Citrus Sinensis ID: 014929

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-----

MGESRGPFLRAFIPGSTSSDDTGRLNLDARGNRGSHSVGTKNRGHASRSWIKIDQDGNFEILELDKTTIMRHCSLPARDLRLLDPLFIYPSTILGREKAIVVSLVQIRCIITADEVILMNSLDGCVVQYYLELCKRLQTNKDQADDLPFEFRALELALELTCMSLDAQVKELGMEIYPVLDELASSISTLNLEHLRRLKGHLLALTQQVQKVHDEIEHLMDDDGDMAAMYLTEKKQRLDSSSDGYTQTNISSLDRVVSKSAPVSPVGSISGAQKLQRAFSSIVTSKHGSLISSSSNRENVEQLEMLLEAYFVVVDNTLSKLLSLKEYIDDTEDLINIKLGNVQNQLIQFELLLTAATFVATIFAVVTGVFGMNLKASVFDYPSAFHWVLVITGLAGCLLYFSFLFYFKHKKVFPL

ccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccEEEEEEcHHHHHHHccccccccccccccccccccccccccEEEEEcccEEEEEEcccEEEEcccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccccccccccccHHHHccccccccccccccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccc

cccccccccccccccccccccccccccccccccccccccEcccccccEEEEEEcccccEEEEEccHHHHHHHHcccHHHHHHcccccccccEEEEcccEEEEEHHHEEEEEEccEEEEEccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHcccccccccccccccccccccccccHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccc

mgesrgpflrafipgstssddtgrlnldargnrgshsvgtknrghasrswikidqdgnfeileldkttimrhcslpardlrlldplfiypstilgREKAIVVSLVQIRCIITADEVILMNSLDGCVVQYYLELCKRLQtnkdqaddlPFEFRALELALELTCMSLDAQVKELGMEIYPVLDELASSISTLNLEHLRRLKGHLLALTQQVQKVHDEIEHLMDDDGDMAAMYLTEKKqrldsssdgytqtnissldrvvsksapvspvgsisgAQKLQRAFSSIVtskhgslissssnrENVEQLEMLLEAYFVVVDNTLSKLLSLKEYIDDTEDLINIKLGNVQNQLIQFELLLTAATFVATIFAVVTGVFGmnlkasvfdypsAFHWVLVITGLAGCLLYFSFLFYfkhkkvfpl

mgesrgpflrafipgstssddtgrLNLDargnrgshsvgtknrghasrswikidqdgnFEILELDKTTIMRHCslpardlrlldPLFIYPSTILGREKAIVVSLVQIRCIITADEVILMNSLDGCVVQYYLELCKRLQTNKDQADDLPFEFRALELALELTCMSLDAQVKELGMEIYPVLDELASSISTLNLEHLRRLKGHLLALTQQVQKVHDEIEHLMDDDGDMAAMYLTEKkqrldsssdgytqtnissldrvvsksAPVSPVGSISGAQKLQRAFSSIVTskhgslissssnrENVEQLEMLLEAYFVVVDNTLSKLLSLKEYIDDTEDLINIKLGNVQNQLIQFELLLTAATFVATIFAVVTGVFGMNLKASVFDYPSAFHWVLVITGLAGCLLYFSFLFYFKHKKVFPL

MGESRGPFLRAFIPGSTSSDDTGRLNLDARGNRGSHSVGTKNRGHASRSWIKIDQDGNFEILELDKTTIMRHCSlpardlrlldplFIYPSTILGREKAIVVSLVQIRCIITADEVILMNSLDGCVVQYYLELCKRLQTNKDQADDLPFEFRalelalelTCMSLDAQVKELGMEIYPVLDELASSISTLNLEHLRRLKGHLLALTQQVQKVHDEIEHLMDDDGDMAAMYLTEKKQRLDSSSDGYTQTNISSLDRVVSKSAPVSPVGSISGAQKLQRAFSSIVTSKHGSLISSSSNRENVEQLEMLLEAYFVVVDNTLSKLLSLKEYIDDTEDLINIKLGNVQNQLIQfellltaatfvatifavvtgvfGMNLKASVFDYPSAFHWVLVITGLAGCLLYFSFLFYFKHKKVFPL

************************************************SWIKIDQDGNFEILELDKTTIMRHCSLPARDLRLLDPLFIYPSTILGREKAIVVSLVQIRCIITADEVILMNSLDGCVVQYYLELCKRLQTNKDQADDLPFEFRALELALELTCMSLDAQVKELGMEIYPVLDELASSISTLNLEHLRRLKGHLLALTQQVQKVHDEIEHLM*********************************************************************************QLEMLLEAYFVVVDNTLSKLLSLKEYIDDTEDLINIKLGNVQNQLIQFELLLTAATFVATIFAVVTGVFGMNLKASVFDYPSAFHWVLVITGLAGCLLYFSFLFYFKHKKV***

*************************************************WIKIDQDGNFEILELDKTTIMRHCSLPARDLRLLDPLFIYPSTILGREKAIVVSLVQIRCIITADEVILMNSLDGCVVQYYLELCK*L********DLPFEFRALELALELTCMSLDAQVKELGMEIYPVLDELA**********LRRLKGHLLALTQQVQKVHDEIEHLMDDDGDMAAMYLTEKKQRLDSSSDGYTQTNISSL***************************************SSSNRENVEQLEMLLEAYFVVVDNTLSKLLSLKEYIDDTEDLINIKLGNVQNQLIQFELLLTAATFVATIFAVVTGVFGMNLKASVFDYPSAFHWVLVITGLAGCLLYFSFLFYFKHKKVFPL

MGESRGPFLRAFIPGSTSSDDTGRLNLDARG****************RSWIKIDQDGNFEILELDKTTIMRHCSLPARDLRLLDPLFIYPSTILGREKAIVVSLVQIRCIITADEVILMNSLDGCVVQYYLELCKRLQTNKDQADDLPFEFRALELALELTCMSLDAQVKELGMEIYPVLDELASSISTLNLEHLRRLKGHLLALTQQVQKVHDEIEHLMDDDGDMAAMYLTEKKQ*********TQTNISSLDRV*************SGAQKLQRAFSSIVTSKHGSLISSSSNRENVEQLEMLLEAYFVVVDNTLSKLLSLKEYIDDTEDLINIKLGNVQNQLIQFELLLTAATFVATIFAVVTGVFGMNLKASVFDYPSAFHWVLVITGLAGCLLYFSFLFYFKHKKVFPL

************************L********GSHSVGTKNRGHASRSWIKIDQDGNFEILELDKTTIMRHCSLPARDLRLLDPLFIYPSTILGREKAIVVSLVQIRCIITADEVILMNSLDGCVVQYYLELCKRLQTNKDQADDLPFEFRALELALELTCMSLDAQVKELGMEIYPVLDELASSISTLNLEHLRRLKGHLLALTQQVQKVHDEIEHLMDDDGDMAAMYLTEKKQR***********************************************************RENVEQLEMLLEAYFVVVDNTLSKLLSLKEYIDDTEDLINIKLGNVQNQLIQFELLLTAATFVATIFAVVTGVFGMNLKASVFDYPSAFHWVLVITGLAGCLLYFSFLFYFKHKKVFPL

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MGESRGPFLRAFIPGSTSSDDTGRLNLDARGNRGSHSVGTKNRGHASRSWIKIDQDGNFEILELDKTTIMRHCSLPARDLRLLDPLFIYPSTILGREKAIVVSLVQIRCIITADEVILMNSLDGCVVQYYLELCKRLQTNKDQADDLPFEFRALELALELTCMSLDAQVKELGMEIYPVLDELASSISTLNLEHLRRLKGHxxxxxxxxxxxxxxxxxxxxxDGDMAAMYLTEKKQRLDSSSDGYTQTNISSLDRVVSKSAPVSPVGSISGAQKLQRAFSSIVTSKHGSLISSSSNRENVEQLEMLLEAYFVVVDNTLSKLLSLKEYIDDTEDLINIKLGNVQNQLIQFELLLTAATFVATIFAVVTGVFGMNLKASVFDYPSAFHWVLVITGLAGCLLYFSFLFYFKHKKVFPL

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		415	2.2.26 [Sep-21-2011]
Q9ZPR4		421	Magnesium transporter MRS	yes	no	0.997	0.983	0.701	1e-154
Q9SAH0		443	Magnesium transporter MRS	no	no	0.918	0.860	0.571	1e-129
Q9S9N4		442	Magnesium transporter MRS	no	no	0.915	0.859	0.573	1e-128
Q67UQ7		436	Magnesium transporter MRS	yes	no	0.898	0.855	0.611	1e-127
A2YFN7		436	Magnesium transporter MRS	N/A	no	0.898	0.855	0.611	1e-127
Q0JBZ6		428	Magnesium transporter MRS	no	no	0.886	0.859	0.557	1e-113
A2XV81		428	Magnesium transporter MRS	N/A	no	0.886	0.859	0.557	1e-113
Q304A0		386	Magnesium transporter MRS	no	no	0.855	0.919	0.427	1e-73
Q9LJN2		484	Magnesium transporter MRS	no	no	0.879	0.754	0.388	1e-72
Q10D38		384	Magnesium transporter MRS	no	no	0.836	0.903	0.452	2e-69

>sp\|Q9ZPR4\|MRS25_ARATH Magnesium transporter MRS2-5 OS=Arabidopsis thaliana GN=MRS2-5 PE=1 SV=1	Back alignment and function desciption

 Score =  545 bits (1405), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 296/422 (70%), Positives = 337/422 (79%), Gaps = 8/422 (1%)

Query: 1   MGESRGPFLRAFIPGSTSSDDTGR-LNLDARGNRGSHSVGTKNRGHASRSWIKIDQDGNF 59
           MGE   PF  + +P   SS   GR +N + + NRG    G K RG +SRSW+KIDQDGN 
Sbjct: 1   MGEQLDPFSASNLPDFISSQKIGRPVNFEGQTNRGHPFSGLKKRGQSSRSWVKIDQDGNS 60

Query: 60  EILELDKTTIMRHCSLPARDLRLLDPLFIYPSTILGREKAIVVSLVQIRCIITADEVILM 119
            +LELDK TIM+ CSLP+RDLRLLDPLFIYPS+ILGRE+AIVVSL +IRCIITA+EVILM
Sbjct: 61  AVLELDKATIMKRCSLPSRDLRLLDPLFIYPSSILGRERAIVVSLEKIRCIITAEEVILM 120

Query: 120 NSLDGCVVQYYLELCKRLQTNKD--QADDLPFEFRALELALELTCMSLDAQVKELGMEIY 177
           N+ D  VVQY  ELCKRLQ+N +    DDLPFEF+ALEL LEL+C+SLDAQV EL ME+Y
Sbjct: 121 NARDASVVQYQSELCKRLQSNHNLNVKDDLPFEFKALELVLELSCLSLDAQVNELEMEVY 180

Query: 178 PVLDELASSISTLNLEHLRRLKGHLLALTQQVQKVHDEIEHLMDDDGDMAAMYLTEKKQR 237
           PVLDELA++ISTLNLEH+RRLKG LL LTQ+VQKV DEIEHLMDDD DMA MYLTEKK+R
Sbjct: 181 PVLDELATNISTLNLEHVRRLKGRLLTLTQKVQKVCDEIEHLMDDDDDMAEMYLTEKKER 240

Query: 238 LDSSSDGYTQTNISS---LDRVVSKSAPVSPVGSISGA-QKLQRAFSSIVTSKHGSLISS 293
            ++ +    + NI        +VSKSAPVSPVGS SG   KLQRAFSSIV S H SL+SS
Sbjct: 241 AEAHASEELEDNIGEDFESSGIVSKSAPVSPVGSTSGNFGKLQRAFSSIVGS-HKSLLSS 299

Query: 294 SSNRENVEQLEMLLEAYFVVVDNTLSKLLSLKEYIDDTEDLINIKLGNVQNQLIQFELLL 353
           SS  EN++QLEMLLEAYFVVVDNTLSKL SLKEYIDDTEDLINIKLGNVQNQLIQF+LLL
Sbjct: 300 SSIGENIDQLEMLLEAYFVVVDNTLSKLSSLKEYIDDTEDLINIKLGNVQNQLIQFQLLL 359

Query: 354 TAATFVATIFAVVTGVFGMNLKASVFDYPSAFHWVLVITGLAGCLLYFSFLFYFKHKKVF 413
           TAATFVA IFA VT VFGMNL+ SVF  P+ F +VL+ITG+    LYF F+ YFKHKKVF
Sbjct: 360 TAATFVAAIFAAVTAVFGMNLQDSVFQNPTTFQYVLLITGIGCGFLYFGFVLYFKHKKVF 419

Query: 414 PL 415
           PL
Sbjct: 420 PL 421

Magnesium transporter that may mediate the influx of magnesium.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q9SAH0\|MRS2A_ARATH Magnesium transporter MRS2-10 OS=Arabidopsis thaliana GN=MRS2-10 PE=2 SV=1	Back alignment and function description

>sp\|Q9S9N4\|MRS21_ARATH Magnesium transporter MRS2-1 OS=Arabidopsis thaliana GN=MRS2-1 PE=2 SV=1	Back alignment and function description

>sp\|Q67UQ7\|MRS2B_ORYSJ Magnesium transporter MRS2-B OS=Oryza sativa subsp. japonica GN=MRS2-B PE=2 SV=1	Back alignment and function description

>sp\|A2YFN7\|MRS2B_ORYSI Magnesium transporter MRS2-B OS=Oryza sativa subsp. indica GN=MRS2-B PE=3 SV=1	Back alignment and function description

>sp\|Q0JBZ6\|MRS2C_ORYSJ Magnesium transporter MRS2-C OS=Oryza sativa subsp. japonica GN=MRS2-C PE=3 SV=3	Back alignment and function description

>sp\|A2XV81\|MRS2C_ORYSI Magnesium transporter MRS2-C OS=Oryza sativa subsp. indica GN=H0311C03.3 PE=3 SV=2	Back alignment and function description

>sp\|Q304A0\|MRS27_ARATH Magnesium transporter MRS2-7 OS=Arabidopsis thaliana GN=MRS2-7 PE=2 SV=1	Back alignment and function description

>sp\|Q9LJN2\|MRS23_ARATH Magnesium transporter MRS2-3 OS=Arabidopsis thaliana GN=MRS2-3 PE=1 SV=1	Back alignment and function description

>sp\|Q10D38\|MRS2I_ORYSJ Magnesium transporter MRS2-I OS=Oryza sativa subsp. japonica GN=MRS2-I PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		415
224101445		419	magnesium transporter [Populus trichocar	1.0	0.990	0.780	0.0
225423464		421	PREDICTED: magnesium transporter MRS2-5	0.997	0.983	0.754	1e-178
224108880		419	magnesium transporter [Populus trichocar	0.987	0.978	0.782	1e-176
255542018		460	RNA splicing protein mrs2, mitochondrial	0.983	0.886	0.756	1e-172
297738091		349	unnamed protein product [Vitis vinifera]	0.831	0.988	0.821	1e-163
15227679		421	magnesium transporter MRS2-5 [Arabidopsi	0.997	0.983	0.701	1e-152
297818012		421	hypothetical protein ARALYDRAFT_904644 [	0.997	0.983	0.699	1e-152
25360882		421	MRS2-5 [Arabidopsis thaliana]	0.997	0.983	0.699	1e-152
449452845		380	PREDICTED: magnesium transporter MRS2-5-	0.908	0.992	0.709	1e-150
449523311		380	PREDICTED: magnesium transporter MRS2-5-	0.903	0.986	0.710	1e-150

>gi\|224101445\|ref\|XP_002312283.1\| magnesium transporter [Populus trichocarpa] gi\|222852103\|gb\|EEE89650.1\| magnesium transporter [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  659 bits (1699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/419 (78%), Positives = 362/419 (86%), Gaps = 4/419 (0%)

Query: 1   MGESRGPFLRAFIPGSTSSDDTGRLNLDARGNRGSHSVGTKNRGHA--SRSWIKIDQDGN 58
           M E +G  + A +P   SS    RLNLD  GNRGS   G K RGH   +RSWIKIDQDGN
Sbjct: 1   MEEFQGLHVPAGVPEPASSHGNVRLNLDGYGNRGSGFPGLKKRGHGHGNRSWIKIDQDGN 60

Query: 59  FEILELDKTTIMRHCSLPARDLRLLDPLFIYPSTILGREKAIVVSLVQIRCIITADEVIL 118
            +ILELDK TIMRHCSLP+RDLRLLDPLFIYPSTILGREKAIVVSL QIRCIITADEVIL
Sbjct: 61  SKILELDKATIMRHCSLPSRDLRLLDPLFIYPSTILGREKAIVVSLEQIRCIITADEVIL 120

Query: 119 MNSLDGCVVQYYLELCKRLQTNKDQADDLPFEFRALELALELTCMSLDAQVKELGMEIYP 178
           MNSLDGCVVQY  E CKRLQTN++QA+DLPFEFRALELAL+LTCMSLDAQVKELG+E+YP
Sbjct: 121 MNSLDGCVVQYMSEFCKRLQTNREQAEDLPFEFRALELALDLTCMSLDAQVKELGLEVYP 180

Query: 179 VLDELASSISTLNLEHLRRLKGHLLALTQQVQKVHDEIEHLMDDDGDMAAMYLTEKKQRL 238
           VLDELA+SI+T NLE +RRLKGHLLALTQ+VQ+VHDEIEHLMDDDGDMA MYLTEK+QR 
Sbjct: 181 VLDELATSINTHNLERVRRLKGHLLALTQRVQRVHDEIEHLMDDDGDMAEMYLTEKRQRS 240

Query: 239 DSSS--DGYTQTNISSLDRVVSKSAPVSPVGSISGAQKLQRAFSSIVTSKHGSLISSSSN 296
           ++ +  D Y Q +I S  RVVSKSAPVSPV S+SGAQKLQRAFS+I  SKHGSL+SSSSN
Sbjct: 241 EAYALGDMYFQNDIPSEGRVVSKSAPVSPVRSLSGAQKLQRAFSNISPSKHGSLMSSSSN 300

Query: 297 RENVEQLEMLLEAYFVVVDNTLSKLLSLKEYIDDTEDLINIKLGNVQNQLIQFELLLTAA 356
            EN++QLEMLLEAYF  +DNTLSKL SLKEYIDDTEDLINIKLGNVQNQLIQFELLLTAA
Sbjct: 301 GENIDQLEMLLEAYFAAIDNTLSKLFSLKEYIDDTEDLINIKLGNVQNQLIQFELLLTAA 360

Query: 357 TFVATIFAVVTGVFGMNLKASVFDYPSAFHWVLVITGLAGCLLYFSFLFYFKHKKVFPL 415
           TFV TIFAVVTG+FGMN  AS+FDYP+AF+WVL+ITGLA   LY  FLFYF++KKVFPL
Sbjct: 361 TFVTTIFAVVTGIFGMNFVASIFDYPNAFNWVLIITGLACVFLYLCFLFYFRYKKVFPL 419

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225423464\|ref\|XP_002274070.1\| PREDICTED: magnesium transporter MRS2-5 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224108880\|ref\|XP_002315002.1\| magnesium transporter [Populus trichocarpa] gi\|222864042\|gb\|EEF01173.1\| magnesium transporter [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255542018\|ref\|XP_002512073.1\| RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis] gi\|223549253\|gb\|EEF50742.1\| RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|297738091\|emb\|CBI27292.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi|15227679|ref|NP_178460.1| magnesium transporter MRS2-5 [Arabidopsis thaliana] gi|186499098|ref|NP_001118259.1| magnesium transporter MRS2-5 [Arabidopsis thaliana] gi|75274822|sp|Q9ZPR4.1|MRS25_ARATH RecName: Full=Magnesium transporter MRS2-5; AltName: Full=Magnesium Transporter 3; Short=AtMGT3 gi|20336657|gb|AAM19344.1|AF499434_1 hypothetical protein [Arabidopsis thaliana] gi|4406759|gb|AAD20070.1| hypothetical protein [Arabidopsis thaliana] gi|17979301|gb|AAL49876.1| unknown protein [Arabidopsis thaliana] gi|20465991|gb|AAM20217.1| unknown protein [Arabidopsis thaliana] gi|330250631|gb|AEC05725.1| magnesium transporter MRS2-5 [Arabidopsis thaliana] gi|330250632|gb|AEC05726.1| magnesium transporter MRS2-5 [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|297818012\|ref\|XP_002876889.1\| hypothetical protein ARALYDRAFT_904644 [Arabidopsis lyrata subsp. lyrata] gi\|297322727\|gb\|EFH53148.1\| hypothetical protein ARALYDRAFT_904644 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|25360882\|gb\|AAN73215.1\| MRS2-5 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|449452845\|ref\|XP_004144169.1\| PREDICTED: magnesium transporter MRS2-5-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449523311\|ref\|XP_004168667.1\| PREDICTED: magnesium transporter MRS2-5-like [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		415
TAIR\|locus:2044254		421	MGT3 "magnesium transporter 3"	0.995	0.980	0.619	1.3e-123
TAIR\|locus:2025767		443	MGT1 "magnesium transporter 1"	0.742	0.695	0.476	6.9e-96
TAIR\|locus:2200542		442	MGT2 "magnesium transporter 2"	0.737	0.692	0.471	1.4e-95
TAIR\|locus:2091176		484	MGT4 "magnesium transporter 4"	0.289	0.247	0.459	3.6e-53
TAIR\|locus:2077665		436	MGT6 "magnesium transporter 6"	0.602	0.573	0.354	2.7e-36
TAIR\|locus:2174799		394	MGT9 "magnesium transporter 9"	0.428	0.451	0.335	1e-29
TAIR\|locus:2144746		294	AT5G09720 [Arabidopsis thalian	0.585	0.826	0.355	1e-27
TAIR\|locus:2139905		408	MGT5 "AT4G28580" [Arabidopsis	0.390	0.397	0.301	1.9e-21
UNIPROTKB\|Q6C8H7		455	LPE10 "Mitochondrial inner mem	0.472	0.430	0.287	3.9e-18
CGD\|CAL0005011		453	orf19.3455 [Candida albicans (	0.274	0.251	0.321	3.1e-13

TAIR\|locus:2044254 MGT3 "magnesium transporter 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1215 (432.8 bits), Expect = 1.3e-123, P = 1.3e-123
 Identities = 262/423 (61%), Positives = 301/423 (71%)

Query:     1 MGESRGPFLRAFIPGSTSSDDTGR-LNLDARGNRGSHSVGTKNRGHASRSWIKIDQDGNF 59
             MGE   PF  + +P   SS   GR +N + + NRG    G K RG +SRSW+KIDQDGN 
Sbjct:     1 MGEQLDPFSASNLPDFISSQKIGRPVNFEGQTNRGHPFSGLKKRGQSSRSWVKIDQDGNS 60

Query:    60 EILELDKTTIMRHCSXXXXXXXXXXXXFIYPSTILGREKAIVVSLVQIRCIITADEVILM 119
              +LELDK TIM+ CS            FIYPS+ILGRE+AIVVSL +IRCIITA+EVILM
Sbjct:    61 AVLELDKATIMKRCSLPSRDLRLLDPLFIYPSSILGRERAIVVSLEKIRCIITAEEVILM 120

Query:   120 NSLDGCVVQYYLELCKRLQTNKDQ--ADDLPFEFRXXXXXXXXTCMSLDAQVKELGMEIY 177
             N+ D  VVQY  ELCKRLQ+N +    DDLPFEF+        +C+SLDAQV EL ME+Y
Sbjct:   121 NARDASVVQYQSELCKRLQSNHNLNVKDDLPFEFKALELVLELSCLSLDAQVNELEMEVY 180

Query:   178 PVLDELASSISTLNLEHLRRLKGHLLALTQQVQKVHDEIEHLMDDDGDMAAMYLTEKKQR 237
             PVLDELA++ISTLNLEH+RRLKG LL LTQ+VQKV DEIEHLMDDD DMA MYLTEKK+R
Sbjct:   181 PVLDELATNISTLNLEHVRRLKGRLLTLTQKVQKVCDEIEHLMDDDDDMAEMYLTEKKER 240

Query:   238 LDSSSDGYTQTNISS---LDRVVSKSAPVSPVGSISGA-QKLQRAFSSIVTSKHGSLISS 293
              ++ +    + NI        +VSKSAPVSPVGS SG   KLQRAFSSIV S H SL+SS
Sbjct:   241 AEAHASEELEDNIGEDFESSGIVSKSAPVSPVGSTSGNFGKLQRAFSSIVGS-HKSLLSS 299

Query:   294 SSNRENVEQLEMLLEAYFVVVDNTLSKLLSLKEYIDDTEDLINIKLGNVQNQLIQXXXXX 353
             SS  EN++QLEMLLEAYFVVVDNTLSKL SLKEYIDDTEDLINIKLGNVQNQLIQ     
Sbjct:   300 SSIGENIDQLEMLLEAYFVVVDNTLSKLSSLKEYIDDTEDLINIKLGNVQNQLIQFQLLL 359

Query:   354 XXXXXXXXXXXXXXXXXGMNLKASVFDYPSAFHWVLVITGLAGC-LLYFSFLFYFKHKKV 412
                              GMNL+ SVF  P+ F +VL+ITG+ GC  LYF F+ YFKHKKV
Sbjct:   360 TAATFVAAIFAAVTAVFGMNLQDSVFQNPTTFQYVLLITGI-GCGFLYFGFVLYFKHKKV 418

Query:   413 FPL 415
             FPL
Sbjct:   419 FPL 421

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0030001 "metal ion transport" evidence=ISS

GO:0046873 "metal ion transmembrane transporter activity" evidence=ISS

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IDA

TAIR\|locus:2025767 MGT1 "magnesium transporter 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2200542 MGT2 "magnesium transporter 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2091176 MGT4 "magnesium transporter 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2077665 MGT6 "magnesium transporter 6" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2174799 MGT9 "magnesium transporter 9" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2144746 AT5G09720 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2139905 MGT5 "AT4G28580" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q6C8H7 LPE10 "Mitochondrial inner membrane magnesium transporter LPE10" [Yarrowia lipolytica CLIB122 (taxid:284591)]	Back alignment and assigned GO terms

CGD\|CAL0005011 orf19.3455 [Candida albicans (taxid:5476)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZPR4	MRS25_ARATH	No assigned EC number	0.7014	0.9975	0.9833	yes	no
Q67UQ7	MRS2B_ORYSJ	No assigned EC number	0.6111	0.8987	0.8555	yes	no
A2XV81	MRS2C_ORYSI	No assigned EC number	0.5572	0.8867	0.8598	N/A	no
A2YFN7	MRS2B_ORYSI	No assigned EC number	0.6111	0.8987	0.8555	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00080897	magnesium transporter (420 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		415
cd12823		323	cd12823, Mrs2_Mfm1p-like, Saccharomyces cerevisiae	1e-106
cd12822		289	cd12822, TmCorA-like, Thermotoga maritima CorA-lik	6e-07
cd12827		289	cd12827, EcCorA_ZntB-like_u2, uncharacterized bact	7e-06
COG0598		322	COG0598, CorA, Mg2+ and Co2+ transporters [Inorgan	1e-04
cd12821		285	cd12821, EcCorA_ZntB-like, Escherichia coli CorA-S	2e-04
pfam01544		291	pfam01544, CorA, CorA-like Mg2+ transporter protei	0.001
TIGR00383		318	TIGR00383, corA, magnesium Mg(2+) and cobalt Co(2+	0.002
cd12828		294	cd12828, TmCorA-like_1, Thermotoga maritima CorA_l	0.003

>gnl\|CDD\|213357 cd12823, Mrs2_Mfm1p-like, Saccharomyces cerevisiae inner mitochondrial membrane Mg2+ transporters Mfm1p and Mrs2p-like family	Back alignment and domain information

 Score =  316 bits (813), Expect = e-106
 Identities = 146/373 (39%), Positives = 195/373 (52%), Gaps = 60/373 (16%)

Query: 50  WIKIDQDGNFEILELDKTTIMRHCSLPARDLRLLDPLFI-YPSTILGREKAIVVSLVQIR 108
           W  ID  GN  ++ELDK+ ++R   L  RDLRLLDP    YP +IL RE AI+V+L  IR
Sbjct: 1   WTVIDSTGNATVVELDKSELLRELGLQPRDLRLLDPTLTSYPPSILVRENAILVNLEHIR 60

Query: 109 CIITADEVILMNSLDG---CVVQYYLELCKRLQT------NKDQADDLPFEFRALELALE 159
            IITADEV+L +        V  +  EL +RL +           D LPFEFRALE ALE
Sbjct: 61  AIITADEVLLFDPDGSSSALVSAFLEELQRRLASSNGSESESGGEDSLPFEFRALEAALE 120

Query: 160 LTCMSLDAQVKELGMEIYPVLDELASSISTLNLEHLRRLKGHLLALTQQVQKVHDEIEHL 219
             C  L+A++K L  E  P+LDEL   IST NLE L  LK  L+ L  +VQKV D +E L
Sbjct: 121 EVCSHLEAELKRLEPEALPLLDELTDKISTSNLERLLPLKRRLVELETRVQKVRDALEEL 180

Query: 220 MDDDGDMAAMYLTEKKQRLDSSSDGYTQTNISSLDRVVSKSAPVSPVGSISGAQKLQRAF 279
           +DDD DMA MYLT+K                                             
Sbjct: 181 LDDDEDMADMYLTDKAA------------------------------------------- 197

Query: 280 SSIVTSKHGSLISSSSNRENVEQLEMLLEAYFVVVDNTLSKLLSLKEYIDDTEDLINIKL 339
                      + SS   ++ E++EMLLEAY   VD  L+KL  L+EYIDDTE+LIN+ L
Sbjct: 198 -------GPERLESSRKEDDHEEVEMLLEAYLQQVDELLNKLEELREYIDDTEELINLIL 250

Query: 340 GNVQNQLIQFELLLTAATFVATIFAVVTGVFGMNLKASVFDYPSAFHWVLVITGLAGCLL 399
            + +NQL++ EL L+  T    +  +V G+FGMNL + + + P AF  V   + +   L+
Sbjct: 251 DSRRNQLMRLELKLSIGTLSLAVGTLVAGLFGMNLPSGLEESPYAFWIVTGGSVVGSILI 310

Query: 400 YFSFLFYFKHKKV 412
           +   L Y + K++
Sbjct: 311 FIVVLRYLRRKRL 323

A eukaryotic subfamily belonging to the Escherichia coli CorA-Salmonella typhimurium ZntB_like family (EcCorA_ZntB-like) family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. This functionally diverse subfamily includes the inner mitochondrial membrane Mg2+ transporters Saccharomyces cerevisiae Mfm1p/Lpe10p, Mrs2p, and human MRS2/ MRS2L. It also includes a family of Arabidopsis thaliana proteins (AtMGTs) some of which are localized to distinct tissues, and not all of which can transport Mg2+. Structures of the intracellular domain of two EcCorA_ZntB-like family transporters: Vibrio parahaemolyticus and Salmonella typhimurium ZntB form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA, and Mrs2p. Natural variants such as GVN and GIN, as in some ZntB family proteins, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport. Length = 323

>gnl\|CDD\|213356 cd12822, TmCorA-like, Thermotoga maritima CorA-like family	Back alignment and domain information

>gnl\|CDD\|213361 cd12827, EcCorA_ZntB-like_u2, uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB family	Back alignment and domain information

>gnl\|CDD\|223671 COG0598, CorA, Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|213355 cd12821, EcCorA_ZntB-like, Escherichia coli CorA-Salmonella typhimurium ZntB_like family	Back alignment and domain information

>gnl\|CDD\|216560 pfam01544, CorA, CorA-like Mg2+ transporter protein	Back alignment and domain information

>gnl\|CDD\|129479 TIGR00383, corA, magnesium Mg(2+) and cobalt Co(2+) transport protein (corA)	Back alignment and domain information

>gnl\|CDD\|213362 cd12828, TmCorA-like_1, Thermotoga maritima CorA_like subfamily	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		415
KOG2662		414	consensus Magnesium transporters: CorA family [Ino	100.0
COG0598		322	CorA Mg2+ and Co2+ transporters [Inorganic ion tra	100.0
TIGR00383		318	corA magnesium Mg(2+) and cobalt Co(2+) transport	100.0
PRK09546		324	zntB zinc transporter; Reviewed	100.0
PRK11085		316	magnesium/nickel/cobalt transporter CorA; Provisio	99.96
PF01544		292	CorA: CorA-like Mg2+ transporter protein; InterPro	99.96
PRK11085		316	magnesium/nickel/cobalt transporter CorA; Provisio	96.38
PRK09546		324	zntB zinc transporter; Reviewed	95.64
COG0598		322	CorA Mg2+ and Co2+ transporters [Inorganic ion tra	94.8
TIGR00383		318	corA magnesium Mg(2+) and cobalt Co(2+) transport	94.57
PF10267		395	Tmemb_cc2: Predicted transmembrane and coiled-coil	90.3
PF01544		292	CorA: CorA-like Mg2+ transporter protein; InterPro	89.18
PF07332		121	DUF1469: Protein of unknown function (DUF1469); In	84.93
PRK15348		249	type III secretion system lipoprotein SsaJ; Provis	84.32

>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]	Back alignment and domain information

Probab=100.00  E-value=6.1e-85  Score=646.05  Aligned_cols=384  Identities=51%  Similarity=0.740  Sum_probs=347.0

Q ss_pred             CCCCCCCCCCCCCCCCcccCCCc-cccCCCCCCCC---CCCcccccCCCccEEEEEcCCCCeeEEEechhhhhhhcCCCc
Q 014929            2 GESRGPFLRAFIPGSTSSDDTGR-LNLDARGNRGS---HSVGTKNRGHASRSWIKIDQDGNFEILELDKTTIMRHCSLPA   77 (415)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~Wi~id~~g~~~~~e~~k~~l~~~~~L~~   77 (415)
                      ..++.|+.++.+|-...+.++++ .|.....++|.   ...+.++++.++++|++||.+|+++..+++|+.|++++||+|
T Consensus        15 ~l~~~~~~~s~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sw~~~D~tGn~~~~e~dK~~i~~r~~L~a   94 (414)
T KOG2662|consen   15 ALRLTPFGRSSLPFLRSALKTGSPSNSSPPILGGGKIDSSSVSKKSGSGSRSWTRFDATGNSTVLEVDKYTIMKRVGLPA   94 (414)
T ss_pred             ccccCCCCccccchhhhhccCCCCCCCCCCCCCcccccCcccccccCCcceEEEEEcCCCCeeeccccHHHHHHHcCCCh
Confidence            35678899999998877777776 44444555555   566777889999999999999999999999999999999999


Q ss_pred             cchhccCCCCCcCceEeeecCeeEeeecceEEEEecCceEEeccCCcchhhHHHHHHHHhccCC----------C-CCCC
Q 014929           78 RDLRLLDPLFIYPSTILGREKAIVVSLVQIRCIITADEVILMNSLDGCVVQYYLELCKRLQTNK----------D-QADD  146 (415)
Q Consensus        78 RDLr~Ld~~~~~~~~Il~Re~aivvnle~ir~IIt~d~vllf~~~~~~~~~~~~~L~~rL~~~~----------~-~~~~  146 (415)
                      ||||++||.++||++|++||+|||+|+|+||||||+|+|++|++.++ +.++.+++++|+....          + ..+.
T Consensus        95 RDLR~ldp~~~~~ssIl~RE~aIVlNLe~IKAIItaeeVll~d~~~~-v~~~~~el~~~l~~~~~~~~~q~s~~~~~~~~  173 (414)
T KOG2662|consen   95 RDLRKLDPSLSYPSSILGRENAIVLNLEHIKAIITADEVLLLDSLDP-VIPYNEELQRRLPVELESRGNQLSSDGGSKDE  173 (414)
T ss_pred             hhhhhccccccCccccccccceEEeehhhhheeeehhheeEeccccc-cchHHHHHHHHhcccccccccccCCCCCCCCC
Confidence            99999999999999999999999999999999999999999999887 8999999999997653          1 2378


Q ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchh
Q 014929          147 LPFEFRALELALELTCMSLDAQVKELGMEIYPVLDELASSISTLNLEHLRRLKGHLLALTQQVQKVHDEIEHLMDDDGDM  226 (415)
Q Consensus       147 LpFE~raLE~iL~~~~~~Le~~~~~Le~~~~~~ld~L~~~~~~~~Le~l~~lK~~L~~l~~~v~~vrd~l~~LlddD~dm  226 (415)
                      +||||||||+||+.+|+.|++++.+||..++++||+|+.++++.+|++|+.+|++|++|.++|++|||+|++|||||+||
T Consensus       174 lPFEFrALE~aLe~~~s~L~~~~~~Le~~~~~~LdeLt~~is~~nL~~lr~~k~~Lt~l~~rvqkvRDeLe~LLddd~Dm  253 (414)
T KOG2662|consen  174 LPFEFRALEVALEAACSFLDSRLSELETEAYPLLDELTNKISTLNLERLRILKKRLTELTSRVQKVRDELEELLDDDDDM  253 (414)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhhhhccCCCCCCCcccccccccccccCCCCCCCCCCcchhh-hhhhhhcccccccCCccccCCCcchhHHHHHH
Q 014929          227 AAMYLTEKKQRLDSSSDGYTQTNISSLDRVVSKSAPVSPVGSISGAQ-KLQRAFSSIVTSKHGSLISSSSNRENVEQLEM  305 (415)
Q Consensus       227 ~~m~Lt~k~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~~~~~~~eelE~  305 (415)
                      ++||||+|+.+.++                 +.|+|.+|+.....++ ++.+.++           . ...++++||+||
T Consensus       254 a~mYLT~K~~~~~~-----------------~~~~~~sp~~~~~~~r~~~~~~~s-----------~-~~~~dd~eElEM  304 (414)
T KOG2662|consen  254 AEMYLTRKLAQASS-----------------PESAPTSPTIKAGISRAKSNRASS-----------T-VRGEDDVEELEM  304 (414)
T ss_pred             HHHHHhHHhhhccc-----------------cccCCCCccccCCccchhhcccch-----------h-ccccccHHHHHH
Confidence            99999999877542                 4688998887774422 2222222           1 112789999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCchh
Q 014929          306 LLEAYFVVVDNTLSKLLSLKEYIDDTEDLINIKLGNVQNQLIQFELLLTAATFVATIFAVVTGVFGMNLKASVFDYPSAF  385 (415)
Q Consensus       306 LLe~Y~~~~d~~~~~l~~l~e~i~~~~d~~~~~Ld~~rN~imki~l~LtilTii~~i~t~IaGifGMN~~~~pe~~~~gf  385 (415)
                      |||+||+|+|.+.+++++++++|++|||+++++||++||++|+++|+||+.|++++++++|||+||||+++..|+++|+|
T Consensus       305 LLEaYf~qiD~~~nk~~~Lre~IddTEd~InI~LDs~RN~LiqleL~Lt~gT~~~s~~~~va~ifGMNl~~~l~~~~~~F  384 (414)
T KOG2662|consen  305 LLEAYFMQIDSTLNKLESLREYIDDTEDIINIQLDSNRNELIQLELLLTIGTFCLSVFSVVAGIFGMNLPSSLEEDHYAF  384 (414)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhccCCChh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 014929          386 HWVLVITGLAGCLLYFSFLFYFKHKKVFPL  415 (415)
Q Consensus       386 ~~v~~~~~~~~~~l~~~~~~~frrk~wl~~  415 (415)
                      +|++++++++|+++|++.+.|+|+||++++
T Consensus       385 ~~vv~~~~~~~~~lf~~i~~~~k~krL~~~  414 (414)
T KOG2662|consen  385 KWVVGITFTLCIVLFVVILGYAKLKRLLGL  414 (414)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence            999999999999999999999999998874

>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA)	Back alignment and domain information

>PRK09546 zntB zinc transporter; Reviewed	Back alignment and domain information

>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional	Back alignment and domain information

>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]	Back alignment and domain information

>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional	Back alignment and domain information

>PRK09546 zntB zinc transporter; Reviewed	Back alignment and domain information

>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA)	Back alignment and domain information

>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans	Back alignment and domain information

>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]	Back alignment and domain information

>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like	Back alignment and domain information

>PRK15348 type III secretion system lipoprotein SsaJ; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		415
3rkg_A		261	Structural And Functional Characterization Of The Y		2e-06

>pdb|3RKG|A Chain A, Structural And Functional Characterization Of The Yeast Mg2+ Channel Mrs2 Length = 261

Back alignment and structure

Iteration: 1

Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 10/158 (6%) Query: 92 TILGREKAIVVSLVQIRCIITADEVILMNSLDGC------VVQYYLELCKRLQTNKDQAD 145 TI+ + IV++L+ I+ +I D+V + ++ + V+ Y LE +L + K+ + Sbjct: 64 TIMCKPNCIVINLLHIKALIERDKVYVFDTTNPSAAAKLSVLMYDLE--SKLSSTKNNSQ 121 Query: 146 DLPFEFRXXXXXXXXTCMSLDAQVKELGMEIYPVLDELASSISTLNLEHLRRLKGHLLAL 205 +E R +L+ K +L++L + ++ L L HL L Sbjct: 122 --FYEHRALESIFINVMSALETDFKLHSQICIQILNDLENEVNRLKLRHLLIKSKDLTLF 179 Query: 206 TQQVQKVHDEIEHLMDDDGDMAAMYLTEKKQRLDSSSD 243 Q+ + D ++ L+++D D+A MYLT KK D+ SD Sbjct: 180 YQKTLLIRDLLDELLENDDDLANMYLTVKKSPKDNFSD 217

PyMOL of 3rkg

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		415
3rkg_A		261	Magnesium transporter MRS2, mitochondrial; matrix	6e-50
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
2iub_A		363	CORA, divalent cation transport-related protein; m	4e-06

>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae} Length = 261	Back alignment and structure

 Score =  168 bits (427), Expect = 6e-50
 Identities = 51/209 (24%), Positives = 90/209 (43%), Gaps = 5/209 (2%)

Query: 40  TKNRGHASRSWIKIDQDGNFEIL--ELDKTTIMRHCSLPARDLRLLD-PLFIYPSTILGR 96
                    S    +  GN   +  +  K + +   SL  RDLR +D        TI+ +
Sbjct: 9   ISASDSLFISCTVFNSKGNIISMSEKFPKWSFLTEHSLFPRDLRKIDNSSIDIIPTIMCK 68

Query: 97  EKAIVVSLVQIRCIITADEVILMNSLDGCVVQYYLELCKRLQTNKDQADD--LPFEFRAL 154
              IV++L+ I+ +I  D+V + ++ +         L   L++      +    +E RAL
Sbjct: 69  PNCIVINLLHIKALIERDKVYVFDTTNPSAAAKLSVLMYDLESKLSSTKNNSQFYEHRAL 128

Query: 155 ELALELTCMSLDAQVKELGMEIYPVLDELASSISTLNLEHLRRLKGHLLALTQQVQKVHD 214
           E        +L+   K        +L++L + ++ L L HL      L    Q+   + D
Sbjct: 129 ESIFINVMSALETDFKLHSQICIQILNDLENEVNRLKLRHLLIKSKDLTLFYQKTLLIRD 188

Query: 215 EIEHLMDDDGDMAAMYLTEKKQRLDSSSD 243
            ++ L+++D D+A MYLT KK   D+ SD
Sbjct: 189 LLDELLENDDDLANMYLTVKKSPKDNFSD 217

PyMOL of 3rkg

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A Length = 363	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		415
3rkg_A		261	Magnesium transporter MRS2, mitochondrial; matrix	100.0
2iub_A		363	CORA, divalent cation transport-related protein; m	100.0
4ev6_A		339	Magnesium transport protein CORA; membrane protein	100.0
4egw_A		280	Magnesium transport protein CORA; magnesium transp	99.69
3nvo_A		264	Zinc transport protein ZNTB; alpha-beta-alpha sand	99.52
3ck6_A		252	Putative membrane transport protein; APC91421.1, Z	99.49
2bbh_A		269	Divalent cation transport-related protein; transpo	99.26
2hn1_A		266	CORA, magnesium and cobalt transporter; integral m	99.22
2iub_A		363	CORA, divalent cation transport-related protein; m	96.48
4ev6_A		339	Magnesium transport protein CORA; membrane protein	95.41
1nfn_A		191	Apolipoprotein E3; lipid transport, heparin-bindin	85.42

>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}	Back alignment and structure

Probab=100.00  E-value=5.6e-53  Score=405.98  Aligned_cols=239  Identities=28%  Similarity=0.411  Sum_probs=220.8

Q ss_pred             ccEEEEEcCCCCeeEEE--echhhhhhhcCCCccchhccCCCC-CcCceEeeecCeeEeeecceEEEEecCceEEeccCC
Q 014929           47 SRSWIKIDQDGNFEILE--LDKTTIMRHCSLPARDLRLLDPLF-IYPSTILGREKAIVVSLVQIRCIITADEVILMNSLD  123 (415)
Q Consensus        47 ~~~Wi~id~~g~~~~~e--~~k~~l~~~~~L~~RDLr~Ld~~~-~~~~~Il~Re~aivvnle~ir~IIt~d~vllf~~~~  123 (415)
                      ..+|+.||..|++..++  ++|++|++++||+|||||+|||.+ +.+|+|++|++||+||+++|||||++|+|++|++.+
T Consensus        16 ~~~ct~fD~~G~~~~~~~~~~K~~l~~~~~L~~RDLR~ld~~~~~~~PsIl~R~~aIlvnL~~irAII~~d~Vllfd~~~   95 (261)
T 3rkg_A           16 FISCTVFNSKGNIISMSEKFPKWSFLTEHSLFPRDLRKIDNSSIDIIPTIMCKPNCIVINLLHIKALIERDKVYVFDTTN   95 (261)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEHHHHHHHTTCCGGGGGGTSSCCSSCCCEEEECSSCEEEEETTEEEEECSSCEEEECCSC
T ss_pred             eEEEEEECCCCCEEEecccccHHHHHHHcCCChhhHHHhcccccCCCceEEecCCeEEEechhceEEEEcceEEEEcCCC
Confidence            57999999999999876  999999999999999999999974 466689999999999999999999999999999987


Q ss_pred             cchh----hHHHHHHHHhccCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCChhhHHHHHHHH
Q 014929          124 GCVV----QYYLELCKRLQTNKDQADDLPFEFRALELALELTCMSLDAQVKELGMEIYPVLDELASSISTLNLEHLRRLK  199 (415)
Q Consensus       124 ~~~~----~~~~~L~~rL~~~~~~~~~LpFE~raLE~iL~~~~~~Le~~~~~Le~~~~~~ld~L~~~~~~~~Le~l~~lK  199 (415)
                      +.+.    .|+.+++.|++.++  .+.+||||||||+||.++|+.|++++..++..+.++|++|++++++.+|++|+..|
T Consensus        96 ~~~~~~~~~f~~~l~~~l~~~~--~~~lPFEfraLEa~L~~v~~~Le~e~~~l~~~~~~~L~~L~~~i~~~~L~~Ll~~~  173 (261)
T 3rkg_A           96 PSAAAKLSVLMYDLESKLSSTK--NNSQFYEHRALESIFINVMSALETDFKLHSQICIQILNDLENEVNRLKLRHLLIKS  173 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCSS--CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred             chhhhhHHHHHHHHHHHhccCC--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence            6554    58899999998753  46899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCcchhHHhhhhhhhhccCCCCCCCcccccccccccccCCCCCCCCCCcchhhhhhhhh
Q 014929          200 GHLLALTQQVQKVHDEIEHLMDDDGDMAAMYLTEKKQRLDSSSDGYTQTNISSLDRVVSKSAPVSPVGSISGAQKLQRAF  279 (415)
Q Consensus       200 ~~L~~l~~~v~~vrd~l~~LlddD~dm~~m~Lt~k~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  279 (415)
                      ++|+.+.++++.||++|+++||||+||+.||||+++.                                           
T Consensus       174 k~L~~~~~kv~~vr~~leelLddDeDm~~myLT~k~~-------------------------------------------  210 (261)
T 3rkg_A          174 KDLTLFYQKTLLIRDLLDELLENDDDLANMYLTVKKS-------------------------------------------  210 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCHHHHHHTCCSSCCC-------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCHHHHHHhhccCCCC-------------------------------------------
Confidence            9999999999999999999999999999999999731                                           


Q ss_pred             cccccccCCccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 014929          280 SSIVTSKHGSLISSSSNRENVEQLEMLLEAYFVVVDNTLSKLLSLKEYIDDTEDLINIKLGNVQNQL  346 (415)
Q Consensus       280 ~~~~~s~~~~~~~~~~~~~~~eelE~LLe~Y~~~~d~~~~~l~~l~e~i~~~~d~~~~~Ld~~rN~i  346 (415)
                                      ..++++|+|||||+||+++|++.++++.++++|++|++++++.||++||++
T Consensus       211 ----------------~~~d~eElEmLLE~Y~~q~d~~~~~~~~L~~~I~~TEe~i~i~LD~~RN~L  261 (261)
T 3rkg_A          211 ----------------PKDNFSDLEMLIETYYTQCDEYVQQSESLIQDIKSTEEIVNIILDANRNSL  261 (261)
T ss_dssp             ----------------TTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred             ----------------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Confidence                            135889999999999999999999999999999999999999999999985

PyMOL of 3rkg

>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A	Back alignment and structure

>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}	Back alignment and structure

>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}	Back alignment and structure

>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A	Back alignment and structure

>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*	Back alignment and structure

>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1	Back alignment and structure

>2hn1_A CORA, magnesium and cobalt transporter; integral membrane protein fragment, metal transporter protei divalent cations, metal transport; 2.90A {Archaeoglobus fulgidus}	Back alignment and structure

>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A	Back alignment and structure

>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}	Back alignment and structure

>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		415
d2iuba2		64	f.17.3.1 (A:286-349) Magnesium transport protein C	2e-06

>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]} Length = 64	Back information, alignment and structure


class: Membrane and cell surface proteins and peptides
fold: Transmembrane helix hairpin
superfamily: Magnesium transport protein CorA, transmembrane region
family: Magnesium transport protein CorA, transmembrane region
domain: Magnesium transport protein CorA
species: Thermotoga maritima [TaxId: 2336]

 Score = 43.1 bits (102), Expect = 2e-06
 Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 8/70 (11%)

Query: 343 QNQLIQFELLLTAATFVATIFAVVTGVFGMNLKASVF-DYPSAFHWVLVITGLAGCLLYF 401
            N++++    LT    +      + G++GMN +      +   +  VL + G+   ++  
Sbjct: 2   TNEVMKV---LTIIATIFMPLTFIAGIYGMNFEYMPELRWKWGYPVVLAVMGVIAVIMV- 57

Query: 402 SFLFYFKHKK 411
               YFK KK
Sbjct: 58  ---VYFKKKK 64

PyMOL of d2iuba2

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		415
d2iuba2		64	Magnesium transport protein CorA {Thermotoga marit	99.66
d2bbha1		232	Magnesium transport protein CorA, soluble domain {	99.45
d1lrza1		65	Methicillin resistance protein FemA probable tRNA-	85.22

>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Transmembrane helix hairpin
superfamily: Magnesium transport protein CorA, transmembrane region
family: Magnesium transport protein CorA, transmembrane region
domain: Magnesium transport protein CorA
species: Thermotoga maritima [TaxId: 2336]

Probab=99.66  E-value=2.5e-17  Score=123.93  Aligned_cols=63  Identities=24%  Similarity=0.387  Sum_probs=45.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 014929          342 VQNQLIQFELLLTAATFVATIFAVVTGVFGMNLKASVFDYP-SAFHWVLVITGLAGCLLYFSFLFYFKHKK  411 (415)
Q Consensus       342 ~rN~imki~l~LtilTii~~i~t~IaGifGMN~~~~pe~~~-~gf~~v~~~~~~~~~~l~~~~~~~frrk~  411 (415)
                      |+|++||.   ||++|+++.|+|+|||+||||++++|+.++ ++|++++++++++++    ++++||||||
T Consensus         1 r~N~~mk~---lT~it~iflP~t~i~gifGMN~~~~P~~~~~~~~~~~~~~~~~~~~----~~~~~f~rkk   64 (64)
T d2iuba2           1 KTNEVMKV---LTIIATIFMPLTFIAGIYGMNFEYMPELRWKWGYPVVLAVMGVIAV----IMVVYFKKKK   64 (64)
T ss_dssp             HHHHHHHH---HHHHHHHHHHHHHHTTSCC--------------CHHHHHHHHHHHH----HHHTTTTSCC
T ss_pred             ChhHHHHH---HHHHHHHHHHHHHHHhhhccCCCCCCCCCccHHHHHHHHHHHHHHH----HHHHHHhccC
Confidence            68999996   999999999999999999999999999776 999999988887777    7888999987

PyMOL of d2iuba2

>d2bbha1 d.328.1.1 (A:13-244) Magnesium transport protein CorA, soluble domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure