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHHhccCCchhhhh-hhchhhHHHH
Q 014883          179 MRFFKLV----QGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEY-VLKTRDGINR  253 (416)
Q Consensus       179 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~~~  253 (416)
                      .+++..+    .......++...   ...++.+.++.+|++++..++.++.++...+ ...+..++  . ++|+...+. 
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~s~~~~~~-  188 (453)
T 2yg5_A          116 DRLIDEMDDLAAQIGAEEPWAHP---LARDLDTVSFKQWLINQSDDAEARDNIGLFI-AGGMLTKP--AHSFSALQAVL-  188 (453)
T ss_dssp             HHHHHHHHHHHHHHCSSCGGGST---THHHHHSSBHHHHHHHHCSCHHHHHHHHHHH-CCCCCCSC--TTSSBHHHHHH-
T ss_pred             HHHHHHHHHHHhhcCCCCCCCCc---chhhhhhccHHHHHHhhcCCHHHHHHHHHHH-HhhcccCC--cccccHHHHHH-
Confidence            2222211    111111111110   0123457899999999888888887665332 12222232  2 456544332 


Q ss_pred             HHHHHhhhccc----cCCCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCE
Q 014883          254 LALYNSSIGRF----QNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHK  329 (416)
Q Consensus       254 ~~~~~~s~~~~----g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~  329 (416)
                         ++...+.+    ....+.+.+++||+++|+++|++   .+|++|++|++|++|..+  ++..+.|++ +|++++||+
T Consensus       189 ---~~~~~g~~~~~~~~~~~~~~~~~gG~~~l~~~l~~---~lg~~i~~~~~V~~i~~~--~~~~v~v~~-~~~~~~ad~  259 (453)
T 2yg5_A          189 ---MAASAGSFSHLVDEDFILDKRVIGGMQQVSIRMAE---ALGDDVFLNAPVRTVKWN--ESGATVLAD-GDIRVEASR  259 (453)
T ss_dssp             ---HHHHTTCHHHHHCHHHHTCEEETTCTHHHHHHHHH---HHGGGEECSCCEEEEEEE--TTEEEEEET-TTEEEEEEE
T ss_pred             ---HhccCCcHhhhccCCCcceEEEcCChHHHHHHHHH---hcCCcEEcCCceEEEEEe--CCceEEEEE-CCeEEEcCE
Confidence               22222111    00001256899999999999875   358999999999999987  554245774 788999999


Q ss_pred             EEEC-CCCCCCCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCCCC
Q 014883          330 LVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK  377 (416)
Q Consensus       330 VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~~  377 (416)
                      ||++ |...+.++  .++|+||..+....++..++.+.|..+.|++||-
T Consensus       260 VI~a~p~~~~~~l--~~~p~lp~~~~~~i~~~~~~~~~kv~l~~~~~~w  306 (453)
T 2yg5_A          260 VILAVPPNLYSRI--SYDPPLPRRQHQMHQHQSLGLVIKVHAVYETPFW  306 (453)
T ss_dssp             EEECSCGGGGGGS--EEESCCCHHHHHHGGGEEECCEEEEEEEESSCGG
T ss_pred             EEEcCCHHHHhcC--EeCCCCCHHHHHHHhcCCCcceEEEEEEECCCCC
Confidence            9964 54444554  2467788776666666778899999999999873

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=99.94  E-value=2.4e-25  Score=223.78  Aligned_cols=288  Identities=15%  Similarity=0.176  Sum_probs=184.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCccccccccccccccc
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL  101 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (416)
                      .+||||||||++||+||+.|+++|++|+|||+++++||+++|++.+|                                 
T Consensus        16 ~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr~~t~~~~g---------------------------------   62 (478)
T 2ivd_A           16 GMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAG---------------------------------   62 (478)
T ss_dssp             -CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEEETT---------------------------------
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceeeeeccCC---------------------------------
Confidence            57999999999999999999999999999999999999999987543                                 


Q ss_pred             cCCCCceEeeCCCCeEEee-CchHHHHHHhcCcccccccccc--cceeeeccCCceeecCCChhhhhhcCCCChHHHHHH
Q 014883          102 SQHPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKSI--DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (416)
Q Consensus       102 ~~~~~~~~~dl~Gp~~~~~-~~~~~~~l~~~g~~~~~~f~~~--~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l  178 (416)
                            +.+|. |++++.. ...+.+++.++|+...+.+...  ...+++. +|+.+.+|.+..+.+....++..++..+
T Consensus        63 ------~~~~~-g~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~~~~~~~~~~~  134 (478)
T 2ivd_A           63 ------YLVEQ-GPNSFLDREPATRALAAALNLEGRIRAADPAAKRRYVYT-RGRLRSVPASPPAFLASDILPLGARLRV  134 (478)
T ss_dssp             ------EEEES-SCCCEETTCHHHHHHHHHTTCGGGEECSCSSCCCEEEEE-TTEEEECCCSHHHHHTCSSSCHHHHHHH
T ss_pred             ------eeeec-ChhhhhhhhHHHHHHHHHcCCcceeeecCccccceEEEE-CCEEEECCCCHHHhccCCCCCHHHHHHH
Confidence                  44777 4777754 3467888999998765544321  1234443 7888888887766665545544433321


Q ss_pred             HHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHH-HhccCCchhhhhhhchhhHHHHHHHH
Q 014883          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAI-AMADYDQEVSEYVLKTRDGINRLALY  257 (416)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~~~~~~~  257 (416)
                            +...... .        .....+.++.+|+++...++.++.++...+ ..  +..++  .++|+...+..+..+
T Consensus       135 ------~~~~~~~-~--------~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~s~~~~~~~~~~~  195 (478)
T 2ivd_A          135 ------AGELFSR-R--------APEGVDESLAAFGRRHLGHRATQVLLDAVQTGI--YAGDV--EQLSVAATFPMLVKM  195 (478)
T ss_dssp             ------HGGGGCC-C--------CCTTCCCBHHHHHHHHTCHHHHHHTHHHHHHHH--HCCCT--TTBBHHHHCHHHHHH
T ss_pred             ------hhhhhcC-C--------CCCCCCCCHHHHHHHhhCHHHHHHHHHHHhcee--ecCCH--HHhhHHHHhHHHHHH
Confidence                  2222111 0        112456899999997543333333332111 11  12222  245554443333322


Q ss_pred             Hhhhccc-----------------cCCC----ccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEE
Q 014883          258 NSSIGRF-----------------QNAL----GALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKG  316 (416)
Q Consensus       258 ~~s~~~~-----------------g~~~----~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~g  316 (416)
                      ....+.+                 ....    +.+++++||+++|+++|++.+   |++|+++++|++|..+  +++ +.
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l---g~~i~~~~~V~~i~~~--~~~-~~  269 (478)
T 2ivd_A          196 EREHRSLILGAIRAQKAQRQAALPAGTAPKLSGALSTFDGGLQVLIDALAASL---GDAAHVGARVEGLARE--DGG-WR  269 (478)
T ss_dssp             HHHHSSHHHHHHHHHHHHTCC----CCSCCCCCCEEEETTCTHHHHHHHHHHH---GGGEESSEEEEEEECC----C-CE
T ss_pred             HHhcCcHHHHHHHhhhccccccCcccccccccccEEEECCCHHHHHHHHHHHh---hhhEEcCCEEEEEEec--CCe-EE
Confidence            1110000                 0000    237899999999999997654   7899999999999886  444 67


Q ss_pred             EEe---CCCcEEEcCEEEEC-CCCCCCCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCCCCCC
Q 014883          317 VRL---ASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD  379 (416)
Q Consensus       317 V~l---~~G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~~~~  379 (416)
                      |++   .+|++++||+||++ |...+.++    .|++|+.+....++..++.+.+..+.+++|+-+.
T Consensus       270 v~~~~~~~g~~~~ad~vV~a~~~~~~~~l----l~~l~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~  332 (478)
T 2ivd_A          270 LIIEEHGRRAELSVAQVVLAAPAHATAKL----LRPLDDALAALVAGIAYAPIAVVHLGFDAGTLPA  332 (478)
T ss_dssp             EEEEETTEEEEEECSEEEECSCHHHHHHH----HTTTCHHHHHHHHTCCBCCEEEEEEEECTTSSCC
T ss_pred             EEEeecCCCceEEcCEEEECCCHHHHHHH----hhccCHHHHHHHhcCCCCcEEEEEEEEccccCCC
Confidence            877   67888999999965 43332332    2345554444445567788999999999986443

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=99.93  E-value=1.8e-24  Score=214.00  Aligned_cols=276  Identities=14%  Similarity=0.096  Sum_probs=171.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCcccccccccccccccc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS  102 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (416)
                      +||||||||++||+||++|+++|++|+||||++++||++.++..+|                                  
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G----------------------------------   46 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGRFTNLSYKG----------------------------------   46 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTSSEEEETT----------------------------------
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCCCCceeeeccCC----------------------------------
Confidence            5999999999999999999999999999999999999999986543                                  


Q ss_pred             CCCCceEeeCCCCeEEee---CchHHHHHHhcCcccccccccccceeeec-cC--------CceeecCCChhhhhhcCCC
Q 014883          103 QHPRNFNLDVSGPRVLFC---ADHAVDLMLKSGASHYLEFKSIDATFMLD-AD--------AKLCSVPDSRAAIFKDKSL  170 (416)
Q Consensus       103 ~~~~~~~~dl~Gp~~~~~---~~~~~~~l~~~g~~~~~~f~~~~~~~~~~-~~--------g~~~~~p~~~~~~~~~~~l  170 (416)
                           |.+|. ||+++..   ...+.+++.++|+...+.... .....+. .+        ++.+.++.    .  ...+
T Consensus        47 -----~~~d~-G~~~~~~~~~~~~~~~l~~~lg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~  113 (425)
T 3ka7_A           47 -----FQLSS-GAFHMLPNGPGGPLACFLKEVEASVNIVRSE-MTTVRVPLKKGNPDYVKGFKDISFND----F--PSLL  113 (425)
T ss_dssp             -----EEEES-SSCSCBTTGGGSHHHHHHHHTTCCCCEEECC-CCEEEEESSTTCCSSTTCEEEEEGGG----G--GGGS
T ss_pred             -----cEEcC-CCceEecCCCccHHHHHHHHhCCCceEEecC-CceEEeecCCCcccccccccceehhh----h--hhhC
Confidence                 34555 3543321   225677788888754322221 1111110 01        33333321    1  1235


Q ss_pred             ChHHHHHHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHH-HhccCCchhhhhhhchhh
Q 014883          171 GLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAI-AMADYDQEVSEYVLKTRD  249 (416)
Q Consensus       171 ~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~  249 (416)
                      ++.++..+...+..+..               ....+.++.+|++++..++.++.++.... ....  .++  .++|+..
T Consensus       114 ~~~~~~~~~~~~~~~~~---------------~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~s~~~  174 (425)
T 3ka7_A          114 SYKDRMKIALLIVSTRK---------------NRPSGSSLQAWIKSQVSDEWLIKFADSFCGWALS--LKS--DEVPVEE  174 (425)
T ss_dssp             CHHHHHHHHHHHHHTTT---------------SCCCSSBHHHHHHHHCCCHHHHHHHHHHHHHHHS--SCG--GGSBHHH
T ss_pred             CHHHHHHHHHHHHhhhh---------------cCCCCCCHHHHHHHhcCCHHHHHHHHHHHHHHhC--CCc--ccchHHH
Confidence            56666655443322110               01235789999998766666666543211 1111  122  2456544


Q ss_pred             HHHHHHHHHhhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCE
Q 014883          250 GINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHK  329 (416)
Q Consensus       250 ~~~~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~  329 (416)
                      .+..+..+.    ..+   + ..+++||++.|+++|++.+++.|++|+++++|++|..+  ++++++|++ +|++++||+
T Consensus       175 ~~~~~~~~~----~~~---~-~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~--~~~~~gv~~-~g~~~~ad~  243 (425)
T 3ka7_A          175 VFEIIENMY----RFG---G-TGIPEGGCKGIIDALETVISANGGKIHTGQEVSKILIE--NGKAAGIIA-DDRIHDADL  243 (425)
T ss_dssp             HHHHHHHHH----HHC---S-CEEETTSHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE--TTEEEEEEE-TTEEEECSE
T ss_pred             HHHHHHHHH----hcC---C-ccccCCCHHHHHHHHHHHHHHcCCEEEECCceeEEEEE--CCEEEEEEE-CCEEEECCE
Confidence            443333221    122   1 46899999999999999999999999999999999987  777778886 588999999


Q ss_pred             EEEC-CCCCCCCCCCCchhhh--hhh-hhhccccCCcceEEEEEEEecCCCC
Q 014883          330 LVLD-PSFTVPGSLASSHQQL--QES-FQAFSLSDNKGKVARGICITRSSLK  377 (416)
Q Consensus       330 VI~~-p~~~~~~l~~~~~~~l--~~~-~~~~~~~~~~~~~~k~i~i~~~p~~  377 (416)
                      ||++ |.....+|... .+.+  +.. +..+ ++.....+.+..+.+++|+.
T Consensus       244 VV~a~~~~~~~~ll~~-~~~~~~~~~~~~~~-~~~~~~~~~~v~l~~~~~~~  293 (425)
T 3ka7_A          244 VISNLGHAATAVLCSE-ALSKEADAAYFKMV-GTLQPSAGIKICLAADEPLV  293 (425)
T ss_dssp             EEECSCHHHHHHHTTT-TCCTTTTHHHHHHH-HHCCCBEEEEEEEEESSCSS
T ss_pred             EEECCCHHHHHHhcCC-cccccCCHHHHHHh-hCcCCCceEEEEeecCCCcc
Confidence            9964 33322333211 1111  222 2222 23345567788888998864

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=99.93  E-value=4e-25  Score=223.20  Aligned_cols=295  Identities=15%  Similarity=0.107  Sum_probs=184.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCcccccccccccccccc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS  102 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (416)
                      +||||||||++||+||+.|+++|++|+|||+++++||+++|++.+|                                  
T Consensus        40 ~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GGr~~t~~~~g----------------------------------   85 (495)
T 2vvm_A           40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNIDG----------------------------------   85 (495)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBTTCCEEEETT----------------------------------
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCcceecccCC----------------------------------
Confidence            8999999999999999999999999999999999999999986532                                  


Q ss_pred             CCCCceEeeCCCCeEEee-CchHHHHHHhcCccccccccc----ccceeeeccC--CceeecCCChhhhhhcCCCChHHH
Q 014883          103 QHPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKS----IDATFMLDAD--AKLCSVPDSRAAIFKDKSLGLMEK  175 (416)
Q Consensus       103 ~~~~~~~~dl~Gp~~~~~-~~~~~~~l~~~g~~~~~~f~~----~~~~~~~~~~--g~~~~~p~~~~~~~~~~~l~~~~k  175 (416)
                           +.+|+ |++++.. ...+.+++.++|+.+.+....    ....+++. +  |+...+|..  +...      .-.
T Consensus        86 -----~~~d~-G~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~--~~~~------~~~  150 (495)
T 2vvm_A           86 -----YPYEM-GGTWVHWHQSHVWREITRYKMHNALSPSFNFSRGVNHFQLR-TNPTTSTYMTHE--AEDE------LLR  150 (495)
T ss_dssp             -----EEEEC-SCCCBCTTSHHHHHHHHHTTCTTCEEESCCCSSSCCEEEEE-SSTTCCEEECHH--HHHH------HHH
T ss_pred             -----eeecC-CCeEecCccHHHHHHHHHcCCcceeecccccCCCceEEEec-CCCCceeecCHH--HHHH------HHH
Confidence                 44777 4787743 447888888888854433321    12233332 3  444444421  1100      000


Q ss_pred             HHHHHHHH----HHHhhcCCCccccccccccccccCCcHHHHHHhcC--CChhHHHHHHHHHHhccCCchhhhhhhchhh
Q 014883          176 NQLMRFFK----LVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMK--LPHKIKSIVLYAIAMADYDQEVSEYVLKTRD  249 (416)
Q Consensus       176 ~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  249 (416)
                      ..+.+|++    ..+.... .+..........++.+.|+.+|+++++  .++.++.++...+... +..++  .++|+..
T Consensus       151 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~s~~~  226 (495)
T 2vvm_A          151 SALHKFTNVDGTNGRTVLP-FPHDMFYVPEFRKYDEMSYSERIDQIRDELSLNERSSLEAFILLC-SGGTL--ENSSFGE  226 (495)
T ss_dssp             HHHHHHHCSSSSTTTTTCS-CTTSTTSSTTHHHHHTSBHHHHHHHHGGGCCHHHHHHHHHHHHHH-HSSCT--TTSBHHH
T ss_pred             HHHHHHHccchhhhhhcCC-CCCCcccCcchhhhhhhhHHHHHHHhhccCCHHHHHHHHHHHHHh-cCCCc--chhhHHH
Confidence            11122222    0111100 000000000112345789999999887  7887776655322111 11121  2356544


Q ss_pred             HHHHHHHHHhhhccccCCCccEEeecCCcchHHHHHHHHHHhcC-cEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcC
Q 014883          250 GINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSH  328 (416)
Q Consensus       250 ~~~~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~G-g~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad  328 (416)
                      .+..+......+..+.. ....++++||+++|+++|++.+...| ++|+++++|++|..+  ++. +.|++.+|++++||
T Consensus       227 ~~~~~~~~~~~~~~~~~-~~~~~~~~gG~~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~--~~~-v~v~~~~g~~~~ad  302 (495)
T 2vvm_A          227 FLHWWAMSGYTYQGCMD-CLMSYKFKDGQSAFARRFWEEAAGTGRLGYVFGCPVRSVVNE--RDA-ARVTARDGREFVAK  302 (495)
T ss_dssp             HHHHHHHTTSSHHHHHH-HHHSEEETTCHHHHHHHHHHHHHTTTCEEEESSCCEEEEEEC--SSS-EEEEETTCCEEEEE
T ss_pred             HHHHHHHcCCCHHHHHh-hhceEEeCCCHHHHHHHHHHHhhhcCceEEEeCCEEEEEEEc--CCE-EEEEECCCCEEEcC
Confidence            33322111000000000 01246899999999999999998888 999999999999976  444 56888888899999


Q ss_pred             EEEEC-CCCCCCCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCCC
Q 014883          329 KLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL  376 (416)
Q Consensus       329 ~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~  376 (416)
                      +||++ |...+.++  .+.|+||+.+.+..+...++.+.|..+.|++|+
T Consensus       303 ~vI~a~~~~~l~~i--~~~p~lp~~~~~ai~~~~~~~~~kv~l~~~~~~  349 (495)
T 2vvm_A          303 RVVCTIPLNVLSTI--QFSPALSTERISAMQAGHVSMCTKVHAEVDNKD  349 (495)
T ss_dssp             EEEECCCGGGGGGS--EEESCCCHHHHHHHHHCCCCCCEEEEEEESCGG
T ss_pred             EEEECCCHHHHhhe--eeCCCCCHHHHHHHHhcCCCceeEEEEEECCcc
Confidence            99954 44444554  356788877666666677889999999999876

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=99.93  E-value=1e-24  Score=215.74  Aligned_cols=274  Identities=12%  Similarity=0.096  Sum_probs=168.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCcccccccccccccccc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS  102 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (416)
                      +||||||||++||+||+.|+++|++|+||||++++||++.++..+|                                  
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~~~~~g----------------------------------   46 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGGRFTNLPYKG----------------------------------   46 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSSEEEETT----------------------------------
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCceeEEeccCC----------------------------------
Confidence            3999999999999999999999999999999999999999986543                                  


Q ss_pred             CCCCceEeeCCCCeEEee---CchHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhhcCCCChHHHHHHH
Q 014883          103 QHPRNFNLDVSGPRVLFC---ADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLM  179 (416)
Q Consensus       103 ~~~~~~~~dl~Gp~~~~~---~~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l~  179 (416)
                           |.+|. ||+++..   ...+.+++.++++.  .++...++...+..+|+.++++...      ..+++.++..+.
T Consensus        47 -----~~~d~-G~~~~~~~~~~~~~~~l~~~lg~~--~~~~~~~~~~~~~~~g~~~~~~~~~------~~l~~~~~~~~~  112 (421)
T 3nrn_A           47 -----FQLST-GALHMIPHGEDGPLAHLLRILGAK--VEIVNSNPKGKILWEGKIFHYRESW------KFLSVKEKAKAL  112 (421)
T ss_dssp             -----EEEES-SSCSEETTTTSSHHHHHHHHHTCC--CCEEECSSSCEEEETTEEEEGGGGG------GGCC--------
T ss_pred             -----EEEec-CCeEEEccCCChHHHHHHHHhCCc--ceEEECCCCeEEEECCEEEEcCCch------hhCCHhHHHHHH
Confidence                 44676 4654432   23677788887764  3333333322111267777776421      234556666655


Q ss_pred             HHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcC-CChhHHHHHHHH-HHhccCCchhhhhhhchhhHHHHHHHH
Q 014883          180 RFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMK-LPHKIKSIVLYA-IAMADYDQEVSEYVLKTRDGINRLALY  257 (416)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~  257 (416)
                      +++..+...  .           ....+.++.+|+++++ .++.++.++... .....  .++  .++|+...+..+..+
T Consensus       113 ~~~~~~~~~--~-----------~~~~~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~  175 (421)
T 3nrn_A          113 KLLAEIRMN--K-----------LPKEEIPADEWIKEKIGENEFLLSVLESFAGWADS--VSL--SDLTALELAKEIRAA  175 (421)
T ss_dssp             CCHHHHHTT--C-----------CCCCCSBHHHHHHHHTCCCHHHHHHHHHHHHHHHS--SCG--GGSBHHHHHHHHHHH
T ss_pred             HHHHHHHhc--c-----------CCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHHhcC--CCc--ccCCHHHHHHHHHHH
Confidence            544433211  0           0123478999999873 444455544321 11111  121  245654444433332


Q ss_pred             HhhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC-CCC
Q 014883          258 NSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSF  336 (416)
Q Consensus       258 ~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~-p~~  336 (416)
                      .    .++   + +.+|+||+++|+++|++.+++.|++|+++++|++|..+  ++++  |+ .+|++++||+||++ +..
T Consensus       176 ~----~~~---g-~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~--~~~v--V~-~~g~~~~ad~Vv~a~~~~  242 (421)
T 3nrn_A          176 L----RWG---G-PGLIRGGCKAVIDELERIIMENKGKILTRKEVVEINIE--EKKV--YT-RDNEEYSFDVAISNVGVR  242 (421)
T ss_dssp             H----HHC---S-CEEETTCHHHHHHHHHHHHHTTTCEEESSCCEEEEETT--TTEE--EE-TTCCEEECSEEEECSCHH
T ss_pred             h----hcC---C-cceecCCHHHHHHHHHHHHHHCCCEEEcCCeEEEEEEE--CCEE--EE-eCCcEEEeCEEEECCCHH
Confidence            1    122   1 56999999999999999999999999999999999875  5654  64 68889999999954 333


Q ss_pred             CCCCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCCC
Q 014883          337 TVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL  376 (416)
Q Consensus       337 ~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~  376 (416)
                      ...+|..  .+.+|..+..-..+.......+..+.++++.
T Consensus       243 ~~~~ll~--~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~  280 (421)
T 3nrn_A          243 ETVKLIG--RDYFDRDYLKQVDSIEPSEGIKFNLAVPGEP  280 (421)
T ss_dssp             HHHHHHC--GGGSCHHHHHHHHTCCCCCEEEEEEEEESSC
T ss_pred             HHHHhcC--cccCCHHHHHHHhCCCCCceEEEEEEEcCCc
Confidence            3233321  1223332221122234446777777888874

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=99.92  E-value=1.4e-24  Score=218.11  Aligned_cols=295  Identities=14%  Similarity=0.096  Sum_probs=176.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC--eEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCcccccccccccccc
Q 014883           23 FDLIVIGTGLPESVISAAASASGK--SVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~--~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (416)
                      +||||||||++||+||++|+++|+  +|+|||+++++||+++++...+                                
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~GG~~~t~~~~~--------------------------------   50 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGPN--------------------------------   50 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSBTTCCEEECTT--------------------------------
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCceEEEeccC--------------------------------
Confidence            699999999999999999999999  9999999999999999975421                                


Q ss_pred             ccCCCCceEeeCCCCeEEeeC----chHHHHHHhcCccccccccc-----ccceeeeccCCceeecCCChhhhhhcCCCC
Q 014883          101 LSQHPRNFNLDVSGPRVLFCA----DHAVDLMLKSGASHYLEFKS-----IDATFMLDADAKLCSVPDSRAAIFKDKSLG  171 (416)
Q Consensus       101 ~~~~~~~~~~dl~Gp~~~~~~----~~~~~~l~~~g~~~~~~f~~-----~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~  171 (416)
                            ++.+|. ||+++...    ..+.+++.++|+...+....     ....+++. +|+.+++|.+...++..  +.
T Consensus        51 ------g~~~d~-G~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~--~~  120 (477)
T 3nks_A           51 ------GAIFEL-GPRGIRPAGALGARTLLLVSELGLDSEVLPVRGDHPAAQNRFLYV-GGALHALPTGLRGLLRP--SP  120 (477)
T ss_dssp             ------SCEEES-SCCCBCCCHHHHHHHHHHHHHTTCGGGEEEECTTSHHHHCEEEEE-TTEEEECCCSSCC---C--CT
T ss_pred             ------CeEEEe-CCCcccCCCcccHHHHHHHHHcCCcceeeecCCCCchhcceEEEE-CCEEEECCCChhhcccc--cc
Confidence                  244677 47765432    35678888898875433221     11234444 78888888654333321  11


Q ss_pred             hHHHHHHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHHhccCCchhhhhhhchhhHH
Q 014883          172 LMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGI  251 (416)
Q Consensus       172 ~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  251 (416)
                      +..+..+.+   .+..+..  +        .....+.++.+|+++..-.+....++... ....+..++  .++|+...+
T Consensus       121 ~~~~~~~~~---~~~~~~~--~--------~~~~~~~s~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~--~~ls~~~~~  184 (477)
T 3nks_A          121 PFSKPLFWA---GLRELTK--P--------RGKEPDETVHSFAQRRLGPEVASLAMDSL-CRGVFAGNS--RELSIRSCF  184 (477)
T ss_dssp             TSCSCSSHH---HHTTTTS--C--------CCCSSCCBHHHHHHHHHCHHHHHHTHHHH-HHHHHSSCT--TTBBHHHHC
T ss_pred             hhhhHHHHH---HHHhhhc--C--------CCCCCCcCHHHHHHHhhCHHHHHHHHHHH-hcccccCCH--HHhhHHHHH
Confidence            111111111   1111111  0        11234679999998632222222222211 111122222  245665544


Q ss_pred             HHHHHHHhhhccc----------------------cCCCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEec
Q 014883          252 NRLALYNSSIGRF----------------------QNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQ  309 (416)
Q Consensus       252 ~~~~~~~~s~~~~----------------------g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~  309 (416)
                      ..+..+....+..                      ......+++++||++.|+++|++.+...|++|++|++|++|..+ 
T Consensus       185 ~~l~~~e~~~gsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~g~~i~~~~~V~~i~~~-  263 (477)
T 3nks_A          185 PSLFQAEQTHRSILLGLLLGAGRTPQPDSALIRQALAERWSQWSLRGGLEMLPQALETHLTSRGVSVLRGQPVCGLSLQ-  263 (477)
T ss_dssp             HHHHHHHHHHSCHHHHHHHC-----CCCCHHHHHHHHTTCSEEEETTCTTHHHHHHHHHHHHTTCEEECSCCCCEEEEC-
T ss_pred             HHHHHHHHHcCCHHHHHHHhcccccCCchhhhhhhcccCccEEEECCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEc-
Confidence            4433321111100                      00011368999999999999999999999999999999999886 


Q ss_pred             CCCcEEEEEeCCCcEEEcCEEEEC-CCCCCCCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCCCCCCCCc
Q 014883          310 NSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSN  382 (416)
Q Consensus       310 ~~g~~~gV~l~~G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~~~~~~~  382 (416)
                       ++..+.|++ +++++.||+||++ |...+.++..+..+++   ...+ ....+..+.++.+.|++|+-+....
T Consensus       264 -~~~~~~v~~-~~~~~~ad~vv~a~p~~~~~~ll~~~~~~~---~~~l-~~~~~~~~~~v~l~~~~~~~~~~~~  331 (477)
T 3nks_A          264 -AEGRWKVSL-RDSSLEADHVISAIPASVLSELLPAEAAPL---ARAL-SAITAVSVAVVNLQYQGAHLPVQGF  331 (477)
T ss_dssp             -GGGCEEEEC-SSCEEEESEEEECSCHHHHHHHSCGGGHHH---HHHH-HTCCEEEEEEEEEEETTCCCSSCSS
T ss_pred             -CCceEEEEE-CCeEEEcCEEEECCCHHHHHHhccccCHHH---HHHH-hcCCCCcEEEEEEEECCCCCCCCCc
Confidence             444457764 6678999999964 5443334322222222   2223 3346788889999999987654333

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=99.92  E-value=3.3e-24  Score=215.30  Aligned_cols=301  Identities=15%  Similarity=0.161  Sum_probs=184.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCC--CeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCccccccccccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYA   97 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G--~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (416)
                      |.++||||||||++||+||+.|+++|  ++|+|||+++++||+++|....|                             
T Consensus         2 m~~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~~~~~~~~g-----------------------------   52 (475)
T 3lov_A            2 MSSKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATYREDG-----------------------------   52 (475)
T ss_dssp             CCSCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTTCCEECSTT-----------------------------
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCceeEEEeeCC-----------------------------
Confidence            34689999999999999999999999  99999999999999999986533                             


Q ss_pred             cccccCCCCceEeeCCCCeEEe-eCchHHHHHHhcCcccccccccccceeeeccCCceeecCCC--------hhhhhhcC
Q 014883           98 SRLLSQHPRNFNLDVSGPRVLF-CADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDS--------RAAIFKDK  168 (416)
Q Consensus        98 ~~~~~~~~~~~~~dl~Gp~~~~-~~~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~--------~~~~~~~~  168 (416)
                                +.+|. |++++. ....+.+++.++|+...+........+++. +|+...+|..        ...+++..
T Consensus        53 ----------~~~~~-g~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~~-~g~~~~~p~~~~~~~p~~~~~~~~~~  120 (475)
T 3lov_A           53 ----------FTIER-GPDSYVARKHILTDLIEAIGLGEKLVRNNTSQAFILD-TGGLHPIPKGAVMGIPTDLDLFRQTT  120 (475)
T ss_dssp             ----------CCEES-SCCCEETTSTHHHHHHHHTTCGGGEEECCCCCEEEEE-TTEEEECCSSEETTEESCHHHHTTCS
T ss_pred             ----------EEEec-CchhhhcccHHHHHHHHHcCCcceEeecCCCceEEEE-CCEEEECCCcccccCcCchHHHhhcc
Confidence                      23566 365553 344788889999987665443233344443 6777776643        34455555


Q ss_pred             CCChHHHHHHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHHhccCCchhhhhhhchh
Q 014883          169 SLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTR  248 (416)
Q Consensus       169 ~l~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  248 (416)
                      .++..++..   +.........  .       ......+.++.+|+++..-.+....++... ....+..++  .++|+.
T Consensus       121 ~~~~~~~~~---~~~~~~~~~~--~-------~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~--~~ls~~  185 (475)
T 3lov_A          121 LLTEEEKQE---VADLLLHPSD--S-------LRIPEQDIPLGEYLRPRLGDALVEKLIEPL-LSGIYAGNI--DQMSTF  185 (475)
T ss_dssp             SSCHHHHHH---HHHHHHSCCT--T-------CCCCSSCCBHHHHHHHHHCHHHHHHTHHHH-HHGGGCCCT--TTSBST
T ss_pred             CCChhHHHH---hhCcccCCcc--c-------ccCCCCCcCHHHHHHHHhCHHHHHHHHHHH-hceeecCCh--HHcCHH
Confidence            666555542   2222111100  0       011345689999998742222233333221 111222222  245655


Q ss_pred             hHHHHHHHHHhhhccc-------c-------------CCCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEe
Q 014883          249 DGINRLALYNSSIGRF-------Q-------------NALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTD  308 (416)
Q Consensus       249 ~~~~~~~~~~~s~~~~-------g-------------~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~  308 (416)
                      ..+..+..+....+.+       .             ...+.+.+++||++.|+++|++.+..  ++|+++++|++|..+
T Consensus       186 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~l~~--~~i~~~~~V~~i~~~  263 (475)
T 3lov_A          186 ATYPQFVANEQKAGSLFEGMRLMRPLDQLPQTPQTTIKATGQFLSLETGLESLIERLEEVLER--SEIRLETPLLAISRE  263 (475)
T ss_dssp             TTCHHHHHHHHHHSSHHHHHHHTCC--------------CCSEEEETTCHHHHHHHHHHHCSS--CEEESSCCCCEEEEE
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHhcccccccccccccccCCCcEEeeCChHHHHHHHHHhhccC--CEEEcCCeeeEEEEe
Confidence            4444443322211110       0             00134789999999999988764432  799999999999987


Q ss_pred             cCCCcEEEEEeCCCcEEEcCEEEEC-CCCCCCCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCCCCCCCCceEEEe
Q 014883          309 QNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIF  387 (416)
Q Consensus       309 ~~~g~~~gV~l~~G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~~~~~~~~~~~~  387 (416)
                        ++. +.|++.+| +++||+||++ |...+.++..  ++++     ...++..++.+.+..+.|++|+....+..-+++
T Consensus       264 --~~~-~~v~~~~g-~~~ad~vV~a~p~~~~~~ll~--~~~~-----~~~~~~~~~~~~~v~l~~~~~~~~~~~g~g~l~  332 (475)
T 3lov_A          264 --DGR-YRLKTDHG-PEYADYVLLTIPHPQVVQLLP--DAHL-----PELEQLTTHSTATVTMIFDQQQSLPIEGTGFVV  332 (475)
T ss_dssp             --TTE-EEEECTTC-CEEESEEEECSCHHHHHHHCT--TSCC-----HHHHTCCEEEEEEEEEEEECCSSCSSSSSEEEE
T ss_pred             --CCE-EEEEECCC-eEECCEEEECCCHHHHHHHcC--ccCH-----HHHhcCCCCeEEEEEEEECCcCCCCCCCEEEEe
Confidence              444 56887788 8999999954 5443334321  2222     122445788999999999999922223334445


Q ss_pred             CC
Q 014883          388 PP  389 (416)
Q Consensus       388 pp  389 (416)
                      |+
T Consensus       333 ~~  334 (475)
T 3lov_A          333 NR  334 (475)
T ss_dssp             CT
T ss_pred             cC
Confidence            53

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=99.92  E-value=2.5e-24  Score=215.53  Aligned_cols=297  Identities=12%  Similarity=0.138  Sum_probs=172.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCC------CeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCccccccccc
Q 014883           22 AFDLIVIGTGLPESVISAAASASG------KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISN   95 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G------~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (416)
                      ++||||||||++||+||+.|+++|      ++|+|||+++++||++.|...+|                           
T Consensus         5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG~~~s~~~~g---------------------------   57 (470)
T 3i6d_A            5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVKKDG---------------------------   57 (470)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCTTCCEECCTT---------------------------
T ss_pred             CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCceEEEeccCC---------------------------
Confidence            489999999999999999999999      99999999999999999976533                           


Q ss_pred             cccccccCCCCceEeeCCCCeEEee-CchHHHHHHhcCcccccccccccceeeeccCCceeecCCCh--------hhhhh
Q 014883           96 YASRLLSQHPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSR--------AAIFK  166 (416)
Q Consensus        96 ~~~~~~~~~~~~~~~dl~Gp~~~~~-~~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~--------~~~~~  166 (416)
                                  +.+|. |++++.. ...+.+++.++|+...+........+++. +|+...+|...        ..++.
T Consensus        58 ------------~~~d~-G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~p~~~~~~~~  123 (470)
T 3i6d_A           58 ------------YIIER-GPDSFLERKKSAPQLVKDLGLEHLLVNNATGQSYVLV-NRTLHPMPKGAVMGIPTKIAPFVS  123 (470)
T ss_dssp             ------------CCEES-SCCCEETTCTHHHHHHHHTTCCTTEEECCCCCEEEEC-SSCEEECCC---------------
T ss_pred             ------------EEecc-ChhhhhhCCHHHHHHHHHcCCcceeecCCCCccEEEE-CCEEEECCCCcccCCcCchHHhhc
Confidence                        23666 4665533 44678889999987765433233344443 67777776431        11111


Q ss_pred             cCCCChHHHHHHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHHhccCCchhhhhhhc
Q 014883          167 DKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLK  246 (416)
Q Consensus       167 ~~~l~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  246 (416)
                      ...++..++..  .......   .          ......+.++.+|+++....+....++... ....+..++  .++|
T Consensus       124 ~~~~~~~~~~~--~~~~~~~---~----------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~s  185 (470)
T 3i6d_A          124 TGLFSLSGKAR--AAMDFIL---P----------ASKTKDDQSLGEFFRRRVGDEVVENLIEPL-LSGIYAGDI--DKLS  185 (470)
T ss_dssp             ------CCSHH--HHHHHHS---C----------CCSSSSCCBHHHHHHHHSCHHHHHHTHHHH-HHHTTCSCT--TTBB
T ss_pred             cCcCCHHHHHH--HhcCccc---C----------CCCCCCCcCHHHHHHHhcCHHHHHHhccch-hcEEecCCH--HHhh
Confidence            11111111111  0011100   0          012345689999998743333333333221 111122222  2345


Q ss_pred             hhhHHHHHHHHHhhhcccc-----------------CCCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEec
Q 014883          247 TRDGINRLALYNSSIGRFQ-----------------NALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQ  309 (416)
Q Consensus       247 ~~~~~~~~~~~~~s~~~~g-----------------~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~  309 (416)
                      +...+..+..+....+...                 ...+.+.+++||++.|+++|++.+..  ++|+++++|++|..+ 
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~--~~i~~~~~V~~i~~~-  262 (470)
T 3i6d_A          186 LMSTFPQFYQTEQKHRSLILGMKKTRPQGSGQQLTAKKQGQFQTLSTGLQTLVEEIEKQLKL--TKVYKGTKVTKLSHS-  262 (470)
T ss_dssp             HHHHCGGGCC-------------------------------EEEETTCTHHHHHHHHHTCCS--EEEECSCCEEEEEEC-
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHhhccccccccccccCCceEEEeCChHHHHHHHHHHhcCC--CEEEeCCceEEEEEc-
Confidence            4333222111111000000                 00124778999999999988764322  799999999999986 


Q ss_pred             CCCcEEEEEeCCCcEEEcCEEEEC-CCCCCCCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCCCCCCC-CceEEEe
Q 014883          310 NSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL-SNFLVIF  387 (416)
Q Consensus       310 ~~g~~~gV~l~~G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~~~~~-~~~~~~~  387 (416)
                       ++. +.|++.+|++++||+||++ |...+.++..  ++++..    ..++..++.+.+..+.|++|+-+.+ ...-+++
T Consensus       263 -~~~-~~v~~~~g~~~~ad~vi~a~p~~~~~~l~~--~~~~~~----~~~~~~~~~~~~v~l~~~~~~~~~~~~~~g~l~  334 (470)
T 3i6d_A          263 -GSC-YSLELDNGVTLDADSVIVTAPHKAAAGMLS--ELPAIS----HLKNMHSTSVANVALGFPEGSVQMEHEGTGFVI  334 (470)
T ss_dssp             -SSS-EEEEESSSCEEEESEEEECSCHHHHHHHTT--TSTTHH----HHHTCEEEEEEEEEEEESSTTCCCSSCSSEEEE
T ss_pred             -CCe-EEEEECCCCEEECCEEEECCCHHHHHHHcC--CchhhH----HHhcCCCCceEEEEEEECchhcCCCCCCeEEEc
Confidence             444 5788889989999999954 5443333321  223322    2234568889999999999985433 3334444


Q ss_pred             C
Q 014883          388 P  388 (416)
Q Consensus       388 p  388 (416)
                      |
T Consensus       335 ~  335 (470)
T 3i6d_A          335 S  335 (470)
T ss_dssp             C
T ss_pred             c
Confidence            5

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=99.92  E-value=8.1e-24  Score=214.09  Aligned_cols=296  Identities=12%  Similarity=0.083  Sum_probs=176.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCccccccccccccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (416)
                      ...+||||||||++||+||+.|+++|++|+|||+++++||+++|++.+|                               
T Consensus        11 ~~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g-------------------------------   59 (504)
T 1sez_A           11 SSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDG-------------------------------   59 (504)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEETT-------------------------------
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCC-------------------------------
Confidence            3468999999999999999999999999999999999999999976532                               


Q ss_pred             cccCCCCceEeeCCCCeEEee-CchHHHHHHhcCccccccccccc-ceeeeccCCceeecCCChhhhhhcCCCChHHHHH
Q 014883          100 LLSQHPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKSID-ATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQ  177 (416)
Q Consensus       100 ~~~~~~~~~~~dl~Gp~~~~~-~~~~~~~l~~~g~~~~~~f~~~~-~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~  177 (416)
                              +.+|. |++++.. ...+.+++.++|+...+.|.... ..+++ .+|+.+.+|.+...++....++..++..
T Consensus        60 --------~~~~~-g~~~~~~~~~~~~~~~~~lgl~~~~~~~~~~~~~~~~-~~g~~~~~p~~~~~~~~~~~~~~~~~~~  129 (504)
T 1sez_A           60 --------LIWDE-GANTMTESEGDVTFLIDSLGLREKQQFPLSQNKRYIA-RNGTPVLLPSNPIDLIKSNFLSTGSKLQ  129 (504)
T ss_dssp             --------EEEES-SCCCBCCCSHHHHHHHHHTTCGGGEECCSSCCCEEEE-SSSSEEECCSSHHHHHHSSSSCHHHHHH
T ss_pred             --------eEEec-CCcccccCcHHHHHHHHHcCCcccceeccCCCceEEE-ECCeEEECCCCHHHHhccccCCHHHHHH
Confidence                    44677 4777643 34788899999998766664322 23344 3788888888766666555555544433


Q ss_pred             HHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHH-HHHhccCCchhhhhhhchhhHHHHHHH
Q 014883          178 LMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLY-AIAMADYDQEVSEYVLKTRDGINRLAL  256 (416)
Q Consensus       178 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~  256 (416)
                      +.  ......... ..     .  .....+.|+.+|+++..-++.++.++.. ....  +..++  .++|+...+..+..
T Consensus       130 ~~--~~~~~~~~~-~~-----~--~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~s~~~~~~~~~~  195 (504)
T 1sez_A          130 ML--LEPILWKNK-KL-----S--QVSDSHESVSGFFQRHFGKEVVDYLIDPFVAGT--CGGDP--DSLSMHHSFPELWN  195 (504)
T ss_dssp             HH--THHHHC------------------CCCBHHHHHHHHHCHHHHHTTHHHHHHHH--HSCCG--GGSBHHHHCHHHHH
T ss_pred             Hh--HhhhccCcc-cc-----c--ccCCCCccHHHHHHHHcCHHHHHHHHHHHHccc--cCCCh--HHhhHHHHhHHHHH
Confidence            21  111110000 00     0  0123458999999865333333333321 1111  22222  24555443322221


Q ss_pred             HHhh------------hccccC-------------CCccEEeecCCcchHHHHHHHHHHhcC-cEEEcCCceeEEEEecC
Q 014883          257 YNSS------------IGRFQN-------------ALGALIYPIYGQGELPQAFCRRAAVKG-CLYVLRMPVISLLTDQN  310 (416)
Q Consensus       257 ~~~s------------~~~~g~-------------~~~~~~~p~gG~~~l~~al~r~~~~~G-g~i~l~~~V~~I~~~~~  310 (416)
                      +...            +...+.             ....+++++||+++|+++|++   .+| ++|++|++|++|..+. 
T Consensus       196 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~l~~~l~~---~l~~~~i~~~~~V~~I~~~~-  271 (504)
T 1sez_A          196 LEKRFGSVILGAIRSKLSPKNEKKQGPPKTSANKKRQRGSFSFLGGMQTLTDAICK---DLREDELRLNSRVLELSCSC-  271 (504)
T ss_dssp             HHHHTSCHHHHHHHHTTC----------CCCSCCSTTCSCBEETTCTHHHHHHHHT---TSCTTTEETTCCEEEEEEEC-
T ss_pred             HHHHhCCHHHHHHHhhhcccccccccccchhhccccCCceEeeCcHHHHHHHHHHh---hcccceEEcCCeEEEEEecC-
Confidence            1110            000000             001256899999999998875   456 8999999999999872 


Q ss_pred             CCc----EEEEEeC--CC---cEEEcCEEEEC-CCCCCCCCCC-CchhhhhhhhhhccccCCcceEEEEEEEecCCCC
Q 014883          311 SGS----YKGVRLA--SG---QDILSHKLVLD-PSFTVPGSLA-SSHQQLQESFQAFSLSDNKGKVARGICITRSSLK  377 (416)
Q Consensus       311 ~g~----~~gV~l~--~G---~~i~Ad~VI~~-p~~~~~~l~~-~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~~  377 (416)
                      ++.    .+.|++.  +|   ++++||+||++ |...+.++.. ...+++++..   .++..+..+.+..+.|++++-
T Consensus       272 ~~~~~~~~~~v~~~~~~g~~~~~~~ad~VI~a~p~~~l~~ll~~~~~~~~~~~~---l~~~~~~~~~~v~l~~~~~~~  346 (504)
T 1sez_A          272 TEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMKIAKRGNPFLLNF---IPEVDYVPLSVVITTFKRENV  346 (504)
T ss_dssp             SSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHHHTSEEESSSSBCCCTT---SCCCCEEEEEEEEEEEEGGGB
T ss_pred             CCCcccceEEEEEcCCCCccceeEECCEEEECCCHHHHHHHhhcccCCcccHHH---HhcCCCCceEEEEEEEchhhc
Confidence            331    2456554  45   57899999965 4433344431 0012232221   233456678899999998863

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=99.91  E-value=8.6e-24  Score=214.15  Aligned_cols=293  Identities=15%  Similarity=0.077  Sum_probs=163.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhC-CCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCcccccccccccccc
Q 014883           22 AFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~-G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (416)
                      .+||||||||++||+||++|+++ |++|+||||++++||+++|+...                                 
T Consensus        10 ~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG~~~T~~~~---------------------------------   56 (513)
T 4gde_A           10 SVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTP---------------------------------   56 (513)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCCGGGCEEECT---------------------------------
T ss_pred             CCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCcCCeeeEEec---------------------------------
Confidence            58999999999999999999984 99999999999999999985321                                 


Q ss_pred             ccCCCCceEeeCCCCeEEeeCc-hHHHHHHhcCcccccccccccc-eeeeccCCceeecCCChhhhhhcCCCChHHHHHH
Q 014883          101 LSQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDA-TFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (416)
Q Consensus       101 ~~~~~~~~~~dl~Gp~~~~~~~-~~~~~l~~~g~~~~~~f~~~~~-~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l  178 (416)
                           .+|.+|. ||++++... .+.+++.+.+... .+|...++ .+++. +|+.+++|...  .+  ..+........
T Consensus        57 -----~G~~~D~-G~h~~~~~~~~v~~l~~e~~~~~-~~~~~~~~~~~i~~-~g~~~~~p~~~--~~--~~~~~~~~~~~  124 (513)
T 4gde_A           57 -----EGFLYDV-GGHVIFSHYKYFDDCLDEALPKE-DDWYTHQRISYVRC-QGQWVPYPFQN--NI--SMLPKEEQVKC  124 (513)
T ss_dssp             -----TSCEEES-SCCCCCCCBHHHHHHHHHHSCSG-GGEEEEECCEEEEE-TTEEEESSGGG--GG--GGSCHHHHHHH
T ss_pred             -----CCEEEEe-CceEecCCCHHHHHHHHHhCCcc-ceeEEecCceEEEE-CCeEeecchhh--hh--hhcchhhHHHH
Confidence                 2356788 588876554 6677777765432 23333332 23443 78888887531  11  12233333222


Q ss_pred             -HHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhHHHH-HH-HHHHhccCCchhhhhhhchhhHHH---
Q 014883          179 -MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSI-VL-YAIAMADYDQEVSEYVLKTRDGIN---  252 (416)
Q Consensus       179 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~s~~~~~~---  252 (416)
                       ..++.......            .......++.+|+.+.. .+.+.+. +. +......  .++  .++++.+...   
T Consensus       125 ~~~~~~~~~~~~------------~~~~~~~s~~~~~~~~~-g~~l~~~~~~~~~~~~~~--~~~--~~ls~~~~~~~~~  187 (513)
T 4gde_A          125 IDGMIDAALEAR------------VANTKPKTFDEWIVRMM-GTGIADLFMRPYNFKVWA--VPT--TKMQCAWLGERVA  187 (513)
T ss_dssp             HHHHHHHHHHHH------------TCCSCCCSHHHHHHHHH-HHHHHHHTHHHHHHHHHS--SCG--GGBCSGGGCSSCC
T ss_pred             HHHHHHHHHhhh------------cccccccCHHHHHHHhh-hhhhhhhhcchhhhhhcc--CCh--HHhhHHHHHHhhc
Confidence             22222211110            11223467888876421 1122221 11 1111111  111  1233222111   


Q ss_pred             ------HHHHHHhh--hccccCCCccEE-eecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCc
Q 014883          253 ------RLALYNSS--IGRFQNALGALI-YPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ  323 (416)
Q Consensus       253 ------~~~~~~~s--~~~~g~~~~~~~-~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~  323 (416)
                            .+...+..  ...++.. ..+. .++||+++|+++|++.+...|++|++|++|++|..+  ++   .|++.+|+
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gG~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~--~~---~v~~~~G~  261 (513)
T 4gde_A          188 APNLKAVTTNVILGKTAGNWGPN-ATFRFPARGGTGGIWIAVANTLPKEKTRFGEKGKVTKVNAN--NK---TVTLQDGT  261 (513)
T ss_dssp             CCCHHHHHHHHHHTCCCCSCBTT-BEEEEESSSHHHHHHHHHHHTSCGGGEEESGGGCEEEEETT--TT---EEEETTSC
T ss_pred             ccchhhhhhhhhhcccccccccc-cceeecccCCHHHHHHHHHHHHHhcCeeeecceEEEEEEcc--CC---EEEEcCCC
Confidence                  11111110  0111111 1233 458999999999999888999999999999999875  54   35578999


Q ss_pred             EEEcCEEEEC-CCCCCCCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCCCCC-CCCceEEEeC
Q 014883          324 DILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP-DLSNFLVIFP  388 (416)
Q Consensus       324 ~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~~~-~~~~~~~~~p  388 (416)
                      ++.||+||++ |...+.++..  ++++....    ...++..+....+.++.+... ..+...+.+|
T Consensus       262 ~~~ad~vI~t~P~~~l~~~l~--~~~~~~~~----~~l~y~~~~~v~l~~~~~~~~~~~~~~~~y~~  322 (513)
T 4gde_A          262 TIGYKKLVSTMAVDFLAEAMN--DQELVGLT----KQLFYSSTHVIGVGVRGSRPERIGDKCWLYFP  322 (513)
T ss_dssp             EEEEEEEEECSCHHHHHHHTT--CHHHHHHH----TTCCEEEEEEEEEEEESSCCTTTTTCCEEECC
T ss_pred             EEECCEEEECCCHHHHHHhcC--chhhHhhh----hcccCCceEEEEEEEeccccccccccceeecc
Confidence            9999999965 4333333321  12222222    223455566555666665432 2233444444

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=99.90  E-value=6.4e-23  Score=208.15  Aligned_cols=282  Identities=15%  Similarity=0.134  Sum_probs=161.2

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCC-CeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCcccccccccccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G-~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (416)
                      +..+||||||||++||+||+.|+++| ++|+|||+++++||+++|++..                               
T Consensus         6 ~~~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGGr~~t~~~~-------------------------------   54 (516)
T 1rsg_A            6 PAKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGY-------------------------------   54 (516)
T ss_dssp             CEEEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBTTCCEEECG-------------------------------
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCceeeeecC-------------------------------
Confidence            45689999999999999999999999 9999999999999999997641                               


Q ss_pred             ccccCCCCceEeeCCCCeEEee--CchHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhhcCCCChH-HH
Q 014883           99 RLLSQHPRNFNLDVSGPRVLFC--ADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLM-EK  175 (416)
Q Consensus        99 ~~~~~~~~~~~~dl~Gp~~~~~--~~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~-~k  175 (416)
                             .++.+|+ |++++..  ...+.+++.++++....      ..+.+. +|....++.+...+......... -.
T Consensus        55 -------~G~~~D~-G~~~~~~~~~~~~~~~~~~lg~~~~~------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (516)
T 1rsg_A           55 -------QGRKYDI-GASWHHDTLTNPLFLEEAQLSLNDGR------TRFVFD-DDNFIYIDEERGRVDHDKELLLEIVD  119 (516)
T ss_dssp             -------GGCEEES-SCCEECCTTTCHHHHHHHHHHHHHCC------CCEECC-CCCCEEEETTTEECTTCTTTCHHHHH
T ss_pred             -------CCcEEec-CCeEEecCCCChHHHHHHHhCCCCcc------eeEEEC-CCCEEEEcCCCccccccHHHHHHHHH
Confidence                   1244788 5888753  34566666665542210      011111 23322222211000000000000 01


Q ss_pred             HHHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhc------CCChhHHHHHHHHHHhc-c-CCchhhhhhhch
Q 014883          176 NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKM------KLPHKIKSIVLYAIAMA-D-YDQEVSEYVLKT  247 (416)
Q Consensus       176 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~------~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~s~  247 (416)
                      ..+.++...   ....          .....+.++.+|+.++      .+++....++...+... . +..+.  .++|+
T Consensus       120 ~~~~~~~~~---~~~~----------~~~~~d~s~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~--~~~s~  184 (516)
T 1rsg_A          120 NEMSKFAEL---EFHQ----------HLGVSDCSFFQLVMKYLLQRRQFLTNDQIRYLPQLCRYLELWHGLDW--KLLSA  184 (516)
T ss_dssp             HHHHHHHHH---HC-----------------CCBHHHHHHHHHHHHGGGSCHHHHHHHHHHHGGGHHHHTBCT--TTSBH
T ss_pred             HHHHHHHHH---Hhhh----------ccCCCCCCHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHhCCCh--HHCCh
Confidence            112222221   1100          0122457788877642      12222222111111000 0 00000  12332


Q ss_pred             hhHHHHHHHHHhhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEc
Q 014883          248 RDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILS  327 (416)
Q Consensus       248 ~~~~~~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~A  327 (416)
                      ..       .+   ....   +...+++| ++.|+++|++.+  .+++|++|++|++|..+  ++..+.|++.+|++++|
T Consensus       185 ~~-------~~---~~~~---~~~~~~~g-~~~l~~~l~~~l--~~~~i~~~~~V~~I~~~--~~~~v~v~~~~g~~~~a  246 (516)
T 1rsg_A          185 KD-------TY---FGHQ---GRNAFALN-YDSVVQRIAQSF--PQNWLKLSCEVKSITRE--PSKNVTVNCEDGTVYNA  246 (516)
T ss_dssp             HH-------HC---CCCS---SCCEEESC-HHHHHHHHHTTS--CGGGEETTCCEEEEEEC--TTSCEEEEETTSCEEEE
T ss_pred             HH-------HH---hhcc---CcchhhhC-HHHHHHHHHHhC--CCCEEEECCEEEEEEEc--CCCeEEEEECCCcEEEC
Confidence            11       11   0111   12346777 999988886533  23689999999999985  33336888889989999


Q ss_pred             CEEEEC-CCCCCCCC---------CCCchhhhhhhhhhccccCCcceEEEEEEEecCCCCCCC
Q 014883          328 HKLVLD-PSFTVPGS---------LASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL  380 (416)
Q Consensus       328 d~VI~~-p~~~~~~l---------~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~~~~~  380 (416)
                      |+||++ |...+...         .+.+.|+||..+.+..++..++.+.|.++.|++||=++.
T Consensus       247 d~VI~t~p~~~l~~~~~~~~~~~~~i~f~P~Lp~~~~~ai~~~~~~~~~Kv~l~f~~~fW~~~  309 (516)
T 1rsg_A          247 DYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECCWSNE  309 (516)
T ss_dssp             EEEEECCCHHHHHGGGSSCSCSTTCCEEESCCCHHHHHHTTSSCCCCCEEEEEEESSCCSCCS
T ss_pred             CEEEECCCHHHhhhccccccccccceEecCCCCHHHHHHHHhCCCCcceEEEEEeCCCCCCCC
Confidence            999965 43332210         145788999988888888899999999999999985443

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.87  E-value=3.1e-21  Score=191.17  Aligned_cols=287  Identities=14%  Similarity=0.081  Sum_probs=170.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCcccccccccccccccc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS  102 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (416)
                      +||||||||++||+||+.|+++|++|+|||+++++||++.+.+..-                                  
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~c----------------------------------   47 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSRESRN----------------------------------   47 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEEECSS----------------------------------
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCccCeecceeccC----------------------------------
Confidence            7999999999999999999999999999999999999999865420                                  


Q ss_pred             CCCCceEeeCCCCeEEee--CchHHHHHHhcCcccccccccccceeee-ccCCceeec-CCChhhhhhcCCCChHHHHHH
Q 014883          103 QHPRNFNLDVSGPRVLFC--ADHAVDLMLKSGASHYLEFKSIDATFML-DADAKLCSV-PDSRAAIFKDKSLGLMEKNQL  178 (416)
Q Consensus       103 ~~~~~~~~dl~Gp~~~~~--~~~~~~~l~~~g~~~~~~f~~~~~~~~~-~~~g~~~~~-p~~~~~~~~~~~l~~~~k~~l  178 (416)
                        ...+.++++ ++++..  ...+.+++.++|+.........  ...+ ..++..... |... ...      ..-+..+
T Consensus        48 --ipg~~~~~g-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~------~~~~~~~  115 (431)
T 3k7m_X           48 --VPGLRVEIG-GAYLHRKHHPRLAAELDRYGIPTAAASEFT--SFRHRLGPTAVDQAFPIPG-SEA------VAVEAAT  115 (431)
T ss_dssp             --STTCEEESS-CCCBCTTTCHHHHHHHHHHTCCEEECCCCC--EECCBSCTTCCSSSSCCCG-GGH------HHHHHHH
T ss_pred             --CCCceEecC-CeeeCCCCcHHHHHHHHHhCCeeeecCCCC--cEEEEecCCeecCCCCCCH-HHH------HHHHHHH
Confidence              012336663 666533  3466777777777543222111  1111 112222111 1100 000      0011222


Q ss_pred             HHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHH-hccCCchhhhhhhchhhHHHHHHHH
Q 014883          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIA-MADYDQEVSEYVLKTRDGINRLALY  257 (416)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~~~  257 (416)
                      .++......+....++..   ....++. .++.+|+++.+.++..+.++...+. ...  .+.  .++|....+.    +
T Consensus       116 ~~l~~~~~~~~~~~~~~~---~~~~~~d-~s~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~s~~~~~~----~  183 (431)
T 3k7m_X          116 YTLLRDAHRIDLEKGLEN---QDLEDLD-IPLNEYVDKLDLPPVSRQFLLAWAWNMLG--QPA--DQASALWMLQ----L  183 (431)
T ss_dssp             HHHHHHHTTCCTTTCTTS---SSCGGGC-SBHHHHHHHHTCCHHHHHHHHHHHHHHHS--SCT--TTSBHHHHHH----H
T ss_pred             HHHHHHHHhcCCCCCccC---cchhhhc-CCHHHHHHhcCCCHHHHHHHHHHHHHhcC--CCh--hhhhHHHHHH----H
Confidence            333333332221111110   0112333 8999999998888877765432211 111  111  1345443322    2


Q ss_pred             Hhhhcc-cc--CCCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC-
Q 014883          258 NSSIGR-FQ--NALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-  333 (416)
Q Consensus       258 ~~s~~~-~g--~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~-  333 (416)
                      +...+. +.  -..... ++.+|++.+.++++   +..| +|++|++|++|..+  ++. +.|++.+|++++||+||+. 
T Consensus       184 ~~~~~~~~~~~~~~~~~-~~~~g~~~l~~~~~---~~~g-~i~~~~~V~~i~~~--~~~-v~v~~~~g~~~~ad~vi~a~  255 (431)
T 3k7m_X          184 VAAHHYSILGVVLSLDE-VFSNGSADLVDAMS---QEIP-EIRLQTVVTGIDQS--GDV-VNVTVKDGHAFQAHSVIVAT  255 (431)
T ss_dssp             HHHTTSCHHHHHHTCCE-EETTCTHHHHHHHH---TTCS-CEESSCCEEEEECS--SSS-EEEEETTSCCEEEEEEEECS
T ss_pred             HHhcCCccceeecchhh-hcCCcHHHHHHHHH---hhCC-ceEeCCEEEEEEEc--CCe-EEEEECCCCEEEeCEEEEec
Confidence            221110 00  000113 78999999998764   4567 99999999999876  444 4688888988999999954 


Q ss_pred             CCCCCCCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCCCC
Q 014883          334 PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK  377 (416)
Q Consensus       334 p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~~  377 (416)
                      |...+..+  .+.|+||..+....+...++..+|..+.+++++.
T Consensus       256 ~~~~l~~i--~~~p~l~~~~~~~~~~~~~~~~~kv~~~~~~~~~  297 (431)
T 3k7m_X          256 PMNTWRRI--VFTPALPERRRSVIEEGHGGQGLKILIHVRGAEA  297 (431)
T ss_dssp             CGGGGGGS--EEESCCCHHHHHHHHHCCCCCEEEEEEEEESCCT
T ss_pred             CcchHhhe--eeCCCCCHHHHHHHHhCCCcceEEEEEEECCCCc
Confidence            44444443  4678888877766666678889999999999984

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=99.87  E-value=2.7e-21  Score=194.02  Aligned_cols=288  Identities=11%  Similarity=0.090  Sum_probs=166.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC-eEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCccccccccccccc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~-~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (416)
                      ..+||+|||||++||++|..|+++|+ +|+|+|+++++||++++....+                               
T Consensus         3 ~~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg~~~~~~~~~-------------------------------   51 (472)
T 1b37_A            3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAG-------------------------------   51 (472)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEEEETT-------------------------------
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCCCceeecccCC-------------------------------
Confidence            45899999999999999999999999 8999999999999999976432                               


Q ss_pred             cccCCCCceEeeCCCCeEEee-----CchHHHHHHh-cCcccccc-cccccceeeeccCCceeecCCChhhhhhcCCCCh
Q 014883          100 LLSQHPRNFNLDVSGPRVLFC-----ADHAVDLMLK-SGASHYLE-FKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGL  172 (416)
Q Consensus       100 ~~~~~~~~~~~dl~Gp~~~~~-----~~~~~~~l~~-~g~~~~~~-f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~  172 (416)
                              +.+|+ |++++..     ...+.+++.+ +|+..+.. +... ..+++..+|+.++.+.. .+.+.      
T Consensus        52 --------~~~d~-g~~~~~~~~~~~~~~~~~~~~~~lgl~~~~~~~~~~-~~~~~~~~g~~~~~~~~-~~~~~------  114 (472)
T 1b37_A           52 --------INVEL-GANWVEGVNGGKMNPIWPIVNSTLKLRNFRSDFDYL-AQNVYKEDGGVYDEDYV-QKRIE------  114 (472)
T ss_dssp             --------EEEES-SCCEEEEESSSSCCTHHHHHHTTSCCCEEECCCTTG-GGCEECSSSSBCCHHHH-HHHHH------
T ss_pred             --------cEEee-CCeEEeccCCCCCCHHHHHHHhhcCCceeeccCccc-cceeEcCCCCCCCHHHH-HHHHH------
Confidence                    34777 4787752     2367888888 78866432 2211 11233335554322110 00000      


Q ss_pred             HHHHHHHHHHHHHHhhcCCCccccccccccccccCCcHHH--HHHhcC---CChhHHHHHHHHHHhccCCchhhhhhhch
Q 014883          173 MEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAE--FLTKMK---LPHKIKSIVLYAIAMADYDQEVSEYVLKT  247 (416)
Q Consensus       173 ~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~--~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  247 (416)
                       ....+.++...+.....           ..++.+.++.+  ++.+..   ....+..++........+..++  ...|+
T Consensus       115 -~~~~~~~~~~~~~~~~~-----------~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~  180 (472)
T 1b37_A          115 -LADSVEEMGEKLSATLH-----------ASGRDDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEPP--RVTSL  180 (472)
T ss_dssp             -HHHHHHHHHHHHHHTSC-----------TTCTTCCBHHHHHHHHHTSSSSCCSHHHHHHHHHHTHHHHSSCG--GGBBS
T ss_pred             -HHHHHHHHHHHHHHhhc-----------cccchhhhHHHHHHHhhhcccccccHHHHHHHHHHHhhhhcccc--cccch
Confidence             00112222221111100           01223445443  554432   1111222222111000001111  11232


Q ss_pred             hhHHHHHHHHHhhhccccCCCccEEeecCCcchHHHHHHHHHHhc--------CcEEEcCCceeEEEEecCCCcEEEEEe
Q 014883          248 RDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVK--------GCLYVLRMPVISLLTDQNSGSYKGVRL  319 (416)
Q Consensus       248 ~~~~~~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~--------Gg~i~l~~~V~~I~~~~~~g~~~gV~l  319 (416)
                      ...+. ...|.    .++. ...+..++||++.|+++|++.+...        |++|+++++|++|..+  ++. +.|++
T Consensus       181 ~~~~~-~~~~~----~~~~-~~~~~~~~gG~~~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~--~~~-v~v~~  251 (472)
T 1b37_A          181 QNTVP-LATFS----DFGD-DVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYS--PGG-VTVKT  251 (472)
T ss_dssp             TTTSS-CHHHH----HHCS-EEEEECCTTCTTHHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEEC--SSC-EEEEE
T ss_pred             hhccc-ccccc----ccCC-ceeeeecCCcHHHHHHHHHHhccccccccccccccEEEcCCEEEEEEEc--CCc-EEEEE
Confidence            11110 00111    1121 0113345899999999998765443        7899999999999986  444 45888


Q ss_pred             CCCcEEEcCEEEEC-CCCCCCCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCCCCCC
Q 014883          320 ASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD  379 (416)
Q Consensus       320 ~~G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~~~~  379 (416)
                      .+|++++||+||++ |...+..+.+.+.|+||+.+.+..++..++.+.|.++.|++||-++
T Consensus       252 ~~g~~~~ad~vI~a~~~~~l~~~~~~~~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~w~~  312 (472)
T 1b37_A          252 EDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFDMAVYTKIFLKFPRKFWPE  312 (472)
T ss_dssp             TTSCEEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHHHSEEECEEEEEEECSSCCSCC
T ss_pred             CCCCEEEcCEEEEecCHHHhccCCeeECCCCCHHHHHHHHhcCCcceeEEEEECCCcCCCC
Confidence            89999999999965 4444344434567888887666666667899999999999998554

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=99.87  E-value=1.5e-21  Score=196.20  Aligned_cols=315  Identities=13%  Similarity=0.131  Sum_probs=175.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCC-CeEEEEccCCCCCCccccc-ChhhhHhhhhcCCCCCCCCCCCcccccccccccc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGSHFSSL-SIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G-~~V~vlE~~~~~GG~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (416)
                      ..+||+|||||++||+||+.|+++| ++|+|+|+++++||+++++ ..+                               
T Consensus         8 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~GG~~~~~~~~~-------------------------------   56 (484)
T 4dsg_A            8 LTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRSFLDEN-------------------------------   56 (484)
T ss_dssp             CSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSSGGGCEEECTT-------------------------------
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCCCeeeeeecCC-------------------------------
Confidence            4689999999999999999999999 8999999999999999985 332                               


Q ss_pred             ccccCCCCceEeeCCCCeEEeeCc-hHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhhcCCCChHHHHH
Q 014883           99 RLLSQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQ  177 (416)
Q Consensus        99 ~~~~~~~~~~~~dl~Gp~~~~~~~-~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~  177 (416)
                              ++.+|.+ +++++... .+.+++.+.. .++.....  ..+++. +|+.+++|...  .+  ..++..++..
T Consensus        57 --------g~~~~~g-~~~~~~~~~~~~~l~~~~~-~~~~~~~~--~~~~~~-~g~~~~~P~~~--~~--~~l~~~~~~~  119 (484)
T 4dsg_A           57 --------GFTWDLG-GHVIFSHYQYFDDVMDWAV-QGWNVLQR--ESWVWV-RGRWVPYPFQN--NI--HRLPEQDRKR  119 (484)
T ss_dssp             --------SCEEESS-CCCBCCSBHHHHHHHHHHC-SCEEEEEC--CCEEEE-TTEEEESSGGG--CG--GGSCHHHHHH
T ss_pred             --------CcEEeeC-CcccccChHHHHHHHHHHh-hhhhhccC--ceEEEE-CCEEEEeCccc--hh--hhCCHHHHHH
Confidence                    3446774 66664444 4556666653 33333222  123333 78888888321  11  1234433332


Q ss_pred             -HHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhHHH-HHH-HHHHhccCCchhhhhhhchhhHH---
Q 014883          178 -LMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS-IVL-YAIAMADYDQEVSEYVLKTRDGI---  251 (416)
Q Consensus       178 -l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~---  251 (416)
                       +..++.. +..             .....+.++.+|+.+. +.+.+.+ ++. +....  |..++  .++|+.+.+   
T Consensus       120 ~~~~ll~~-~~~-------------~~~~~~~s~~e~~~~~-~g~~~~~~~~~p~~~~v--~~~~~--~~ls~~~~~~r~  180 (484)
T 4dsg_A          120 CLDELVRS-HAR-------------TYTEPPNNFEESFTRQ-FGEGIADIFMRPYNFKV--WAVPP--CLMSTEWVEERV  180 (484)
T ss_dssp             HHHHHHHH-HHC-------------CCSSCCSSHHHHHHHH-HHHHHCCCCCHHHHHHH--HSSCG--GGBCSSSCTTTS
T ss_pred             HHHHHHHH-Hhc-------------cCCCCCCCHHHHHHHH-hHHHHHHHHHHHHHhhh--cCCCH--HHhcHHHHhccc
Confidence             2233322 100             1123467899998753 1111111 111 11011  11121  234433211   


Q ss_pred             -----HH-HHHHHhhhcc--ccCCCccEEeec-CCcchHHHHHHHHHHhcCcEEEcC--CceeEEEEecCCCcEEEEEeC
Q 014883          252 -----NR-LALYNSSIGR--FQNALGALIYPI-YGQGELPQAFCRRAAVKGCLYVLR--MPVISLLTDQNSGSYKGVRLA  320 (416)
Q Consensus       252 -----~~-~~~~~~s~~~--~g~~~~~~~~p~-gG~~~l~~al~r~~~~~Gg~i~l~--~~V~~I~~~~~~g~~~gV~l~  320 (416)
                           .. +...+.....  ++ ..+.+.||. ||+++|+++|++.+..  .+|+++  ++|++|..+  ++   +|++.
T Consensus       181 ~~~~l~~~~~~~~~~~~~~~~~-~~~~f~yp~~gG~~~l~~~la~~l~~--~~i~~~~~~~V~~I~~~--~~---~v~~~  252 (484)
T 4dsg_A          181 APVDLERIRRNIQENRDDLGWG-PNATFRFPQRGGTGIIYQAIKEKLPS--EKLTFNSGFQAIAIDAD--AK---TITFS  252 (484)
T ss_dssp             CCCCHHHHHHHHHHTCCCCCCS-TTSEEEEESSSCTHHHHHHHHHHSCG--GGEEECGGGCEEEEETT--TT---EEEET
T ss_pred             cCCCHHHHHHHHhhcccccCCC-ccceEEeecCCCHHHHHHHHHhhhhh--CeEEECCCceeEEEEec--CC---EEEEC
Confidence                 11 1111111000  11 112367775 8999999999764422  289999  569999875  45   35568


Q ss_pred             CCcEEEcCEEEEC-CCCCCCCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCCCCCC-CCceEEEeCCCCCCCCCCC
Q 014883          321 SGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD-LSNFLVIFPPRSLFPEQVT  398 (416)
Q Consensus       321 ~G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~~~~-~~~~~~~~pp~~~~~~~~~  398 (416)
                      +|+++.||+||++ |...+.++..+..+++++......+...+..+.+..+.++++..++ +...-+.+|...     .+
T Consensus       253 ~G~~~~ad~VI~a~p~~~~~~ll~~~~~~~~~~~~~~l~~l~y~s~~~v~l~~~~~~~~~~~~~~~i~vp~~~-----~~  327 (484)
T 4dsg_A          253 NGEVVSYDYLISTVPFDNLLRMTKGTGFKGYDEWPAIADKMVYSSTNVIGIGVKGTPPPHLKTACWLYFPEDT-----SP  327 (484)
T ss_dssp             TSCEEECSEEEECSCHHHHHHHEECSSCTTGGGHHHHHHHCCEEEEEEEEEEEESCCCGGGTTCCEEECCSTT-----CS
T ss_pred             CCCEEECCEEEECCCHHHHHHHhhccCCCCCHHHHHHHhCCCcCceEEEEEEEcCCCcccCCCCeEEEEEcCC-----Ce
Confidence            8999999999964 4433333322212234554444455567888999999999885432 333444556332     12


Q ss_pred             eEEEEEecC-CCccCCCC
Q 014883          399 SIRVLQLGG-NLAVCPLG  415 (416)
Q Consensus       399 ~v~~~~~~~-~~~~~p~G  415 (416)
                      ..++..++. +...+|+|
T Consensus       328 ~~ri~~~s~~~p~~ap~g  345 (484)
T 4dsg_A          328 FYRATVFSNYSKYNVPEG  345 (484)
T ss_dssp             CSEEECGGGTCGGGSCTT
T ss_pred             EEEEEeecCCCcccCCCC
Confidence            334444333 24556665

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=99.86  E-value=3.8e-21  Score=194.19  Aligned_cols=283  Identities=12%  Similarity=0.086  Sum_probs=166.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCcccccccccccccc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (416)
                      ..+||||||||++||+||..|+++|++|+|||+++++||++.++....                                
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~~~~~~~~--------------------------------   79 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEE--------------------------------   79 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEETT--------------------------------
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCceeeeccCC--------------------------------
Confidence            357999999999999999999999999999999999999998875311                                


Q ss_pred             ccCCCCceEeeCCCCeEEeeC-chHHHHHHhcCccccccccccc-ceeeeccCCceeecCC---ChhhhhhcCCCChH--
Q 014883          101 LSQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSID-ATFMLDADAKLCSVPD---SRAAIFKDKSLGLM--  173 (416)
Q Consensus       101 ~~~~~~~~~~dl~Gp~~~~~~-~~~~~~l~~~g~~~~~~f~~~~-~~~~~~~~g~~~~~p~---~~~~~~~~~~l~~~--  173 (416)
                           ..+.+|+ |++++... ..+.+++.++|+... .+...+ ..++.. +|.....+.   .. ..+.. .+.+.  
T Consensus        80 -----~~~~~~~-g~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~-~g~~~~~~~~~~~~-~~~~~-~~~~~~~  149 (498)
T 2iid_A           80 -----AGWYANL-GPMRLPEKHRIVREYIRKFDLRLN-EFSQENDNAWYFI-KNIRKKVGEVKKDP-GLLKY-PVKPSEA  149 (498)
T ss_dssp             -----TTEEEES-SCCCEETTCHHHHHHHHHTTCCEE-EECSCCTTSEEEE-TTEEEEHHHHHHCG-GGGCC-CCCGGGT
T ss_pred             -----CCchhhc-CcccccchHHHHHHHHHHhCCCce-eecccCCccEEEe-CCeeecccccccCc-ccccc-CCCcccc
Confidence                 1344666 46666443 356677888887532 222111 112111 333221110   00 01110 11111  


Q ss_pred             -----HH--HHHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcC-CChhHHHHHHHHHHhc-cCCchhhhhh
Q 014883          174 -----EK--NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMK-LPHKIKSIVLYAIAMA-DYDQEVSEYV  244 (416)
Q Consensus       174 -----~k--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~  244 (416)
                           +.  ..+.++...+....        ......++.+.++.+|+.+.+ +++..+.++...+... .+.       
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------  214 (498)
T 2iid_A          150 GKSAGQLYEESLGKVVEELKRTN--------CSYILNKYDTYSTKEYLIKEGDLSPGAVDMIGDLLNEDSGYY-------  214 (498)
T ss_dssp             TCCHHHHHHHHTHHHHHHHHHSC--------HHHHHHHHTTSBHHHHHHHTSCCCHHHHHHHHHHTTCGGGTT-------
T ss_pred             CCCHHHHHHHHHHHHHHHHhhcc--------HHHHHHHhhhhhHHHHHHHccCCCHHHHHHHHHhcCcccchh-------
Confidence                 10  01111111111110        000112345688999999866 5655554433211000 000       


Q ss_pred             hchhhHHHHHHHHHhhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCc-
Q 014883          245 LKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ-  323 (416)
Q Consensus       245 ~s~~~~~~~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~-  323 (416)
                      .+....+...    .... .+   ..+.+++||++.|+++|++.+   +.+|++|++|++|..+  ++. +.|++.+|+ 
T Consensus       215 ~~~~~~~~~~----~~~~-~~---~~~~~~~gG~~~l~~~l~~~l---~~~i~~~~~V~~I~~~--~~~-v~v~~~~~~~  280 (498)
T 2iid_A          215 VSFIESLKHD----DIFA-YE---KRFDEIVDGMDKLPTAMYRDI---QDKVHFNAQVIKIQQN--DQK-VTVVYETLSK  280 (498)
T ss_dssp             SBHHHHHHHH----HHHT-TC---CCEEEETTCTTHHHHHHHHHT---GGGEESSCEEEEEEEC--SSC-EEEEEECSSS
T ss_pred             HHHHHHHHHH----hccc-cC---cceEEeCCcHHHHHHHHHHhc---ccccccCCEEEEEEEC--CCe-EEEEEecCCc
Confidence            0111111111    1111 11   126789999999999997644   4489999999999986  444 467766665 


Q ss_pred             ---EEEcCEEEEC-CCCCCCCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCCC
Q 014883          324 ---DILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL  376 (416)
Q Consensus       324 ---~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~  376 (416)
                         +++||+||++ |...+.++  .+.|+||+.+.+..++..++.+.|.++.|++||
T Consensus       281 ~~~~~~ad~vI~t~p~~~~~~i--~f~p~Lp~~~~~ai~~l~~~~~~kv~l~~~~~~  335 (498)
T 2iid_A          281 ETPSVTADYVIVCTTSRAVRLI--KFNPPLLPKKAHALRSVHYRSGTKIFLTCTTKF  335 (498)
T ss_dssp             CCCEEEESEEEECSCHHHHTTS--EEESCCCHHHHHHHHHCCEECEEEEEEEESSCG
T ss_pred             ccceEEeCEEEECCChHHHhhe--ecCCCCCHHHHHHHHhCCCcceeEEEEEeCCCC
Confidence               5899999965 44433443  356788888777777778999999999999997

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=99.84  E-value=5e-20  Score=182.09  Aligned_cols=244  Identities=15%  Similarity=0.160  Sum_probs=140.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCC-CeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCccccccccccccc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G-~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (416)
                      ..+||||||||++||+||++|+++| ++|+|+|+++++||+++|++.+|                               
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~~~t~~~~G-------------------------------   53 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHSPNYHG-------------------------------   53 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTTCCCCEETT-------------------------------
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCCcccccCCCC-------------------------------
Confidence            4579999999999999999999999 99999999999999999986543                               


Q ss_pred             cccCCCCceEeeCCCCeEEeeC-chHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhhcCCCC-hHHHHH
Q 014883          100 LLSQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLG-LMEKNQ  177 (416)
Q Consensus       100 ~~~~~~~~~~~dl~Gp~~~~~~-~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~-~~~k~~  177 (416)
                              +.+|. |++++... ..+.+++.++|+...  .......+.+ .+|+.. .|..  +     ... +.....
T Consensus        54 --------~~~d~-G~~~~~~~~~~~~~l~~~~g~~~~--~~~~~~~~~~-~~g~~~-~~~~--~-----~~~~~~~~~~  113 (424)
T 2b9w_A           54 --------RRYEM-GAIMGVPSYDTIQEIMDRTGDKVD--GPKLRREFLH-EDGEIY-VPEK--D-----PVRGPQVMAA  113 (424)
T ss_dssp             --------EECCS-SCCCBCTTCHHHHHHHHHHCCCCC--SCCCCEEEEC-TTSCEE-CGGG--C-----TTHHHHHHHH
T ss_pred             --------ccccc-CceeecCCcHHHHHHHHHhCCccc--cccccceeEc-CCCCEe-cccc--C-----cccchhHHHH
Confidence                    33566 46665333 467778888886432  1111122222 355543 2210  0     000 001112


Q ss_pred             HHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHHhccCCchhhhhhhchhhHHHHHHHH
Q 014883          178 LMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALY  257 (416)
Q Consensus       178 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~  257 (416)
                      +.++...+......... ........+.+..|+.+|+++.+.+. ..+.+...+....+. ++  .++|+...+    .|
T Consensus       114 ~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~l~~~~~~~-~~~~~~~~~~~~~~~-~~--~~~~a~~~~----~~  184 (424)
T 2b9w_A          114 VQKLGQLLATKYQGYDA-NGHYNKVHEDLMLPFDEFLALNGCEA-ARDLWINPFTAFGYG-HF--DNVPAAYVL----KY  184 (424)
T ss_dssp             HHHHHHHHHTTTTTTTS-SSSSSCCCGGGGSBHHHHHHHTTCGG-GHHHHTTTTCCCCCC-CT--TTSBHHHHH----HH
T ss_pred             HHHHHHHHhhhhhhccc-ccchhhhhhhhccCHHHHHHhhCcHH-HHHHHHHHHHhhccC-Ch--HhcCHHHHH----Hh
Confidence            22332222211110000 00001112345689999999887764 444322111111222 21  234543322    22


Q ss_pred             Hhhhc--cccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883          258 NSSIG--RFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (416)
Q Consensus       258 ~~s~~--~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (416)
                      +...+  .+.  .+..+++.+|+++++++|.+   .++.+|++|++|++|..+  +++ +.|++.+| +++||+||++
T Consensus       185 ~~~~~~~~~~--~~~~~~~~~g~~~l~~~l~~---~l~~~v~~~~~V~~i~~~--~~~-v~v~~~~g-~~~ad~Vv~a  253 (424)
T 2b9w_A          185 LDFVTMMSFA--KGDLWTWADGTQAMFEHLNA---TLEHPAERNVDITRITRE--DGK-VHIHTTDW-DRESDVLVLT  253 (424)
T ss_dssp             SCHHHHHHHH--HTCCBCCTTCHHHHHHHHHH---HSSSCCBCSCCEEEEECC--TTC-EEEEESSC-EEEESEEEEC
T ss_pred             hhHhhhhccc--CCceEEeCChHHHHHHHHHH---hhcceEEcCCEEEEEEEE--CCE-EEEEECCC-eEEcCEEEEC
Confidence            21110  011  01245789999999998854   567789999999999986  555 45887776 4999999954

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=99.84  E-value=3.7e-20  Score=186.56  Aligned_cols=303  Identities=14%  Similarity=0.102  Sum_probs=159.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCccccccccccccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (416)
                      +..+||+|||||++||+||+.|+++|++|+|||+++++||++++++..+  .+....+.                    .
T Consensus         9 ~~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~~--~~~~~~~~--------------------~   66 (489)
T 2jae_A            9 KGSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRVWTARGGS--EETDLSGE--------------------T   66 (489)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCCEEETTC--EEECTTSC--------------------E
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCCceeeeccCc--ccccccch--------------------h
Confidence            3467999999999999999999999999999999999999999876432  01100000                    0


Q ss_pred             cccCCCCceEeeCCCCeEEeeCchHHHHHHhcCcccccccccc-cceeee-ccC----CceeecCCChhhhhhcCCCChH
Q 014883          100 LLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI-DATFML-DAD----AKLCSVPDSRAAIFKDKSLGLM  173 (416)
Q Consensus       100 ~~~~~~~~~~~dl~Gp~~~~~~~~~~~~l~~~g~~~~~~f~~~-~~~~~~-~~~----g~~~~~p~~~~~~~~~~~l~~~  173 (416)
                      ........+.+|. |+.+++....+.+++.++|+... .+... ...+++ ..+    |....++....+.         
T Consensus        67 ~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---------  135 (489)
T 2jae_A           67 QKCTFSEGHFYNV-GATRIPQSHITLDYCRELGVEIQ-GFGNQNANTFVNYQSDTSLSGQSVTYRAAKADT---------  135 (489)
T ss_dssp             EECCCCTTCEEES-SCCCEETTSTHHHHHHHHTCCEE-EECCCCTTSEEECCCSSTTTTCCEEHHHHHHHH---------
T ss_pred             hhhcccCCCcCCc-chhhcccHHHHHHHHHHcCCceE-EccccCCCceEEecCCcccCCccccHHHHhhhh---------
Confidence            0001113445777 47766555578888999888532 12211 122333 212    4433322110000         


Q ss_pred             HHHHHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChh--------HHHHHHHHHHhccCCchhhhhhh
Q 014883          174 EKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHK--------IKSIVLYAIAMADYDQEVSEYVL  245 (416)
Q Consensus       174 ~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~  245 (416)
                       ...+..++......... .      +......+.++.+|+++++....        ...++............+..  .
T Consensus       136 -~~~~~~l~~~~~~~~~~-~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  205 (489)
T 2jae_A          136 -FGYMSELLKKATDQGAL-D------QVLSREDKDALSEFLSDFGDLSDDGRYLGSSRRGYDSEPGAGLNFGTEKKP--F  205 (489)
T ss_dssp             -HHHHHHHHHHHHHHTTT-T------TTSCHHHHHHHHHHHHHHTTCCTTSCCCCCGGGCEEECCCBTTCCCEECCC--C
T ss_pred             -hccHHHHHHHHHhcccc-c------cccchhhHHHHHHHHHHhhhhhhccccccccchhhccCCCcccccCCCCCC--c
Confidence             00011111111100000 0      00001123467777775432100        00000000000000000000  0


Q ss_pred             chhhHHH-HHHHHHhhhccccCCCccEEeecCCcchHHHHHHHHHHhcC-cEEEcCCceeEEEEecCCCcEEEEEeCCC-
Q 014883          246 KTRDGIN-RLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLASG-  322 (416)
Q Consensus       246 s~~~~~~-~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~G-g~i~l~~~V~~I~~~~~~g~~~gV~l~~G-  322 (416)
                      ....... .+..++........ ...+++++||++.|+++|++.+   + ++|++|++|++|..+  +++ +.|++.+| 
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gG~~~l~~~l~~~l---~~~~i~~~~~V~~i~~~--~~~-v~v~~~~g~  278 (489)
T 2jae_A          206 AMQEVIRSGIGRNFSFDFGYDQ-AMMMFTPVGGMDRIYYAFQDRI---GTDNIVFGAEVTSMKNV--SEG-VTVEYTAGG  278 (489)
T ss_dssp             CHHHHHHHTTTTTGGGGGCTTT-SSSEEEETTCTTHHHHHHHHHH---CGGGEETTCEEEEEEEE--TTE-EEEEEEETT
T ss_pred             CHHHHhhhhHHHHHhhhhcccc-CccEEeecCCHHHHHHHHHHhc---CCCeEEECCEEEEEEEc--CCe-EEEEEecCC
Confidence            0000000 01111111101111 1237789999999999997643   5 889999999999987  554 45776666 


Q ss_pred             --cEEEcCEEEEC-CCCCCCCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCCC
Q 014883          323 --QDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL  376 (416)
Q Consensus       323 --~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~  376 (416)
                        ++++||+||++ |...+..+..    +||+.+....++..++.+.|..+.|++||
T Consensus       279 ~~~~~~ad~vI~a~p~~~l~~l~~----~l~~~~~~~l~~~~~~~~~kv~l~~~~~~  331 (489)
T 2jae_A          279 SKKSITADYAICTIPPHLVGRLQN----NLPGDVLTALKAAKPSSSGKLGIEYSRRW  331 (489)
T ss_dssp             EEEEEEESEEEECSCHHHHTTSEE----CCCHHHHHHHHTEECCCEEEEEEEESSCH
T ss_pred             eEEEEECCEEEECCCHHHHHhCcc----CCCHHHHHHHHhCCCccceEEEEEeCCCC
Confidence              67999999965 4444455421    45555555555667889999999999986

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=99.76  E-value=1.5e-17  Score=174.86  Aligned_cols=276  Identities=12%  Similarity=0.091  Sum_probs=157.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCccccccccccccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (416)
                      +..+||||||||++||+||..|+++|++|+|||+++++||+++|.+..                                
T Consensus       334 ~~~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~ggri~T~~~~--------------------------------  381 (776)
T 4gut_A          334 YHNKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGGRVWDDKSF--------------------------------  381 (776)
T ss_dssp             GTSCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTTCCEECCS--------------------------------
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEecccceeceeeecccc--------------------------------
Confidence            346899999999999999999999999999999999999999987531                                


Q ss_pred             cccCCCCceEeeCCCCeEEee--CchHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhhcCCCChHHHHH
Q 014883          100 LLSQHPRNFNLDVSGPRVLFC--ADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQ  177 (416)
Q Consensus       100 ~~~~~~~~~~~dl~Gp~~~~~--~~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~  177 (416)
                            .++.+|+ |.+++..  ...+..++.++|+..... .....  ++..+|....  .   ...      ......
T Consensus       382 ------~G~~vd~-Ga~~i~G~~~np~~~l~~~lGl~~~~~-~~~~~--l~~~~g~~~~--~---~~~------~~~~~~  440 (776)
T 4gut_A          382 ------KGVTVGR-GAQIVNGCINNPVALMCEQLGISMHKF-GERCD--LIQEGGRITD--P---TID------KRMDFH  440 (776)
T ss_dssp             ------TTCCEES-SCCEEECCTTCHHHHHHHHHTCCCEEC-CSCCC--EECTTSCBCC--H---HHH------HHHHHH
T ss_pred             ------CCeEecc-CCeEEeCCccChHHHHHHHhCCccccc-ccccc--eEccCCcccc--h---hHH------HHHHHH
Confidence                  1233666 3666632  346667777777643211 11111  1111332210  0   000      000111


Q ss_pred             HHHHHHHHHhhcCCCccccccccccccccCCc--------HHHHHHhcCCChhHH--HHHHH---HHHhccCCchhhhhh
Q 014883          178 LMRFFKLVQGHLSLDESEENNVRISEEDLDSP--------FAEFLTKMKLPHKIK--SIVLY---AIAMADYDQEVSEYV  244 (416)
Q Consensus       178 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t--------~~~~l~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~  244 (416)
                      +.+++..+..+....          ....+.+        +.+|+++.+..-...  ..+.+   .+... .....  ..
T Consensus       441 ~~~ll~~~~~~~~~~----------~~~~d~sl~~~~~~~~~~~l~~~gv~~~~l~~~~l~~~~~~l~~~-~G~~l--~~  507 (776)
T 4gut_A          441 FNALLDVVSEWRKDK----------TQLQDVPLGEKIEEIYKAFIKESGIQFSELEGQVLQFHLSNLEYA-CGSNL--HQ  507 (776)
T ss_dssp             HHHHHHHHHHHGGGC----------CGGGCCBHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHH-HTSCT--TS
T ss_pred             HHHHHHHHHHHhhcc----------cccccccHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHHHh-cCCCh--HH
Confidence            222233222221100          0112233        334444444321110  11100   00000 00000  01


Q ss_pred             hchhhHHHHHHHHHhhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcE
Q 014883          245 LKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQD  324 (416)
Q Consensus       245 ~s~~~~~~~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~  324 (416)
                      ++...        ......+....+....+.+|++.+.++|++     |.+|++|++|++|..+  ++. +.|++.+|++
T Consensus       508 ls~~~--------~~~~~~~~~~~G~~~~~~~G~~~l~~aLa~-----gl~I~l~t~V~~I~~~--~~~-v~V~~~~G~~  571 (776)
T 4gut_A          508 VSARS--------WDHNEFFAQFAGDHTLLTPGYSVIIEKLAE-----GLDIQLKSPVQCIDYS--GDE-VQVTTTDGTG  571 (776)
T ss_dssp             BBTTT--------TTGGGGSCCCCSCEEECTTCTHHHHHHHHT-----TSCEESSCCEEEEECS--SSS-EEEEETTCCE
T ss_pred             cChhh--------hhhhhhHHhcCCCeEEECChHHHHHHHHHh-----CCcEEcCCeeEEEEEc--CCE-EEEEECCCcE
Confidence            11100        000001111113356789999999998753     6789999999999986  444 5688889999


Q ss_pred             EEcCEEEEC-CCCCCCCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCCCC
Q 014883          325 ILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK  377 (416)
Q Consensus       325 i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~~  377 (416)
                      +.||+||++ |...+....+.+.|+||+.+....++..++.+.|.++.|++||=
T Consensus       572 i~Ad~VIvA~P~~vL~~~~i~f~P~Lp~~~~~ai~~l~~g~~~KV~l~f~~~FW  625 (776)
T 4gut_A          572 YSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFW  625 (776)
T ss_dssp             EEESEEEECCCHHHHHTTCSEEESCCCHHHHHHHHHEEEECCEEEEEECSSCTT
T ss_pred             EEcCEEEECCCHHHHhhcccccCCCCCHHHHHHHHhCCCeeEEEEEEecCcccc
Confidence            999999954 54443333345788999888777777788999999999999974

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=99.76  E-value=2.2e-17  Score=159.25  Aligned_cols=240  Identities=11%  Similarity=0.070  Sum_probs=133.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccC-CCCCCcccccChhhhHhhhhcCCCCCCCCCCCcccccccccccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN-PFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~-~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (416)
                      +..+||+|||||++||+||+.|+++|++|+|||++ +++||++.++....      +...        .|          
T Consensus        42 ~~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGGr~~t~~~~~------~~~~--------~~----------   97 (376)
T 2e1m_A           42 GPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTFHAKK------GEPS--------PF----------   97 (376)
T ss_dssp             CSCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBTTCCEECCCT------TSCC--------SS----------
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCCceeeecccc------cccc--------cc----------
Confidence            34679999999999999999999999999999999 99999999886421      0000        00          


Q ss_pred             ccccCCCCceEeeCCCCeEEee-CchHHHHHHhcCcccccccccc-----------------------------------
Q 014883           99 RLLSQHPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKSI-----------------------------------  142 (416)
Q Consensus        99 ~~~~~~~~~~~~dl~Gp~~~~~-~~~~~~~l~~~g~~~~~~f~~~-----------------------------------  142 (416)
                           ....+.+++ |++++.. ...+.+++.++|+..+..+..-                                   
T Consensus        98 -----~~~~~~~e~-G~~~~~~~~~~~~~~~~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~q  171 (376)
T 2e1m_A           98 -----ADPAQYAEA-GAMRLPSFHPLTLALIDKLGLKRRLFFNVDIDPQTGNQDAPVPPVFYKSFKDGKTWTNGAPSPEF  171 (376)
T ss_dssp             -----SSTTCCEES-SCCCEETTCHHHHHHHHHTTCCEEEECSSCCCTTSSBCSSCCCCCEEECSSTTCEEESSCCCTTC
T ss_pred             -----cCCCcEEec-CceeecchHHHHHHHHHHcCCCcceeeccccccccccccccccccceeeeccceeEeccCCcccc
Confidence                 012344677 4766643 3356778888888766533221                                   


Q ss_pred             ------cceeeeccCCceeecC---CChhhhhh-cCCCChH-------H--HHHHHHHHHHHHhhcCC-------Cc-cc
Q 014883          143 ------DATFMLDADAKLCSVP---DSRAAIFK-DKSLGLM-------E--KNQLMRFFKLVQGHLSL-------DE-SE  195 (416)
Q Consensus       143 ------~~~~~~~~~g~~~~~p---~~~~~~~~-~~~l~~~-------~--k~~l~~~~~~~~~~~~~-------~~-~~  195 (416)
                            ...+++. +|+.....   ... ..+. ...+.+.       +  .+.+.+|+..+......       .+ +.
T Consensus       172 ~~r~~~~~~~~~~-~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  249 (376)
T 2e1m_A          172 KEPDKRNHTWIRT-NREQVRRAQYATDP-SSINEGFHLTGCETRLTVSDMVNQALEPVRDYYSVKQDDGTRVNKPFKEWL  249 (376)
T ss_dssp             BCCCCCCCSEEEE-TTEEEEHHHHHHCT-HHHHHHTTCCGGGGGSCHHHHHHHHHHHHHHHHEEEETTTEEEECCHHHHH
T ss_pred             cccccCCCceEEE-CCceecccccccCH-HHhccccCCchhhcccCHHHHHHHHHHHHHHhhhhccccccccccccchhh
Confidence                  0111111 33222110   000 0110 0001111       1  11222333322110000       00 00


Q ss_pred             cccccccccccCCcHHHHHH-hcCCChhHHHHHHHHHHhccCCchhhhhhhchhhHHHHHHHHHhhhccccCCCccEEee
Q 014883          196 ENNVRISEEDLDSPFAEFLT-KMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYP  274 (416)
Q Consensus       196 ~~~~~~~~~~~~~t~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~s~~~~g~~~~~~~~p  274 (416)
                      ........+++..|+.+||+ +.+.++..++++...   .++...   ..+|....   +. +. +  .+.. ...++.+
T Consensus       250 ~~~~~~~~~lD~~S~~~~L~~~~g~s~~~~~~~~~~---~~~~~~---~~~s~l~~---l~-~~-~--~~~~-~~~~~~i  315 (376)
T 2e1m_A          250 AGWADVVRDFDGYSMGRFLREYAEFSDEAVEAIGTI---ENMTSR---LHLAFFHS---FL-GR-S--DIDP-RATYWEI  315 (376)
T ss_dssp             HHHHHHHHHHTTCBHHHHHHHTSCCCHHHHHHHHHH---TTCTTT---TTSBHHHH---HH-HC-S--CSCT-TCCEEEE
T ss_pred             ccchHHHHHHhCCCHHHHHhhccCCCHHHHHHHHhh---cCcccc---chhhHHHH---HH-Hh-h--hhcc-CCceEEE
Confidence            01111223567899999999 789998888765322   122211   02333221   11 11 1  1111 1337889


Q ss_pred             cCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEe
Q 014883          275 IYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTD  308 (416)
Q Consensus       275 ~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~  308 (416)
                      .||++.|+++|++   .++.+|++|++|++|..+
T Consensus       316 ~GG~~~l~~~l~~---~l~~~i~l~~~V~~I~~~  346 (376)
T 2e1m_A          316 EGGSRMLPETLAK---DLRDQIVMGQRMVRLEYY  346 (376)
T ss_dssp             TTCTTHHHHHHHH---HGGGTEECSEEEEEEEEC
T ss_pred             CCcHHHHHHHHHH---hcCCcEEecCeEEEEEEC
Confidence            9999999998875   457899999999999986

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=99.73  E-value=2.1e-16  Score=164.62  Aligned_cols=102  Identities=11%  Similarity=-0.029  Sum_probs=79.7

Q ss_pred             cEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCC------CcEEEcCEEEEC-CCCCCCCC-
Q 014883          270 ALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS------GQDILSHKLVLD-PSFTVPGS-  341 (416)
Q Consensus       270 ~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~------G~~i~Ad~VI~~-p~~~~~~l-  341 (416)
                      .+..++||++.|+++|++     +.+|++|++|++|..+  ++. +.|++.+      |++++||+||++ |...+.++ 
T Consensus       392 ~~~~~~gG~~~l~~~La~-----~l~I~l~~~V~~I~~~--~~~-v~V~~~~~~~~~~~~~~~Ad~VI~tvP~~vL~~l~  463 (662)
T 2z3y_A          392 SHLTVRNGYSCVPVALAE-----GLDIKLNTAVRQVRYT--ASG-CEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQP  463 (662)
T ss_dssp             CCEEETTCTTHHHHHHTT-----TCEEETTEEEEEEEEE--TTE-EEEEEEESSCTTCEEEEEESEEEECCCHHHHHCSS
T ss_pred             ceeeecCcHHHHHHHHHh-----cCceecCCeEEEEEEC--CCc-EEEEEeecccCCCCeEEEeCEEEECCCHHHHhccc
Confidence            367899999999998864     5589999999999987  333 4666555      568999999965 54444442 


Q ss_pred             -CCCchhhhhhhhhhccccCCcceEEEEEEEecCCCCCC
Q 014883          342 -LASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD  379 (416)
Q Consensus       342 -~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~~~~  379 (416)
                       .+.+.|+||+.+.+..++..++.+.|.++.|++||-++
T Consensus       464 ~~i~f~P~LP~~k~~Ai~~l~~g~~~KV~l~f~~~fW~~  502 (662)
T 2z3y_A          464 PAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDP  502 (662)
T ss_dssp             CSSEEESCCCHHHHHHHHHSEECCCEEEEEECSSCCSCT
T ss_pred             CceEEcCCCCHHHHHHHHhCCccceeEEEEEcCcccccC
Confidence             13578999998777777788999999999999998543

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=99.72  E-value=1.7e-18  Score=169.70  Aligned_cols=231  Identities=13%  Similarity=0.150  Sum_probs=130.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhC-CCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCcccccccccccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~-G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (416)
                      +.++||||||||++||+||..|+++ |++|+|+|+++++||++++.....                              
T Consensus         5 ~~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~~~~~~~~~------------------------------   54 (399)
T 1v0j_A            5 TARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYSEAEPQ------------------------------   54 (399)
T ss_dssp             CCSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGGGCEEECTT------------------------------
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeeccccC------------------------------
Confidence            3468999999999999999999999 999999999999999999976420                              


Q ss_pred             ccccCCCCceEee-CCCCeEEee-CchHHHHHHhcCcccccccccccceeeeccCCceeecCCChhh---hhhcCCCChH
Q 014883           99 RLLSQHPRNFNLD-VSGPRVLFC-ADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAA---IFKDKSLGLM  173 (416)
Q Consensus        99 ~~~~~~~~~~~~d-l~Gp~~~~~-~~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~---~~~~~~l~~~  173 (416)
                             .++.+| . |++++.. ...+.+++.++++.  ..+..  ..+++ .+|+.+++|.+...   ++.. .+.+.
T Consensus        55 -------~g~~~~~~-G~~~~~~~~~~~~~~~~~~g~~--~~~~~--~~~~~-~~G~~~~~p~~~~~~~~l~~~-~~~~~  120 (399)
T 1v0j_A           55 -------TGIEVHKY-GAHLFHTSNKRVWDYVRQFTDF--TDYRH--RVFAM-HNGQAYQFPMGLGLVSQFFGK-YFTPE  120 (399)
T ss_dssp             -------TCCEEETT-SCCCEEESCHHHHHHHTTTCCB--CCCCC--CEEEE-ETTEEEEESSSHHHHHHHHTS-CCCHH
T ss_pred             -------CCEEEEeC-CCcEEcCCcHHHHHHHHHhhhh--hcccc--ceEEE-ECCEEEeCCCCHHHHHHHhcc-cCCHH
Confidence                   123354 4 5776654 34678888888762  22221  22333 37888888876422   2221 11222


Q ss_pred             HHHHHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHH-HHHHhccCCchhhhhhhchhhHHH
Q 014883          174 EKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVL-YAIAMADYDQEVSEYVLKTRDGIN  252 (416)
Q Consensus       174 ~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~  252 (416)
                      +.   .+++......             .....+.++.+|+.+..-.+....++. +....  +..++  .++|+... .
T Consensus       121 ~~---~~~l~~~~~~-------------~~~~~~~s~~e~l~~~~g~~~~~~~~~~~~~~~--~~~~~--~~ls~~~~-~  179 (399)
T 1v0j_A          121 QA---RQLIAEQAAE-------------IDTADAQNLEEKAISLIGRPLYEAFVKGYTAKQ--WQTDP--KELPAANI-T  179 (399)
T ss_dssp             HH---HHHHHHHGGG-------------SCTTC----CCHHHHHHCHHHHHHHTHHHHHHH--HTSCG--GGSCGGGC-S
T ss_pred             HH---HHHHHHHhhc-------------cCCCCcccHHHHHHHHHhHHHHHHHHHHHHHhh--cCCCh--hhcChHhh-h
Confidence            22   2222211110             011234678888876322222333332 11122  22222  24554331 0


Q ss_pred             HHHHHHhhhccccCCCccE-EeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEE-EcCEE
Q 014883          253 RLALYNSSIGRFQNALGAL-IYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDI-LSHKL  330 (416)
Q Consensus       253 ~~~~~~~s~~~~g~~~~~~-~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i-~Ad~V  330 (416)
                      ++.........+.  ...+ .+|+||+++|+++|++   .+|++|++|++|++|..   +     |  .   ++ .||+|
T Consensus       180 ~~~~~~~~~~~~~--~~~~~~~p~gG~~~l~~~l~~---~~g~~I~l~~~V~~I~~---~-----v--~---~~~~aD~V  241 (399)
T 1v0j_A          180 RLPVRYTFDNRYF--SDTYEGLPTDGYTAWLQNMAA---DHRIEVRLNTDWFDVRG---Q-----L--R---PGSPAAPV  241 (399)
T ss_dssp             CCCCCSSSCCCSC--CCSEEECBTTHHHHHHHHHTC---STTEEEECSCCHHHHHH---H-----H--T---TTSTTCCE
T ss_pred             cceeEeccccchh--hhhhcccccccHHHHHHHHHh---cCCeEEEECCchhhhhh---h-----h--h---hcccCCEE
Confidence            0000000000111  0124 3999999999998864   57899999999999853   1     2  1   35 69999


Q ss_pred             EEC
Q 014883          331 VLD  333 (416)
Q Consensus       331 I~~  333 (416)
                      |++
T Consensus       242 I~t  244 (399)
T 1v0j_A          242 VYT  244 (399)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            965

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=99.72  E-value=1.2e-17  Score=172.23  Aligned_cols=105  Identities=9%  Similarity=-0.029  Sum_probs=75.7

Q ss_pred             EEeecCCcchHHHHHHHHHHhcCcEEEcCCcee--EEEEecCCC-----cEEEE-EeCCCc--EEEcCEEEEC-CCCCC-
Q 014883          271 LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVI--SLLTDQNSG-----SYKGV-RLASGQ--DILSHKLVLD-PSFTV-  338 (416)
Q Consensus       271 ~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~--~I~~~~~~g-----~~~gV-~l~~G~--~i~Ad~VI~~-p~~~~-  338 (416)
                      +.++.||+++|+++|++.+.. |+.|+|+++|+  +|.++. ++     ..+.| ...+|+  +++||+||++ |...+ 
T Consensus       339 ~~~i~GG~~~L~~aLa~~l~~-g~~I~l~~~V~~~~I~~~~-~g~~~~~~~V~V~~~~~G~~~~~~aD~VIvTvP~~~L~  416 (721)
T 3ayj_A          339 YTLPVTENVEFIRNLFLKAQN-VGAGKLVVQVRQERVANAC-HSGTASARAQLLSYDSHNAVHSEAYDFVILAVPHDQLT  416 (721)
T ss_dssp             ECCSSSSTHHHHHHHHHHHHH-HTTTSEEEEEECEEEEEEE-ECSSSSCCEEEEEEETTCCEEEEEESEEEECSCHHHHH
T ss_pred             eeEECCcHHHHHHHHHHhccc-CCceEeCCEEEeeeEEECC-CCCccccceEEEEEecCCceEEEEcCEEEECCCHHHHh
Confidence            678999999999999876432 78899999999  999863 33     13566 446677  7999999974 43322 


Q ss_pred             -----CCCC-------C---------C----chhhh-h-------hhhhhccccCCcceEEEEEEEe-----cCCCC
Q 014883          339 -----PGSL-------A---------S----SHQQL-Q-------ESFQAFSLSDNKGKVARGICIT-----RSSLK  377 (416)
Q Consensus       339 -----~~l~-------~---------~----~~~~l-~-------~~~~~~~~~~~~~~~~k~i~i~-----~~p~~  377 (416)
                           .++.       .         +    ++|.| |       ..+....++..++..+|..+.|     ++||=
T Consensus       417 ~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~pplLlp~~~~~~~~~~~~Ai~~l~~~~s~Kv~l~~~~~~~~~~fW  493 (721)
T 3ayj_A          417 PIVSRSGFEHAASQNLGDAGLGLETHTYNQVYPPLLLSDSSPAANARIVTAIGQLHMARSSKVFATVKTAALDQPWV  493 (721)
T ss_dssp             HHHSSSCSSCEEEEEESCGGGTCCCEEEEEEBCSSCCCSSCHHHHHHHHHHHHTCCEECEEEEEEEEEGGGGGSTTS
T ss_pred             hccccccccccccccccccccccccccccccCCcccCCcccccccHHHHHHHHhcCcccceEEEEEEccccCCCCcc
Confidence                 1221       0         0    22335 6       6777777888999999999999     88974

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=99.72  E-value=3.8e-16  Score=165.26  Aligned_cols=103  Identities=12%  Similarity=-0.008  Sum_probs=79.7

Q ss_pred             ccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCC------CcEEEcCEEEEC-CCCCCCCC
Q 014883          269 GALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS------GQDILSHKLVLD-PSFTVPGS  341 (416)
Q Consensus       269 ~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~------G~~i~Ad~VI~~-p~~~~~~l  341 (416)
                      +.++.++||++.|+++|++     +..|+||++|++|..+  ++. +.|++.+      |++++||+||++ |...+.++
T Consensus       562 g~~~~~~gG~~~L~~aLa~-----~l~I~Lnt~V~~I~~~--~~g-V~V~~~~~~~~~~g~~i~AD~VIvTvPl~vLk~l  633 (852)
T 2xag_A          562 GSHLTVRNGYSCVPVALAE-----GLDIKLNTAVRQVRYT--ASG-CEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQ  633 (852)
T ss_dssp             SCCEEETTCTTHHHHHHTT-----TCCEECSEEEEEEEEE--TTE-EEEEEEESSSTTCEEEEEESEEEECCCHHHHHCS
T ss_pred             CceEEecCcHHHHHHHHHh-----CCCEEeCCeEEEEEEc--CCc-EEEEEeecccCCCCeEEECCEEEECCCHHHHHhh
Confidence            3467899999999998865     3479999999999987  443 4566544      568999999976 54444442


Q ss_pred             --CCCchhhhhhhhhhccccCCcceEEEEEEEecCCCCCC
Q 014883          342 --LASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD  379 (416)
Q Consensus       342 --~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~~~~  379 (416)
                        .+.+.|+||..+....++..++.+.|.++.|++||-+.
T Consensus       634 ~~~I~F~P~LP~~k~~AI~~l~~g~v~KV~L~F~~~fW~~  673 (852)
T 2xag_A          634 PPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDP  673 (852)
T ss_dssp             SCSSEEESCCCHHHHHHHHHSEECCCEEEEEECSSCCSCT
T ss_pred             hcccccCCCCCHHHHHHHHcCCccceEEEEEEcCCcccCC
Confidence              13578999998777777778999999999999998554

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=99.70  E-value=1.3e-17  Score=161.69  Aligned_cols=223  Identities=13%  Similarity=0.175  Sum_probs=129.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCccccccccccccccc
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL  101 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (416)
                      ++||+|||||++||+||.+|+++|++|+|+|+++++||++.++..+|                                 
T Consensus         1 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g---------------------------------   47 (367)
T 1i8t_A            1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEG---------------------------------   47 (367)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCEEEETT---------------------------------
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcceEeeccCC---------------------------------
Confidence            37999999999999999999999999999999999999999976432                                 


Q ss_pred             cCCCCceEeeCCCCeEEeeCc-hHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhhc-CCCChHHHHHHH
Q 014883          102 SQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKD-KSLGLMEKNQLM  179 (416)
Q Consensus       102 ~~~~~~~~~dl~Gp~~~~~~~-~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~-~~l~~~~k~~l~  179 (416)
                            +.+|..|++++.... .+.+++.+++.  ...+...  .+.+ .+|+.+++|.+...+... ....+.   .+.
T Consensus        48 ------~~~~~~G~~~~~~~~~~~~~~~~~l~~--~~~~~~~--~~~~-~~g~~~~~p~~~~~~~~l~~~~~~~---~~~  113 (367)
T 1i8t_A           48 ------IQIHKYGAHIFHTNDKYIWDYVNDLVE--FNRFTNS--PLAI-YKDKLFNLPFNMNTFHQMWGVKDPQ---EAQ  113 (367)
T ss_dssp             ------EEEETTSCCCEEESCHHHHHHHHTTSC--BCCCCCC--CEEE-ETTEEEESSBSHHHHHHHHCCCCHH---HHH
T ss_pred             ------ceeeccCCceecCCCHHHHHHHHHhhh--hhhcccc--ceEE-ECCeEEEcCCCHHHHHHHhccCCHH---HHH
Confidence                  335422577765443 56667766653  2222221  1222 278888888764322211 011122   223


Q ss_pred             HHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhHHH-HHH-HHHHhccCCchhhhhhhchhhHHHHHHHH
Q 014883          180 RFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS-IVL-YAIAMADYDQEVSEYVLKTRDGINRLALY  257 (416)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~~~~  257 (416)
                      +++......             .....+.++.+|+.+. ..+.+.+ ++. +....  +..++  .++|+... .++.  
T Consensus       114 ~~l~~~~~~-------------~~~~~~~s~~~~~~~~-~g~~~~~~~~~p~~~~~--~~~~~--~~lsa~~~-~~l~--  172 (367)
T 1i8t_A          114 NIINAQKKK-------------YGDKVPENLEEQAISL-VGEDLYQALIKGYTEKQ--WGRSA--KELPAFII-KRIP--  172 (367)
T ss_dssp             HHHHHHTTT-------------TCCCCCCSHHHHHHHH-HHHHHHHHHTHHHHHHH--HSSCG--GGSCTTSS-CCCC--
T ss_pred             HHHHHHhhc-------------cCCCCCccHHHHHHHH-HhHHHHHHHHHHHHhhh--hCCCh--HHcCHHHH-hhce--
Confidence            333332211             0112457899999865 3333333 222 11122  22232  24554321 0000  


Q ss_pred             Hhh-h-ccccCCCccE-EeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883          258 NSS-I-GRFQNALGAL-IYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (416)
Q Consensus       258 ~~s-~-~~~g~~~~~~-~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (416)
                      ... . ..+.  .+.+ .+|+||+++|+++|++     |++|++|++|++|..     +   |      ++.||+||++
T Consensus       173 ~~~~~~~~~~--~~~~~~~p~gG~~~l~~~l~~-----g~~i~l~~~V~~i~~-----~---v------~~~~D~VV~a  230 (367)
T 1i8t_A          173 VRFTFDNNYF--SDRYQGIPVGGYTKLIEKMLE-----GVDVKLGIDFLKDKD-----S---L------ASKAHRIIYT  230 (367)
T ss_dssp             BCSSSCCCSC--CCSEEECBTTCHHHHHHHHHT-----TSEEECSCCGGGSHH-----H---H------HTTEEEEEEC
T ss_pred             eeeccccccc--cchhhcccCCCHHHHHHHHhc-----CCEEEeCCceeeech-----h---h------hccCCEEEEe
Confidence            000 0 0111  1234 3999999999998865     689999999998841     1   2      2458999954

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=99.67  E-value=6.3e-17  Score=157.71  Aligned_cols=215  Identities=13%  Similarity=0.143  Sum_probs=125.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCcccccccccccccc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (416)
                      +++||+|||||++||++|..|+++|++|+|+|+++++||++.+.+...                                
T Consensus         2 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~~~--------------------------------   49 (384)
T 2bi7_A            2 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSE--------------------------------   49 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCEEECTT--------------------------------
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcCCccccccccC--------------------------------
Confidence            357999999999999999999999999999999999999999876521                                


Q ss_pred             ccCCCCceEe-eCCCCeEEeeC-chHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhhc--CCCChHHHH
Q 014883          101 LSQHPRNFNL-DVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKD--KSLGLMEKN  176 (416)
Q Consensus       101 ~~~~~~~~~~-dl~Gp~~~~~~-~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~--~~l~~~~k~  176 (416)
                           .++.+ |. |++++... ..+.+++.+++..  ..+..  ..+++. +|+.+++|.+...+...  ..+++.+  
T Consensus        50 -----~g~~~~~~-G~~~~~~~~~~~~~~~~~l~~~--~~~~~--~~~~~~-~g~~~~~P~~~~~~~~l~~~~~~~~~--  116 (384)
T 2bi7_A           50 -----TNVMVHVY-GPHIFHTDNETVWNYVNKHAEM--MPYVN--RVKATV-NGQVFSLPINLHTINQFFSKTCSPDE--  116 (384)
T ss_dssp             -----TCCEEETT-SCCCEEESCHHHHHHHHTTSCE--EECCC--CEEEEE-TTEEEEESCCHHHHHHHTTCCCCHHH--
T ss_pred             -----CCceEeeC-CceEECCCCHHHHHHHHHHhhh--ccccc--ceEEEE-CCEEEECCCChhHHHHHhcccCCHHH--
Confidence                 12233 45 57776543 4677888877642  12211  122332 78888888764322111  1122322  


Q ss_pred             HHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhHHH-HHH-HHHHhccCCchhhhhhhchhhHHHHH
Q 014883          177 QLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS-IVL-YAIAMADYDQEVSEYVLKTRDGINRL  254 (416)
Q Consensus       177 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~  254 (416)
                       +.+++....   ..          . ...+.++.+|+.+. ..+.+.+ ++. +....  +..++  .++|+... .++
T Consensus       117 -~~~~l~~~~---~~----------~-~~~~~sl~e~~~~~-~g~~~~~~~~~p~~~~~--~~~~~--~~ls~~~~-~r~  175 (384)
T 2bi7_A          117 -ARALIAEKG---DS----------T-IADPQTFEEEALRF-IGKELYEAFFKGYTIKQ--WGMQP--SELPASIL-KRL  175 (384)
T ss_dssp             -HHHHHHHHS---CC----------S-CSSCCBHHHHHHHH-HCHHHHHHHTHHHHHHH--HSSCG--GGSBGGGC-CSC
T ss_pred             -HHHHHHHhh---hc----------c-CCCCcCHHHHHHHh-hcHHHHHHHHHHHHHHH--hCCCH--HHhCHHHH-hcc
Confidence             222332211   10          0 13467999999865 3344443 322 12122  22222  24554321 000


Q ss_pred             HHHHhhhccccCCCccEE-eecCCcchHHHHHHHHHHhcCcEEEcCCcee-EEE
Q 014883          255 ALYNSSIGRFQNALGALI-YPIYGQGELPQAFCRRAAVKGCLYVLRMPVI-SLL  306 (416)
Q Consensus       255 ~~~~~s~~~~g~~~~~~~-~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~-~I~  306 (416)
                      .........+.  .+.+. +|+||+++|+++|++   ..|++|++|++|+ +|.
T Consensus       176 ~~~~~~~~~~~--~~~~~~~p~gG~~~l~~~l~~---~~g~~I~l~~~V~~~i~  224 (384)
T 2bi7_A          176 PVRFNYDDNYF--NHKFQGMPKCGYTQMIKSILN---HENIKVDLQREFIVEER  224 (384)
T ss_dssp             CCCSSSCCCSC--CCSEEEEETTHHHHHHHHHHC---STTEEEEESCCCCGGGG
T ss_pred             ccccccccccc--cccccEEECcCHHHHHHHHHh---cCCCEEEECCeeehhhh
Confidence            00000000111  12343 999999999998864   5789999999999 773

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=99.67  E-value=1.2e-16  Score=155.39  Aligned_cols=211  Identities=15%  Similarity=0.211  Sum_probs=124.0

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccC-hhhhHhhhhcCCCCCCCCCCCccccccccccc
Q 014883           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS-IADLTHFLNSHSTPSSVCPDPLYSDVEISNYA   97 (416)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (416)
                      +...+||+|||||++||+||..|+++|++|+|+|+++++||++.+.. ..|                             
T Consensus        26 ~~~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~~G-----------------------------   76 (397)
T 3hdq_A           26 ESKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYDCYDDAG-----------------------------   76 (397)
T ss_dssp             CCCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGCCEECTTS-----------------------------
T ss_pred             cCCCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCCccceeeccCC-----------------------------
Confidence            34579999999999999999999999999999999999999999865 222                             


Q ss_pred             cccccCCCCceEe-eCCCCeEEeeC-chHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhh--cCCCChH
Q 014883           98 SRLLSQHPRNFNL-DVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFK--DKSLGLM  173 (416)
Q Consensus        98 ~~~~~~~~~~~~~-dl~Gp~~~~~~-~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~--~~~l~~~  173 (416)
                                +.+ |. |++++... ..+.+++.+++..  ..+.  ...+++. +|+++++|.+...+..  ...+++.
T Consensus        77 ----------~~~~~~-G~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~-~g~l~~lP~~~~~~~~l~~~~~~~~  140 (397)
T 3hdq_A           77 ----------VLIHPY-GPHIFHTNSKDVFEYLSRFTEW--RPYQ--HRVLASV-DGQLLPIPINLDTVNRLYGLNLTSF  140 (397)
T ss_dssp             ----------CEECTT-SCCCCEESCHHHHHHHHTSCCE--EECC--CBEEEEE-TTEEEEESCCHHHHHHHHTCCCCHH
T ss_pred             ----------ceEeec-CCcccCCChHHHHHHHHHhhhc--cccc--ccceEEE-CCEEEEcCCChHHHHHhhccCCCHH
Confidence                      222 44 47766543 4677788777632  1121  1223333 8899999987533211  1122332


Q ss_pred             HHHHHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHH-HHHHhccCCchhhhhhhchhhHHH
Q 014883          174 EKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVL-YAIAMADYDQEVSEYVLKTRDGIN  252 (416)
Q Consensus       174 ~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~  252 (416)
                      ..   ..++.. ..              .....+.++.+|+.+..-.+....++. +....  |..++  +++|+.+. .
T Consensus       141 ~~---~~~l~~-~~--------------~~~~~~~s~~e~~~~~~G~~~~e~~~~py~~k~--~~~~~--~~Lsa~~~-~  197 (397)
T 3hdq_A          141 QV---EEFFAS-VA--------------EKVEQVRTSEDVVVSKVGRDLYNKFFRGYTRKQ--WGLDP--SELDASVT-A  197 (397)
T ss_dssp             HH---HHHHHH-HC--------------CCCSSCCBHHHHHHHHHHHHHHHHHTHHHHHHH--HSSCG--GGSBTTTG-G
T ss_pred             HH---HHHHhh-cc--------------cCCCCCcCHHHHHHHhcCHHHHHHHHHHHhCch--hCCCH--HHHHHHHH-H
Confidence            22   222221 00              112346799999875321222222322 11122  23333  35665431 1


Q ss_pred             HHHHHHhhhccccCC--CccE-EeecCCcchHHHHHHHHHHhcCcEEEcCCceeE
Q 014883          253 RLALYNSSIGRFQNA--LGAL-IYPIYGQGELPQAFCRRAAVKGCLYVLRMPVIS  304 (416)
Q Consensus       253 ~~~~~~~s~~~~g~~--~~~~-~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~  304 (416)
                      ++.    ....+...  ...+ .+|+||.++|.++|+   +..|++|+||++|++
T Consensus       198 Rvp----~~~~~d~~yf~~~~qg~P~gGy~~l~e~l~---~~~g~~V~l~~~v~~  245 (397)
T 3hdq_A          198 RVP----TRTNRDNRYFADTYQAMPLHGYTRMFQNML---SSPNIKVMLNTDYRE  245 (397)
T ss_dssp             GSC----CCSSCCCBSCCCSEEEEETTCHHHHHHHHT---CSTTEEEEESCCGGG
T ss_pred             hcC----cccccCccchhhhheeccCCCHHHHHHHHH---hccCCEEEECCeEEe
Confidence            110    00011100  1224 489999999999774   467999999999983

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.64  E-value=7e-15  Score=140.93  Aligned_cols=100  Identities=10%  Similarity=-0.011  Sum_probs=78.2

Q ss_pred             EEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC-CCCCCCCCCCCchhhh
Q 014883          271 LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQL  349 (416)
Q Consensus       271 ~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l  349 (416)
                      .+.+.+|++.+.++|++.   +|++|+++++|++|..+  ++. +.|++.+|+++.||.||+. |.....+|+....|+|
T Consensus       104 ~~~~~~g~~~l~~~l~~~---~g~~i~~~~~V~~i~~~--~~~-~~v~~~~g~~~~ad~vV~A~p~~~~~~ll~~~~~~l  177 (342)
T 3qj4_A          104 NFVAPQGISSIIKHYLKE---SGAEVYFRHRVTQINLR--DDK-WEVSKQTGSPEQFDLIVLTMPVPEILQLQGDITTLI  177 (342)
T ss_dssp             EEECTTCTTHHHHHHHHH---HTCEEESSCCEEEEEEC--SSS-EEEEESSSCCEEESEEEECSCHHHHTTCBSTHHHHS
T ss_pred             ceecCCCHHHHHHHHHHh---cCCEEEeCCEEEEEEEc--CCE-EEEEECCCCEEEcCEEEECCCHHHHHHHhccccccc
Confidence            346789999999988764   49999999999999986  444 5688888888999999954 5444456554456677


Q ss_pred             hhhhhhccccCCcceEEEEEEEecCCC
Q 014883          350 QESFQAFSLSDNKGKVARGICITRSSL  376 (416)
Q Consensus       350 ~~~~~~~~~~~~~~~~~k~i~i~~~p~  376 (416)
                      |+......++.++..+.++.+.|++|+
T Consensus       178 ~~~~~~~l~~~~~~~~~~v~l~~~~~~  204 (342)
T 3qj4_A          178 SECQRQQLEAVSYSSRYALGLFYEAGT  204 (342)
T ss_dssp             CHHHHHHHHTCCBCCEEEEEEECSSCC
T ss_pred             CHHHHHHHhcCCccccEEEEEEECCCC
Confidence            776666667788999999999999874

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.37  E-value=3e-12  Score=123.19  Aligned_cols=60  Identities=17%  Similarity=0.191  Sum_probs=47.1

Q ss_pred             EeecCC---cchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCC--cEEEcCEEEEC
Q 014883          272 IYPIYG---QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG--QDILSHKLVLD  333 (416)
Q Consensus       272 ~~p~gG---~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G--~~i~Ad~VI~~  333 (416)
                      +.+..|   ...+.++|.+.+++.|++|+++++|++|..+  ++..+.|++.+|  .+++||.||+.
T Consensus       140 ~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~--~~~~~~v~~~~g~~~~~~a~~VV~A  204 (369)
T 3dme_A          140 VSPSTGIVDSHALMLAYQGDAESDGAQLVFHTPLIAGRVR--PEGGFELDFGGAEPMTLSCRVLINA  204 (369)
T ss_dssp             EETTCEEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEEC--TTSSEEEEECTTSCEEEEEEEEEEC
T ss_pred             ECCCCEEECHHHHHHHHHHHHHHCCCEEECCCEEEEEEEc--CCceEEEEECCCceeEEEeCEEEEC
Confidence            344444   3578899999999999999999999999986  443356887777  48999999943

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.36  E-value=1.5e-11  Score=121.74  Aligned_cols=61  Identities=21%  Similarity=0.202  Sum_probs=51.2

Q ss_pred             EEeecC-C---cchHHHHHHHHHHhcCcEEEcCC---ceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883          271 LIYPIY-G---QGELPQAFCRRAAVKGCLYVLRM---PVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (416)
Q Consensus       271 ~~~p~g-G---~~~l~~al~r~~~~~Gg~i~l~~---~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (416)
                      ++.+.+ |   ...+.++|.+.+++.|++|++++   +|++|..+  ++++++|++.+|++++||+||+.
T Consensus       149 ~~~~~~~g~~~~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~--~~~v~gV~t~~G~~i~Ad~VV~A  216 (438)
T 3dje_A          149 YFARSGAGWAHARNALVAAAREAQRMGVKFVTGTPQGRVVTLIFE--NNDVKGAVTADGKIWRAERTFLC  216 (438)
T ss_dssp             EEESSSCEEECHHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEE--TTEEEEEEETTTEEEECSEEEEC
T ss_pred             EEeCCCCEEecHHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEec--CCeEEEEEECCCCEEECCEEEEC
Confidence            445555 4   35788999999999999999999   99999987  77777899988889999999943

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=99.27  E-value=4.2e-11  Score=125.09  Aligned_cols=59  Identities=19%  Similarity=0.206  Sum_probs=49.3

Q ss_pred             EEeecCCc---chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 014883          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (416)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~  332 (416)
                      ..++.+|.   ..+.++|.+.+++.|++|+++++|++|..+  +++ ++|++.+|++++||.||+
T Consensus       406 ~~~p~~g~v~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~--~~~-v~V~t~~G~~i~Ad~VVl  467 (676)
T 3ps9_A          406 ITYPQGGWLCPAELTRNVLELAQQQGLQIYYQYQLQNFSRK--DDC-WLLNFAGDQQATHSVVVL  467 (676)
T ss_dssp             EEETTCEEECHHHHHHHHHHHHHHTTCEEEESCCEEEEEEE--TTE-EEEEETTSCEEEESEEEE
T ss_pred             EEecCCeeeCHHHHHHHHHHHHHhCCCEEEeCCeeeEEEEe--CCe-EEEEECCCCEEECCEEEE
Confidence            44565553   578899999999999999999999999987  555 588888888999999994

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=99.26  E-value=5.9e-11  Score=114.79  Aligned_cols=59  Identities=17%  Similarity=0.129  Sum_probs=48.1

Q ss_pred             EEeecCCc---chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (416)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (416)
                      ++++.+|.   ..+.++|.+.+++.|++|+++++|++|..+  ++. ++|++.+| +++||+||+.
T Consensus       143 ~~~~~~~~~~~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~--~~~-~~V~t~~g-~i~a~~VV~A  204 (381)
T 3nyc_A          143 TYDPTGADIDTDALHQGYLRGIRRNQGQVLCNHEALEIRRV--DGA-WEVRCDAG-SYRAAVLVNA  204 (381)
T ss_dssp             EEETTCEEECHHHHHHHHHHHHHHTTCEEESSCCCCEEEEE--TTE-EEEECSSE-EEEESEEEEC
T ss_pred             EEcCCCceECHHHHHHHHHHHHHHCCCEEEcCCEEEEEEEe--CCe-EEEEeCCC-EEEcCEEEEC
Confidence            44555552   578899999999999999999999999987  554 78887666 8999999954

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=99.20  E-value=8e-12  Score=114.12  Aligned_cols=47  Identities=26%  Similarity=0.322  Sum_probs=43.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhh
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIAD   68 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~   68 (416)
                      ++||+|||||++||+||+.|+++|++|+||||++++||++.+....+
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~GG~~~~~~~~~   48 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMSSKRSDA   48 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEEEETT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccccCC
Confidence            48999999999999999999999999999999999999998866543

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=99.19  E-value=6.7e-10  Score=112.07  Aligned_cols=42  Identities=26%  Similarity=0.383  Sum_probs=39.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (416)
                      .++||||||+|++||+||+.|+++|++|+||||.+.+||.+.
T Consensus        40 ~~~DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~~~GG~s~   81 (510)
T 4at0_A           40 YEADVVVAGYGIAGVAASIEAARAGADVLVLERTSGWGGATA   81 (510)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGG
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcch
Confidence            469999999999999999999999999999999999998753

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.18  E-value=1.4e-10  Score=113.79  Aligned_cols=58  Identities=10%  Similarity=0.113  Sum_probs=48.3

Q ss_pred             EEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 014883          271 LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (416)
Q Consensus       271 ~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~  332 (416)
                      ..++......+.+.|.+.+++.|++|+++++|++|..+  ++. +.|++.+| +++||.||+
T Consensus       124 ~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~--~~~-~~V~~~~g-~i~ad~VIl  181 (417)
T 3v76_A          124 QLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERT--ASG-FRVTTSAG-TVDAASLVV  181 (417)
T ss_dssp             EEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEE--TTE-EEEEETTE-EEEESEEEE
T ss_pred             EEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEe--CCE-EEEEECCc-EEEeeEEEE
Confidence            34666667789999999999999999999999999886  443 67887777 899999994

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.18  E-value=2.8e-10  Score=111.10  Aligned_cols=60  Identities=25%  Similarity=0.346  Sum_probs=49.7

Q ss_pred             EEeecCCcc---hHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883          271 LIYPIYGQG---ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (416)
Q Consensus       271 ~~~p~gG~~---~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (416)
                      .+++.+|.-   .+.++|.+.+++.|++|+++++|++|..+  ++++++|++.+| +++||.||..
T Consensus       163 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~--~~~~~~v~~~~g-~~~a~~vV~a  225 (405)
T 2gag_B          163 TWQPRAGIAKHDHVAWAFARKANEMGVDIIQNCEVTGFIKD--GEKVTGVKTTRG-TIHAGKVALA  225 (405)
T ss_dssp             EEETTCBBCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEES--SSBEEEEEETTC-CEEEEEEEEC
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHCCCEEEcCCeEEEEEEe--CCEEEEEEeCCc-eEECCEEEEC
Confidence            456666654   78889999899999999999999999986  677788988777 7999999943

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=99.17  E-value=1.4e-10  Score=115.01  Aligned_cols=59  Identities=20%  Similarity=0.345  Sum_probs=49.8

Q ss_pred             EeecCC-cchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 014883          272 IYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (416)
Q Consensus       272 ~~p~gG-~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~  332 (416)
                      .+|..+ ...+.++|.+.+++.|++|+++++|++|..+  ++++++|++.+|++++||.||+
T Consensus       126 ~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~--~~~v~~V~~~~G~~i~Ad~VVl  185 (447)
T 2i0z_A          126 MFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYE--NGQTKAVILQTGEVLETNHVVI  185 (447)
T ss_dssp             EEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE--TTEEEEEEETTCCEEECSCEEE
T ss_pred             EECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEec--CCcEEEEEECCCCEEECCEEEE
Confidence            456443 5688899999898999999999999999987  6777889988888899999994

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=99.17  E-value=3.3e-10  Score=118.49  Aligned_cols=59  Identities=17%  Similarity=0.180  Sum_probs=48.0

Q ss_pred             EEeecCCc---chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCc-EEEcCEEEE
Q 014883          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ-DILSHKLVL  332 (416)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~-~i~Ad~VI~  332 (416)
                      .+++.+|.   ..+.++|.+.+++.|++|+++++|++|+.+  +++ +.|++.+|+ +++||+||+
T Consensus       401 ~~~p~~g~v~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~--~~~-v~V~t~~G~~~i~Ad~VVl  463 (689)
T 3pvc_A          401 IHYPAGGWLCPSDLTHALMMLAQQNGMTCHYQHELQRLKRI--DSQ-WQLTFGQSQAAKHHATVIL  463 (689)
T ss_dssp             EEETTCEEECHHHHHHHHHHHHHHTTCEEEESCCEEEEEEC--SSS-EEEEEC-CCCCEEESEEEE
T ss_pred             EEecCCeEECHHHHHHHHHHHHHhCCCEEEeCCeEeEEEEe--CCe-EEEEeCCCcEEEECCEEEE
Confidence            45566664   678899999999999999999999999987  444 578888887 899999994

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.16  E-value=7.4e-10  Score=107.26  Aligned_cols=60  Identities=25%  Similarity=0.244  Sum_probs=47.9

Q ss_pred             EEeecCCc---chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (416)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (416)
                      .+.+..|.   ..+.++|.+.+++.|++|+.+++|++|..+  ++++++|++.+| +++||.||..
T Consensus       138 ~~~~~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~--~~~v~gv~~~~g-~i~a~~VV~A  200 (382)
T 1y56_B          138 SWNPTDGKADPFEATTAFAVKAKEYGAKLLEYTEVKGFLIE--NNEIKGVKTNKG-IIKTGIVVNA  200 (382)
T ss_dssp             EEETTCCEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEES--SSBEEEEEETTE-EEECSEEEEC
T ss_pred             EEcCCCeeECHHHHHHHHHHHHHHCCCEEECCceEEEEEEE--CCEEEEEEECCc-EEECCEEEEC
Confidence            33444442   578888989899999999999999999986  667767887776 8999999953

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=99.11  E-value=2.8e-09  Score=108.89  Aligned_cols=59  Identities=22%  Similarity=0.193  Sum_probs=47.6

Q ss_pred             EeecCC---cchHHHHHHHHHHhcCcEEEcCCceeEEEEecCC-CcEEEEEeC--CCc--EEEcCEEEE
Q 014883          272 IYPIYG---QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNS-GSYKGVRLA--SGQ--DILSHKLVL  332 (416)
Q Consensus       272 ~~p~gG---~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~-g~~~gV~l~--~G~--~i~Ad~VI~  332 (416)
                      .++.+|   ...+.+.|.+.+++.|++|+++++|++|+.+  + +++++|++.  +|+  +++||.||+
T Consensus       240 ~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~--~~g~v~Gv~~~~~~g~~~~i~A~~VVl  306 (566)
T 1qo8_A          240 HRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVN--DDHSVVGAVVHGKHTGYYMIGAKSVVL  306 (566)
T ss_dssp             EECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEEC--TTSBEEEEEEEETTTEEEEEEEEEEEE
T ss_pred             eecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEC--CCCcEEEEEEEeCCCcEEEEEcCEEEE
Confidence            345554   3578899999999999999999999999987  5 888888765  675  689999984

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=99.11  E-value=5e-09  Score=107.18  Aligned_cols=53  Identities=17%  Similarity=0.243  Sum_probs=44.3

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeC--CCc--EEEcCEEEE
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA--SGQ--DILSHKLVL  332 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~--~G~--~i~Ad~VI~  332 (416)
                      ..+.+.|.+.+++.|++|+++++|++|..+ ++|++++|++.  +|+  +++||.||+
T Consensus       255 ~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~-~~g~v~Gv~~~~~~g~~~~i~a~~VVl  311 (571)
T 1y0p_A          255 AHVVQVLYDNAVKRNIDLRMNTRGIEVLKD-DKGTVKGILVKGMYKGYYWVKADAVIL  311 (571)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEEC-TTSCEEEEEEEETTTEEEEEECSEEEE
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEeeEeEEc-CCCeEEEEEEEeCCCcEEEEECCeEEE
Confidence            578899999999999999999999999986 13888887765  575  689999994

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=99.10  E-value=6.8e-10  Score=112.22  Aligned_cols=53  Identities=23%  Similarity=0.269  Sum_probs=45.8

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (416)
                      ..+.++|.+.+++.|++|+++++|++|..+  ++++++|++.+|+++.||.||+.
T Consensus       220 ~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~--~~~v~gV~l~~G~~i~Ad~VVlA  272 (549)
T 3nlc_A          220 VTMIEKMRATIIELGGEIRFSTRVDDLHME--DGQITGVTLSNGEEIKSRHVVLA  272 (549)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCCEEEEEES--SSBEEEEEETTSCEEECSCEEEC
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEEe--CCEEEEEEECCCCEEECCEEEEC
Confidence            456777878888899999999999999986  67788899999999999999943

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=99.07  E-value=2.3e-09  Score=114.48  Aligned_cols=60  Identities=25%  Similarity=0.273  Sum_probs=49.2

Q ss_pred             EEeecCCc---chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (416)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (416)
                      ++.+..|.   ..+.++|.+.+++.|++|+.+++|++|..+  ++++++|++.+| +++||+||+.
T Consensus       140 ~~~~~~g~v~p~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~--~~~v~~V~t~~G-~i~Ad~VV~A  202 (830)
T 1pj5_A          140 LHVPSDGLASAARAVQLLIKRTESAGVTYRGSTTVTGIEQS--GGRVTGVQTADG-VIPADIVVSC  202 (830)
T ss_dssp             EEETTCEEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE--TTEEEEEEETTE-EEECSEEEEC
T ss_pred             EEECCCceEcHHHHHHHHHHHHHHcCCEEECCceEEEEEEe--CCEEEEEEECCc-EEECCEEEEC
Confidence            44555553   378899999999999999999999999987  677778887666 8999999943

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=99.02  E-value=2e-09  Score=106.76  Aligned_cols=52  Identities=19%  Similarity=0.324  Sum_probs=44.1

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEE---------------ecCCCcEEEEEeCCCcEE--EcCEEEEC
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLT---------------DQNSGSYKGVRLASGQDI--LSHKLVLD  333 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~---------------~~~~g~~~gV~l~~G~~i--~Ad~VI~~  333 (416)
                      ..+.++|.+.+++.|++|+.+++|++|..               +  ++++++|++.+| ++  +||.||+.
T Consensus       181 ~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~--~~~v~~V~t~~g-~i~~~Ad~VV~A  249 (448)
T 3axb_A          181 EKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQ--EARASAAVLSDG-TRVEVGEKLVVA  249 (448)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTS--CEEEEEEEETTS-CEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccC--CCceEEEEeCCC-EEeecCCEEEEC
Confidence            47889999999999999999999999987               4  566678887777 68  99999943

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=98.95  E-value=3.5e-08  Score=100.87  Aligned_cols=52  Identities=23%  Similarity=0.319  Sum_probs=43.6

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCC-CcEEEEEeC--CCc--EEEcCEEEE
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNS-GSYKGVRLA--SGQ--DILSHKLVL  332 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~-g~~~gV~l~--~G~--~i~Ad~VI~  332 (416)
                      ..+.+.|.+.+++.|++|+++++|++|+.+  + |++++|++.  +|+  +++||.||+
T Consensus       255 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~--~~g~v~GV~~~~~~G~~~~i~A~~VVl  311 (572)
T 1d4d_A          255 AHVAQVLWDNAVKRGTDIRLNSRVVRILED--ASGKVTGVLVKGEYTGYYVIKADAVVI  311 (572)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEEC----CCEEEEEEEETTTEEEEEECSEEEE
T ss_pred             HHHHHHHHHHHHHcCCeEEecCEEEEEEEC--CCCeEEEEEEEeCCCcEEEEEcCEEEE
Confidence            478899999999999999999999999886  5 888888765  565  689999994

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=98.94  E-value=4.3e-10  Score=109.01  Aligned_cols=42  Identities=26%  Similarity=0.403  Sum_probs=38.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (416)
                      |++|||||||||++||+||+.|+++|++|+|+|+++.+|...
T Consensus         2 Me~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~~   43 (397)
T 3oz2_A            2 METYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPV   43 (397)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCC
Confidence            668999999999999999999999999999999999887643

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.81  E-value=2.4e-09  Score=101.60  Aligned_cols=43  Identities=14%  Similarity=0.088  Sum_probs=39.2

Q ss_pred             cccEEEECCChhHHHHHHHHhh--CCCeEEEEccCCCCCCccccc
Q 014883           22 AFDLIVIGTGLPESVISAAASA--SGKSVLHLDPNPFYGSHFSSL   64 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~--~G~~V~vlE~~~~~GG~~~s~   64 (416)
                      ++||+|||||++||+||++|++  .|++|+|+|+++++||.+...
T Consensus        65 ~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~~~~  109 (326)
T 3fpz_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLG  109 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceEEeC
Confidence            5799999999999999999975  599999999999999988653

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.75  E-value=5.4e-09  Score=98.02  Aligned_cols=42  Identities=21%  Similarity=0.177  Sum_probs=35.5

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (416)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (416)
                      .|++|||||||||++||+||.+|+++|++|+|+|++ .+||..
T Consensus         3 ~M~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~-~~gg~~   44 (304)
T 4fk1_A            3 AMKYIDCAVIGAGPAGLNASLVLGRARKQIALFDNN-TNRNRV   44 (304)
T ss_dssp             ---CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECS-CCGGGG
T ss_pred             CCCCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCC-CCCCee
Confidence            477899999999999999999999999999999997 456643

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.74  E-value=5.6e-09  Score=98.96  Aligned_cols=59  Identities=8%  Similarity=0.070  Sum_probs=40.1

Q ss_pred             CCCcCCCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEcc----CCCCCCccccc
Q 014883            6 SESELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDP----NPFYGSHFSSL   64 (416)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~----~~~~GG~~~s~   64 (416)
                      ...+++.|+-++.+..++||+|||||++||+||..|+++|++|+|+|+    +..+||.+...
T Consensus         6 ~~~~~~~~~~~~~~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~   68 (338)
T 3itj_A            6 HHHHHSSGLVPRGSHVHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTT   68 (338)
T ss_dssp             ---------------CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGS
T ss_pred             cccccccCCCCCCCCCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccc
Confidence            334455555445555679999999999999999999999999999999    45899987653

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.71  E-value=9.5e-09  Score=96.61  Aligned_cols=41  Identities=20%  Similarity=0.383  Sum_probs=37.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      +|||||||||.+||+||.+|++.|++|+|+|++ .+||.|..
T Consensus         6 ~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~-~~gG~~~~   46 (312)
T 4gcm_A            6 DFDIAIIGAGPAGMTAAVYASRANLKTVMIERG-IPGGQMAN   46 (312)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGGG
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCCeeec
Confidence            699999999999999999999999999999984 78887754

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.67  E-value=1.4e-08  Score=95.41  Aligned_cols=36  Identities=14%  Similarity=0.187  Sum_probs=33.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      .+.|||||||||.+||+||..|++.|++|+|+|++.
T Consensus         2 ~~~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~   37 (314)
T 4a5l_A            2 SNIHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFM   37 (314)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            446999999999999999999999999999999975

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.63  E-value=1.4e-08  Score=101.91  Aligned_cols=49  Identities=31%  Similarity=0.414  Sum_probs=39.8

Q ss_pred             CCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccccc
Q 014883           15 YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (416)
Q Consensus        15 ~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~   64 (416)
                      |++.| .+|||+|||||.+||+||..|++.|++|+|+|+++.+||.|...
T Consensus        19 ~~~~m-~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~~~~~   67 (491)
T 3urh_A           19 YFQSM-MAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCLNV   67 (491)
T ss_dssp             --------CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHH
T ss_pred             chhhc-ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccc
Confidence            44444 35999999999999999999999999999999999999987654

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=98.62  E-value=1.4e-08  Score=99.09  Aligned_cols=44  Identities=25%  Similarity=0.255  Sum_probs=40.0

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (416)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (416)
                      ||.++||||||||++||+||+.|+++|.+|+|+|+++.+|+.+.
T Consensus         1 MM~~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~   44 (401)
T 2gqf_A            1 MSQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKIL   44 (401)
T ss_dssp             CEEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHH
T ss_pred             CCCCCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcE
Confidence            35679999999999999999999999999999999999987653

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=98.61  E-value=2.1e-08  Score=98.03  Aligned_cols=45  Identities=18%  Similarity=0.065  Sum_probs=34.9

Q ss_pred             CCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           15 YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        15 ~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      -++-.++.+||||||||++||++|+.|+++|++|+|+|+++.++.
T Consensus        16 ~~~~~~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~   60 (407)
T 3rp8_A           16 ENLYFQGHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKP   60 (407)
T ss_dssp             -------CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC--
T ss_pred             CcccCCCCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCC
Confidence            344445679999999999999999999999999999999987653

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=98.60  E-value=2.7e-08  Score=94.82  Aligned_cols=44  Identities=25%  Similarity=0.285  Sum_probs=41.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      |+++||+|||||++||++|..|++.|++|+|+|+++.+||.+..
T Consensus         1 m~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~   44 (357)
T 4a9w_A            1 MDSVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQH   44 (357)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGG
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccC
Confidence            45689999999999999999999999999999999999998764

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.60  E-value=1.4e-06  Score=84.95  Aligned_cols=55  Identities=16%  Similarity=0.233  Sum_probs=48.1

Q ss_pred             CcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883          277 GQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (416)
Q Consensus       277 G~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (416)
                      ...++.+.+.+.+++.|.++++++.|++|..+  ++++.+|++.+|+++.||.||+.
T Consensus       182 ~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~--~~~v~~V~~~dG~~i~aD~Vv~a  236 (404)
T 3fg2_P          182 VTPEISSYFHDRHSGAGIRMHYGVRATEIAAE--GDRVTGVVLSDGNTLPCDLVVVG  236 (404)
T ss_dssp             SCHHHHHHHHHHHHHTTCEEECSCCEEEEEEE--TTEEEEEEETTSCEEECSEEEEC
T ss_pred             cCHHHHHHHHHHHHhCCcEEEECCEEEEEEec--CCcEEEEEeCCCCEEEcCEEEEC
Confidence            34578888888889999999999999999876  67778899999999999999954

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=98.60  E-value=3.1e-08  Score=96.39  Aligned_cols=59  Identities=22%  Similarity=0.214  Sum_probs=44.9

Q ss_pred             EEeecCCc---chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (416)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (416)
                      ++.+.+|.   ..+.++|.+.+++.|++|+++++|++|..+  ++. +.|++.+| +++||.||+.
T Consensus       142 ~~~~~~g~~~~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~--~~~-v~v~t~~g-~i~a~~VV~A  203 (397)
T 2oln_A          142 FLQPDGGTIDVRGTLAALFTLAQAAGATLRAGETVTELVPD--ADG-VSVTTDRG-TYRAGKVVLA  203 (397)
T ss_dssp             EEETTCEEEEHHHHHHHHHHHHHHTTCEEEESCCEEEEEEE--TTE-EEEEESSC-EEEEEEEEEC
T ss_pred             EEcCCCCEEcHHHHHHHHHHHHHHcCCEEECCCEEEEEEEc--CCe-EEEEECCC-EEEcCEEEEc
Confidence            34555553   467788888888899999999999999986  444 45776554 8999999943

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=98.59  E-value=3.7e-08  Score=100.81  Aligned_cols=44  Identities=20%  Similarity=0.187  Sum_probs=37.9

Q ss_pred             CCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883           17 PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (416)
Q Consensus        17 ~~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (416)
                      +.+|..+||||||||++||++|+.|+++|++|+|+|+++..++.
T Consensus        18 ~~~M~~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~~   61 (591)
T 3i3l_A           18 GSHMTRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYR   61 (591)
T ss_dssp             --CCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCCC
T ss_pred             cCcCCCCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCCc
Confidence            34466799999999999999999999999999999999766543

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.59  E-value=2.3e-08  Score=100.17  Aligned_cols=52  Identities=21%  Similarity=0.280  Sum_probs=43.7

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (416)
                      ..+.+.+.+.+++.|.+|+++++|++|..+  +++ +.|++.+|+++.||.||+.
T Consensus       232 ~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~--~~~-v~v~~~~g~~i~aD~Vi~A  283 (484)
T 3o0h_A          232 YDLRQLLNDAMVAKGISIIYEATVSQVQST--ENC-YNVVLTNGQTICADRVMLA  283 (484)
T ss_dssp             HHHHHHHHHHHHHHTCEEESSCCEEEEEEC--SSS-EEEEETTSCEEEESEEEEC
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEee--CCE-EEEEECCCcEEEcCEEEEe
Confidence            467788888888899999999999999875  444 4788889999999999943

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.59  E-value=2.4e-08  Score=95.77  Aligned_cols=45  Identities=18%  Similarity=0.254  Sum_probs=40.3

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      ++..+||+|||||++||+||..|++.|++|+|+|+++.+||.+..
T Consensus        11 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~   55 (360)
T 3ab1_A           11 HHDMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAA   55 (360)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHH
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcccc
Confidence            455799999999999999999999999999999999999987753

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.58  E-value=2.2e-08  Score=99.77  Aligned_cols=44  Identities=23%  Similarity=0.257  Sum_probs=41.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      +.+|||+|||||.+||+||..|++.|++|+++|+++.+||.|..
T Consensus         2 ~~~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~   45 (466)
T 3l8k_A            2 SLKYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLY   45 (466)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHH
T ss_pred             CccceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccc
Confidence            34699999999999999999999999999999999999999874

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.58  E-value=4.7e-08  Score=102.14  Aligned_cols=60  Identities=15%  Similarity=0.173  Sum_probs=47.6

Q ss_pred             CCCCCCcCCCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883            3 GNESESELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      |.|.+..|..+++++. ...+||||||||++||+||..|++.|++|+|+|+++++||.+..
T Consensus       373 g~e~~~~~~~~~~~~~-~~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~~  432 (690)
T 3k30_A          373 GEEWRRGWHPERIRAK-ESDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQ  432 (690)
T ss_dssp             TTTTTTCCCSSCCCCC-SSCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHHH
T ss_pred             CcccccccCccccCcc-cccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEeee
Confidence            4444444443334333 45689999999999999999999999999999999999998764

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.57  E-value=6.9e-08  Score=90.77  Aligned_cols=41  Identities=15%  Similarity=0.149  Sum_probs=38.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCCCCccc
Q 014883           22 AFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFS   62 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~GG~~~   62 (416)
                      ++||+|||+|++||+||+.|+++  |++|+|+|+++.+||.++
T Consensus        65 ~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~  107 (326)
T 2gjc_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSW  107 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTT
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCcccccccc
Confidence            46999999999999999999999  999999999999998554

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.57  E-value=3e-08  Score=94.04  Aligned_cols=44  Identities=20%  Similarity=0.344  Sum_probs=40.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      +.++||+|||||++||+||..|++.|++|+|+|+++.+||.+..
T Consensus         3 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~   46 (335)
T 2zbw_A            3 ADHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTA   46 (335)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHH
T ss_pred             CCcCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeec
Confidence            45799999999999999999999999999999999999987753

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=98.57  E-value=4.5e-08  Score=94.54  Aligned_cols=59  Identities=17%  Similarity=0.208  Sum_probs=47.2

Q ss_pred             EEeecCCc---chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (416)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (416)
                      ++++.+|.   ..+.++|.+.+++.|++|+++++|++|..+  ++++ +|++.+| +++||.||+.
T Consensus       153 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~--~~~~-~v~~~~g-~~~a~~vV~A  214 (382)
T 1ryi_A          153 SFIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERD--GEAL-FIKTPSG-DVWANHVVVA  214 (382)
T ss_dssp             EEETTCCBCCHHHHHHHHHHHHHHTTCEEETTCCCCEEECS--SSSE-EEEETTE-EEEEEEEEEC
T ss_pred             EEeCCCeEEcHHHHHHHHHHHHHHCCCEEEcCCcEEEEEEE--CCEE-EEEcCCc-eEEcCEEEEC
Confidence            44556564   568899999999999999999999999876  5554 7887666 8999999943

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=98.56  E-value=3.7e-08  Score=91.48  Aligned_cols=41  Identities=17%  Similarity=0.191  Sum_probs=37.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhC-CCeEEEEccCCCCCCcc
Q 014883           21 TAFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFYGSHF   61 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~-G~~V~vlE~~~~~GG~~   61 (416)
                      .++||||||||++||+||..|++. |.+|+|+|+++.+||.+
T Consensus        38 ~~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~   79 (284)
T 1rp0_A           38 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGA   79 (284)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTT
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCce
Confidence            458999999999999999999997 99999999999998754

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=98.53  E-value=4.4e-08  Score=99.49  Aligned_cols=47  Identities=17%  Similarity=0.265  Sum_probs=41.3

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccC
Q 014883           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS   65 (416)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~   65 (416)
                      .+.++||||||||++|++||..|++.|++|+|+|+++.+||.+....
T Consensus        18 ~~~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~   64 (549)
T 4ap3_A           18 GTTSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNR   64 (549)
T ss_dssp             --CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCC
T ss_pred             CCCCCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCC
Confidence            34578999999999999999999999999999999999999776443

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=98.53  E-value=5.2e-08  Score=99.25  Aligned_cols=60  Identities=27%  Similarity=0.356  Sum_probs=48.0

Q ss_pred             EEeecCC--cchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCC---C--cEEEcCEEEE
Q 014883          271 LIYPIYG--QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS---G--QDILSHKLVL  332 (416)
Q Consensus       271 ~~~p~gG--~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~---G--~~i~Ad~VI~  332 (416)
                      +.|+.+-  ...+..+|++.+++.|++|+++++|++|..+  ++++++|++.+   |  .+++||.||.
T Consensus       160 ~~~~dg~vd~~~l~~~L~~~a~~~G~~i~~~~~V~~l~~~--~g~v~gV~~~d~~tg~~~~i~A~~VV~  226 (561)
T 3da1_A          160 GIYVEYRTDDARLTLEIMKEAVARGAVALNYMKVESFIYD--QGKVVGVVAKDRLTDTTHTIYAKKVVN  226 (561)
T ss_dssp             EEEEEEECCHHHHHHHHHHHHHHTTCEEEESEEEEEEEEE--TTEEEEEEEEETTTCCEEEEEEEEEEE
T ss_pred             EEecCceEcHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEc--CCeEEEEEEEEcCCCceEEEECCEEEE
Confidence            4455442  2578899999999999999999999999987  77778888754   3  4789999994

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=98.52  E-value=6.3e-08  Score=94.71  Aligned_cols=43  Identities=16%  Similarity=0.197  Sum_probs=36.9

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCe-EEEEccCCCCCCcc
Q 014883           19 EPTAFDLIVIGTGLPESVISAAASASGKS-VLHLDPNPFYGSHF   61 (416)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~-V~vlE~~~~~GG~~   61 (416)
                      ||..+||||||||++||++|..|+++|.+ |+|+|+++.++...
T Consensus         1 M~~~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~g   44 (410)
T 3c96_A            1 MSEPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLG   44 (410)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCS
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcccce
Confidence            35578999999999999999999999999 99999998876543

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.52  E-value=6.6e-08  Score=91.03  Aligned_cols=44  Identities=27%  Similarity=0.385  Sum_probs=38.6

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      |+.++||+|||||++||+||..|+++|++|+|+|+ ..+||.+..
T Consensus        13 m~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~gg~~~~   56 (319)
T 3cty_A           13 KERDFDVVIVGAGAAGFSAAVYAARSGFSVAILDK-AVAGGLTAE   56 (319)
T ss_dssp             -CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SSTTGGGGG
T ss_pred             ccCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeC-CCCCccccc
Confidence            34469999999999999999999999999999999 578887654

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=98.52  E-value=8.2e-08  Score=92.21  Aligned_cols=40  Identities=18%  Similarity=0.133  Sum_probs=35.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      ..++||||||||++||++|+.|+++|++|+|||++...+|
T Consensus         4 ~~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~~~~g   43 (363)
T 1c0p_A            4 HSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDV   43 (363)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTCT
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccCCCCc
Confidence            3578999999999999999999999999999999874443

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.52  E-value=7.5e-08  Score=90.90  Aligned_cols=43  Identities=19%  Similarity=0.315  Sum_probs=39.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      +.++||+|||||++||+||..|++.|++|+|+|++ .+||.+..
T Consensus         6 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~   48 (325)
T 2q7v_A            6 AHDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-MPGGQIAW   48 (325)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGGG
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-CCCccccc
Confidence            45689999999999999999999999999999999 78988764

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=98.52  E-value=7.9e-08  Score=95.32  Aligned_cols=48  Identities=21%  Similarity=0.206  Sum_probs=41.9

Q ss_pred             CCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883           15 YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (416)
Q Consensus        15 ~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (416)
                      .++.....+||+|||||++||+||..|++.|++|+|+|+++++||...
T Consensus       115 ~~~~~~~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~  162 (456)
T 2vdc_G          115 RTPSRELGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLV  162 (456)
T ss_dssp             CCSCSSCCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHH
T ss_pred             CCCcCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeee
Confidence            333445568999999999999999999999999999999999999754

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.51  E-value=6.3e-08  Score=91.60  Aligned_cols=41  Identities=12%  Similarity=0.103  Sum_probs=38.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCCCCccc
Q 014883           22 AFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFS   62 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~GG~~~   62 (416)
                      ++||||||||++||+||+.|+++  |++|+|+|+++.+||.++
T Consensus        79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~  121 (344)
T 3jsk_A           79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAW  121 (344)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTT
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccc
Confidence            58999999999999999999997  999999999999987554

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=98.51  E-value=6.8e-08  Score=92.92  Aligned_cols=58  Identities=19%  Similarity=0.293  Sum_probs=45.0

Q ss_pred             EEeecCCc---chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 014883          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (416)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~  332 (416)
                      ++.+..|.   ..+.++|.+.++..|++|+.+++|++|..+  ++. +.|++.+| +++||+||+
T Consensus       138 ~~~~~~g~~~~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~--~~~-~~v~~~~g-~~~a~~vV~  198 (372)
T 2uzz_A          138 LFETDSGFLRSELAIKTWIQLAKEAGCAQLFNCPVTAIRHD--DDG-VTIETADG-EYQAKKAIV  198 (372)
T ss_dssp             EEESSCEEEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEEC--SSS-EEEEESSC-EEEEEEEEE
T ss_pred             EEeCCCcEEcHHHHHHHHHHHHHHCCCEEEcCCEEEEEEEc--CCE-EEEEECCC-eEEcCEEEE
Confidence            33444443   478889999889999999999999999986  444 56877666 599999994

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.49  E-value=5.7e-08  Score=96.68  Aligned_cols=42  Identities=31%  Similarity=0.317  Sum_probs=38.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      .+|||||||||++||+||..|+++|++|+|+|+ +.+||.|..
T Consensus         4 ~~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~~   45 (463)
T 4dna_A            4 FDYDLFVIGGGSGGVRSGRLAAALGKKVAIAEE-FRYGGTCVI   45 (463)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTTTCCEEEEES-SCTTHHHHH
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhCCCEEEEEeC-CCCCCcccc
Confidence            369999999999999999999999999999999 789997754

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=98.49  E-value=9.2e-08  Score=93.67  Aligned_cols=38  Identities=26%  Similarity=0.392  Sum_probs=35.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (416)
                      .++||||||||++||++|+.|+++|++|+|+|+++.++
T Consensus         4 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~~   41 (421)
T 3nix_A            4 EKVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPR   41 (421)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSC
T ss_pred             ccCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCC
Confidence            45899999999999999999999999999999997543

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.49  E-value=5.1e-08  Score=92.05  Aligned_cols=41  Identities=22%  Similarity=0.332  Sum_probs=39.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (416)
                      .+||+|||||++||+||..|++.|++|+|+|+++.+||.+.
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~   47 (332)
T 3lzw_A            7 VYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLS   47 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHH
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceeh
Confidence            58999999999999999999999999999999999999885

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.49  E-value=9.4e-08  Score=89.72  Aligned_cols=40  Identities=18%  Similarity=0.275  Sum_probs=37.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      ++||+|||||++||+||..|+++|++|+|+|++  +||.+..
T Consensus        15 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~gg~~~~   54 (323)
T 3f8d_A           15 KFDVIIVGLGPAAYGAALYSARYMLKTLVIGET--PGGQLTE   54 (323)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--TTGGGGG
T ss_pred             ccCEEEECccHHHHHHHHHHHHCCCcEEEEecc--CCCeecc
Confidence            589999999999999999999999999999998  8988765

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.48  E-value=8e-08  Score=97.12  Aligned_cols=49  Identities=31%  Similarity=0.395  Sum_probs=43.2

Q ss_pred             CCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           15 YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        15 ~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      ..+.++.++||||||||++|++||..|++.|++|+|+|+++.+||.|..
T Consensus        36 ~~~~~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~   84 (523)
T 1mo9_A           36 VDENDPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPH   84 (523)
T ss_dssp             CCTTCCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHH
T ss_pred             cCCCCCCcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCcccc
Confidence            3344556799999999999999999999999999999999989998764

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=98.48  E-value=1.1e-07  Score=92.70  Aligned_cols=41  Identities=12%  Similarity=0.122  Sum_probs=37.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (416)
                      +..+||+|||||++||++|..|+++|++|+|+|+++.++.+
T Consensus        24 ~~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~   64 (398)
T 2xdo_A           24 LSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREAR   64 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCC
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCcccc
Confidence            45689999999999999999999999999999999877654

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.48  E-value=1.1e-07  Score=94.03  Aligned_cols=44  Identities=23%  Similarity=0.252  Sum_probs=40.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCC--eEEEEccCCCCCCcccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGK--SVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~--~V~vlE~~~~~GG~~~s   63 (416)
                      +..+||+|||||++||+||..|++.|+  +|+|+|+++.+||.+..
T Consensus         4 ~~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~   49 (447)
T 2gv8_A            4 PTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNY   49 (447)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSC
T ss_pred             CCCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecC
Confidence            346899999999999999999999999  99999999999997754

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=98.47  E-value=1.2e-07  Score=91.68  Aligned_cols=51  Identities=18%  Similarity=0.220  Sum_probs=42.0

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (416)
                      ..+.++|.+.++..|++|+.+++|++|..+  ++. +.|++.+| +++||.||+.
T Consensus       150 ~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~--~~~-~~v~~~~g-~~~a~~vV~A  200 (389)
T 2gf3_A          150 ENCIRAYRELAEARGAKVLTHTRVEDFDIS--PDS-VKIETANG-SYTADKLIVS  200 (389)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEC--SSC-EEEEETTE-EEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHCCCEEEcCcEEEEEEec--CCe-EEEEeCCC-EEEeCEEEEe
Confidence            578899999999999999999999999986  343 56776555 7999999943

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=98.47  E-value=1e-07  Score=96.78  Aligned_cols=43  Identities=21%  Similarity=0.329  Sum_probs=40.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (416)
                      +.++||||||||++||+||..|+++|++|+|+|+++.+||.+.
T Consensus        14 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~   56 (542)
T 1w4x_A           14 PEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWY   56 (542)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHH
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccc
Confidence            4579999999999999999999999999999999999999775

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.47  E-value=1.2e-07  Score=91.70  Aligned_cols=41  Identities=15%  Similarity=0.066  Sum_probs=36.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (416)
                      |..+||||||||++||++|..|+++|++|+|+|+++.+++.
T Consensus         9 m~~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~   49 (379)
T 3alj_A            9 GKTRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAF   49 (379)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCC
Confidence            44689999999999999999999999999999999988753

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=98.46  E-value=7.7e-08  Score=97.48  Aligned_cols=47  Identities=17%  Similarity=0.164  Sum_probs=41.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHh-hCCCeEEEEccCCCCCCcccccCh
Q 014883           20 PTAFDLIVIGTGLPESVISAAAS-ASGKSVLHLDPNPFYGSHFSSLSI   66 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La-~~G~~V~vlE~~~~~GG~~~s~~~   66 (416)
                      +.++||||||||++||+||..|+ +.|++|+|+|+++.+||.+....+
T Consensus         6 ~~~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~y   53 (540)
T 3gwf_A            6 THTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRY   53 (540)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCC
Confidence            45689999999999999999999 999999999999999997764433

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.46  E-value=9.3e-08  Score=90.75  Aligned_cols=47  Identities=19%  Similarity=0.251  Sum_probs=39.6

Q ss_pred             CCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           16 PPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        16 ~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      ++.++..+||+|||||++||+||..|++.|++|+|+|++ .+||.+..
T Consensus         8 ~~~~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~   54 (335)
T 2a87_A            8 DRAHHPVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGT-SFGGALMT   54 (335)
T ss_dssp             --CCCCCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCS-SCSCGGGS
T ss_pred             ccccCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceec
Confidence            334556799999999999999999999999999999975 78887643

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=98.46  E-value=1.2e-07  Score=95.26  Aligned_cols=51  Identities=20%  Similarity=0.102  Sum_probs=42.8

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeC---CCc--EEEcCEEEE
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SGQ--DILSHKLVL  332 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~---~G~--~i~Ad~VI~  332 (416)
                      ..+..+|.+.+++.|++|+.+++|++|..+  + ++++|++.   +|+  +++||.||.
T Consensus       149 ~~l~~~l~~~a~~~Gv~i~~~~~V~~l~~~--~-~~~~V~~~d~~~G~~~~i~A~~VV~  204 (501)
T 2qcu_A          149 ARLVLANAQMVVRKGGEVLTRTRATSARRE--N-GLWIVEAEDIDTGKKYSWQARGLVN  204 (501)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSEEEEEEEEE--T-TEEEEEEEETTTCCEEEEEESCEEE
T ss_pred             HHHHHHHHHHHHHcCCEEEcCcEEEEEEEe--C-CEEEEEEEECCCCCEEEEECCEEEE
Confidence            578889999999999999999999999986  4 56788763   575  789999994

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.45  E-value=1.1e-07  Score=94.84  Aligned_cols=41  Identities=22%  Similarity=0.239  Sum_probs=37.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (416)
                      .+|||+|||||.+||+||..|++.|++|+|+|+++.+||..
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~gG~~   42 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKT   42 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSB
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccCCCC
Confidence            46999999999999999999999999999999998666554

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.43  E-value=1.3e-07  Score=84.94  Aligned_cols=35  Identities=17%  Similarity=0.316  Sum_probs=33.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      .+|||||||||++||.||..|++.|.+|+|+|++.
T Consensus         2 ~~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~   36 (232)
T 2cul_A            2 AAYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSL   36 (232)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            46899999999999999999999999999999984

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.43  E-value=8.7e-08  Score=95.75  Aligned_cols=44  Identities=18%  Similarity=0.292  Sum_probs=39.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~   64 (416)
                      +.+|||||||||.+||+||..|++.|++|+|+|++ .+||.|...
T Consensus        18 ~~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~-~~GG~~~~~   61 (478)
T 3dk9_A           18 VASYDYLVIGGGSGGLASARRAAELGARAAVVESH-KLGGTCVNV   61 (478)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHH
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCccccc
Confidence            45799999999999999999999999999999976 889987543

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.43  E-value=1.1e-07  Score=91.35  Aligned_cols=44  Identities=18%  Similarity=0.292  Sum_probs=39.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCC-eEEEEccCCCCCCccccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFYGSHFSSL   64 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~-~V~vlE~~~~~GG~~~s~   64 (416)
                      |.++||+|||||++||+||..|++.|+ +|+|+|+++ +||.+..+
T Consensus         2 m~~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg~~~~~   46 (369)
T 3d1c_A            2 MQHHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGHSFKHW   46 (369)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTHHHHTS
T ss_pred             CccCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCCccccC
Confidence            446899999999999999999999999 999999999 99866543

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.43  E-value=1.9e-07  Score=90.82  Aligned_cols=38  Identities=18%  Similarity=0.228  Sum_probs=35.2

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (416)
                      +..+||+|||||++||++|..|+++|++|+|+|+++..
T Consensus         3 ~~~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   40 (397)
T 2vou_A            3 PTTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQP   40 (397)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            44689999999999999999999999999999999874

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.42  E-value=1.3e-07  Score=88.56  Aligned_cols=42  Identities=19%  Similarity=0.294  Sum_probs=38.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEE-EccCCCCCCcccc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLH-LDPNPFYGSHFSS   63 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~v-lE~~~~~GG~~~s   63 (416)
                      .++||+|||||++||+||..|+++|++|+| +|+ +.+||.+..
T Consensus         3 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~-~~~gG~~~~   45 (315)
T 3r9u_A            3 AMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEK-GMPGGQITS   45 (315)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHTCSCEEEECS-SSTTGGGGG
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCCeEEEEeC-CCCCceeee
Confidence            458999999999999999999999999999 999 788998754

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.42  E-value=1e-07  Score=90.16  Aligned_cols=44  Identities=14%  Similarity=0.213  Sum_probs=39.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEcc----CCCCCCcccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDP----NPFYGSHFSS   63 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~----~~~~GG~~~s   63 (416)
                      +..+||+|||||++||+||..|++.|++|+|+|+    ....||.+..
T Consensus         6 ~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~   53 (333)
T 1vdc_A            6 THNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTT   53 (333)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGG
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeee
Confidence            4578999999999999999999999999999999    6778887654

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.42  E-value=7.8e-08  Score=96.07  Aligned_cols=44  Identities=18%  Similarity=0.257  Sum_probs=40.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      +.++||||||||++|++||..|++.|++|+|+|+++.+||.|..
T Consensus         3 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~   46 (478)
T 1v59_A            3 NKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLN   46 (478)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHH
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCccce
Confidence            45699999999999999999999999999999999999997754

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.41  E-value=1.6e-07  Score=94.81  Aligned_cols=44  Identities=30%  Similarity=0.372  Sum_probs=39.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC--------CCCCccccc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP--------FYGSHFSSL   64 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~--------~~GG~~~s~   64 (416)
                      .+|||||||||.+||+||..|++.|++|+|+|+++        .+||.|...
T Consensus        31 ~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~   82 (519)
T 3qfa_A           31 YDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNV   82 (519)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHHHH
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcccccCCc
Confidence            46999999999999999999999999999999965        789987654

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=98.40  E-value=2.2e-07  Score=94.48  Aligned_cols=41  Identities=12%  Similarity=0.112  Sum_probs=37.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (416)
                      .++||+|||||++||++|+.|+++|.+|+|||+++.++...
T Consensus        25 ~~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~~   65 (549)
T 2r0c_A           25 IETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHP   65 (549)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCC
Confidence            46899999999999999999999999999999998876443

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.39  E-value=1.8e-07  Score=94.86  Aligned_cols=47  Identities=21%  Similarity=0.287  Sum_probs=41.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccCh
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSI   66 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~   66 (416)
                      +.++||||||||++||+||..|++.|++|+|+|+++.+||.+....+
T Consensus         7 ~~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~y   53 (545)
T 3uox_A            7 SPALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRY   53 (545)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCC
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCC
Confidence            44689999999999999999999999999999999999998754333

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.39  E-value=1.9e-07  Score=93.60  Aligned_cols=45  Identities=29%  Similarity=0.312  Sum_probs=40.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEcc--------CCCCCCccccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDP--------NPFYGSHFSSL   64 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~--------~~~~GG~~~s~   64 (416)
                      ..+|||||||||.+||+||..|++.|++|+++|+        +..+||.|..+
T Consensus         4 ~~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~   56 (488)
T 3dgz_A            4 QQSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNV   56 (488)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHHHHH
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCeeccc
Confidence            3469999999999999999999999999999998        67899987643

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.39  E-value=1.2e-07  Score=94.81  Aligned_cols=44  Identities=20%  Similarity=0.275  Sum_probs=40.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      +.+|||||||||.+|++||..|++.|++|+|+|+++.+||.|..
T Consensus         4 ~~~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~   47 (482)
T 1ojt_A            4 DAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLN   47 (482)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHH
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCceee
Confidence            34699999999999999999999999999999999999997654

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.39  E-value=1.5e-07  Score=93.72  Aligned_cols=42  Identities=24%  Similarity=0.323  Sum_probs=39.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      +|||||||||.+|++||..|++.|++|+|+|+++.+||.|..
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~   43 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCLN   43 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCcCCC
Confidence            589999999999999999999999999999999999998764

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=98.38  E-value=1.9e-07  Score=94.57  Aligned_cols=41  Identities=17%  Similarity=0.317  Sum_probs=35.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (416)
                      ..++||||||+|++||+||+.|++ |.+|+||||.+..||.+
T Consensus         6 ~~~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~~~g~s   46 (540)
T 1chu_A            6 EHSCDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPVTEGST   46 (540)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCTTC---
T ss_pred             CCCCCEEEECccHHHHHHHHHHhc-CCcEEEEECCCCCCCCh
Confidence            346899999999999999999999 99999999999877654

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.38  E-value=1.9e-07  Score=93.05  Aligned_cols=44  Identities=18%  Similarity=0.229  Sum_probs=40.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      ..++||||||||++|++||..|++.|++|+|+|+++.+||.|..
T Consensus         4 ~~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~   47 (470)
T 1dxl_A            4 SDENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLN   47 (470)
T ss_dssp             CCCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHH
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCccccccC
Confidence            34689999999999999999999999999999999999998764

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.38  E-value=2.6e-07  Score=95.18  Aligned_cols=43  Identities=14%  Similarity=0.235  Sum_probs=39.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      ..|||||||+|++||+||..|+++|++|+|+|+.+..||.+..
T Consensus        45 ~~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~gg~~~~   87 (623)
T 3pl8_A           45 IKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLKIG   87 (623)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSSSSTT
T ss_pred             ccCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCCCcccc
Confidence            4699999999999999999999999999999999999985543

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.38  E-value=1.2e-07  Score=94.06  Aligned_cols=37  Identities=27%  Similarity=0.541  Sum_probs=34.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (416)
                      .++||||||||++||+||..|+++|++|+|+|+++.+
T Consensus         5 ~~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~   41 (453)
T 3atr_A            5 LKYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWN   41 (453)
T ss_dssp             EECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGG
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence            4689999999999999999999999999999998764

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.37  E-value=1.4e-07  Score=94.59  Aligned_cols=41  Identities=24%  Similarity=0.353  Sum_probs=37.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      +|||||||||.+||+||..|++.|++|+|+|++ .+||.|..
T Consensus         8 ~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~-~~GGtc~~   48 (492)
T 3ic9_A            8 NVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGG-AYGTTCAR   48 (492)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTCSCEEEEESS-CSSCHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCC-CCCCcccc
Confidence            599999999999999999999999999999997 59998753

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.37  E-value=1.6e-07  Score=93.71  Aligned_cols=44  Identities=25%  Similarity=0.335  Sum_probs=40.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      +.++||||||||.+|++||..|++.|++|+|+|+++.+||.|..
T Consensus         4 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~   47 (474)
T 1zmd_A            4 PIDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLN   47 (474)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHHHH
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCcccc
Confidence            34689999999999999999999999999999999999998754

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=98.37  E-value=2.1e-07  Score=95.28  Aligned_cols=39  Identities=15%  Similarity=0.283  Sum_probs=37.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhC------CCeEEEEccCCCCCCc
Q 014883           22 AFDLIVIGTGLPESVISAAASAS------GKSVLHLDPNPFYGSH   60 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~------G~~V~vlE~~~~~GG~   60 (416)
                      ++||||||||++||+||+.|++.      |++|+||||++.+|+.
T Consensus        35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~   79 (584)
T 2gmh_A           35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAH   79 (584)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTT
T ss_pred             CCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCc
Confidence            58999999999999999999999      9999999999998875

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=98.37  E-value=1.9e-07  Score=95.64  Aligned_cols=53  Identities=13%  Similarity=0.195  Sum_probs=43.4

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~Ad~VI~  332 (416)
                      ..+.++|.+.+...|++|+++++|++|..+ +++++++|..   .+|+  ++.|+.||+
T Consensus       143 ~~l~~~L~~~~~~~gv~i~~~~~v~~L~~~-~~g~v~Gv~~~~~~~g~~~~i~A~~VVl  200 (588)
T 2wdq_A          143 HALLHTLYQQNLKNHTTIFSEWYALDLVKN-QDGAVVGCTALCIETGEVVYFKARATVL  200 (588)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETEEEEEEEEC-TTSCEEEEEEEETTTCCEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEeCcEEEEEEEC-CCCEEEEEEEEEcCCCeEEEEEcCEEEE
Confidence            578888988888899999999999999985 2577878775   4565  589999994

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=98.36  E-value=2.6e-07  Score=93.08  Aligned_cols=38  Identities=39%  Similarity=0.621  Sum_probs=35.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (416)
                      +.++||||||||++||++|+.|+++|++|+|+|+++..
T Consensus         5 ~~~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~   42 (512)
T 3e1t_A            5 PEVFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFP   42 (512)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSS
T ss_pred             CccCCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCC
Confidence            45699999999999999999999999999999999844

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.36  E-value=2e-07  Score=92.78  Aligned_cols=43  Identities=19%  Similarity=0.261  Sum_probs=39.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      +.++||||||||++|++||..|++.|++|+|+|++ .+||.|..
T Consensus         2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~GG~~~~   44 (467)
T 1zk7_A            2 EPPVQVAVIGSGGAAMAAALKAVEQGAQVTLIERG-TIGGTCVN   44 (467)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-STTHHHHH
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCC-CCCccccC
Confidence            45689999999999999999999999999999998 78998763

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.36  E-value=1.8e-07  Score=87.90  Aligned_cols=42  Identities=12%  Similarity=0.187  Sum_probs=37.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (416)
                      |..+||+|||||++||+||..|++.|++|+|+|+. .+||.+.
T Consensus         3 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~   44 (320)
T 1trb_A            3 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLT   44 (320)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCS-STTGGGG
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEccC-CCCceEe
Confidence            45689999999999999999999999999999964 7888764

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.36  E-value=1.9e-07  Score=92.81  Aligned_cols=42  Identities=31%  Similarity=0.442  Sum_probs=38.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      .+|||||||||.+|++||..|++.|++|+|+|++ .+||.|..
T Consensus         3 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~~   44 (463)
T 2r9z_A            3 QHFDLIAIGGGSGGLAVAEKAAAFGKRVALIESK-ALGGTCVN   44 (463)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHH
T ss_pred             ccCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCC-CCCCcCcC
Confidence            4699999999999999999999999999999998 78998764

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=98.36  E-value=3.3e-07  Score=91.99  Aligned_cols=40  Identities=18%  Similarity=0.227  Sum_probs=36.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      +.++||+|||||++||++|+.|+++|.+|+|||+++.++.
T Consensus         9 ~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~   48 (500)
T 2qa1_A            9 RSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTG   48 (500)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CC
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence            4568999999999999999999999999999999987753

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.36  E-value=1.8e-07  Score=93.13  Aligned_cols=42  Identities=26%  Similarity=0.491  Sum_probs=38.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      +++||||||||++|++||..|++.|++|+|+|++ .+||.+..
T Consensus         2 ~~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~-~~gG~~~~   43 (464)
T 2a8x_A            2 THYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK-YWGGVCLN   43 (464)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-CTTHHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC-CCCCcccc
Confidence            4689999999999999999999999999999998 78987754

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=98.36  E-value=2.4e-07  Score=90.46  Aligned_cols=40  Identities=25%  Similarity=0.391  Sum_probs=35.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCCCCc
Q 014883           21 TAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSH   60 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~GG~   60 (416)
                      .++||||||||++||++|+.|+++  |++|+|||+++..+|.
T Consensus        35 ~~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~~~~~   76 (405)
T 3c4n_A           35 EAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEE   76 (405)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCSSCTT
T ss_pred             CcCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCCCCcc
Confidence            358999999999999999999999  9999999998665554

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=98.36  E-value=2.4e-07  Score=92.91  Aligned_cols=41  Identities=17%  Similarity=0.202  Sum_probs=38.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (416)
                      ...+||+|||||++||++|..|++.|++|+|+|+++.+|+.
T Consensus        90 ~~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~~  130 (497)
T 2bry_A           90 CTNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRH  130 (497)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCCC
T ss_pred             cCCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCCC
Confidence            44689999999999999999999999999999999999865

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.36  E-value=1.9e-07  Score=92.72  Aligned_cols=43  Identities=26%  Similarity=0.339  Sum_probs=39.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccccc
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~   64 (416)
                      +|||||||||.+|++||..|++.|++|+|+|+++.+||.|...
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~   43 (455)
T 2yqu_A            1 MYDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTCLRV   43 (455)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHH
T ss_pred             CCCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCCCCcccee
Confidence            3899999999999999999999999999999999999987643

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.36  E-value=2.7e-07  Score=89.77  Aligned_cols=37  Identities=14%  Similarity=0.297  Sum_probs=34.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (416)
                      .++||||||||++||++|..|+++|++|+|+|+++.+
T Consensus         5 ~~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~   41 (399)
T 2x3n_A            5 NHIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRE   41 (399)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            3589999999999999999999999999999998765

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=98.35  E-value=2.8e-07  Score=90.76  Aligned_cols=34  Identities=9%  Similarity=0.045  Sum_probs=32.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ++||+|||||++||++|+.|+++|++|+|+|+++
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            4799999999999999999999999999999987

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.35  E-value=2e-07  Score=92.36  Aligned_cols=43  Identities=19%  Similarity=0.259  Sum_probs=38.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      +.++||||||||.+|++||..|++.|++|+|+|++ .+||.|..
T Consensus         2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~~   44 (450)
T 1ges_A            2 TKHYDYIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTCVN   44 (450)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHHHH
T ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCC-CCCCcccc
Confidence            34699999999999999999999999999999998 78998764

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.34  E-value=2.1e-07  Score=93.05  Aligned_cols=43  Identities=21%  Similarity=0.346  Sum_probs=38.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      +.++||||||||.+|++||..|++.|++|+|+|++ .+||.|..
T Consensus         9 ~~~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~n   51 (479)
T 2hqm_A            9 TKHYDYLVIGGGSGGVASARRAASYGAKTLLVEAK-ALGGTCVN   51 (479)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTSCCEEEEESS-CTTHHHHH
T ss_pred             cccCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCC-CcCCcCcc
Confidence            34699999999999999999999999999999998 78998764

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=98.34  E-value=4e-07  Score=92.22  Aligned_cols=38  Identities=24%  Similarity=0.367  Sum_probs=35.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (416)
                      .++||||||||++||++|+.|++.|.+|+|||+++.++
T Consensus         4 ~~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~   41 (535)
T 3ihg_A            4 HEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLS   41 (535)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCC
T ss_pred             ccCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence            46899999999999999999999999999999998765

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.34  E-value=3.8e-07  Score=93.03  Aligned_cols=38  Identities=21%  Similarity=0.213  Sum_probs=33.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (416)
                      .++||||||||++||++|+.|+++|++|+|||+++.++
T Consensus        48 ~~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~   85 (570)
T 3fmw_A           48 LTTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPV   85 (570)
T ss_dssp             ---CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCC
Confidence            35899999999999999999999999999999998765

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.34  E-value=3.1e-07  Score=91.83  Aligned_cols=45  Identities=29%  Similarity=0.312  Sum_probs=38.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC---------CCCCccccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP---------FYGSHFSSL   64 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~---------~~GG~~~s~   64 (416)
                      +.+|||||||||.+|++||..|++.|++|+|+|++.         .+||.|...
T Consensus         7 ~~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~~GG~c~~~   60 (483)
T 3dgh_A            7 SYDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNV   60 (483)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTTTCCCCSSCHHHHH
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEeccccccccccCCcCCeeccc
Confidence            456999999999999999999999999999999522         388887643

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.34  E-value=3.7e-07  Score=85.44  Aligned_cols=40  Identities=18%  Similarity=0.306  Sum_probs=36.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEEccCCCCCCcccc
Q 014883           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~-~V~vlE~~~~~GG~~~s   63 (416)
                      |||+|||||++||+||..|++.|+ +|+|+|++ .+||.+..
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~-~~gg~~~~   42 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKG-MPGGQITG   42 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCSSEEEECSS-STTCGGGG
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCcEEEEcCC-CCCccccc
Confidence            799999999999999999999999 99999995 78887654

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=98.34  E-value=2.3e-07  Score=95.92  Aligned_cols=52  Identities=15%  Similarity=0.221  Sum_probs=43.7

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~Ad~VI~  332 (416)
                      ..|.++|.+.+...|++|+.++.|++|..+  +|++++|..   .+|+  .++|+.||+
T Consensus       158 ~~l~~~L~~~a~~~gv~i~~~~~v~~L~~~--~g~v~Gv~~~~~~~G~~~~i~A~~VVl  214 (660)
T 2bs2_A          158 HTMLFAVANECLKLGVSIQDRKEAIALIHQ--DGKCYGAVVRDLVTGDIIAYVAKGTLI  214 (660)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEEE--TTEEEEEEEEETTTCCEEEEECSEEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEECcEEEEEEec--CCEEEEEEEEECCCCcEEEEEcCEEEE
Confidence            378899999888899999999999999987  788888765   4566  489999994

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.33  E-value=2.7e-07  Score=94.28  Aligned_cols=47  Identities=34%  Similarity=0.485  Sum_probs=39.7

Q ss_pred             CCCCCCCC-CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC-CCC
Q 014883           12 VPPYPPIE-PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP-FYG   58 (416)
Q Consensus        12 ~~~~~~~~-~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~-~~G   58 (416)
                      |||...+. ..+|||||||||++|+.||+.|++.|.+|+|+|++. .+|
T Consensus        17 ~~~~~~~~~~~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG   65 (651)
T 3ces_A           17 VPRGSHMFYPDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLG   65 (651)
T ss_dssp             ECCCSCEECSSCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTT
T ss_pred             CCCCCCCCCCCcCCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccc
Confidence            67755543 346999999999999999999999999999999984 455

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=98.32  E-value=3.4e-07  Score=96.18  Aligned_cols=44  Identities=20%  Similarity=0.286  Sum_probs=40.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      ...+||+|||||++||+||..|++.|++|+|+|+++++||.+..
T Consensus       387 ~~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~  430 (729)
T 1o94_A          387 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQ  430 (729)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHH
T ss_pred             cCCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeee
Confidence            34689999999999999999999999999999999999998764

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=98.32  E-value=4.2e-07  Score=92.76  Aligned_cols=60  Identities=18%  Similarity=0.304  Sum_probs=46.1

Q ss_pred             EEeecCCc--chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeC---CCc--EEEcCEEEE
Q 014883          271 LIYPIYGQ--GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SGQ--DILSHKLVL  332 (416)
Q Consensus       271 ~~~p~gG~--~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~---~G~--~i~Ad~VI~  332 (416)
                      +.|+.+..  ..+..++++.++..|++|+.+++|++|..+  ++++++|++.   +|+  +++||.||.
T Consensus       178 ~~~~dg~v~~~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~~--~~~v~gV~~~d~~tg~~~~i~A~~VV~  244 (571)
T 2rgh_A          178 GVYLDFRNNDARLVIDNIKKAAEDGAYLVSKMKAVGFLYE--GDQIVGVKARDLLTDEVIEIKAKLVIN  244 (571)
T ss_dssp             EEECCEECCHHHHHHHHHHHHHHTTCEEESSEEEEEEEEE--TTEEEEEEEEETTTCCEEEEEBSCEEE
T ss_pred             EEecCCeEchHHHHHHHHHHHHHcCCeEEeccEEEEEEEe--CCEEEEEEEEEcCCCCEEEEEcCEEEE
Confidence            44554322  367788888889999999999999999987  6777788753   343  699999994

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=98.31  E-value=5.8e-07  Score=93.00  Aligned_cols=38  Identities=13%  Similarity=0.181  Sum_probs=35.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhh-CCCeEEEEccCCCCC
Q 014883           21 TAFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPFYG   58 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~-~G~~V~vlE~~~~~G   58 (416)
                      .++||+|||||++||++|+.|++ .|.+|+|||+++.++
T Consensus        31 ~~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~   69 (639)
T 2dkh_A           31 SQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPM   69 (639)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCC
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCC
Confidence            46899999999999999999999 999999999998764

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.29  E-value=3.1e-07  Score=91.33  Aligned_cols=43  Identities=30%  Similarity=0.377  Sum_probs=39.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      |+++||||||||.+|++||..|++.|++|+|+|+++ +||.|..
T Consensus         4 m~~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~-~GG~~~~   46 (464)
T 2eq6_A            4 MKTYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE-VGGVCLN   46 (464)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHH
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC-CCCCCCC
Confidence            346999999999999999999999999999999988 8997754

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=98.29  E-value=5.3e-07  Score=93.27  Aligned_cols=52  Identities=13%  Similarity=0.116  Sum_probs=41.0

Q ss_pred             chHHHHHHHHHHhc--CcEEEcCCceeEEEEecCCC---cEEEEEe---CCCc--EEEcCEEEE
Q 014883          279 GELPQAFCRRAAVK--GCLYVLRMPVISLLTDQNSG---SYKGVRL---ASGQ--DILSHKLVL  332 (416)
Q Consensus       279 ~~l~~al~r~~~~~--Gg~i~l~~~V~~I~~~~~~g---~~~gV~l---~~G~--~i~Ad~VI~  332 (416)
                      ..+.++|.+.++..  |.+|+.++.|.+|.++  ++   +++||..   .+|+  .|+|+.||+
T Consensus       166 ~~i~~~L~~~a~~~~~gV~i~~~~~v~dLi~~--~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVL  227 (662)
T 3gyx_A          166 ESYKVIVAEAAKNALGQDRIIERIFIVKLLLD--KNTPNRIAGAVGFNLRANEVHIFKANAMVV  227 (662)
T ss_dssp             TSHHHHHHHHHHHHHCTTTEECSEEECCCEEC--SSSTTBEEEEEEEESSSSCEEEEECSEEEE
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEceEEEEEEEe--CCccceEEEEEEEEcCCCcEEEEEeCEEEE
Confidence            46777888877777  9999999999999987  44   8888864   3454  589999994

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=98.29  E-value=5.5e-07  Score=90.41  Aligned_cols=39  Identities=21%  Similarity=0.343  Sum_probs=36.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      .++||+|||||++||++|+.|+++|.+|+|||+++.++.
T Consensus        11 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~   49 (499)
T 2qa2_A           11 SDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTG   49 (499)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Confidence            468999999999999999999999999999999987753

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.29  E-value=3.5e-07  Score=91.68  Aligned_cols=53  Identities=13%  Similarity=0.139  Sum_probs=43.4

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (416)
                      .++.+.+.+.+++.|.+|++++.|++|..+  ++..+.|++.+|+++.||.||+.
T Consensus       231 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~--~~~~~~v~~~~G~~i~~D~vv~a  283 (490)
T 1fec_A          231 SELRKQLTEQLRANGINVRTHENPAKVTKN--ADGTRHVVFESGAEADYDVVMLA  283 (490)
T ss_dssp             HHHHHHHHHHHHHTTEEEEETCCEEEEEEC--TTSCEEEEETTSCEEEESEEEEC
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEc--CCCEEEEEECCCcEEEcCEEEEc
Confidence            367788888888999999999999999875  33235788889989999999944

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=98.29  E-value=2.9e-07  Score=87.94  Aligned_cols=37  Identities=11%  Similarity=0.020  Sum_probs=33.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCC------CeEEEEccCCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASG------KSVLHLDPNPFYGS   59 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G------~~V~vlE~~~~~GG   59 (416)
                      +||||||||++||++|+.|+++|      ++|+|||++...+|
T Consensus         1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~~~~   43 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLT   43 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCGGGS
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCCCCC
Confidence            39999999999999999999998      99999999875444

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=98.29  E-value=3.8e-07  Score=93.69  Aligned_cols=52  Identities=19%  Similarity=0.320  Sum_probs=43.2

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~Ad~VI~  332 (416)
                      ..|.++|.+.+...|++|+.++.|++|..+  +|++++|..   .+|+  .++|+.||+
T Consensus       155 ~~l~~~L~~~~~~~gv~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~G~~~~i~A~~VVl  211 (621)
T 2h88_A          155 HSLLHTLYGRSLRYDTSYFVEYFALDLLME--NGECRGVIALCIEDGTIHRFRAKNTVI  211 (621)
T ss_dssp             HHHHHHHHHHHTTSCCEEEETEEEEEEEEE--TTEEEEEEEEETTTCCEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEEceEEEEEEEE--CCEEEEEEEEEcCCCcEEEEEcCeEEE
Confidence            478888988888899999999999999987  788888775   3565  689999984

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.29  E-value=2.8e-07  Score=92.41  Aligned_cols=53  Identities=9%  Similarity=0.156  Sum_probs=43.4

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (416)
                      .++.+.+.+.+++.|.+|++++.|++|..+  ++..+.|++.+|+++.||.||+.
T Consensus       235 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~--~~~~~~v~~~~G~~i~~D~vv~a  287 (495)
T 2wpf_A          235 ETIREEVTKQLTANGIEIMTNENPAKVSLN--TDGSKHVTFESGKTLDVDVVMMA  287 (495)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEEC--TTSCEEEEETTSCEEEESEEEEC
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEc--CCceEEEEECCCcEEEcCEEEEC
Confidence            367788888888999999999999999875  33235788889999999999954

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=98.28  E-value=5.4e-07  Score=87.53  Aligned_cols=35  Identities=17%  Similarity=0.284  Sum_probs=32.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (416)
                      .+|+|||||++||++|..|+++|++|+||||++.+
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~   36 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAA   36 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            48999999999999999999999999999997654

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.27  E-value=4.2e-07  Score=88.16  Aligned_cols=35  Identities=14%  Similarity=0.226  Sum_probs=33.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      ++||+|||||++||++|+.|+++|++|+|+|+++.
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   36 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            47999999999999999999999999999999875

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.26  E-value=5.6e-07  Score=83.38  Aligned_cols=58  Identities=19%  Similarity=0.138  Sum_probs=43.1

Q ss_pred             EEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCC
Q 014883          271 LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS  335 (416)
Q Consensus       271 ~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~  335 (416)
                      ...+..+...+.+.+.+.++..|.+++. +.|++|..   ++   .|++.+|+++.+|.||+..-
T Consensus       166 v~~v~~~~~~~~~~~~~~l~~~gv~i~~-~~v~~i~~---~~---~v~~~~g~~~~~D~vi~a~G  223 (297)
T 3fbs_A          166 TTFFTNGIVEPDADQHALLAARGVRVET-TRIREIAG---HA---DVVLADGRSIALAGLFTQPK  223 (297)
T ss_dssp             EEEECTTTCCCCHHHHHHHHHTTCEEEC-SCEEEEET---TE---EEEETTSCEEEESEEEECCE
T ss_pred             EEEEECCCCCCCHHHHHHHHHCCcEEEc-ceeeeeec---CC---eEEeCCCCEEEEEEEEEccC
Confidence            3344444446677777888899999995 99999863   22   67788999999999996543

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.26  E-value=6.2e-07  Score=91.26  Aligned_cols=39  Identities=28%  Similarity=0.357  Sum_probs=35.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC-CCCC
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP-FYGS   59 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~-~~GG   59 (416)
                      .+|||||||||++|+.||..|++.|.+|+|+|++. .+|+
T Consensus        26 ~~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~   65 (637)
T 2zxi_A           26 DEFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQ   65 (637)
T ss_dssp             GCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCC
Confidence            46999999999999999999999999999999984 5553

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.25  E-value=3.8e-07  Score=90.53  Aligned_cols=42  Identities=19%  Similarity=0.233  Sum_probs=39.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      .+|||||||||.+|++||..|++.|++|+|+|+ +.+||.|..
T Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~-~~~GG~~~~   45 (458)
T 1lvl_A            4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG-QALGGTCLN   45 (458)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTCCEEEECS-SCTTHHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEcc-CCCCCcCCC
Confidence            468999999999999999999999999999999 789998864

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.24  E-value=7e-07  Score=88.78  Aligned_cols=42  Identities=12%  Similarity=0.279  Sum_probs=39.5

Q ss_pred             ccEEEECCChhHHHHHHHHhh---CCCe---EEEEccCCCCCCccccc
Q 014883           23 FDLIVIGTGLPESVISAAASA---SGKS---VLHLDPNPFYGSHFSSL   64 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~---~G~~---V~vlE~~~~~GG~~~s~   64 (416)
                      +||+|||||++||+||..|++   .|++   |+|+|+++.+||.+...
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~   50 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYT   50 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCC
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecC
Confidence            699999999999999999999   9999   99999999999987654

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.24  E-value=4.8e-07  Score=89.75  Aligned_cols=41  Identities=20%  Similarity=0.258  Sum_probs=38.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      +|||||||||.+|++||..|++.|++|+|+|++ .+||.|..
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~gG~~~~   43 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVCLN   43 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCCCcCcC
Confidence            589999999999999999999999999999998 89998754

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.24  E-value=5.7e-07  Score=89.27  Aligned_cols=41  Identities=29%  Similarity=0.310  Sum_probs=37.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCC-----CeEEEEccCCCCCCcc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASG-----KSVLHLDPNPFYGSHF   61 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G-----~~V~vlE~~~~~GG~~   61 (416)
                      ..+||||||||++||+||..|++.|     .+|+|||+++.+|...
T Consensus        29 ~~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~   74 (463)
T 3s5w_A           29 VVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHG   74 (463)
T ss_dssp             CEESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSG
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcC
Confidence            4689999999999999999999999     9999999999998444

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.23  E-value=6.6e-07  Score=91.32  Aligned_cols=46  Identities=20%  Similarity=0.301  Sum_probs=36.4

Q ss_pred             CCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC-CCCCc
Q 014883           15 YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP-FYGSH   60 (416)
Q Consensus        15 ~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~-~~GG~   60 (416)
                      ..+....+|||||||||++||.||..|++.|.+|+|+|++. .+|+.
T Consensus        14 ~~~~~~~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~   60 (641)
T 3cp8_A           14 LVPRGSHMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARM   60 (641)
T ss_dssp             ------CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCC
T ss_pred             ccccccCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCC
Confidence            33444557999999999999999999999999999999985 56653

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=98.22  E-value=1.1e-06  Score=83.88  Aligned_cols=39  Identities=21%  Similarity=0.126  Sum_probs=35.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (416)
                      +||||||||++|+.||..|+++|++|+++|++...+.-.
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~~~tp~   40 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPKRMTPA   40 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTTSCCSS
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccCCcCCcc
Confidence            699999999999999999999999999999987555443

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=98.22  E-value=7.6e-07  Score=86.10  Aligned_cols=35  Identities=17%  Similarity=0.209  Sum_probs=33.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFY   57 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~   57 (416)
                      .||||||||++||++|..|+++  |++|+|+|+++.+
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~   37 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ   37 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence            3899999999999999999999  9999999999887

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.22  E-value=3.9e-07  Score=91.49  Aligned_cols=50  Identities=10%  Similarity=0.123  Sum_probs=42.1

Q ss_pred             hHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 014883          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (416)
Q Consensus       280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~  332 (416)
                      ++.+.+.+.+++.|.+|+++++|++|..+  ++. +.|++.+|+++.||.||+
T Consensus       224 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~~--~~~-v~v~~~~g~~i~aD~Vv~  273 (499)
T 1xdi_A          224 DAALVLEESFAERGVRLFKNARAASVTRT--GAG-VLVTMTDGRTVEGSHALM  273 (499)
T ss_dssp             HHHHHHHHHHHHTTCEEETTCCEEEEEEC--SSS-EEEEETTSCEEEESEEEE
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEe--CCE-EEEEECCCcEEEcCEEEE
Confidence            67788888888999999999999999875  444 467778888999999994

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=98.21  E-value=9.8e-07  Score=89.68  Aligned_cols=51  Identities=25%  Similarity=0.234  Sum_probs=43.9

Q ss_pred             chHHHHHHHHHHhc-CcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE
Q 014883          279 GELPQAFCRRAAVK-GCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV  331 (416)
Q Consensus       279 ~~l~~al~r~~~~~-Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI  331 (416)
                      ..+.+.|.+.+++. |++++++ .|++|..+ +++.+++|++.+|++++||.||
T Consensus       194 ~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~-~~g~~~~v~~~~G~~i~ad~vI  245 (550)
T 2e4g_A          194 HLVADFLRRFATEKLGVRHVED-RVEHVQRD-ANGNIESVRTATGRVFDADLFV  245 (550)
T ss_dssp             HHHHHHHHHHHHHHSCCEEEEC-CEEEEEEC-TTSCEEEEEETTSCEEECSEEE
T ss_pred             HHHHHHHHHHHHhcCCcEEEEC-eEeEEEEc-CCCCEEEEEECCCCEEECCEEE
Confidence            46888888888888 9999999 99999875 3566778988889899999999

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.21  E-value=9e-07  Score=82.74  Aligned_cols=39  Identities=15%  Similarity=0.382  Sum_probs=35.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (416)
                      +|||+|||||++||+||..|++.|++|+|+|+  ++||.+.
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~--~~gG~~~   39 (310)
T 1fl2_A            1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGE--RFGGQIL   39 (310)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECS--STTGGGG
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeC--CCCceec
Confidence            48999999999999999999999999999986  5788765

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=98.21  E-value=1.1e-06  Score=89.03  Aligned_cols=51  Identities=16%  Similarity=0.228  Sum_probs=43.3

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV  331 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI  331 (416)
                      ..+.+.|.+.++..|++++.+ .|++|..+ +++.+++|++.+|++++||.||
T Consensus       165 ~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~-~~g~~~~v~~~~g~~i~ad~vV  215 (538)
T 2aqj_A          165 HLVADFLKRWAVERGVNRVVD-EVVDVRLN-NRGYISNLLTKEGRTLEADLFI  215 (538)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEC-CEEEEEEC-TTSCEEEEEETTSCEECCSEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEEe-eEeEEEEc-CCCcEEEEEECCCcEEEeCEEE
Confidence            577788888888899999999 89999875 2566678888888899999999

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.20  E-value=6.9e-07  Score=89.70  Aligned_cols=53  Identities=8%  Similarity=0.014  Sum_probs=43.0

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcE-EEcCEEEEC
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQD-ILSHKLVLD  333 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~-i~Ad~VI~~  333 (416)
                      .++.+.+.+.+++.|.++++++.|++|..+. ++. +.|++.+|++ +.||.||+.
T Consensus       217 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~-~~~-~~v~~~~g~~~~~~D~vi~a  270 (500)
T 1onf_A          217 ESVINVLENDMKKNNINIVTFADVVEIKKVS-DKN-LSIHLSDGRIYEHFDHVIYC  270 (500)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEESS-TTC-EEEEETTSCEEEEESEEEEC
T ss_pred             hhhHHHHHHHHHhCCCEEEECCEEEEEEEcC-Cce-EEEEECCCcEEEECCEEEEC
Confidence            4677888888889999999999999998641 333 4677889988 999999954

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=98.20  E-value=1.4e-06  Score=90.77  Aligned_cols=42  Identities=26%  Similarity=0.411  Sum_probs=39.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (416)
                      ..+||||||||.+||.||..|++.|++|+|+|+++++||.+.
T Consensus       372 ~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~  413 (671)
T 1ps9_A          372 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFN  413 (671)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeee
Confidence            458999999999999999999999999999999999999864

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.19  E-value=5.9e-07  Score=90.06  Aligned_cols=43  Identities=14%  Similarity=0.179  Sum_probs=39.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      ..++||||||||++||+||..|++. ++|+|+|+++++||.+..
T Consensus       106 ~~~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~  148 (493)
T 1y56_A          106 RVVVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWL  148 (493)
T ss_dssp             EEEESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGG
T ss_pred             cccCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeec
Confidence            3468999999999999999999999 999999999999998764

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.19  E-value=7.9e-07  Score=89.85  Aligned_cols=53  Identities=8%  Similarity=0.002  Sum_probs=44.6

Q ss_pred             cchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (416)
Q Consensus       278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (416)
                      -.++++.+.+..+..|.++++++.|+++..+  ++. +.|++.+++++.+|.|++.
T Consensus       262 D~ei~~~l~~~l~~~gi~~~~~~~v~~~~~~--~~~-~~v~~~~~~~~~~D~vLvA  314 (542)
T 4b1b_A          262 DQQCAVKVKLYMEEQGVMFKNGILPKKLTKM--DDK-ILVEFSDKTSELYDTVLYA  314 (542)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEETCCEEEEEEE--TTE-EEEEETTSCEEEESEEEEC
T ss_pred             chhHHHHHHHHHHhhcceeecceEEEEEEec--CCe-EEEEEcCCCeEEEEEEEEc
Confidence            3578888888889999999999999999886  454 5677889999999999953

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=98.17  E-value=6.8e-07  Score=91.69  Aligned_cols=40  Identities=20%  Similarity=0.179  Sum_probs=36.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCC--CeEEEEccCCCCCCc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSH   60 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G--~~V~vlE~~~~~GG~   60 (416)
                      .++||||||||++||+||+.|+++|  .+|+||||....+|.
T Consensus         4 ~~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~~~   45 (602)
T 1kf6_A            4 FQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSH   45 (602)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSG
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCCCCh
Confidence            3689999999999999999999999  999999999876654

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=98.16  E-value=1.5e-06  Score=86.59  Aligned_cols=36  Identities=22%  Similarity=0.366  Sum_probs=33.5

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (416)
                      ||||||+|++||+||..|+++|++|+|+||. ..||.
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~-~~~g~   36 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKR-IDGGS   36 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSS-TTCSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC-CCCch
Confidence            8999999999999999999999999999999 56664

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=98.15  E-value=1.5e-06  Score=74.47  Aligned_cols=33  Identities=30%  Similarity=0.412  Sum_probs=32.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      |||+|||||++|+.+|..|++.|.+|+++|+++
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~   34 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGR   34 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            799999999999999999999999999999987

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=98.15  E-value=2.2e-06  Score=88.65  Aligned_cols=52  Identities=15%  Similarity=0.161  Sum_probs=40.8

Q ss_pred             chHHHHHHHHHHhc-Cc-EEEcCCceeEEEEecCCC---cEEEEEe---CCCc--EEEcCEEEE
Q 014883          279 GELPQAFCRRAAVK-GC-LYVLRMPVISLLTDQNSG---SYKGVRL---ASGQ--DILSHKLVL  332 (416)
Q Consensus       279 ~~l~~al~r~~~~~-Gg-~i~l~~~V~~I~~~~~~g---~~~gV~l---~~G~--~i~Ad~VI~  332 (416)
                      ..+...|.+.++.. |. +|+.++.|++|..+  ++   +++||..   .+|+  ++.|+.||+
T Consensus       151 ~~~~~~l~~~~~~~~gv~~i~~~~~v~~L~~~--~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVl  212 (643)
T 1jnr_A          151 ESYKPIIAEAAKMAVGEENIYERVFIFELLKD--NNDPNAVAGAVGFSVREPKFYVFKAKAVIL  212 (643)
T ss_dssp             TTHHHHHHHHHHHHHCGGGEECSEEEEEEEEC--TTCTTBEEEEEEEESSSSCEEEEECSEEEE
T ss_pred             HHHHHHHHHHHHhcCCCcEEEecCEEEEEEEc--CCccceeEEEEEEEecCCcEEEEEcCEEEE
Confidence            35677777777777 99 99999999999986  55   8888764   4665  589999994

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=98.14  E-value=1.3e-06  Score=94.52  Aligned_cols=42  Identities=29%  Similarity=0.377  Sum_probs=40.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (416)
                      ..+||||||+|++||+||..|++.|++|+|+|+++++||.+.
T Consensus       127 ~~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~  168 (965)
T 2gag_A          127 VHTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLL  168 (965)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGG
T ss_pred             cCCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceec
Confidence            468999999999999999999999999999999999999988

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=98.13  E-value=1.4e-06  Score=88.06  Aligned_cols=36  Identities=22%  Similarity=0.406  Sum_probs=32.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhh-CCCeEEEEccCCC
Q 014883           21 TAFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPF   56 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~-~G~~V~vlE~~~~   56 (416)
                      .+||+||||+|.+|+++|.+|++ .|++|+|||+..+
T Consensus        16 ~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~   52 (526)
T 3t37_A           16 PNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEE   52 (526)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBC
T ss_pred             CCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCC
Confidence            37999999999999999999998 7899999999654

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=98.12  E-value=1.7e-06  Score=87.77  Aligned_cols=37  Identities=30%  Similarity=0.442  Sum_probs=34.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (416)
                      .+||+||||+|.+|+++|.+|+++|++|+|||+....
T Consensus         6 ~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~~   42 (546)
T 1kdg_A            6 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPS   42 (546)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC
T ss_pred             CceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            4699999999999999999999999999999998754

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=98.11  E-value=1.9e-06  Score=87.75  Aligned_cols=37  Identities=16%  Similarity=0.353  Sum_probs=34.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCC-CeEEEEccCCC
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPF   56 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G-~~V~vlE~~~~   56 (416)
                      ..+||+||||||.+||++|.+|++.| .+|+||||...
T Consensus         4 ~~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~   41 (577)
T 3q9t_A            4 GSHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG   41 (577)
T ss_dssp             TCEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred             CCcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            35699999999999999999999998 79999999765

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=98.11  E-value=1.6e-06  Score=90.07  Aligned_cols=45  Identities=16%  Similarity=0.231  Sum_probs=38.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhh-----CCCeEEEEccCCCC--CCcccccC
Q 014883           21 TAFDLIVIGTGLPESVISAAASA-----SGKSVLHLDPNPFY--GSHFSSLS   65 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~-----~G~~V~vlE~~~~~--GG~~~s~~   65 (416)
                      .++||+|||||++||++|+.|++     .|.+|+|+|+++..  .|++..+.
T Consensus         7 ~~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~~~~gra~~l~   58 (665)
T 1pn0_A            7 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQ   58 (665)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEEC
T ss_pred             CCCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCCCCCCceeEEC
Confidence            46899999999999999999999     99999999998764  45554444

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.09  E-value=1.9e-06  Score=85.98  Aligned_cols=51  Identities=8%  Similarity=0.090  Sum_probs=40.5

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (416)
                      .++.+.+.+.++..|.+|++++.|++|..   ++++..|.+ +++++.||.||+.
T Consensus       227 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~---~~~v~~v~~-~~~~i~~D~vi~a  277 (480)
T 3cgb_A          227 GDMAEYIYKEADKHHIEILTNENVKAFKG---NERVEAVET-DKGTYKADLVLVS  277 (480)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEE---SSBEEEEEE-TTEEEECSEEEEC
T ss_pred             HHHHHHHHHHHHHcCcEEEcCCEEEEEEc---CCcEEEEEE-CCCEEEcCEEEEC
Confidence            46778888888899999999999999975   345556765 4568999999943

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.08  E-value=2.6e-06  Score=85.99  Aligned_cols=41  Identities=15%  Similarity=0.356  Sum_probs=37.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (416)
                      +..+||+|||||++||+||..|++.|++|+|+|+  ++||.+.
T Consensus       210 ~~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~--~~GG~~~  250 (521)
T 1hyu_A          210 RDAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGE--RFGGQVL  250 (521)
T ss_dssp             SCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECS--STTGGGT
T ss_pred             cCcccEEEECCcHHHHHHHHHHHhCCCeEEEEEC--CCCCccc
Confidence            3468999999999999999999999999999996  5888775

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=98.06  E-value=2e-06  Score=86.83  Aligned_cols=51  Identities=10%  Similarity=0.210  Sum_probs=42.4

Q ss_pred             chHHHHHHHHHHh-cCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE
Q 014883          279 GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV  331 (416)
Q Consensus       279 ~~l~~al~r~~~~-~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI  331 (416)
                      ..+.+.|.+.++. .|++++.+ .|++|..+ +++.+++|++.+|++++||.||
T Consensus       175 ~~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~-~~g~~~~v~~~~g~~i~ad~vV  226 (526)
T 2pyx_A          175 AKFSQLLTEHCTQKLGVTHIRD-HVSQIINN-QHGDIEKLITKQNGEISGQLFI  226 (526)
T ss_dssp             HHHHHHHHHHHHHTSCCEEEEC-CEEEEEEC-TTSCEEEEEESSSCEEECSEEE
T ss_pred             HHHHHHHHHHHHhcCCCEEEEe-EEEEEEec-CCCcEEEEEECCCCEEEcCEEE
Confidence            4677888888888 89999999 59999876 2566678888888889999999

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=98.06  E-value=1.8e-06  Score=85.55  Aligned_cols=42  Identities=14%  Similarity=0.143  Sum_probs=38.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhh-C------CCeEEEEccCCCCCCccc
Q 014883           21 TAFDLIVIGTGLPESVISAAASA-S------GKSVLHLDPNPFYGSHFS   62 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~-~------G~~V~vlE~~~~~GG~~~   62 (416)
                      ..+||+|||||++|+.||..|++ .      |++|+|+|+++.+||.++
T Consensus         2 ~~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~   50 (456)
T 1lqt_A            2 RPYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVR   50 (456)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccc
Confidence            45899999999999999999999 7      999999999999998764

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.04  E-value=2.7e-06  Score=87.14  Aligned_cols=50  Identities=24%  Similarity=0.195  Sum_probs=41.6

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (416)
                      .++.+.+.+.+++.|.++++++.|++|..+  ++   +|++.+|+++.||.||+.
T Consensus       228 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~--~~---~v~~~~g~~i~~D~Vi~a  277 (588)
T 3ics_A          228 YEMAAYVHEHMKNHDVELVFEDGVDALEEN--GA---VVRLKSGSVIQTDMLILA  277 (588)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEGG--GT---EEEETTSCEEECSEEEEC
T ss_pred             HHHHHHHHHHHHHcCCEEEECCeEEEEecC--CC---EEEECCCCEEEcCEEEEc
Confidence            467788888889999999999999999754  33   467789999999999954

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.04  E-value=2.8e-06  Score=83.99  Aligned_cols=41  Identities=10%  Similarity=0.119  Sum_probs=35.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCCCCcc
Q 014883           21 TAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHF   61 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~GG~~   61 (416)
                      +++||||||||++||+||..|++.  |++|+|+|+++++++..
T Consensus         2 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~   44 (449)
T 3kd9_A            2 SLKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAP   44 (449)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC---
T ss_pred             CcCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCC
Confidence            457999999999999999999998  89999999999887544

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=98.03  E-value=2.1e-06  Score=86.95  Aligned_cols=38  Identities=21%  Similarity=0.383  Sum_probs=34.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      .+||+||||+|.+|+++|.+|++ |++|+|||+....++
T Consensus        25 ~~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~~~~   62 (536)
T 1ju2_A           25 GSYDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSLPTA   62 (536)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBCGGG
T ss_pred             CcccEEEECccHHHHHHHHHHhc-CCcEEEEecCCCcCC
Confidence            46999999999999999999999 999999999877644

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.03  E-value=2.3e-06  Score=85.18  Aligned_cols=53  Identities=11%  Similarity=0.133  Sum_probs=44.4

Q ss_pred             cchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (416)
Q Consensus       278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (416)
                      ..++.+.+.+.+++.|.+++++++|++|..+  ++++ .|++.+|+++.||.||+.
T Consensus       201 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~--~~~v-~v~~~~g~~i~aD~Vv~a  253 (472)
T 3iwa_A          201 SKSLSQMLRHDLEKNDVVVHTGEKVVRLEGE--NGKV-ARVITDKRTLDADLVILA  253 (472)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSCCEEEEEES--SSBE-EEEEESSCEEECSEEEEC
T ss_pred             CHHHHHHHHHHHHhcCCEEEeCCEEEEEEcc--CCeE-EEEEeCCCEEEcCEEEEC
Confidence            4578888888889999999999999999874  5554 477789999999999954

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=98.03  E-value=2.7e-06  Score=87.39  Aligned_cols=43  Identities=30%  Similarity=0.329  Sum_probs=36.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccC-C-------CCCCccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN-P-------FYGSHFS   62 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~-~-------~~GG~~~   62 (416)
                      ...|||+|||||.+||+||..|++.|++|+|+|+. +       ++||.|.
T Consensus       105 ~~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~~~~~~g~~~~~GG~~~  155 (598)
T 2x8g_A          105 KYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCV  155 (598)
T ss_dssp             SSSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTHHHH
T ss_pred             cccccEEEECCCccHHHHHHHHHhCCCeEEEEeccCCcccccccccCceEe
Confidence            34699999999999999999999999999999983 3       4677543

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=98.02  E-value=3.4e-06  Score=91.82  Aligned_cols=41  Identities=10%  Similarity=0.200  Sum_probs=38.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC-eEEEEccCCCCCCcc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFYGSHF   61 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~-~V~vlE~~~~~GG~~   61 (416)
                      ..+||+|||||.+||+||..|++.|+ +|+|+|+++++||..
T Consensus       186 ~~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~  227 (1025)
T 1gte_A          186 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLS  227 (1025)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHH
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCccc
Confidence            46899999999999999999999999 799999999999975

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=98.01  E-value=2.2e-06  Score=86.27  Aligned_cols=51  Identities=22%  Similarity=0.255  Sum_probs=43.7

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV  331 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI  331 (416)
                      ..+.+.|.+.++..|++++.+ .|++|..+ +++.+++|++.+|++++||.||
T Consensus       173 ~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~-~~~~~~~v~~~~g~~~~ad~vV  223 (511)
T 2weu_A          173 DEVARYLSEYAIARGVRHVVD-DVQHVGQD-ERGWISGVHTKQHGEISGDLFV  223 (511)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEC-CEEEEEEC-TTSCEEEEEESSSCEEECSEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEEC-eEeEEEEc-CCCCEEEEEECCCCEEEcCEEE
Confidence            467788888888899999999 99999885 2666778988888899999999

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=97.97  E-value=5.6e-06  Score=80.97  Aligned_cols=54  Identities=15%  Similarity=0.195  Sum_probs=47.5

Q ss_pred             cchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (416)
Q Consensus       278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (416)
                      ...+.+.+.+.+++.|.+|++++.|++|..+  ++++.+|++.+|+++.||.||+.
T Consensus       193 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~--~~~v~~v~l~dG~~i~aD~Vv~a  246 (415)
T 3lxd_A          193 GEALSEFYQAEHRAHGVDLRTGAAMDCIEGD--GTKVTGVRMQDGSVIPADIVIVG  246 (415)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEETCCEEEEEES--SSBEEEEEESSSCEEECSEEEEC
T ss_pred             CHHHHHHHHHHHHhCCCEEEECCEEEEEEec--CCcEEEEEeCCCCEEEcCEEEEC
Confidence            4577888888889999999999999999875  67777899999999999999964

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.97  E-value=3.7e-06  Score=83.39  Aligned_cols=42  Identities=10%  Similarity=-0.034  Sum_probs=38.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCC--CeEEEEccCCCCCCccc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSHFS   62 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G--~~V~vlE~~~~~GG~~~   62 (416)
                      ..+||+|||+|++|+.||..|++.|  ++|+|+|+++++||+++
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~   48 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVR   48 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHH
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceee
Confidence            3579999999999999999999999  99999999999998763

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=97.97  E-value=4.8e-06  Score=84.74  Aligned_cols=38  Identities=24%  Similarity=0.375  Sum_probs=34.2

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhC-CCeEEEEccCC
Q 014883           18 IEPTAFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNP   55 (416)
Q Consensus        18 ~~~~~~DViIIGaGl~GL~aA~~La~~-G~~V~vlE~~~   55 (416)
                      +...+||+||||||.+||++|.+|++. |++|+||||..
T Consensus        15 ~~~~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~   53 (583)
T 3qvp_A           15 VSGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   53 (583)
T ss_dssp             TTTCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred             cCCCCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            445679999999999999999999975 89999999986

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=97.92  E-value=5.8e-06  Score=81.82  Aligned_cols=52  Identities=6%  Similarity=0.137  Sum_probs=42.6

Q ss_pred             cchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (416)
Q Consensus       278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (416)
                      -..+++.+.+.+++.|.+|+++++|++|..+  ++++ .|++.+| ++.||.||+.
T Consensus       188 d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~--~~~v-~v~~~~g-~i~aD~Vv~A  239 (452)
T 3oc4_A          188 DKEMVAEVQKSLEKQAVIFHFEETVLGIEET--ANGI-VLETSEQ-EISCDSGIFA  239 (452)
T ss_dssp             CHHHHHHHHHHHHTTTEEEEETCCEEEEEEC--SSCE-EEEESSC-EEEESEEEEC
T ss_pred             CHHHHHHHHHHHHHcCCEEEeCCEEEEEEcc--CCeE-EEEECCC-EEEeCEEEEC
Confidence            3567788888889999999999999999865  5554 7877666 8999999943

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=97.92  E-value=7.2e-06  Score=82.33  Aligned_cols=39  Identities=23%  Similarity=0.335  Sum_probs=35.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (416)
                      +.+||+||||+|.+|+++|.+|++.|++|+|+|+..+.+
T Consensus         3 ~~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~~   41 (504)
T 1n4w_A            3 GGYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWN   41 (504)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence            457999999999999999999999999999999998766

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=97.91  E-value=8.9e-06  Score=79.97  Aligned_cols=53  Identities=9%  Similarity=0.041  Sum_probs=44.9

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEE--ecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLT--DQNSGSYKGVRLASGQDILSHKLVLD  333 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~--~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (416)
                      .++.+.+.+.+++.|.++++++.|++|..  +  ++++.+|++.+|+++.||.||+.
T Consensus       191 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~--~~~v~~v~~~~G~~i~~D~Vv~a  245 (431)
T 1q1r_A          191 PPVSAFYEHLHREAGVDIRTGTQVCGFEMSTD--QQKVTAVLCEDGTRLPADLVIAG  245 (431)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEEECTT--TCCEEEEEETTSCEEECSEEEEC
T ss_pred             HHHHHHHHHHHHhCCeEEEeCCEEEEEEeccC--CCcEEEEEeCCCCEEEcCEEEEC
Confidence            46777888888899999999999999986  3  56666888889999999999954

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.89  E-value=7.9e-06  Score=81.79  Aligned_cols=51  Identities=18%  Similarity=0.180  Sum_probs=43.0

Q ss_pred             hHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (416)
Q Consensus       280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (416)
                      .+.+.+.+.+++.|.++++++.|++|..+  +++ +.|++.+|+++.||.||+.
T Consensus       227 ~~~~~~~~~l~~~GV~v~~~~~V~~i~~~--~~~-~~v~l~dG~~i~aD~Vv~a  277 (493)
T 1m6i_A          227 YLSNWTMEKVRREGVKVMPNAIVQSVGVS--SGK-LLIKLKDGRKVETDHIVAA  277 (493)
T ss_dssp             HHHHHHHHHHHTTTCEEECSCCEEEEEEE--TTE-EEEEETTSCEEEESEEEEC
T ss_pred             HHHHHHHHHHHhcCCEEEeCCEEEEEEec--CCe-EEEEECCCCEEECCEEEEC
Confidence            57777888888999999999999999865  454 4788889999999999954

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.88  E-value=8e-06  Score=80.81  Aligned_cols=53  Identities=19%  Similarity=0.205  Sum_probs=43.6

Q ss_pred             cchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (416)
Q Consensus       278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (416)
                      ..++.+.+.+.+++.|.+++++++|++|..+  ++++..|++ +|+++.||.||+.
T Consensus       190 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~--~~~v~~v~~-~g~~i~~D~vv~a  242 (452)
T 2cdu_A          190 DKEFTDILAKDYEAHGVNLVLGSKVAAFEEV--DDEIITKTL-DGKEIKSDIAILC  242 (452)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEESSCEEEEEEE--TTEEEEEET-TSCEEEESEEEEC
T ss_pred             hhhHHHHHHHHHHHCCCEEEcCCeeEEEEcC--CCeEEEEEe-CCCEEECCEEEEC
Confidence            3567888888889999999999999999865  566656764 8889999999943

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=97.87  E-value=1.3e-05  Score=80.62  Aligned_cols=38  Identities=16%  Similarity=0.236  Sum_probs=35.2

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (416)
                      +.+||+||||+|.+|+++|.+|++.|++|+|||+....
T Consensus         9 ~~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~   46 (507)
T 1coy_A            9 GDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSW   46 (507)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence            45799999999999999999999999999999998754

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=97.87  E-value=9e-06  Score=78.59  Aligned_cols=52  Identities=17%  Similarity=0.091  Sum_probs=43.4

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (416)
                      ..+.+.+.+.++..|.++++++.|++|..+  ++. +.|++.+|+++.||.||+.
T Consensus       187 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~--~~~-~~v~~~~g~~i~~d~vv~a  238 (384)
T 2v3a_A          187 PAAAKAVQAGLEGLGVRFHLGPVLASLKKA--GEG-LEAHLSDGEVIPCDLVVSA  238 (384)
T ss_dssp             HHHHHHHHHHHHTTTCEEEESCCEEEEEEE--TTE-EEEEETTSCEEEESEEEEC
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEec--CCE-EEEEECCCCEEECCEEEEC
Confidence            457788888888999999999999999875  443 5788889999999999954

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=97.85  E-value=5.9e-06  Score=80.55  Aligned_cols=49  Identities=14%  Similarity=0.089  Sum_probs=40.2

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECC
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP  334 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p  334 (416)
                      ..+.+.+.+.+++.|.++++++.|++|..    +   +|++++|+++.||.||+.+
T Consensus       218 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~----~---~v~~~~g~~~~~D~vi~a~  266 (409)
T 3h8l_A          218 PNSRKAVASIYNQLGIKLVHNFKIKEIRE----H---EIVDEKGNTIPADITILLP  266 (409)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEECS----S---EEEETTSCEEECSEEEEEC
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCceEEECC----C---eEEECCCCEEeeeEEEECC
Confidence            46778888888899999999999999853    2   3667899999999999543

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=97.85  E-value=8e-06  Score=82.92  Aligned_cols=38  Identities=29%  Similarity=0.426  Sum_probs=34.9

Q ss_pred             cccEEEECCChhHHHHHHHHhh-CCCeEEEEccCCCCCC
Q 014883           22 AFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPFYGS   59 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~-~G~~V~vlE~~~~~GG   59 (416)
                      +||+||||||.+|+++|.+|++ .|++|+||||.....+
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~~~   40 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDEN   40 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCCTT
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcccC
Confidence            5999999999999999999999 7999999999887643

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.82  E-value=1e-05  Score=80.95  Aligned_cols=51  Identities=10%  Similarity=0.155  Sum_probs=40.7

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (416)
                      .++.+.+.+.+++.|.+|++++.|++|..   ++++..|++ +|+++.||.||+.
T Consensus       236 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~---~~~v~~v~~-~g~~i~~D~Vi~a  286 (490)
T 2bc0_A          236 RDLTDLMAKNMEEHGIQLAFGETVKEVAG---NGKVEKIIT-DKNEYDVDMVILA  286 (490)
T ss_dssp             HHHHHHHHHHHHTTTCEEEETCCEEEEEC---SSSCCEEEE-SSCEEECSEEEEC
T ss_pred             HHHHHHHHHHHHhCCeEEEeCCEEEEEEc---CCcEEEEEE-CCcEEECCEEEEC
Confidence            46777888888899999999999999974   344445665 7889999999944

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=97.80  E-value=1.2e-05  Score=79.41  Aligned_cols=51  Identities=12%  Similarity=0.065  Sum_probs=40.3

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (416)
                      .++.+.+.+.+++.|.++++++.|++|..+   ++++.|++ +|+++.||.||+.
T Consensus       191 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~---~~v~~v~~-~~~~i~~d~vi~a  241 (447)
T 1nhp_A          191 KEFTDVLTEEMEANNITIATGETVERYEGD---GRVQKVVT-DKNAYDADLVVVA  241 (447)
T ss_dssp             HHHHHHHHHHHHTTTEEEEESCCEEEEECS---SBCCEEEE-SSCEEECSEEEEC
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEcc---CcEEEEEE-CCCEEECCEEEEC
Confidence            467788888888899999999999999753   44445665 6678999999943

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=97.80  E-value=1.4e-05  Score=81.59  Aligned_cols=38  Identities=21%  Similarity=0.366  Sum_probs=35.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhh-CCCeEEEEccCCCC
Q 014883           20 PTAFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPFY   57 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~-~G~~V~vlE~~~~~   57 (416)
                      +.+||+||||+|.+|+++|.+|++ .|++|+|||+....
T Consensus        22 ~~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~   60 (587)
T 1gpe_A           22 GKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (587)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             cccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCcc
Confidence            457999999999999999999999 89999999998655

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=97.78  E-value=1.8e-05  Score=80.13  Aligned_cols=39  Identities=28%  Similarity=0.398  Sum_probs=35.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhC-CCeEEEEccCCCCCC
Q 014883           21 TAFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFYGS   59 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~-G~~V~vlE~~~~~GG   59 (416)
                      ..||+||||+|.+|+++|.+|+++ |++|+|||+.....+
T Consensus        12 ~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~~~   51 (546)
T 2jbv_A           12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRG   51 (546)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCCTT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcCCC
Confidence            479999999999999999999998 999999999977643

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.77  E-value=1.6e-05  Score=77.59  Aligned_cols=48  Identities=23%  Similarity=0.266  Sum_probs=40.3

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (416)
                      .++.+.+.+.+++.|.++++++.|++|. +  +    .|++.+|+++.||.||+.
T Consensus       187 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~-~--~----~v~~~~g~~i~~D~vi~a  234 (408)
T 2gqw_A          187 ATLADFVARYHAAQGVDLRFERSVTGSV-D--G----VVLLDDGTRIAADMVVVG  234 (408)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEE-T--T----EEEETTSCEEECSEEEEC
T ss_pred             HHHHHHHHHHHHHcCcEEEeCCEEEEEE-C--C----EEEECCCCEEEcCEEEEC
Confidence            3577788888889999999999999997 4  3    567789999999999954

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=97.75  E-value=1.7e-05  Score=78.11  Aligned_cols=36  Identities=17%  Similarity=0.382  Sum_probs=33.8

Q ss_pred             cccEEEECCChhHHHHHHHHhh---CCCeEEEEccCCCC
Q 014883           22 AFDLIVIGTGLPESVISAAASA---SGKSVLHLDPNPFY   57 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~---~G~~V~vlE~~~~~   57 (416)
                      +.||||||||++||+||..|++   .|++|+|+|++++.
T Consensus         4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~   42 (437)
T 3sx6_A            4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYF   42 (437)
T ss_dssp             SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEE
T ss_pred             CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCC
Confidence            4699999999999999999999   89999999999865

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.70  E-value=2.5e-05  Score=75.06  Aligned_cols=35  Identities=17%  Similarity=0.225  Sum_probs=32.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (416)
                      -||||||||.+|++||..|++.| +|+|+|+++..+
T Consensus         9 ~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~   43 (367)
T 1xhc_A            9 SKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPY   43 (367)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCC
T ss_pred             CcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCc
Confidence            59999999999999999999999 999999998653

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=97.68  E-value=2.4e-05  Score=79.66  Aligned_cols=36  Identities=11%  Similarity=0.202  Sum_probs=34.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYG   58 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~G   58 (416)
                      .||+|||||++||+||..|++.  |++|+|+|+++++|
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~   39 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVS   39 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCcc
Confidence            4899999999999999999998  89999999999987

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=97.67  E-value=3.1e-05  Score=75.58  Aligned_cols=52  Identities=12%  Similarity=0.145  Sum_probs=43.4

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (416)
                      .++.+.+.+.+++.|.++++++.|++|..+   +++.+|++.+|+++.||.||+.
T Consensus       185 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~---~~~~~v~~~dg~~i~aD~Vv~a  236 (410)
T 3ef6_A          185 RRIGAWLRGLLTELGVQVELGTGVVGFSGE---GQLEQVMASDGRSFVADSALIC  236 (410)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEECS---SSCCEEEETTSCEEECSEEEEC
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEecc---CcEEEEEECCCCEEEcCEEEEe
Confidence            456777888888899999999999999754   3556788899999999999954

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=97.52  E-value=2.4e-05  Score=78.43  Aligned_cols=42  Identities=17%  Similarity=0.155  Sum_probs=30.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (416)
                      ...|||||||+|.+||++|+.|.++|...+++|+.+..|+..
T Consensus        37 ~~i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~   78 (501)
T 4b63_A           37 DELHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPK   78 (501)
T ss_dssp             TSCEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCC
T ss_pred             CCcCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcc
Confidence            345899999999999999999999877666666666555543

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=97.47  E-value=6.8e-05  Score=75.13  Aligned_cols=38  Identities=11%  Similarity=0.269  Sum_probs=34.4

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      ..++..|||||||++|+.+|..|++.+++|+|+|++++
T Consensus        39 ~~~KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~   76 (502)
T 4g6h_A           39 HSDKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSY   76 (502)
T ss_dssp             SCSSCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSE
T ss_pred             CCCCCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCC
Confidence            34456899999999999999999999999999999975

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=97.45  E-value=9.9e-05  Score=71.32  Aligned_cols=39  Identities=10%  Similarity=0.243  Sum_probs=35.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      ++..|+|||||++|++||..|++.|.+|+|+|++++++.
T Consensus         8 ~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y   46 (385)
T 3klj_A            8 KSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPY   46 (385)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCB
T ss_pred             CCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCc
Confidence            356899999999999999999999999999999999873

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=97.38  E-value=9.8e-05  Score=71.57  Aligned_cols=39  Identities=18%  Similarity=0.316  Sum_probs=33.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCC--CeEEEEccCCCCCCcc
Q 014883           23 FDLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSHF   61 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G--~~V~vlE~~~~~GG~~   61 (416)
                      ..|||||||.+|++||.+|++.|  .+|+|+|+++....+.
T Consensus         3 KkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p   43 (401)
T 3vrd_B            3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCY   43 (401)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECST
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCcc
Confidence            47999999999999999999887  5899999998765443

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=97.32  E-value=0.00013  Score=71.68  Aligned_cols=48  Identities=10%  Similarity=0.142  Sum_probs=39.5

Q ss_pred             cchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 014883          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (416)
Q Consensus       278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~  332 (416)
                      -.++.+.+.+..++.|.++++++.|+++.    ..   .|++++|+++.||.||+
T Consensus       187 d~~~~~~~~~~l~~~gV~i~~~~~v~~~~----~~---~v~~~~g~~~~~D~vl~  234 (437)
T 4eqs_A          187 DADMNQPILDELDKREIPYRLNEEINAIN----GN---EITFKSGKVEHYDMIIE  234 (437)
T ss_dssp             CGGGGHHHHHHHHHTTCCEEESCCEEEEE----TT---EEEETTSCEEECSEEEE
T ss_pred             cchhHHHHHHHhhccceEEEeccEEEEec----CC---eeeecCCeEEeeeeEEE
Confidence            35677778888889999999999999874    33   36678999999999994

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=97.26  E-value=0.00015  Score=71.02  Aligned_cols=34  Identities=15%  Similarity=0.313  Sum_probs=31.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCC--CeEEEEccCCCC
Q 014883           24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNPFY   57 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G--~~V~vlE~~~~~   57 (416)
                      .|||||||++|++||..|++.+  ++|+|+|++++.
T Consensus         4 ~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~   39 (430)
T 3hyw_A            4 HVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYF   39 (430)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEE
T ss_pred             cEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCC
Confidence            7999999999999999999876  899999999863

>2e1m_B L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=96.71  E-value=0.00048  Score=55.23  Aligned_cols=53  Identities=4%  Similarity=-0.066  Sum_probs=44.2

Q ss_pred             cEEEcCEEEEC-CCCCCCCCCCCchhhhhhhhhhccccCCcceEEEEEEEecCCCC
Q 014883          323 QDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK  377 (416)
Q Consensus       323 ~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i~i~~~p~~  377 (416)
                      ++++||+||++ |...+..  +.++|+||..+.+..++..+|.+.|.++.|++||=
T Consensus         4 ~~~~Ad~VIvTvP~~vL~~--I~F~P~LP~~k~~Ai~~l~~g~~~Kv~l~f~~~FW   57 (130)
T 2e1m_B            4 QTWTGDLAIVTIPFSSLRF--VKVTPPFSYKKRRAVIETHYDQATKVLLEFSRRWW   57 (130)
T ss_dssp             EEEEESEEEECSCHHHHTT--SEEESCCCHHHHHHHHHCCEECEEEEEEEESSCGG
T ss_pred             eEEEcCEEEEcCCHHHHhc--CcCCCCCCHHHHHHHHhCCCcceeEEEEEECCCCC
Confidence            47899999976 4444454  46889999999999898999999999999999974

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=96.39  E-value=0.003  Score=62.00  Aligned_cols=39  Identities=23%  Similarity=0.175  Sum_probs=36.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (416)
                      ..+++|||+|..|+.+|..|++.|.+|+++|+++++..+
T Consensus       149 ~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~  187 (447)
T 1nhp_A          149 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGV  187 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccc
Confidence            468999999999999999999999999999999988764

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=96.36  E-value=0.0028  Score=61.04  Aligned_cols=39  Identities=15%  Similarity=0.003  Sum_probs=36.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (416)
                      .+|+|||+|..|+-+|..|++.|.+|+++|+++++..+.
T Consensus       147 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~  185 (385)
T 3klj_A          147 GKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLERQ  185 (385)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhh
Confidence            479999999999999999999999999999999987664

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.25  E-value=0.0046  Score=51.18  Aligned_cols=34  Identities=35%  Similarity=0.488  Sum_probs=31.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ...|+|||+|.-|+..|..|.+.|++|+++|++.
T Consensus        19 ~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~   52 (155)
T 2g1u_A           19 SKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNE   52 (155)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            3579999999999999999999999999999874

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.22  E-value=0.0047  Score=49.70  Aligned_cols=33  Identities=18%  Similarity=0.372  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ..|+|||+|..|...|..|++.|++|+++|++.
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~   37 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   37 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            479999999999999999999999999999854

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=96.14  E-value=0.0044  Score=57.46  Aligned_cols=37  Identities=16%  Similarity=0.053  Sum_probs=34.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      ..|+|||+|..|+-+|..|++.|.+|+++|+++++-.
T Consensus       146 k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~~~  182 (312)
T 4gcm_A          146 KRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRA  182 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEecccccCc
Confidence            3799999999999999999999999999999988643

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.00  E-value=0.0096  Score=48.28  Aligned_cols=33  Identities=15%  Similarity=0.244  Sum_probs=31.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      -.|+|||.|--|...|..|.+.|++|+++|++.
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~   40 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSR   40 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            479999999999999999999999999999974

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=95.98  E-value=0.008  Score=49.51  Aligned_cols=34  Identities=18%  Similarity=0.184  Sum_probs=31.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ...++|+|+|-.|...|..|.+.|++|+++|+++
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~   36 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            4579999999999999999999999999999863

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=95.96  E-value=0.0055  Score=60.38  Aligned_cols=37  Identities=19%  Similarity=0.168  Sum_probs=34.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      .+|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       172 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  208 (458)
T 1lvl_A          172 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILP  208 (458)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSST
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCcccc
Confidence            4799999999999999999999999999999999875

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=95.92  E-value=0.0074  Score=57.90  Aligned_cols=39  Identities=15%  Similarity=0.202  Sum_probs=35.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (416)
                      .+++|||+|..|+-+|..|++.|.+|+++|+++++..+.
T Consensus       146 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~  184 (384)
T 2v3a_A          146 RRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGL  184 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhcc
Confidence            479999999999999999999999999999999887654

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=95.92  E-value=0.0079  Score=48.69  Aligned_cols=33  Identities=30%  Similarity=0.488  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ..++|+|+|.-|...|..|+++|++|+++|++.
T Consensus         7 ~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~   39 (141)
T 3llv_A            7 YEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK   39 (141)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            479999999999999999999999999999863

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=95.90  E-value=0.0068  Score=59.82  Aligned_cols=37  Identities=22%  Similarity=0.170  Sum_probs=34.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      .+|+|||+|..|+-+|..|++.|.+|+|+|+.+++..
T Consensus       170 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  206 (464)
T 2eq6_A          170 KRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILP  206 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCcccc
Confidence            4799999999999999999999999999999998765

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=95.85  E-value=0.0074  Score=59.36  Aligned_cols=37  Identities=22%  Similarity=0.161  Sum_probs=34.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      .+|+|||+|..|+.+|..|++.|.+|+++|+++++..
T Consensus       168 ~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~  204 (455)
T 2yqu_A          168 KRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILP  204 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCcccc
Confidence            4799999999999999999999999999999988754

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=95.84  E-value=0.0073  Score=59.40  Aligned_cols=37  Identities=27%  Similarity=0.198  Sum_probs=34.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      .+|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  207 (455)
T 1ebd_A          171 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILS  207 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccc
Confidence            5899999999999999999999999999999998765

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.83  E-value=0.0083  Score=51.02  Aligned_cols=36  Identities=19%  Similarity=0.280  Sum_probs=32.2

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhC-CCeEEEEccCC
Q 014883           20 PTAFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNP   55 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~-G~~V~vlE~~~   55 (416)
                      ...-.|+|||+|..|...|..|.+. |++|+++|++.
T Consensus        37 ~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~   73 (183)
T 3c85_A           37 PGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIRE   73 (183)
T ss_dssp             CTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence            3345799999999999999999999 99999999864

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=95.80  E-value=0.0077  Score=57.51  Aligned_cols=37  Identities=16%  Similarity=0.259  Sum_probs=34.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      .+++|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  180 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG  180 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeecc
Confidence            4799999999999999999999999999999998866

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=95.78  E-value=0.0087  Score=59.22  Aligned_cols=38  Identities=24%  Similarity=0.316  Sum_probs=35.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (416)
                      ..|+|||+|..|+-+|..|++.|.+|+++|+++++...
T Consensus       184 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~  221 (478)
T 1v59_A          184 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS  221 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCccccc
Confidence            47999999999999999999999999999999998763

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=95.65  E-value=0.029  Score=54.35  Aligned_cols=41  Identities=20%  Similarity=0.287  Sum_probs=37.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCe--EEEEccCCCCCCc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKS--VLHLDPNPFYGSH   60 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~--V~vlE~~~~~GG~   60 (416)
                      +.++||||||||++||+||..|++.|++  |+|+|+++.++..
T Consensus         7 ~~~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~   49 (415)
T 3lxd_A            7 AERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYE   49 (415)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBC
T ss_pred             CCCCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcC
Confidence            3468999999999999999999999998  9999999987643

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=95.58  E-value=0.013  Score=45.38  Aligned_cols=32  Identities=28%  Similarity=0.390  Sum_probs=30.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCC-CeEEEEccC
Q 014883           23 FDLIVIGTGLPESVISAAASASG-KSVLHLDPN   54 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G-~~V~vlE~~   54 (416)
                      ..|+|+|+|..|...+..|.+.| ++|.+++++
T Consensus         6 ~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~   38 (118)
T 3ic5_A            6 WNICVVGAGKIGQMIAALLKTSSNYSVTVADHD   38 (118)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSEEEEEEESC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence            47999999999999999999999 999999986

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=95.58  E-value=0.012  Score=56.97  Aligned_cols=38  Identities=24%  Similarity=0.355  Sum_probs=35.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (416)
                      ..|+|||+|..|+-+|..|++.|.+|+++|+.+++..+
T Consensus       146 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~  183 (408)
T 2gqw_A          146 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSR  183 (408)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccc
Confidence            57999999999999999999999999999999988765

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=95.57  E-value=0.011  Score=58.08  Aligned_cols=37  Identities=11%  Similarity=0.045  Sum_probs=34.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      ..|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       168 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  204 (450)
T 1ges_A          168 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLP  204 (450)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhh
Confidence            4799999999999999999999999999999988754

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=95.54  E-value=0.011  Score=54.66  Aligned_cols=35  Identities=20%  Similarity=0.221  Sum_probs=32.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (416)
                      ..|+|||+|..|+-+|..|++.|.+|+++|+.+..
T Consensus       153 ~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~  187 (314)
T 4a5l_A          153 KVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAF  187 (314)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CeEEEECCChHHHHHHHHHHHhCCeeeeecccccc
Confidence            47999999999999999999999999999987653

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=95.48  E-value=0.015  Score=53.40  Aligned_cols=36  Identities=28%  Similarity=0.318  Sum_probs=32.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      |....|.|||+|.-|...|..|+++|++|+++|++.
T Consensus         2 m~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (283)
T 4e12_A            2 TGITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINT   37 (283)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            334579999999999999999999999999999875

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=95.37  E-value=0.014  Score=57.53  Aligned_cols=37  Identities=14%  Similarity=0.068  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       167 ~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~  203 (463)
T 2r9z_A          167 KRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLF  203 (463)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCcccc
Confidence            3799999999999999999999999999999988753

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=95.29  E-value=0.017  Score=53.75  Aligned_cols=47  Identities=13%  Similarity=0.104  Sum_probs=33.6

Q ss_pred             CCCCC-CCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           10 LPVPP-YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        10 ~~~~~-~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      |+.++ .+..+.....|.|||+|.-|...|..|+++|++|++++++..
T Consensus         8 ~~~~~~~~~~~~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   55 (310)
T 3doj_A            8 HHHSSGLVPRGSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLS   55 (310)
T ss_dssp             ----------CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             cccccccCcccccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            44444 333334446899999999999999999999999999998753

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=95.22  E-value=0.011  Score=58.58  Aligned_cols=37  Identities=24%  Similarity=0.328  Sum_probs=34.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      .+|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       187 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  223 (480)
T 3cgb_A          187 EDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGT  223 (480)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTS
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhh
Confidence            5799999999999999999999999999999988766

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=95.20  E-value=0.031  Score=53.11  Aligned_cols=40  Identities=20%  Similarity=0.341  Sum_probs=36.2

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      +.++||||||||++||++|+.|+++|++|+|||+++..+|
T Consensus        15 ~~~~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~~~~g   54 (382)
T 1ryi_A           15 KRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGR   54 (382)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTTT
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCcc
Confidence            4569999999999999999999999999999999975554

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=95.18  E-value=0.018  Score=54.78  Aligned_cols=40  Identities=15%  Similarity=0.149  Sum_probs=32.2

Q ss_pred             CCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           16 PPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        16 ~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      .|+|+....|.|||.|.-|...|..|+++|++|.+++++.
T Consensus        16 ~~~Mm~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~   55 (358)
T 4e21_A           16 ENLYFQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNV   55 (358)
T ss_dssp             ------CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             chhhhcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            3566777899999999999999999999999999999874

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=95.15  E-value=0.017  Score=57.28  Aligned_cols=38  Identities=21%  Similarity=0.211  Sum_probs=35.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (416)
                      ..|+|||+|..|+-+|..|++.|.+|+++|+++++-.+
T Consensus       195 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~  232 (490)
T 2bc0_A          195 KRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAG  232 (490)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccchhhh
Confidence            47999999999999999999999999999999987653

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=95.14  E-value=0.02  Score=55.78  Aligned_cols=38  Identities=26%  Similarity=0.214  Sum_probs=35.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (416)
                      ..|+|||+|..|+-+|..|++.|.+|+++|+.+++..+
T Consensus       150 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~  187 (431)
T 1q1r_A          150 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLER  187 (431)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccc
Confidence            47999999999999999999999999999999987654

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=95.13  E-value=0.02  Score=56.59  Aligned_cols=37  Identities=19%  Similarity=0.249  Sum_probs=34.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      ..|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       179 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  215 (474)
T 1zmd_A          179 EKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGG  215 (474)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSC
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCC
Confidence            4799999999999999999999999999999998865

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=95.10  E-value=0.019  Score=56.53  Aligned_cols=37  Identities=16%  Similarity=0.087  Sum_probs=34.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      -.|+|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus       172 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  208 (464)
T 2a8x_A          172 KSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALP  208 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCcccc
Confidence            4799999999999999999999999999999998765

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=95.09  E-value=0.019  Score=53.47  Aligned_cols=33  Identities=24%  Similarity=0.365  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      -.|.|||||.-|..-|..++.+|++|+++|.++
T Consensus         7 ~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~   39 (319)
T 3ado_A            7 GDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEP   39 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEECCH
Confidence            479999999999999999999999999999875

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=95.08  E-value=0.022  Score=56.64  Aligned_cols=38  Identities=18%  Similarity=0.112  Sum_probs=35.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (416)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus       175 k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~  212 (492)
T 3ic9_A          175 KSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANL  212 (492)
T ss_dssp             SEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTC
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc
Confidence            47999999999999999999999999999999998654

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=95.07  E-value=0.016  Score=57.42  Aligned_cols=37  Identities=16%  Similarity=0.108  Sum_probs=34.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      ..++|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~  222 (482)
T 1ojt_A          186 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQ  222 (482)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccc
Confidence            4799999999999999999999999999999998764

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=95.04  E-value=0.021  Score=55.28  Aligned_cols=38  Identities=24%  Similarity=0.274  Sum_probs=35.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (416)
                      ..|+|||+|..|+-+|..|++.|.+|+++|+.+++-.+
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~  181 (410)
T 3ef6_A          144 TRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVR  181 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccchh
Confidence            47999999999999999999999999999999987654

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=95.01  E-value=0.022  Score=50.93  Aligned_cols=43  Identities=19%  Similarity=0.224  Sum_probs=31.7

Q ss_pred             CCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           13 PPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        13 ~~~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      +.+.........|.|||+|.-|...|..|+++|++|++++++.
T Consensus        10 ~~~~~~~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~   52 (245)
T 3dtt_A           10 HHHENLYFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDP   52 (245)
T ss_dssp             ---------CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccccccccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            3344444455689999999999999999999999999999864

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=94.99  E-value=0.029  Score=54.96  Aligned_cols=34  Identities=15%  Similarity=0.179  Sum_probs=32.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      ..|.|||+|.-|...|..|+++|++|+++|.+..
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   88 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ   88 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence            4799999999999999999999999999999876

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=94.94  E-value=0.025  Score=55.46  Aligned_cols=37  Identities=22%  Similarity=0.260  Sum_probs=35.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (416)
                      +|+|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus       150 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~  186 (449)
T 3kd9_A          150 NVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRR  186 (449)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchh
Confidence            8999999999999999999999999999999987765

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=94.87  E-value=0.028  Score=51.91  Aligned_cols=33  Identities=33%  Similarity=0.477  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ..|.|||+|.-|...|..|+++|++|+++|++.
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   48 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   48 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            369999999999999999999999999999874

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=94.87  E-value=0.023  Score=45.73  Aligned_cols=32  Identities=31%  Similarity=0.331  Sum_probs=30.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (416)
                      ..|+|+|+|..|...|..|++.|++|.++|++
T Consensus         7 ~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~   38 (144)
T 2hmt_A            7 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDIN   38 (144)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            36999999999999999999999999999986

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=94.86  E-value=0.022  Score=53.86  Aligned_cols=36  Identities=11%  Similarity=0.048  Sum_probs=29.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (416)
                      ..|+|||+|.+|+-+|..|++.|.+|+++|+++++.
T Consensus       167 ~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~  202 (369)
T 3d1c_A          167 GQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLN  202 (369)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECC-----
T ss_pred             CEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCC
Confidence            379999999999999999999999999999988765

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=94.86  E-value=0.026  Score=55.41  Aligned_cols=34  Identities=18%  Similarity=0.199  Sum_probs=31.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ...|.|||.|.+|+++|..|++.|++|.+.|+++
T Consensus         9 ~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~   42 (451)
T 3lk7_A            9 NKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP   42 (451)
T ss_dssp             TCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            3579999999999999999999999999999976

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=94.85  E-value=0.017  Score=56.96  Aligned_cols=37  Identities=19%  Similarity=0.154  Sum_probs=34.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      ..|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       178 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~  214 (470)
T 1dxl_A          178 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVP  214 (470)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccc
Confidence            4799999999999999999999999999999998765

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=94.81  E-value=0.026  Score=51.98  Aligned_cols=36  Identities=14%  Similarity=0.083  Sum_probs=33.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (416)
                      ..|+|||+|..|+-+|..|++.|.+|+++++++++.
T Consensus       144 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~  179 (311)
T 2q0l_A          144 KEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFR  179 (311)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccC
Confidence            579999999999999999999999999999998873

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=94.79  E-value=0.025  Score=55.90  Aligned_cols=37  Identities=11%  Similarity=0.073  Sum_probs=34.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      -.++|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~  222 (479)
T 2hqm_A          186 KKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLR  222 (479)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCcccc
Confidence            4799999999999999999999999999999998754

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=94.73  E-value=0.026  Score=56.17  Aligned_cols=37  Identities=8%  Similarity=0.020  Sum_probs=34.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      -.|+|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus       177 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~  213 (500)
T 1onf_A          177 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILR  213 (500)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCT
T ss_pred             CeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCc
Confidence            4799999999999999999999999999999998764

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=94.72  E-value=0.027  Score=53.20  Aligned_cols=35  Identities=26%  Similarity=0.301  Sum_probs=31.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ....|.|||+|..|...|..|+++|++|.+++++.
T Consensus         3 ~~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~   37 (359)
T 1bg6_A            3 ESKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   37 (359)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            34589999999999999999999999999998863

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=94.69  E-value=0.023  Score=49.70  Aligned_cols=32  Identities=13%  Similarity=0.234  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      .|+|||+|.-|...|..|.++|++|+++|++.
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~   33 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDR   33 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            59999999999999999999999999999863

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=94.67  E-value=0.033  Score=53.72  Aligned_cols=40  Identities=25%  Similarity=0.270  Sum_probs=36.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (416)
                      ..|+|||+|..|+-+|..|++.|.+|+++|+.+++..+..
T Consensus       143 ~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~  182 (404)
T 3fg2_P          143 KHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARVV  182 (404)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhhcc
Confidence            4699999999999999999999999999999998876543

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=94.65  E-value=0.033  Score=56.01  Aligned_cols=34  Identities=18%  Similarity=0.160  Sum_probs=32.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      ..|+|||+|.+|+-+|..|++.|.+|+|+++.++
T Consensus       179 krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  212 (540)
T 3gwf_A          179 RRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQ  212 (540)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCC
T ss_pred             ceEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            4799999999999999999999999999999876

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=94.59  E-value=0.032  Score=54.97  Aligned_cols=37  Identities=24%  Similarity=0.257  Sum_probs=34.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      ..|+|||+|..|+-+|..|++.|.+|+++|+.+++-.
T Consensus       177 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  213 (467)
T 1zk7_A          177 ERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFR  213 (467)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccCC
Confidence            4799999999999999999999999999999988754

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=94.59  E-value=0.03  Score=51.56  Aligned_cols=35  Identities=20%  Similarity=0.120  Sum_probs=33.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (416)
                      ..|+|||+|.+|+-+|..|++.|.+|+++++.+++
T Consensus       145 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  179 (310)
T 1fl2_A          145 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEM  179 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCccc
Confidence            37999999999999999999999999999999887

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=94.57  E-value=0.026  Score=55.11  Aligned_cols=38  Identities=11%  Similarity=0.135  Sum_probs=35.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (416)
                      .++|||+|..|+-.|..|++.|.+|+++|+.+++....
T Consensus       149 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~~  186 (437)
T 4eqs_A          149 KVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLM  186 (437)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTTS
T ss_pred             EEEEECCccchhhhHHHHHhcCCcceeeeeeccccccc
Confidence            79999999999999999999999999999999886543

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=94.53  E-value=0.033  Score=54.89  Aligned_cols=37  Identities=19%  Similarity=0.249  Sum_probs=34.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      ..++|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       175 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  211 (468)
T 2qae_A          175 KTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAP  211 (468)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCcccc
Confidence            4799999999999999999999999999999998765

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=94.53  E-value=0.031  Score=54.78  Aligned_cols=37  Identities=19%  Similarity=0.150  Sum_probs=34.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      ..++|||+|..|+-+|..|++.|.+|+++|+.+++-.
T Consensus       150 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  186 (452)
T 2cdu_A          150 KTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLY  186 (452)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTT
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhh
Confidence            4799999999999999999999999999999988755

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=94.48  E-value=0.032  Score=55.12  Aligned_cols=34  Identities=29%  Similarity=0.471  Sum_probs=31.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ...|.|||+|.-|+..|..|+++|++|+++|.+.
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~   41 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQ   41 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            4689999999999999999999999999999864

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=94.45  E-value=0.031  Score=55.05  Aligned_cols=37  Identities=11%  Similarity=0.037  Sum_probs=33.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      ..|+|||+|.+|+-.|..|++.|.+|+++++++++-+
T Consensus       198 k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~~~  234 (464)
T 2xve_A          198 KTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPMG  234 (464)
T ss_dssp             SEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCCCC
T ss_pred             CEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCCCC
Confidence            4699999999999999999999999999999887543

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=94.42  E-value=0.038  Score=55.68  Aligned_cols=36  Identities=25%  Similarity=0.320  Sum_probs=33.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (416)
                      ...|+|||+|.+|+-+|..|++.|.+|+|+++.+++
T Consensus       185 ~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~~  220 (545)
T 3uox_A          185 GKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNW  220 (545)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCCC
T ss_pred             CCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCCc
Confidence            357999999999999999999999999999998763

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=94.40  E-value=0.034  Score=51.69  Aligned_cols=36  Identities=19%  Similarity=0.162  Sum_probs=33.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (416)
                      ..|+|||+|..|+-+|..|++.|.+|+++++++++.
T Consensus       160 ~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~  195 (333)
T 1vdc_A          160 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFR  195 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCC
T ss_pred             CeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCC
Confidence            479999999999999999999999999999998763

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=94.37  E-value=0.038  Score=52.38  Aligned_cols=34  Identities=12%  Similarity=0.217  Sum_probs=31.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ...|.|||+|.-|.+.|..|+++|++|.++++++
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~   62 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYES   62 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCH
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            4589999999999999999999999999999863

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=94.36  E-value=0.044  Score=53.31  Aligned_cols=34  Identities=29%  Similarity=0.371  Sum_probs=31.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      +..+.|||.|..||..|..|+++|++|+.+|-+.
T Consensus        21 m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~   54 (444)
T 3vtf_A           21 MASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNP   54 (444)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            4589999999999999999999999999999874

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=94.34  E-value=0.037  Score=48.84  Aligned_cols=36  Identities=14%  Similarity=0.253  Sum_probs=31.1

Q ss_pred             CCcccEEEECC-ChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           20 PTAFDLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        20 ~~~~DViIIGa-Gl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      .....|+|.|| |.-|...+..|+++|++|.++.++.
T Consensus        19 l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   55 (236)
T 3e8x_A           19 FQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNE   55 (236)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             cCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECCh
Confidence            34457999998 9999999999999999999998864

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=94.32  E-value=0.094  Score=50.11  Aligned_cols=38  Identities=24%  Similarity=0.502  Sum_probs=35.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (416)
                      .++||||||||++||++|+.|+++|++|+||||++..+
T Consensus         3 ~~~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~~~~   40 (397)
T 2oln_A            3 ESYDVVVVGGGPVGLATAWQVAERGHRVLVLERHTFFN   40 (397)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCC
Confidence            46899999999999999999999999999999998765

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=94.31  E-value=0.037  Score=51.12  Aligned_cols=36  Identities=17%  Similarity=0.074  Sum_probs=33.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (416)
                      ..|+|||+|.+|+-.|..|++.|.+|+++++++++.
T Consensus       146 ~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~  181 (320)
T 1trb_A          146 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR  181 (320)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCccc
Confidence            479999999999999999999999999999998763

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=94.29  E-value=0.039  Score=51.23  Aligned_cols=36  Identities=14%  Similarity=0.065  Sum_probs=33.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (416)
                      ..|+|||+|.+|+-+|..|++.|.+|+++++++++.
T Consensus       153 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~  188 (325)
T 2q7v_A          153 KKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLR  188 (325)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCC
Confidence            379999999999999999999999999999998764

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=94.28  E-value=0.049  Score=47.41  Aligned_cols=35  Identities=14%  Similarity=0.243  Sum_probs=31.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      ...|.|||+|.-|.+.|..|+++|++|.+++++..
T Consensus        19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            34799999999999999999999999999998865

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=94.27  E-value=0.038  Score=51.58  Aligned_cols=36  Identities=19%  Similarity=0.159  Sum_probs=33.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (416)
                      ..|+|||+|..|+-.|..|++.|.+|+++++++++.
T Consensus       156 ~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~  191 (335)
T 2a87_A          156 QDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFR  191 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCS
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCC
Confidence            479999999999999999999999999999998773

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=94.25  E-value=0.11  Score=45.81  Aligned_cols=50  Identities=18%  Similarity=0.092  Sum_probs=40.9

Q ss_pred             hHHHHHHHHHHhc-CcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 014883          280 ELPQAFCRRAAVK-GCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (416)
Q Consensus       280 ~l~~al~r~~~~~-Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~  332 (416)
                      .+.+.|.+.++.. |.+++ +++|++|..+  ++++++|++.+|++++||.||.
T Consensus        69 ~~~~~l~~~~~~~~gv~i~-~~~v~~i~~~--~~~v~~v~~~~g~~i~a~~VV~  119 (232)
T 2cul_A           69 AFHARAKYLLEGLRPLHLF-QATATGLLLE--GNRVVGVRTWEGPPARGEKVVL  119 (232)
T ss_dssp             HHHHHHHHHHHTCTTEEEE-ECCEEEEEEE--TTEEEEEEETTSCCEECSEEEE
T ss_pred             HHHHHHHHHHHcCCCcEEE-EeEEEEEEEe--CCEEEEEEECCCCEEECCEEEE
Confidence            5667777777776 88888 6899999887  6777788888898999999994

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=94.23  E-value=0.039  Score=55.65  Aligned_cols=36  Identities=14%  Similarity=0.084  Sum_probs=33.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      .|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       153 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  188 (565)
T 3ntd_A          153 HATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMT  188 (565)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSCT
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccch
Confidence            799999999999999999999999999999987754

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=94.23  E-value=0.04  Score=51.72  Aligned_cols=32  Identities=16%  Similarity=0.311  Sum_probs=30.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (416)
                      ..|.|||+|--|.+.|..|+++|++|++++++
T Consensus         4 mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~   35 (335)
T 3ghy_A            4 TRICIVGAGAVGGYLGARLALAGEAINVLARG   35 (335)
T ss_dssp             CCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence            57999999999999999999999999999974

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=94.22  E-value=0.036  Score=51.57  Aligned_cols=37  Identities=8%  Similarity=0.211  Sum_probs=34.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      ..|+|||+|..|+-+|..|++.|.+|+++++++++..
T Consensus       153 ~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~  189 (335)
T 2zbw_A          153 KRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRA  189 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCCS
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccCc
Confidence            4799999999999999999999999999999988754

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=94.20  E-value=0.031  Score=54.66  Aligned_cols=36  Identities=19%  Similarity=0.142  Sum_probs=33.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (416)
                      ..|.|||.|.+|+++|..|++.|++|++.|.+...=
T Consensus         6 ~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~   41 (439)
T 2x5o_A            6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPP   41 (439)
T ss_dssp             CCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCT
T ss_pred             CEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcc
Confidence            469999999999999999999999999999987653

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=94.18  E-value=0.039  Score=55.61  Aligned_cols=36  Identities=17%  Similarity=0.182  Sum_probs=33.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (416)
                      ...|+|||+|.+|+-+|..|++.|.+|+|+++.+++
T Consensus       191 ~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~  226 (549)
T 4ap3_A          191 GKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANY  226 (549)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCC
T ss_pred             CCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCCc
Confidence            357999999999999999999999999999998763

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=94.16  E-value=0.036  Score=54.96  Aligned_cols=38  Identities=16%  Similarity=0.110  Sum_probs=35.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (416)
                      ..|+|||+|..|+-.|..|++.|.+|+++|+.+++...
T Consensus       199 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~  236 (491)
T 3urh_A          199 ASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILGG  236 (491)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecccccccc
Confidence            47999999999999999999999999999999988653

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=94.16  E-value=0.04  Score=53.93  Aligned_cols=35  Identities=9%  Similarity=0.004  Sum_probs=32.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCe-EEEEccCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKS-VLHLDPNPFY   57 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~-V~vlE~~~~~   57 (416)
                      .+|+|||+|.+|+-.|..|++.|.+ |+++++++.+
T Consensus       213 k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~~~  248 (447)
T 2gv8_A          213 ESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGD  248 (447)
T ss_dssp             CCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCS
T ss_pred             CEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCCCc
Confidence            4799999999999999999999999 9999998876

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=94.08  E-value=0.051  Score=49.53  Aligned_cols=33  Identities=21%  Similarity=0.225  Sum_probs=30.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      .|.|||+|..|...|..|+++|++|.+++++..
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~   34 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCcc
Confidence            589999999999999999999999999998764

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=94.07  E-value=0.048  Score=50.83  Aligned_cols=33  Identities=27%  Similarity=0.412  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ..|.|||+|--|.+.|..|+++|++|+++.+++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence            479999999999999999999999999999875

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=94.07  E-value=0.052  Score=50.89  Aligned_cols=33  Identities=15%  Similarity=0.194  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~-~V~vlE~~~   55 (416)
                      ..|.|||||..|.+.|..|+++|+ +|.++|.+.
T Consensus        10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~   43 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   43 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCh
Confidence            489999999999999999999998 999999875

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=94.06  E-value=0.062  Score=54.29  Aligned_cols=44  Identities=27%  Similarity=0.357  Sum_probs=39.4

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (416)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (416)
                      .+.+|||||||||++||++|+.|+++|++|+|||+++..||...
T Consensus        15 ~~~~~DVvVIGgGi~Gl~~A~~La~~G~~V~LlEk~d~~~GtS~   58 (561)
T 3da1_A           15 SEKQLDLLVIGGGITGAGIALDAQVRGIQTGLVEMNDFASGTSS   58 (561)
T ss_dssp             TTSCEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSSTTCSGGG
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCccc
Confidence            34579999999999999999999999999999999987777654

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=94.04  E-value=0.048  Score=53.85  Aligned_cols=37  Identities=14%  Similarity=0.065  Sum_probs=34.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      -.++|||+|..|+-.|..|++.|.+|+++++.+++..
T Consensus       188 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  224 (478)
T 3dk9_A          188 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLR  224 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred             ccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCcccc
Confidence            4799999999999999999999999999999988753

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=94.02  E-value=0.044  Score=54.01  Aligned_cols=34  Identities=18%  Similarity=0.106  Sum_probs=32.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhC-CC-eEEEEccCCC
Q 014883           23 FDLIVIGTGLPESVISAAASAS-GK-SVLHLDPNPF   56 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~-G~-~V~vlE~~~~   56 (416)
                      ..|.|||+|.-|+..|..|+++ |+ +|+++|.+..
T Consensus        19 mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           19 KKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            4799999999999999999999 99 9999999876

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=94.02  E-value=0.048  Score=50.33  Aligned_cols=33  Identities=21%  Similarity=0.364  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ..|.|||+|.-|...|..|+++|++|++++++.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   36 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP   36 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            379999999999999999999999999999864

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=94.02  E-value=0.039  Score=51.28  Aligned_cols=33  Identities=27%  Similarity=0.366  Sum_probs=30.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC-eEEEEccC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGK-SVLHLDPN   54 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~-~V~vlE~~   54 (416)
                      ...|.|||+|.-|...|..|+++|+ +|.+++++
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~   57 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA   57 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence            4589999999999999999999999 99999996

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=94.00  E-value=0.051  Score=50.23  Aligned_cols=34  Identities=24%  Similarity=0.290  Sum_probs=31.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ...|.|||+|.-|...|..|+++|++|++++++.
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   40 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNP   40 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            3579999999999999999999999999999874

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=93.99  E-value=0.057  Score=53.11  Aligned_cols=39  Identities=15%  Similarity=0.107  Sum_probs=35.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (416)
                      ..|+|||+|..|+-.|..|++.|.+|+++|+.+++-...
T Consensus       173 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~  211 (466)
T 3l8k_A          173 QDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITL  211 (466)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCCC
Confidence            479999999999999999999999999999999876543

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=93.97  E-value=0.05  Score=53.30  Aligned_cols=38  Identities=16%  Similarity=-0.001  Sum_probs=35.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (416)
                      ..++|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus       148 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~  185 (452)
T 3oc4_A          148 QTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPK  185 (452)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccccc
Confidence            46999999999999999999999999999999987654

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=93.95  E-value=0.053  Score=52.99  Aligned_cols=35  Identities=29%  Similarity=0.360  Sum_probs=32.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      ...+.|||+|.-|+..|..|+++|++|++++.+..
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~   42 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDAR   42 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            46899999999999999999999999999999865

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=93.92  E-value=0.046  Score=50.34  Aligned_cols=35  Identities=17%  Similarity=0.045  Sum_probs=32.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      ...|.|||.|.-|...|..|+++|++|++++++..
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   49 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIE   49 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            45899999999999999999999999999998864

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=93.90  E-value=0.047  Score=50.48  Aligned_cols=36  Identities=22%  Similarity=0.260  Sum_probs=33.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (416)
                      ..|+|||+|..|+-.|..|++.|.+|+++++++++.
T Consensus       156 ~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~  191 (319)
T 3cty_A          156 KRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYM  191 (319)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccC
Confidence            379999999999999999999999999999988764

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=93.90  E-value=0.037  Score=54.27  Aligned_cols=36  Identities=11%  Similarity=0.075  Sum_probs=32.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCC
Q 014883           22 AFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFY   57 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~   57 (416)
                      ...|+|||+|.+|+-+|..|++.  |.+|+++++++.+
T Consensus       227 ~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~  264 (463)
T 3s5w_A          227 PMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASAL  264 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSC
T ss_pred             CCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCC
Confidence            45899999999999999999999  9999999998764

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=93.85  E-value=0.051  Score=50.45  Aligned_cols=33  Identities=21%  Similarity=0.265  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ..|.|||+|--|.+.|..|+++|++|+++.++.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD   35 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence            479999999999999999999999999999875

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=93.81  E-value=0.11  Score=48.92  Aligned_cols=42  Identities=31%  Similarity=0.350  Sum_probs=37.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      ++||||||||++||++|+.|+++|++|+|||+++..+|...+
T Consensus         2 ~~dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~~~~~~~~~   43 (372)
T 2uzz_A            2 KYDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMPPHQHGSH   43 (372)
T ss_dssp             CEEEEESCTTHHHHHHHHHHHHTTCCEEEECSSCSSSSSSSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCC
Confidence            489999999999999999999999999999999888765443

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=93.80  E-value=0.074  Score=52.33  Aligned_cols=33  Identities=24%  Similarity=0.340  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ..|.|||+|.-|...|..|+++|++|+++|++.
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~   70 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARVGISVVAVESDP   70 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            469999999999999999999999999999875

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=93.79  E-value=0.054  Score=53.11  Aligned_cols=33  Identities=24%  Similarity=0.400  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ..|.|||+|..|+..|..|+++|++|++++++.
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~   35 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDR   35 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCH
Confidence            479999999999999999999999999999874

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=93.78  E-value=0.053  Score=50.30  Aligned_cols=37  Identities=22%  Similarity=0.168  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      ..|+|||+|.+|+-+|..|++.|.+|+++++.+++-.
T Consensus       174 ~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~  210 (338)
T 3itj_A          174 KPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRA  210 (338)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCC
Confidence            4699999999999999999999999999999988754

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=93.76  E-value=0.052  Score=50.67  Aligned_cols=40  Identities=15%  Similarity=0.265  Sum_probs=31.6

Q ss_pred             CCCCCCcccEEEECCChhHHHHHHHHhhCC----CeEEEEccCC
Q 014883           16 PPIEPTAFDLIVIGTGLPESVISAAASASG----KSVLHLDPNP   55 (416)
Q Consensus        16 ~~~~~~~~DViIIGaGl~GL~aA~~La~~G----~~V~vlE~~~   55 (416)
                      +.+++....|.|||+|.-|...|..|+++|    ++|.+++++.
T Consensus        16 ~~~~~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~   59 (322)
T 2izz_A           16 ENLYFQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDM   59 (322)
T ss_dssp             ------CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCT
T ss_pred             chhccCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCc
Confidence            345565668999999999999999999999    8999999875

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=93.74  E-value=0.059  Score=53.93  Aligned_cols=38  Identities=13%  Similarity=0.095  Sum_probs=35.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (416)
                      ..++|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~  252 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLI  252 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTC
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccccc
Confidence            57999999999999999999999999999999987653

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=93.66  E-value=0.12  Score=49.11  Aligned_cols=37  Identities=24%  Similarity=0.264  Sum_probs=35.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (416)
                      ++||||||||++||++|+.|+++|++|+|+|+++..+
T Consensus         3 ~~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~~~~   39 (389)
T 2gf3_A            3 HFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPH   39 (389)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence            5899999999999999999999999999999988766

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=93.64  E-value=0.065  Score=47.08  Aligned_cols=36  Identities=14%  Similarity=0.236  Sum_probs=32.4

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 014883           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (416)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (416)
                      +.....|+|||+|-.|...|..|.++|.+|+|++.+
T Consensus        28 ~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~   63 (223)
T 3dfz_A           28 DLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT   63 (223)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence            344578999999999999999999999999999874

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=93.58  E-value=0.064  Score=52.88  Aligned_cols=37  Identities=22%  Similarity=0.164  Sum_probs=34.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      ..|+|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus       181 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  217 (476)
T 3lad_A          181 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLP  217 (476)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc
Confidence            4799999999999999999999999999999998764

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=93.53  E-value=0.062  Score=50.65  Aligned_cols=37  Identities=11%  Similarity=0.115  Sum_probs=34.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      -.|+|||+|.+|+-+|..|++.|.+|+++++++++.+
T Consensus       164 ~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~  200 (360)
T 3ab1_A          164 KRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQG  200 (360)
T ss_dssp             CEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCC
Confidence            3799999999999999999999999999999987654

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=93.51  E-value=0.068  Score=49.11  Aligned_cols=33  Identities=30%  Similarity=0.370  Sum_probs=30.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      +..|.|||+|.-|..-|..|+ +|++|+++|++.
T Consensus        12 ~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~   44 (293)
T 1zej_A           12 HMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSE   44 (293)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCH
Confidence            468999999999999999999 999999999875

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=93.43  E-value=0.063  Score=52.40  Aligned_cols=32  Identities=25%  Similarity=0.428  Sum_probs=30.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      .|.|||+|..|+..|..|+++|++|++++++.
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~   33 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58999999999999999999999999999864

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=93.42  E-value=0.17  Score=50.26  Aligned_cols=35  Identities=11%  Similarity=0.188  Sum_probs=30.9

Q ss_pred             cccEEEECCChhHHHHHHHHhh---CCCeEEEEccCCC
Q 014883           22 AFDLIVIGTGLPESVISAAASA---SGKSVLHLDPNPF   56 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~---~G~~V~vlE~~~~   56 (416)
                      .+||||||||++||++|+.|++   +|++|+|+|+.+.
T Consensus         2 ~~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~~   39 (511)
T 2weu_A            2 IRSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNV   39 (511)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC---
T ss_pred             cceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCCC
Confidence            3699999999999999999999   9999999999864

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=93.40  E-value=0.078  Score=53.83  Aligned_cols=38  Identities=16%  Similarity=0.073  Sum_probs=35.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (416)
                      ..|+|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus       188 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~  225 (588)
T 3ics_A          188 RHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPP  225 (588)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccccc
Confidence            36999999999999999999999999999999987654

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=93.38  E-value=0.1  Score=47.98  Aligned_cols=34  Identities=21%  Similarity=0.380  Sum_probs=31.1

Q ss_pred             ccEEEEC-CChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           23 FDLIVIG-TGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        23 ~DViIIG-aGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      ..|.||| +|.-|.+.|..|+++|++|.+++++..
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~   56 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLRASGYPISILDREDW   56 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcc
Confidence            3699999 999999999999999999999998753

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=93.37  E-value=0.075  Score=50.99  Aligned_cols=34  Identities=26%  Similarity=0.317  Sum_probs=31.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      ..|+|||+|..|+.+|..|...|.+|+++|.+..
T Consensus       191 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  224 (405)
T 4dio_A          191 AKIFVMGAGVAGLQAIATARRLGAVVSATDVRPA  224 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTT
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            4799999999999999999999999999998863

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=93.31  E-value=0.18  Score=50.71  Aligned_cols=45  Identities=11%  Similarity=0.180  Sum_probs=34.9

Q ss_pred             CCCCCCCCCCcccEEEECCChhHHHHHHHHhh---CCCeEEEEccCCC
Q 014883           12 VPPYPPIEPTAFDLIVIGTGLPESVISAAASA---SGKSVLHLDPNPF   56 (416)
Q Consensus        12 ~~~~~~~~~~~~DViIIGaGl~GL~aA~~La~---~G~~V~vlE~~~~   56 (416)
                      ||+...+++..+||||||||++|++||+.|++   .|.+|+|||+.+.
T Consensus        15 ~~~~~~M~~~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~   62 (550)
T 2e4g_A           15 VPRGSHMSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDI   62 (550)
T ss_dssp             ------CCSCCCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCCC
T ss_pred             ccCCcccCCCCCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCCC
Confidence            34444443457899999999999999999999   9999999999753

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=93.29  E-value=0.076  Score=49.42  Aligned_cols=33  Identities=21%  Similarity=0.231  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~-~V~vlE~~~   55 (416)
                      ..|.|||+|..|...|..|+++|+ +|.++|.+.
T Consensus         5 ~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~   38 (317)
T 2ewd_A            5 RKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE   38 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence            479999999999999999999999 999999875

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=93.27  E-value=0.065  Score=54.56  Aligned_cols=31  Identities=16%  Similarity=0.156  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (416)
                      .|+|||+|..|+-+|..|++.|.+|+++|++
T Consensus       288 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  318 (598)
T 2x8g_A          288 KTLVIGASYVALECAGFLASLGGDVTVMVRS  318 (598)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            6999999999999999999999999999987

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=93.25  E-value=0.092  Score=48.69  Aligned_cols=35  Identities=20%  Similarity=0.142  Sum_probs=31.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      ...|.|||+|.-|...|..|+++|++|.+++++..
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~   64 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAE   64 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGG
T ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            35799999999999999999999999999998643

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=93.24  E-value=0.059  Score=53.91  Aligned_cols=36  Identities=19%  Similarity=0.107  Sum_probs=33.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (416)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++.+++.
T Consensus       356 k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~  391 (521)
T 1hyu_A          356 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK  391 (521)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccC
Confidence            479999999999999999999999999999998875

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=93.22  E-value=0.045  Score=49.72  Aligned_cols=36  Identities=14%  Similarity=0.155  Sum_probs=32.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      ....|+|||+|-.|+..|..|.++|.+|+|++.+..
T Consensus        12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~~   47 (274)
T 1kyq_A           12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDLH   47 (274)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEEC
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            456899999999999999999999999999998653

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=93.20  E-value=0.052  Score=53.38  Aligned_cols=34  Identities=15%  Similarity=0.365  Sum_probs=31.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      .+.|||+|+|--|...|..|+..|++|+|+|++.
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~   36 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDG   36 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCH
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            3579999999999999999999999999999874

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=93.14  E-value=0.081  Score=52.28  Aligned_cols=34  Identities=29%  Similarity=0.390  Sum_probs=31.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ...|.|||+|.-|...|..|+++|++|+++|++.
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~   38 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISA   38 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            3479999999999999999999999999999875

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=93.14  E-value=0.17  Score=51.16  Aligned_cols=40  Identities=25%  Similarity=0.419  Sum_probs=36.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (416)
                      .++||||||||++|+++|+.|+++|++|+|||+++..+|.
T Consensus        31 ~~~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~~~~~Gt   70 (571)
T 2rgh_A           31 EELDLLIIGGGITGAGVAVQAAASGIKTGLIEMQDFAEGT   70 (571)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTCSG
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCc
Confidence            4689999999999999999999999999999999866653

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=93.12  E-value=0.079  Score=51.41  Aligned_cols=33  Identities=18%  Similarity=0.196  Sum_probs=30.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      ..|.|||+|.-|+..|..|++ |++|+++|.+..
T Consensus        37 mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~   69 (432)
T 3pid_A           37 MKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQA   69 (432)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHH
T ss_pred             CEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHH
Confidence            589999999999999999998 999999998743

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=93.12  E-value=0.089  Score=48.99  Aligned_cols=34  Identities=18%  Similarity=0.259  Sum_probs=31.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ...|.|||+|.-|...|..|+++|++|++++++.
T Consensus        31 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   64 (320)
T 4dll_A           31 ARKITFLGTGSMGLPMARRLCEAGYALQVWNRTP   64 (320)
T ss_dssp             CSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCH
Confidence            3579999999999999999999999999999874

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=93.12  E-value=0.11  Score=48.25  Aligned_cols=33  Identities=21%  Similarity=0.439  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC--eEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~--~V~vlE~~~   55 (416)
                      ..|.|||+|.-|.+.|..|+++|+  +|.+++++.
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~   68 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   68 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCH
Confidence            479999999999999999999999  999999875

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=93.08  E-value=0.049  Score=47.78  Aligned_cols=35  Identities=17%  Similarity=0.240  Sum_probs=31.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEE-EccCC
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLH-LDPNP   55 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~v-lE~~~   55 (416)
                      ....|.|||+|.-|...|..|+++|++|++ ++++.
T Consensus        22 ~mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~   57 (220)
T 4huj_A           22 SMTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGP   57 (220)
T ss_dssp             GSCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCG
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCH
Confidence            346899999999999999999999999999 77764

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=93.03  E-value=0.18  Score=49.34  Aligned_cols=51  Identities=18%  Similarity=0.163  Sum_probs=42.2

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeC---CCc--EEEcCEEE
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SGQ--DILSHKLV  331 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~---~G~--~i~Ad~VI  331 (416)
                      ..+.+.|.+.+...|++|++++.|++|..+  ++++++|++.   +|+  +++||.||
T Consensus       100 ~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~--~~~v~gv~~~~~~~G~~~~~~ad~VV  155 (453)
T 3atr_A          100 PLYNQRVLKEAQDRGVEIWDLTTAMKPIFE--DGYVKGAVLFNRRTNEELTVYSKVVV  155 (453)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEEE--TTEEEEEEEEETTTTEEEEEECSEEE
T ss_pred             HHHHHHHHHHHHHcCCEEEeCcEEEEEEEE--CCEEEEEEEEEcCCCceEEEEcCEEE
Confidence            357788888888899999999999999987  6776667654   676  79999999

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=93.02  E-value=0.23  Score=50.36  Aligned_cols=53  Identities=19%  Similarity=0.274  Sum_probs=43.7

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCC------C---------cEEEcCEEEE
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS------G---------QDILSHKLVL  332 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~------G---------~~i~Ad~VI~  332 (416)
                      ..+.+.|.+.+++.|++|+++++|++|..+ +++++++|++.+      |         .+++||.||.
T Consensus       144 ~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~-~~g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~  211 (584)
T 2gmh_A          144 GHLVSWMGEQAEALGVEVYPGYAAAEILFH-EDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIF  211 (584)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCEEEEEEC-TTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEE
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEEc-CCCCEEEEEeCCccccCCCCcccccCCceEEECCEEEE
Confidence            477888888888899999999999999986 257777888753      3         6899999994

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=93.01  E-value=0.1  Score=48.65  Aligned_cols=33  Identities=15%  Similarity=0.319  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~-~V~vlE~~~   55 (416)
                      ..|.|||+|..|...|..|+..|+ +|.++|.+.
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~   38 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   38 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence            589999999999999999999999 999999874

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=93.00  E-value=0.086  Score=48.43  Aligned_cols=37  Identities=16%  Similarity=0.090  Sum_probs=34.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      ..|+|||+|..|+-+|..|++.|.+|+++++++++..
T Consensus       155 ~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~  191 (323)
T 3f8d_A          155 RVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKA  191 (323)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCCS
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCc
Confidence            4799999999999999999999999999999988765

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=92.93  E-value=0.068  Score=50.77  Aligned_cols=32  Identities=19%  Similarity=0.238  Sum_probs=30.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      .|.|||+|.-|...|..|+++|++|.+++++.
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~   48 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   48 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            79999999999999999999999999998863

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=92.90  E-value=0.092  Score=47.99  Aligned_cols=33  Identities=24%  Similarity=0.288  Sum_probs=30.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      .|.|||+|.-|...|..|+++|++|++++++..
T Consensus         3 ~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pef_A            3 KFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPE   35 (287)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            689999999999999999999999999998754

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=92.87  E-value=0.1  Score=45.58  Aligned_cols=33  Identities=21%  Similarity=0.236  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ..+.|||+|..|...|..|+++|++|.+++++.
T Consensus        29 ~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~   61 (215)
T 2vns_A           29 PKVGILGSGDFARSLATRLVGSGFKVVVGSRNP   61 (215)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            479999999999999999999999999998763

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=92.86  E-value=0.11  Score=48.65  Aligned_cols=34  Identities=24%  Similarity=0.237  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHH-HHHHHhhCCCeEEEEccCCC
Q 014883           23 FDLIVIGTGLPESV-ISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        23 ~DViIIGaGl~GL~-aA~~La~~G~~V~vlE~~~~   56 (416)
                      ..|.|||.|-+|++ +|..|.+.|++|.+.|+++.
T Consensus         5 ~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~   39 (326)
T 3eag_A            5 KHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY   39 (326)
T ss_dssp             CEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             cEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            47999999999996 78899999999999999865

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=92.85  E-value=0.094  Score=48.78  Aligned_cols=33  Identities=15%  Similarity=0.413  Sum_probs=29.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ...|.|||+|--|.+.|..|+++|++|+++ ++.
T Consensus        19 ~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~   51 (318)
T 3hwr_A           19 GMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARP   51 (318)
T ss_dssp             -CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCH
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcH
Confidence            357999999999999999999999999999 654

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=92.85  E-value=0.089  Score=51.99  Aligned_cols=36  Identities=11%  Similarity=0.146  Sum_probs=31.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      |++.+|.|||+|.-|...|..|+++|++|.+++++.
T Consensus        13 ~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~   48 (480)
T 2zyd_A           13 MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSR   48 (480)
T ss_dssp             --CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred             cCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            566799999999999999999999999999998863

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=92.84  E-value=0.16  Score=48.82  Aligned_cols=53  Identities=15%  Similarity=0.171  Sum_probs=42.9

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCc--EEEcCEEEE
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ--DILSHKLVL  332 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~--~i~Ad~VI~  332 (416)
                      ..+.+.|.+.+++.|++|+.+++|++|..+. ++..+.|++.+|+  +++||.||.
T Consensus       106 ~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~-~~~~v~v~~~~g~~~~~~a~~vV~  160 (421)
T 3nix_A          106 GNFDKTLADEAARQGVDVEYEVGVTDIKFFG-TDSVTTIEDINGNKREIEARFIID  160 (421)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEEET-TEEEEEEEETTSCEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC-CEEEEEEEcCCCCEEEEEcCEEEE
Confidence            4677888888888899999999999999872 4444567777888  699999993

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=92.82  E-value=0.096  Score=51.41  Aligned_cols=36  Identities=22%  Similarity=0.129  Sum_probs=32.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC-eEEEEccCCCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFY   57 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~-~V~vlE~~~~~   57 (416)
                      ..+|+|||+|..|+-+|..|.+.|. +|++++++++.
T Consensus       264 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~  300 (456)
T 2vdc_G          264 GKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRK  300 (456)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCST
T ss_pred             CCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCcc
Confidence            3589999999999999999999997 59999998875

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=92.80  E-value=0.23  Score=48.72  Aligned_cols=37  Identities=14%  Similarity=0.048  Sum_probs=31.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCCC
Q 014883           22 AFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYG   58 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~G   58 (416)
                      ++||||||||++||+||..|++.  |++|+|+|+++.++
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~   41 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRIS   41 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC----
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCccc
Confidence            46999999999999999999999  99999999999976

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=92.76  E-value=0.11  Score=47.16  Aligned_cols=34  Identities=18%  Similarity=0.220  Sum_probs=31.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      ..|+|.|||.-|...+..|.++|++|.++.++..
T Consensus         4 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   37 (286)
T 3gpi_A            4 SKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQ   37 (286)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTS
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            4799999999999999999999999999988753

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=92.74  E-value=0.23  Score=49.13  Aligned_cols=43  Identities=28%  Similarity=0.333  Sum_probs=39.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhh-CCCeEEEEc--------cCCCCCCcccc
Q 014883           21 TAFDLIVIGTGLPESVISAAASA-SGKSVLHLD--------PNPFYGSHFSS   63 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~-~G~~V~vlE--------~~~~~GG~~~s   63 (416)
                      .+|||||||||.+|++||..|++ .|++|+|+|        +++.+||.|..
T Consensus         2 ~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~c~~   53 (490)
T 1fec_A            2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVN   53 (490)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHHH
T ss_pred             ccccEEEECCCHHHHHHHHHHHHHcCCEEEEEecccccccccCCCcCccccC
Confidence            36899999999999999999999 999999999        47789998754

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=92.71  E-value=0.1  Score=48.82  Aligned_cols=32  Identities=19%  Similarity=0.342  Sum_probs=30.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (416)
                      ..+.|||+|--|.+.|..|+++|++|.+++++
T Consensus        15 ~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~   46 (335)
T 1z82_A           15 MRFFVLGAGSWGTVFAQMLHENGEEVILWARR   46 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            57999999999999999999999999999886

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=92.71  E-value=0.12  Score=48.04  Aligned_cols=35  Identities=17%  Similarity=0.177  Sum_probs=32.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCC-eEEEEccC
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGK-SVLHLDPN   54 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~-~V~vlE~~   54 (416)
                      |....|.|||+|..|...|..|+++|+ +|.++|.+
T Consensus         6 ~~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~   41 (315)
T 3tl2_A            6 IKRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIP   41 (315)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence            445689999999999999999999999 99999997

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=92.70  E-value=0.069  Score=49.10  Aligned_cols=33  Identities=15%  Similarity=0.210  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ..|.|||+|--|.+.|..|+++|++|++++++.
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~   35 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA   35 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence            479999999999999999999999999999873

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=92.70  E-value=0.1  Score=47.83  Aligned_cols=35  Identities=9%  Similarity=0.060  Sum_probs=33.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (416)
                      ..|+|||+|..|+-+|..|++.|.+|+++++++++
T Consensus       148 ~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~  182 (315)
T 3r9u_A          148 KEVAVLGGGDTALEEALYLANICSKIYLIHRRDEF  182 (315)
T ss_dssp             SEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCC
Confidence            47999999999999999999999999999999887

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=92.68  E-value=0.11  Score=48.30  Aligned_cols=33  Identities=30%  Similarity=0.348  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC--eEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~--~V~vlE~~~   55 (416)
                      ..|.|||+|-.|...|..|+++|+  +|.++|++.
T Consensus         8 mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            8 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            479999999999999999999999  999999874

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=92.67  E-value=0.25  Score=48.95  Aligned_cols=45  Identities=31%  Similarity=0.336  Sum_probs=40.0

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhh-CCCeEEEEc--------cCCCCCCcccc
Q 014883           19 EPTAFDLIVIGTGLPESVISAAASA-SGKSVLHLD--------PNPFYGSHFSS   63 (416)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~-~G~~V~vlE--------~~~~~GG~~~s   63 (416)
                      |..+|||||||||.+|++||..|++ .|++|+|+|        +++.+||.|..
T Consensus         4 M~~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~~~~   57 (495)
T 2wpf_A            4 MSKAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCVN   57 (495)
T ss_dssp             CCEEEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBCBTTHHHHH
T ss_pred             cccccCEEEECCChhHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCeeec
Confidence            3447999999999999999999999 999999999        46789998764

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=92.65  E-value=0.15  Score=48.67  Aligned_cols=52  Identities=13%  Similarity=0.118  Sum_probs=42.5

Q ss_pred             chHHHHHHHHHHhc-CcEEEcCCceeEEEEecCCCcEE-EEEeCCCcEEEcCEEEE
Q 014883          279 GELPQAFCRRAAVK-GCLYVLRMPVISLLTDQNSGSYK-GVRLASGQDILSHKLVL  332 (416)
Q Consensus       279 ~~l~~al~r~~~~~-Gg~i~l~~~V~~I~~~~~~g~~~-gV~l~~G~~i~Ad~VI~  332 (416)
                      ..+.+.|.+.+++. |++|+++++|++|..+  ++.++ .|++.+|++++||.||.
T Consensus       107 ~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~--~~~v~g~v~~~~g~~~~ad~vV~  160 (399)
T 2x3n_A          107 ESLRRLVLEKIDGEATVEMLFETRIEAVQRD--ERHAIDQVRLNDGRVLRPRVVVG  160 (399)
T ss_dssp             HHHHHHHHHHHTTCTTEEEECSCCEEEEEEC--TTSCEEEEEETTSCEEEEEEEEE
T ss_pred             HHHHHHHHHHhhhcCCcEEEcCCEEEEEEEc--CCceEEEEEECCCCEEECCEEEE
Confidence            46778888888777 8999999999999886  44432 68888898999999993

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=92.60  E-value=0.083  Score=50.25  Aligned_cols=33  Identities=24%  Similarity=0.317  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ..|+|||+|..|+.+|..|...|.+|+++|++.
T Consensus       185 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~  217 (381)
T 3p2y_A          185 ASALVLGVGVAGLQALATAKRLGAKTTGYDVRP  217 (381)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHHTCEEEEECSSG
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            479999999999999999999999999999874

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=92.57  E-value=0.13  Score=47.58  Aligned_cols=34  Identities=29%  Similarity=0.490  Sum_probs=31.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ...|.|||.|.-|...|..|+++|++|++++++.
T Consensus         9 ~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~   42 (306)
T 3l6d_A            9 EFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSP   42 (306)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3579999999999999999999999999999875

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=92.56  E-value=0.052  Score=48.01  Aligned_cols=32  Identities=13%  Similarity=0.175  Sum_probs=30.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (416)
                      ..|.|||+|.-|.+.|..|+++|++|..+++.
T Consensus         7 mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~   38 (232)
T 3dfu_A            7 LRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP   38 (232)
T ss_dssp             CEEEEECCSCCCSCHHHHHHHTTCEEEECSSG
T ss_pred             cEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH
Confidence            47999999999999999999999999999985

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=92.55  E-value=0.094  Score=51.64  Aligned_cols=33  Identities=18%  Similarity=0.169  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhC--CCeEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~--G~~V~vlE~~~   55 (416)
                      ..|.|||+|..|+..|..|+++  |++|++++++.
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~   40 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNE   40 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            4799999999999999999999  89999999863

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=92.51  E-value=0.11  Score=50.29  Aligned_cols=34  Identities=24%  Similarity=0.337  Sum_probs=31.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      ..|||||.|-.|...|..|.+.|++|+|+|.+..
T Consensus         5 ~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~   38 (413)
T 3l9w_A            5 MRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPD   38 (413)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            4799999999999999999999999999999853

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=92.48  E-value=0.27  Score=48.46  Aligned_cols=42  Identities=31%  Similarity=0.296  Sum_probs=39.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      .+|||||||||++||+||..|++.|++|+|+|+ +.+||.|..
T Consensus        25 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~~   66 (484)
T 3o0h_A           25 FDFDLFVIGSGSGGVRAARLAGALGKRVAIAEE-YRIGGTCVI   66 (484)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHHHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCcCEEEEEeC-CCCCCceec
Confidence            369999999999999999999999999999999 789998764

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=92.46  E-value=0.12  Score=47.79  Aligned_cols=37  Identities=11%  Similarity=0.090  Sum_probs=34.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      ..|+|||+|..|+-+|..|++.|.+|+++++++++.+
T Consensus       155 ~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~  191 (332)
T 3lzw_A          155 RRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRA  191 (332)
T ss_dssp             CEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCSS
T ss_pred             CEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCCc
Confidence            4799999999999999999999999999999988743

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=92.34  E-value=0.13  Score=50.83  Aligned_cols=33  Identities=9%  Similarity=0.015  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      -.++|||+|..|+-.|..|++.|.+|+++++..
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~  218 (488)
T 3dgz_A          186 GKTLVVGASYVALECAGFLTGIGLDTTVMMRSI  218 (488)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCceEEEEcCc
Confidence            369999999999999999999999999999864

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=92.32  E-value=0.069  Score=43.24  Aligned_cols=33  Identities=21%  Similarity=0.204  Sum_probs=30.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ..|.|||+|..|...|..|++.|.+|.+++++.
T Consensus        22 ~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~   54 (144)
T 3oj0_A           22 NKILLVGNGMLASEIAPYFSYPQYKVTVAGRNI   54 (144)
T ss_dssp             CEEEEECCSHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            479999999999999999999999999999863

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=92.29  E-value=0.093  Score=47.96  Aligned_cols=33  Identities=21%  Similarity=0.265  Sum_probs=30.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      .|.|||+|.-|...|..|+++|++|++++++..
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPA   35 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHTCCEEEECSSGG
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            689999999999999999999999999998754

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=92.29  E-value=0.35  Score=47.85  Aligned_cols=39  Identities=23%  Similarity=0.394  Sum_probs=35.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCCC
Q 014883           20 PTAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYG   58 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~G   58 (416)
                      +..+||||||||++|++||..|+++  |.+|+|+|++++++
T Consensus         9 ~~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~   49 (493)
T 1m6i_A            9 PSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELP   49 (493)
T ss_dssp             CSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCC
T ss_pred             CCcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence            5579999999999999999999887  99999999998775

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=92.24  E-value=0.14  Score=47.81  Aligned_cols=33  Identities=21%  Similarity=0.199  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~-~V~vlE~~~   55 (416)
                      ..|.|||||..|...|..|+++|+ +|.++|.+.
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~   48 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIE   48 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSST
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCH
Confidence            489999999999999999999999 999999875

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=92.23  E-value=0.12  Score=50.21  Aligned_cols=34  Identities=29%  Similarity=0.264  Sum_probs=31.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      -..-|||.|.-|+..|..|+++|++|+++|.+..
T Consensus        12 ~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~   45 (431)
T 3ojo_A           12 SKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQ   45 (431)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            3678999999999999999999999999998754

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=92.23  E-value=0.13  Score=44.43  Aligned_cols=32  Identities=13%  Similarity=0.184  Sum_probs=29.5

Q ss_pred             cEEEEC-CChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           24 DLIVIG-TGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        24 DViIIG-aGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      .|.||| +|..|...|..|+++|++|.+++++.
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~   34 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            589999 99999999999999999999998763

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=92.22  E-value=0.14  Score=51.17  Aligned_cols=32  Identities=13%  Similarity=0.074  Sum_probs=30.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (416)
                      -.++|||+|..|+-.|..|++.|.+|+++++.
T Consensus       211 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~  242 (519)
T 3qfa_A          211 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS  242 (519)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEecc
Confidence            36999999999999999999999999999985

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=92.16  E-value=0.14  Score=50.51  Aligned_cols=34  Identities=15%  Similarity=0.169  Sum_probs=31.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      +.+|.|||.|.-|...|..|+++|++|.+++++.
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~   37 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   37 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4589999999999999999999999999999875

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=92.16  E-value=0.13  Score=47.16  Aligned_cols=34  Identities=18%  Similarity=0.203  Sum_probs=30.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ...|.|||+|.-|...|..|+++|++|.+++++.
T Consensus         4 ~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   37 (301)
T 3cky_A            4 SIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLME   37 (301)
T ss_dssp             CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            3579999999999999999999999999998864

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=92.07  E-value=0.1  Score=48.64  Aligned_cols=30  Identities=20%  Similarity=0.265  Sum_probs=28.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEcc
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDP   53 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~   53 (416)
                      .|.|||+|..|...|..|+++|++|+++++
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence            589999999999999999999999999998

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=92.07  E-value=0.31  Score=48.30  Aligned_cols=39  Identities=38%  Similarity=0.497  Sum_probs=34.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      +++||||||||++|+++|+.|+++|++|+|+|+++..+|
T Consensus         2 ~~~DVvIIGgGi~G~~~A~~La~~G~~V~llE~~~~~~g   40 (501)
T 2qcu_A            2 ETKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQDLACA   40 (501)
T ss_dssp             -CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTCS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCEEEEECCCCCCC
Confidence            468999999999999999999999999999999875443

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=92.06  E-value=0.13  Score=46.53  Aligned_cols=33  Identities=9%  Similarity=-0.088  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      ..|+|||+|.+|+-+|..|++.| +|+++++.+.
T Consensus       142 ~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~  174 (297)
T 3fbs_A          142 GKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIV  174 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTC
T ss_pred             CEEEEEecCccHHHHHHHhhhcC-cEEEEECCCC
Confidence            47999999999999999999999 9999998876

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=92.06  E-value=0.12  Score=49.87  Aligned_cols=31  Identities=23%  Similarity=0.264  Sum_probs=29.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      .|.|||+|..|+..|..|++ |++|++++++.
T Consensus         2 kI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~   32 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL-QNEVTIVDILP   32 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHhC-CCEEEEEECCH
Confidence            58999999999999999999 99999999864

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=92.04  E-value=0.12  Score=50.77  Aligned_cols=35  Identities=11%  Similarity=0.035  Sum_probs=31.5

Q ss_pred             ccEEEECCChhHHHHHHHHh--------------------hCCC-eEEEEccCCCC
Q 014883           23 FDLIVIGTGLPESVISAAAS--------------------ASGK-SVLHLDPNPFY   57 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La--------------------~~G~-~V~vlE~~~~~   57 (416)
                      -.|+|||+|..|+-+|..|+                    +.|. +|+|+++++..
T Consensus       146 ~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~  201 (460)
T 1cjc_A          146 DTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPL  201 (460)
T ss_dssp             SEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGG
T ss_pred             CEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChH
Confidence            57999999999999999999                    6787 79999998765

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=92.01  E-value=0.35  Score=40.35  Aligned_cols=50  Identities=20%  Similarity=0.074  Sum_probs=40.5

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (416)
                      .++.+.+.+.++..|.+++++ +|++|..+  ++. +.|++.+| ++.||.||..
T Consensus        56 ~~~~~~l~~~~~~~gv~v~~~-~v~~i~~~--~~~-~~v~~~~g-~i~ad~vI~A  105 (180)
T 2ywl_A           56 EELLRRLEAHARRYGAEVRPG-VVKGVRDM--GGV-FEVETEEG-VEKAERLLLC  105 (180)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEC-CCCEEEEC--SSS-EEEECSSC-EEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHcCCEEEeC-EEEEEEEc--CCE-EEEEECCC-EEEECEEEEC
Confidence            467777888888899999999 99999875  333 57887777 8999999954

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=92.00  E-value=0.37  Score=47.65  Aligned_cols=42  Identities=17%  Similarity=0.167  Sum_probs=38.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhC---CCeEEEEccCCCCCCccccc
Q 014883           22 AFDLIVIGTGLPESVISAAASAS---GKSVLHLDPNPFYGSHFSSL   64 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~---G~~V~vlE~~~~~GG~~~s~   64 (416)
                      +|||||||||++|++||..|++.   |++|+|+|+++ +||.|..+
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~~~~~   46 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAVLD   46 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHHHT
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCcccCc
Confidence            48999999999999999999999   99999999998 99977643

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=91.96  E-value=0.22  Score=50.59  Aligned_cols=52  Identities=13%  Similarity=0.104  Sum_probs=43.1

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeC-CC--cEEEcCEEEE
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SG--QDILSHKLVL  332 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~-~G--~~i~Ad~VI~  332 (416)
                      ..+.+.|.+.++..|++++.+++|++|..+  ++..++|++. +|  ++++||.||.
T Consensus       128 ~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~--~g~~~~V~~~~~G~~~~i~AdlVV~  182 (591)
T 3i3l_A          128 EEFDKLLLDEARSRGITVHEETPVTDVDLS--DPDRVVLTVRRGGESVTVESDFVID  182 (591)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCEEEEECC--STTCEEEEEEETTEEEEEEESEEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEc--CCCEEEEEEecCCceEEEEcCEEEE
Confidence            467788888888899999999999999876  5556788876 66  5799999993

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=91.93  E-value=0.28  Score=47.99  Aligned_cols=53  Identities=13%  Similarity=0.242  Sum_probs=43.2

Q ss_pred             cchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEE-eCCCcEEEcCEEEEC
Q 014883          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVR-LASGQDILSHKLVLD  333 (416)
Q Consensus       278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~-l~~G~~i~Ad~VI~~  333 (416)
                      ..++.+.+.+.+++.|.+|+++++|++|..+  ++..+.|+ +.+|+ +.||.||+.
T Consensus       210 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~--~~~~~~v~~~~~g~-i~aD~Vv~a  263 (463)
T 4dna_A          210 DQDMRRGLHAAMEEKGIRILCEDIIQSVSAD--ADGRRVATTMKHGE-IVADQVMLA  263 (463)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSCCEEEEEEC--TTSCEEEEESSSCE-EEESEEEEC
T ss_pred             CHHHHHHHHHHHHHCCCEEECCCEEEEEEEc--CCCEEEEEEcCCCe-EEeCEEEEe
Confidence            3467888888889999999999999999875  33335788 88887 999999953

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=91.93  E-value=0.15  Score=47.10  Aligned_cols=32  Identities=25%  Similarity=0.359  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--eEEEEccCC
Q 014883           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~--~V~vlE~~~   55 (416)
                      .|.|||+|..|...|..|+.+|+  +|.++|.+.
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~   35 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE   35 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            68999999999999999999999  999999874

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=91.89  E-value=0.15  Score=47.15  Aligned_cols=32  Identities=16%  Similarity=0.082  Sum_probs=29.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ..|.|||+|--|.+.|..|+ +|++|+++.++.
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~   34 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ   34 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCH
Confidence            47999999999999999999 999999999875

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=91.76  E-value=0.2  Score=52.10  Aligned_cols=33  Identities=30%  Similarity=0.287  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ..|.|||+|.-|...|..|+++|++|+++|.+.
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~  345 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNE  345 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCH
Confidence            369999999999999999999999999999875

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=91.73  E-value=0.41  Score=45.95  Aligned_cols=60  Identities=15%  Similarity=0.123  Sum_probs=46.0

Q ss_pred             EEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecC--CCcEEEEEeCCCcEEEcCEEEE
Q 014883          271 LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQN--SGSYKGVRLASGQDILSHKLVL  332 (416)
Q Consensus       271 ~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~--~g~~~gV~l~~G~~i~Ad~VI~  332 (416)
                      ..+|..-...+.+.|.+.++..|++|+++++|++|..+++  ++. +.|++.+| +++||+||+
T Consensus       101 ~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~-~~v~~~~g-~i~ad~VVl  162 (401)
T 2gqf_A          101 QLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVR-FVLQVNST-QWQCKNLIV  162 (401)
T ss_dssp             EEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCC-EEEEETTE-EEEESEEEE
T ss_pred             EEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCe-EEEEECCC-EEECCEEEE
Confidence            3466555678889999999999999999999999986410  133 57877666 899999994

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=91.73  E-value=0.18  Score=47.40  Aligned_cols=33  Identities=18%  Similarity=0.254  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ..|.|||.|.-|.+.|..|+++|++|.+++++.
T Consensus         9 ~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~   41 (341)
T 3ktd_A            9 RPVCILGLGLIGGSLLRDLHAANHSVFGYNRSR   41 (341)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            469999999999999999999999999999875

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=91.73  E-value=0.15  Score=50.37  Aligned_cols=33  Identities=18%  Similarity=0.228  Sum_probs=30.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhC--CCeEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~--G~~V~vlE~~~   55 (416)
                      ..|.|||+|..|+..|..|+++  |++|++++++.
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~   44 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNT   44 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            4799999999999999999999  79999999753

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=91.72  E-value=0.17  Score=47.92  Aligned_cols=34  Identities=21%  Similarity=0.277  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      ..|+|||+|..|..+|..+.+.|++|+++|.+..
T Consensus         2 K~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~   35 (363)
T 4ffl_A            2 KTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQ   35 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            3689999999999999999999999999998753

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=91.68  E-value=0.098  Score=50.33  Aligned_cols=59  Identities=15%  Similarity=0.085  Sum_probs=41.0

Q ss_pred             EEeecCCc---chHHHHHHHHHHhcCcEEEcCCcee---------EEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVI---------SLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (416)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~---------~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (416)
                      .+.+..|.   ..+.++|.+.+++.|++|+.+++|+         +|..+  ++++ +|++.+| +++||.||..
T Consensus       161 ~~~~~~g~v~~~~l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~--~~~v-~v~~~~g-~i~a~~VV~A  231 (405)
T 3c4n_A          161 RVDPRALTYRPGSLALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVT--NTHQ-IVVHETR-QIRAGVIIVA  231 (405)
T ss_dssp             EEETTCEEECHHHHHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC----------CBCCE-EEEEEEEEEC
T ss_pred             EEcCCCEEEcHHHHHHHHHHHHHHCCCEEEcCCEEEeccccccccceEee--CCeE-EEEECCc-EEECCEEEEC
Confidence            33444443   5688999999999999999999999         88765  4554 7776555 8999999943

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=91.66  E-value=0.33  Score=48.58  Aligned_cols=38  Identities=5%  Similarity=0.161  Sum_probs=34.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhh---CCCeEEEEccCCCC
Q 014883           20 PTAFDLIVIGTGLPESVISAAASA---SGKSVLHLDPNPFY   57 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~---~G~~V~vlE~~~~~   57 (416)
                      +..+||||||||++||++|+.|++   .|++|+|||+.+..
T Consensus         3 ~~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~~   43 (538)
T 2aqj_A            3 KPIKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAAIP   43 (538)
T ss_dssp             CBCCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSSSC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCCCC
Confidence            346899999999999999999999   99999999997643

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=91.57  E-value=0.1  Score=49.15  Aligned_cols=35  Identities=14%  Similarity=0.080  Sum_probs=32.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCC-------CeEEEEccCCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASG-------KSVLHLDPNPF   56 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G-------~~V~vlE~~~~   56 (416)
                      ...|.|||+|.-|.+.|..|+++|       ++|.+++++..
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~   49 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEED   49 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCB
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChh
Confidence            357999999999999999999999       99999998765

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=91.53  E-value=0.15  Score=51.11  Aligned_cols=36  Identities=14%  Similarity=0.008  Sum_probs=32.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (416)
                      -.++|||||..|+=.|..+++-|.+|+|+++...+-
T Consensus       224 ~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~L~  259 (542)
T 4b1b_A          224 GKTLVVGASYVALECSGFLNSLGYDVTVAVRSIVLR  259 (542)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCSST
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCeEEEeccccccc
Confidence            479999999999999999999999999999865543

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=91.50  E-value=0.35  Score=48.07  Aligned_cols=51  Identities=24%  Similarity=0.257  Sum_probs=41.8

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEe--CCCc--EEEcCEEE
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL--ASGQ--DILSHKLV  331 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l--~~G~--~i~Ad~VI  331 (416)
                      ..+.+.|.+.+++.|++|+++++|++|..+  ++++++|++  .+|+  +++||.||
T Consensus       111 ~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~--~~~v~gv~~~~~dG~~~~i~ad~VI  165 (512)
T 3e1t_A          111 ARFDDMLLRNSERKGVDVRERHEVIDVLFE--GERAVGVRYRNTEGVELMAHARFIV  165 (512)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCEEEEEEEE--TTEEEEEEEECSSSCEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEE--CCEEEEEEEEeCCCCEEEEEcCEEE
Confidence            467788888888899999999999999987  677666654  3574  79999999

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=91.45  E-value=0.16  Score=48.85  Aligned_cols=33  Identities=30%  Similarity=0.457  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ..|+|||+|-.|+.+|..|...|.+|+++|++.
T Consensus       173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~  205 (401)
T 1x13_A          173 AKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRP  205 (401)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCG
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            479999999999999999999999999999874

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=91.41  E-value=0.2  Score=49.43  Aligned_cols=33  Identities=12%  Similarity=0.024  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      -.++|||+|..|+-.|..|++.|.+|+++++..
T Consensus       188 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~  220 (483)
T 3dgh_A          188 GKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSI  220 (483)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCC
Confidence            479999999999999999999999999999853

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=91.39  E-value=0.17  Score=45.42  Aligned_cols=35  Identities=14%  Similarity=0.251  Sum_probs=31.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCC----CeEEEEccCCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASG----KSVLHLDPNPF   56 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G----~~V~vlE~~~~   56 (416)
                      ...|.|||+|.-|...|..|+++|    ++|.+++++..
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~   42 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKK   42 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCcc
Confidence            357999999999999999999999    79999998765

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=91.37  E-value=0.45  Score=47.44  Aligned_cols=37  Identities=11%  Similarity=0.229  Sum_probs=33.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhh------------CCCeEEEEccCCCC
Q 014883           21 TAFDLIVIGTGLPESVISAAASA------------SGKSVLHLDPNPFY   57 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~------------~G~~V~vlE~~~~~   57 (416)
                      ..+||||||||++||+||+.|++            +|++|+|+|+.+..
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~~~   54 (526)
T 2pyx_A            6 PITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPDVA   54 (526)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSSCC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCCCC
Confidence            35899999999999999999999            99999999997643

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=91.35  E-value=0.13  Score=47.50  Aligned_cols=31  Identities=19%  Similarity=0.204  Sum_probs=29.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhC-----C-CeEEEEcc
Q 014883           23 FDLIVIGTGLPESVISAAASAS-----G-KSVLHLDP   53 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~-----G-~~V~vlE~   53 (416)
                      ..|.|||+|.-|...|..|+++     | ++|+++++
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence            4799999999999999999999     9 99999986

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=91.32  E-value=0.19  Score=49.49  Aligned_cols=34  Identities=12%  Similarity=0.180  Sum_probs=31.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ..+|.|||+|.-|...|..|+++|++|.+++++.
T Consensus         5 ~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~   38 (474)
T 2iz1_A            5 QANFGVVGMAVMGKNLALNVESRGYTVAIYNRTT   38 (474)
T ss_dssp             TBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            4689999999999999999999999999998863

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=91.29  E-value=0.17  Score=47.11  Aligned_cols=33  Identities=15%  Similarity=0.161  Sum_probs=31.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCC-CeEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASG-KSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G-~~V~vlE~~~   55 (416)
                      ..|.|||+|.-|...|..|+++| ++|++++++.
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~   58 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF   58 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred             CeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            47999999999999999999999 9999999985

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=91.22  E-value=0.2  Score=46.37  Aligned_cols=32  Identities=19%  Similarity=0.276  Sum_probs=29.6

Q ss_pred             cEEEECCChhHHHHHHHHhhC--CCeEEEEccCC
Q 014883           24 DLIVIGTGLPESVISAAASAS--GKSVLHLDPNP   55 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~--G~~V~vlE~~~   55 (416)
                      .|.|||+|..|...|..|+++  |++|.++|.+.
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~   35 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            689999999999999999996  89999999975

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=91.18  E-value=0.25  Score=44.70  Aligned_cols=32  Identities=13%  Similarity=0.149  Sum_probs=29.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (416)
                      ..|+|+|+|-.|..+|..|++.|.+|+|+.++
T Consensus       120 k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~  151 (271)
T 1nyt_A          120 LRILLIGAGGASRGVLLPLLSLDCAVTITNRT  151 (271)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCEEEEEECC
Confidence            47999999999999999999999999999876

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=91.12  E-value=0.46  Score=48.87  Aligned_cols=42  Identities=31%  Similarity=0.318  Sum_probs=37.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (416)
                      +.++||||||||++||+||+.|+++|++|+||||....||.+
T Consensus         3 ~~~~DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~~~~~g~s   44 (660)
T 2bs2_A            3 VQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHS   44 (660)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGGGSGG
T ss_pred             cccccEEEECchHHHHHHHHHHHHCCCcEEEEeccCCCCCcc
Confidence            346899999999999999999999999999999998765544

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=91.07  E-value=0.21  Score=47.82  Aligned_cols=34  Identities=24%  Similarity=0.302  Sum_probs=31.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ...|+|||+|-.|+.+|..|...|.+|+++|++.
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~  205 (384)
T 1l7d_A          172 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA  205 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3479999999999999999999999999999875

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=91.06  E-value=0.43  Score=48.38  Aligned_cols=42  Identities=29%  Similarity=0.244  Sum_probs=37.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (416)
                      +.++||||||||++||+||+.|+++|.+|+||||....||..
T Consensus         5 ~~~~DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~~~~g~s   46 (588)
T 2wdq_A            5 VREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHT   46 (588)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSGG
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc
Confidence            346899999999999999999999999999999998776643

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=91.05  E-value=0.23  Score=46.26  Aligned_cols=36  Identities=17%  Similarity=0.234  Sum_probs=32.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCC-eEEEEccCC
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~-~V~vlE~~~   55 (416)
                      |....|.|||+|..|.+.|..|+..|+ +|.++|.+.
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~   41 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAE   41 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence            334689999999999999999999999 999999876

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=91.00  E-value=0.22  Score=45.10  Aligned_cols=32  Identities=16%  Similarity=0.316  Sum_probs=29.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      .|.|||+|.-|...|..|+++|++|.+++++.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   33 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58999999999999999999999999998864

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=90.93  E-value=0.45  Score=48.41  Aligned_cols=52  Identities=12%  Similarity=0.185  Sum_probs=43.3

Q ss_pred             chHHHHHHHHHHh-cCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883          279 GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (416)
Q Consensus       279 ~~l~~al~r~~~~-~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (416)
                      ..+.+.|.+.++. .|.+| +++.|+.|..+  ++++++|++.+|+++.||.||+.
T Consensus       123 ~~~~~~L~~~Le~~~GVeI-~~~~Vt~L~~e--~g~V~GV~t~dG~~i~AdaVVLA  175 (637)
T 2zxi_A          123 KRYREYMKKVCENQENLYI-KQEEVVDIIVK--NNQVVGVRTNLGVEYKTKAVVVT  175 (637)
T ss_dssp             HHHHHHHHHHHHTCTTEEE-EESCEEEEEES--SSBEEEEEETTSCEEECSEEEEC
T ss_pred             HHHHHHHHHHHHhCCCCEE-EEeEEEEEEec--CCEEEEEEECCCcEEEeCEEEEc
Confidence            4677888887777 58888 68899999886  77888999999999999999943

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=90.87  E-value=0.2  Score=45.26  Aligned_cols=33  Identities=27%  Similarity=0.426  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ..|+|.|||.-|...+..|.++|++|.++.++.
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~   38 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSRNP   38 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTCEEEEEESCG
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCEEEEEEcCh
Confidence            479999999999999999999999999998864

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=90.84  E-value=0.21  Score=46.54  Aligned_cols=37  Identities=24%  Similarity=0.339  Sum_probs=31.3

Q ss_pred             CcccEEEECC-ChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883           21 TAFDLIVIGT-GLPESVISAAASASGKSVLHLDPNPFY   57 (416)
Q Consensus        21 ~~~DViIIGa-Gl~GL~aA~~La~~G~~V~vlE~~~~~   57 (416)
                      ....|+|.|| |.-|...+..|.++|++|.++.++..-
T Consensus        18 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~   55 (347)
T 4id9_A           18 GSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG   55 (347)
T ss_dssp             ---CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC
Confidence            3457999998 999999999999999999999987643

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=90.84  E-value=0.18  Score=48.56  Aligned_cols=30  Identities=27%  Similarity=0.319  Sum_probs=28.0

Q ss_pred             ccEEEECCChhHHHHHHHHhh-CCCeEEEEc
Q 014883           23 FDLIVIGTGLPESVISAAASA-SGKSVLHLD   52 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~-~G~~V~vlE   52 (416)
                      ..|.|||+|.-|.+.|..|++ +|++|++++
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~   33 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLT   33 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEEC
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEe
Confidence            379999999999999999998 599999998

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=90.78  E-value=0.12  Score=55.75  Aligned_cols=37  Identities=16%  Similarity=0.116  Sum_probs=34.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      ..|+|||+|..|+-+|..|++.|.+|+|+|+++++..
T Consensus       285 k~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~~  321 (965)
T 2gag_A          285 ARIAVATTNDSAYELVRELAATGGVVAVIDARSSISA  321 (965)
T ss_dssp             SSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCCH
T ss_pred             CeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccch
Confidence            4799999999999999999999999999999998754

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=90.74  E-value=0.28  Score=45.48  Aligned_cols=41  Identities=15%  Similarity=0.140  Sum_probs=33.4

Q ss_pred             CCCCCCCcccEEEECC-ChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           15 YPPIEPTAFDLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        15 ~~~~~~~~~DViIIGa-Gl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      .++-......|+|.|| |.-|...+..|+++|++|.++.++.
T Consensus        13 ~~~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~   54 (330)
T 2pzm_A           13 GLVPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFA   54 (330)
T ss_dssp             -CCSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCS
T ss_pred             CCcccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            4444444457999997 9999999999999999999998854

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=90.73  E-value=0.2  Score=44.93  Aligned_cols=32  Identities=9%  Similarity=0.240  Sum_probs=29.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCC-CeEEEEccCC
Q 014883           24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNP   55 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G-~~V~vlE~~~   55 (416)
                      .|.|||+|.-|...|..|+++| ++|.+++++.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~   34 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECCCH
Confidence            5899999999999999999999 9999999863

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=90.67  E-value=0.12  Score=45.69  Aligned_cols=32  Identities=6%  Similarity=-0.030  Sum_probs=29.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ..++|||+|-.|...|..|.+.|+ |+++|++.
T Consensus        10 ~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~   41 (234)
T 2aef_A           10 RHVVICGWSESTLECLRELRGSEV-FVLAEDEN   41 (234)
T ss_dssp             CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGG
T ss_pred             CEEEEECCChHHHHHHHHHHhCCe-EEEEECCH
Confidence            479999999999999999999999 99999864

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=90.66  E-value=0.23  Score=47.25  Aligned_cols=35  Identities=23%  Similarity=0.247  Sum_probs=32.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC-eEEEEccCC
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~-~V~vlE~~~   55 (416)
                      .+..|||+|||-+|..+|..|...|. +|.++|++.
T Consensus       187 ~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G  222 (398)
T 2a9f_A          187 DEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG  222 (398)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             CccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            45689999999999999999999998 999999984

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=90.66  E-value=0.23  Score=47.08  Aligned_cols=33  Identities=21%  Similarity=0.285  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ..|+|+|+|-.|+.++..|...|.+|++++++.
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~  200 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV  200 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            479999999999999999999999999999874

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=90.64  E-value=0.2  Score=45.25  Aligned_cols=51  Identities=14%  Similarity=-0.063  Sum_probs=27.9

Q ss_pred             CCCCcCCCCCCCCCC-----CCcccEEEECC-ChhHHHHHHHHhhCCCeEEEEccCC
Q 014883            5 ESESELPVPPYPPIE-----PTAFDLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus         5 ~~~~~~~~~~~~~~~-----~~~~DViIIGa-Gl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      .++++.+.++.++-.     ....-|+|.|| |--|...|..|+++|++|+++.+++
T Consensus         6 ~~~~~~~~~~~~~~~m~~~~l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~   62 (269)
T 4dmm_A            6 HHHHHSSGLVPRGSHMTALPLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASS   62 (269)
T ss_dssp             ------------------CTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCCCcCCCccccccccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            445555555533332     23334677775 6678999999999999999988753

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=90.64  E-value=0.23  Score=45.37  Aligned_cols=32  Identities=19%  Similarity=0.209  Sum_probs=29.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      .|.|||+|.-|...|..|+++|++|.+++++.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~   33 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFP   33 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCCEEEECSST
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            58999999999999999999999999999864

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=90.62  E-value=0.23  Score=47.20  Aligned_cols=33  Identities=24%  Similarity=0.314  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ..|+|+|+|-.|+.+|..|+..|.+|++++++.
T Consensus       167 ~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~  199 (369)
T 2eez_A          167 ASVVILGGGTVGTNAAKIALGMGAQVTILDVNH  199 (369)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            479999999999999999999999999999864

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=90.54  E-value=0.46  Score=43.31  Aligned_cols=46  Identities=13%  Similarity=0.041  Sum_probs=34.4

Q ss_pred             CCCCCCCCCCCCcccEEEECC-ChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           10 LPVPPYPPIEPTAFDLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        10 ~~~~~~~~~~~~~~DViIIGa-Gl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ++.|..++..+...-|+|.|| |.-|...|..|+++|++|+++.++.
T Consensus        14 ~~~~~~~~~~l~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~   60 (302)
T 1w6u_A           14 LQKAMLPPNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   60 (302)
T ss_dssp             CCSCCSCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccCCCCCcccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            344444444444456888875 6889999999999999999998764

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=90.53  E-value=0.25  Score=47.10  Aligned_cols=40  Identities=23%  Similarity=0.254  Sum_probs=35.4

Q ss_pred             cccEEEECC-ChhHHHHHHHHhhCCC---eEEEEccCC-CCCCcc
Q 014883           22 AFDLIVIGT-GLPESVISAAASASGK---SVLHLDPNP-FYGSHF   61 (416)
Q Consensus        22 ~~DViIIGa-Gl~GL~aA~~La~~G~---~V~vlE~~~-~~GG~~   61 (416)
                      ...|+|||+ |..|+.|+..+..-|.   +|.++|.+. .-||+.
T Consensus       214 ~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~~g~~~  258 (394)
T 2qrj_A          214 KPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSRGGPF  258 (394)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHTTCSCC
T ss_pred             CCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccccccCCch
Confidence            468999999 9999999999999998   999999986 557763

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=90.50  E-value=0.44  Score=48.58  Aligned_cols=42  Identities=21%  Similarity=0.160  Sum_probs=37.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (416)
                      +.++||||||||++||+||+.|+++|++|+||||....||.+
T Consensus        16 ~~~~DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~~~~g~s   57 (621)
T 2h88_A           16 DHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHT   57 (621)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSGG
T ss_pred             cccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCc
Confidence            346899999999999999999999999999999987766643

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=90.49  E-value=0.31  Score=44.33  Aligned_cols=33  Identities=15%  Similarity=0.279  Sum_probs=30.5

Q ss_pred             ccEEEECC-ChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           23 FDLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGa-Gl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ..|.|||+ |.-|...|..|+++|++|.+++++.
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~   45 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAP   45 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            37999999 9999999999999999999999764

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=90.48  E-value=0.34  Score=46.23  Aligned_cols=35  Identities=26%  Similarity=0.364  Sum_probs=31.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ....|.|||+|-.|...|..+.+.|++|.+++.+.
T Consensus        13 ~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~   47 (389)
T 3q2o_A           13 PGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTK   47 (389)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCC
Confidence            34589999999999999999999999999998764

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=90.45  E-value=0.2  Score=52.30  Aligned_cols=36  Identities=8%  Similarity=0.153  Sum_probs=33.0

Q ss_pred             ccEEEEC--CChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           23 FDLIVIG--TGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        23 ~DViIIG--aGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      ..|+|||  +|..|+-+|..|++.|.+|+++++.+ +..
T Consensus       529 k~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~-l~~  566 (729)
T 1o94_A          529 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH-LAN  566 (729)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC-TTH
T ss_pred             CeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc-ccc
Confidence            3799998  99999999999999999999999998 654

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=90.44  E-value=0.24  Score=49.06  Aligned_cols=33  Identities=18%  Similarity=0.185  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ..|.|||+|.-|...|..|+++|++|.+++++.
T Consensus        11 ~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~   43 (497)
T 2p4q_A           11 ADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQ   43 (497)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            589999999999999999999999999999864

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=90.43  E-value=0.29  Score=41.59  Aligned_cols=33  Identities=21%  Similarity=0.225  Sum_probs=30.2

Q ss_pred             ccEEEECC-ChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           23 FDLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGa-Gl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ..|+|+|| |.-|...+..|.++|++|.++.++.
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~   37 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS   37 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeCh
Confidence            46999998 9999999999999999999998864

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=90.42  E-value=0.27  Score=44.72  Aligned_cols=34  Identities=18%  Similarity=0.169  Sum_probs=31.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC---eEEEEccCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGK---SVLHLDPNP   55 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~---~V~vlE~~~   55 (416)
                      ...|.|||+|.-|.+.|..|+++|+   +|.+++++.
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~   39 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSL   39 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSS
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCH
Confidence            3579999999999999999999999   999999875

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=90.42  E-value=0.3  Score=45.44  Aligned_cols=35  Identities=14%  Similarity=0.172  Sum_probs=31.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC-eEEEEccCC
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~-~V~vlE~~~   55 (416)
                      ....|.|||+|..|.+.|..|+..|. +|.++|.+.
T Consensus         4 ~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~   39 (321)
T 3p7m_A            4 ARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQ   39 (321)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCh
Confidence            34589999999999999999999998 999999875

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=90.36  E-value=0.25  Score=45.18  Aligned_cols=33  Identities=27%  Similarity=0.366  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ..|.|||+|..|...|..|+++|++|.+++++.
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   38 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   38 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            379999999999999999999999999998864

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=90.32  E-value=0.26  Score=48.67  Aligned_cols=33  Identities=15%  Similarity=0.176  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      .+|.|||+|.-|...|..|+++|++|.+++++.
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~   35 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            479999999999999999999999999999863

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=90.30  E-value=0.29  Score=42.13  Aligned_cols=32  Identities=28%  Similarity=0.344  Sum_probs=29.3

Q ss_pred             cEEEECC-ChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           24 DLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        24 DViIIGa-Gl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      .|+|+|| |.-|...+..|.++|++|.++.++.
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNA   34 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCc
Confidence            4899995 9999999999999999999998874

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=90.25  E-value=0.22  Score=43.26  Aligned_cols=33  Identities=24%  Similarity=0.367  Sum_probs=30.2

Q ss_pred             ccEEEECC-ChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           23 FDLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGa-Gl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ..|+|.|| |.-|...+..|.++|++|.++.++.
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~   38 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHP   38 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCG
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCc
Confidence            47999995 9999999999999999999999874

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=90.23  E-value=0.22  Score=46.26  Aligned_cols=32  Identities=19%  Similarity=0.234  Sum_probs=29.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--eEEEEccCC
Q 014883           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~--~V~vlE~~~   55 (416)
                      .|.|||+|..|.+.|..|+++|+  +|.++|.+.
T Consensus         2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~   35 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence            58999999999999999999999  999999863

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=90.20  E-value=0.24  Score=48.61  Aligned_cols=34  Identities=12%  Similarity=0.075  Sum_probs=31.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (416)
                      ....|+|||+|-.|...+..|.++|.+|+|++.+
T Consensus        11 ~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~   44 (457)
T 1pjq_A           11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (457)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCC
Confidence            3467999999999999999999999999999985

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=90.12  E-value=0.3  Score=45.17  Aligned_cols=33  Identities=21%  Similarity=0.236  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~-~V~vlE~~~   55 (416)
                      ..|.|||||..|...|..|+..|+ +|.++|.+.
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~   36 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence            479999999999999999999997 999999864

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=90.12  E-value=0.27  Score=46.67  Aligned_cols=34  Identities=21%  Similarity=0.237  Sum_probs=31.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC-eEEEEccC
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGK-SVLHLDPN   54 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~-~V~vlE~~   54 (416)
                      .+..|+|+|||-+|..+|..|...|. +|.++|++
T Consensus       191 ~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          191 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            45689999999999999999999998 89999997

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=90.06  E-value=0.23  Score=53.94  Aligned_cols=33  Identities=24%  Similarity=0.299  Sum_probs=31.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC-eEEEEccCCC
Q 014883           24 DLIVIGTGLPESVISAAASASGK-SVLHLDPNPF   56 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~-~V~vlE~~~~   56 (416)
                      +|+|||+|..|+-+|..|++.|. +|++++++++
T Consensus       334 ~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~~  367 (1025)
T 1gte_A          334 AVIVLGAGDTAFDCATSALRCGARRVFLVFRKGF  367 (1025)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCG
T ss_pred             cEEEECCChHHHHHHHHHHHcCCCEEEEEEecCh
Confidence            89999999999999999999996 9999999874

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=90.03  E-value=0.53  Score=46.64  Aligned_cols=53  Identities=19%  Similarity=0.099  Sum_probs=41.7

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCc---EEEcCEEE-ECC
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ---DILSHKLV-LDP  334 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~---~i~Ad~VI-~~p  334 (416)
                      ..+-+.|.+.+++.|++|+++++|++|+++  ++. +.|++.++.   +++||.|| ++.
T Consensus       106 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~--~~~-v~v~~~~~~g~~~~~a~~vVgADG  162 (500)
T 2qa1_A          106 SVTETHLEQWATGLGADIRRGHEVLSLTDD--GAG-VTVEVRGPEGKHTLRAAYLVGCDG  162 (500)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETCEEEEEEEE--TTE-EEEEEEETTEEEEEEESEEEECCC
T ss_pred             HHHHHHHHHHHHHCCCEEECCcEEEEEEEc--CCe-EEEEEEcCCCCEEEEeCEEEECCC
Confidence            366777878888889999999999999987  444 457666664   79999999 553

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=90.02  E-value=0.52  Score=46.67  Aligned_cols=53  Identities=13%  Similarity=0.102  Sum_probs=41.6

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCc---EEEcCEEE-ECC
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ---DILSHKLV-LDP  334 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~---~i~Ad~VI-~~p  334 (416)
                      ..+-+.|.+.+++.|++|+++++|++|.++  ++. +.|++.++.   +++||.|| ++.
T Consensus       107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~--~~~-v~v~~~~~~g~~~~~a~~vVgADG  163 (499)
T 2qa2_A          107 STTESVLEEWALGRGAELLRGHTVRALTDE--GDH-VVVEVEGPDGPRSLTTRYVVGCDG  163 (499)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCEEEEEEEC--SSC-EEEEEECSSCEEEEEEEEEEECCC
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEe--CCE-EEEEEEcCCCcEEEEeCEEEEccC
Confidence            467777888888889999999999999987  333 457766765   79999999 553

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=89.95  E-value=0.28  Score=48.43  Aligned_cols=32  Identities=19%  Similarity=0.262  Sum_probs=30.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      +|.|||+|.-|...|..|+++|++|.+++++.
T Consensus         3 kIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~   34 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTY   34 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             EEEEEChHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            79999999999999999999999999999863

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=89.90  E-value=0.32  Score=42.09  Aligned_cols=31  Identities=32%  Similarity=0.464  Sum_probs=28.9

Q ss_pred             cEEEECC-ChhHHHHHHHHhhCCCeEEEEccC
Q 014883           24 DLIVIGT-GLPESVISAAASASGKSVLHLDPN   54 (416)
Q Consensus        24 DViIIGa-Gl~GL~aA~~La~~G~~V~vlE~~   54 (416)
                      .|+|.|| |.-|...+..|.++|++|.++.++
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~   33 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRD   33 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEec
Confidence            4899998 999999999999999999999876

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=89.89  E-value=0.32  Score=45.21  Aligned_cols=34  Identities=12%  Similarity=0.189  Sum_probs=30.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC--eEEEEccCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~--~V~vlE~~~   55 (416)
                      ...|.|||+|..|++.|..|+..|.  +|.++|.+.
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~   42 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   42 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            3689999999999999999999998  999999874

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=89.88  E-value=0.39  Score=49.94  Aligned_cols=35  Identities=23%  Similarity=0.290  Sum_probs=31.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      -..|.|||||..|.-.|..++++|++|+++|.++.
T Consensus       316 i~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~  350 (742)
T 3zwc_A          316 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPK  350 (742)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred             ccEEEEEcccHHHHHHHHHHHhCCCchhcccchHh
Confidence            35899999999999999999999999999998753

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=89.84  E-value=0.3  Score=45.47  Aligned_cols=33  Identities=24%  Similarity=0.324  Sum_probs=30.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC--eEEEEccC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGK--SVLHLDPN   54 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~--~V~vlE~~   54 (416)
                      ...|.|||+|..|.+.|..|+..|+  +|.++|.+
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~   39 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVN   39 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecc
Confidence            3579999999999999999999998  89999985

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=89.84  E-value=0.21  Score=47.46  Aligned_cols=34  Identities=21%  Similarity=0.305  Sum_probs=31.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCC-------CeEEEEccCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASG-------KSVLHLDPNPF   56 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G-------~~V~vlE~~~~   56 (416)
                      ..|.|||+|.-|.+.|..|+++|       ++|.+++++..
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh
Confidence            36999999999999999999999       99999998765

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=89.83  E-value=0.35  Score=46.00  Aligned_cols=54  Identities=15%  Similarity=0.144  Sum_probs=41.2

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEe-CCCc--EEEcCEEE-ECC
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL-ASGQ--DILSHKLV-LDP  334 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l-~~G~--~i~Ad~VI-~~p  334 (416)
                      ..+.+.|.+.+...|++|++++.|++|..++ ++. +.|++ .+|+  +++||.|| ++.
T Consensus       103 ~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~-~~~-~~v~~~~~g~~~~~~a~~vV~AdG  160 (394)
T 1k0i_A          103 TEVTRDLMEAREACGATTVYQAAEVRLHDLQ-GER-PYVTFERDGERLRLDCDYIAGCDG  160 (394)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCEEEEEECTT-SSS-CEEEEEETTEEEEEECSEEEECCC
T ss_pred             HHHHHHHHHHHHhcCCeEEeceeEEEEEEec-CCc-eEEEEecCCcEEEEEeCEEEECCC
Confidence            4677788887878899999999999998751 222 45666 6887  79999999 443

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=89.75  E-value=0.32  Score=44.09  Aligned_cols=32  Identities=22%  Similarity=0.480  Sum_probs=29.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--eEEEEccCC
Q 014883           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~--~V~vlE~~~   55 (416)
                      .|.|||+|.-|...|..|+++|+  +|.+++++.
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   36 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            58999999999999999999999  999999864

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=89.71  E-value=0.31  Score=43.59  Aligned_cols=33  Identities=15%  Similarity=0.200  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ..|.|||+|.-|...|..|+++|++|.+++++.
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~   36 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSL   36 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCH
Confidence            479999999999999999999999999999864

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=89.70  E-value=0.62  Score=42.25  Aligned_cols=52  Identities=8%  Similarity=0.052  Sum_probs=40.2

Q ss_pred             chHHHHHHHHHHh-cCcEEEcCCceeEEEEecCCCcEEEEEeC---------CC-----cEEEcCEEEE
Q 014883          279 GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVRLA---------SG-----QDILSHKLVL  332 (416)
Q Consensus       279 ~~l~~al~r~~~~-~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~---------~G-----~~i~Ad~VI~  332 (416)
                      ..+.+.|.+.+.+ .|.++++++.|++|..+  ++++.+|++.         +|     .+++||.||.
T Consensus       119 ~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~--~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~  185 (284)
T 1rp0_A          119 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVK--GNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVS  185 (284)
T ss_dssp             HHHHHHHHHHHHTSTTEEEEETEEEEEEEEE--TTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhcCCCEEEcCcEEEEEEec--CCeEEEEEEeccccccccCccccCceEEEECCEEEE
Confidence            4666777776665 69999999999999987  6777677653         32     5799999994

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=89.70  E-value=0.28  Score=43.84  Aligned_cols=34  Identities=18%  Similarity=0.244  Sum_probs=30.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC-eEEEEccCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~-~V~vlE~~~   55 (416)
                      ...|+|||+|-.|..+|..|+++|. +++++|...
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            3579999999999999999999997 899999863

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=89.66  E-value=0.38  Score=43.86  Aligned_cols=35  Identities=23%  Similarity=0.344  Sum_probs=31.2

Q ss_pred             cEEEECC-ChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 014883           24 DLIVIGT-GLPESVISAAASASGKSVLHLDPNPFYG   58 (416)
Q Consensus        24 DViIIGa-Gl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (416)
                      .|+|.|| |+-|...+..|.++|++|.++-+++..+
T Consensus         2 kILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~~   37 (298)
T 4b4o_A            2 RVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPG   37 (298)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTT
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcC
Confidence            5899998 9999999999999999999998876543

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=89.63  E-value=0.22  Score=51.70  Aligned_cols=33  Identities=24%  Similarity=0.351  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ..|.|||+|.-|...|..|+++|++|+++|.+.
T Consensus       315 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~  347 (715)
T 1wdk_A          315 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINE  347 (715)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEECCChhhHHHHHHHHhCCCEEEEEECCH
Confidence            369999999999999999999999999999875

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=89.60  E-value=0.53  Score=48.05  Aligned_cols=51  Identities=16%  Similarity=0.135  Sum_probs=42.5

Q ss_pred             chHHHHHHHHHHh-cCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 014883          279 GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (416)
Q Consensus       279 ~~l~~al~r~~~~-~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~  332 (416)
                      ..+.+.|.+.++. .|.+| +++.|+.|..+  ++++++|++.+|.+++||.||+
T Consensus       124 ~~~~~~L~e~Le~~~GV~I-~~~~V~~L~~e--~g~V~GV~t~dG~~I~Ad~VVL  175 (651)
T 3ces_A          124 VLYRQAVRTALENQPNLMI-FQQAVEDLIVE--NDRVVGAVTQMGLKFRAKAVVL  175 (651)
T ss_dssp             HHHHHHHHHHHHTCTTEEE-EECCEEEEEES--SSBEEEEEETTSEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhCCCCEE-EEEEEEEEEec--CCEEEEEEECCCCEEECCEEEE
Confidence            3577888887777 68888 68899999886  7788899988898999999994

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=89.53  E-value=0.32  Score=46.37  Aligned_cols=33  Identities=33%  Similarity=0.395  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ..|+|||+|-.|+.+|..|...|.+|++++++.
T Consensus       169 ~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~  201 (377)
T 2vhw_A          169 ADVVVIGAGTAGYNAARIANGMGATVTVLDINI  201 (377)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            479999999999999999999999999999864

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=89.48  E-value=0.39  Score=44.48  Aligned_cols=43  Identities=19%  Similarity=0.158  Sum_probs=34.3

Q ss_pred             CcccEEEECCC-hhHHHHHHHHhhCCCeEEEEccC--------CCCCCcccc
Q 014883           21 TAFDLIVIGTG-LPESVISAAASASGKSVLHLDPN--------PFYGSHFSS   63 (416)
Q Consensus        21 ~~~DViIIGaG-l~GL~aA~~La~~G~~V~vlE~~--------~~~GG~~~s   63 (416)
                      ....|+|||+| +.|..+|..|...|.+|+|++++        ..+++..++
T Consensus       176 ~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~  227 (320)
T 1edz_A          176 YGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHH  227 (320)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCE
T ss_pred             CCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhccc
Confidence            34689999999 67999999999999999988554        566665444

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=89.47  E-value=0.27  Score=50.95  Aligned_cols=39  Identities=15%  Similarity=0.121  Sum_probs=35.4

Q ss_pred             ccEEEEC--CChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883           23 FDLIVIG--TGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (416)
Q Consensus        23 ~DViIIG--aGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (416)
                      .+|+|||  +|..|+-+|..|++.|.+|+++++.+++....
T Consensus       524 ~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~  564 (690)
T 3k30_A          524 KKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWT  564 (690)
T ss_dssp             SEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGG
T ss_pred             CEEEEEcCCCCccHHHHHHHHHhCCCeeEEEeccccccccc
Confidence            3599999  99999999999999999999999999887654

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=89.45  E-value=0.28  Score=45.29  Aligned_cols=32  Identities=22%  Similarity=0.378  Sum_probs=29.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCC--CeEEEEccCC
Q 014883           24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNP   55 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G--~~V~vlE~~~   55 (416)
                      .|.|||+|..|...|..|+++|  .+|.++|++.
T Consensus         3 kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~   36 (309)
T 1hyh_A            3 KIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (309)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCH
Confidence            6999999999999999999999  7999999864

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=89.44  E-value=0.33  Score=48.67  Aligned_cols=34  Identities=21%  Similarity=0.289  Sum_probs=31.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      ..|+|||+|.+|+-.|..|++.|.+|+++++.+.
T Consensus       187 k~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~  220 (542)
T 1w4x_A          187 QRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPH  220 (542)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             CEEEEECCCccHHHHHHHHhhcCceEEEEEcCCc
Confidence            4799999999999999999999999999998654

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=89.32  E-value=0.31  Score=44.13  Aligned_cols=33  Identities=6%  Similarity=0.139  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ..|+|+|+|-.|..+|..|++.|.+|+|+.++.
T Consensus       120 ~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~  152 (272)
T 1p77_A          120 QHVLILGAGGATKGVLLPLLQAQQNIVLANRTF  152 (272)
T ss_dssp             CEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            479999999999999999999999999998763

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=89.25  E-value=0.4  Score=43.31  Aligned_cols=34  Identities=15%  Similarity=0.282  Sum_probs=30.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ...|+|||+|-+|.++|..|++.|.+|.|+.|+.
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~  151 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSS  151 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3579999999999999999999999999998764

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=89.23  E-value=0.28  Score=45.08  Aligned_cols=33  Identities=12%  Similarity=0.183  Sum_probs=27.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      .|-+||-|.-|...|..|.++|++|++++++..
T Consensus         7 kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~   39 (297)
T 4gbj_A            7 KIAFLGLGNLGTPIAEILLEAGYELVVWNRTAS   39 (297)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEC-----
T ss_pred             cEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            699999999999999999999999999998654

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=89.18  E-value=0.32  Score=44.12  Aligned_cols=31  Identities=13%  Similarity=0.082  Sum_probs=28.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      .|.|||+|.-|...|..|++ |++|.+++++.
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~   33 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTF   33 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT-TSCEEEECSST
T ss_pred             eEEEEcccHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            58999999999999999999 99999999864

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=89.15  E-value=0.45  Score=43.72  Aligned_cols=32  Identities=16%  Similarity=0.129  Sum_probs=29.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEEccC
Q 014883           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPN   54 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~-~V~vlE~~   54 (416)
                      ..|+|||+|-.|..+|..|++.|. +|+|+.++
T Consensus       142 ~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~  174 (297)
T 2egg_A          142 KRILVIGAGGGARGIYFSLLSTAAERIDMANRT  174 (297)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECSS
T ss_pred             CEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            479999999999999999999997 99999876

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=89.10  E-value=0.27  Score=44.80  Aligned_cols=32  Identities=19%  Similarity=0.211  Sum_probs=29.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ..|.|||+|..|...|..|+++|++|.+++ +.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~   35 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IG   35 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SS
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CH
Confidence            369999999999999999999999999998 54

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=89.03  E-value=0.57  Score=42.80  Aligned_cols=34  Identities=21%  Similarity=0.102  Sum_probs=29.1

Q ss_pred             cccEEEECCC---hhHHHHHHHHhhCCCeEEEEccCC
Q 014883           22 AFDLIVIGTG---LPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        22 ~~DViIIGaG---l~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ..-|+|.||+   --|...|..|+++|++|+++.++.
T Consensus        30 ~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~   66 (296)
T 3k31_A           30 GKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSE   66 (296)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCCh
Confidence            3468899985   678999999999999999998874

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=88.98  E-value=0.33  Score=43.59  Aligned_cols=33  Identities=18%  Similarity=0.218  Sum_probs=30.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCe-EEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKS-VLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~-V~vlE~~~   55 (416)
                      ..|.|||+|..|...|..|+++|++ |.+++++.
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~   44 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTE   44 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSH
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCH
Confidence            4799999999999999999999999 89998764

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=88.89  E-value=0.39  Score=44.97  Aligned_cols=33  Identities=18%  Similarity=0.091  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ..|.|||+|.-|.+.|..|+++|++|++.+++.
T Consensus        17 ~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~   49 (338)
T 1np3_A           17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSG   49 (338)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             CEEEEECchHHHHHHHHHHHHCcCEEEEEECCh
Confidence            369999999999999999999999999999875

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=88.79  E-value=0.34  Score=47.46  Aligned_cols=39  Identities=18%  Similarity=0.213  Sum_probs=33.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhC--------------------C-CeEEEEccCCCCCCcc
Q 014883           23 FDLIVIGTGLPESVISAAASAS--------------------G-KSVLHLDPNPFYGSHF   61 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~--------------------G-~~V~vlE~~~~~GG~~   61 (416)
                      -.|+|||+|..|+-+|..|++.                    | .+|+++++++.+-...
T Consensus       148 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~~~~f  207 (456)
T 1lqt_A          148 ARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAF  207 (456)
T ss_dssp             SEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChhhhcc
Confidence            4799999999999999999974                    6 5999999998765443

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=88.70  E-value=0.4  Score=42.94  Aligned_cols=36  Identities=11%  Similarity=0.038  Sum_probs=30.0

Q ss_pred             CCcccEEEECC---ChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           20 PTAFDLIVIGT---GLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        20 ~~~~DViIIGa---Gl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ....-|+|.||   |--|...|..|+++|++|+++.+++
T Consensus        12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~   50 (271)
T 3ek2_A           12 LDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGD   50 (271)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecch
Confidence            34457899996   4678999999999999999998763

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=88.60  E-value=0.37  Score=43.16  Aligned_cols=30  Identities=17%  Similarity=0.169  Sum_probs=27.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEcc
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDP   53 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~   53 (416)
                      .|.|||+|.-|...|..|+++|++|.++++
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~~V~~~~~   31 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLE   31 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCT
T ss_pred             eEEEEechHHHHHHHHHHHHCCCeEEEeCC
Confidence            588999999999999999999999999765

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=88.60  E-value=0.46  Score=42.19  Aligned_cols=33  Identities=12%  Similarity=0.206  Sum_probs=28.7

Q ss_pred             cEEEECC-ChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           24 DLIVIGT-GLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        24 DViIIGa-Gl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      -|+|.|| |--|...|..|+++|++|+++.++..
T Consensus        24 ~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~   57 (251)
T 3orf_A           24 NILVLGGSGALGAEVVKFFKSKSWNTISIDFREN   57 (251)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            5888886 67899999999999999999998754

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=88.56  E-value=0.44  Score=42.27  Aligned_cols=33  Identities=15%  Similarity=0.118  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC----eEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGK----SVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~----~V~vlE~~~   55 (416)
                      ..|.|||+|.-|...|..|+++|+    +|.+++++.
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~   39 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNT   39 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCH
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCH
Confidence            369999999999999999999998    999999874

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=88.52  E-value=0.35  Score=44.00  Aligned_cols=33  Identities=9%  Similarity=0.181  Sum_probs=29.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhC--CCeEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~--G~~V~vlE~~~   55 (416)
                      ..|.|||+|.-|...|..|+++  |++|.+++++.
T Consensus         7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   41 (290)
T 3b1f_A            7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSD   41 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSH
T ss_pred             ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCH
Confidence            4799999999999999999998  68999998763

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=88.41  E-value=0.39  Score=46.90  Aligned_cols=32  Identities=16%  Similarity=0.191  Sum_probs=29.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (416)
                      ..|+|+|+|..|...|..|++.|++|.+++++
T Consensus         4 k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~   35 (450)
T 1ff9_A            4 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRT   35 (450)
T ss_dssp             CEEEEECCSTTHHHHHHHHHTTTCEEEEEESS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCcCEEEEEECC
Confidence            46999999999999999999999999999875

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=88.31  E-value=0.92  Score=41.96  Aligned_cols=50  Identities=8%  Similarity=-0.033  Sum_probs=40.4

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEE-EEeCCCcEEEcCEEEE
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKG-VRLASGQDILSHKLVL  332 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~g-V~l~~G~~i~Ad~VI~  332 (416)
                      ..+.+.+.+.++..|.++++++.|++|..+  ++. +. |++.+| ++.+|+||+
T Consensus        76 ~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~--~~~-~~~v~~~~g-~~~~d~vV~  126 (357)
T 4a9w_A           76 AEVLAYLAQYEQKYALPVLRPIRVQRVSHF--GER-LRVVARDGR-QWLARAVIS  126 (357)
T ss_dssp             HHHHHHHHHHHHHTTCCEECSCCEEEEEEE--TTE-EEEEETTSC-EEEEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEEC--CCc-EEEEEeCCC-EEEeCEEEE
Confidence            466677777788899999999999999886  454 45 887666 899999994

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=88.22  E-value=0.5  Score=46.86  Aligned_cols=55  Identities=18%  Similarity=0.190  Sum_probs=40.2

Q ss_pred             cchHHHHHHHHHHhcC-cEEEcCCceeEEEEecCCC-cEEEEEeC--CC-----cEEEcCEEEEC
Q 014883          278 QGELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSG-SYKGVRLA--SG-----QDILSHKLVLD  333 (416)
Q Consensus       278 ~~~l~~al~r~~~~~G-g~i~l~~~V~~I~~~~~~g-~~~gV~l~--~G-----~~i~Ad~VI~~  333 (416)
                      -...+.++.+.+...| .+|++++.|++|+.++ ++ ++++|++.  +|     .+++|+.||++
T Consensus       220 r~s~~~~~l~~a~~~~n~~i~~~~~V~~i~~~~-~g~~~~gV~~~~~~g~~~~~~~v~A~~VIla  283 (504)
T 1n4w_A          220 KQSLDKTYLAAALGTGKVTIQTLHQVKTIRQTK-DGGYALTVEQKDTDGKLLATKEISCRYLFLG  283 (504)
T ss_dssp             BCCTTTTHHHHHHHTTSEEEEESEEEEEEEECT-TSSEEEEEEEECTTCCEEEEEEEEEEEEEEC
T ss_pred             ccCHHHHHHHHHHhcCCcEEEeCCEEEEEEECC-CCCEEEEEEEeCCCCccceeEEEeeCEEEEc
Confidence            4444555556566665 8999999999999872 34 78899874  56     36899998854

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=88.18  E-value=0.75  Score=46.71  Aligned_cols=52  Identities=15%  Similarity=0.201  Sum_probs=42.8

Q ss_pred             chHHHHHHHHHHhcC-cEEEcCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 014883          279 GELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (416)
Q Consensus       279 ~~l~~al~r~~~~~G-g~i~l~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~Ad~VI~  332 (416)
                      ..|.++|.+.+...| .+|+.++.|++|..+  ++++++|..   .+|+  +++|+.||+
T Consensus       134 ~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~~--~g~v~Gv~~~~~~~G~~~~i~A~~VVl  191 (602)
T 1kf6_A          134 FHMLHTLFQTSLQFPQIQRFDEHFVLDILVD--DGHVRGLVAMNMMEGTLVQIRANAVVM  191 (602)
T ss_dssp             HHHHHHHHHHHTTCTTEEEEETEEEEEEEEE--TTEEEEEEEEETTTTEEEEEECSCEEE
T ss_pred             HHHHHHHHHHHHhCCCcEEEeCCEEEEEEEe--CCEEEEEEEEEcCCCcEEEEEcCeEEE
Confidence            368888888888888 999999999999987  777777753   4676  689999994

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=88.18  E-value=0.39  Score=43.49  Aligned_cols=33  Identities=18%  Similarity=0.293  Sum_probs=30.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (416)
                      ...|+|||+|-.|.+.|..|++.|.+|.+++++
T Consensus       129 ~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~  161 (275)
T 2hk9_A          129 EKSILVLGAGGASRAVIYALVKEGAKVFLWNRT  161 (275)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHHTCEEEEECSS
T ss_pred             CCEEEEECchHHHHHHHHHHHHcCCEEEEEECC
Confidence            347999999999999999999999999999886

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=88.16  E-value=0.65  Score=42.42  Aligned_cols=35  Identities=9%  Similarity=0.084  Sum_probs=30.8

Q ss_pred             CCcccEEEECCC-hhHHHHHHHHhhCCCeEEEEccC
Q 014883           20 PTAFDLIVIGTG-LPESVISAAASASGKSVLHLDPN   54 (416)
Q Consensus        20 ~~~~DViIIGaG-l~GL~aA~~La~~G~~V~vlE~~   54 (416)
                      ....+|+|||+| +.|.-+|..|.+.|.+|+++.++
T Consensus       163 l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~  198 (301)
T 1a4i_A          163 IAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK  198 (301)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECC
Confidence            345689999999 68999999999999999999754

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=88.06  E-value=0.47  Score=43.54  Aligned_cols=34  Identities=21%  Similarity=0.195  Sum_probs=31.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ...|.|||+|-.|..+|..|...|.+|++++++.
T Consensus       157 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~  190 (300)
T 2rir_A          157 GSQVAVLGLGRTGMTIARTFAALGANVKVGARSS  190 (300)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4579999999999999999999999999999864

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=87.94  E-value=0.59  Score=45.81  Aligned_cols=34  Identities=24%  Similarity=0.234  Sum_probs=31.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ...|+|+|+|-.|..+|..|+..|.+|++.|.++
T Consensus       265 GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~  298 (488)
T 3ond_A          265 GKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDP  298 (488)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            4579999999999999999999999999999864

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=87.73  E-value=0.53  Score=43.80  Aligned_cols=34  Identities=18%  Similarity=0.223  Sum_probs=30.5

Q ss_pred             cccEEEECC-ChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           22 AFDLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        22 ~~DViIIGa-Gl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ...|+|.|| |.-|...+..|.++|++|.++.++.
T Consensus        27 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   61 (343)
T 2b69_A           27 RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFF   61 (343)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             CCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            357999998 9999999999999999999998753

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=87.69  E-value=0.49  Score=43.90  Aligned_cols=35  Identities=14%  Similarity=0.231  Sum_probs=30.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC--eEEEEccCC
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~--~V~vlE~~~   55 (416)
                      ....|+|||+|..|.+.|..|+..|.  .|.++|.+.
T Consensus         5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~   41 (317)
T 3d0o_A            5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDT   41 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            34689999999999999999999995  899999763

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=87.67  E-value=0.4  Score=47.49  Aligned_cols=35  Identities=17%  Similarity=0.173  Sum_probs=31.1

Q ss_pred             cccEEEECCChhHHH-HHHHHhhCCCeEEEEccCCC
Q 014883           22 AFDLIVIGTGLPESV-ISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        22 ~~DViIIGaGl~GL~-aA~~La~~G~~V~vlE~~~~   56 (416)
                      ...|.|||.|-+|++ +|..|.+.|++|.+.|.+..
T Consensus        22 ~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~   57 (494)
T 4hv4_A           22 VRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPN   57 (494)
T ss_dssp             CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCC
Confidence            457999999999997 69999999999999998753

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=87.63  E-value=0.72  Score=42.12  Aligned_cols=35  Identities=11%  Similarity=0.183  Sum_probs=30.4

Q ss_pred             CcccEEEECC-ChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           21 TAFDLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        21 ~~~DViIIGa-Gl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ...+|+|||. |+.|..+|..|.+.|..|+++.++.
T Consensus       164 ~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T  199 (300)
T 4a26_A          164 AGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGT  199 (300)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCC
Confidence            3468999996 5689999999999999999998753

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=87.61  E-value=0.54  Score=42.20  Aligned_cols=32  Identities=22%  Similarity=0.356  Sum_probs=30.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      .+.|||+|-.|...|..|.+.|.+|.+++++.
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~  149 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTP  149 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            79999999999999999999999999998763

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=87.60  E-value=0.5  Score=47.58  Aligned_cols=34  Identities=15%  Similarity=0.118  Sum_probs=32.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      -.++|||+|--|...|..|.+.|++|+++|++..
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~  382 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQES  382 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChH
Confidence            5899999999999999999999999999999976

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=87.54  E-value=0.52  Score=43.98  Aligned_cols=34  Identities=12%  Similarity=0.203  Sum_probs=30.9

Q ss_pred             cccEEEECC-ChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           22 AFDLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        22 ~~DViIIGa-Gl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ...|+|.|| |.-|...+..|.+.|++|.++.++.
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~   44 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDAHRPTYILARPG   44 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence            457999998 9999999999999999999999875

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=87.54  E-value=0.54  Score=43.02  Aligned_cols=34  Identities=18%  Similarity=0.158  Sum_probs=31.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ...|.|||+|-.|..+|..|+..|.+|++++++.
T Consensus       155 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~  188 (293)
T 3d4o_A          155 GANVAVLGLGRVGMSVARKFAALGAKVKVGARES  188 (293)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            3579999999999999999999999999999864

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=87.52  E-value=0.57  Score=42.69  Aligned_cols=31  Identities=6%  Similarity=0.263  Sum_probs=28.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (416)
                      ..++|+|+|-.|.+.|..|++.| +|+++.++
T Consensus       129 k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~  159 (287)
T 1nvt_A          129 KNIVIYGAGGAARAVAFELAKDN-NIIIANRT  159 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHTSSS-EEEEECSS
T ss_pred             CEEEEECchHHHHHHHHHHHHCC-CEEEEECC
Confidence            46999999999999999999999 99999875

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=87.51  E-value=0.46  Score=43.57  Aligned_cols=32  Identities=16%  Similarity=0.101  Sum_probs=29.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--eEEEEccCC
Q 014883           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~--~V~vlE~~~   55 (416)
                      .|.|||+|..|.+.|..|++.|+  +|.++|.+.
T Consensus         2 kI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~   35 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCh
Confidence            68999999999999999999998  999999865

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=87.45  E-value=0.76  Score=43.87  Aligned_cols=51  Identities=16%  Similarity=0.079  Sum_probs=40.3

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE-ECC
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDP  334 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI-~~p  334 (416)
                      ..|-+.|.+.+..  ++|+++++|++|..+  ++. +.|++.+|++++||.|| ++.
T Consensus       127 ~~l~~~L~~~~~~--~~i~~~~~v~~i~~~--~~~-v~v~~~~g~~~~a~~vV~AdG  178 (407)
T 3rp8_A          127 AELQREMLDYWGR--DSVQFGKRVTRCEED--ADG-VTVWFTDGSSASGDLLIAADG  178 (407)
T ss_dssp             HHHHHHHHHHHCG--GGEEESCCEEEEEEE--TTE-EEEEETTSCEEEESEEEECCC
T ss_pred             HHHHHHHHHhCCc--CEEEECCEEEEEEec--CCc-EEEEEcCCCEEeeCEEEECCC
Confidence            4566777776655  889999999999987  444 56888899999999999 443

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=87.39  E-value=0.59  Score=43.26  Aligned_cols=34  Identities=15%  Similarity=0.138  Sum_probs=30.6

Q ss_pred             ccEEEECC-ChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           23 FDLIVIGT-GLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        23 ~DViIIGa-Gl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      ..|+|.|| |.-|...+..|+++|++|.++.++..
T Consensus         4 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~   38 (345)
T 2z1m_A            4 KRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSG   38 (345)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCS
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCc
Confidence            46899998 99999999999999999999998754

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=87.35  E-value=0.62  Score=44.44  Aligned_cols=35  Identities=17%  Similarity=0.230  Sum_probs=32.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (416)
                      ..++|+|||.-+...|..++..|++|+|+|.++.+
T Consensus       205 ~rL~IfGAGhva~ala~~a~~lg~~V~v~D~R~~~  239 (386)
T 2we8_A          205 PRMLVFGAIDFAAAVAQQGAFLGYRVTVCDARPVF  239 (386)
T ss_dssp             CEEEEECCSTHHHHHHHHHHHTTCEEEEEESCTTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhh
Confidence            58999999999999999999999999999998753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	416
d1vg0a1	491	c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {	3e-68
d1vg0a1	491	c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {	1e-20
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	2e-28
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	6e-19
d1vg0a2	113	d.16.1.6 (A:445-557) Rab escort protein 1 {Rat (Ra	3e-10
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	3e-04

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 491

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  222 bits (566), Expect = 3e-68
 Identities = 90/356 (25%), Positives = 141/356 (39%), Gaps = 48/356 (13%)

Query: 62  SSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCA 121
                +D        S       D   +  +     S+++ +  R FN+D+   ++L+  
Sbjct: 177 GKKENSDAKSSTEEPSENVPKVQDNTETPKKNRITYSQIIKEG-RRFNIDLV-SKLLYSR 234

Query: 122 DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRF 181
              +DL++KS  S Y EFK+I        +  +  VP SRA +F  K L ++EK  LM+F
Sbjct: 235 GLLIDLLIKSNVSRYAEFKNITRILAFR-EGTVEQVPCSRADVFNSKQLTMVEKRMLMKF 293

Query: 182 FKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVS 241
                 +       E +         + F+E+L   KL   ++  VL++IAM        
Sbjct: 294 LTFCVEY-------EEHPDEYRAYEGTTFSEYLKTQKLTPNLQYFVLHSIAMTSETTS-- 344

Query: 242 EYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMP 301
                T DG+     +   +GR+ N     ++P+YGQGELPQ FCR  AV G +Y LR  
Sbjct: 345 ----CTVDGLKATKKFLQCLGRYGNT--PFLFPLYGQGELPQCFCRMCAVFGGIYCLRHS 398

Query: 302 VISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDN 361
           V  L+ D+ S   K V    GQ I+S   +++ S+    +                    
Sbjct: 399 VQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSENTC------------------- 439

Query: 362 KGKVARGICITRSSLKPDLSNFLVIFPPRSLFPE----QVTSIRVLQLGGNLAVCP 413
             +V+R  C          SN  V   P S        +       Q+  N   CP
Sbjct: 440 -SRVSR-DCYNDLP-----SNVYVCSGPDSGLGNDNAVKQAETLFQQICPNEDFCP 488

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 491

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 91.7 bits (227), Expect = 1e-20
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTP 79
          P+ FD+IVIGTGLPES+I+AA S SG+ VLH+D   +YG +++S S + L  +L  +   
Sbjct: 4  PSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQEN 63

Query: 80 SSVCPDPLYSDVEI 93
          + V  +      +I
Sbjct: 64 NDVVTENSMWQEQI 77

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  111 bits (277), Expect = 2e-28
 Identities = 71/319 (22%), Positives = 145/319 (45%), Gaps = 28/319 (8%)

Query: 21  TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPS 80
           T +D+IV+GTG+ E ++S   S  GK VLH+D    YG   +S++++ L      +    
Sbjct: 4   TDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISK 63

Query: 81  SVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFK 140
                                    R++N+D+  P+ L       ++++ +  + Y++FK
Sbjct: 64  EERESKFG---------------KDRDWNVDLI-PKFLMANGELTNILIHTDVTRYVDFK 107

Query: 141 SIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVR 200
            +  +++     K+  VP +         +G+ EK ++ +F + +  +    + ++ +  
Sbjct: 108 QVSGSYVFKQG-KIYKVPANEIEAISSPLMGIFEKRRMKKFLEWISSY----KEDDLSTH 162

Query: 201 ISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
              +   +   E   K  L +  K  + +A+A+   D  + +     R    R+ LY  S
Sbjct: 163 QGLDLDKNTMDEVYYKFGLGNSTKEFIGHAMALWTNDDYLQQP---ARPSFERILLYCQS 219

Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
           + R+       +YP+YG GELPQ F R +A+ G  Y+L  P+  +L  +++G ++GV+  
Sbjct: 220 VARYGK--SPYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVK-T 276

Query: 321 SGQDILSHKLVLDPSFTVP 339
                 +  ++ DP++  P
Sbjct: 277 KLGTFKAPLVIADPTY-FP 294

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 84.9 bits (208), Expect = 6e-19
 Identities = 80/322 (24%), Positives = 137/322 (42%), Gaps = 33/322 (10%)

Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+IV+GTGL E ++S   S +GK VLH+D NP+YG   SS++  +  +           
Sbjct: 7   YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQL------ 60

Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
                              +            P+ L      V ++L +  + YL+FK +
Sbjct: 61  -------------LEGPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVV 107

Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
           + +F+     K+  VP +         +G+ EK +  +F   V      D      V   
Sbjct: 108 EGSFVYKGG-KIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVD-- 164

Query: 203 EEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIG 262
               ++   +   K  L   +     +A+A+   D  + +  L   + INR+ LY+ S+ 
Sbjct: 165 --PQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCL---ETINRIKLYSESLA 219

Query: 263 RFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG 322
           R+       +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ +       GV  + G
Sbjct: 220 RYGK--SPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIMENG--KVVGV-KSEG 274

Query: 323 QDILSHKLVLDPSFTVPGSLAS 344
           +     +L+ DPS+ VP  +  
Sbjct: 275 EVARCKQLICDPSY-VPDRVPI 295

>d1vg0a2 d.16.1.6 (A:445-557) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 113

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GDI-like
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.8 bits (132), Expect = 3e-10
 Identities = 10/53 (18%), Positives = 22/53 (41%)

Query: 364 KVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGM 416
           +++R + IT  S+    ++  V             ++RV++L  +   C  G 
Sbjct: 4   QISRAVLITDGSVLRTDADQQVSILTVPAEEPGSFAVRVIELCSSTMTCMKGT 56

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 40.0 bits (92), Expect = 3e-04
 Identities = 22/127 (17%), Positives = 43/127 (33%), Gaps = 8/127 (6%)

Query: 4   NESESELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHF 61
           ++SE +  +   P       D++V+G+G   +  SAA SA+  G  V+ ++  P  G + 
Sbjct: 1   DKSERQAALASAPHDT---VDVVVVGSGG--AGFSAAISATDSGAKVILIEKEPVIGGN- 54

Query: 62  SSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCA 121
           + L+   +            +   P     +       +            S   V +  
Sbjct: 55  AKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDPALVKVLSSHSKDSVDWMT 114

Query: 122 DHAVDLM 128
               DL 
Sbjct: 115 AMGADLT 121

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	416
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	100.0
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	100.0
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.97
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.91
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.85
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.83
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	99.72
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	99.63
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	99.54
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.52
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	99.5
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	99.49
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.48
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.4
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.38
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.36
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.29
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.16
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.02
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.96
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.95
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.93
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	98.9
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.9
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.87
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.84
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.83
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.81
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.81
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	98.79
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.79
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	98.72
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.72
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.71
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.7
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.69
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.68
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.66
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.66
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.65
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.65
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.64
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.63
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.63
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.62
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	98.62
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	98.59
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.59
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.58
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.58
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	98.55
d1vg0a2	113	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	98.54
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.51
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	98.51
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	98.5
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	98.48
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.46
d1d5ta2	97	Guanine nucleotide dissociation inhibitor, GDI {Co	98.46
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.46
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.42
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.4
d2bcgg3	98	Guanine nucleotide dissociation inhibitor, GDI {Ba	98.4
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	98.29
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	98.29
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	98.29
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	98.18
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	97.94
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	97.92
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	97.9
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	97.84
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.82
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.81
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	97.81
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	97.81
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	97.78
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	97.72
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	97.66
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	97.6
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	97.57
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	97.56
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	97.52
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	97.44
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.31
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.3
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	97.27
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.25
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	97.23
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.16
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	97.14
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	97.13
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.11
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	97.04
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.94
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.89
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	96.87
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	96.86
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	96.84
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	96.81
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.75
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	96.73
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	96.72
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	96.68
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	96.66
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	96.58
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.47
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.36
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	96.31
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.28
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.25
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.17
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	96.11
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.09
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	96.07
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	95.97
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	95.95
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.86
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	95.76
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	95.66
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	95.36
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.33
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	95.33
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	95.2
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	95.13
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	94.85
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	94.82
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	94.81
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	94.69
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	94.56
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	94.54
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	94.48
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	94.48
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	94.19
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	94.11
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	94.06
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	93.99
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	93.92
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	93.83
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	93.6
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	93.59
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	93.38
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	93.33
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	93.13
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	92.93
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	92.85
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	92.81
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	92.8
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	92.79
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	92.59
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	92.56
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	92.3
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	92.29
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	92.18
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	92.01
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	91.58
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	91.54
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	91.43
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	91.41
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	91.3
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	91.3
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	91.2
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	91.05
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	91.02
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	90.82
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	90.77
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	90.7
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	90.59
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	90.18
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	90.17
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	90.11
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	90.1
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	90.09
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	89.89
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	89.71
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	89.67
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	89.44
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	89.32
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	89.27
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	88.95
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	88.89
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	88.86
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	88.58
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	88.18
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	87.88
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	87.62
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	87.54
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	87.52
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	87.36
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	87.26
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	87.26
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	87.24
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	87.21
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	86.76
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	86.54
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	86.01
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	86.0
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	85.9
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	85.36
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	85.25
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	84.83
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	84.58
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	84.22
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	83.91
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	83.41
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	83.36
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	83.28
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	83.02
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	82.8
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	82.69
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	82.38
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	81.9
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	81.42
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	81.42
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	81.4
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	81.13
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	80.51

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.6e-51  Score=399.55  Aligned_cols=352  Identities=34%  Similarity=0.551  Sum_probs=274.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCC--C-------------
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVC--P-------------   84 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~--~-------------   84 (416)
                      +++|||||+|+||..++.|++|++.|+||+|+|+|++|||.++|+++.++..|+..........  .             
T Consensus         4 P~e~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~yYGg~~aSl~~~~L~~w~~~~~~~~~~~~~~~~~~~~~~e~e~~   83 (491)
T d1vg0a1           4 PSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQENNDVVTENSMWQEQILENEEA   83 (491)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHHHTC----------CGGGGCCTTEEE
T ss_pred             CCccCEEEECCChHHHHHHHHHHhcCCEEEEecCCCcCCCcccceeHHHHHHHHHhhhcccccccccccccccccccchh
Confidence            6789999999999999999999999999999999999999999999999999987654321100  0             


Q ss_pred             ------CCccccccccc---------------------------------------------------------------
Q 014883           85 ------DPLYSDVEISN---------------------------------------------------------------   95 (416)
Q Consensus        85 ------~~~~~~~~~~~---------------------------------------------------------------   95 (416)
                            .....+++..+                                                               
T Consensus        84 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  163 (491)
T d1vg0a1          84 IPLSSKDKTIQHVEVFCYASQDLHKDVEEAGALQKNHASVTSAQSAEAAEAAETSCLPTAVEPLSMGSCEIPAEQSQCPG  163 (491)
T ss_dssp             EEBCSSCCCEEEEEEEECSCC-----------------------------------------------------------
T ss_pred             cccccccccccccceeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccC
Confidence                  00000000000                                                               


Q ss_pred             ----------------------------------------------cccccccCCCCceEeeCCCCeEEeeCchHHHHHH
Q 014883           96 ----------------------------------------------YASRLLSQHPRNFNLDVSGPRVLFCADHAVDLML  129 (416)
Q Consensus        96 ----------------------------------------------~~~~~~~~~~~~~~~dl~Gp~~~~~~~~~~~~l~  129 (416)
                                                                    .....+.+..|+|+|||. |+++++++.++++|.
T Consensus       164 ~e~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~r~~niDL~-Pk~l~a~g~lv~~Li  242 (491)
T d1vg0a1         164 PESSPEVNDAEATGKKENSDAKSSTEEPSENVPKVQDNTETPKKNRITYSQIIKEGRRFNIDLV-SKLLYSRGLLIDLLI  242 (491)
T ss_dssp             ---------------------------------------------CCCHHHHHHTGGGCCEESS-CCCEESSSHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccc-chheecccHHHHHHH
Confidence                                                          000011234689999997 999999999999999


Q ss_pred             hcCcccccccccccceeeeccCCceeecCCChhhhhhcCCCChHHHHHHHHHHHHHHhhcCCCccccccccccccccCCc
Q 014883          130 KSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSP  209 (416)
Q Consensus       130 ~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t  209 (416)
                      ++++.+|++|+.++..|++. +|++.++|+++.++|+++.+++.+||++|+|+.++.++... +.      ....+.+.|
T Consensus       243 ~S~v~rYlEFk~v~~~~v~~-~g~~~~VP~sr~eif~s~~l~l~eKR~lmkFl~~v~~~~~~-~~------~~~~~~~~~  314 (491)
T d1vg0a1         243 KSNVSRYAEFKNITRILAFR-EGTVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCVEYEEH-PD------EYRAYEGTT  314 (491)
T ss_dssp             HHTGGGGCCEEECCEEEEES-SSSEEECCCSHHHHHHCSSSCHHHHHHHHHHHHHHHTGGGC-HH------HHHTTTTSB
T ss_pred             HcChhhheeEEEeceEEEec-CCeEEECCCCHHHHhcCCCCCHHHHHHHHHHHHHHhhccCC-cc------ccccccCCc
Confidence            99999999999999999886 88999999999999999999999999999999999876432 21      123456789


Q ss_pred             HHHHHHhcCCChhHHHHHHHHHHhccCCchhhhhhhchhhHHHHHHHHHhhhccccCCCccEEeecCCcchHHHHHHHHH
Q 014883          210 FAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRA  289 (416)
Q Consensus       210 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~  289 (416)
                      |.+||+++++++.+++++.|++++....      ..++.+++.++..|+.|+++||.  .+|+||.||.++|+|+|||++
T Consensus       315 ~~e~l~~~~l~~~~~~~i~~aial~~~~------~~~~~~~l~ri~~yl~Slg~yG~--spflyp~YG~gEipQ~FcR~~  386 (491)
T d1vg0a1         315 FSEYLKTQKLTPNLQYFVLHSIAMTSET------TSCTVDGLKATKKFLQCLGRYGN--TPFLFPLYGQGELPQCFCRMC  386 (491)
T ss_dssp             HHHHHTTSSSCHHHHHHHHHHTTC--CC------SCBHHHHHHHHHHHHHHTTSSSS--SSEEEETTCTTHHHHHHHHHH
T ss_pred             HHHHHHHcCCChHHHHHHHhheeccCCC------CccHHHHHHHHHHHHHHHHhhCC--CCeEeecCCcchHHHHHHHHH
Confidence            9999999999999999999998875322      24577889999999999999985  569999999999999999999


Q ss_pred             HhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCCCCCCCCCchhhhhhhhhhccccCCcceEEEEE
Q 014883          290 AVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGI  369 (416)
Q Consensus       290 ~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~k~i  369 (416)
                      +..||+++||++|++|..+.+++++.+|.+++|++++|++||++|.+...+.                    .+.+.|. 
T Consensus       387 AV~Gg~Y~L~~~i~~i~~d~e~~~~~~v~~~~g~~i~~k~vI~~psy~p~~~--------------------~~~v~r~-  445 (491)
T d1vg0a1         387 AVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSENT--------------------CSRVSRD-  445 (491)
T ss_dssp             HHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGGBCTTT--------------------TTTCCGG-
T ss_pred             HhcCcEEEcCCccceEEEecCCCeEEEEEccCCcEEecCeEEECHHhCCccc--------------------cceeeeh-
Confidence            9999999999999999997668888899989999999999999998863221                    2223331 


Q ss_pred             EEecCCCCCCCCceEEEeCCCCCCCCCCCeEE----EEEecCCCccCCC
Q 014883          370 CITRSSLKPDLSNFLVIFPPRSLFPEQVTSIR----VLQLGGNLAVCPL  414 (416)
Q Consensus       370 ~i~~~p~~~~~~~~~~~~pp~~~~~~~~~~v~----~~~~~~~~~~~p~  414 (416)
                      +     +...++..+|+.||....++.....+    +.+++.++++||.
T Consensus       446 c-----~~~~~s~~~i~~~p~~~~~~d~~v~~a~~~~~~~~p~~~~cP~  489 (491)
T d1vg0a1         446 C-----YNDLPSNVYVCSGPDSGLGNDNAVKQAETLFQQICPNEDFCPA  489 (491)
T ss_dssp             G-----SSSCCTTEEEECCCCSSSSSHHHHHHHHHHHHHHSTTCCSSCC
T ss_pred             h-----hcCCCceEEEECCCCcCCccchhhhhHhhhhhhcCCCCCcCCC
Confidence            2     23344666666667654432211122    2466999999996

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.3e-38  Score=288.66  Aligned_cols=292  Identities=25%  Similarity=0.491  Sum_probs=220.4

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCcccccccccccc
Q 014883           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (416)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (416)
                      |+++|||||||||++||+||++|+++|++|+||||++++||+++|++++++..+......         .. .     ..
T Consensus         2 m~~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~---------~~-~-----~~   66 (297)
T d2bcgg1           2 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPI---------SK-E-----ER   66 (297)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHCSSCC---------CH-H-----HH
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCcceEEeeccccccccCCCcc---------cc-c-----cc
Confidence            677899999999999999999999999999999999999999999998765433221110         00 0     00


Q ss_pred             ccccCCCCceEeeCCCCeEEeeCchHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhhcCCCChHHHHHH
Q 014883           99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (416)
Q Consensus        99 ~~~~~~~~~~~~dl~Gp~~~~~~~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l  178 (416)
                      +........|.+|+. |+++...+.+...+.+.+...+.+|..+++.+++. ++...++|....+++.....+..+++.+
T Consensus        67 ~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (297)
T d2bcgg1          67 ESKFGKDRDWNVDLI-PKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFK-QGKIYKVPANEIEAISSPLMGIFEKRRM  144 (297)
T ss_dssp             HHHHCCGGGCCEESS-CCBEETTSHHHHHHHHHTGGGTCCEEECCCEEEEE-TTEEEECCSSHHHHHHCTTSCHHHHHHH
T ss_pred             cccccccccceeccC-cccccCCCcceeeeeeccccccccccccCcccccc-cCCccccccchhhhhhccccccccchhh
Confidence            111123356789995 99998899999999999999999999988888764 7888999998888888778888888888


Q ss_pred             HHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHHhccCCchhhhhhhchhhHHHHHHHHH
Q 014883          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN  258 (416)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  258 (416)
                      .+|...+..+......    ......+...++.++++++++++.+++++.+.+........   ...++...+.++..+.
T Consensus       145 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  217 (297)
T d2bcgg1         145 KKFLEWISSYKEDDLS----THQGLDLDKNTMDEVYYKFGLGNSTKEFIGHAMALWTNDDY---LQQPARPSFERILLYC  217 (297)
T ss_dssp             HHHHHHHHHCBTTBGG----GSTTCCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSSSGG---GGSBHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhcccc----chhhhcccchhhhhhhhhhccCHHHHHHHHHHHhhhccccc---cchhhhhhhhhhhhhh
Confidence            8887766554322110    00112345578999999999999998877665433221111   1234555566666666


Q ss_pred             hhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCC
Q 014883          259 SSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFT  337 (416)
Q Consensus       259 ~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~~~  337 (416)
                      .+...+..  +++.+|+||+++|+++|++.++++|++|++|++|++|..+.+++++++|+ .+|++++||+||++|+++
T Consensus       218 ~~~~~~~~--~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v~-~~g~~~~ad~VI~~~s~~  293 (297)
T d2bcgg1         218 QSVARYGK--SPYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVK-TKLGTFKAPLVIADPTYF  293 (297)
T ss_dssp             HHHHHHSS--CSEEEETTCTTHHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEE-ETTEEEECSCEEECGGGC
T ss_pred             hccccccc--CcceeccCcHHHHHHHHHHHHHhcCCEEEeCCEeeEEEEECCCCEEEEEE-cCCEEEECCEEEEChhhc
Confidence            66555443  34889999999999999999999999999999999999875467777776 689999999999999876

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=8.5e-24  Score=201.08  Aligned_cols=278  Identities=13%  Similarity=0.073  Sum_probs=158.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCccccccccccccccccC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ  103 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (416)
                      ||||||||++||+||+.|+++|++|+||||++++||+++|++..+                                   
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~GGr~~t~~~~~-----------------------------------   45 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQK-----------------------------------   45 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSBTTCCEECCTT-----------------------------------
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcceeeEEECCC-----------------------------------
Confidence            899999999999999999999999999999999999999976432                                   


Q ss_pred             CCCceEeeCCCCeEEeeC-chHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhhcCCCChHHHHHHHHHH
Q 014883          104 HPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFF  182 (416)
Q Consensus       104 ~~~~~~~dl~Gp~~~~~~-~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l~~~~  182 (416)
                         .+.+|+ |++++... ..+.+++.++|+..+.... ..... +..+...........     .............+.
T Consensus        46 ---g~~~d~-G~~~~~~~~~~~~~l~~~lgl~~~~~~~-~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~  114 (383)
T d2v5za1          46 ---VKYVDL-GGSYVGPTQNRILRLAKELGLETYKVNE-VERLI-HHVKGKSYPFRGPFP-----PVWNPITYLDHNNFW  114 (383)
T ss_dssp             ---TSCEES-SCCEECTTCHHHHHHHHHTTCCEEECCC-SSEEE-EEETTEEEEECSSSC-----CCCSHHHHHHHHHHH
T ss_pred             ---CcEEeC-CceEeCCCChHHHHHHHHcCCcceeccC-ccceE-EecCccccccccccc-----chhhhhhhhhHHHHH
Confidence               233677 58887544 3677888888876442221 11111 111222222211100     011111112222222


Q ss_pred             HHHHhhcCCCcccc-ccccccccccCCcHHHHHHhcCCChhHHHHHHHHH-HhccCCchhhhhhhchhhHHHHHHHHHhh
Q 014883          183 KLVQGHLSLDESEE-NNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAI-AMADYDQEVSEYVLKTRDGINRLALYNSS  260 (416)
Q Consensus       183 ~~~~~~~~~~~~~~-~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~~~~~~~~~s  260 (416)
                      .............. .......++...++.+++++....+....+..... ........    ..+....+.........
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  190 (383)
T d2v5za1         115 RTMDDMGREIPSDAPWKAPLAEEWDNMTMKELLDKLCWTESAKQLATLFVNLCVTAETH----EVSALWFLWYVKQCGGT  190 (383)
T ss_dssp             HHHHHHHTTSCTTCGGGSTTHHHHHTSBHHHHHHHHCSSHHHHHHHHHHHHHHHSSCTT----TSBHHHHHHHHHTTTCH
T ss_pred             HHHHHhhhhcccccccchhhhhhhhhhHHHHHHHHhccchHHHHHHHHhhhhhhccccc----hhhHHHHHHHHHhhccc
Confidence            22211111101000 01111234456789999998888776666543211 11111111    12222222211111000


Q ss_pred             hcccc-CCCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC-CCCCC
Q 014883          261 IGRFQ-NALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTV  338 (416)
Q Consensus       261 ~~~~g-~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~-p~~~~  338 (416)
                      ..... ...+....+.+|++.++++++   +..|++|++|++|++|..+  +++ +.|++.+|++++||+||++ |...+
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~g~~i~~~~~v~~I~~~--~~~-v~v~~~~g~~~~ad~vI~a~p~~~~  264 (383)
T d2v5za1         191 TRIISTTNGGQERKFVGGSGQVSERIM---DLLGDRVKLERPVIYIDQT--REN-VLVETLNHEMYEAKYVISAIPPTLG  264 (383)
T ss_dssp             HHHHCSTTSTTSEEETTCTHHHHHHHH---HHHGGGEEESCCEEEEECS--SSS-EEEEETTSCEEEESEEEECSCGGGG
T ss_pred             ccccccccCcceeeeccchhHHHHHHH---HHcCCeEEecCcceEEEec--CCe-EEEEECCCCEEECCEEEECCCHHHH
Confidence            00000 111235678999999999775   5679999999999999886  444 5688899999999999965 44444


Q ss_pred             CCCCCCchhhhhhhhhhcccc
Q 014883          339 PGSLASSHQQLQESFQAFSLS  359 (416)
Q Consensus       339 ~~l~~~~~~~l~~~~~~~~~~  359 (416)
                      .++  .++|+||..+.+..++
T Consensus       265 ~~~--~~~p~l~~~~~~~~~~  283 (383)
T d2v5za1         265 MKI--HFNPPLPMMRNQMITR  283 (383)
T ss_dssp             GGS--EEESCCCHHHHHHTTS
T ss_pred             hhC--ccCCCCCHHHHHHHHH
Confidence            553  4577787766655443

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.85  E-value=5.9e-21  Score=176.99  Aligned_cols=77  Identities=13%  Similarity=0.290  Sum_probs=62.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCcccccccccccccccc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS  102 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (416)
                      .||+|||||++||+||++|+++|++|+||||++++||+++|++.+|                                  
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~g----------------------------------   46 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAG----------------------------------   46 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEEETT----------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCceEEEEeeCC----------------------------------
Confidence            3899999999999999999999999999999999999999987543                                  


Q ss_pred             CCCCceEeeCCCCeEEeeCc-hHHHHHHhcCccccccc
Q 014883          103 QHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEF  139 (416)
Q Consensus       103 ~~~~~~~~dl~Gp~~~~~~~-~~~~~l~~~g~~~~~~f  139 (416)
                           |.+|. |++++.... .+.+++.+.++...+.+
T Consensus        47 -----~~~d~-G~~~~~~~~~~~~~l~~~~~~~~~~~~   78 (347)
T d2ivda1          47 -----YLVEQ-GPNSFLDREPATRALAAALNLEGRIRA   78 (347)
T ss_dssp             -----EEEES-SCCCEETTCHHHHHHHHHTTCGGGEEC
T ss_pred             -----EEEec-CceEEecCCHHHHHHHHHhccccccee
Confidence                 34677 477665444 56677777777665443

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.83  E-value=1.1e-19  Score=170.98  Aligned_cols=264  Identities=12%  Similarity=0.078  Sum_probs=138.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCcccccccccccccccc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS  102 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (416)
                      .+|||||||++||+||++|+++|++|+|||+++++||++.|++...                                  
T Consensus        31 kkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~----------------------------------   76 (370)
T d2iida1          31 KHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEE----------------------------------   76 (370)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEETT----------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCeeEEEecCC----------------------------------
Confidence            5999999999999999999999999999999999999999976432                                  


Q ss_pred             CCCCceEeeCCCCeEEeeCc-hHHHHHHhcCcccccccccccceeeeccCCceeecCCChh--hhhhc------CCCChH
Q 014883          103 QHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRA--AIFKD------KSLGLM  173 (416)
Q Consensus       103 ~~~~~~~~dl~Gp~~~~~~~-~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~--~~~~~------~~l~~~  173 (416)
                         ..+.+|. |++++.... .+.+++.+.++....-.......+.+. ++..........  .....      ......
T Consensus        77 ---~g~~~d~-G~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (370)
T d2iida1          77 ---AGWYANL-GPMRLPEKHRIVREYIRKFDLRLNEFSQENDNAWYFI-KNIRKKVGEVKKDPGLLKYPVKPSEAGKSAG  151 (370)
T ss_dssp             ---TTEEEES-SCCCEETTCHHHHHHHHHTTCCEEEECSCCTTSEEEE-TTEEEEHHHHHHCGGGGCCCCCGGGTTCCHH
T ss_pred             ---CCceecc-CceeecCccHHHHHHHHHhCCccceeeccCCceEEec-CCccccchhhhhhhhhhhhhhhhhhhhhhhH
Confidence               2355777 477665444 556667776654321111111122221 222111100000  00000      000000


Q ss_pred             H--HHHHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcC-CChhHHHHHHHHHHhccCCchhhhhhhchhhH
Q 014883          174 E--KNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMK-LPHKIKSIVLYAIAMADYDQEVSEYVLKTRDG  250 (416)
Q Consensus       174 ~--k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  250 (416)
                      .  ...+.++...+....        .......+...+..+++.... .......++......   ...   ...+..  
T Consensus       152 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~--  215 (370)
T d2iida1         152 QLYEESLGKVVEELKRTN--------CSYILNKYDTYSTKEYLIKEGDLSPGAVDMIGDLLNE---DSG---YYVSFI--  215 (370)
T ss_dssp             HHHHHHTHHHHHHHHHSC--------HHHHHHHHTTSBHHHHHHHTSCCCHHHHHHHHHHTTC---GGG---TTSBHH--
T ss_pred             HHHHHHHHHHHHHHHhhh--------hhhhhhhccchhHHHHHHHhccccHHHHHHhhccccc---cch---hhhHHH--
Confidence            0  011111111111110        000012234456677776543 444333333221110   000   001111  


Q ss_pred             HHHHHHHHhhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcE-EEEEe--CCCcEEEc
Q 014883          251 INRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSY-KGVRL--ASGQDILS  327 (416)
Q Consensus       251 ~~~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~-~gV~l--~~G~~i~A  327 (416)
                       .... ..... ...   ..+.++.+|++.++++|+   +..|++|++|++|++|..+  ++++ +.+..  .++++++|
T Consensus       216 -~~~~-~~~~~-~~~---~~~~~~~~~~~~l~~~l~---~~~g~~i~~~~~V~~I~~~--~~~v~v~~~~~~~~~~~~~a  284 (370)
T d2iida1         216 -ESLK-HDDIF-AYE---KRFDEIVDGMDKLPTAMY---RDIQDKVHFNAQVIKIQQN--DQKVTVVYETLSKETPSVTA  284 (370)
T ss_dssp             -HHHH-HHHHH-TTC---CCEEEETTCTTHHHHHHH---HHTGGGEESSCEEEEEEEC--SSCEEEEEECSSSCCCEEEE
T ss_pred             -hhhh-hhhhh-ccc---cccccchhhHHHHHHHHH---HhcCCccccCceEEEEEEe--CCeEEEEEEecCCCeEEEEe
Confidence             1111 11111 111   236789999999999875   5679999999999999987  4433 23332  24568999


Q ss_pred             CEEEEC-CCCCCCCCCCCchhhhhhhhh
Q 014883          328 HKLVLD-PSFTVPGSLASSHQQLQESFQ  354 (416)
Q Consensus       328 d~VI~~-p~~~~~~l~~~~~~~l~~~~~  354 (416)
                      |+||+. |...+..+  .++|+||+.+.
T Consensus       285 D~VI~A~p~~~l~~i--~~~p~l~~~~~  310 (370)
T d2iida1         285 DYVIVCTTSRAVRLI--KFNPPLLPKKA  310 (370)
T ss_dssp             SEEEECSCHHHHTTS--EEESCCCHHHH
T ss_pred             eEEEecCCHHHHhhC--ccCCCCCHHHH
Confidence            999965 44333443  45677776543

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.72  E-value=5.5e-17  Score=150.10  Aligned_cols=77  Identities=18%  Similarity=0.211  Sum_probs=61.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCcccccccccccccccc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS  102 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (416)
                      .+|||||||++||+||++|+++|++|+|||+++++||+++|++.++                                  
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~g----------------------------------   47 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDG----------------------------------   47 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEETT----------------------------------
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCcCceEEeccCC----------------------------------
Confidence            3699999999999999999999999999999999999999986543                                  


Q ss_pred             CCCCceEeeCCCCeEEeeCc-hHHHHHHhcCccccccc
Q 014883          103 QHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEF  139 (416)
Q Consensus       103 ~~~~~~~~dl~Gp~~~~~~~-~~~~~l~~~g~~~~~~f  139 (416)
                           |.+|. |++++...+ .+.+++.+.+......+
T Consensus        48 -----~~~d~-G~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (373)
T d1seza1          48 -----LIWDE-GANTMTESEGDVTFLIDSLGLREKQQF   79 (373)
T ss_dssp             -----EEEES-SCCCBCCCSHHHHHHHHHTTCGGGEEC
T ss_pred             -----EEEec-CceEEeCCCHHHHHHHHHhCCcccccc
Confidence                 44677 477765443 66777777776554433

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.63  E-value=1.2e-16  Score=144.59  Aligned_cols=45  Identities=22%  Similarity=0.398  Sum_probs=41.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC-eEEEEccCCCCCCcccccChhh
Q 014883           24 DLIVIGTGLPESVISAAASASGK-SVLHLDPNPFYGSHFSSLSIAD   68 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~-~V~vlE~~~~~GG~~~s~~~~~   68 (416)
                      ||||||||++||+||+.|+++|+ +|+||||++++||+++|++.++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~GG~~~t~~~~g   47 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAG   47 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEEEETT
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCCCceEEEeccCC
Confidence            89999999999999999999996 6999999999999999986543

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=3.3e-15  Score=140.01  Aligned_cols=74  Identities=15%  Similarity=0.219  Sum_probs=61.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCccccccccccccccc
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL  101 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (416)
                      +.+|||||||++||+||+.|+++|++|+||||++++|||++|++.+|                                 
T Consensus         5 ~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GGr~~t~~~~g---------------------------------   51 (449)
T d2dw4a2           5 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGN---------------------------------   51 (449)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCCEEEETT---------------------------------
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcccEEEEEeCC---------------------------------
Confidence            46899999999999999999999999999999999999999987643                                 


Q ss_pred             cCCCCceEeeCCCCeEEeeC--chHHHHHHhcCccc
Q 014883          102 SQHPRNFNLDVSGPRVLFCA--DHAVDLMLKSGASH  135 (416)
Q Consensus       102 ~~~~~~~~~dl~Gp~~~~~~--~~~~~~l~~~g~~~  135 (416)
                            |.+|+ |+++++..  ..+.+++.++|++.
T Consensus        52 ------~~~d~-G~~~i~~~~~~~~~~l~~~lgl~~   80 (449)
T d2dw4a2          52 ------YVADL-GAMVVTGLGGNPMAVVSKQVNMEL   80 (449)
T ss_dssp             ------EEEES-SCCEECCSBTCHHHHHHHHHTCCE
T ss_pred             ------EEEEC-CCEEECCCCCcHHHHHHHHcCCcc
Confidence                  44777 47887533  36778888888753

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.52  E-value=3.1e-14  Score=130.19  Aligned_cols=59  Identities=19%  Similarity=0.242  Sum_probs=47.2

Q ss_pred             EEeecCCc---chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (416)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (416)
                      .+.+.+|.   ..+.++|.+.+++.|++++.+++|++|..+  +++ +.|++++| +|+||+||+.
T Consensus       139 ~~~~~~g~~~p~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~--~~~-v~V~t~~g-~i~a~~VViA  200 (281)
T d2gf3a1         139 IFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVEDFDIS--PDS-VKIETANG-SYTADKLIVS  200 (281)
T ss_dssp             EEETTCEEEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEEC--SSC-EEEEETTE-EEEEEEEEEC
T ss_pred             eeccccccccccccccccccccccccccccCCcEEEEEEEE--CCE-EEEEECCc-EEEcCEEEEC
Confidence            34555553   578899999999999999999999999987  454 57887666 7999999954

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=99.50  E-value=2e-14  Score=133.87  Aligned_cols=102  Identities=15%  Similarity=0.236  Sum_probs=70.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhhhHhhhhcCCCCCCCCCCCccccccccccccccc
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL  101 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (416)
                      ...|+|||||++||+||..|+++|++|+|+|+++++||++.|+....                                 
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG~~~t~~~~~---------------------------------   48 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSE---------------------------------   48 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCEEECTT---------------------------------
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcCeeeEEEecC---------------------------------
Confidence            35799999999999999999999999999999999999999875321                                 


Q ss_pred             cCCCCceEeeCCCCeEEeeCc-hHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhh
Q 014883          102 SQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIF  165 (416)
Q Consensus       102 ~~~~~~~~~dl~Gp~~~~~~~-~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~  165 (416)
                         ...+..|. ||++++... .+.+.+.+.     .+|...........+|+.+++|.+...+.
T Consensus        49 ---~g~~~~~~-Gphif~t~~~~v~~~~~~~-----~~~~~~~~~~~~~~~g~~~~~P~~~~~i~  104 (314)
T d2bi7a1          49 ---TNVMVHVY-GPHIFHTDNETVWNYVNKH-----AEMMPYVNRVKATVNGQVFSLPINLHTIN  104 (314)
T ss_dssp             ---TCCEEETT-SCCCEEESCHHHHHHHHTT-----SCEEECCCCEEEEETTEEEEESCCHHHHH
T ss_pred             ---CCceEEec-CceeecCccHHHHHHHHHh-----hhhhhhccccceeecceeeccCccHHHHH
Confidence               01233455 588876665 444444432     23433222221123789999988765443

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=2.2e-14  Score=132.58  Aligned_cols=47  Identities=21%  Similarity=0.347  Sum_probs=43.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccChhh
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIAD   68 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~~~~   68 (416)
                      +|||||||||++||+||..|+++|++|+|+|+++++||+|.|.+..|
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~~~t~~~~g   47 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEG   47 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCEEEETT
T ss_pred             CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccceEEeCcCC
Confidence            48999999999999999999999999999999999999999976543

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.48  E-value=2.1e-13  Score=122.26  Aligned_cols=66  Identities=21%  Similarity=0.317  Sum_probs=52.9

Q ss_pred             eecCC-cchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE-CCCCCCCC
Q 014883          273 YPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL-DPSFTVPG  340 (416)
Q Consensus       273 ~p~gG-~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~-~p~~~~~~  340 (416)
                      +|... ...+.+.|.+.+++.|++|+++++|++|..+  ++++.+|.+++|++++||.||+ +....+|+
T Consensus       103 ~~~~~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~--~~~~~~v~~~~g~~i~a~~vI~AtGg~S~p~  170 (251)
T d2i0za1         103 FPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYE--NGQTKAVILQTGEVLETNHVVIAVGGKSVPQ  170 (251)
T ss_dssp             EETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE--TTEEEEEEETTCCEEECSCEEECCCCSSSGG
T ss_pred             ecccccHHHHHHHHHHHHHHcCCcccCCcEEEEEEEE--CCEEEEEEeCCCCeEecCeEEEccCCccccc
Confidence            44333 4678889999999999999999999999987  7888889999999999999994 33333344

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.40  E-value=4.6e-12  Score=116.79  Aligned_cols=60  Identities=25%  Similarity=0.273  Sum_probs=49.5

Q ss_pred             EEeecCCc---chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (416)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (416)
                      .+.+..|.   ..+.++|.+.++..|++|+.+++|++|.++  ++++++|++++| +|+||+||+.
T Consensus       137 ~~~~~~g~~~p~~l~~~l~~~a~~~gv~i~~~~~V~~i~~~--~~~v~~V~T~~g-~i~a~~VV~a  199 (305)
T d1pj5a2         137 LHVPSDGLASAARAVQLLIKRTESAGVTYRGSTTVTGIEQS--GGRVTGVQTADG-VIPADIVVSC  199 (305)
T ss_dssp             EEETTCEEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE--TTEEEEEEETTE-EEECSEEEEC
T ss_pred             eecccccccchhhhhhhHHhhhhcccccccCCceEEEEEEe--CCEEEEEeccce-eEECCEEEEe
Confidence            34455553   478899999999999999999999999998  888889997555 7999999943

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.38  E-value=5.3e-13  Score=120.07  Aligned_cols=70  Identities=16%  Similarity=0.196  Sum_probs=51.7

Q ss_pred             EeecCCcchHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE-CCCCCCCCC
Q 014883          272 IYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL-DPSFTVPGS  341 (416)
Q Consensus       272 ~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~-~p~~~~~~l  341 (416)
                      .++......+.+.|.+.++..|++|+++++|++|+..+++..+..+...++++++||+||+ +....+|.+
T Consensus       102 ~~~~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~~VIiAtGG~S~p~~  172 (253)
T d2gqfa1         102 LFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGGLSMPGL  172 (253)
T ss_dssp             EEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEEECCCCSSCGGG
T ss_pred             cccccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCEEEEeCEEEEcCCccccccc
Confidence            4566677889999999999999999999999999986323333334446888999999994 333333543

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.36  E-value=5.3e-13  Score=121.31  Aligned_cols=59  Identities=19%  Similarity=0.218  Sum_probs=47.1

Q ss_pred             EEeecCCc---chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (416)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (416)
                      .+.+..|.   ..+.++|.+.+...|++|+.+++|++|..+   ++.++|++++| +|.||+||+.
T Consensus       140 ~~~~~~g~i~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~---~~~~~V~t~~g-~i~a~~vV~A  201 (276)
T d1ryia1         140 SFIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERD---GEALFIKTPSG-DVWANHVVVA  201 (276)
T ss_dssp             EEETTCCBCCHHHHHHHHHHHHHHTTCEEETTCCCCEEECS---SSSEEEEETTE-EEEEEEEEEC
T ss_pred             EEeccceeeecccchhHHHHHHHHcCCEEecceEEEeEEee---cceEEEecCCe-EEEcCEEEEC
Confidence            44556663   478899999999999999999999999864   44578987665 7999999954

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.29  E-value=1.3e-10  Score=106.97  Aligned_cols=43  Identities=23%  Similarity=0.447  Sum_probs=39.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (416)
                      .++|||||||+|++||+||+.|+++|++|+||||++..||.+.
T Consensus        14 ~e~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~gG~s~   56 (308)
T d1y0pa2          14 HDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAK   56 (308)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGG
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcce
Confidence            4579999999999999999999999999999999999988653

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.16  E-value=1e-09  Score=101.43  Aligned_cols=61  Identities=21%  Similarity=0.211  Sum_probs=47.4

Q ss_pred             EeecCCc---chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeC--CCc--EEEcCEEEEC
Q 014883          272 IYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA--SGQ--DILSHKLVLD  333 (416)
Q Consensus       272 ~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~--~G~--~i~Ad~VI~~  333 (416)
                      .++.+|.   ..|.++|.+.++..|++++++++|+++.++ +++++++|...  +++  .|.|+.||+.
T Consensus       138 ~~~~~g~~~g~~i~~~L~~~~~~~g~~i~~~~~v~~l~~~-~~g~V~Gv~~~~~~~~~~~i~Ak~VVlA  205 (317)
T d1qo8a2         138 HRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVN-DDHSVVGAVVHGKHTGYYMIGAKSVVLA  205 (317)
T ss_dssp             EECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEEC-TTSBEEEEEEEETTTEEEEEEEEEEEEC
T ss_pred             cccccccccchhhhHHHHHHhhhccceeeeccchhheeec-ccccceeeEeecccceEEEEeccceEEe
Confidence            3455553   358899999999999999999999999886 37888888654  343  4789999943

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.02  E-value=4.4e-11  Score=105.46  Aligned_cols=46  Identities=17%  Similarity=0.239  Sum_probs=42.4

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccccc
Q 014883           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (416)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~   64 (416)
                      |..+|||||||||.+||+||.+|++.|++|+|+|+++.+||.|...
T Consensus         2 m~~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~GG~~~~~   47 (233)
T d1v59a1           2 INKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNV   47 (233)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHH
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCcceEeEEe
Confidence            4568999999999999999999999999999999999999987653

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.96  E-value=1.7e-10  Score=100.86  Aligned_cols=44  Identities=18%  Similarity=0.240  Sum_probs=41.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccccc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~   64 (416)
                      ++|||||||||.+||+||.++++.|++|+|+|+++.+||.|...
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~~~~   45 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNV   45 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCeeecc
Confidence            47999999999999999999999999999999999999987643

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.95  E-value=2.2e-10  Score=104.03  Aligned_cols=43  Identities=16%  Similarity=0.137  Sum_probs=39.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhh-CCCeEEEEccCCCCCCcccc
Q 014883           21 TAFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~-~G~~V~vlE~~~~~GG~~~s   63 (416)
                      .++||||||||++||+||+.|++ .|++|+|||+++++||.+++
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~   75 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWL   75 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceee
Confidence            36899999999999999999987 59999999999999998875

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.93  E-value=6.6e-10  Score=93.45  Aligned_cols=41  Identities=27%  Similarity=0.421  Sum_probs=39.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (416)
                      ..+|+|||||++||+||..|+++|++|+|+|+.+++||...
T Consensus        43 ~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~   83 (179)
T d1ps9a3          43 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFN   83 (179)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHH
T ss_pred             CcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEE
Confidence            46999999999999999999999999999999999999765

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.90  E-value=4e-10  Score=103.25  Aligned_cols=43  Identities=19%  Similarity=0.244  Sum_probs=40.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      ..+||||||||++||++|+.|.++|.+|+||||++.+||.+..
T Consensus         6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~   48 (298)
T d1w4xa1           6 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYW   48 (298)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHH
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCccccccc
Confidence            5799999999999999999999999999999999999997654

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.90  E-value=3.1e-10  Score=99.87  Aligned_cols=45  Identities=20%  Similarity=0.282  Sum_probs=41.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~   64 (416)
                      ..+|||||||||.+||+||.+|+++|++|+|+|++..+||.+.+.
T Consensus         4 ~~dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~GG~~~~~   48 (229)
T d1ojta1           4 DAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNV   48 (229)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHH
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeecc
Confidence            357999999999999999999999999999999999999977543

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.87  E-value=5.6e-10  Score=105.89  Aligned_cols=42  Identities=17%  Similarity=0.264  Sum_probs=38.8

Q ss_pred             cccEEEECCChhHHHHHHHHhh------CCCeEEEEccCCCCCCcccc
Q 014883           22 AFDLIVIGTGLPESVISAAASA------SGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~------~G~~V~vlE~~~~~GG~~~s   63 (416)
                      +|||||||||++||+||+.|||      +|++|+||||+..+|....+
T Consensus        32 e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~~   79 (380)
T d2gmha1          32 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLS   79 (380)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCccc
Confidence            5999999999999999999998      89999999999999877654

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.84  E-value=9.8e-10  Score=96.04  Aligned_cols=42  Identities=21%  Similarity=0.242  Sum_probs=38.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (416)
                      ++|||||||||.+||+||.+|+++|++|+|+|+....|+...
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~~~~~   43 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTA   43 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccCCCcccc
Confidence            579999999999999999999999999999999887776643

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.83  E-value=7.3e-10  Score=96.50  Aligned_cols=42  Identities=19%  Similarity=0.264  Sum_probs=38.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      .+|||||||||.+|++||.+|++.|++|+|+|++ .+||.|..
T Consensus         1 k~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~-~~GGtc~~   42 (217)
T d1gesa1           1 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTCVN   42 (217)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEecc-CcCCeEec
Confidence            3699999999999999999999999999999995 69997643

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.81  E-value=1.4e-09  Score=95.91  Aligned_cols=49  Identities=18%  Similarity=0.279  Sum_probs=43.2

Q ss_pred             CCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           14 PYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        14 ~~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      ++++ .....+|+|||||++||+||..|++.|++|+|+|+++++||.+..
T Consensus        42 ~~~~-~~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~~   90 (233)
T d1djqa3          42 KFRQ-TKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQ   90 (233)
T ss_dssp             CCCC-CSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHH
T ss_pred             ccCc-ccCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCcccc
Confidence            3444 356689999999999999999999999999999999999998764

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.81  E-value=2e-09  Score=95.81  Aligned_cols=42  Identities=17%  Similarity=0.109  Sum_probs=36.3

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (416)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (416)
                      |.+..+|||||||++||++|+.|+++|++|+|+||+...+|.
T Consensus         3 ~~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~~~~~   44 (268)
T d1c0pa1           3 MHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDVS   44 (268)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTCTT
T ss_pred             CCCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCCCCCCc
Confidence            445679999999999999999999999999999998644443

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=98.79  E-value=1.7e-09  Score=100.16  Aligned_cols=43  Identities=23%  Similarity=0.434  Sum_probs=39.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (416)
                      .+++||||||+|++||+||+.|+++|++|+||||.+..||.+.
T Consensus        21 ~et~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~gG~s~   63 (322)
T d1d4ca2          21 KETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTK   63 (322)
T ss_dssp             CEECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSCTTGG
T ss_pred             CCcceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCccc
Confidence            4468999999999999999999999999999999999998653

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.79  E-value=2e-09  Score=101.26  Aligned_cols=44  Identities=14%  Similarity=0.206  Sum_probs=38.3

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (416)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (416)
                      |..+|||||||+|.+|+++|.+|+++|+||+|||+....++...
T Consensus         1 md~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~~~~~~   44 (379)
T d2f5va1           1 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLKI   44 (379)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSSSST
T ss_pred             CCCcccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCCCCccc
Confidence            45689999999999999999999999999999999766655443

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=98.72  E-value=2.6e-09  Score=99.30  Aligned_cols=52  Identities=15%  Similarity=0.221  Sum_probs=42.9

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~Ad~VI~  332 (416)
                      ..+..+|.+.+...|.+|+.+++|.+++.+  +++++++..   .+|+  +|.|+.||+
T Consensus       158 ~~i~~~l~~~~~~~gv~i~~~~~~~~li~~--~~~v~g~~~~~~~~g~~~~i~Ak~Vvl  214 (336)
T d2bs2a2         158 HTMLFAVANECLKLGVSIQDRKEAIALIHQ--DGKCYGAVVRDLVTGDIIAYVAKGTLI  214 (336)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEEE--TTEEEEEEEEETTTCCEEEEECSEEEE
T ss_pred             HHHHHHHHHHHHhccccccceeeeeecccc--cccccceeEEeccCCcEEEEecCeEEE
Confidence            468888999999999999999999999987  788776654   3565  478999994

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.72  E-value=4.3e-09  Score=92.60  Aligned_cols=38  Identities=32%  Similarity=0.294  Sum_probs=35.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      +|||||||||.+||+||.++++.|++|+|+|+.+..|.
T Consensus         3 dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~~   40 (235)
T d1h6va1           3 DFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPL   40 (235)
T ss_dssp             SEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCTT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence            69999999999999999999999999999999876554

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.71  E-value=3.8e-09  Score=96.96  Aligned_cols=43  Identities=16%  Similarity=0.314  Sum_probs=37.0

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (416)
Q Consensus        18 ~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (416)
                      |...+|||||||+|++||+||+.++++| +|+||||.+..||.+
T Consensus         3 ~p~~~~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~~gG~s   45 (305)
T d1chua2           3 LPEHSCDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTEGST   45 (305)
T ss_dssp             CCSEECSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCTTC---
T ss_pred             CCcccCCEEEECccHHHHHHHHHhhcCC-CEEEEECCCCCCCch
Confidence            4566899999999999999999999988 999999999888764

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.70  E-value=4.9e-09  Score=88.50  Aligned_cols=40  Identities=15%  Similarity=0.405  Sum_probs=36.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      .|||||||||.+||.||.++++.|.+|+|+|++  +||.+..
T Consensus         1 ~yDViIIGgGpaGl~AAi~aar~G~~v~iie~~--~gg~~~~   40 (184)
T d1fl2a1           1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGER--FGGQILD   40 (184)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECSS--TTGGGGG
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEEEe--cCCcccc
Confidence            389999999999999999999999999999974  7887763

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.69  E-value=2.2e-09  Score=94.50  Aligned_cols=41  Identities=17%  Similarity=0.167  Sum_probs=38.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCC-------CeEEEEccCCCCCCcccc
Q 014883           23 FDLIVIGTGLPESVISAAASASG-------KSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G-------~~V~vlE~~~~~GG~~~s   63 (416)
                      ++|+|||||++||+||.+|+++|       ++|+|+||++++||.++.
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~   50 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRS   50 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHH
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeee
Confidence            68999999999999999999999       589999999999997753

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=4.2e-09  Score=91.71  Aligned_cols=42  Identities=19%  Similarity=0.287  Sum_probs=37.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      .+|||||||||.+||+||.++++.|++|+|+|+ +.+||.|..
T Consensus         2 ~~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk-~~~GG~c~n   43 (221)
T d3grsa1           2 ASYDYLVIGGGSGGLASARRAAELGARAAVVES-HKLGGTCVN   43 (221)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHHHH
T ss_pred             CccCEEEECCCHHHHHHHHHHHHCCCEEEEEec-cCCCCcccc
Confidence            369999999999999999999999999999998 577876643

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.66  E-value=7.7e-09  Score=92.68  Aligned_cols=46  Identities=33%  Similarity=0.435  Sum_probs=42.1

Q ss_pred             CCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883           17 PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (416)
Q Consensus        17 ~~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (416)
                      ...+.+||+||||||.+|+.||..|++.|.+|+++|+++++||.|.
T Consensus        37 ~~~~k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c~   82 (261)
T d1mo9a1          37 ENDPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCP   82 (261)
T ss_dssp             TTCCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHH
T ss_pred             CCCCccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccccccc
Confidence            3445689999999999999999999999999999999999999874

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.66  E-value=1e-08  Score=91.52  Aligned_cols=39  Identities=18%  Similarity=0.139  Sum_probs=35.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      +..+|+|||||++||+||..|+++|++|+||||++.++.
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~   41 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLS   41 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCC
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence            446899999999999999999999999999999987653

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.65  E-value=6e-09  Score=90.67  Aligned_cols=41  Identities=20%  Similarity=0.258  Sum_probs=36.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      +|||||||||.+||+||.++++.|++|+|+|+. .+||.|..
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~-~~GG~~~~   43 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVCLN   43 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEecC-CCCcceec
Confidence            699999999999999999999999999999996 56776644

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.65  E-value=8.7e-09  Score=89.44  Aligned_cols=39  Identities=15%  Similarity=0.212  Sum_probs=34.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccC-CCCCCc
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPN-PFYGSH   60 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~-~~~GG~   60 (416)
                      .|||||||||++|+.||.++||+|.+|+++|++ +.+|+.
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~   41 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMP   41 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCC
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhccc
Confidence            599999999999999999999999999999988 444433

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.64  E-value=8.3e-09  Score=94.95  Aligned_cols=42  Identities=14%  Similarity=0.125  Sum_probs=39.3

Q ss_pred             cccEEEECCChhHHHHHHHHhh--CCCeEEEEccCCCCCCcccc
Q 014883           22 AFDLIVIGTGLPESVISAAASA--SGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~--~G~~V~vlE~~~~~GG~~~s   63 (416)
                      ++||+|||+|++||+||..|++  +|++|+|+|+++++||.++.
T Consensus        50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (311)
T d2gjca1          50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWL   93 (311)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcceeEe
Confidence            6899999999999999999996  49999999999999998865

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.63  E-value=1.2e-08  Score=94.81  Aligned_cols=44  Identities=23%  Similarity=0.258  Sum_probs=38.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCC--CeEEEEccCCCCCCcccc
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G--~~V~vlE~~~~~GG~~~s   63 (416)
                      +....|+|||||++||+||..|+++|  ++|+|+||++.+||.+..
T Consensus         2 ~~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~   47 (335)
T d2gv8a1           2 PTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNY   47 (335)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSC
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccc
Confidence            34458999999999999999998877  699999999999998764

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.63  E-value=7.5e-09  Score=92.65  Aligned_cols=40  Identities=25%  Similarity=0.344  Sum_probs=37.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      ||+||||||.+|+.||.++++.|++|+++|++ .+||.|..
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~-~~GGtc~n   41 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKS-RLGGTCVN   41 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-STTHHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEecC-CCCCeEEe
Confidence            89999999999999999999999999999985 68998753

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.62  E-value=9.1e-09  Score=87.61  Aligned_cols=43  Identities=14%  Similarity=0.226  Sum_probs=38.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCe-EEEEccCCCCCCccccc
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKS-VLHLDPNPFYGSHFSSL   64 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~-V~vlE~~~~~GG~~~s~   64 (416)
                      ...|+|||||++||+||..|+++|++ |+|+|++++.||..+..
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~~~   47 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSE   47 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHT
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhhhh
Confidence            35899999999999999999999985 99999999999976544

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=98.62  E-value=5.7e-09  Score=96.90  Aligned_cols=44  Identities=27%  Similarity=0.250  Sum_probs=39.6

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (416)
Q Consensus        18 ~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (416)
                      ++..+|||||||+|++||+||..++++|++|+|+||.+..||.+
T Consensus         3 ~~~~~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~~gg~s   46 (330)
T d1neka2           3 LPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHT   46 (330)
T ss_dssp             CCEEEESCEEECCSHHHHHHHHHHHHTTCCCEEECSSCGGGSGG
T ss_pred             CCcccCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCCCCCcH
Confidence            34568999999999999999999999999999999998888753

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=98.59  E-value=1.5e-08  Score=95.26  Aligned_cols=35  Identities=17%  Similarity=0.252  Sum_probs=33.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (416)
                      -+++||||||+|.+|+++|.+|+++|++|+|||+.
T Consensus         5 ~~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   39 (370)
T d3coxa1           5 GDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMG   39 (370)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            45799999999999999999999999999999994

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.59  E-value=1.6e-08  Score=90.91  Aligned_cols=44  Identities=18%  Similarity=0.255  Sum_probs=38.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEEccCCCCCCcccccCh
Q 014883           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFYGSHFSSLSI   66 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~-~V~vlE~~~~~GG~~~s~~~   66 (416)
                      +||+|||||++||++|..|+++|. +|+|+||++.++.......+
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g~~i~l   46 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINI   46 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCceEEEE
Confidence            599999999999999999999995 99999999998865555443

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.58  E-value=9.6e-09  Score=89.44  Aligned_cols=42  Identities=19%  Similarity=0.240  Sum_probs=37.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      .+||+||||||.+||.||..+++.|++|+|+|++ .+||.|..
T Consensus         4 ~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~-~~GG~c~~   45 (220)
T d1lvla1           4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ-ALGGTCLN   45 (220)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS-CTTHHHHH
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCCCcccc
Confidence            3699999999999999999999999999999986 68987643

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.58  E-value=1.2e-08  Score=89.41  Aligned_cols=41  Identities=10%  Similarity=-0.059  Sum_probs=37.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCCCCcccc
Q 014883           23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~GG~~~s   63 (416)
                      ..|+|||||++||+||.+|+++  |++|+|+|+++++||.++.
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~   44 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRF   44 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHH
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehh
Confidence            3799999999999999999886  7899999999999997654

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.55  E-value=3.7e-08  Score=91.92  Aligned_cols=41  Identities=20%  Similarity=0.230  Sum_probs=36.7

Q ss_pred             cccEEEECCChhHHHHHHHHhh----CCCeEEEEccCCCCCCccc
Q 014883           22 AFDLIVIGTGLPESVISAAASA----SGKSVLHLDPNPFYGSHFS   62 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~----~G~~V~vlE~~~~~GG~~~   62 (416)
                      ++||||||+|++||+||+.|++    +|++|+||||....||.+.
T Consensus        21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~gg~s~   65 (356)
T d1jnra2          21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAV   65 (356)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTCSTT
T ss_pred             ecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCCChhH
Confidence            6899999999999999999975    7999999999988877653

>d1vg0a2 d.16.1.6 (A:445-557) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GDI-like
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.54  E-value=6.4e-08  Score=73.98  Aligned_cols=53  Identities=19%  Similarity=0.267  Sum_probs=41.2

Q ss_pred             cceEEEEEEEecCCCCCCCC--ceEEEeCCCCCCCCCCCeEEEEEecCCCccCCCCC
Q 014883          362 KGKVARGICITRSSLKPDLS--NFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGM  416 (416)
Q Consensus       362 ~~~~~k~i~i~~~p~~~~~~--~~~~~~pp~~~~~~~~~~v~~~~~~~~~~~~p~G~  416 (416)
                      +.+|+|+|+|+++|+.+..+  ++.+++||...+  ..++|||+++|+++++||+|+
T Consensus         2 ~~~V~RaI~I~d~si~~~~~~~~v~ii~~p~~~~--~~~~v~vl~~ss~~~vCP~G~   56 (113)
T d1vg0a2           2 YRQISRAVLITDGSVLRTDADQQVSILTVPAEEP--GSFAVRVIELCSSTMTCMKGT   56 (113)
T ss_dssp             CEEEEEEEEEESSCSSCCSCCCCCEEEEECCSST--TSCCEEEEEECGGGTSSCTTC
T ss_pred             cEEEEEEEEEECCCCCCCCCCccEEEeecCcccC--CCCCEEEEEecCCcccCCCCC
Confidence            46799999999999865443  455555544433  368999999999999999996

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.51  E-value=2.6e-08  Score=84.53  Aligned_cols=45  Identities=11%  Similarity=0.108  Sum_probs=38.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccC
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS   65 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~   65 (416)
                      .+.||+|||||.+||.||.+|+|.|.+|+|+|++++-|.+..+-.
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~~~~~   48 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTE   48 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSB
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccccccch
Confidence            357999999999999999999999999999999877565555433

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=98.51  E-value=2.8e-08  Score=92.47  Aligned_cols=46  Identities=15%  Similarity=0.215  Sum_probs=38.4

Q ss_pred             CcccEEEECCChhHHHHHHHHh-----hCCCeEEEEccCCCC--CCcccccCh
Q 014883           21 TAFDLIVIGTGLPESVISAAAS-----ASGKSVLHLDPNPFY--GSHFSSLSI   66 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La-----~~G~~V~vlE~~~~~--GG~~~s~~~   66 (416)
                      +.|||+|||||++||++|..|+     ++|++|+||||++.+  .|+..++..
T Consensus         6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~~~~r~~~l~~   58 (360)
T d1pn0a1           6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQC   58 (360)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEECH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCCcCCeEEEECH
Confidence            4699999999999999999996     689999999998766  455555543

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=98.50  E-value=3.4e-08  Score=92.69  Aligned_cols=32  Identities=28%  Similarity=0.393  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (416)
                      +||||||+|++|+++|.+|+++|++|+|||+.
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   34 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMG   34 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecC
Confidence            69999999999999999999999999999994

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=98.48  E-value=4.4e-08  Score=91.87  Aligned_cols=35  Identities=31%  Similarity=0.522  Sum_probs=32.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      +.||+||||+|.+|+++|.+|+++|++|+|||+..
T Consensus         1 t~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~   35 (360)
T d1kdga1           1 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGG   35 (360)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CcCCEEEECcCHHHHHHHHHHhhCCCeEEEEEccC
Confidence            46999999999999999999999999999999953

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.46  E-value=3.5e-08  Score=86.95  Aligned_cols=37  Identities=30%  Similarity=0.315  Sum_probs=33.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCC-CeEEEEccCCCC
Q 014883           21 TAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFY   57 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G-~~V~vlE~~~~~   57 (416)
                      .+|||||||+|.+|++||.++++.| ++|+|+|+....
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~~   39 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHH   39 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEeccC
Confidence            4799999999999999999999998 569999998763

>d1d5ta2 d.16.1.6 (A:292-388) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GDI-like
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.46  E-value=1.4e-07  Score=67.68  Aligned_cols=53  Identities=26%  Similarity=0.369  Sum_probs=47.8

Q ss_pred             cceEEEEEEEecCCCC--CCCCceEEEeCCCCCCCCCCCeEEEEEecCCCccCCCCC
Q 014883          362 KGKVARGICITRSSLK--PDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGM  416 (416)
Q Consensus       362 ~~~~~k~i~i~~~p~~--~~~~~~~~~~pp~~~~~~~~~~v~~~~~~~~~~~~p~G~  416 (416)
                      .|+++|+|||.+.|..  ++.+++++++|..+.+.  .++|||..+++.+.+||+||
T Consensus         3 ~G~ViRaICIl~hPIpnt~~a~S~QIIiPq~Qv~R--k~DIYv~~~S~~h~V~~kg~   57 (97)
T d1d5ta2           3 AGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNR--KSDIYVCMISYAHNVAAQGK   57 (97)
T ss_dssp             EEEEEEEEEEESSCCTTSTTCSSEEEEECGGGTTC--SSCEEEEEEEGGGTSSCTTC
T ss_pred             ccEEEEEEEEecCCcCCCCCCccEEEEeehHHhcc--CCCEEEEEeccccccCCCCe
Confidence            5889999999999996  46688999999888776  58999999999999999997

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.46  E-value=4.4e-08  Score=88.78  Aligned_cols=35  Identities=14%  Similarity=0.226  Sum_probs=33.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      ++||+|||||++||++|..|+++|++|+||||++.
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~   36 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            46999999999999999999999999999999874

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.42  E-value=6.6e-08  Score=84.65  Aligned_cols=34  Identities=32%  Similarity=0.343  Sum_probs=30.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC-eEEEEccC
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGK-SVLHLDPN   54 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~-~V~vlE~~   54 (416)
                      ..|||||||||.+||+||.++++.|. +|+|+|+.
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~   36 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQ   36 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESC
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEee
Confidence            46999999999999999999999885 68888875

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.40  E-value=6.6e-08  Score=82.19  Aligned_cols=38  Identities=13%  Similarity=0.097  Sum_probs=34.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (416)
                      ...+||+|||||.+||.||.+|+|+|.+|+|+|+....
T Consensus         3 ~~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~   40 (192)
T d1vdca1           3 THNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMAN   40 (192)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBT
T ss_pred             cccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeeccc
Confidence            34689999999999999999999999999999987764

>d2bcgg3 d.16.1.6 (G:302-399) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GDI-like
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.40  E-value=2.6e-07  Score=66.36  Aligned_cols=53  Identities=26%  Similarity=0.464  Sum_probs=47.2

Q ss_pred             cce-EEEEEEEecCCCC--CCCCceEEEeCCCCCCCCCCCeEEEEEecCCCccCCCCC
Q 014883          362 KGK-VARGICITRSSLK--PDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGM  416 (416)
Q Consensus       362 ~~~-~~k~i~i~~~p~~--~~~~~~~~~~pp~~~~~~~~~~v~~~~~~~~~~~~p~G~  416 (416)
                      .|+ |+|+|||.+.|..  ++.+++++++|..+.+.  .++|||..+++.+.+||+||
T Consensus         3 ~GqkViRaICIl~hPipnt~~a~S~QIIiPq~Qv~R--k~DIYv~~~S~~h~V~~kg~   58 (98)
T d2bcgg3           3 TGQRVIRAICILNHPVPNTSNADSLQIIIPQSQLGR--KSDIYVAIVSDAHNVCSKGH   58 (98)
T ss_dssp             EEEEEEEEEEEESSCCTTSTTCSSEEEEECGGGTTC--SSCEEEEEEEGGGTSSCTTC
T ss_pred             ccceEEEEEEEecCCcCCCCCCceEEEEEehHHhCC--CcCEEEEEeccccccCCCCc
Confidence            475 9999999999986  46688999999888776  58999999999999999997

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=98.29  E-value=2.3e-07  Score=87.72  Aligned_cols=37  Identities=24%  Similarity=0.383  Sum_probs=33.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCC-CeEEEEccCCC
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPF   56 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G-~~V~vlE~~~~   56 (416)
                      ..+||+||||||.+|+++|.+|+++| ++|+|||+...
T Consensus        15 ~~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~   52 (385)
T d1cf3a1          15 GRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSY   52 (385)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCC
T ss_pred             CCeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence            34699999999999999999999987 89999999643

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=98.29  E-value=2.2e-07  Score=87.96  Aligned_cols=36  Identities=22%  Similarity=0.426  Sum_probs=33.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCC-CeEEEEccCCC
Q 014883           21 TAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPF   56 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G-~~V~vlE~~~~   56 (416)
                      ++||+||||||.+|+++|.+|+++| ++|+|||+...
T Consensus        23 ~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~   59 (391)
T d1gpea1          23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY   59 (391)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred             CeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCC
Confidence            4699999999999999999999998 79999999864

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=98.29  E-value=1.6e-07  Score=86.03  Aligned_cols=40  Identities=20%  Similarity=0.179  Sum_probs=36.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCCCCcc
Q 014883           22 AFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHF   61 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~GG~~   61 (416)
                      ++||||||+|++||+||..++++  |.+|+|+||....||.+
T Consensus         5 ~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~~g~s   46 (311)
T d1kf6a2           5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHT   46 (311)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGG
T ss_pred             ecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCCCCcH
Confidence            68999999999999999999986  77999999998877753

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=98.18  E-value=3.7e-07  Score=85.09  Aligned_cols=36  Identities=22%  Similarity=0.415  Sum_probs=32.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (416)
                      ..||+||||+|.+|+++|.+|+++ ++|+|||+.+..
T Consensus        25 ~~YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~~~   60 (351)
T d1ju2a1          25 GSYDYVIVGGGTSGCPLAATLSEK-YKVLVLERGSLP   60 (351)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTTT-SCEEEECSSBCG
T ss_pred             CCccEEEECccHHHHHHHHHhcCC-CCEEEEecCCCC
Confidence            369999999999999999999987 999999998643

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.94  E-value=3.7e-07  Score=79.85  Aligned_cols=35  Identities=23%  Similarity=0.246  Sum_probs=31.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (416)
                      .|+|||||+.||++|+.|+++|++|+|+|+.+.++
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~   36 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYA   36 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEE
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEEeeeeecc
Confidence            59999999999999999999999999999865554

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.92  E-value=1.8e-06  Score=75.30  Aligned_cols=40  Identities=18%  Similarity=0.151  Sum_probs=33.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCC---CeEEEEccCCCCCCcccc
Q 014883           23 FDLIVIGTGLPESVISAAASASG---KSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G---~~V~vlE~~~~~GG~~~s   63 (416)
                      .+|||||+|.+|++||.++++.|   ++|+++|+ +.+||.|..
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk-~~~GG~cln   44 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDC-DGIGGAAVL   44 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEES-SCTTHHHHH
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEec-CCCCceeec
Confidence            48999999999999999887765   68999998 578886653

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.90  E-value=7.7e-06  Score=63.03  Aligned_cols=38  Identities=26%  Similarity=0.181  Sum_probs=35.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (416)
                      -+++|||||+.|+-+|..|++.|.+|+++|+++++...
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~   60 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG   60 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT
T ss_pred             CeEEEECCCccceeeeeeecccccEEEEEEecceeccc
Confidence            47999999999999999999999999999999998754

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.84  E-value=8.9e-06  Score=63.28  Aligned_cols=41  Identities=22%  Similarity=0.194  Sum_probs=36.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      ..|+|||||+.|+-+|..|++.|++|+++|+.+++-++...
T Consensus        31 k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~~d   71 (123)
T d1nhpa2          31 NNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLD   71 (123)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCC
T ss_pred             CEEEEECChHHHHHHHHHhhccceEEEEEEecCcccccccc
Confidence            48999999999999999999999999999999998665433

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.82  E-value=1e-05  Score=62.67  Aligned_cols=41  Identities=22%  Similarity=0.323  Sum_probs=37.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      ..++|||||+.|+-+|..|++.|++|+++|+++++-.+...
T Consensus        31 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~~~   71 (121)
T d1d7ya2          31 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAP   71 (121)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSC
T ss_pred             CeEEEECcchhHHHHHHHhhcccceEEEEeeccccccccCC
Confidence            57999999999999999999999999999999998765433

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.81  E-value=1.1e-05  Score=63.78  Aligned_cols=41  Identities=24%  Similarity=0.221  Sum_probs=37.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s   63 (416)
                      ..++|||||+.|+-+|..|++.|++|+++|+++++..+...
T Consensus        36 k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~~~   76 (133)
T d1q1ra2          36 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTA   76 (133)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSC
T ss_pred             CEEEEECCchHHHHHHHHHHhhCcceeeeeecccccccccc
Confidence            58999999999999999999999999999999998766543

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.81  E-value=8.5e-06  Score=63.31  Aligned_cols=37  Identities=16%  Similarity=0.259  Sum_probs=34.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      .+++|||||+.|+-+|..|++.|++|+++|+++++-+
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~   69 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG   69 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT
T ss_pred             CcEEEECCcHHHHHHHHHhhcccceEEEEeccccccC
Confidence            3699999999999999999999999999999999864

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=97.81  E-value=1.2e-05  Score=61.92  Aligned_cols=38  Identities=11%  Similarity=0.042  Sum_probs=35.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (416)
                      ..++|||||+.|+-+|..|++.|.+|+++|+.+++...
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~   59 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS   59 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT
T ss_pred             CEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhh
Confidence            36999999999999999999999999999999998754

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.78  E-value=9.1e-06  Score=62.41  Aligned_cols=37  Identities=19%  Similarity=0.188  Sum_probs=34.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (416)
                      .++|||||+.|+-+|..|++.|++|+++|+.+++.-.
T Consensus        23 ~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~~   59 (115)
T d1lvla2          23 HLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT   59 (115)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT
T ss_pred             eEEEECCCHHHHHHHHHHhhcccceEEEeeecccccc
Confidence            7999999999999999999999999999999998643

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.72  E-value=1.6e-05  Score=61.24  Aligned_cols=36  Identities=8%  Similarity=0.022  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (416)
                      ..|+|||||+.|+-+|..|++.|.+|+++|+.+++-
T Consensus        23 ~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il   58 (117)
T d1onfa2          23 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRIL   58 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSC
T ss_pred             CEEEEECCchHHHHHHHHHHhccccceeeehhcccc
Confidence            479999999999999999999999999999999985

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=97.66  E-value=2.9e-05  Score=60.44  Aligned_cols=39  Identities=15%  Similarity=0.071  Sum_probs=36.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (416)
                      -.++|||||+.|+=.|..|++.|.+|+++|+.+++-...
T Consensus        27 ~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~~   65 (125)
T d1ojta2          27 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGA   65 (125)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTS
T ss_pred             CeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccccccc
Confidence            379999999999999999999999999999999987653

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=3.8e-05  Score=59.71  Aligned_cols=37  Identities=14%  Similarity=0.065  Sum_probs=34.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      ..++|||||+.|+-+|..|++.|.+|+++|+++++-.
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~   59 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLR   59 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeecccccc
Confidence            4799999999999999999999999999999999853

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.57  E-value=4.3e-05  Score=58.86  Aligned_cols=38  Identities=21%  Similarity=0.153  Sum_probs=35.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (416)
                      -+++|||||+.|+-.|..|++.|.+|+++|+++++--.
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~   60 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPA   60 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT
T ss_pred             CeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCCc
Confidence            47999999999999999999999999999999998543

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.56  E-value=4.9e-05  Score=58.78  Aligned_cols=38  Identities=24%  Similarity=0.316  Sum_probs=35.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (416)
                      -.++|||||..|+-.|..|++.|.+|+++|+++++-..
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~   61 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS   61 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS
T ss_pred             CeEEEECCCchHHHHHHHHHhhCcceeEEEeccccchh
Confidence            37999999999999999999999999999999999754

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=97.52  E-value=2.7e-05  Score=64.10  Aligned_cols=41  Identities=20%  Similarity=0.300  Sum_probs=35.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC--eEEEEccCCCCCCcccc
Q 014883           23 FDLIVIGTGLPESVISAAASASGK--SVLHLDPNPFYGSHFSS   63 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~--~V~vlE~~~~~GG~~~s   63 (416)
                      ..|||||||++|+.+|..|++.|.  +|+++|+++++.+....
T Consensus         3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~   45 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLS   45 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTH
T ss_pred             CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCcccccccc
Confidence            379999999999999999999984  89999999987665544

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.44  E-value=4.3e-05  Score=59.22  Aligned_cols=38  Identities=18%  Similarity=0.148  Sum_probs=35.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (416)
                      -.++|||||+.||-.|..|++.|.+|+|+|+++++-..
T Consensus        26 ~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~~   63 (123)
T d1dxla2          26 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT   63 (123)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT
T ss_pred             CeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCch
Confidence            37999999999999999999999999999999998643

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.31  E-value=9.6e-05  Score=54.08  Aligned_cols=34  Identities=21%  Similarity=0.196  Sum_probs=31.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      ..|+|+|.|.+|+++|.+|++.|.+|++.|.+..
T Consensus         6 K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~   39 (93)
T d2jfga1           6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT   39 (93)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence            4699999999999999999999999999999765

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.30  E-value=9.4e-05  Score=61.10  Aligned_cols=40  Identities=18%  Similarity=0.057  Sum_probs=35.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (416)
                      -||||||||.+|+-+|..|++.|++|+|++..++......
T Consensus         4 ~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~   43 (185)
T d1q1ra1           4 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHH   43 (185)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBC
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccchh
Confidence            4899999999999999999999999999999887655444

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=97.27  E-value=0.00015  Score=55.72  Aligned_cols=36  Identities=14%  Similarity=0.140  Sum_probs=34.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (416)
                      ..++|||+|+.|+-.|..|++.|.+|+++|+++++.
T Consensus        23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l   58 (121)
T d1mo9a2          23 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK   58 (121)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhcchhheEeeccchhh
Confidence            489999999999999999999999999999999886

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.0001  Score=62.85  Aligned_cols=38  Identities=21%  Similarity=0.360  Sum_probs=33.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCC--eEEEEccCCCC
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGK--SVLHLDPNPFY   57 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~--~V~vlE~~~~~   57 (416)
                      ++++++||||||++|+.+|..|++.|+  +|+++++..++
T Consensus         2 p~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~   41 (213)
T d1m6ia1           2 PSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL   41 (213)
T ss_dssp             CSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSC
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCC
Confidence            568999999999999999999999886  59999887654

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.23  E-value=0.00017  Score=55.61  Aligned_cols=34  Identities=12%  Similarity=0.115  Sum_probs=31.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (416)
                      .++|||||..|+-.|..|++.|.+|++++++...
T Consensus        22 ~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~~l   55 (122)
T d1h6va2          22 KTLVVGASYVALECAGFLAGIGLDVTVMVRSILL   55 (122)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             eEEEECCCccHHHHHHHHhhcCCeEEEEEechhh
Confidence            7999999999999999999999999999976444

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.16  E-value=0.00016  Score=59.35  Aligned_cols=34  Identities=15%  Similarity=0.120  Sum_probs=31.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      ..|+|||||..|..+|..|+++|++|+|+|++..
T Consensus         3 K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~   36 (182)
T d1e5qa1           3 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLE   36 (182)
T ss_dssp             CEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECChH
Confidence            4799999999999999999999999999999755

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.14  E-value=0.00017  Score=58.51  Aligned_cols=34  Identities=18%  Similarity=0.252  Sum_probs=30.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (416)
                      .|+|||||++|+-+|..|++ +.+|+|+|+++++.
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~   35 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPY   35 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCC
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEecccccc
Confidence            58999999999999999976 78999999988654

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.13  E-value=0.00067  Score=51.64  Aligned_cols=53  Identities=15%  Similarity=0.246  Sum_probs=45.4

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (416)
                      .++++.+.+..++.|.++++|+.|++|+.+. ++. ..|++++|+++.||.||..
T Consensus        64 ~~~~~~l~~~l~~~GV~v~~~~~v~~ie~~~-~~~-~~v~~~~G~~i~~D~Vi~A  116 (117)
T d1aoga2          64 HTLREELTKQLTANGIQILTKENPAKVELNA-DGS-KSVTFESGKKMDFDLVMMA  116 (117)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEECT-TSC-EEEEETTSCEEEESEEEEC
T ss_pred             hHHHHHHHHHHHhcCcEEEcCCEEEEEEEcC-CCe-EEEEECCCcEEEeCEEEEe
Confidence            5788888899999999999999999998752 554 4688999999999999853

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.11  E-value=0.00079  Score=52.52  Aligned_cols=54  Identities=7%  Similarity=0.038  Sum_probs=45.8

Q ss_pred             hHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (416)
Q Consensus       280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (416)
                      .+.+.+.+..++.|.++++|+.|++|....+++++..|.+++|+++.||.||+.
T Consensus        78 ~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a  131 (133)
T d1q1ra2          78 PVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAG  131 (133)
T ss_dssp             HHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEEC
T ss_pred             hhhhhhhhcccccccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEe
Confidence            566777787889999999999999998864466677899999999999999954

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.04  E-value=0.00021  Score=59.84  Aligned_cols=34  Identities=12%  Similarity=0.140  Sum_probs=31.0

Q ss_pred             cEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCC
Q 014883           24 DLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFY   57 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~   57 (416)
                      .|+|||||.+|+.+|..|++.  +.+|+++|+++++
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~   37 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI   37 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcc
Confidence            699999999999999999997  4589999998876

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.94  E-value=0.00036  Score=57.47  Aligned_cols=33  Identities=27%  Similarity=0.309  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ..+.|||+|..|+..|..|+++|++|.++++++
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~   34 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   34 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            368999999999999999999999999999864

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.89  E-value=0.00018  Score=59.48  Aligned_cols=39  Identities=18%  Similarity=0.174  Sum_probs=34.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (416)
                      ..|+|||||++|+-+|..|++.|.+|.+++..++.....
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~   42 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPY   42 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCB
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccch
Confidence            469999999999999999999999999998877765443

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=96.87  E-value=0.0015  Score=49.60  Aligned_cols=53  Identities=15%  Similarity=0.194  Sum_probs=45.2

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (416)
                      .++++.+.+..++.|.++++|+.|++|..+. ++. ..|.+++|+++.||.||+.
T Consensus        62 ~~~~~~~~~~l~~~GI~v~~~~~v~~i~~~~-~g~-~~v~~~~g~~i~~D~Vi~a  114 (117)
T d1feca2          62 SELRKQLTEQLRANGINVRTHENPAKVTKNA-DGT-RHVVFESGAEADYDVVMLA  114 (117)
T ss_dssp             HHHHHHHHHHHHHTTEEEEETCCEEEEEECT-TSC-EEEEETTSCEEEESEEEEC
T ss_pred             chhhHHHHHHHhhCcEEEEcCCEEEEEEECC-CCE-EEEEECCCCEEEcCEEEEe
Confidence            4688888888999999999999999998762 454 5788899999999999954

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=96.86  E-value=0.00055  Score=52.15  Aligned_cols=36  Identities=8%  Similarity=0.043  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHh---hCCCeEEEEccCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAAS---ASGKSVLHLDPNPFYG   58 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La---~~G~~V~vlE~~~~~G   58 (416)
                      ..++|||||+.|+-+|..|+   ++|.+|+++|+.+++-
T Consensus        21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL   59 (117)
T d1aoga2          21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL   59 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS
T ss_pred             CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh
Confidence            47999999999999997655   4567899999999874

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.0019  Score=50.55  Aligned_cols=52  Identities=17%  Similarity=0.171  Sum_probs=43.7

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (416)
                      .++++.+.+.+++.|.++++|+.|++|..+  +++ +.|++++|+++.||.||..
T Consensus        83 ~~~~~~~~~~l~~~GV~~~~~~~V~~i~~~--~~~-~~v~l~~G~~i~aD~Vi~A  134 (137)
T d1m6ia2          83 EYLSNWTMEKVRREGVKVMPNAIVQSVGVS--SGK-LLIKLKDGRKVETDHIVAA  134 (137)
T ss_dssp             HHHHHHHHHHHHTTTCEEECSCCEEEEEEE--TTE-EEEEETTSCEEEESEEEEC
T ss_pred             HHHHHHHHHHHHhCCcEEEeCCEEEEEEec--CCE-EEEEECCCCEEECCEEEEe
Confidence            356777778889999999999999999876  554 4688999999999999954

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=96.81  E-value=0.0016  Score=49.35  Aligned_cols=53  Identities=11%  Similarity=0.137  Sum_probs=44.7

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (416)
                      .++++.+.+..++.|.++++++.|++|..+. ++. +.|++++|+++.+|.||+.
T Consensus        62 ~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~-~~~-~~v~~~~g~~~~~D~vi~a  114 (116)
T d1gesa2          62 PMISETLVEVMNAEGPQLHTNAIPKAVVKNT-DGS-LTLELEDGRSETVDCLIWA  114 (116)
T ss_dssp             HHHHHHHHHHHHHHSCEEECSCCEEEEEECT-TSC-EEEEETTSCEEEESEEEEC
T ss_pred             hhhHHHHHHHHHHCCCEEEeCCEEEEEEEcC-CcE-EEEEECCCCEEEcCEEEEe
Confidence            4688888888899999999999999998762 444 4688899999999999953

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.75  E-value=0.0007  Score=54.69  Aligned_cols=33  Identities=21%  Similarity=0.225  Sum_probs=31.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      .|.|||+|--|...|..|+++|++|+++.+++.
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~   34 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence            699999999999999999999999999998765

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.00073  Score=52.99  Aligned_cols=40  Identities=23%  Similarity=0.273  Sum_probs=34.5

Q ss_pred             ccEEEECCChhHHHHHHHHhh----CCCeEEEEccCCCCCCccc
Q 014883           23 FDLIVIGTGLPESVISAAASA----SGKSVLHLDPNPFYGSHFS   62 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~----~G~~V~vlE~~~~~GG~~~   62 (416)
                      ..++|||||+.|+-+|..|++    .|.+|+++|+++++.++..
T Consensus        38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~~   81 (137)
T d1m6ia2          38 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKIL   81 (137)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTS
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcccC
Confidence            379999999999999998864    5999999999999876543

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.72  E-value=0.00077  Score=54.02  Aligned_cols=42  Identities=10%  Similarity=0.142  Sum_probs=35.6

Q ss_pred             cEEEE--CCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccC
Q 014883           24 DLIVI--GTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS   65 (416)
Q Consensus        24 DViII--GaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~   65 (416)
                      .||||  |+|..|+.+|..|++.|.+|+++|+.++++-......
T Consensus        41 ~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~~~~~~   84 (156)
T d1djqa2          41 RVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMHFTLE   84 (156)
T ss_dssp             EEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHHHHTTC
T ss_pred             ceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccccccchhH
Confidence            45665  9999999999999999999999999999876554443

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.68  E-value=0.00068  Score=57.01  Aligned_cols=32  Identities=25%  Similarity=0.428  Sum_probs=30.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      .|.|||.|.-||..|..||++|++|..+|.+.
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~   33 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence            58999999999999999999999999999874

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=96.66  E-value=0.00094  Score=50.73  Aligned_cols=37  Identities=14%  Similarity=0.038  Sum_probs=31.7

Q ss_pred             ccEEEECCChhHHHHHHHHh---hCCCeEEEEccCCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAAS---ASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La---~~G~~V~vlE~~~~~GG   59 (416)
                      ..++|||||+.|+-+|..|+   +.|.+|+++|+.+++.-
T Consensus        19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~   58 (117)
T d1feca2          19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILR   58 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSST
T ss_pred             CeEEEECCChHHHHHHHHhHhhcccccccceecccccccc
Confidence            37999999999999997654   45999999999998863

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=96.58  E-value=0.0014  Score=52.15  Aligned_cols=41  Identities=20%  Similarity=0.360  Sum_probs=35.3

Q ss_pred             CCCCCCCcccEEEEC-CChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           15 YPPIEPTAFDLIVIG-TGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        15 ~~~~~~~~~DViIIG-aGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      |..+.+....|.||| .|.-|...|..|+++|++|.+++++.
T Consensus         2 ~~~~~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~   43 (152)
T d2pv7a2           2 FKTINSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDRED   43 (152)
T ss_dssp             CCCSCTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CcccCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence            344556667899999 79999999999999999999999864

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.47  E-value=0.0014  Score=50.97  Aligned_cols=32  Identities=19%  Similarity=0.367  Sum_probs=30.5

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      .|+|+|+|--|...|..|.+.|++|+++|++.
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~   33 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   33 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCCh
Confidence            69999999999999999999999999999964

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.36  E-value=0.0019  Score=53.71  Aligned_cols=34  Identities=32%  Similarity=0.419  Sum_probs=31.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      -.|.|||||..|..-|..++++|++|+++|.++.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED   38 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            4799999999999999999999999999998753

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.31  E-value=0.0055  Score=46.68  Aligned_cols=53  Identities=17%  Similarity=0.228  Sum_probs=43.1

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCC-----cEEEcCEEEE
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG-----QDILSHKLVL  332 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G-----~~i~Ad~VI~  332 (416)
                      .++++.+.+..++.|.+|++|+.|++|+.++ ++..+.+++.++     +++.||.||+
T Consensus        64 ~ei~~~l~~~l~~~GV~i~~~~~v~~v~~~~-~~~~v~~~~~~~~~~~~~~ie~D~vlv  121 (122)
T d1v59a2          64 GEVAKATQKFLKKQGLDFKLSTKVISAKRND-DKNVVEIVVEDTKTNKQENLEAEVLLV  121 (122)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSEEEEEEEEET-TTTEEEEEEEETTTTEEEEEEESEEEE
T ss_pred             hhhHHHHHHHHHhccceEEeCCEEEEEEEeC-CCcEEEEEEEeCCCCCeEEEEeCEEEE
Confidence            5788888888999999999999999999873 665666665543     3789999985

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.28  E-value=0.0014  Score=54.32  Aligned_cols=33  Identities=24%  Similarity=0.351  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      -.|.|||||..|...|..++++|++|+++|.++
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINE   37 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            369999999999999999999999999999974

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.25  E-value=0.0021  Score=51.63  Aligned_cols=32  Identities=22%  Similarity=0.313  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (416)
                      ..|+|||+|.+|+.|++.+.+.|-+|.++|.+
T Consensus        33 a~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~   64 (168)
T d1pjca1          33 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDIN   64 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cEEEEECCChHHHHHHHHHhhCCCEEEEEeCc
Confidence            58999999999999999999999999999986

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.17  E-value=0.008  Score=45.33  Aligned_cols=52  Identities=8%  Similarity=0.042  Sum_probs=43.4

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEE-cCEEEE
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDIL-SHKLVL  332 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~-Ad~VI~  332 (416)
                      .++++.+.+..+..|.++++++.|++|+... ++. +.|++++|+++. +|.||.
T Consensus        63 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~-~~~-~~v~~~~G~~~~~~D~Vi~  115 (117)
T d1onfa2          63 ESVINVLENDMKKNNINIVTFADVVEIKKVS-DKN-LSIHLSDGRIYEHFDHVIY  115 (117)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEESS-TTC-EEEEETTSCEEEEESEEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEECCEEEEEEEcC-CCe-EEEEECCCCEEEeCCEEEE
Confidence            5788888888899999999999999998762 454 578889999885 699985

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=96.11  E-value=0.0031  Score=50.31  Aligned_cols=40  Identities=15%  Similarity=0.225  Sum_probs=35.5

Q ss_pred             CCCCCCcccEEEECCChhHHHHHHHHhhCCC-eEEEEccCC
Q 014883           16 PPIEPTAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (416)
Q Consensus        16 ~~~~~~~~DViIIGaGl~GL~aA~~La~~G~-~V~vlE~~~   55 (416)
                      |+++..+..|.|||+|.-|.++|..|+..|. ++.++|.+.
T Consensus         1 ~~~~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~   41 (154)
T d1pzga1           1 PALVQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   41 (154)
T ss_dssp             CCCCSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CccccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEecc
Confidence            5677778999999999999999999999986 799999775

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.09  E-value=0.0029  Score=51.48  Aligned_cols=34  Identities=24%  Similarity=0.276  Sum_probs=31.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      ..|+|||+|.+|+.||....+-|-+|.++|.+..
T Consensus        30 a~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~   63 (183)
T d1l7da1          30 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA   63 (183)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             cEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHH
Confidence            5899999999999999999999999999998753

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.07  E-value=0.0037  Score=49.75  Aligned_cols=35  Identities=23%  Similarity=0.252  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCC-CeEEEEccCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFY   57 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G-~~V~vlE~~~~~   57 (416)
                      -+|||||||-+++=+|..|.+.| .+|+++++++..
T Consensus        46 ~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~   81 (153)
T d1gtea3          46 GAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFV   81 (153)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGG
T ss_pred             CEEEEECCChhHHHHHHHHHHcCCcceeEEEeCChh
Confidence            36999999999999999999998 558899887653

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=95.97  E-value=0.0027  Score=49.15  Aligned_cols=32  Identities=31%  Similarity=0.360  Sum_probs=30.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      .+||||.|--|...|..|.+.|++|+++|++.
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~   33 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   33 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEecCcH
Confidence            58999999999999999999999999999974

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=95.95  E-value=0.0035  Score=50.50  Aligned_cols=32  Identities=16%  Similarity=0.316  Sum_probs=30.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      .|.|||+|.-|.+.|..|+++|++|.++|++.
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            58999999999999999999999999999874

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.86  E-value=0.013  Score=44.05  Aligned_cols=52  Identities=15%  Similarity=0.144  Sum_probs=40.1

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEe-CCC--cEEEcCEEEEC
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL-ASG--QDILSHKLVLD  333 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l-~~G--~~i~Ad~VI~~  333 (416)
                      .++++.+.+..++.|.++++++.|++|..+  ++.. .|.+ .+|  +++.||.||++
T Consensus        63 ~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~--~~~~-~v~~~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          63 KQMAAIIKKRLKKKGVEVVTNALAKGAEER--EDGV-TVTYEANGETKTIDADYVLVT  117 (117)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESEEEEEEEEE--TTEE-EEEEEETTEEEEEEESEEEEC
T ss_pred             chhHHHHHHHHHhcCCEEEcCCEEEEEEEc--CCEE-EEEEEeCCCEEEEEeEEEEEC
Confidence            468888888889999999999999999876  3332 3433 345  46899999964

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=95.76  E-value=0.0035  Score=51.87  Aligned_cols=36  Identities=17%  Similarity=0.134  Sum_probs=32.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      +.+.+|.|||+|--|.+.|..|+++|++|.++.+++
T Consensus         5 ~~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~   40 (189)
T d1n1ea2           5 LYLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   40 (189)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred             ceeceEEEECCCHHHHHHHHHHHHcCCeEEEEEecH
Confidence            344589999999999999999999999999998753

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=95.66  E-value=0.017  Score=43.73  Aligned_cols=48  Identities=23%  Similarity=0.280  Sum_probs=39.9

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (416)
                      .++++.+.+..++.|.++++++.|+++.    ++   .|+++||+++.||.||+.
T Consensus        72 ~~~~~~~~~~l~~~GV~i~~~~~v~~~~----~~---~v~l~dg~~i~~D~vi~a  119 (121)
T d1d7ya2          72 ATLADFVARYHAAQGVDLRFERSVTGSV----DG---VVLLDDGTRIAADMVVVG  119 (121)
T ss_dssp             HHHHHHHHHHHHTTTCEEEESCCEEEEE----TT---EEEETTSCEEECSEEEEC
T ss_pred             HHHHHHHHHHHHHCCcEEEeCCEEEEEe----CC---EEEECCCCEEECCEEEEe
Confidence            4677777788889999999999999875    44   366799999999999953

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.36  E-value=0.017  Score=43.89  Aligned_cols=54  Identities=20%  Similarity=0.309  Sum_probs=41.8

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCC-C--cEEEcCEEEEC
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS-G--QDILSHKLVLD  333 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~-G--~~i~Ad~VI~~  333 (416)
                      ..+.+.+.+..++.|.+|++|+.|++|+.+ +++..+.++..+ |  +++.||.|+++
T Consensus        66 ~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~-~~~~~v~~~~~~~g~~~~i~~D~vLvA  122 (123)
T d1dxla2          66 AEIRKQFQRSLEKQGMKFKLKTKVVGVDTS-GDGVKLTVEPSAGGEQTIIEADVVLVS  122 (123)
T ss_dssp             HHHHHHHHHHHHHSSCCEECSEEEEEEECS-SSSEEEEEEESSSCCCEEEEESEEECC
T ss_pred             hcchhhhhhhhhcccceEEcCCceEEEEEc-cCeEEEEEEECCCCeEEEEEcCEEEEc
Confidence            578888889999999999999999999976 355444555443 3  35899999854

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.33  E-value=0.014  Score=44.26  Aligned_cols=51  Identities=10%  Similarity=0.075  Sum_probs=41.0

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (416)
                      .++++.+.+..++.|.++++++.|++|..   ++++..| +.+|+++.||.||+.
T Consensus        72 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~---~~~~~~v-~~dg~~i~~D~vi~a  122 (123)
T d1nhpa2          72 KEFTDVLTEEMEANNITIATGETVERYEG---DGRVQKV-VTDKNAYDADLVVVA  122 (123)
T ss_dssp             HHHHHHHHHHHHTTTEEEEESCCEEEEEC---SSBCCEE-EESSCEEECSEEEEC
T ss_pred             hhhHHHHHHHhhcCCeEEEeCceEEEEEc---CCCEEEE-EeCCCEEECCEEEEE
Confidence            45777777888899999999999999974   4454455 478999999999853

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.33  E-value=0.023  Score=42.82  Aligned_cols=52  Identities=12%  Similarity=0.125  Sum_probs=40.8

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCC---cEEEcCEEEEC
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG---QDILSHKLVLD  333 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G---~~i~Ad~VI~~  333 (416)
                      .++.+.+.+..++.|.++++++.|++|+.+  ++. +.|++.++   +++.||.||++
T Consensus        63 ~ei~~~l~~~l~~~Gv~i~~~~~v~~i~~~--~~~-v~v~~~~~~~~~~~~~D~vlvA  117 (119)
T d3lada2          63 EQVAKEAQKILTKQGLKILLGARVTGTEVK--NKQ-VTVKFVDAEGEKSQAFDKLIVA  117 (119)
T ss_dssp             HHHHHHHHHHHHHTTEEEEETCEEEEEEEC--SSC-EEEEEESSSEEEEEEESEEEEC
T ss_pred             chhHHHHHHHHHhcCceeecCcEEEEEEEe--CCE-EEEEEEECCCCEEEECCEEEEe
Confidence            578888889899999999999999999986  333 34554443   57899999854

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.20  E-value=0.0077  Score=49.87  Aligned_cols=32  Identities=22%  Similarity=0.217  Sum_probs=28.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      .|.|||.|..||..|..|+ .|++|+.+|-+..
T Consensus         2 kI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~   33 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPS   33 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHT-TTSEEEEECSCHH
T ss_pred             EEEEECCChhHHHHHHHHH-CCCcEEEEECCHH
Confidence            5899999999999999887 5999999998854

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=95.13  E-value=0.0096  Score=46.80  Aligned_cols=37  Identities=19%  Similarity=0.309  Sum_probs=32.7

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCC--CeEEEEccCC
Q 014883           19 EPTAFDLIVIGTGLPESVISAAASASG--KSVLHLDPNP   55 (416)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G--~~V~vlE~~~   55 (416)
                      |+.+..|.|||+|.-|.++|..|+..|  .++.++|.+.
T Consensus         2 m~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           2 MPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             BTTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            455679999999999999999999998  5899999764

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.85  E-value=0.013  Score=46.88  Aligned_cols=31  Identities=16%  Similarity=0.172  Sum_probs=29.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (416)
                      .|-|||.|.-|...|..|+++||+|.+++++
T Consensus         3 kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~   33 (162)
T d3cuma2           3 QIAFIGLGHMGAPMATNLLKAGYLLNVFDLV   33 (162)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSS
T ss_pred             EEEEEEEHHHHHHHHHHHHHCCCeEEEEECc
Confidence            5899999999999999999999999999975

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=94.82  E-value=0.0099  Score=43.99  Aligned_cols=34  Identities=9%  Similarity=0.049  Sum_probs=30.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ..+|+|||+|.+|+-.|..|++.+.+|+++-+++
T Consensus        32 gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2          32 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred             CCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence            3589999999999999999999999988876654

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.81  E-value=0.012  Score=47.97  Aligned_cols=32  Identities=13%  Similarity=0.184  Sum_probs=29.0

Q ss_pred             cEEEE-CCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           24 DLIVI-GTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        24 DViII-GaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      .|+|| |+|--|.+.|..|+++|++|++..++.
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58898 789999999999999999999998764

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=94.69  E-value=0.032  Score=41.85  Aligned_cols=54  Identities=17%  Similarity=0.118  Sum_probs=41.8

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEE---eCCCcEEEcCEEEEC
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVR---LASGQDILSHKLVLD  333 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~---l~~G~~i~Ad~VI~~  333 (416)
                      ..+++.+.+..+..|.++++++.|++|+.+ +++++..+.   +.+++++.||.||+.
T Consensus        63 ~~~~~~~~~~l~~~gI~v~~~~~v~~i~~~-~~~~~~~~~~~~~~~~~~i~~D~Vi~a  119 (121)
T d1mo9a2          63 NETRAYVLDRMKEQGMEIISGSNVTRIEED-ANGRVQAVVAMTPNGEMRIETDFVFLG  119 (121)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCEEEEEEEC-TTSBEEEEEEEETTEEEEEECSCEEEC
T ss_pred             cchhhhhhhhhhccccEEEcCCEEEEEEec-CCceEEEEEEEeCCCCEEEEcCEEEEE
Confidence            467788888888999999999999999986 366654443   234578999999954

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=94.56  E-value=0.018  Score=46.60  Aligned_cols=33  Identities=15%  Similarity=0.176  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      .+|-|||-|..|...|..|.++|++|.+++++.
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~   35 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            579999999999999999999999999998864

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.54  E-value=0.014  Score=47.65  Aligned_cols=30  Identities=20%  Similarity=0.265  Sum_probs=28.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEcc
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDP   53 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~   53 (416)
                      +|.|||+|--|.+.|..|+++|++|.+.-+
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r   31 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEe
Confidence            789999999999999999999999999844

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.48  E-value=0.001  Score=57.14  Aligned_cols=36  Identities=0%  Similarity=-0.052  Sum_probs=33.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (416)
                      ..|+|||+|..|+-+|..|++.|.+|+++++++.++
T Consensus       181 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~~~~~  216 (233)
T d1djqa3         181 APRLIADATFTGHRVAREIEEANPQIAIPYKRETIA  216 (233)
T ss_dssp             SCCCHHHHHHHHHHHHHTTTSSCTTSCCCCCCCCCC
T ss_pred             CceeEecCchHHHHHHHHHHhcCCceEEEEeccccc
Confidence            579999999999999999999999999999999874

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.48  E-value=0.018  Score=45.92  Aligned_cols=31  Identities=26%  Similarity=0.291  Sum_probs=29.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (416)
                      .|-|||.|.-|...|..|+++|++|.+++++
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~   32 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRN   32 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeCC
Confidence            5889999999999999999999999999885

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.19  E-value=0.027  Score=41.90  Aligned_cols=36  Identities=11%  Similarity=0.065  Sum_probs=31.9

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 014883           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (416)
Q Consensus        19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (416)
                      +.....|+|||+|-.|..-|..|.+.|.+|+|+...
T Consensus         9 ~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~   44 (113)
T d1pjqa1           9 QLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (113)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             EeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            345678999999999999999999999999998653

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=94.11  E-value=0.025  Score=45.78  Aligned_cols=32  Identities=19%  Similarity=0.311  Sum_probs=29.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (416)
                      ++|-|||.|.-|...|..|.++|++|.+++++
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~   33 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRT   33 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECC
Confidence            36899999999999999999999999999874

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=94.06  E-value=0.027  Score=50.16  Aligned_cols=54  Identities=24%  Similarity=0.324  Sum_probs=43.9

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCC--Cc--EEEcCEEEEC
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS--GQ--DILSHKLVLD  333 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~--G~--~i~Ad~VI~~  333 (416)
                      ..+.+.|.+.+.+.|++|+++++|++|+.+ ++|++++|...+  ++  .|.|+.||+.
T Consensus       152 ~~~~~~l~~~a~~~gv~i~~~t~v~~li~d-~~G~V~Gv~~~~~~~~~~~i~Ak~VIlA  209 (322)
T d1d4ca2         152 AHVAQVLWDNAVKRGTDIRLNSRVVRILED-ASGKVTGVLVKGEYTGYYVIKADAVVIA  209 (322)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTEEEEEEECC-SSSCCCEEEEEETTTEEEEEECSEEEEC
T ss_pred             HHHHHHHHHHHHhcCceEEEeeeccccccc-ccccccceEEEeecccEEEEeCCeEEEc
Confidence            468889999899999999999999999986 378888887542  32  4899999953

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.99  E-value=0.017  Score=45.51  Aligned_cols=32  Identities=13%  Similarity=0.097  Sum_probs=29.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLD   52 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE   52 (416)
                      +...|+|||||-.|+..|..|.++|.+|+|+-
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~~GA~VtVva   43 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVS   43 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence            45689999999999999999999999999994

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=93.92  E-value=0.048  Score=41.31  Aligned_cols=54  Identities=7%  Similarity=0.116  Sum_probs=41.0

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCC--cEEEcCEEEEC
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG--QDILSHKLVLD  333 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G--~~i~Ad~VI~~  333 (416)
                      .++++.+.+..++.|.++++++.|++++.+ +++..+.++..+|  ++++||.||++
T Consensus        67 ~~~~~~l~~~l~~~gv~~~~~~~v~~v~~~-~~g~~v~~~~~~g~~~~i~~D~vl~A  122 (125)
T d1ojta2          67 RDLVKVWQKQNEYRFDNIMVNTKTVAVEPK-EDGVYVTFEGANAPKEPQRYDAVLVA  122 (125)
T ss_dssp             HHHHHHHHHHHGGGEEEEECSCEEEEEEEE-TTEEEEEEESSSCCSSCEEESCEEEC
T ss_pred             hhHHHHHHHHHHHcCcccccCcEEEEEEEc-CCcEEEEEEeCCCCeEEEEcCEEEEe
Confidence            478888888889999999999999999987 2443333333333  47999999954

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=93.83  E-value=0.024  Score=45.43  Aligned_cols=32  Identities=34%  Similarity=0.377  Sum_probs=29.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      .|+|+|+|..|+.++..+...|.+|+++|.++
T Consensus        29 ~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~   60 (170)
T d1e3ja2          29 TVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP   60 (170)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEEcccccchhhHhhHhhhcccccccchHH
Confidence            68999999999999999999999999999874

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=93.60  E-value=0.037  Score=42.06  Aligned_cols=37  Identities=16%  Similarity=0.069  Sum_probs=33.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (416)
                      ..+|+|||+|-+.+-.|..|++-+.+|+++-+++..-
T Consensus        27 ~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~~   63 (126)
T d1trba2          27 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR   63 (126)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC
T ss_pred             CCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccccc
Confidence            3589999999999999999999999999999988753

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=93.59  E-value=0.064  Score=42.50  Aligned_cols=35  Identities=11%  Similarity=0.085  Sum_probs=31.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCC--eEEEEccC
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGK--SVLHLDPN   54 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~--~V~vlE~~   54 (416)
                      .....|.|||+|.-|.++|+.|+..|.  ++.++|.+
T Consensus        18 ~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~   54 (160)
T d1i0za1          18 VPNNKITVVGVGQVGMACAISILGKSLADELALVDVL   54 (160)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            335699999999999999999999998  89999986

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=93.38  E-value=0.042  Score=41.71  Aligned_cols=38  Identities=18%  Similarity=0.115  Sum_probs=34.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      ..+|+|||+|-+.+-+|..|++-..+|.++-+++..-+
T Consensus        30 gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~~   67 (126)
T d1fl2a2          30 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA   67 (126)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCS
T ss_pred             CceEEEEeCCHHHHHHHHhhhccCCceEEEeccccccc
Confidence            45899999999999999999999999999999887643

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.33  E-value=0.032  Score=44.71  Aligned_cols=32  Identities=28%  Similarity=0.305  Sum_probs=29.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC-eEEEEccCC
Q 014883           24 DLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~-~V~vlE~~~   55 (416)
                      .|+|+|+|..|+.++..+...|. +|++.|.++
T Consensus        29 ~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~   61 (171)
T d1pl8a2          29 KVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA   61 (171)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             EEEEECCCccHHHHHHHHHHcCCceEEeccCCH
Confidence            69999999999999999999998 799999874

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.13  E-value=0.031  Score=44.31  Aligned_cols=26  Identities=23%  Similarity=0.175  Sum_probs=23.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeE
Q 014883           23 FDLIVIGTGLPESVISAAASASGKSV   48 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~~V   48 (416)
                      ..|||||+|..|+-+|..|++.|.++
T Consensus        30 krVvVIGgG~~g~d~a~~~~r~G~~~   55 (162)
T d1ps9a2          30 NKVAIIGCGGIGFDTAMYLSQPGEST   55 (162)
T ss_dssp             SEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             CceEEEcCchhHHHHHHHHHHcCCcc
Confidence            48999999999999999999999764

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=92.93  E-value=0.051  Score=42.60  Aligned_cols=33  Identities=15%  Similarity=0.120  Sum_probs=30.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      .|-|||.|..|...|..|+++|++|++.+++..
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~   34 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRS   34 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTCC
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchh
Confidence            588999999999999999999999999987544

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.85  E-value=0.083  Score=39.01  Aligned_cols=40  Identities=18%  Similarity=0.330  Sum_probs=34.6

Q ss_pred             CCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           17 PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        17 ~~~~~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      |+.+....|.|+|||==|-..|....+-|++|.|+|.++.
T Consensus         6 ~~~~~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2           6 ALRPAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             TTSTTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCCCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            3445566899999999999999999999999999998744

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.81  E-value=0.066  Score=40.83  Aligned_cols=38  Identities=18%  Similarity=0.161  Sum_probs=35.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (416)
                      ..||+|||+|-+.+-.|..|++--.+|.++-+++.+-+
T Consensus        34 gk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra   71 (130)
T d1vdca2          34 NKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA   71 (130)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS
T ss_pred             CCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecccccc
Confidence            46999999999999999999999999999999998754

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.80  E-value=0.057  Score=42.24  Aligned_cols=35  Identities=23%  Similarity=0.353  Sum_probs=30.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC--eEEEEccCC
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~--~V~vlE~~~   55 (416)
                      ....|.|||+|.-|.++|..|+..|+  ++.++|.++
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~   41 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence            34689999999999999999999986  799999754

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.79  E-value=0.08  Score=41.88  Aligned_cols=36  Identities=14%  Similarity=0.197  Sum_probs=31.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCC--eEEEEccCC
Q 014883           20 PTAFDLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~aA~~La~~G~--~V~vlE~~~   55 (416)
                      ++...|.|||+|.-|.++|+.|...|.  ++.++|.+.
T Consensus        17 ~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~   54 (159)
T d2ldxa1          17 LSRCKITVVGVGDVGMACAISILLKGLADELALVDADT   54 (159)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            344589999999999999999999986  799998764

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.59  E-value=0.049  Score=43.31  Aligned_cols=32  Identities=25%  Similarity=0.174  Sum_probs=29.5

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      .|+|+|+|..|+.++..+...|.+|.++++++
T Consensus        30 ~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~   61 (166)
T d1llua2          30 WVAISGIGGLGHVAVQYARAMGLHVAAIDIDD   61 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeeccccHHHHHHHHHHcCCccceecchh
Confidence            69999999999999999999999999998763

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.56  E-value=0.052  Score=43.32  Aligned_cols=33  Identities=15%  Similarity=0.144  Sum_probs=29.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      .|+|+|+|..|+.++..+...|.+|.+++.++.
T Consensus        30 ~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~   62 (168)
T d1piwa2          30 KVGIVGLGGIGSMGTLISKAMGAETYVISRSSR   62 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred             EEEEECCCCcchhHHHHhhhccccccccccchh
Confidence            589999999999999888888999999998764

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=92.30  E-value=0.073  Score=41.65  Aligned_cols=32  Identities=19%  Similarity=0.246  Sum_probs=30.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      .+||+|.|-.|...+..|.+.|++|+|+|.++
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~   36 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence            59999999999999999999999999999864

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=92.29  E-value=0.064  Score=39.82  Aligned_cols=51  Identities=12%  Similarity=0.079  Sum_probs=37.1

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeC-CCcEEEcCEEEEC
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQDILSHKLVLD  333 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~-~G~~i~Ad~VI~~  333 (416)
                      .++++.+.+..++.|.++++++.|+++.    ++..+..... +++++.||.||+.
T Consensus        62 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~----~~~~~~~~~~~~~~~i~~D~vi~A  113 (115)
T d1lvla2          62 SELTAPVAESLKKLGIALHLGHSVEGYE----NGCLLANDGKGGQLRLEADRVLVA  113 (115)
T ss_dssp             HHHHHHHHHHHHHHTCEEETTCEEEEEE----TTEEEEECSSSCCCEECCSCEEEC
T ss_pred             chhHHHHHHHHHhhcceEEcCcEEEEEc----CCeEEEEEcCCCeEEEEcCEEEEe
Confidence            4678888888899999999999999984    3432222212 2357999999853

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.18  E-value=0.074  Score=42.33  Aligned_cols=31  Identities=19%  Similarity=0.414  Sum_probs=27.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--eEEEEccC
Q 014883           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPN   54 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~--~V~vlE~~   54 (416)
                      .+.|||.|+-|.+.|..|.++|+  +|..+|++
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~   35 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDIN   35 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECC
Confidence            58999999999999999999996  67778875

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.01  E-value=0.076  Score=43.69  Aligned_cols=35  Identities=23%  Similarity=0.210  Sum_probs=30.7

Q ss_pred             CCcccEEEEC-CChhHHHHHHHHhhCCCeEEEEccC
Q 014883           20 PTAFDLIVIG-TGLPESVISAAASASGKSVLHLDPN   54 (416)
Q Consensus        20 ~~~~DViIIG-aGl~GL~aA~~La~~G~~V~vlE~~   54 (416)
                      |.+..|+|+| +|.-|...+..|.++|++|.++-|+
T Consensus         1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~   36 (205)
T d1hdoa_           1 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRD   36 (205)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcC
Confidence            3445799999 5999999999999999999999775

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=91.58  E-value=0.085  Score=40.84  Aligned_cols=32  Identities=22%  Similarity=0.278  Sum_probs=28.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC-eEEEEccCC
Q 014883           24 DLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~-~V~vlE~~~   55 (416)
                      .|.|||+|.-|.++|..|+..|. +++++|.+.
T Consensus         3 KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~   35 (142)
T d1uxja1           3 KISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCcceEEEEeecc
Confidence            78999999999999999999886 899999754

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=91.54  E-value=0.1  Score=40.44  Aligned_cols=32  Identities=31%  Similarity=0.381  Sum_probs=28.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--eEEEEccCC
Q 014883           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~--~V~vlE~~~   55 (416)
                      .|.|||+|.-|.++|..|+..|.  ++.++|.+.
T Consensus         3 Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~   36 (143)
T d1llda1           3 KLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   36 (143)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            69999999999999999999997  799988663

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.43  E-value=0.27  Score=36.82  Aligned_cols=54  Identities=13%  Similarity=-0.030  Sum_probs=39.0

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEE-EEEeCCCc------EEEcCEEEEC
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYK-GVRLASGQ------DILSHKLVLD  333 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~-gV~l~~G~------~i~Ad~VI~~  333 (416)
                      .++++.+.+..++.|.++++|+.|++|..+. +|..+ .+...+|+      .+.||.||+.
T Consensus        63 ~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~-~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a  123 (125)
T d3grsa2          63 SMISTNCTEELENAGVEVLKFSQVKEVKKTL-SGLEVSMVTAVPGRLPVMTMIPDVDCLLWA  123 (125)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTEEEEEEEEET-TEEEEEEEECCTTSCCEEEEEEEESEEEEC
T ss_pred             hHHHHHHHHHHHHCCCEEEeCCEEEEEEEcC-CeEEEEEEEccCCcCcCccccccCCEEEEE
Confidence            5688888888899999999999999998862 44322 23223443      4678998853

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=91.41  E-value=0.11  Score=40.19  Aligned_cols=32  Identities=13%  Similarity=0.236  Sum_probs=28.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--eEEEEccCC
Q 014883           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~--~V~vlE~~~   55 (416)
                      .|.|||+|.-|.++|..|...|.  ++.++|.+.
T Consensus         3 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~   36 (142)
T d1y6ja1           3 KVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   36 (142)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccC
Confidence            68999999999999999999987  899999765

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=91.30  E-value=0.13  Score=40.99  Aligned_cols=33  Identities=12%  Similarity=0.150  Sum_probs=30.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (416)
                      ..+|+|+|+|=++-++++.|++.|.+|.|+-|+
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt   50 (170)
T d1nyta1          18 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRT   50 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCEEEEECCcHHHHHHHHHhcccceEEEeccch
Confidence            458999999999999999999999999999765

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=91.30  E-value=0.095  Score=42.13  Aligned_cols=33  Identities=18%  Similarity=0.270  Sum_probs=29.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCC-CeEEEEccCCC
Q 014883           24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNPF   56 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G-~~V~vlE~~~~   56 (416)
                      -|+|+|+|-.||.+...+...| .+|.++|.++.
T Consensus        32 tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~   65 (176)
T d1d1ta2          32 TCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKD   65 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             EEEEECCCchhHHHHHHHHHcCCceEEEecCcHH
Confidence            3899999999999999999999 68999998764

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=91.20  E-value=0.1  Score=40.85  Aligned_cols=32  Identities=16%  Similarity=0.189  Sum_probs=29.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ++.|||+|.-|.+.|..|.++|++|.|.+++.
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~   33 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPHELIISGSSL   33 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             EEEEEeccHHHHHHHHHHHhCCCeEEEEcChH
Confidence            58899999999999999999999999998764

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=91.05  E-value=0.097  Score=40.72  Aligned_cols=33  Identities=21%  Similarity=0.313  Sum_probs=28.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC--eEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G~--~V~vlE~~~   55 (416)
                      ..|.|||+|.-|.++|..|...|.  ++.++|.+.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   36 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            368999999999999999999884  788888764

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=91.02  E-value=0.18  Score=37.38  Aligned_cols=35  Identities=23%  Similarity=0.257  Sum_probs=31.4

Q ss_pred             cccEEEECCC-----------hhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           22 AFDLIVIGTG-----------LPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        22 ~~DViIIGaG-----------l~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      ...|+|||+|           .++..|+.+|.+.|++|+++--|+.
T Consensus         4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPe   49 (121)
T d1a9xa4           4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPE   49 (121)
T ss_dssp             SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTT
T ss_pred             CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChh
Confidence            4579999999           5899999999999999999998864

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=90.82  E-value=0.088  Score=42.47  Aligned_cols=33  Identities=18%  Similarity=0.255  Sum_probs=29.5

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC-eEEEEccCCC
Q 014883           24 DLIVIGTGLPESVISAAASASGK-SVLHLDPNPF   56 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~-~V~vlE~~~~   56 (416)
                      .|+|+|+|..|+.+...+...|. +|.++|.++.
T Consensus        31 ~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~   64 (182)
T d1vj0a2          31 TVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPN   64 (182)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHH
T ss_pred             EEEEECCCccchhheecccccccccccccccccc
Confidence            68999999999999999999997 7999998653

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=90.77  E-value=0.11  Score=41.17  Aligned_cols=33  Identities=21%  Similarity=0.171  Sum_probs=29.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      .|+|+|+|-.|+.++..+...|.+|++++.++.
T Consensus        33 ~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~   65 (168)
T d1uufa2          33 KVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEA   65 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             EEEEeccchHHHHHHHHhhcccccchhhccchh
Confidence            689999999999999999999999999987643

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=90.70  E-value=0.14  Score=39.53  Aligned_cols=32  Identities=19%  Similarity=0.260  Sum_probs=29.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCC--CeEEEEccCC
Q 014883           24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNP   55 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G--~~V~vlE~~~   55 (416)
                      +|.|||+|--|.+.|..|+..|  -++.++|.++
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~   35 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEecccc
Confidence            6899999999999999999998  4899999876

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=90.59  E-value=0.12  Score=44.46  Aligned_cols=36  Identities=17%  Similarity=0.254  Sum_probs=32.0

Q ss_pred             CcccEEEECC-ChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           21 TAFDLIVIGT-GLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        21 ~~~DViIIGa-Gl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      ++..|+|+|| |+-|...+.+|.++|++|.++.++..
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~   38 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVREST   38 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCc
Confidence            3568999996 99999999999999999999998743

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=90.18  E-value=0.31  Score=42.54  Aligned_cols=53  Identities=15%  Similarity=0.063  Sum_probs=40.3

Q ss_pred             hHHHHHHHHHHhcCc--EEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883          280 ELPQAFCRRAAVKGC--LYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (416)
Q Consensus       280 ~l~~al~r~~~~~Gg--~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (416)
                      ++.+-|.+.++.++-  .|++|+.|+++..++ +...+.|++.++++++||.||+.
T Consensus        86 e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de-~~~~W~V~~~~~~~~~~~~~i~a  140 (298)
T d1w4xa1          86 EILRYINFVADKFDLRSGITFHTTVTAAAFDE-ATNTWTVDTNHGDRIRARYLIMA  140 (298)
T ss_dssp             HHHHHHHHHHHHTTGGGGEECSCCEEEEEEET-TTTEEEEEETTCCEEEEEEEEEC
T ss_pred             hHHHHHHHHHHHcCCcccccCCcEEEEEEEec-CCCceeeccccccccccceEEEe
Confidence            344445455555554  699999999999874 44568999999999999999954

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=90.17  E-value=0.2  Score=43.59  Aligned_cols=32  Identities=9%  Similarity=-0.005  Sum_probs=26.2

Q ss_pred             cEEEEC-CChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           24 DLIVIG-TGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        24 DViIIG-aGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      -++|.| +|=-|.+.|..|+++|++|++.+++.
T Consensus        27 ~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~   59 (294)
T d1w6ua_          27 VAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   59 (294)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            355555 56778999999999999999999864

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.11  E-value=0.15  Score=40.30  Aligned_cols=32  Identities=25%  Similarity=0.202  Sum_probs=29.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      .|+|+|+|..|++++..+...|.+|.+.+.++
T Consensus        30 ~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~   61 (168)
T d1rjwa2          30 WVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGD   61 (168)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEeecccchhhhhHHHhcCCCeEeccCCCH
Confidence            58999999999999999999999999998754

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=90.10  E-value=0.2  Score=37.58  Aligned_cols=37  Identities=19%  Similarity=0.398  Sum_probs=32.3

Q ss_pred             CCcccEEEECCCh-----------hHHHHHHHHhhCCCeEEEEccCCC
Q 014883           20 PTAFDLIVIGTGL-----------PESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        20 ~~~~DViIIGaGl-----------~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      .+...|+|||+|.           ++..|..+|.+.|++|+++-.|+.
T Consensus         5 ~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~   52 (127)
T d1a9xa3           5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPA   52 (127)
T ss_dssp             SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTT
T ss_pred             CCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchH
Confidence            3446899999995           789999999999999999999864

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=90.09  E-value=0.16  Score=37.89  Aligned_cols=46  Identities=15%  Similarity=0.128  Sum_probs=36.8

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~  332 (416)
                      .++.+.+.+..++.|.++++|+.|+++..   +    +|. .+++++.||.||+
T Consensus        72 ~~~~~~~~~~l~~~GV~~~~~~~v~~~~~---~----~v~-~~~~~i~~D~vi~  117 (122)
T d1xhca2          72 EELSNMIKDMLEETGVKFFLNSELLEANE---E----GVL-TNSGFIEGKVKIC  117 (122)
T ss_dssp             HHHHHHHHHHHHHTTEEEECSCCEEEECS---S----EEE-ETTEEEECSCEEE
T ss_pred             HHHHHHHHHHHHHCCcEEEeCCEEEEEeC---C----EEE-eCCCEEECCEEEE
Confidence            46777788888899999999999998842   2    243 5888999999984

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=89.89  E-value=0.15  Score=39.61  Aligned_cols=32  Identities=16%  Similarity=0.247  Sum_probs=28.4

Q ss_pred             cEEEECC-ChhHHHHHHHHhhCC--CeEEEEccCC
Q 014883           24 DLIVIGT-GLPESVISAAASASG--KSVLHLDPNP   55 (416)
Q Consensus        24 DViIIGa-Gl~GL~aA~~La~~G--~~V~vlE~~~   55 (416)
                      +|.|||| |.-|.++|..|+..|  .++.++|.+.
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~   36 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH   36 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchh
Confidence            6999996 999999999999999  4889988753

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=89.71  E-value=0.64  Score=38.75  Aligned_cols=51  Identities=20%  Similarity=0.122  Sum_probs=36.7

Q ss_pred             HHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCCCC
Q 014883          287 RRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVP  339 (416)
Q Consensus       287 r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~~~~~  339 (416)
                      +.+...-.--+....|..+..+  ++++++|++.+|.+|.|+.||++.-..+.
T Consensus        75 ~~l~~~~nL~i~q~~V~dli~e--~~~v~gV~t~~G~~~~AkaVILtTGTFL~  125 (230)
T d2cula1          75 YLLEGLRPLHLFQATATGLLLE--GNRVVGVRTWEGPPARGEKVVLAVGSFLG  125 (230)
T ss_dssp             HHHHTCTTEEEEECCEEEEEEE--TTEEEEEEETTSCCEECSEEEECCTTCSS
T ss_pred             HHHhhhcCHHHHhccceeeEec--ccceeeEEeccccEEEEeEEEEccCccee
Confidence            3344443444456778888887  88899999999999999999965433334

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=89.67  E-value=0.12  Score=44.22  Aligned_cols=33  Identities=15%  Similarity=0.263  Sum_probs=30.5

Q ss_pred             ccEEEECC-ChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           23 FDLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGa-Gl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      +.|+|.|| |+-|...+.+|.++|++|+.+++++
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            46999997 9999999999999999999999865

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=89.44  E-value=0.14  Score=40.98  Aligned_cols=32  Identities=25%  Similarity=0.413  Sum_probs=28.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC-eEEEEccCC
Q 014883           24 DLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~-~V~vlE~~~   55 (416)
                      .|+|+|+|..|+.++..+...|. +|.+.|.++
T Consensus        30 ~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~   62 (174)
T d1jqba2          30 SVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP   62 (174)
T ss_dssp             CEEEECCSHHHHHHHHHHHTTTCSCEEEECCCH
T ss_pred             EEEEEcCCcchhhhhhhhhcccccccccccchh
Confidence            79999999999999999999996 799999864

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=89.32  E-value=0.15  Score=41.64  Aligned_cols=32  Identities=31%  Similarity=0.336  Sum_probs=27.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC-eEEEEccCC
Q 014883           24 DLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~-~V~vlE~~~   55 (416)
                      .|+|+|+|..||.|+..+...|. +|.+.|.++
T Consensus        28 tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~   60 (195)
T d1kola2          28 TVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP   60 (195)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             EEEEECcCHHHHHHHHHHHhhcccceeeecccc
Confidence            78999999999999998877765 788888653

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=89.27  E-value=0.22  Score=35.48  Aligned_cols=36  Identities=14%  Similarity=0.030  Sum_probs=28.8

Q ss_pred             CCcccEEEECCChhHHHH-HHHHhhCCCeEEEEccCC
Q 014883           20 PTAFDLIVIGTGLPESVI-SAAASASGKSVLHLDPNP   55 (416)
Q Consensus        20 ~~~~DViIIGaGl~GL~a-A~~La~~G~~V~vlE~~~   55 (416)
                      .....+-+||-|=+|+++ |..|.++|++|.--|.+.
T Consensus         6 ~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~   42 (96)
T d1p3da1           6 RRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD   42 (96)
T ss_dssp             TTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC
T ss_pred             hhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence            344567788777777666 999999999999999763

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=88.95  E-value=0.18  Score=41.89  Aligned_cols=35  Identities=20%  Similarity=0.301  Sum_probs=30.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ...+|+|||+|-+|.-+|..|++++.++.++=++.
T Consensus        31 ~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~   65 (235)
T d1w4xa2          31 SGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP   65 (235)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CCCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence            45689999999999999999999999998886653

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=88.89  E-value=0.22  Score=39.44  Aligned_cols=33  Identities=27%  Similarity=0.235  Sum_probs=29.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC-eEEEEccC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGK-SVLHLDPN   54 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~-~V~vlE~~   54 (416)
                      ..+|+|+|+|=++-+++..|.+.|. ++.|+-|+
T Consensus        17 ~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~   50 (167)
T d1npya1          17 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARN   50 (167)
T ss_dssp             TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEeccc
Confidence            4589999999999999999999995 78998765

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=88.86  E-value=0.19  Score=40.14  Aligned_cols=33  Identities=18%  Similarity=0.195  Sum_probs=29.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC-eEEEEccCCC
Q 014883           24 DLIVIGTGLPESVISAAASASGK-SVLHLDPNPF   56 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~-~V~vlE~~~~   56 (416)
                      .|+|+|+|.-|+.++..+...|. +|++.|.++.
T Consensus        31 ~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~   64 (174)
T d1e3ia2          31 TCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGE   64 (174)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             EEEEECCChHHHHHHHHHHHhCCceeeeeccchH
Confidence            69999999999999999999997 5778888754

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=88.58  E-value=0.25  Score=44.26  Aligned_cols=59  Identities=19%  Similarity=0.216  Sum_probs=37.6

Q ss_pred             CCcchHHHHHHHHHHhcC-cEEEcCCceeEEEEecCCCcEEEEEeCC--C-----cEEEcCEEEECC
Q 014883          276 YGQGELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLAS--G-----QDILSHKLVLDP  334 (416)
Q Consensus       276 gG~~~l~~al~r~~~~~G-g~i~l~~~V~~I~~~~~~g~~~gV~l~~--G-----~~i~Ad~VI~~p  334 (416)
                      ++-......+...++..| .+|++++.|++|+.+.+++.+++|+..+  +     ++++||.||++.
T Consensus       215 ~~k~s~~~~yl~~a~~~gn~~i~~~t~V~~I~~~~~g~~~v~v~~~~~~~~~~~~~~i~Ak~VVLaA  281 (367)
T d1n4wa1         215 HGKQSLDKTYLAAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFLGA  281 (367)
T ss_dssp             SSBCCTTTTHHHHHHHTTSEEEEESEEEEEEEECTTSSEEEEEEEECTTCCEEEEEEEEEEEEEECS
T ss_pred             ccccChhHhhhHHHHhCCCeEEECCCEEEEEEEcCCCCEEEEEEEECCCCcceeEEEEecCEEEEec
Confidence            333344444445556666 7999999999999874233455555432  2     358899999653

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=88.18  E-value=0.22  Score=38.74  Aligned_cols=32  Identities=9%  Similarity=0.240  Sum_probs=28.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCC-CeEEEEccCC
Q 014883           24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNP   55 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G-~~V~vlE~~~   55 (416)
                      ++.+||+|--|.+.|..|.++| ++|.+.+++.
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~   34 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCCh
Confidence            6899999999999998888777 9999998875

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.88  E-value=0.16  Score=41.99  Aligned_cols=39  Identities=21%  Similarity=0.237  Sum_probs=32.4

Q ss_pred             HhcCcEEEcCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 014883          290 AVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (416)
Q Consensus       290 ~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~  333 (416)
                      ++.|.++++++.|++|..+  ++   .|++++|+++.+|.+|+.
T Consensus        94 ~~~gI~~~~g~~V~~id~~--~~---~V~l~dG~~i~~d~lViA  132 (213)
T d1m6ia1          94 ENGGVAVLTGKKVVQLDVR--DN---MVKLNDGSQITYEKCLIA  132 (213)
T ss_dssp             TTCEEEEEETCCEEEEEGG--GT---EEEETTSCEEEEEEEEEC
T ss_pred             HHCCeEEEeCCEEEEeecc--Cc---eeeeccceeeccceEEEe
Confidence            5678999999999999764  33   578899999999998843

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=87.62  E-value=0.67  Score=40.54  Aligned_cols=41  Identities=32%  Similarity=0.340  Sum_probs=37.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (416)
                      ..|||||||+|++||+||+.|+++|++|+||||+...||.+
T Consensus         4 ~~~DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~~~~~g~S   44 (336)
T d2bs2a2           4 QYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHS   44 (336)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGGGSGG
T ss_pred             eecCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCch
Confidence            46899999999999999999999999999999997776643

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.54  E-value=0.38  Score=42.87  Aligned_cols=36  Identities=19%  Similarity=0.265  Sum_probs=31.3

Q ss_pred             CCcccEEEEC-CChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           20 PTAFDLIVIG-TGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        20 ~~~~DViIIG-aGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      .+.+.|+|.| +|+-|...+..|.++|++|++++.+.
T Consensus        13 ~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~   49 (363)
T d2c5aa1          13 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKK   49 (363)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCC
Confidence            3455799998 89999999999999999999998653

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.52  E-value=0.25  Score=38.08  Aligned_cols=32  Identities=16%  Similarity=0.101  Sum_probs=28.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--eEEEEccCC
Q 014883           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~--~V~vlE~~~   55 (416)
                      +|.|||+|.-|.++|..|+.+|.  ++.++|.+.
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   35 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEeccc
Confidence            78999999999999999999885  699998653

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=87.36  E-value=0.28  Score=42.35  Aligned_cols=35  Identities=17%  Similarity=0.196  Sum_probs=30.3

Q ss_pred             cccEEEECC-ChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           22 AFDLIVIGT-GLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        22 ~~DViIIGa-Gl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      +..|+|+|| |.-|...+..|.++|++|.++-++..
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   38 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV   38 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence            346999995 99999999999999999999977543

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=87.26  E-value=0.38  Score=43.03  Aligned_cols=58  Identities=17%  Similarity=0.250  Sum_probs=36.1

Q ss_pred             cCCcchHHHHHHHHHHhcC-cEEEcCCceeEEEEecCCCcEEEEEe--CC--C-----cEEEcCEEEECC
Q 014883          275 IYGQGELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRL--AS--G-----QDILSHKLVLDP  334 (416)
Q Consensus       275 ~gG~~~l~~al~r~~~~~G-g~i~l~~~V~~I~~~~~~g~~~gV~l--~~--G-----~~i~Ad~VI~~p  334 (416)
                      .++......++...+...| .+|++++.|++|+.+  +++.++|..  .+  +     ++++||.||++.
T Consensus       218 ~~~k~s~~~~~L~~a~~~g~~~i~t~~~V~~I~~~--~~~~~~V~v~~~~~~~~~~~~~~~~A~~VILaA  285 (370)
T d3coxa1         218 NAGKKSLDKTYLAQAAATGKLTITTLHRVTKVAPA--TGSGYSVTMEQIDEQGNVVATKVVTADRVFFAA  285 (370)
T ss_dssp             SSSBCCGGGTHHHHHHHTTCEEEECSEEEEEEEEC--SSSSEEEEEEEECTTSCEEEEEEEEEEEEEECS
T ss_pred             cccccChHHHHHHHHHhCCCcEEEecCcEEEEEEc--CCCeEEEEEEEeCCccceeeEEEEECCEEEEee
Confidence            4454444444444455555 699999999999997  333233332  22  2     358899999653

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.26  E-value=0.27  Score=38.64  Aligned_cols=34  Identities=21%  Similarity=0.173  Sum_probs=31.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      -..|+|||-|--|-..|..|+..|-+|+|.|..+
T Consensus        24 Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp   57 (163)
T d1li4a1          24 GKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP   57 (163)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence            4579999999999999999999999999999975

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=87.24  E-value=0.39  Score=42.39  Aligned_cols=58  Identities=16%  Similarity=0.096  Sum_probs=38.9

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCCCcEEEEEeCC---Cc---EEEcCEEE-ECCCCCCC
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS---GQ---DILSHKLV-LDPSFTVP  339 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l~~---G~---~i~Ad~VI-~~p~~~~~  339 (416)
                      .++.+-|...+..++..|++|+.|++|+.+  +++ +.|++.+   ++   +..||.|| ++..+..|
T Consensus       113 ~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~--~~~-w~Vt~~~~~~~~~~~~~~~d~VI~AtG~~s~p  177 (335)
T d2gv8a1         113 HTIQEYQRIYAQPLLPFIKLATDVLDIEKK--DGS-WVVTYKGTKAGSPISKDIFDAVSICNGHYEVP  177 (335)
T ss_dssp             HHHHHHHHHHHGGGGGGEECSEEEEEEEEE--TTE-EEEEEEESSTTCCEEEEEESEEEECCCSSSSB
T ss_pred             HHHHHHHHHHHHHhhhcccCceEEEEEEec--CCE-EEEEEEecCCCCeEEEEEeeEEEEcccccccc
Confidence            345555656666778899999999999987  565 4555443   22   35699999 45544333

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=87.21  E-value=0.38  Score=38.85  Aligned_cols=35  Identities=17%  Similarity=0.137  Sum_probs=31.0

Q ss_pred             CcccEEEEC-CChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           21 TAFDLIVIG-TGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        21 ~~~DViIIG-aGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      +...|+|.| +|-.|..+|..|++.|.+|+++.++.
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~   57 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL   57 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence            345788888 69999999999999999999999875

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=86.76  E-value=0.32  Score=38.64  Aligned_cols=32  Identities=22%  Similarity=0.280  Sum_probs=28.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCC-CeEEEEccCC
Q 014883           24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNP   55 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G-~~V~vlE~~~   55 (416)
                      -|+|+|+|-.|++++..++..| .+|.+.+.++
T Consensus        31 tVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~   63 (176)
T d2jhfa2          31 TCAVFGLGGVGLSVIMGCKAAGAARIIGVDINK   63 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             EEEEECCCCcHHHHHHHHHHcCCceEEeecCcH
Confidence            3899999999999999999998 5888888764

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=86.54  E-value=0.41  Score=37.10  Aligned_cols=33  Identities=15%  Similarity=0.329  Sum_probs=28.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCC-CeEEEEccCC
Q 014883           23 FDLIVIGTGLPESVISAAASASG-KSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIGaGl~GL~aA~~La~~G-~~V~vlE~~~   55 (416)
                      ..|.|||+|.-|.+.|..|.+.+ .++.++|.+.
T Consensus         4 ~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~   37 (150)
T d1t2da1           4 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   37 (150)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccC
Confidence            47999999999999999998887 4788888754

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.01  E-value=0.32  Score=37.47  Aligned_cols=31  Identities=19%  Similarity=0.131  Sum_probs=27.1

Q ss_pred             cEEEECC-ChhHHHHHHHHhhCCC--eEEEEccC
Q 014883           24 DLIVIGT-GLPESVISAAASASGK--SVLHLDPN   54 (416)
Q Consensus        24 DViIIGa-Gl~GL~aA~~La~~G~--~V~vlE~~   54 (416)
                      .|.|||| |.-|.++|..|+..|.  ++.++|.+
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~   35 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA   35 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEecc
Confidence            5899996 9999999999999986  57788875

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=86.00  E-value=0.31  Score=38.84  Aligned_cols=32  Identities=16%  Similarity=0.194  Sum_probs=28.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC-eEEEEccCC
Q 014883           24 DLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~-~V~vlE~~~   55 (416)
                      .|+|+|+|-.|+.+...+...|. +|.+.|.++
T Consensus        30 ~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~   62 (174)
T d1p0fa2          30 TCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHK   62 (174)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             EEEEECCCchhHHHHHHHHHcCCceeeccCChH
Confidence            58999999999999999999995 788888864

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=85.90  E-value=0.35  Score=37.05  Aligned_cols=32  Identities=19%  Similarity=0.296  Sum_probs=28.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCC--CeEEEEccCC
Q 014883           24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNP   55 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G--~~V~vlE~~~   55 (416)
                      +|.|||+|--|.++|..|+..|  -++.++|.++
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~   35 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccc
Confidence            6899999999999999999888  4799998764

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=85.36  E-value=0.42  Score=37.77  Aligned_cols=33  Identities=21%  Similarity=0.314  Sum_probs=27.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC-eEEEEccCCC
Q 014883           24 DLIVIGTGLPESVISAAASASGK-SVLHLDPNPF   56 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~-~V~vlE~~~~   56 (416)
                      -|+|+|+|..|+.++..+++.|- +|.+++.++.
T Consensus        31 ~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~   64 (175)
T d1cdoa2          31 TCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPD   64 (175)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             EEEEEecCCccchHHHHHHHHhhchheeecchHH
Confidence            38899999999999999988875 6888888753

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=85.25  E-value=0.29  Score=38.75  Aligned_cols=32  Identities=16%  Similarity=0.210  Sum_probs=27.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCC-CeEEEEccCC
Q 014883           24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNP   55 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G-~~V~vlE~~~   55 (416)
                      .|+|+|+|..|+.++..+...| ..|++.+.++
T Consensus        35 ~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~   67 (172)
T d1h2ba2          35 YVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE   67 (172)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred             EEEEeCCChHHHHHHHHHHhhcCcccccccchh
Confidence            6999999999999999888777 5677788875

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=84.83  E-value=0.34  Score=38.51  Aligned_cols=32  Identities=22%  Similarity=0.277  Sum_probs=26.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEE-EEccCC
Q 014883           24 DLIVIGTGLPESVISAAASASGKSVL-HLDPNP   55 (416)
Q Consensus        24 DViIIGaGl~GL~aA~~La~~G~~V~-vlE~~~   55 (416)
                      .|+|+|+|..|++++..+...|.+++ +.+.++
T Consensus        31 ~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~   63 (174)
T d1f8fa2          31 SFVTWGAGAVGLSALLAAKVCGASIIIAVDIVE   63 (174)
T ss_dssp             EEEEESCSHHHHHHHHHHHHHTCSEEEEEESCH
T ss_pred             EEEEeCCCHHHhhhhhcccccccceeeeeccHH
Confidence            69999999999999999988888665 556543

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=84.58  E-value=0.45  Score=37.88  Aligned_cols=32  Identities=6%  Similarity=0.252  Sum_probs=28.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 014883           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (416)
                      ...|+|+|+|=++-++++.|++.| +|.|+-|+
T Consensus        18 ~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~   49 (177)
T d1nvta1          18 DKNIVIYGAGGAARAVAFELAKDN-NIIIANRT   49 (177)
T ss_dssp             SCEEEEECCSHHHHHHHHHHTSSS-EEEEECSS
T ss_pred             CCEEEEECCcHHHHHHHHHHcccc-ceeeehhh
Confidence            458999999999999999999888 89998774

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=84.22  E-value=0.46  Score=37.65  Aligned_cols=34  Identities=6%  Similarity=0.171  Sum_probs=30.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (416)
                      ....|+|+|+|=++-+++..|.+.+.+|.|+-|+
T Consensus        17 ~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~   50 (171)
T d1p77a1          17 PNQHVLILGAGGATKGVLLPLLQAQQNIVLANRT   50 (171)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEECCcHHHHHHHHHHcccCceeeeccch
Confidence            3457999999999999999999999999999776

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=83.91  E-value=0.36  Score=38.04  Aligned_cols=32  Identities=22%  Similarity=0.341  Sum_probs=27.8

Q ss_pred             cEEEEC-CChhHHHHHHHHhhCC-CeEEEEccCC
Q 014883           24 DLIVIG-TGLPESVISAAASASG-KSVLHLDPNP   55 (416)
Q Consensus        24 DViIIG-aGl~GL~aA~~La~~G-~~V~vlE~~~   55 (416)
                      .|+|+| +|..|+.++..+...| .+|.+.+.++
T Consensus        30 ~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~   63 (170)
T d1jvba2          30 TLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE   63 (170)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH
T ss_pred             EEEEEeccccceeeeeecccccccccccccccch
Confidence            699999 5999999999888888 5999999874

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=83.41  E-value=0.81  Score=36.46  Aligned_cols=36  Identities=14%  Similarity=0.277  Sum_probs=30.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC-eEEEEccCCC
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNPF   56 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~-~V~vlE~~~~   56 (416)
                      ....|+|+|+|=++-++++.|.+.|. ++.|+.++..
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~   53 (182)
T d1vi2a1          17 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE   53 (182)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSST
T ss_pred             CCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchH
Confidence            34689999999999999999999986 6778887643

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=83.36  E-value=0.56  Score=39.43  Aligned_cols=32  Identities=13%  Similarity=0.240  Sum_probs=25.6

Q ss_pred             cE-EEECC-ChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           24 DL-IVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        24 DV-iIIGa-Gl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      .| +|.|| +=-|++.|..|+++|++|+++++++
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~   35 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRD   35 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            35 45564 4568999999999999999999875

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=83.28  E-value=0.62  Score=35.66  Aligned_cols=31  Identities=16%  Similarity=0.221  Sum_probs=27.1

Q ss_pred             cEEEEC-CChhHHHHHHHHhhCCC--eEEEEccC
Q 014883           24 DLIVIG-TGLPESVISAAASASGK--SVLHLDPN   54 (416)
Q Consensus        24 DViIIG-aGl~GL~aA~~La~~G~--~V~vlE~~   54 (416)
                      .|.||| +|.-|.++|..|...|.  ++.++|-+
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~   35 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIP   35 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCG
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecC
Confidence            589999 69999999999999986  68888853

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.02  E-value=0.82  Score=37.59  Aligned_cols=35  Identities=17%  Similarity=0.172  Sum_probs=27.7

Q ss_pred             cccEEEECCChhHHHHHHHHh--------------------hCC-CeEEEEccCCC
Q 014883           22 AFDLIVIGTGLPESVISAAAS--------------------ASG-KSVLHLDPNPF   56 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La--------------------~~G-~~V~vlE~~~~   56 (416)
                      ..+|||||+|-..+=+|+.|.                    +.| .+|.++-++..
T Consensus        39 gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~   94 (216)
T d1lqta1          39 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGP   94 (216)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCG
T ss_pred             CceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECCh
Confidence            458999999999999999887                    455 56777776643

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.80  E-value=2.4  Score=31.00  Aligned_cols=54  Identities=7%  Similarity=0.073  Sum_probs=37.4

Q ss_pred             chHHHHHHHHHHhcCcEEEcCCceeEEEEecCC-CcEEEEEeCC--C-c--EEEcCEEEE
Q 014883          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNS-GSYKGVRLAS--G-Q--DILSHKLVL  332 (416)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~-g~~~gV~l~~--G-~--~i~Ad~VI~  332 (416)
                      .++++.+.+..++.|.+|++|+.|++++...++ .....|++.+  + +  .+.+|.|++
T Consensus        60 ~~~~~~l~~~l~~~Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~  119 (122)
T d1h6va2          60 QDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLL  119 (122)
T ss_dssp             HHHHHHHHHHHHHTTEEEEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESEEEC
T ss_pred             HHHHHHHHHHHHHCCCEEEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCEEEE
Confidence            468888989999999999999999999764211 1123444332  2 2  346899884

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=82.69  E-value=0.56  Score=40.97  Aligned_cols=51  Identities=16%  Similarity=0.245  Sum_probs=36.8

Q ss_pred             hHHHHHHHHH-HhcCcEEEcCCceeEEEEecCCCcEEEEEe---CCCcE--EEcCEEEE
Q 014883          280 ELPQAFCRRA-AVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQD--ILSHKLVL  332 (416)
Q Consensus       280 ~l~~al~r~~-~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~l---~~G~~--i~Ad~VI~  332 (416)
                      ++...+.+.+ +..+.+|+.+++|++|..+  +|+++||..   .+|+.  +.|+.||+
T Consensus       135 ~~~~~~l~~~~~~~~v~i~~~~~v~~Ll~d--~g~v~Gvv~~~~~~g~~~~~~AkaVIL  191 (311)
T d1kf6a2         135 HMLHTLFQTSLQFPQIQRFDEHFVLDILVD--DGHVRGLVAMNMMEGTLVQIRANAVVM  191 (311)
T ss_dssp             HHHHHHHHHHTTCTTEEEEETEEEEEEEEE--TTEEEEEEEEETTTTEEEEEECSCEEE
T ss_pred             HHHHhHHHHHHccCcceeEeeeEeeeeEec--CCcceeEEEEEcCCCcEEEEECCEEEE
Confidence            4444444434 4457999999999999998  788888753   45653  58999994

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=82.38  E-value=0.64  Score=35.73  Aligned_cols=32  Identities=19%  Similarity=0.283  Sum_probs=26.2

Q ss_pred             cEEEEC-CChhHHHHHHHHhh-C--CCeEEEEccCC
Q 014883           24 DLIVIG-TGLPESVISAAASA-S--GKSVLHLDPNP   55 (416)
Q Consensus        24 DViIIG-aGl~GL~aA~~La~-~--G~~V~vlE~~~   55 (416)
                      +|.||| +|.-|.++|..|+. .  +.++.++|.++
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~   37 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP   37 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc
Confidence            789999 69999999998864 3  57899998643

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=81.90  E-value=0.83  Score=37.81  Aligned_cols=35  Identities=11%  Similarity=0.077  Sum_probs=30.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhC--------------------C-CeEEEEccCCC
Q 014883           22 AFDLIVIGTGLPESVISAAASAS--------------------G-KSVLHLDPNPF   56 (416)
Q Consensus        22 ~~DViIIGaGl~GL~aA~~La~~--------------------G-~~V~vlE~~~~   56 (416)
                      .-+|||||+|-.++=+|+.|.+.                    | .+|.++-++..
T Consensus        39 gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~   94 (225)
T d1cjca1          39 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP   94 (225)
T ss_dssp             SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             CceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcCh
Confidence            46999999999999999999984                    4 78888887754

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=81.42  E-value=0.73  Score=40.61  Aligned_cols=33  Identities=21%  Similarity=0.215  Sum_probs=30.1

Q ss_pred             ccEEEEC-CChhHHHHHHHHhhCCCeEEEEccCC
Q 014883           23 FDLIVIG-TGLPESVISAAASASGKSVLHLDPNP   55 (416)
Q Consensus        23 ~DViIIG-aGl~GL~aA~~La~~G~~V~vlE~~~   55 (416)
                      ..|+|.| +|+-|...+..|.++|++|.+++++.
T Consensus         9 KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~   42 (356)
T d1rkxa_           9 KRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTA   42 (356)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            4799999 78999999999999999999999764

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=81.42  E-value=0.64  Score=41.36  Aligned_cols=32  Identities=19%  Similarity=0.223  Sum_probs=27.0

Q ss_pred             EEEEC-CChhHHHHHHHHhhCCCeEEEEccCCC
Q 014883           25 LIVIG-TGLPESVISAAASASGKSVLHLDPNPF   56 (416)
Q Consensus        25 ViIIG-aGl~GL~aA~~La~~G~~V~vlE~~~~   56 (416)
                      |+|.| +|+-|...+.+|.++|++|.+++++..
T Consensus         4 vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~   36 (357)
T d1db3a_           4 ALITGVTGQDGSYLAEFLLEKGYEVHGIKRRAS   36 (357)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEECC---
T ss_pred             EEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCc
Confidence            55778 899999999999999999999998754

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=81.40  E-value=0.38  Score=36.04  Aligned_cols=35  Identities=17%  Similarity=0.319  Sum_probs=24.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhh-CCCeEE-EEccCC
Q 014883           21 TAFDLIVIGTGLPESVISAAASA-SGKSVL-HLDPNP   55 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~-~G~~V~-vlE~~~   55 (416)
                      .++.|+|+|||-+|-+.+.+|.+ .|++++ .+|-+.
T Consensus         2 ~~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~   38 (126)
T d2dt5a2           2 RKWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDP   38 (126)
T ss_dssp             SCEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCT
T ss_pred             CCceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCch
Confidence            35789999999999988877653 465544 445443

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=81.13  E-value=0.85  Score=35.56  Aligned_cols=34  Identities=18%  Similarity=0.289  Sum_probs=29.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC-eEEEEccC
Q 014883           21 TAFDLIVIGTGLPESVISAAASASGK-SVLHLDPN   54 (416)
Q Consensus        21 ~~~DViIIGaGl~GL~aA~~La~~G~-~V~vlE~~   54 (416)
                      ....|+|||+|-.|-..|..|...|. +++|.=|.
T Consensus        23 ~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt   57 (159)
T d1gpja2          23 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT   57 (159)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred             ccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence            45679999999999999999999997 58888765

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.51  E-value=1  Score=37.56  Aligned_cols=49  Identities=16%  Similarity=0.142  Sum_probs=37.3

Q ss_pred             CCCCCCCcccEEEECCCh-hHHHHHHHHhhCCCeEEEEccCCCCCCcccccC
Q 014883           15 YPPIEPTAFDLIVIGTGL-PESVISAAASASGKSVLHLDPNPFYGSHFSSLS   65 (416)
Q Consensus        15 ~~~~~~~~~DViIIGaGl-~GL~aA~~La~~G~~V~vlE~~~~~GG~~~s~~   65 (416)
                      .|+++.  .-++|-||+= -|.+.|..|+++|++|.+.+++..-......+.
T Consensus         2 ~psl~g--K~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~   51 (237)
T d1uzma1           2 KPPFVS--RSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLFGVE   51 (237)
T ss_dssp             CCCCCC--CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTSEEEE
T ss_pred             CCCCCC--CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhcCceEEE
Confidence            456654  2467777653 688999999999999999999987776665544