Citrus Sinensis ID: 014910

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410------
MLMQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAVGGSSSSELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYKSSDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKFEQKNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSKFTDRMRRIKIPLPPVDERKKIVEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA
ccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHcccccEEEEEcccccEEEEEEEccccEEEEEcHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccccccEEEcc
ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHcccccEEEEEcccccEEEEEEcccccEEEEEEHHHHHHHHHHcccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccEEEcc
mlmqggssgavQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCnkavggssssELLATFCDNILkkggneklsDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLlfdrsanddhERSILTKLKqqcggqftskmegMVTDLTLARENQTSFEEYLSnnqnahpgidlSVTVLTtgfwpsykssdlnlpseMVKCVEVFKGFYetktkhrklTWIYSlgqcningkfeqKNIELIVSTYQAATLLLFntsdrlsysEIMTQLNLTHDDLVRLLHSLSCAKYKIllkepntktisqsdhfefnskFTDRMRrikiplppvderkkIVEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDylerdkenpnmfryla
mlmqggssgavqEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAVGGSSSSELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLlfdrsanddhersiltklkqqcggqftskMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYkssdlnlpsEMVKCVEVFKGFYetktkhrkltWIYSLGQCNINGKFEQKNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLkepntktisqsdhfefnskftdrmrrikiplppvderkkivedvdkdrrYAIDAALVRIMKSRKVLGHQQLVSECVEQlsrmfkpdikaIKKRMEDLitrdylerdkenpnmfryla
MLMQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAVGGSSSSELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYKSSDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKFEQKNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSKFTDRMRRIKIPLPPVDERKKIVEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA
************EQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAVGGSSSSELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRS********ILTKLKQQCGGQFT****GMVTDLTLA*********YL***QNAHPGIDLSVTVLTTGFWPSYKSSDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKFEQKNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKT*****HFEFNSKFTDRMRRIKIPLPPVD*RKKIVEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDY***************
**************VLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAVGGSSSSELLATFCDNILK*************ETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLS****AHPGIDLSVTVLTTGFWPSYKSSDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKFEQKNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSKFTDRMRRI*******************DRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA
**********VQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAVGGSSSSELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYKSSDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKFEQKNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSKFTDRMRRIKIPLPPVDERKKIVEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA
********GAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAVGGSSSSELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYKSSDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKFEQKNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSKFTDRMRRIKIPLPPVDERKKIVEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLMQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAVGGSSSSELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYKSSDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKFEQKNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSKFTDRMRRIKIPLPPVDERKKIVEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query416 2.2.26 [Sep-21-2011]
Q94AH6738 Cullin-1 OS=Arabidopsis t yes no 0.992 0.559 0.895 0.0
Q9SRZ0742 Cullin-2 OS=Arabidopsis t no no 0.990 0.555 0.727 0.0
P0CH31721 Putative cullin-like prot no no 0.923 0.532 0.705 1e-167
A2A432970 Cullin-4B OS=Mus musculus yes no 0.959 0.411 0.418 1e-86
Q13620913 Cullin-4B OS=Homo sapiens yes no 0.959 0.437 0.418 2e-86
Q13619759 Cullin-4A OS=Homo sapiens no no 0.949 0.520 0.414 3e-85
Q3TCH7759 Cullin-4A OS=Mus musculus no no 0.949 0.520 0.417 3e-84
Q54NZ5769 Cullin-3 OS=Dictyostelium yes no 0.944 0.511 0.381 4e-77
Q8LGH4792 Cullin-4 OS=Arabidopsis t no no 0.906 0.476 0.417 4e-76
Q9ZVH4732 Cullin-3A OS=Arabidopsis no no 0.937 0.532 0.385 8e-74
>sp|Q94AH6|CUL1_ARATH Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1 Back     alignment and function desciption
 Score =  779 bits (2011), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/413 (89%), Positives = 395/413 (95%)

Query: 4   QGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAVGGSSSS 63
           Q  ++ +VQEQVLIRK+IELHDKYM YVT CF NHTLFHKALKEAFEIFCNK V GSSS+
Sbjct: 326 QVANTASVQEQVLIRKVIELHDKYMVYVTECFQNHTLFHKALKEAFEIFCNKTVAGSSSA 385

Query: 64  ELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDR 123
           ELLATFCDNILKKGG+EKLSDEAIE+TLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDR
Sbjct: 386 ELLATFCDNILKKGGSEKLSDEAIEDTLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDR 445

Query: 124 SANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLS 183
           SANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQ SFE+YL +N  A+PGIDL+
Sbjct: 446 SANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQNSFEDYLGSNPAANPGIDLT 505

Query: 184 VTVLTTGFWPSYKSSDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKFEQ 243
           VTVLTTGFWPSYKS D+NLPSEM+KCVEVFKGFYETKTKHRKLTWIYSLG C+INGKF+Q
Sbjct: 506 VTVLTTGFWPSYKSFDINLPSEMIKCVEVFKGFYETKTKHRKLTWIYSLGTCHINGKFDQ 565

Query: 244 KNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPN 303
           K IELIVSTYQAA LLLFNT+D+LSY+EI+ QLNL+H+DLVRLLHSLSCAKYKILLKEPN
Sbjct: 566 KAIELIVSTYQAAVLLLFNTTDKLSYTEILAQLNLSHEDLVRLLHSLSCAKYKILLKEPN 625

Query: 304 TKTISQSDHFEFNSKFTDRMRRIKIPLPPVDERKKIVEDVDKDRRYAIDAALVRIMKSRK 363
           TKT+SQ+D FEFNSKFTDRMRRIKIPLPPVDERKK+VEDVDKDRRYAIDAA+VRIMKSRK
Sbjct: 626 TKTVSQNDAFEFNSKFTDRMRRIKIPLPPVDERKKVVEDVDKDRRYAIDAAIVRIMKSRK 685

Query: 364 VLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA 416
           VLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA
Sbjct: 686 VLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA 738
Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Regulator of mitotic processes which plays a role during gametogenesis and embryogenesis. Together with SKP1, RBX1 and a F-box protein, it forms a SCF complex. The functional specificity of this complex depends of the type of F-box protein. SCF(UFO) is implicated in floral organ development. SCF(TIR1) is involved in auxin signaling pathway. SCF(COI1) regulates responses to jasmonates. SCF(EID1) and SCF(AFR) are implicated in phytochrome A light signaling. SCF(ADO1/ZTL), SCF(ADO2/LKP2), SCF(ADO3/FKF1) are related to the circadian clock. SCF(ORE9) seems to be involved in senescence. SCF(EBF1/EBF2) may regulate ethylene signaling.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SRZ0|CUL2_ARATH Cullin-2 OS=Arabidopsis thaliana GN=CUL2 PE=1 SV=1 Back     alignment and function description
>sp|P0CH31|CLL1_ARATH Putative cullin-like protein 1 OS=Arabidopsis thaliana GN=At1g43140 PE=3 SV=1 Back     alignment and function description
>sp|A2A432|CUL4B_MOUSE Cullin-4B OS=Mus musculus GN=Cul4b PE=1 SV=1 Back     alignment and function description
>sp|Q13620|CUL4B_HUMAN Cullin-4B OS=Homo sapiens GN=CUL4B PE=1 SV=4 Back     alignment and function description
>sp|Q13619|CUL4A_HUMAN Cullin-4A OS=Homo sapiens GN=CUL4A PE=1 SV=3 Back     alignment and function description
>sp|Q3TCH7|CUL4A_MOUSE Cullin-4A OS=Mus musculus GN=Cul4a PE=1 SV=1 Back     alignment and function description
>sp|Q54NZ5|CUL3_DICDI Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 SV=1 Back     alignment and function description
>sp|Q8LGH4|CUL4_ARATH Cullin-4 OS=Arabidopsis thaliana GN=CUL4 PE=1 SV=1 Back     alignment and function description
>sp|Q9ZVH4|CUL3A_ARATH Cullin-3A OS=Arabidopsis thaliana GN=CUL3A PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query416
297814051 738 ATCUL1 [Arabidopsis lyrata subsp. lyrata 0.992 0.559 0.893 0.0
18411983 738 cullin 1 [Arabidopsis thaliana] gi|79324 0.992 0.559 0.895 0.0
2281115 676 putative cullin-like 1 protein [Arabidop 0.992 0.610 0.895 0.0
386688468 738 cullin 1-like protein A [Prunus avium] 0.992 0.559 0.881 0.0
224107343 742 predicted protein [Populus trichocarpa] 0.978 0.548 0.877 0.0
224123204 744 predicted protein [Populus trichocarpa] 0.978 0.547 0.874 0.0
225432272 744 PREDICTED: cullin-1 isoform 1 [Vitis vin 0.978 0.547 0.874 0.0
255551707 744 Cullin-1, putative [Ricinus communis] gi 0.978 0.547 0.869 0.0
357511189 728 Cullin-like protein1 [Medicago truncatul 0.978 0.559 0.869 0.0
449450670 744 PREDICTED: cullin-1-like [Cucumis sativu 0.978 0.547 0.862 0.0
>gi|297814051|ref|XP_002874909.1| ATCUL1 [Arabidopsis lyrata subsp. lyrata] gi|297320746|gb|EFH51168.1| ATCUL1 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
 Score =  780 bits (2014), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/413 (89%), Positives = 396/413 (95%)

Query: 4   QGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAVGGSSSS 63
           Q  ++ +VQEQVLIRK+IELHDKYM YVT CF NHTLFHKALKEAFEIFCNK V GSSS+
Sbjct: 326 QAANTASVQEQVLIRKVIELHDKYMVYVTECFQNHTLFHKALKEAFEIFCNKTVAGSSSA 385

Query: 64  ELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDR 123
           ELLATFCDNILKKGG+EKLSDEAIE+TLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDR
Sbjct: 386 ELLATFCDNILKKGGSEKLSDEAIEDTLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDR 445

Query: 124 SANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLS 183
           SANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQ SFE+YL NN  A+PGIDL+
Sbjct: 446 SANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQNSFEDYLGNNPAANPGIDLT 505

Query: 184 VTVLTTGFWPSYKSSDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKFEQ 243
           VTVLTTGFWPSYKS D+NLPSEM+KCVEVFKGFYETKTKHRKLTWIYSLG C+INGKF+Q
Sbjct: 506 VTVLTTGFWPSYKSFDINLPSEMIKCVEVFKGFYETKTKHRKLTWIYSLGTCHINGKFDQ 565

Query: 244 KNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPN 303
           K+IELIVSTYQAA LLLFNT+D+L+Y+EI+ QLNL+H+DLVRLLHSLSCAKYKILLKEP+
Sbjct: 566 KSIELIVSTYQAAVLLLFNTTDKLNYTEILAQLNLSHEDLVRLLHSLSCAKYKILLKEPS 625

Query: 304 TKTISQSDHFEFNSKFTDRMRRIKIPLPPVDERKKIVEDVDKDRRYAIDAALVRIMKSRK 363
           TKT+SQ+D FEFNSKFTDRMRRIKIPLPPVDERKK+VEDVDKDRRYAIDAA+VRIMKSRK
Sbjct: 626 TKTVSQTDVFEFNSKFTDRMRRIKIPLPPVDERKKVVEDVDKDRRYAIDAAIVRIMKSRK 685

Query: 364 VLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA 416
           VLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA
Sbjct: 686 VLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA 738

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|18411983|ref|NP_567243.1| cullin 1 [Arabidopsis thaliana] gi|79324981|ref|NP_001031575.1| cullin 1 [Arabidopsis thaliana] gi|79324983|ref|NP_001031576.1| cullin 1 [Arabidopsis thaliana] gi|334186321|ref|NP_001190661.1| cullin 1 [Arabidopsis thaliana] gi|68052236|sp|Q94AH6.1|CUL1_ARATH RecName: Full=Cullin-1 gi|15028161|gb|AAK76704.1| putative cullin 1 protein [Arabidopsis thaliana] gi|22136936|gb|AAM91812.1| putative cullin 1 protein [Arabidopsis thaliana] gi|30524960|emb|CAC85264.1| cullin 1 [Arabidopsis thaliana] gi|222423687|dbj|BAH19810.1| AT4G02570 [Arabidopsis thaliana] gi|332656794|gb|AEE82194.1| cullin 1 [Arabidopsis thaliana] gi|332656795|gb|AEE82195.1| cullin 1 [Arabidopsis thaliana] gi|332656796|gb|AEE82196.1| cullin 1 [Arabidopsis thaliana] gi|332656797|gb|AEE82197.1| cullin 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|2281115|gb|AAC78267.1| putative cullin-like 1 protein [Arabidopsis thaliana] gi|7269017|emb|CAB80750.1| putative cullin-like 1 protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|386688468|gb|AFJ21664.1| cullin 1-like protein A [Prunus avium] Back     alignment and taxonomy information
>gi|224107343|ref|XP_002314453.1| predicted protein [Populus trichocarpa] gi|222863493|gb|EEF00624.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224123204|ref|XP_002330364.1| predicted protein [Populus trichocarpa] gi|222871568|gb|EEF08699.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225432272|ref|XP_002272195.1| PREDICTED: cullin-1 isoform 1 [Vitis vinifera] gi|297736859|emb|CBI26060.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255551707|ref|XP_002516899.1| Cullin-1, putative [Ricinus communis] gi|223543987|gb|EEF45513.1| Cullin-1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357511189|ref|XP_003625883.1| Cullin-like protein1 [Medicago truncatula] gi|355500898|gb|AES82101.1| Cullin-like protein1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|449450670|ref|XP_004143085.1| PREDICTED: cullin-1-like [Cucumis sativus] gi|449517495|ref|XP_004165781.1| PREDICTED: cullin-1-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query416
TAIR|locus:2132377738 CUL1 "cullin 1" [Arabidopsis t 0.992 0.559 0.895 1.8e-199
TAIR|locus:2024755742 CUL2 "cullin 2" [Arabidopsis t 0.985 0.552 0.730 6.3e-163
TAIR|locus:2018645721 AT1G43140 [Arabidopsis thalian 0.634 0.366 0.753 1.2e-151
MGI|MGI:1919834970 Cul4b "cullin 4B" [Mus musculu 0.959 0.411 0.418 4.5e-82
UNIPROTKB|E1BFD5965 CUL4B "Uncharacterized protein 0.959 0.413 0.418 7.4e-82
UNIPROTKB|E2RMN1982 CUL4B "Uncharacterized protein 0.959 0.406 0.418 7.4e-82
UNIPROTKB|K4DI93900 CUL4B "Cullin 4B, isoform CRA_ 0.959 0.443 0.418 7.4e-82
UNIPROTKB|Q13620913 CUL4B "Cullin-4B" [Homo sapien 0.959 0.437 0.418 7.4e-82
FB|FBgn0033260821 Cul-4 "Cullin-4" [Drosophila m 0.959 0.485 0.409 9.4e-82
UNIPROTKB|E1BQK9884 CUL4B "Uncharacterized protein 0.961 0.452 0.413 1.2e-81
TAIR|locus:2132377 CUL1 "cullin 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1931 (684.8 bits), Expect = 1.8e-199, P = 1.8e-199
 Identities = 370/413 (89%), Positives = 395/413 (95%)

Query:     4 QGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAVGGSSSS 63
             Q  ++ +VQEQVLIRK+IELHDKYM YVT CF NHTLFHKALKEAFEIFCNK V GSSS+
Sbjct:   326 QVANTASVQEQVLIRKVIELHDKYMVYVTECFQNHTLFHKALKEAFEIFCNKTVAGSSSA 385

Query:    64 ELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDR 123
             ELLATFCDNILKKGG+EKLSDEAIE+TLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDR
Sbjct:   386 ELLATFCDNILKKGGSEKLSDEAIEDTLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDR 445

Query:   124 SANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLS 183
             SANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQ SFE+YL +N  A+PGIDL+
Sbjct:   446 SANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQNSFEDYLGSNPAANPGIDLT 505

Query:   184 VTVLTTGFWPSYKSSDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKFEQ 243
             VTVLTTGFWPSYKS D+NLPSEM+KCVEVFKGFYETKTKHRKLTWIYSLG C+INGKF+Q
Sbjct:   506 VTVLTTGFWPSYKSFDINLPSEMIKCVEVFKGFYETKTKHRKLTWIYSLGTCHINGKFDQ 565

Query:   244 KNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPN 303
             K IELIVSTYQAA LLLFNT+D+LSY+EI+ QLNL+H+DLVRLLHSLSCAKYKILLKEPN
Sbjct:   566 KAIELIVSTYQAAVLLLFNTTDKLSYTEILAQLNLSHEDLVRLLHSLSCAKYKILLKEPN 625

Query:   304 TKTISQSDHFEFNSKFTDRMRRIKIPLPPVDERKKIVEDVDKDRRYAIDAALVRIMKSRK 363
             TKT+SQ+D FEFNSKFTDRMRRIKIPLPPVDERKK+VEDVDKDRRYAIDAA+VRIMKSRK
Sbjct:   626 TKTVSQNDAFEFNSKFTDRMRRIKIPLPPVDERKKVVEDVDKDRRYAIDAAIVRIMKSRK 685

Query:   364 VLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA 416
             VLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA
Sbjct:   686 VLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA 738
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0031625 "ubiquitin protein ligase binding" evidence=IEA
GO:0000151 "ubiquitin ligase complex" evidence=IPI
GO:0009733 "response to auxin stimulus" evidence=IMP
GO:0009793 "embryo development ending in seed dormancy" evidence=IMP
GO:0005819 "spindle" evidence=IDA
GO:0009524 "phragmoplast" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0000794 "condensed nuclear chromosome" evidence=IDA
GO:0005737 "cytoplasm" evidence=IDA
GO:0009753 "response to jasmonic acid stimulus" evidence=IMP
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=TAS
GO:0010265 "SCF complex assembly" evidence=IPI
GO:0042752 "regulation of circadian rhythm" evidence=RCA;IMP
GO:0005829 "cytosol" evidence=IDA
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0006396 "RNA processing" evidence=RCA
GO:0006486 "protein glycosylation" evidence=RCA
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA
GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA
GO:0007062 "sister chromatid cohesion" evidence=RCA
GO:0009790 "embryo development" evidence=RCA
GO:0009880 "embryonic pattern specification" evidence=RCA
GO:0010072 "primary shoot apical meristem specification" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010431 "seed maturation" evidence=RCA
GO:0010564 "regulation of cell cycle process" evidence=RCA
GO:0043090 "amino acid import" evidence=RCA
GO:0045595 "regulation of cell differentiation" evidence=RCA
GO:0048316 "seed development" evidence=RCA
GO:0048366 "leaf development" evidence=IMP;RCA
GO:0048825 "cotyledon development" evidence=RCA
GO:0051301 "cell division" evidence=RCA
GO:0010087 "phloem or xylem histogenesis" evidence=IMP
TAIR|locus:2024755 CUL2 "cullin 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018645 AT1G43140 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:1919834 Cul4b "cullin 4B" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1BFD5 CUL4B "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RMN1 CUL4B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|K4DI93 CUL4B "Cullin 4B, isoform CRA_e" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q13620 CUL4B "Cullin-4B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
FB|FBgn0033260 Cul-4 "Cullin-4" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|E1BQK9 CUL4B "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q94AH6CUL1_ARATHNo assigned EC number0.89580.99270.5596yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
scaffold_604014.1
annotation not avaliable (738 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
fgenesh2_kg.6__2094__AT5G20570.1
annotation not avaliable (118 aa)
    ••• 0.649
fgenesh2_kg.5__160__AT2G02560.1
annotation not avaliable (1219 aa)
    ••• 0.494

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query416
pfam00888603 pfam00888, Cullin, Cullin family 1e-114
COG5647773 COG5647, COG5647, Cullin, a subunit of E3 ubiquiti 1e-83
smart00182143 smart00182, CULLIN, Cullin 2e-60
pfam1055768 pfam10557, Cullin_Nedd8, Cullin protein neddylatio 5e-29
smart0088468 smart00884, Cullin_Nedd8, Cullin protein neddylati 1e-26
pfam03450103 pfam03450, CO_deh_flav_C, CO dehydrogenase flavopr 0.001
>gnl|CDD|216175 pfam00888, Cullin, Cullin family Back     alignment and domain information 
 Score =  346 bits (888), Expect = e-114
 Identities = 142/314 (45%), Positives = 195/314 (62%), Gaps = 4/314 (1%)

Query: 8   SGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAVGGSSSSELLA 67
           +     +  ++ ++ELHDKY   V   F N  LF  AL +AFE F N     S S+ELLA
Sbjct: 293 AVETDPKDYVQTLLELHDKYDSLVNEAFNNDALFLNALDKAFEEFINS--NSSKSAELLA 350

Query: 68  TFCDNILKKGGNEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSAND 127
            +CD++LKK   + L++E +EE L+K++ L  YI DKD+F +FYRK LA+RLL   SA+D
Sbjct: 351 KYCDSLLKKS-LKGLNEEELEEKLDKIIVLFKYIEDKDVFEKFYRKMLAKRLLNGTSASD 409

Query: 128 DHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHP-GIDLSVTV 186
           D E+ ++ KLKQ+CG QFTSK+E M  D++L++E   SF+ +L NN +    GIDLSV V
Sbjct: 410 DAEKKMIEKLKQECGYQFTSKLERMFKDISLSKELNNSFKNHLENNLDLLSEGIDLSVLV 469

Query: 187 LTTGFWPSYKSSDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKFEQKNI 246
           L+TGFWP+  +   +LP E+ K +E F+ FY  K   RKLTW++SLG+  +  +F  K  
Sbjct: 470 LSTGFWPTLPTEPFSLPEELEKALEKFEEFYSKKHSGRKLTWLHSLGRGELKAEFNDKTY 529

Query: 247 ELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKT 306
           EL VSTYQ A LLLFN  + L+  E+     L+ D L R L SL  AK  +L K P  + 
Sbjct: 530 ELTVSTYQMAVLLLFNDQEELTVEELSEATGLSDDLLRRTLQSLLKAKVLLLTKIPKGEE 589

Query: 307 ISQSDHFEFNSKFT 320
            S +  F  NS FT
Sbjct: 590 FSPNTVFSLNSDFT 603

Length = 603
>gnl|CDD|227934 COG5647, COG5647, Cullin, a subunit of E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|214545 smart00182, CULLIN, Cullin Back     alignment and domain information
>gnl|CDD|204512 pfam10557, Cullin_Nedd8, Cullin protein neddylation domain Back     alignment and domain information
>gnl|CDD|214883 smart00884, Cullin_Nedd8, Cullin protein neddylation domain Back     alignment and domain information
>gnl|CDD|217566 pfam03450, CO_deh_flav_C, CO dehydrogenase flavoprotein C-terminal domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 416
KOG2167661 consensus Cullins [Cell cycle control, cell divisi 100.0
KOG2166725 consensus Cullins [Cell cycle control, cell divisi 100.0
COG5647773 Cullin, a subunit of E3 ubiquitin ligase [Posttran 100.0
KOG2284728 consensus E3 ubiquitin ligase, Cullin 2 component 100.0
KOG2285777 consensus E3 ubiquitin ligase, Cullin 1 component 100.0
PF00888588 Cullin: Cullin family; InterPro: IPR001373 Cullins 100.0
smart00182142 CULLIN Cullin. 100.0
KOG2165765 consensus Anaphase-promoting complex (APC), subuni 99.97
PF1055768 Cullin_Nedd8: Cullin protein neddylation domain; I 99.81
TIGR0161095 phage_O_Nterm phage replication protein O, N-termi 95.6
PF0933952 HTH_IclR: IclR helix-turn-helix domain; InterPro: 94.36
PF1341248 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 94.15
PF1280262 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP 93.98
PF0208283 Rrf2: Transcriptional regulator; InterPro: IPR0009 93.9
PF0104759 MarR: MarR family; InterPro: IPR000835 The MarR-ty 93.03
PF0822057 HTH_DeoR: DeoR-like helix-turn-helix domain; Inter 92.78
PF1346368 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL 92.15
TIGR02337118 HpaR homoprotocatechuate degradation operon regula 91.82
PF0102247 HTH_5: Bacterial regulatory protein, arsR family; 91.18
PRK11512144 DNA-binding transcriptional repressor MarR; Provis 91.12
PF1284061 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_ 90.96
smart0055068 Zalpha Z-DNA-binding domain in adenosine deaminase 90.48
COG3682123 Predicted transcriptional regulator [Transcription 89.49
TIGR02698130 CopY_TcrY copper transport repressor, CopY/TcrY fa 89.16
PF0827955 HTH_11: HTH domain; InterPro: IPR013196 Winged hel 88.82
TIGR01889109 Staph_reg_Sar staphylococcal accessory regulator f 88.67
smart0034691 HTH_ICLR helix_turn_helix isocitrate lyase regulat 88.14
PF0901269 FeoC: FeoC like transcriptional regulator; InterPr 87.99
smart00347101 HTH_MARR helix_turn_helix multiple antibiotic resi 87.09
PF03965115 Penicillinase_R: Penicillinase repressor; InterPro 86.6
PF0197868 TrmB: Sugar-specific transcriptional regulator Trm 86.58
PRK15090257 DNA-binding transcriptional regulator KdgR; Provis 86.25
PRK11920153 rirA iron-responsive transcriptional regulator; Re 86.01
smart0042053 HTH_DEOR helix_turn_helix, Deoxyribose operon repr 85.62
PRK10857164 DNA-binding transcriptional regulator IscR; Provis 85.47
COG3355126 Predicted transcriptional regulator [Transcription 85.36
PRK03573144 transcriptional regulator SlyA; Provisional 85.09
PRK13777185 transcriptional regulator Hpr; Provisional 85.07
PF0470362 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A. 84.54
TIGR02010135 IscR iron-sulfur cluster assembly transcription fa 83.08
PF04492100 Phage_rep_O: Bacteriophage replication protein O ; 82.88
PF05732165 RepL: Firmicute plasmid replication protein (RepL) 82.61
PRK10870176 transcriptional repressor MprA; Provisional 81.92
PHA00738108 putative HTH transcription regulator 81.57
PF1340442 HTH_AsnC-type: AsnC-type helix-turn-helix domain; 81.22
COG1959150 Predicted transcriptional regulator [Transcription 80.25
PF0558472 Sulfolobus_pRN: Sulfolobus plasmid regulatory prot 80.04
>KOG2167 consensus Cullins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=2.3e-84  Score=631.95  Aligned_cols=396  Identities=41%  Similarity=0.712  Sum_probs=374.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhhcCCCCCCChHHHHH
Q 014910           12 QEQVLIRKIIELHDKYMEYVTNCFINH--TLFHKALKEAFEIFCNKAVGGSSSSELLATFCDNILKKGGNEKLSDEAIEE   89 (416)
Q Consensus        12 ~~~~~i~~l~~l~~~~~~l~~~~F~~~--~~f~~~l~~af~~~~N~~~~~~~~~e~La~y~d~~l~~~~~~~~~~~e~~~   89 (416)
                      .++.+|+.++.++++.+-++..||..+  ..|..++++||+.|+|...  .++||+||+|.|.+|+.|. +..++++++.
T Consensus       260 kDk~mVqELL~FK~k~Dii~~~sF~~~v~e~f~~~~~~afe~fink~~--~rpAelIak~~dt~Lr~gn-k~~~d~~l~~  336 (661)
T KOG2167|consen  260 KDKDMVQELLDFKKKVDIIVDESFLKYVAEKFLNSMSKAFETFINKRR--NRPAELIAKYVDTKLRAGN-KETSDEELEF  336 (661)
T ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHhccc--CCHHHHHHHHHHHHHHhcc-ccccchhHHH
Confidence            478999999999999999999999998  9999999999999999765  5799999999999999865 5667888999


Q ss_pred             HHHHHHHHhhccCChhHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCChhhHhHHHHHHHHHHHHHHHHHHHHH
Q 014910           90 TLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEY  169 (416)
Q Consensus        90 ~l~~i~~lf~~l~~KD~F~~~Y~~~La~RLL~~~s~~~~~E~~~i~~Lk~~~G~~~~~kl~~Ml~D~~~S~~l~~~f~~~  169 (416)
                      .++.++.||+|+..||+|+.+|++.||+|||.++|++.|+|.+|+.+|+.+||..||++|++|++|+..|++++..|+++
T Consensus       337 ~~d~i~~lfr~i~gkdvfeA~ykkdLakrLLl~kSAsvdae~~ml~~lk~ecgs~ft~kLegMfkdme~sk~i~~~f~~~  416 (661)
T KOG2167|consen  337 VLDKILVLFRFIHGKDVFEAFYKKDLAKRLLLGKSASVDAEKSMLSKLKLECGSAFTYKLEGMFKDMELSKEINRAFKQS  416 (661)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhccchhhcchhHHHHHhhhhcchHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HhcCCCCCCCcceEEEEeecCCCCCCCCCCccCCHHHHHHHHHHHHHHhhcCCCceEEeccCCceEEEEeEecceeEEEE
Q 014910          170 LSNNQNAHPGIDLSVTVLTTGFWPSYKSSDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKFEQKNIELI  249 (416)
Q Consensus       170 ~~~~~~~~~~~~~~~~VLs~~~WP~~~~~~~~lP~~l~~~~~~f~~~Y~~k~~~R~L~w~~~lg~~~l~~~~~~~~~~l~  249 (416)
                      ...+.....++ +.+.|++.++||.+++.++.||++|..+++-|..||..+|.||+|.|.+++|+|.+++.|..|+.++.
T Consensus       417 ~~~~~~~~~~l-~~v~vlt~~yWpty~~~ev~Lp~em~~~~e~F~~fyl~k~sgrklqW~~~lg~~v~ka~f~~gkkel~  495 (661)
T KOG2167|consen  417 KGANNRLEGNL-LTVNVLTMGYWPTYPPMEVLLPKEMRDCQEIFKKFYLGKHSGRKLQWQDSLGHCVLKAEFKEGKKELQ  495 (661)
T ss_pred             HHhhccCcCCc-eEEEeecccccCCCCchhccCCHHHHHHHHHHHHhccccccCcceeeecCCcchhhhhhccCCchHHH
Confidence            55444333445 99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecCCCCCCCCCCCeEEEccCCCCCcceeeec
Q 014910          250 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSKFTDRMRRIKIP  329 (416)
Q Consensus       250 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~i~~~~~~~lN~~f~~~~~ki~i~  329 (416)
                      +|++|++||++||+.+.+|++||.++|++.+.+|.+.|++|.|+|.++|.+.|.|+.+.+++.|.+|..|+++..||+|+
T Consensus       496 ~slfq~~vll~fn~~~~~s~~ei~~~t~i~d~el~rtlqsl~cgr~rvl~~~pkg~~~~~~~~f~~n~~f~~kl~rikin  575 (661)
T KOG2167|consen  496 VSLFQTLVLLMFNEGEGLSYEEIKESTGIEDIELRRTLQSLACGRARVLQKVPKGKEVEDGDKFIVNDKFTHKLYRIKIN  575 (661)
T ss_pred             HHHHHHhHhhccCCCCcccHHHHHHhccccHHHHHHHHHHHhcccceeeeeCCCCCCCCCCCEEEechhhcchhheehHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCc----hhhhhHHHhHHHhhhhhhceeeeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccc
Q 014910          330 LPPV----DERKKIVEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD  405 (416)
Q Consensus       330 ~~~~----~e~~~~~~~~~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~  405 (416)
                      .+.+    +|.+.+.++|.+||++.||||||||||.||+|+|+.|+.++.++++  |+..+ ++|+|||+||+|||++||
T Consensus       576 qi~~ke~~ee~~~~~e~v~~drqy~idaaivrimk~rk~l~h~~l~~el~~qlk--fpv~~-d~kkriesli~rey~erd  652 (661)
T KOG2167|consen  576 QIQMKETVEENKSTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVTELFNQLK--FPVKP-DLKKRIESLIDREYLERD  652 (661)
T ss_pred             hhhHHHHHHhhhhhHHHHHhhhhHHHHHHHHHHHHHHHhhchhHHHHHHHHhcC--CCCCh-hHHHHHHHHHhHHHhccc
Confidence            8754    4567788999999999999999999999999999999999999997  98888 999999999999999999


Q ss_pred             CCCCCceEecC
Q 014910          406 KENPNMFRYLA  416 (416)
Q Consensus       406 ~~~~~~y~Yia  416 (416)
                       +| +.|.|||
T Consensus       653 -~n-~~y~yva  661 (661)
T KOG2167|consen  653 -DN-NIYNYVA  661 (661)
T ss_pred             -cc-ccccccC
Confidence             44 9999998

>KOG2166 consensus Cullins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5647 Cullin, a subunit of E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2284 consensus E3 ubiquitin ligase, Cullin 2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2285 consensus E3 ubiquitin ligase, Cullin 1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00888 Cullin: Cullin family; InterPro: IPR001373 Cullins are a family of hydrophobic proteins that act as scaffolds for ubiquitin ligases (E3) Back     alignment and domain information
>smart00182 CULLIN Cullin Back     alignment and domain information
>KOG2165 consensus Anaphase-promoting complex (APC), subunit 2 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10557 Cullin_Nedd8: Cullin protein neddylation domain; InterPro: IPR019559 This is the neddylation site of cullin proteins, which are a family of structurally related proteins containing an evolutionarily conserved cullin domain Back     alignment and domain information
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain Back     alignment and domain information
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities Back     alignment and domain information
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A Back     alignment and domain information
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B Back     alignment and domain information
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp Back     alignment and domain information
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance Back     alignment and domain information
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism Back     alignment and domain information
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A Back     alignment and domain information
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR Back     alignment and domain information
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities Back     alignment and domain information
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional Back     alignment and domain information
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B Back     alignment and domain information
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases Back     alignment and domain information
>COG3682 Predicted transcriptional regulator [Transcription] Back     alignment and domain information
>TIGR02698 CopY_TcrY copper transport repressor, CopY/TcrY family Back     alignment and domain information
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets Back     alignment and domain information
>TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family Back     alignment and domain information
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation Back     alignment and domain information
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif Back     alignment and domain information
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein Back     alignment and domain information
>PF03965 Penicillinase_R: Penicillinase repressor; InterPro: IPR005650 Proteins in this entry are transcriptional regulators found in a variety of bacteria and a small number of archaea Back     alignment and domain information
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis Back     alignment and domain information
>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional Back     alignment and domain information
>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed Back     alignment and domain information
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor Back     alignment and domain information
>PRK10857 DNA-binding transcriptional regulator IscR; Provisional Back     alignment and domain information
>COG3355 Predicted transcriptional regulator [Transcription] Back     alignment and domain information
>PRK03573 transcriptional regulator SlyA; Provisional Back     alignment and domain information
>PRK13777 transcriptional regulator Hpr; Provisional Back     alignment and domain information
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A Back     alignment and domain information
>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR Back     alignment and domain information
>PF04492 Phage_rep_O: Bacteriophage replication protein O ; InterPro: IPR006497 This entry is represented by the N-terminal domain of Bacteriophage lambda, GpO Back     alignment and domain information
>PF05732 RepL: Firmicute plasmid replication protein (RepL); InterPro: IPR008813 This entry consists of proteins thought to be involved in plasmid replication Back     alignment and domain information
>PRK10870 transcriptional repressor MprA; Provisional Back     alignment and domain information
>PHA00738 putative HTH transcription regulator Back     alignment and domain information
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B Back     alignment and domain information
>COG1959 Predicted transcriptional regulator [Transcription] Back     alignment and domain information
>PF05584 Sulfolobus_pRN: Sulfolobus plasmid regulatory protein; InterPro: IPR008848 This family consists of several plasmid regulatory proteins from the extreme thermophilic and acidophilic archaea Sulfolobus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query416
4a0l_E726 Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp 2e-87
4a0c_C741 Structure Of The Cand1-Cul4b-Rbx1 Complex Length = 2e-87
2hye_C759 Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Compl 2e-86
4a0k_A742 Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp 3e-86
1u6g_A776 Crystal Structure Of The Cand1-Cul1-Roc1 Complex Le 5e-63
1ldj_A760 Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiqu 5e-63
1ldk_B366 Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiqu 4e-59
3rtr_A368 A Ring E3-Substrate Complex Poised For Ubiquitin-Li 6e-57
4f52_A282 Structure Of A Glomulin-Rbx1-Cul1 Complex Length = 1e-37
3dpl_C382 Structural Insights Into Nedd8 Activation Of Cullin 7e-33
3dqv_C382 Structural Insights Into Nedd8 Activation Of Cullin 5e-29
2do7_A101 Solution Structure Of The Winged Helix-Turn-Helix M 2e-18
1iuy_A92 Solution Structure Of The Cullin-3 Homologue Length 3e-14
3tdu_C77 N-Terminal Acetylation Acts As An Avidity Enhancer 2e-13
3o2p_E88 A Dual E3 Mechanism For Rub1 Ligation To Cdc53: Dcn 2e-07
3o6b_B76 A Dual E3 Mechanism For Rub1 Ligation To Cdc53: Dcn 4e-07
>pdb|4A0L|E Chain E, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic Site Containing Dna-Duplex Length = 726 Back     alignment and structure 
Iteration: 1

 Score =  319 bits (818), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 171/409 (41%), Positives = 252/409 (61%), Gaps = 10/409 (2%)
Query: 12  QEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAVGGSSSSELLATFCD 71
           +++ +++++++  DK    +  CF+ +  F  A+KEAFE F NK    +  +EL+A + D
Sbjct: 324 KDKTMVQELLDFKDKVDHIIDICFLKNEKFINAMKEAFETFINKR--PNKPAELIAKYVD 381
Query: 72  NILKKGGNEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHER 131
           + L+  GN++ +DE +E+ L+K++ +  +I  KD+F  FY+K LA+RLL  +SA+ D E+
Sbjct: 382 SKLR-AGNKEATDEELEKMLDKIMIIFRFIYGKDVFEAFYKKDLAKRLLVGKSASVDAEK 440
Query: 132 SILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGF 191
           S+L+KLK +CG  FTSK+EGM  D+ L+++    F++Y+ N QN    I+L+V +LT G+
Sbjct: 441 SMLSKLKHECGAAFTSKLEGMFKDMELSKDIMIQFKQYMQN-QNVPGNIELTVNILTMGY 499
Query: 192 WPSYKSSDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKFEQKNIELIVS 251
           WP+Y   +++LP EMVK  E+FK FY  K   RKL W  +LG C +  +F++   EL VS
Sbjct: 500 WPTYVPMEVHLPPEMVKLQEIFKTFYLGKHSGRKLQWQSTLGHCVLKAEFKEGKKELQVS 559
Query: 252 TYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSD 311
            +Q   LL+FN  +  S  EI     +   +L R L SL+C K ++L K P  K I   D
Sbjct: 560 LFQTLVLLMFNEGEEFSLEEIKQATGIEDGELRRTLQSLACGKARVLAKNPKGKDIEDGD 619
Query: 312 HFEFNSKFTDRMRRIKIPL----PPVDERKKIVEDVDKDRRYAIDAALVRIMKSRKVLGH 367
            F  N  F  ++ RIKI        V+E+    E V +DR+Y IDAA+VRIMK RK L H
Sbjct: 620 KFICNDDFKHKLFRIKINQIQMKETVEEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSH 679
Query: 368 QQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA 416
             LVSE   QL    KP    +KKR+E LI RDY+ERDKENPN + Y+A
Sbjct: 680 NLLVSEVYNQLKFPVKP--ADLKKRIESLIDRDYMERDKENPNQYNYIA 726
>pdb|4A0C|C Chain C, Structure Of The Cand1-Cul4b-Rbx1 Complex Length = 741 Back     alignment and structure
>pdb|2HYE|C Chain C, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex Length = 759 Back     alignment and structure
>pdb|4A0K|A Chain A, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic Site Containing Dna-Duplex Length = 742 Back     alignment and structure
>pdb|1U6G|A Chain A, Crystal Structure Of The Cand1-Cul1-Roc1 Complex Length = 776 Back     alignment and structure
>pdb|1LDJ|A Chain A, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin Ligase Complex Length = 760 Back     alignment and structure
>pdb|1LDK|B Chain B, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin Ligase Complex Length = 366 Back     alignment and structure
>pdb|3RTR|A Chain A, A Ring E3-Substrate Complex Poised For Ubiquitin-Like Protein Transfer: Structural Insights Into Cullin-Ring Ligases Length = 368 Back     alignment and structure
>pdb|4F52|A Chain A, Structure Of A Glomulin-Rbx1-Cul1 Complex Length = 282 Back     alignment and structure
>pdb|3DPL|C Chain C, Structural Insights Into Nedd8 Activation Of Cullin-Ring Ligases: Conformational Control Of Conjugation Length = 382 Back     alignment and structure
>pdb|3DQV|C Chain C, Structural Insights Into Nedd8 Activation Of Cullin-Ring Ligases: Conformational Control Of Conjugation Length = 382 Back     alignment and structure
>pdb|2DO7|A Chain A, Solution Structure Of The Winged Helix-Turn-Helix Motif Of Human Cul-4b Length = 101 Back     alignment and structure
>pdb|1IUY|A Chain A, Solution Structure Of The Cullin-3 Homologue Length = 92 Back     alignment and structure
>pdb|3TDU|C Chain C, N-Terminal Acetylation Acts As An Avidity Enhancer Within An Interconnected Multiprotein Complex: Structure Of A Human Cul1whb- Dcn1p-Acetylated Ubc12n Complex Length = 77 Back     alignment and structure
>pdb|3O2P|E Chain E, A Dual E3 Mechanism For Rub1 Ligation To Cdc53: Dcn1(P)-Cdc53(Whb) Length = 88 Back     alignment and structure
>pdb|3O6B|B Chain B, A Dual E3 Mechanism For Rub1 Ligation To Cdc53: Dcn1(P)-Cdc53(Whb) Low Resolution Length = 76 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query416
1ldj_A760 Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc 1e-134
2hye_C759 Cullin-4A, CUL-4A; beta propeller, ring finger, zi 1e-129
3dpl_C382 Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus int 1e-115
1iuy_A92 Cullin-3 homologue; winged helix, structural genom 4e-31
3tdu_C77 Cullin-1, CUL-1; E2:E3, ligase-protein binding com 3e-30
2do7_A101 Cullin-4B, CUL-4B; helix-turn-helix motif, structu 2e-28
3o2p_E88 Cell division control protein 53; ligase, cell cyc 4e-28
4ap2_B410 Cullin-3, CUL-3; ubiquitination, E3 ligase, cell c 1e-11
4a64_A354 Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo 7e-09
4eoz_B364 Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, pro 9e-09
2wzk_A391 Cullin-5, CUL-5; UBL conjugation pathway, HIV, pho 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-07
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A Length = 760 Back     alignment and structure
 Score =  402 bits (1033), Expect = e-134
 Identities = 141/429 (32%), Positives = 237/429 (55%), Gaps = 16/429 (3%)

Query: 1   MLMQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIF------CN 54
            + + G +     ++ ++ ++++H KY   V + F N   F  AL +A   F        
Sbjct: 335 AIEKCGEAALNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINNNAVTK 394

Query: 55  KAVGGSSSSELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKK 114
            A   S S ELLA +CD++LKK  ++   +  +E+TL +V+ +  YI DKD+F +FY K 
Sbjct: 395 MAQSSSKSPELLARYCDSLLKKS-SKNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKM 453

Query: 115 LARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQ 174
           LA+RL+   SA+DD E S+++KLKQ CG ++TSK++ M  D+ ++++    F+++L+N++
Sbjct: 454 LAKRLVHQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNSE 513

Query: 175 NAHPGIDLSVTVLTTGFWPSYKSSDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQ 234
                +D S+ VL++G WP  +S    LPSE+ +  + F  FY ++   RKLTW+Y L +
Sbjct: 514 P--LDLDFSIQVLSSGSWPFQQSCTFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSK 571

Query: 235 CNINGKFEQKNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAK 294
             +     +    L  ST+Q A LL +NT D  +  ++     +  D L ++L  L  +K
Sbjct: 572 GELVTNCFKNRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLKSK 631

Query: 295 YKILLKEPNTKT---ISQSDHFEFNSKFTDRMRRIKIPLP----PVDERKKIVEDVDKDR 347
             +L  E        +      +    + ++  R+ I +P       E++   +++++DR
Sbjct: 632 LLVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDR 691

Query: 348 RYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKE 407
           +  I AA+VRIMK RKVL HQQL+ E + QLS  FKP +  IKK ++ LI ++YLER   
Sbjct: 692 KLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDG 751

Query: 408 NPNMFRYLA 416
             + + YLA
Sbjct: 752 EKDTYSYLA 760
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E* Length = 759 Back     alignment and structure
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C Length = 382 Back     alignment and structure
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34 Length = 92 Back     alignment and structure
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C Length = 77 Back     alignment and structure
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 101 Back     alignment and structure
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B Length = 88 Back     alignment and structure
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens} PDB: 4apf_B Length = 410 Back     alignment and structure
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens} Length = 354 Back     alignment and structure
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B Length = 364 Back     alignment and structure
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus} Length = 391 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query416
1ldj_A760 Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc 100.0
2hye_C759 Cullin-4A, CUL-4A; beta propeller, ring finger, zi 100.0
3dpl_C382 Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus int 100.0
3o2p_E88 Cell division control protein 53; ligase, cell cyc 99.94
3tdu_C77 Cullin-1, CUL-1; E2:E3, ligase-protein binding com 99.94
1iuy_A92 Cullin-3 homologue; winged helix, structural genom 99.93
2do7_A101 Cullin-4B, CUL-4B; helix-turn-helix motif, structu 99.93
4ap2_B410 Cullin-3, CUL-3; ubiquitination, E3 ligase, cell c 98.82
2wzk_A391 Cullin-5, CUL-5; UBL conjugation pathway, HIV, pho 97.94
1wi9_A72 Protein C20ORF116 homolog; helix-turn-helix motif, 92.05
3cuo_A99 Uncharacterized HTH-type transcriptional regulato; 90.7
2jt1_A77 PEFI protein; solution structure, winged helix-tur 90.58
1qgp_A77 Protein (double stranded RNA adenosine deaminase); 90.37
3lmm_A583 Uncharacterized protein; multi-domained alpha-beta 90.31
2dk5_A91 DNA-directed RNA polymerase III 39 kDa polypeptide 89.89
3tgn_A146 ADC operon repressor ADCR; helix-turn-helix, trans 89.71
3jth_A98 Transcription activator HLYU; transcription factor 89.7
3g3z_A145 NMB1585, transcriptional regulator, MARR family; t 89.47
2fu4_A83 Ferric uptake regulation protein; DNA binding doma 89.41
3hsr_A140 HTH-type transcriptional regulator SARZ; helix-tur 89.25
1sfx_A109 Conserved hypothetical protein AF2008; structural 89.08
2htj_A81 P fimbrial regulatory protein KS71A; winged helix- 88.97
3ech_A142 MEXR, multidrug resistance operon repressor; winge 88.92
1y0u_A96 Arsenical resistance operon repressor, putative; s 88.79
3nrv_A148 Putative transcriptional regulator (MARR/EMRR FAM; 88.32
1qbj_A81 Protein (double-stranded RNA specific adenosine D 88.31
3cdh_A155 Transcriptional regulator, MARR family; helix-turn 88.22
4hbl_A149 Transcriptional regulator, MARR family; HTH, trans 88.05
2frh_A127 SARA, staphylococcal accessory regulator A; winged 87.79
3r0a_A123 Putative transcriptional regulator; structural gen 87.66
3oop_A143 LIN2960 protein; protein structure initiative, PSI 87.61
1xn7_A78 Hypothetical protein YHGG; alpha+beta, GFT structu 87.61
2fbh_A146 Transcriptional regulator PA3341; MARR, transcript 87.46
3k0l_A162 Repressor protein; helix-turn-helix, structural ge 87.36
2gxg_A146 146AA long hypothetical transcriptional regulator; 87.29
2qww_A154 Transcriptional regulator, MARR family; YP_013417. 87.24
3eco_A139 MEPR; mutlidrug efflux pump regulator winged helix 87.2
3bpv_A138 Transcriptional regulator; MARR, DNA binding, tran 87.01
1oyi_A82 Double-stranded RNA-binding protein; (alpha+beta) 86.88
2k02_A87 Ferrous iron transport protein C; FEOC, iron-sulfu 86.8
3bro_A141 Transcriptional regulator; helix_TURN_helix, multi 86.54
2d1h_A109 ST1889, 109AA long hypothetical transcriptional re 86.52
3bj6_A152 Transcriptional regulator, MARR family; helix-turn 86.44
2fa5_A162 Transcriptional regulator MARR/EMRR family; multip 86.27
3pqk_A102 Biofilm growth-associated repressor; helix-turn-he 86.26
1jgs_A138 Multiple antibiotic resistance protein MARR; trans 86.25
1u2w_A122 CADC repressor, cadmium efflux system accessory pr 86.1
3e6m_A161 MARR family transcriptional regulator; APC88769, s 86.1
3bja_A139 Transcriptional regulator, MARR family, putative; 85.78
1xmk_A79 Double-stranded RNA-specific adenosine deaminase; 85.71
1tbx_A99 ORF F-93, hypothetical 11.0 kDa protein; sulfolobu 85.51
3deu_A166 Transcriptional regulator SLYA; MARR, WING-helix, 85.28
2pex_A153 Transcriptional regulator OHRR; transcription regu 85.17
3bdd_A142 Regulatory protein MARR; putative multiple antibio 85.15
2nnn_A140 Probable transcriptional regulator; structural gen 85.07
2nyx_A168 Probable transcriptional regulatory protein, RV14; 84.84
1lj9_A144 Transcriptional regulator SLYA; HTH DNA binding pr 84.8
2hr3_A147 Probable transcriptional regulator; MCSG, structur 84.71
3s2w_A159 Transcriptional regulator, MARR family; structural 84.67
3cjn_A162 Transcriptional regulator, MARR family; silicibact 84.58
1sfu_A75 34L protein; protein/Z-DNA complex, DNA binding pr 84.3
2bv6_A142 MGRA, HTH-type transcriptional regulator MGRA; mul 84.28
1bja_A95 Transcription regulatory protein MOTA; activation 84.28
2rdp_A150 Putative transcriptional regulator MARR; PFAM PF01 84.19
2a61_A145 Transcriptional regulator TM0710; APC4350, MCSG, m 84.13
2eth_A154 Transcriptional regulator, putative, MAR family; M 84.12
2e1c_A171 Putative HTH-type transcriptional regulator PH151; 84.07
1p6r_A82 Penicillinase repressor; transcription regulation, 83.96
1z91_A147 Organic hydroperoxide resistance transcriptional; 83.69
1s3j_A155 YUSO protein; structural genomics, MARR transcript 83.66
1xn7_A78 Hypothetical protein YHGG; alpha+beta, GFT structu 83.63
1ku9_A152 Hypothetical protein MJ223; putative transcription 83.55
3fm5_A150 Transcriptional regulator; MCSG, PF04017, PSI, MAR 83.49
3jw4_A148 Transcriptional regulator, MARR/EMRR family; DNA-b 83.46
2fbi_A142 Probable transcriptional regulator; MARR, APC5816, 83.26
2l02_A82 Uncharacterized protein; structural genomics, nort 83.07
3f3x_A144 Transcriptional regulator, MARR family, putative; 82.93
4b8x_A147 SCO5413, possible MARR-transcriptional regulator; 82.78
4aik_A151 Transcriptional regulator SLYA; transcription, tra 82.1
3kp7_A151 Transcriptional regulator TCAR; multiple drug resi 82.01
1ub9_A100 Hypothetical protein PH1061; helix-turn-helix moti 81.95
2v79_A135 DNA replication protein DNAD; primosome, DNA-bindi 81.92
3nqo_A189 MARR-family transcriptional regulator; structural 81.84
3boq_A160 Transcriptional regulator, MARR family; MARR famil 81.7
2oqg_A114 Possible transcriptional regulator, ARSR family P; 81.68
1r1u_A106 CZRA, repressor protein; zinc, DNA binding, transc 81.48
3lwf_A159 LIN1550 protein, putative transcriptional regulato 81.28
1p6r_A82 Penicillinase repressor; transcription regulation, 81.2
2fxa_A207 Protease production regulatory protein HPR; protea 81.2
2k4b_A99 Transcriptional regulator; DNA binding protein, wi 81.12
3t8r_A143 Staphylococcus aureus CYMR; transcriptional regula 80.76
2k02_A87 Ferrous iron transport protein C; FEOC, iron-sulfu 80.21
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A Back     alignment and structure
Probab=100.00  E-value=5.6e-88  Score=720.23  Aligned_cols=402  Identities=35%  Similarity=0.605  Sum_probs=377.0

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC------CCCCChHHHHHHHHHHHhhcCCCCCCC
Q 014910           10 AVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKA------VGGSSSSELLATFCDNILKKGGNEKLS   83 (416)
Q Consensus        10 ~~~~~~~i~~l~~l~~~~~~l~~~~F~~~~~f~~~l~~af~~~~N~~------~~~~~~~e~La~y~d~~l~~~~~~~~~   83 (416)
                      +.+|..||+.|+++|++|+.++..||++|+.|..++++||+.|+|.+      .+..++||+||+|||.+||++. ++.+
T Consensus       344 ~~~~~~~V~~ll~l~~k~~~lv~~~F~~d~~f~~al~~af~~~iN~~~~~~~~~~~~~~~E~la~y~D~~Lkk~~-k~~~  422 (760)
T 1ldj_A          344 LNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINNNAVTKMAQSSSKSPELLARYCDSLLKKSS-KNPE  422 (760)
T ss_dssp             GGCHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHSSHHHHHHTSTTHHHHHHHHHHHHHHBCCS-SCCC
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCccccccccccccHHHHHHHhHHHHhCCC-CCCC
Confidence            47899999999999999999999999999999999999999999986      2346899999999999999865 4567


Q ss_pred             hHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCChhhHhHHHHHHHHHHHHHHH
Q 014910           84 DEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQ  163 (416)
Q Consensus        84 ~~e~~~~l~~i~~lf~~l~~KD~F~~~Y~~~La~RLL~~~s~~~~~E~~~i~~Lk~~~G~~~~~kl~~Ml~D~~~S~~l~  163 (416)
                      ++|++..|++++.||+|+++||+|+.+|+++||+|||.+++.+.+.|+.||++|+.+||.+||++|++|++|+..|++++
T Consensus       423 e~e~e~~L~~i~~lf~~i~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~~Lk~~~G~~~t~kle~M~~Di~~S~~l~  502 (760)
T 1ldj_A          423 EAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRLVHQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLN  502 (760)
T ss_dssp             HHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHTTCBSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCCCcceEEEEeecCCCCCCCCCCccCCHHHHHHHHHHHHHHhhcCCCceEEeccCCceEEEEeEecc
Q 014910          164 TSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYKSSDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKFEQ  243 (416)
Q Consensus       164 ~~f~~~~~~~~~~~~~~~~~~~VLs~~~WP~~~~~~~~lP~~l~~~~~~f~~~Y~~k~~~R~L~w~~~lg~~~l~~~~~~  243 (416)
                      ..|++++.++  ...+++|+|.|||+++||..+..++.+|++|..+++.|++||..+|+||+|+|.|++|+|+|+++|++
T Consensus       503 ~~f~~~~~~~--~~~~~~~~v~VLs~~~WP~~~~~~~~lP~~l~~~~~~F~~fY~~~~~~RkL~W~~~lg~~~l~~~~~~  580 (760)
T 1ldj_A          503 EQFKKHLTNS--EPLDLDFSIQVLSSGSWPFQQSCTFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTNCFK  580 (760)
T ss_dssp             HHHHHHHTTT--CCCSSEEEEEEEETTTSCCCCCSCCCCCGGGHHHHHHHHHHTTTTCTTCCEEECGGGCCCEEEESSSS
T ss_pred             HHHHHHHhcc--cCCCCCeeEEecCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCCCeEEEecccccEEEEEEECC
Confidence            9999987641  23578999999999999998878899999999999999999999999999999999999999999998


Q ss_pred             eeEEEEEcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecCC-----CCCCCCCCCeEEEccC
Q 014910          244 KNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP-----NTKTISQSDHFEFNSK  318 (416)
Q Consensus       244 ~~~~l~~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~-----~~~~i~~~~~~~lN~~  318 (416)
                      +++++.||++||+||++||+.+.+|+++|++.||++.++++++|.+|+  +.+||.+.|     +++.+.+++.|++|.+
T Consensus       581 ~~~~l~vs~~Qa~iLllFn~~~~~t~~ei~~~t~i~~~~l~r~L~~l~--k~~iL~~~~~~~~~~~~~~~~~~~f~lN~~  658 (760)
T 1ldj_A          581 NRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILL--KSKLLVLEDENANVDEVELKPDTLIKLYLG  658 (760)
T ss_dssp             SCCEEECCHHHHHHHHGGGSSSEEEHHHHHHHTCCCHHHHHHHHHHHH--HTTTEECSCTTCCTTTCCCCTTCEEEECSS
T ss_pred             ceEEEEEcHHHHHHHHHhcCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCcceeCCCccccccCCCCCCCEEEeecc
Confidence            999999999999999999999999999999999999999999999997  678998554     7888999999999999


Q ss_pred             CCCCcceeeecCCCch----hhhhHHHhHHHhhhhhhceeeeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHH
Q 014910          319 FTDRMRRIKIPLPPVD----ERKKIVEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRME  394 (416)
Q Consensus       319 f~~~~~ki~i~~~~~~----e~~~~~~~~~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie  394 (416)
                      |++++.||+|+.+...    |...+.+.+.+||+..||||||||||++|+|+|++|+.+|+++++++|.|++.+||+|||
T Consensus       659 F~~k~~ri~i~~~~~~e~~~e~~~~~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~Ie  738 (760)
T 1ldj_A          659 YKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCID  738 (760)
T ss_dssp             CCCSSSSBCCCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred             ccCCceEEEecCccccccchhhhhHHHHHHHHHHhHheeeehhhhhccCCCcHHHHHHHHHHHHhccCCCCHHHHHHHHH
Confidence            9999999999865432    344567789999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccccccCCCCCceEecC
Q 014910          395 DLITRDYLERDKENPNMFRYLA  416 (416)
Q Consensus       395 ~Liereyi~r~~~~~~~y~Yia  416 (416)
                      +||+||||+|+++|+++|+|+|
T Consensus       739 ~LIereYl~R~~~~~~~y~YlA  760 (760)
T 1ldj_A          739 ILIEKEYLERVDGEKDTYSYLA  760 (760)
T ss_dssp             HHHHTTSEEECSSSTTEEEECC
T ss_pred             HHhhccceeeCCCCCcceeeCC
Confidence            9999999999999999999998
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E* Back     alignment and structure
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C Back     alignment and structure
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B Back     alignment and structure
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C Back     alignment and structure
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34 Back     alignment and structure
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens} Back     alignment and structure
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus} Back     alignment and structure
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47 Back     alignment and structure
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12} Back     alignment and structure
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2} Back     alignment and structure
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19 Back     alignment and structure
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae} Back     alignment and structure
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85 Back     alignment and structure
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae} Back     alignment and structure
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus} Back     alignment and structure
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B} Back     alignment and structure
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli} Back     alignment and structure
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A Back     alignment and structure
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50 Back     alignment and structure
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73 Back     alignment and structure
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A Back     alignment and structure
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5 Back     alignment and structure
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP} Back     alignment and structure
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A Back     alignment and structure
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3} Back     alignment and structure
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis} Back     alignment and structure
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D Back     alignment and structure
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei} Back     alignment and structure
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua} Back     alignment and structure
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62 Back     alignment and structure
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 Back     alignment and structure
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP} Back     alignment and structure
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A Back     alignment and structure
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str} Back     alignment and structure
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0 Back     alignment and structure
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A* Back     alignment and structure
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19 Back     alignment and structure
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp} Back     alignment and structure
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28 Back     alignment and structure
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50 Back     alignment and structure
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3} Back     alignment and structure
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris} Back     alignment and structure
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A Back     alignment and structure
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28 Back     alignment and structure
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A Back     alignment and structure
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi} Back     alignment and structure
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus} Back     alignment and structure
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19 Back     alignment and structure
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48 Back     alignment and structure
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28 Back     alignment and structure
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A Back     alignment and structure
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis} Back     alignment and structure
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} Back     alignment and structure
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis} Back     alignment and structure
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28 Back     alignment and structure
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28 Back     alignment and structure
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei} Back     alignment and structure
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3} Back     alignment and structure
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19 Back     alignment and structure
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28 Back     alignment and structure
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A Back     alignment and structure
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus} Back     alignment and structure
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28 Back     alignment and structure
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28 Back     alignment and structure
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B Back     alignment and structure
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A* Back     alignment and structure
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28 Back     alignment and structure
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62 Back     alignment and structure
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36 Back     alignment and structure
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii} Back     alignment and structure
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0 Back     alignment and structure
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28 Back     alignment and structure
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} Back     alignment and structure
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus} Back     alignment and structure
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor} Back     alignment and structure
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A* Back     alignment and structure
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A Back     alignment and structure
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28 Back     alignment and structure
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis} Back     alignment and structure
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile} Back     alignment and structure
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3} Back     alignment and structure
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP} Back     alignment and structure
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A Back     alignment and structure
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua} Back     alignment and structure
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B Back     alignment and structure
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28 Back     alignment and structure
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp} Back     alignment and structure
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A Back     alignment and structure
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 416
d2hyec3273 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapien 1e-92
d1ldja3276 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Huma 3e-87
d1iuya_92 a.4.5.34 (A:) Cullin-3 homologue {Mouse (Mus muscu 2e-31
d1ldja190 a.4.5.34 (A:687-776) Anaphase promoting complex (A 4e-31
d2hyec184 a.4.5.34 (C:676-759) Cullin-4A {Human (Homo sapien 2e-29
d2hyec2347 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapie 8e-09
d1ldja2394 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Hum 5e-08
>d2hyec3 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Length = 273 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Cullin homology domain
superfamily: Cullin homology domain
family: Cullin homology domain
domain: Cullin-4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  278 bits (711), Expect = 1e-92
 Identities = 109/274 (39%), Positives = 169/274 (61%), Gaps = 2/274 (0%)

Query: 60  SSSSELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRL 119
           +  +EL+A   D+ L+ G N++ +DE +E TL+K++ L  +I  KD+F  FY+K LA+RL
Sbjct: 1   NKPAELIAKHVDSKLRAG-NKEATDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRL 59

Query: 120 LFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPG 179
           L  +SA+ D E+S+L+KLK +CG  FTSK+EGM  D+ L+++    F++++ N  ++ P 
Sbjct: 60  LVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQHMQNQSDSGP- 118

Query: 180 IDLSVTVLTTGFWPSYKSSDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNING 239
           IDL+V +LT G+WP+Y   +++L  EM+K  EVFK FY  K   RKL W  +LG   +  
Sbjct: 119 IDLTVNILTMGYWPTYTPMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHAVLKA 178

Query: 240 KFEQKNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILL 299
           +F++   E  VS +Q   LL+FN  D  S+ EI     +   +L R L SL+C K ++L+
Sbjct: 179 EFKEGKKEFQVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKARVLI 238

Query: 300 KEPNTKTISQSDHFEFNSKFTDRMRRIKIPLPPV 333
           K P  K +   D F FN +F  ++ RIKI    +
Sbjct: 239 KSPKGKEVEDGDKFIFNGEFKHKLFRIKINQIQM 272
>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 276 Back     information, alignment and structure
>d1iuya_ a.4.5.34 (A:) Cullin-3 homologue {Mouse (Mus musculus) [TaxId: 10090]} Length = 92 Back     information, alignment and structure
>d1ldja1 a.4.5.34 (A:687-776) Anaphase promoting complex (APC) {Human (Homo sapiens) [TaxId: 9606]} Length = 90 Back     information, alignment and structure
>d2hyec1 a.4.5.34 (C:676-759) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Length = 84 Back     information, alignment and structure
>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Length = 347 Back     information, alignment and structure
>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 394 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query416
d2hyec3273 Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1ldja3276 Cullin homolog 1, cul-1 {Human (Homo sapiens) [Tax 100.0
d1ldja190 Anaphase promoting complex (APC) {Human (Homo sapi 99.93
d2hyec184 Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} 99.92
d1iuya_92 Cullin-3 homologue {Mouse (Mus musculus) [TaxId: 1 99.91
d1ldja2394 Cullin homolog 1, Cul-1 {Human (Homo sapiens) [Tax 97.91
d1mkma175 Transcriptional regulator IclR, N-terminal domain 92.71
d1lnwa_141 MexR repressor {Pseudomonas aeruginosa [TaxId: 287 92.2
d1lj9a_144 Transcriptional regulator SlyA {Enterococcus faeca 91.83
d2a61a1139 Transcriptional regulator TM0710 {Thermotoga marit 91.39
d1wi9a_72 Hypothetical protein C20orf116 homolog {Mouse (Mus 90.61
d1ylfa1138 Hypothetical protein BC1842 {Bacillus cereus [TaxI 90.44
d2etha1140 Putative transcriptional regulator TM0816 {Thermot 90.41
d1sfxa_109 Hypothetical protein AF2008 {Archaeoglobus fulgidu 90.22
d1z91a1137 Organic hydroperoxide resistance transcriptional r 89.91
d2frha1115 Pleiotropic regulator of virulence genes, SarA {St 89.54
d1p6ra_82 Penicillinase repressor BlaI {Bacillus licheniform 88.98
d1s3ja_143 Putative transcriptional regulator YusO {Bacillus 88.71
d1dpua_69 C-terminal domain of RPA32 {Human (Homo sapiens) [ 88.64
d1jgsa_138 Multiple antibiotic resistance repressor, MarR {Es 88.38
d2d1ha1109 Hypothetical transcriptional regulator ST1889 {Sul 88.38
d1ub9a_100 Hypothetical protein PH1061 {Archaeon Pyrococcus h 87.97
d1p4xa2125 Staphylococcal accessory regulator A homolog, SarS 87.96
d1p4xa1125 Staphylococcal accessory regulator A homolog, SarS 87.68
d1i1ga160 LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} 87.58
d2bv6a1136 Transcriptional regulator MgrA {Staphylococcus aur 87.49
d2fxaa1162 Protease production regulatory protein Hpr {Bacill 87.28
d1hsja1115 Staphylococcal accessory regulator A homolog, SarR 87.28
d2fbia1136 Probable transcriptional regulator PA4135 {Pseudom 86.89
d2cg4a163 Regulatory protein AsnC {Escherichia coli [TaxId: 86.78
d3broa1135 Transcriptional regulator OEOE1854 {Oenococcus oen 86.26
d2cfxa163 Transcriptional regulator LrpC {Bacillus subtilis 86.17
d2cyya160 Putative transcriptional regulator PH1519 {Archaeo 85.9
d1biaa163 Biotin repressor, N-terminal domain {Escherichia c 85.81
d2g9wa1122 Hypothetical protein Rv1846c {Mycobacterium tuberc 85.57
d3deua1140 Transcriptional regulator SlyA {Salmonella typhimu 85.55
d2hr3a1145 Probable transcriptional regulator PA3067 {Pseudom 84.98
d2fbha1137 Transcriptional regulator PA3341 {Pseudomonas aeru 84.81
d1ku9a_151 DNA-binding protein Mj223 {Archaeon Methanococcus 84.79
d1okra_120 Methicillin resistance regulatory protein MecI {St 84.13
d1u2wa1108 Cadmium efflux system accessory protein CadC {Stap 84.05
d1sd4a_122 Penicillinase repressor BlaI {Staphylococcus aureu 82.78
d1z05a171 Transcriptional regulator VC2007 N-terminal domain 82.49
d1j5ya165 Putative transcriptional regulator TM1602, N-termi 81.8
d1xd7a_127 Hypothetical protein ywnA {Bacillus subtilis [TaxI 80.88
>d2hyec3 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Cullin homology domain
superfamily: Cullin homology domain
family: Cullin homology domain
domain: Cullin-4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-58  Score=435.66  Aligned_cols=270  Identities=40%  Similarity=0.727  Sum_probs=255.5

Q ss_pred             ChHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHH
Q 014910           61 SSSELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQ  140 (416)
Q Consensus        61 ~~~e~La~y~d~~l~~~~~~~~~~~e~~~~l~~i~~lf~~l~~KD~F~~~Y~~~La~RLL~~~s~~~~~E~~~i~~Lk~~  140 (416)
                      ++||+||+|||.++|++. +..++++++..+++++.+|+|+++||+|+.+|+++||+|||.+.+.+.+.|..+|+.|+.+
T Consensus         2 ~~~e~la~y~D~~lr~~~-k~~~~~~~~~~l~~i~~lf~~l~~Kd~F~~~Y~~~La~RLL~~~~~~~~~E~~~i~~L~~~   80 (273)
T d2hyec3           2 KPAELIAKHVDSKLRAGN-KEATDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHE   80 (273)
T ss_dssp             HHHHHHHHHHHHHHSSCG-GGCCSTTHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHTT
T ss_pred             CcHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence            478999999999999854 4567889999999999999999999999999999999999999999999999999999999


Q ss_pred             hCChhhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcceEEEEeecCCCCCCCCCCccCCHHHHHHHHHHHHHHhhc
Q 014910          141 CGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYKSSDLNLPSEMVKCVEVFKGFYETK  220 (416)
Q Consensus       141 ~G~~~~~kl~~Ml~D~~~S~~l~~~f~~~~~~~~~~~~~~~~~~~VLs~~~WP~~~~~~~~lP~~l~~~~~~f~~~Y~~k  220 (416)
                      ||.+++.+|+.|++|++.|.+++.+|++++..... ..+++|+|.||+++.||..++.++.+|+++..+++.|++||..+
T Consensus        81 ~g~~~~~kl~~Ml~D~~~S~~l~~~f~~~~~~~~~-~~~~~~~v~vLs~~~WP~~~~~~~~lP~~l~~~~~~F~~~Y~~~  159 (273)
T d2hyec3          81 CGAAFTSKLEGMFKDMELSKDIMVHFKQHMQNQSD-SGPIDLTVNILTMGYWPTYTPMEVHLTPEMIKLQEVFKAFYLGK  159 (273)
T ss_dssp             TCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-CCCCEEEEEEEETTTSCCCCCCCCCCCHHHHHHHHHHHHHHHTT
T ss_pred             hChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-CCCCceEEEEeeCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999998875543 45789999999999999998889999999999999999999999


Q ss_pred             CCCceEEeccCCceEEEEeEecceeEEEEEcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeec
Q 014910          221 TKHRKLTWIYSLGQCNINGKFEQKNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK  300 (416)
Q Consensus       221 ~~~R~L~w~~~lg~~~l~~~~~~~~~~l~~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~  300 (416)
                      |++|+|.|.+++|+|+|+++++++++++.||++||+||++||+.+.+|+++|++.||++.++++++|.+|+..|.+||.+
T Consensus       160 ~~~RkL~w~~~ls~~~l~~~~~~~~~~l~~s~~Qa~ILl~fn~~~~~t~~~i~~~~~i~~~~l~~~L~~L~~~k~~iL~~  239 (273)
T d2hyec3         160 HSGRKLQWQTTLGHAVLKAEFKEGKKEFQVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKARVLIK  239 (273)
T ss_dssp             SCSEECCBCGGGCEEEEECCCSSCCCEEEEEHHHHHHHHHTTSCCCEEHHHHHHHTCCCHHHHHHHHHTTTTTTTCSEEE
T ss_pred             CCCCEEEEecCCccEEEEEEECCCcEEEEEcHHHHHHHHHhcCCCCCcHHHHHHHHCcCHHHHHHHHHHHHhcccceeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999888999999


Q ss_pred             CCCCCCCCCCCeEEEccCCCCCcceeeecCCC
Q 014910          301 EPNTKTISQSDHFEFNSKFTDRMRRIKIPLPP  332 (416)
Q Consensus       301 ~~~~~~i~~~~~~~lN~~f~~~~~ki~i~~~~  332 (416)
                      .+++..+.+++.|.+|.+|+++++|++|++++
T Consensus       240 ~~~~~~~~~~~~~~~N~~F~~k~~kiki~~~~  271 (273)
T d2hyec3         240 SPKGKEVEDGDKFIFNGEFKHKLFRIKINQIQ  271 (273)
T ss_dssp             TTCSSSCCSSCEEEECCCCCCSCSSEECGGGG
T ss_pred             cCCCCcCCCCCEEEEeccCCCCCeEEeecccc
Confidence            99888999999999999999999999998653
>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ldja1 a.4.5.34 (A:687-776) Anaphase promoting complex (APC) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hyec1 a.4.5.34 (C:676-759) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1iuya_ a.4.5.34 (A:) Cullin-3 homologue {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1wi9a_ a.4.5.47 (A:) Hypothetical protein C20orf116 homolog {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1z91a1 a.4.5.28 (A:8-144) Organic hydroperoxide resistance transcriptional regulator OhrR {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1p6ra_ a.4.5.39 (A:) Penicillinase repressor BlaI {Bacillus licheniformis [TaxId: 1402]} Back     information, alignment and structure
>d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1p4xa2 a.4.5.28 (A:126-250) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2bv6a1 a.4.5.28 (A:5-140) Transcriptional regulator MgrA {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein Hpr {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]} Back     information, alignment and structure
>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2g9wa1 a.4.5.39 (A:3-124) Hypothetical protein Rv1846c {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1okra_ a.4.5.39 (A:) Methicillin resistance regulatory protein MecI {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein CadC {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1sd4a_ a.4.5.39 (A:) Penicillinase repressor BlaI {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1xd7a_ a.4.5.55 (A:) Hypothetical protein ywnA {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure