Citrus Sinensis ID: 014944

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-----
Protein Sequence
MELFPAQPDLSLQISPPNSKPSSTWSSRRGAAAEEEMDLGFWKRALDSRNSSSMAAANAKPSSDISTGGGFELSLSNPARVSSSSVLSESLSSNNNLNHHHQFHLLQNNTTTTTNCNGNNIFHSFHHQQNHSQFPTHHHLHQNQHHHPVLYHQPPQQQGLSQELGFLRPIRGIPVYQNPHHHHHHHQASHAFPFPHHQQQPLDSPPPPSLVANNNTSTSSLNSFQSQQGLMRSRFMSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSDAFENGSSGDTSEDIMFGIQHPRRPETSSIQQQGRASNGLWSNSSREAWLHGKTKDSAINLPSLEEVDPKCMSYEGISDVSSPNISATSPKKPNLEFTLGRPH
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHccHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEcccccccccccEcccccccHHHccHHHHHHHccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccHHHcccccccccEEcccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHcccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccc
Coil and Loop (DISEMBL)
melfpaqpdlslqisppnskpsstwssrrgaaaeEEMDLGFWKRALdsrnsssmaaanakpssdistgggfelslsnparvsssSVLSEslssnnnlnhhhqfhllqnntttttncngnnifhsfhhqqnhsqfpthhhlhqnqhhhpvlyhqppqqqglsqelgflrpirgipvyqnphhhhhhhqashafpfphhqqqpldsppppslvannntstssLNSFQSQQGLMRsrfmsrfpakrsmraprmrwTTTLHARFVHAVELlggheratpksVLELMDVKDLTLAHVKSHLQMYRTVKTtdraaassdafengssgdtsedimfgiqhprrpetssiqqqgrasnglwsnssreawlhgktkdsainlpsleevdpkcmsyegisdvsspnisatspkkpnleftlgrph
Flexible Loop (DISEMBL)
melfpaqpdlslqisppnskpsstwssrrgAAAEEEMDLGFWKRALDSRNSSSMAAANAKPSSDISTGGGFELSLSNPARVSSSSVLSESLSSNNNLNHHHQFHLLQNNTTTTTNCNGNNIFHSFHHQQNHSQFPTHHHLHQNQHHHPVLYHQPPQQQGLSQELGFLRPIRGIPVYQNPHHHHHHHQASHAFPFPHHQQQPLDSPPPPSLVANNNTSTSSLNSFQSQQGLMRSRFMSrfpakrsmraprmRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTtdraaassdafengssgdtseDIMFGIQHPRRPETSSIQQQGRASNGLWSNSSREAWLHGktkdsainlpslEEVDPKCMSYEGISdvsspnisatspkkpnleftlgrph
Low Complexity Region (SEG)
MELFPAQPDLSLQISPPNSKPSSTWSSRRGAAAEEEMDLGFWKRALDsrnsssmaaanakpssDISTGGGFElslsnparvssssvlseslssnnnlnhhhqfhllqnntttttncngnnifhsfhhqqnhsqfPThhhlhqnqhhhPVLYHQPPQQQGLSQELGFLRPIRGIPVYQNphhhhhhhqashafpfphhqqqpldsppppslVAnnntstsslnsFQSQQGLMRSRFMSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSDAFENGSSGDTSEDIMFGIQHPRRPETSSIQQQGRASNGLWSNSSREAWLHGKTKDSAINLPSLEEVDPKCMSYEGISDVSSPNISATSPKKPNLEFTLGRPH
Disordered region (IsUnstruct)
****************************************************************************************************HQFHLLQNNTTTTTNCNGNNIFHSFHH************************************LGFLRPIRGI****************************************************************************MRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTV*****************************************************************************************************************
Disordered Region (DISOPRED)
*ELFPAQPDLSLQI**********************************************************************************************************************************************************PIRGIPVYQN************************************************************************RWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ***************************************************************************************************************FTLG***
Disordered Region (DISEMBL)
MELFPAQPDLSLQI*********************EMDLGFWKRALDS*****************STGGGFELSLS****************SNNNLNHHHQFHLLQNNTTTTTNCNGNNIFHSFHHQ******************HPVLYHQPPQQQGLSQELGFLRPIRGIPVYQN************AFPF************PPSLVANNNTSTSSLNSFQSQQGLMRSRFMSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSDAFENGSSGDTSEDIMFGIQHPR******************SNSSREAWLHGKTKDSAINLPSLEEVDPKCMSYEGISDVSSPNISATSPKKPNLEFTLGRPH
Disordered Region (DISPRO)
*ELFPAQPDLSLQISPPN*****************EMDLGFWKRALD*************************************************LN**********NTTTTTNCNGNNIFHSFHHQQNHSQFPTHHHLHQNQHHHPVLYHQPPQQQGLSQELGFLRPIRGIPVYQNPHHHHHHHQASHAFPFPHHQ*************************************************PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKT*****************************************************************************************************NLEF******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MELFPAQPDLSLQISPPNSKPSSTWSSRRGAAAEEEMDLGFWKRALDSRNSSSMAAANAKPSSDISTGGGFELSLSNPARVSSSSVLSESLSSNNNLNHHHQFHLLQNNTTTTTNCNGNNIFHSFHHQQNHSQFPTHHHLHQNQHHHPVLYHQPPQQQGLSQELGFLRPIRGIPVYQNPHHHHHHHQASHAFPFPHHQQQPLDSPPPPSLVANNNTSTSSLNSFQSQQGLMRSRFMSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSDAFENGSSGDTSEDIMFGIQHPRRPETSSIQQQGRASNGLWSNSSREAWLHGKTKDSAINLPSLEEVDPKCMSYEGISDVSSPNISATSPKKPNLEFTLGRPH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	415	2.2.26 [Sep-21-2011]
Q9C616	388	Probable transcription fa	yes	no	0.891	0.953	0.528	6e-82
Q93WJ9	403	Transcription repressor K	no	no	0.612	0.630	0.396	2e-44
Q941I2	322	Probable transcription fa	no	no	0.650	0.838	0.393	4e-43
Q0J235	532	Probable transcription fa	no	no	0.477	0.372	0.461	1e-40
Q9FJV5	276	Probable transcription fa	no	no	0.356	0.536	0.461	1e-30
Q700D9	255	Putative Myb family trans	no	no	0.142	0.231	0.661	1e-16
Q9SAK5	358	Myb family transcription	no	no	0.134	0.156	0.589	5e-13
Q8GUN5	413	Protein PHR1-LIKE 1 OS=Ar	no	no	0.132	0.133	0.636	6e-13
Q940D0	690	Two-component response re	no	no	0.134	0.081	0.508	3e-08
Q9ZWJ9	664	Two-component response re	no	no	0.137	0.085	0.482	4e-08

>sp|Q9C616|KAN2_ARATH Probable transcription factor KAN2 OS=Arabidopsis thaliana GN=KAN2 PE=2 SV=1

 Score =  305 bits (780), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 229/433 (52%), Positives = 262/433 (60%), Gaps = 63/433 (14%)

Query: 1   MELFPAQPDLSLQISPPNSKPSSTWSSRRGAAAE---EEMDLGFWKRALDSRNSSSMAAA 57
           MELFPAQPDLSLQISPPNSKPSSTW  RR    +   EE+DLGFW+RALDSR SS ++ +
Sbjct: 1   MELFPAQPDLSLQISPPNSKPSSTWQRRRSTTDQEDHEELDLGFWRRALDSRTSSLVSNS 60

Query: 58  NAKPSSDISTGGGF-ELSLSNPARVSSSSVLSESLSSNNNLNHHHQFHLLQNNTTTTTNC 116
            +K     +    F +LSLSN             +S +     HH   LL        NC
Sbjct: 61  TSK-----TINHPFQDLSLSN-------------ISHHQQQQQHHHPQLLP-------NC 95

Query: 117 NGNNIFHSFHHQQNHSQFPTHHHLHQNQHHHPVLYHQPPQQQGLSQELGFLRPIRGIPVY 176
           N +NI  SF       QFPT     Q QH    L H              LRPIRGIP+Y
Sbjct: 96  NSSNILTSF-------QFPTQ---QQQQHLQGFLAHDLNTH---------LRPIRGIPLY 136

Query: 177 QNPHHHHHHHQASHAFPFPHHQQQPLDSPPPPSLVANNNTS--TSSLNSFQS----QQGL 230
            NP  HHH H+                S      +  NN S  TSS+++        Q L
Sbjct: 137 HNPPPHHHPHRPPPPCFPFDPSSLIPSSSTSSPALTGNNNSFNTSSVSNPNYHNHHHQTL 196

Query: 231 MRSRFMSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLA 290
            R+RFM RFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLA
Sbjct: 197 NRARFMPRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLA 256

Query: 291 HVKSHLQMYRTVKTTDRAAAS---SDAFENGSSGD-TSEDIMFGIQHPRRPETSSIQQQG 346
           HVKSHLQMYRTVKTTD+AAAS   SD +ENGSSGD  S+D MF +    R ++  +    
Sbjct: 257 HVKSHLQMYRTVKTTDKAAASSGQSDVYENGSSGDNNSDDWMFDMNRKSR-DSEELTNPL 315

Query: 347 RASNGLWSNSSREAWLHGKTKDSA--INLPSLEEVDPKCMSYE--GISDVSSPNISATSP 402
             SNGLW+NSS EA LHGK  D+   I LPS +E+D KC SYE     ++SS +IS TSP
Sbjct: 316 EKSNGLWTNSSGEARLHGKLIDNVAEIMLPSEKELDGKCSSYERISSEEMSSSSISGTSP 375

Query: 403 KKPNLEFTLGRPH 415
            KPNLEFTLGR H
Sbjct: 376 FKPNLEFTLGRSH 388

Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument.
Arabidopsis thaliana (taxid: 3702)

>sp|Q93WJ9|KAN1_ARATH Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1 SV=1

 Score =  180 bits (457), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 132/333 (39%), Positives = 170/333 (51%), Gaps = 79/333 (23%)

Query: 141 HQNQHHHPVL--YHQPPQQQGLSQELGFLRPIRGIPVYQNPHHHHHHHQASHAFPFPHHQ 198
           HQ  +++P++   HQ   +  +S      RPIRGIPVY N            +FPF H Q
Sbjct: 86  HQQHYNNPIINGVHQRVDESEIS---NLHRPIRGIPVYHN-----------RSFPF-HQQ 130

Query: 199 QQPLDSPPPPSLVANN-------NTSTSSLNSFQSQQ----------------------- 228
              L     PSL   +       N+S+   N+++S Q                       
Sbjct: 131 NSSL-----PSLGGGDMDQISILNSSSGYNNAYRSLQSSPRLKGVPLHHHHHHNQYGVVG 185

Query: 229 ---------------GLMRSRFMSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERA 273
                          G++RSRF+ + P KRSMRAPRMRWT++LHARFVHAVELLGGHERA
Sbjct: 186 SSDSSSPHHHNHHHHGMIRSRFLPKMPTKRSMRAPRMRWTSSLHARFVHAVELLGGHERA 245

Query: 274 TPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSDAFENGSSGDTSEDIMFGIQH 333
           TPKSVLELMDVKDLTLAHVKSHLQMYRTVKTT++ AASSD       G    ++      
Sbjct: 246 TPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTNKPAASSDGSGEEEMGINGNEVHHQSST 305

Query: 334 PRRPET--SSIQQQGRASNG--LWSNSSREAW-LHGKTK---DSAINLPSLEEVD----P 381
            +R ++  +S+ Q+   S+    WSNSSRE W L        D+ I   S   +      
Sbjct: 306 DQRAQSDDTSLHQETDISSTQPRWSNSSRETWPLSNNCSSDIDTMIRTSSTSMISHYQRS 365

Query: 382 KCMSYEGISDVSSPNISATSPKKPNLEFTLGRP 414
              + E  S+  +      S + P+LEFTLGRP
Sbjct: 366 SIQNQEQRSNDQAKRCGNLSCENPSLEFTLGRP 398

Transcriptional repressor that regulates lateral organ polarity. Promotes lateral organ abaxial identity by repressing the adaxial regulator ASYMMETRIC LEAVES2 (AS2) in abaxial cells. Required for abaxial identity in both leaves and carpels. Functions with KAN2 in the specification of polarity of the ovule outer integument. Regulates cambium activity by repressing the auxin efflux carrier PIN1. Plays a role in lateral root formation and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q941I2|KAN3_ARATH Probable transcription factor KAN3 OS=Arabidopsis thaliana GN=KAN3 PE=2 SV=1

 Score =  176 bits (445), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 126/320 (39%), Positives = 174/320 (54%), Gaps = 50/320 (15%)

Query: 106 LQNNTTTTTNCNGNNIFHSFHHQQNHSQFPTHHHLHQNQHHHPVLYHQPPQQQGLSQELG 165
            Q+  +   N + NN+ H+     N+        ++ NQ H          ++ L Q+L 
Sbjct: 40  FQSKASDLDNKSSNNLIHTLQFTSNNEA----TKINSNQEH----------KESLDQDLR 85

Query: 166 ---FLRPIRGIPVYQNPHHHHHHHQASHAFPFPHHQQQPLDSPPPPSLVANNNTSTSSLN 222
               +RPIRGIP+YQN    H+++ ++   PF   +     +     L+ N N S +  N
Sbjct: 86  SIFMMRPIRGIPLYQNQVLDHYYYSSTSPNPFFFSEVNGQHASR--RLITNPNCSFNLHN 143

Query: 223 SFQSQQGLMRSRFMSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELM 282
             + Q      RF     AKR +RAPRMRWTTTLHA FVHAV+LLGGHERATPKSVLELM
Sbjct: 144 RHRRQAQPQPPRFT----AKRGVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELM 199

Query: 283 DVKDLTLAHVKSHLQMYRTVKTTDRAAASS--DAFENGSSGDTSEDIMFGIQHPRRPETS 340
           DV+DLTLAHVKSHLQMYRT+K+T++   SS     ENGS  ++                 
Sbjct: 200 DVQDLTLAHVKSHLQMYRTIKSTEKPTTSSGQSDCENGSQVNS----------------- 242

Query: 341 SIQQQGRASNGLWSNSSREAWLHGKTK-DSAINLPSLEE--VDPKCMSYEGISDVSSPNI 397
             +++ R   GLW+NSS EA    K K  S +++ S E    + +C S E +S  SS ++
Sbjct: 243 --EREARNLTGLWNNSSSEARFQLKAKASSGVDISSNENEWKNRRCPSNERLSSDSS-SL 299

Query: 398 SATSP--KKPNLEFTLGRPH 415
           + T P  + PNL+FTL  P+
Sbjct: 300 TGTRPETETPNLDFTLATPN 319

Probable transcription factor that regulates lateral organ polarity. Plays a role in lateral root formation and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0J235|ROLL9_ORYSJ Probable transcription factor RL9 OS=Oryza sativa subsp. japonica GN=RL9 PE=2 SV=2

 Score =  167 bits (424), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 115/249 (46%), Positives = 137/249 (55%), Gaps = 51/249 (20%)

Query: 208 PSLVANNNTSTSSLNSFQSQQGLMRSRFMSRFPAKRSMRAPRMRWTTTLHARFVHAVELL 267
           P ++   +     L+  Q   G + SRFM + PAKRSMRAPRMRWT+TLHARFVHAVELL
Sbjct: 285 PGVIGGAHHHHHHLHGGQPFVGALASRFMPKLPAKRSMRAPRMRWTSTLHARFVHAVELL 344

Query: 268 GGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSDAFENGSSGD----- 322
           GGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVK+TD+ AASS    +G SGD     
Sbjct: 345 GGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKSTDKPAASSGP-ADGGSGDEEFAG 403

Query: 323 ------TSEDIMF-------------GIQHPRRPE---TSSI----------QQQGRASN 350
                    D M                +H R       SS+             G  S 
Sbjct: 404 GGQAASGGGDSMCLRGGGGGGVAAAAFAEHGRSASEGAASSVGGGGGGDMDQSSAGNTST 463

Query: 351 GLWSNSSREAWLHGKTKD----SAINLPS-LEEVDPKCMSYEGISDVSSPNISATSPKKP 405
             WSNSSR+ WL   + +     ++ L S +E ++P C S       SS  +S      P
Sbjct: 464 TRWSNSSRDPWLSSNSCNMDAHRSVGLSSPIENLEP-CRS-------SSSQVSNHELSSP 515

Query: 406 NLEFTLGRP 414
           +LEFTLGRP
Sbjct: 516 SLEFTLGRP 524

Probable transcription factor that regulates abaxial identity during leaf development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FJV5|KAN4_ARATH Probable transcription factor KAN4 OS=Arabidopsis thaliana GN=KAN4 PE=1 SV=1

 Score =  134 bits (338), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 85/184 (46%), Positives = 110/184 (59%), Gaps = 36/184 (19%)

Query: 242 KRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 301
           KRS+RAPRMRWT+TLHA FVHAV+LLGGHERATPKSVLELM+VKDLTLAHVKSHLQMYRT
Sbjct: 100 KRSIRAPRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 159

Query: 302 VKTTDRAA-----ASSDAFENGSSGDTSEDIMFGIQHPRRPETSSIQQQGRASNGLWSNS 356
           VK TD+ +        +A +     + +E+   G      P +SS+Q+  RAS   WS  
Sbjct: 160 VKCTDKGSPGEGKVEKEAEQRIEDNNNNEEADEGTD-TNSPNSSSVQKTQRAS---WS-- 213

Query: 357 SREAWLHGKTKDSAINLPSLEEVDPKCMSYEGISDVSSPNISATSPKKP------NLEFT 410
                             S +EV  + +S +  S + + + +  + +K       NL+FT
Sbjct: 214 ------------------STKEV-SRSISTQAYSHLGTTHHTKDNEEKEDTNIHLNLDFT 254

Query: 411 LGRP 414
           LGRP
Sbjct: 255 LGRP 258

Probable transcritpion factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds.

Arabidopsis thaliana (taxid: 3702)

>sp|Q700D9|MYBF_ARATH Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=2

 Score = 88.2 bits (217), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/59 (66%), Positives = 47/59 (79%)

Query: 247 APRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTT 305
            PR+RWT  LH  FVHAV+LLGG  +ATPK VL++MDVK LT++HVKSHLQMYR  + T
Sbjct: 23  VPRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYRGSRIT 81

Putative transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SAK5|APL_ARATH Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2

 Score = 76.3 bits (186), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 33/56 (58%), Positives = 42/56 (75%)

Query: 248 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVK 303
           PR+RWT  LH RFV AV  LGG ++ATPK+++ +M VK LTL H+KSHLQ +R  K
Sbjct: 35  PRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGK 90

Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GUN5|PHL1_ARATH Protein PHR1-LIKE 1 OS=Arabidopsis thaliana GN=PHL1 PE=1 SV=1

 Score = 75.9 bits (185), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 41/55 (74%)

Query: 249 RMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVK 303
           RMRWT  LH  FV AV  LGG ERATPK+VL+L++   LT+ HVKSHLQ YRT +
Sbjct: 233 RMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPGLTIYHVKSHLQKYRTAR 287

Transcription factor acting as central integrator of phosphate starvation responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q940D0|ARR1_ARATH Two-component response regulator ARR1 OS=Arabidopsis thaliana GN=ARR1 PE=1 SV=2

 Score = 60.1 bits (144), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 38/57 (66%), Gaps = 1/57 (1%)

Query: 245 MRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 301
           ++ PR+ W+  LH +FV AV  LG  E+A PK +LELM+V  LT  +V SHLQ YR 
Sbjct: 235 LKKPRVVWSVELHQQFVAAVNQLG-VEKAVPKKILELMNVPGLTRENVASHLQKYRI 290

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZWJ9|ARR2_ARATH Two-component response regulator ARR2 OS=Arabidopsis thaliana GN=ARR2 PE=1 SV=1

 Score = 59.7 bits (143), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 39/58 (67%), Gaps = 1/58 (1%)

Query: 244 SMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 301
           S++ PR+ W+  LH +FV AV  LG  ++A PK +LE+M+V  LT  +V SHLQ YR 
Sbjct: 213 SLKKPRVVWSVELHQQFVAAVNQLG-VDKAVPKKILEMMNVPGLTRENVASHLQKYRI 269

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	415
224138212	378	predicted protein [Populus trichocarpa]	0.874	0.960	0.646	1e-119
359474536	368	PREDICTED: probable transcription factor	0.860	0.970	0.643	1e-118
131054094	402	MYB transcription factor MYB34 [Medicago	0.925	0.955	0.589	1e-107
357485075	402	Two-component response regulator EHD1 [M	0.925	0.955	0.593	1e-106
255555885	340	transcription factor, putative [Ricinus	0.787	0.961	0.621	1e-104
297742050	335	unnamed protein product [Vitis vinifera]	0.780	0.967	0.582	1e-102
356531445	390	PREDICTED: uncharacterized protein LOC10	0.881	0.938	0.572	1e-102
356497643	344	PREDICTED: LOW QUALITY PROTEIN: probable	0.797	0.962	0.539	2e-94
224071387	332	predicted protein [Populus trichocarpa]	0.742	0.927	0.619	9e-94
225454767	341	PREDICTED: probable transcription factor	0.773	0.941	0.475	1e-81

>gi|224138212|ref|XP_002326546.1| predicted protein [Populus trichocarpa] gi|222833868|gb|EEE72345.1| predicted protein [Populus trichocarpa]

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 278/430 (64%), Positives = 305/430 (70%), Gaps = 67/430 (15%)

Query: 1   MELFPAQPDLSLQISPPNSKPSSTWSSRRGAAAEEEMDLGFWKRALDSRNSSSMAAANAK 60
           MELFPAQPDLSLQISPPNSKP+STW  RR    EEEMDLGFWKRALDSRNS S     AK
Sbjct: 1   MELFPAQPDLSLQISPPNSKPTSTW--RR---TEEEMDLGFWKRALDSRNSMS---PMAK 52

Query: 61  PSSDISTGGGFELSLSNPARVSSSSVLSESLSSNNNLNHHHQFHLLQNNTTTTTNCNGNN 120
           P S       FELSLSNP RVS             N NH H      N+   T NCNGN+
Sbjct: 53  PDS------CFELSLSNP-RVSEP-----------NSNHFH------NSLQNTNNCNGNS 88

Query: 121 IFHSFHHQQNHSQFPTHHHLHQNQHHHPVLYHQPPQQQGLSQELGFLRPIRGIPVYQNPH 180
           +FHSF  Q+N    P HH  ++  +HHPVL+ QP QQ+GLSQELGFLRPIRGIPVYQNP 
Sbjct: 89  LFHSF--QKNQYTHP-HHKQNRLHNHHPVLF-QPQQQEGLSQELGFLRPIRGIPVYQNPP 144

Query: 181 HHHHHHQASHAFPFPHHQQQPLDSPP-PPSLVANNNTSTSSLNSFQSQQGLMRSRFMSRF 239
                       PFP  QQ   ++     SL   NNTS ++L+ ++SQ GLMRSRFMSRF
Sbjct: 145 ------------PFPFSQQTLYNTCSQDASLATTNNTSATTLSPYRSQ-GLMRSRFMSRF 191

Query: 240 PAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299
           PAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPK VLELMDVKDLTLAHVKSHLQMY
Sbjct: 192 PAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKLVLELMDVKDLTLAHVKSHLQMY 251

Query: 300 RTVKTTDRAAAS----SDAFENGSSGDTSEDIMFGIQHPRRPETSSIQQQGRAS------ 349
           RTVK TD+A A+    SD F+NGSSGDTSED M  IQ+PRR + S  +QQGR        
Sbjct: 252 RTVK-TDKAGAAPSAQSDVFDNGSSGDTSEDFMLDIQNPRRLDIS--KQQGRPGAHQDKD 308

Query: 350 -NGLWSN-SSREAWLHGKTKDSAINLPSLE-EVDPKCMSYE-GISDVSSPNISATSPKKP 405
            + LWSN SSREA LHGK KDS  NLPSLE +VDPKC+SYE  ISDVSS  +S TS KKP
Sbjct: 309 YHALWSNSSSREAGLHGKLKDSGGNLPSLEKDVDPKCLSYERNISDVSSSTLSGTSLKKP 368

Query: 406 NLEFTLGRPH 415
           NLEFTLGRPH
Sbjct: 369 NLEFTLGRPH 378

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474536|ref|XP_002278005.2| PREDICTED: probable transcription factor KAN2-like [Vitis vinifera]

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 274/426 (64%), Positives = 294/426 (69%), Gaps = 69/426 (16%)

Query: 1   MELFPAQPDLSLQISPPNSKPSSTWSSRRGAAAEEEMDLGFWKRALDSRNSSSMAAANAK 60
           MELFPAQPDLSLQISPPNSKPSS W  RR   AEEE+DLGFWKRALDSRNS S   +  K
Sbjct: 1   MELFPAQPDLSLQISPPNSKPSSGW--RR---AEEEVDLGFWKRALDSRNSIS---SMTK 52

Query: 61  PSSDISTGGGFELSLSNPARVSSSSVLSESLSSNNNLNHHHQFHLLQNNTTTTTNCNGNN 120
           P S       FELSLSNP   S S          NN NH   FHLLQN  T        N
Sbjct: 53  PDS------CFELSLSNPRATSES----------NNSNH---FHLLQNGNT--------N 85

Query: 121 IFHSFHHQQNHSQFPTHHHLHQNQHHHPVLYHQPPQQQGLSQELGFLRPIRGIPVYQNPH 180
           + HSF   Q        H LH              QQQG SQELGFLRPIRGIPVYQNP 
Sbjct: 86  LLHSFQQSQYPHHHHHQHQLHHQLFQ---------QQQGFSQELGFLRPIRGIPVYQNPP 136

Query: 181 HHHHHHQASHAFPFPHHQQQPLDSPPPPSLVANNNTSTSSLNSFQSQ-QGLMRSRFMSRF 239
                     +FPF    QQPLDS    S   N   +T+  + FQS  QGL+RSRF+SRF
Sbjct: 137 ----------SFPF---AQQPLDSSIASSTTTNTAATTTGSSPFQSHHQGLIRSRFLSRF 183

Query: 240 PAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299
           PAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY
Sbjct: 184 PAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 243

Query: 300 RTVKTTDRAAAS---SDAFENGSSGDTSEDIMFGIQHPRRPETSSIQQ------QGRASN 350
           RTVKTTDRAAAS   SD +ENGSSGDTSED+MF IQ+PR+ E  SIQQ      Q +  +
Sbjct: 244 RTVKTTDRAAASSGQSDVYENGSSGDTSEDVMFDIQNPRKSEL-SIQQGRPNVHQEKDYH 302

Query: 351 GLWSNSSREAWLHGKTKDSAINLPSLEE-VDPKCMSYEGISDVSSPNISATSPKKPNLEF 409
           GLWSNSSREAWLHGK +DS  N P+LEE +DPKC+SYE ISDVSS N+S TSPKKPNLEF
Sbjct: 303 GLWSNSSREAWLHGKQRDSGGNTPTLEEDMDPKCLSYERISDVSSSNLSGTSPKKPNLEF 362

Query: 410 TLGRPH 415
           TLGR H
Sbjct: 363 TLGRSH 368

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|131054094|gb|ABO32773.1| MYB transcription factor MYB34 [Medicago truncatula]

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 254/431 (58%), Positives = 292/431 (67%), Gaps = 47/431 (10%)

Query: 1   MELFPAQPDLSLQISPPNSKPSSTWSSRRGAAAEEEMDLGFWKRALDSRNSSSMAAANAK 60
           MELFPAQPDLSLQISPPN+K ++T + +R    EEEMDLGFWKRALDSRNS S + A++K
Sbjct: 1   MELFPAQPDLSLQISPPNTKQTTTSNWKRTTTTEEEMDLGFWKRALDSRNSLSSSMASSK 60

Query: 61  PSSDISTGGGFELSLSNPARVSSSSVLSESLSSNNNLNHHHQFHLLQNNTTTTTNCNGNN 120
                +    F+LSLSNP +      L  + +++NNL HHH F         +     NN
Sbjct: 61  -----TDNYSFDLSLSNPTKP-----LDSNNNTSNNLIHHHHFQ-------NSGKKKANN 103

Query: 121 IFHSFHHQQNHSQFPTHHHLHQNQHHHPVLYHQPPQQQ--GLSQELGFLRPIRGIPVYQN 178
            + SFH Q N+ Q P         H  P+  H  P QQ   LSQELGFLRPIRGIPVYQN
Sbjct: 104 PYQSFH-QNNYFQHP---------HPQPLFQHHQPHQQHQSLSQELGFLRPIRGIPVYQN 153

Query: 179 PHHHHHHHQASHAFPFPHHQQQPLDSPPPPSLVANNNTSTSSLNSFQSQQGLMRSRFMSR 238
           P         +H     H       +   PS ++N N ++SS   FQSQ  LMRSRF+SR
Sbjct: 154 PPPLSFPQLHNHNHNLNHLHILDGTTTTTPSSISNTNNTSSS--PFQSQ-ALMRSRFLSR 210

Query: 239 FPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQM 298
           FPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPK VLELMDV+DLTLAHVKSHLQM
Sbjct: 211 FPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKPVLELMDVQDLTLAHVKSHLQM 270

Query: 299 YRTVKTTDRAAAS---SDAFENGSSGDTSEDIMFGIQHPRRPETSSIQQQGRAS------ 349
           YRTVKTTDR  AS   SD ++NGSSGD S+DIMF I   RR    SI+QQGR+S      
Sbjct: 271 YRTVKTTDRVGASSGQSDVYDNGSSGDNSDDIMFDINSSRRSSDLSIKQQGRSSVNQDKE 330

Query: 350 -NGLWSNSSREAWLHGKTK-DSAINLPSLE-EVDPKCMSYEGISD-VSSPNISATSPKKP 405
             GLWSNSSREAWLHGK K DS  N+ SLE E+DPKC+SYE ISD  SS N+S +SPKKP
Sbjct: 331 CYGLWSNSSREAWLHGKPKVDSIGNMQSLEKEMDPKCLSYERISDGSSSTNLSGSSPKKP 390

Query: 406 N--LEFTLGRP 414
           N  LEFTLG+P
Sbjct: 391 NLDLEFTLGQP 401

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357485075|ref|XP_003612825.1| Two-component response regulator EHD1 [Medicago truncatula] gi|355514160|gb|AES95783.1| Two-component response regulator EHD1 [Medicago truncatula]

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 256/431 (59%), Positives = 292/431 (67%), Gaps = 47/431 (10%)

Query: 1   MELFPAQPDLSLQISPPNSKPSSTWSSRRGAAAEEEMDLGFWKRALDSRNSSSMAAANAK 60
           MELFPAQPDLSLQISPPN+K ++T + +R    EEEMDLGFWKRALDSRNS S + A++K
Sbjct: 1   MELFPAQPDLSLQISPPNTKQTTTSNWKRTTTTEEEMDLGFWKRALDSRNSLSSSMASSK 60

Query: 61  PSSDISTGGGFELSLSNPARVSSSSVLSESLSSNNNLNHHHQFHLLQNNTTTTTNCNGNN 120
                +    F+LSLSNP +      L  + +++NNL HHH F    NN           
Sbjct: 61  -----TDNYSFDLSLSNPTKP-----LDSNNNTSNNLIHHHHFQNSGNNNANNP------ 104

Query: 121 IFHSFHHQQNHSQFPTHHHLHQNQHHHPVLYHQPPQQQ--GLSQELGFLRPIRGIPVYQN 178
            + SFH Q N+ Q P         H  P+  H  P QQ   LSQELGFLRPIRGIPVYQN
Sbjct: 105 -YQSFH-QNNYFQHP---------HPQPLFQHHQPHQQHQSLSQELGFLRPIRGIPVYQN 153

Query: 179 PHHHHHHHQASHAFPFPHHQQQPLDSPPPPSLVANNNTSTSSLNSFQSQQGLMRSRFMSR 238
           P         +H     H       +   PS ++N N ++SS   FQSQ  LMRSRF+SR
Sbjct: 154 PPPLSFPQLHNHNHNLNHLHILDGTTTTTPSSISNTNNTSSS--PFQSQ-ALMRSRFLSR 210

Query: 239 FPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQM 298
           FPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQM
Sbjct: 211 FPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQM 270

Query: 299 YRTVKTTDRAAAS---SDAFENGSSGDTSEDIMFGIQHPRRPETSSIQQQGRAS------ 349
           YRTVKTTDR  AS   SD ++NGSSGD S+DIMF I   RR    SI+QQGR+S      
Sbjct: 271 YRTVKTTDRVGASSGQSDVYDNGSSGDNSDDIMFDINSSRRSSDLSIKQQGRSSVNQDKE 330

Query: 350 -NGLWSNSSREAWLHGKTK-DSAINLPSLE-EVDPKCMSYEGISD-VSSPNISATSPKKP 405
             GLWSNSSREAWLHGK K DS  N+ SLE E+DPKC+SYE ISD  SS N+S +SPKKP
Sbjct: 331 CYGLWSNSSREAWLHGKPKVDSIGNMQSLEKEMDPKCLSYERISDGSSSTNLSGSSPKKP 390

Query: 406 N--LEFTLGRP 414
           N  LEFTLG+P
Sbjct: 391 NLDLEFTLGQP 401

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555885|ref|XP_002518978.1| transcription factor, putative [Ricinus communis] gi|223541965|gb|EEF43511.1| transcription factor, putative [Ricinus communis]

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 241/388 (62%), Positives = 264/388 (68%), Gaps = 61/388 (15%)

Query: 1   MELFPAQPDLSLQISPPNSKPSSTWSSRRGAAAEEEMDLGFWKRALDSRNSSSMAAANAK 60
           MELFPAQPDLSLQISPPNSKP+STW  RR    EEE+DLGFWKRALDSR         A+
Sbjct: 1   MELFPAQPDLSLQISPPNSKPTSTW--RR---TEEEIDLGFWKRALDSR---------AR 46

Query: 61  PSSDISTGGGFELSLSNPARVSSSSVLSESLSSNNNLNHHHQFHLLQNNTTTTTNCNGNN 120
           P S       FELSLSNP R+S SS                 FHLLQN    + N NG N
Sbjct: 47  PDSSC-----FELSLSNP-RISESS---------------KHFHLLQN----SNNYNGTN 81

Query: 121 IFHSFHHQQN-HSQFPTHHHLHQNQHHHPVLYHQPPQQQGLSQELGFLRPIRGIPVYQNP 179
           +F+SF   Q  H Q P  H LHQ+  H     H   QQ GLSQ+LGFLRPIRGIPVYQNP
Sbjct: 82  LFNSFQQNQYPHHQQPKSHLLHQHSPHFQQQQHHQQQQPGLSQDLGFLRPIRGIPVYQNP 141

Query: 180 HHHHHHHQASHAFPFPHHQQQPLDSPPPPSLVANNNTSTSSLNSFQSQQGLMRSRFMSRF 239
                   +        H Q   +S    S +A NN++T+++  FQSQ GLMRSR MSRF
Sbjct: 142 PTTPPFPFS--------HPQTLDNSCSQTSSLATNNSTTTNIGHFQSQ-GLMRSRLMSRF 192

Query: 240 PAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299
           PAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY
Sbjct: 193 PAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 252

Query: 300 RTVKTTDRAAAS---SDAFENGSSGDTSEDIMFGIQHPRRPETSSIQQQGRASN------ 350
           RTVKTTDRAAAS   SD F+NGSSGDTSED+MF IQ+ RR + S   QQGR +       
Sbjct: 253 RTVKTTDRAAASSGQSDIFDNGSSGDTSEDLMFEIQNSRRSDIS--MQQGRPNGHHDKDY 310

Query: 351 -GLWSNSSREAWLHGKTKDSAINLPSLE 377
            GLWSNSSREAWLH K+KDS  NL SLE
Sbjct: 311 QGLWSNSSREAWLHVKSKDSCGNLTSLE 338

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742050|emb|CBI33837.3| unnamed protein product [Vitis vinifera]

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 248/426 (58%), Positives = 266/426 (62%), Gaps = 102/426 (23%)

Query: 1   MELFPAQPDLSLQISPPNSKPSSTWSSRRGAAAEEEMDLGFWKRALDSRNSSSMAAANAK 60
           MELFPAQPDLSLQISPPNSKPS                                      
Sbjct: 1   MELFPAQPDLSLQISPPNSKPSC------------------------------------- 23

Query: 61  PSSDISTGGGFELSLSNPARVSSSSVLSESLSSNNNLNHHHQFHLLQNNTTTTTNCNGNN 120
                     FELSLSNP   S S          NN NH   FHLLQN  T        N
Sbjct: 24  ----------FELSLSNPRATSES----------NNSNH---FHLLQNGNT--------N 52

Query: 121 IFHSFHHQQNHSQFPTHHHLHQNQHHHPVLYHQPPQQQGLSQELGFLRPIRGIPVYQNPH 180
           + HSF   Q        H LH              QQQG SQELGFLRPIRGIPVYQNP 
Sbjct: 53  LLHSFQQSQYPHHHHHQHQLHHQLFQ---------QQQGFSQELGFLRPIRGIPVYQNPP 103

Query: 181 HHHHHHQASHAFPFPHHQQQPLDSPPPPSLVANNNTSTSSLNSFQSQ-QGLMRSRFMSRF 239
                     +FPF    QQPLDS    S   N   +T+  + FQS  QGL+RSRF+SRF
Sbjct: 104 ----------SFPF---AQQPLDSSIASSTTTNTAATTTGSSPFQSHHQGLIRSRFLSRF 150

Query: 240 PAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299
           PAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY
Sbjct: 151 PAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 210

Query: 300 RTVKTTDRAAAS---SDAFENGSSGDTSEDIMFGIQHPRRPETSSIQQ------QGRASN 350
           RTVKTTDRAAAS   SD +ENGSSGDTSED+MF IQ+PR+ E  SIQQ      Q +  +
Sbjct: 211 RTVKTTDRAAASSGQSDVYENGSSGDTSEDVMFDIQNPRKSEL-SIQQGRPNVHQEKDYH 269

Query: 351 GLWSNSSREAWLHGKTKDSAINLPSLEE-VDPKCMSYEGISDVSSPNISATSPKKPNLEF 409
           GLWSNSSREAWLHGK +DS  N P+LEE +DPKC+SYE ISDVSS N+S TSPKKPNLEF
Sbjct: 270 GLWSNSSREAWLHGKQRDSGGNTPTLEEDMDPKCLSYERISDVSSSNLSGTSPKKPNLEF 329

Query: 410 TLGRPH 415
           TLGR H
Sbjct: 330 TLGRSH 335

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531445|ref|XP_003534288.1| PREDICTED: uncharacterized protein LOC100798081 [Glycine max]

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 250/437 (57%), Positives = 291/437 (66%), Gaps = 71/437 (16%)

Query: 1   MELFPAQPDLSLQISPPNSKPSSTWSSRRGAAAEEEMDLGFWKRALDSRNS-SSMAAANA 59
           MELFPAQPDLSLQISPPN+KP+S+W  RR  + EE+MDLGFWKRALDSRNS  SMA  ++
Sbjct: 1   MELFPAQPDLSLQISPPNAKPTSSW--RR--STEEDMDLGFWKRALDSRNSIQSMAKQDS 56

Query: 60  KPSSDISTGGGFELSLSNPARVSSSSVLSESLSSNNNLNHHHQFHLLQNNTTTTTNCNGN 119
                      F+LSLSNP + S ++    S ++ +NL HHH F   QN  T T      
Sbjct: 57  ----------CFDLSLSNP-KASDNNNNHHSNTTTSNLIHHHHF---QNGATPTNATTTT 102

Query: 120 NIFHSFHHQQNHSQFPTHHHLHQNQHHHPVLYHQPPQQQGLSQELGFLRPIRGIPVYQNP 179
                   Q+NH        L Q Q             Q LSQ+LGFLRPIRGIPVYQNP
Sbjct: 103 TNPFQLPFQKNHYFHQQQQPLFQPQ------------HQSLSQDLGFLRPIRGIPVYQNP 150

Query: 180 HHHHHHHQASHAFPFPHHQQQ-----PLD-SPPPPSLVANNNTSTSSLNSFQSQQGLMRS 233
                        P P  Q       PL+ S   PS+++N N  ++  +S    Q LMRS
Sbjct: 151 P------------PIPFTQHHHHHHLPLEASTTTPSIISNTNNGSTPFHS----QALMRS 194

Query: 234 RFMSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVK 293
           RF+SRFPAKRSMRAPRMRWT+TLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVK
Sbjct: 195 RFLSRFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVK 254

Query: 294 SHLQMYRTVKTTDRAAAS---SDAFENGSSGDTSEDIMFGIQHPRRPETSSIQQQGRAS- 349
           SHLQMYRTVKTTDRAAAS   SD ++NGSSGDTS+D+MF I+  RR + S   +QGR+S 
Sbjct: 255 SHLQMYRTVKTTDRAAASSGQSDVYDNGSSGDTSDDLMFDIKSSRRSDLSV--KQGRSSV 312

Query: 350 ------NGLWSNSSREAWLHGKTK-DSAINLP-SLE-EVDPKCMSYEGI-SDVSSPNISA 399
                 +GLW NSSREAWLHGKTK DS  N+P SLE E+DPKC+SYE I    SS N+S 
Sbjct: 313 NQDKEYHGLWGNSSREAWLHGKTKTDSVGNVPFSLEKEMDPKCLSYERISDGSSSSNLSG 372

Query: 400 TSPKKPN--LEFTLGRP 414
           +SPKKPN  LEF+LG+P
Sbjct: 373 SSPKKPNLDLEFSLGQP 389

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497643|ref|XP_003517669.1| PREDICTED: LOW QUALITY PROTEIN: probable transcription factor KAN2-like [Glycine max]

 Score =  352 bits (903), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 230/426 (53%), Positives = 269/426 (63%), Gaps = 95/426 (22%)

Query: 1   MELFPAQPDLSLQISPPNSKPSSTWSSRRGAAAEEEMDLGFWKRALDSRNS--SSMAAAN 58
           MELFPAQPDL L ISPPN+ P+S+W  RR  + EE+MDLGFWKRALDSRNS  S+MA  +
Sbjct: 1   MELFPAQPDLXLTISPPNANPTSSW--RR--STEEDMDLGFWKRALDSRNSIQSTMAKQD 56

Query: 59  AKPSSDISTGGGFELSLSNPARVSSSSVLSESLSSNNNLNHHHQFHLLQNNTTTTTNCNG 118
           +           F+LSLSNP           S ++N+NL HHH F             N 
Sbjct: 57  S----------CFDLSLSNP---------KASDNNNSNLIHHHHFQ----------TSNA 87

Query: 119 NNIFHSFHHQQNHSQFPTHHHLHQNQHHHPVLYHQPPQQQGLSQELGFLRPIRGIPVYQN 178
             I + F       Q P   +   +Q   P+   Q    Q LSQ+LGFLRPIRGIPVYQN
Sbjct: 88  TTIINPF-------QLPFQQNHFFHQQQQPLFQPQ---HQSLSQDLGFLRPIRGIPVYQN 137

Query: 179 PHHHHHHHQASHAFPFPHHQQQPLD-SPPPPSLVANNNTSTSSLNSFQSQQGLMRSRFMS 237
           P             PF  H   PL+ S   PS+++N NT ++  +S    Q LMRSRF+S
Sbjct: 138 PP----------PIPFTQHHHLPLEASTTTPSIISNTNTGSTPFHS----QALMRSRFLS 183

Query: 238 RFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 297
           RFPAKRSMRAPRMRWT+TLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ
Sbjct: 184 RFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 243

Query: 298 MYRTVKTTDRAAAS---SDAFENGSSGDTSEDIMFGIQHPRRPETSSIQQQGRASNGLWS 354
           MYRTVKTTDRAAAS   SD ++NGSSGDTS+D+MF I                       
Sbjct: 244 MYRTVKTTDRAAASSGQSDVYDNGSSGDTSDDLMFDI----------------------- 280

Query: 355 NSSREAWLHGKTK-DSAINLPSL--EEVDPKCMSYEGI-SDVSSPNISATSPKKPN--LE 408
              +EAWLHGKTK DS  N+PS   +E+DPKC+SYE I    SS N+S +SPKKPN  LE
Sbjct: 281 ---KEAWLHGKTKADSVGNVPSYLEKEMDPKCLSYERISDGSSSSNLSGSSPKKPNLDLE 337

Query: 409 FTLGRP 414
           F+LG+P
Sbjct: 338 FSLGQP 343

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071387|ref|XP_002303435.1| predicted protein [Populus trichocarpa] gi|222840867|gb|EEE78414.1| predicted protein [Populus trichocarpa]

 Score =  350 bits (897), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 228/368 (61%), Positives = 252/368 (68%), Gaps = 60/368 (16%)

Query: 1   MELFPAQPDLSLQISPPNSKPSSTWSSRRGAAAEEEMDLGFWKRALDSRNSSSMAAANAK 60
           MELFPAQPDLSLQISPPNSKP+STW  RR    EEEMDLGFW RALDSRNS S   + AK
Sbjct: 1   MELFPAQPDLSLQISPPNSKPTSTW--RR---TEEEMDLGFWTRALDSRNSIS---SMAK 52

Query: 61  PSSDISTGGGFELSLSNPARVSSSSVLSESLSSNNNLNHHHQFHLLQNNTTTTTNCNGNN 120
           P +       FELSLSNP              S  N NH H  ++LQN+     N    N
Sbjct: 53  PDT------CFELSLSNPK------------VSEPNSNHFH--NILQNSNNCNGN----N 88

Query: 121 IFHSFHHQQNHSQFPTHHHLHQNQHHHPVLYHQPPQQQGLSQELGFLRPIRGIPVYQNPH 180
           +FHSF   Q       HH  +   +HHPVL+ Q  QQQGLSQELGFLRPIRGIPVYQNP 
Sbjct: 89  LFHSFQQNQYTH---HHHQQNHLHNHHPVLFQQQ-QQQGLSQELGFLRPIRGIPVYQNPP 144

Query: 181 HHHHHHQASHAFPFPHHQQQPLDSPPPPSLVANNNTSTSSLNSFQSQQGLMRSRFMSRFP 240
                       PFP  QQ   ++    S +A NN+S +S++ +QSQ G MRSRFMSRFP
Sbjct: 145 S-----------PFPFSQQTFDNTCSQASSLAANNSSATSISPYQSQ-GSMRSRFMSRFP 192

Query: 241 AKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYR 300
           AKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYR
Sbjct: 193 AKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYR 252

Query: 301 TVKTTDRAAAS---SDAFENGSSGDTSEDIMFGIQHPRRPETSSIQQQGRAS-------N 350
           TVKTTDRAAA    SD F+NGSSGDTSED++F I++PRR E S   QQGR +        
Sbjct: 253 TVKTTDRAAAPSALSDVFDNGSSGDTSEDLVFDIENPRRSEMS--MQQGRPNAHQDKDYQ 310

Query: 351 GLWSNSSR 358
            LWSNSSR
Sbjct: 311 ALWSNSSR 318

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454767|ref|XP_002272637.1| PREDICTED: probable transcription factor KAN2-like [Vitis vinifera]

 Score =  310 bits (793), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 205/431 (47%), Positives = 245/431 (56%), Gaps = 110/431 (25%)

Query: 1   MELFPAQPDLSLQISPPNSKPSSTWSSRRGAAAEEEMDLGFWKRALDSRNSSSMAAANAK 60
           MELFPAQPDLSLQISPPN+KP+S+WS R      +E DLGFW+ ++DS  ++    ++ K
Sbjct: 1   MELFPAQPDLSLQISPPNTKPTSSWSRR----DHQEADLGFWRSSMDSNKAT---PSSRK 53

Query: 61  PSSDISTGGGFELSLSNPARVSSSSVLSESLSSNNNLNHHHQFHLLQNNTTTTTNCNGNN 120
           P +        +LSL+NP  +  SS            NH H  H                
Sbjct: 54  PDT------ASDLSLANPKALEPSS------------NHIHALH---------------- 79

Query: 121 IFHSFHHQQNHSQFPTHH------HLHQNQHHHPVLYHQPPQQQGLSQELGFLRPIRGIP 174
                         P +H       L Q  HHH         Q+GL Q++GFLRPIRGIP
Sbjct: 80  --------------PKYHTLLAPPQLQQKYHHH---------QEGLHQQIGFLRPIRGIP 116

Query: 175 VYQNPHHHHHHHQASHAFPFPHHQQQPLDSPPPPSLVANNNTSTSSLNSFQSQQGLMRSR 234
           +YQ+            +F FPH  Q  LDS P       +  ST+  NS     GL RSR
Sbjct: 117 IYQS---------TPPSFSFPH--QHSLDSSP-------STISTTCFNS----NGLQRSR 154

Query: 235 FMSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKS 294
           F+SRFP KRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKS
Sbjct: 155 FISRFPTKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKS 214

Query: 295 HLQMYRTVKTTDRAAASS---DAFENGSSGDTSEDIMFGIQHPRRPETSSIQQQGRA--- 348
           HLQMYRT+KTTDR  ASS   D  E   +G+ SED M  I+  + P+   +  Q R    
Sbjct: 215 HLQMYRTIKTTDRPPASSGQLDGLEGRLAGELSEDNMVDIE--KNPQRCELVHQSRLGFD 272

Query: 349 ----SNGLWSNSSR-EAWLHGKTKDSAINLPSLEEVDPKCMSYEGIS-DVSSPNISATSP 402
               S  LW NSSR +AWLHGK +DS  +    E+      S+E +  DV+S + S  SP
Sbjct: 273 QDLDSCSLWKNSSRDDAWLHGKPRDSRGSTTPFEDT----ASHERVVMDVNSTSFSRMSP 328

Query: 403 KKPNLEFTLGR 413
           KKPNLEFTLGR
Sbjct: 329 KKPNLEFTLGR 339

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	415
TAIR|locus:2028346	388	KAN2 "AT1G32240" [Arabidopsis	0.450	0.481	0.709	2.6e-87
TAIR|locus:2171427	403	KAN "KANADI" [Arabidopsis thal	0.448	0.461	0.530	6.4e-50
UNIPROTKB|Q0J235	532	RL9 "Probable transcription fa	0.224	0.174	0.829	9e-49
TAIR|locus:505006489	322	KAN3 "AT4G17695" [Arabidopsis	0.383	0.493	0.489	3.7e-46
TAIR|locus:2163852	276	ATS "AT5G42630" [Arabidopsis t	0.368	0.554	0.469	1.1e-33
TAIR|locus:2042927	340	AT2G38300 "AT2G38300" [Arabido	0.277	0.338	0.448	8.3e-19
TAIR|locus:2063141	410	AT2G40260 "AT2G40260" [Arabido	0.349	0.353	0.379	1.2e-17
TAIR|locus:2041145	256	AT2G02060 [Arabidopsis thalian	0.190	0.308	0.541	1.6e-17
TAIR|locus:2204518	255	AT1G14600 "AT1G14600" [Arabido	0.156	0.254	0.636	4.1e-17
TAIR|locus:2041539	255	AT2G42660 "AT2G42660" [Arabido	0.171	0.278	0.563	1.8e-16

TAIR|locus:2028346 KAN2 "AT1G32240" [Arabidopsis thaliana (taxid:3702)]

 Score = 648 (233.2 bits), Expect = 2.6e-87, Sum P(3) = 2.6e-87
 Identities = 139/196 (70%), Positives = 154/196 (78%)

Query:   228 QGLMRSRFMSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDL 287
             Q L R+RFM RFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDL
Sbjct:   194 QTLNRARFMPRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDL 253

Query:   288 TLAHVKSHLQMYRTVKTTDRAAASS---DAFENGSSGDT-SEDIMFGIQHPRRPETSSIQ 343
             TLAHVKSHLQMYRTVKTTD+AAASS   D +ENGSSGD  S+D MF +    R ++  + 
Sbjct:   254 TLAHVKSHLQMYRTVKTTDKAAASSGQSDVYENGSSGDNNSDDWMFDMNRKSR-DSEELT 312

Query:   344 QQGRASNGLWSNSSREAWLHGKTKDSA--INLPSLEEVDPKCMSYEGIS--DVSSPNISA 399
                  SNGLW+NSS EA LHGK  D+   I LPS +E+D KC SYE IS  ++SS +IS 
Sbjct:   313 NPLEKSNGLWTNSSGEARLHGKLIDNVAEIMLPSEKELDGKCSSYERISSEEMSSSSISG 372

Query:   400 TSPKKPNLEFTLGRPH 415
             TSP KPNLEFTLGR H
Sbjct:   373 TSPFKPNLEFTLGRSH 388

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0048440 "carpel development" evidence=IGI

GO:0048481 "ovule development" evidence=IGI

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=IGI

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

TAIR|locus:2171427 KAN "KANADI" [Arabidopsis thaliana (taxid:3702)]

 Score = 448 (162.8 bits), Expect = 6.4e-50, Sum P(3) = 6.4e-50
 Identities = 105/198 (53%), Positives = 126/198 (63%)

Query:   229 GLMRSRFMSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLT 288
             G++RSRF+ + P KRSMRAPRMRWT++LHARFVHAVELLGGHERATPKSVLELMDVKDLT
Sbjct:   201 GMIRSRFLPKMPTKRSMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLT 260

Query:   289 LAHVKSHLQMYRTVKTTDRAAASSDAF---ENGSSGDTSEDIMFGIQHPRRPETSSIQQQ 345
             LAHVKSHLQMYRTVKTT++ AASSD     E G +G+         Q  +  +TS  Q+ 
Sbjct:   261 LAHVKSHLQMYRTVKTTNKPAASSDGSGEEEMGINGNEVHHQSSTDQRAQSDDTSLHQET 320

Query:   346 GRASNG-LWSNSSREAW-LHGKTK---DSAINLPSLEEVD----PKCMSYEGISDVSSPN 396
               +S    WSNSSRE W L        D+ I   S   +         + E  S+  +  
Sbjct:   321 DISSTQPRWSNSSRETWPLSNNCSSDIDTMIRTSSTSMISHYQRSSIQNQEQRSNDQAKR 380

Query:   397 ISATSPKKPNLEFTLGRP 414
                 S + P+LEFTLGRP
Sbjct:   381 CGNLSCENPSLEFTLGRP 398

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009887 "organ morphogenesis" evidence=IMP

GO:0009956 "radial pattern formation" evidence=IMP

GO:0010051 "xylem and phloem pattern formation" evidence=IMP

GO:0010158 "abaxial cell fate specification" evidence=IMP

GO:0048440 "carpel development" evidence=IGI

GO:0048481 "ovule development" evidence=IGI

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=IGI

GO:0009943 "adaxial/abaxial axis specification" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q0J235 RL9 "Probable transcription factor RL9" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 394 (143.8 bits), Expect = 9.0e-49, Sum P(3) = 9.0e-49
 Identities = 78/94 (82%), Positives = 84/94 (89%)

Query:   229 GLMRSRFMSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLT 288
             G + SRFM + PAKRSMRAPRMRWT+TLHARFVHAVELLGGHERATPKSVLELMDVKDLT
Sbjct:   306 GALASRFMPKLPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLT 365

Query:   289 LAHVKSHLQMYRTVKTTDRAAASSDAFENGSSGD 322
             LAHVKSHLQMYRTVK+TD+ AASS   + GS GD
Sbjct:   366 LAHVKSHLQMYRTVKSTDKPAASSGPADGGS-GD 398

GO:0005634 "nucleus" evidence=IDA

GO:0010158 "abaxial cell fate specification" evidence=IMP

GO:0010229 "inflorescence development" evidence=IMP

TAIR|locus:505006489 KAN3 "AT4G17695" [Arabidopsis thaliana (taxid:3702)]

 Score = 375 (137.1 bits), Expect = 3.7e-46, Sum P(3) = 3.7e-46
 Identities = 90/184 (48%), Positives = 119/184 (64%)

Query:   238 RFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 297
             RF AKR +RAPRMRWTTTLHA FVHAV+LLGGHERATPKSVLELMDV+DLTLAHVKSHLQ
Sbjct:   155 RFTAKRGVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQ 214

Query:   298 MYRTVKTTDRAAASSDAF--ENGSSGDTSEDI--MFGIQHPRRPETSSIQQQGRASNGLW 353
             MYRT+K+T++   SS     ENGS  ++  +   + G+ +    E +  Q + +AS+G+ 
Sbjct:   215 MYRTIKSTEKPTTSSGQSDCENGSQVNSEREARNLTGLWNNSSSE-ARFQLKAKASSGVD 273

Query:   354 SNSSREAWLHGKTKDSAINLPSLEEVDPKCMSYEGISDVSSPNISATSPKK--PNLEFTL 411
              +S+   W   K +              +C S E +S  SS +++ T P+   PNL+FTL
Sbjct:   274 ISSNENEW---KNR--------------RCPSNERLSSDSS-SLTGTRPETETPNLDFTL 315

Query:   412 GRPH 415
               P+
Sbjct:   316 ATPN 319

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2163852 ATS "AT5G42630" [Arabidopsis thaliana (taxid:3702)]

 Score = 334 (122.6 bits), Expect = 1.1e-33, Sum P(2) = 1.1e-33
 Identities = 84/179 (46%), Positives = 107/179 (59%)

Query:   242 KRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 301
             KRS+RAPRMRWT+TLHA FVHAV+LLGGHERATPKSVLELM+VKDLTLAHVKSHLQMYRT
Sbjct:   100 KRSIRAPRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 159

Query:   302 VKTTDRAA-----ASSDAFENGSSGDTSEDIMFGIQHPRRPETSSIQQQGRASNGLWSNS 356
             VK TD+ +        +A +     + +E+   G      P +SS+Q+  RAS   WS+ 
Sbjct:   160 VKCTDKGSPGEGKVEKEAEQRIEDNNNNEEADEGTD-TNSPNSSSVQKTQRAS---WSS- 214

Query:   357 SREAWLHGKTKDSAINLPSLEEVDPKCMSYEGISDVSSPNISATSPK-KPNLEFTLGRP 414
                      TK+ +        +  +  S+ G +  +  N          NL+FTLGRP
Sbjct:   215 ---------TKEVS------RSISTQAYSHLGTTHHTKDNEEKEDTNIHLNLDFTLGRP 258

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP;TAS

GO:0048481 "ovule development" evidence=IMP

GO:0080060 "integument development" evidence=IGI;IMP

GO:0005618 "cell wall" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

TAIR|locus:2042927 AT2G38300 "AT2G38300" [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 57/127 (44%), Positives = 75/127 (59%)

Query:   240 PAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299
             P  RS + PR+RWT  LH RFV AVE LGG ERATPK V ++M++K L++AHVKSHLQMY
Sbjct:    48 PYVRS-KVPRLRWTPDLHLRFVRAVERLGGQERATPKLVRQMMNIKGLSIAHVKSHLQMY 106

Query:   300 RTVKTTDRA---AASSDAFENGSSGDT---SEDIMF-GIQHPRRPETSSIQQQGRASNG- 351
             R+ K  D+    A     FE  +  +    S+  MF G  H      S  +   + SN  
Sbjct:   107 RSKKIDDQGQAIAGHKHLFETSTDRNIYKLSQLPMFRGYNHNH---DSPFRYGSKISNAS 163

Query:   352 LWSNSSR 358
             LW++SS+
Sbjct:   164 LWNSSSQ 170

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2063141 AT2G40260 "AT2G40260" [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 60/158 (37%), Positives = 89/158 (56%)

Query:   240 PAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299
             P  RS + PR+RWT  LH  F+ AVE LGG +RATPK VL+LM+VK L++AHVKSHLQMY
Sbjct:    76 PYNRS-KTPRLRWTPELHICFLQAVERLGGPDRATPKLVLQLMNVKGLSIAHVKSHLQMY 134

Query:   300 RTVKTTDRAAASSD-AFENGSSGDTSEDIMFGIQH-PRRPETSSIQQQGRASNGLWSNSS 357
             R+ KT +        +FE+G+    +   +  +Q   +RP +SS+   G    G W++  
Sbjct:   135 RSKKTDEPNEGDQGFSFEHGAGYTYNLSQLPMLQSFDQRP-SSSLGYGG----GSWTDHR 189

Query:   358 REA----WLHGKTKDSAINLPSLEEVDPKCMSYEGISD 391
             R+     W    T+++     ++    P    Y G+S+
Sbjct:   190 RQIYRSPWRGLTTRENTRTRQTMFSSQPG-ERYHGVSN 226

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2041145 AT2G02060 [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 46/85 (54%), Positives = 60/85 (70%)

Query:   233 SRFMSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHV 292
             ++F    P  RS   PR+RWT  LH  FVHAVE+LGG  RATPK VL++MDVK LT++HV
Sbjct:    16 NKFHGVRPYVRSP-VPRLRWTPDLHRCFVHAVEILGGQHRATPKLVLKMMDVKGLTISHV 74

Query:   293 KSHLQMYR-----TVKTTDRAAASS 312
             KSHLQMYR     T++  + +++SS
Sbjct:    75 KSHLQMYRGGSKLTLEKPEESSSSS 99

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2204518 AT1G14600 "AT1G14600" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 42/66 (63%), Positives = 50/66 (75%)

Query:   240 PAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY 299
             P  RS   PR+RWT  LH  FVHAV+LLGG  +ATPK VL++MDVK LT++HVKSHLQMY
Sbjct:    17 PYVRSP-VPRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMY 75

Query:   300 RTVKTT 305
             R  + T
Sbjct:    76 RGSRIT 81

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2041539 AT2G42660 "AT2G42660" [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 40/71 (56%), Positives = 51/71 (71%)

Query:   248 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDR 307
             PR+RWT  LH  FV AV+ LGG +RATPK VLE+M++K L++AHVKSHLQMYR+ K    
Sbjct:    51 PRLRWTPDLHLSFVRAVQRLGGPDRATPKLVLEMMNLKGLSIAHVKSHLQMYRSKKLEPS 110

Query:   308 AAASSDAFENG 318
             +     AF +G
Sbjct:   111 SRPGFGAFMSG 121

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C616	KAN2_ARATH	No assigned EC number	0.5288	0.8915	0.9536	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00290237 hypothetical protein (378 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	415
TIGR01557	57	TIGR01557, myb_SHAQKYF, myb-like DNA-binding domai	5e-19
PLN03162	526	PLN03162, PLN03162, golden-2 like transcription fa	5e-08
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	1e-04
pfam14179	110	pfam14179, YppG, YppG-like protein	4e-04
pfam04592	238	pfam04592, SelP_N, Selenoprotein P, N terminal reg	0.002

>gnl|CDD|130620 TIGR01557, myb_SHAQKYF, myb-like DNA-binding domain, SHAQKYF class

 Score = 80.1 bits (198), Expect = 5e-19
 Identities = 31/54 (57%), Positives = 36/54 (66%)

Query: 248 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 301
           PR+ WT  LH RF+ AV+ LGG + ATPK +LELM V  LT   V SHLQ YR 
Sbjct: 2   PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL 55

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif. Length = 57

>gnl|CDD|178707 PLN03162, PLN03162, golden-2 like transcription factor; Provisional

 Score = 54.8 bits (131), Expect = 5e-08
 Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 6/90 (6%)

Query: 212 ANNNTSTSSLNSFQSQQGLMRSRFMSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHE 271
           A+++   SS++   +Q      +  +  P K+     ++ WT  LH RFVHAVE LG  E
Sbjct: 205 ASDSGECSSVDRKDNQASPKSCK--NAAPGKKK---AKVDWTPELHRRFVHAVEQLG-VE 258

Query: 272 RATPKSVLELMDVKDLTLAHVKSHLQMYRT 301
           +A P  +LELM V+ LT  ++ SHLQ YR+
Sbjct: 259 KAFPSRILELMGVQCLTRHNIASHLQKYRS 288

Length = 526

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 39.0 bits (92), Expect = 1e-04
 Identities = 9/52 (17%), Positives = 15/52 (28%), Gaps = 5/52 (9%)

Query: 249 RMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYR 300
           R  WT       + AV+  G         + + +     T    K+    Y 
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGN---WSKIAKHL--PGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|222579 pfam14179, YppG, YppG-like protein

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 18/83 (21%), Positives = 23/83 (27%), Gaps = 13/83 (15%)

Query: 130 NHSQFPTHHHLHQNQHHHPVLYHQPPQQQGLSQELGFLRPIRGIPVYQNPHHHHHHHQAS 189
           N  Q  T+ +  QNQ   P       QQ                P Y  P     H    
Sbjct: 1   NPYQQNTNQYPPQNQQQQPYQQQPYHQQMPP-------------PPYSPPQQQQGHFMPP 47

Query: 190 HAFPFPHHQQQPLDSPPPPSLVA 212
              P+P    Q    P   S ++
Sbjct: 48  QPQPYPKQSPQQQQPPQFSSFLS 70

The YppG-like protein family includes the B. subtilis YppG protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 115 and 181 amino acids in length. There are two completely conserved residues (F and G) that may be functionally important. Length = 110

>gnl|CDD|218163 pfam04592, SelP_N, Selenoprotein P, N terminal region

 Score = 39.1 bits (91), Expect = 0.002
 Identities = 18/79 (22%), Positives = 23/79 (29%), Gaps = 7/79 (8%)

Query: 108 NNTTTTTNCNGNNIFHSFHHQQNHSQFPTHHHLHQNQHHHPVLYHQPPQQQGLSQELGFL 167
              T  T            H  +HS      H H + H H    H        SQ+    
Sbjct: 166 KKVTLATVNKPVEAEPRQDHPHHHSHHEHQGHAHHHPHGHH---HPGSNSHSESQQPDPD 222

Query: 168 RPIRGIPVYQNPHHHHHHH 186
           +P           HHHH+H
Sbjct: 223 KPTEPPS----GLHHHHNH 237

SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma. It is thought to be glycosylated. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage. The promoter structure of bovine SelP suggest that it may be involved in countering heavy metal intoxication, and may also have a developmental function. The N-terminal region of SelP can exist independently of the C terminal region. Zebrafish selenoprotein Pb lacks the C terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported. N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N terminal region may adopt a thioredoxin fold and catalyze redox reactions. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP. The function of the bacterial members of this family is uncharcterised. Length = 238

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	415
PLN03162	526	golden-2 like transcription factor; Provisional	99.88
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	99.84
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	97.12
PF14379	51	Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE mot	96.86
smart00426	68	TEA TEA domain.	86.47

>PLN03162 golden-2 like transcription factor; Provisional

Probab=99.88  E-value=1.3e-23  Score=209.83  Aligned_cols=63  Identities=46%  Similarity=0.729  Sum_probs=59.1

Q ss_pred             ccCCCCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHhhcCCCCccHHHHHHhhccccccccc
Q 014944          242 KRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTT  305 (415)
Q Consensus       242 krs~kKpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~ILelM~V~gLTr~hVkSHLQKYRl~k~t  305 (415)
                      ....||+||+||+|||+|||+||++|| .++||||+||++|+|+|||++||||||||||+.++.
T Consensus       230 ~~g~KKpRLrWTpELH~rFVeAV~qLG-~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~  292 (526)
T PLN03162        230 APGKKKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRH  292 (526)
T ss_pred             CCCCCCCcccCCHHHHHHHHHHHHHhC-cCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhccc
Confidence            345789999999999999999999998 799999999999999999999999999999998764

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=99.84  E-value=2.1e-21  Score=148.39  Aligned_cols=56  Identities=55%  Similarity=0.844  Sum_probs=54.1

Q ss_pred             CCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHhhcCCCCccHHHHHHhhcccccc
Q 014944          247 APRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTV  302 (415)
Q Consensus       247 KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~ILelM~V~gLTr~hVkSHLQKYRl~  302 (415)
                      |+|++||+|+|++||+||+.||+.+.|+||.|+++|++.+||+.+|+|||||||+.
T Consensus         1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k   56 (57)
T TIGR01557         1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK   56 (57)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            68999999999999999999998789999999999999999999999999999985

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=97.12  E-value=0.00073  Score=48.78  Aligned_cols=48  Identities=23%  Similarity=0.261  Sum_probs=41.3

Q ss_pred             CcccCHHHHHHHHHHHHHhCCCCCCChhHHHhhcCCCCccHHHHHHhhcccc
Q 014944          249 RMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYR  300 (415)
Q Consensus       249 RlrWT~ELH~rFV~AV~qLGG~dkAtPK~ILelM~V~gLTr~hVkSHLQKYR  300 (415)
                      |..||+|=+.+|++||.++|.   -.-+.|.+.|+ .+-|..+|++|.++|+
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~---~~W~~Ia~~~~-~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGK---DNWKKIAKRMP-GGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTT---THHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCC---cHHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence            568999999999999999992   26889999998 8999999999999885

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif

Probab=96.86  E-value=4.7e-05  Score=58.69  Aligned_cols=34  Identities=21%  Similarity=0.299  Sum_probs=27.9

Q ss_pred             CCchhhhhhccCCCCCC-CC--------chhhhcCcccCCccc
Q 014944          321 GDTSEDIMFGIQHPRRP-ET--------SSIQQQGRASNGLWS  354 (415)
Q Consensus       321 g~~sEAL~lQmEvQrRL-E~--------~sIeqQGr~~q~LWS  354 (415)
                      ..++|||++|||||||| |+        ++||++|||++.+..
T Consensus         2 ~~i~EALr~QmEvQrrLhEQLEvQr~Lqlrieaqgkyl~~ile   44 (51)
T PF14379_consen    2 MQITEALRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILE   44 (51)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            35789999999999998 32        589999999877653

>smart00426 TEA TEA domain

Probab=86.47  E-value=0.77  Score=37.64  Aligned_cols=46  Identities=24%  Similarity=0.353  Sum_probs=30.6

Q ss_pred             ccCHHHHHHHHHHHHHhCCCCCCChh-HHHhh--c-C-----------C--CCccHHHHHHhhcc
Q 014944          251 RWTTTLHARFVHAVELLGGHERATPK-SVLEL--M-D-----------V--KDLTLAHVKSHLQM  298 (415)
Q Consensus       251 rWT~ELH~rFV~AV~qLGG~dkAtPK-~ILel--M-~-----------V--~gLTr~hVkSHLQK  298 (415)
                      +|.++|-..|++|++..-  ...+=| +++..  | +           .  .-=|+.+|+||||.
T Consensus         5 vWp~~lE~Af~~aL~~~~--~~g~~kik~~~r~k~~gRNelIs~YI~~~tGk~Rt~KQVsShIQv   67 (68)
T smart00426        5 VWSPDIEQAFQEALAIYP--PCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQV   67 (68)
T ss_pred             cCcHHHHHHHHHHHHHcC--ccCcccchhhhcCcccchhHHHHHHHHHHhCCccchhhhcchhee
Confidence            799999999999999874  223322 22211  0 0           1  23578899999985

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	415
1irz_A	64	Solution Structure Of Arr10-B Belonging To The Garp		2e-08

>pdb|1IRZ|A Chain A, Solution Structure Of Arr10-B Belonging To The Garp Family Of Plant Myb-Related Dna Binding Motifs Of The Arabidopsis Response Regulators Length = 64

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/57 (49%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 244 SMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYR 300
           + + PR+ WT  LH +F+ AV+ LG  ERA PK +L+LM+V  LT  +V SHLQ +R
Sbjct: 2   AQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFR 57

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	415
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	1e-18

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Length = 64

 Score = 78.4 bits (193), Expect = 1e-18
 Identities = 28/58 (48%), Positives = 39/58 (67%), Gaps = 1/58 (1%)

Query: 244 SMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 301
           + + PR+ WT  LH +F+ AV+ LG  ERA PK +L+LM+V  LT  +V SHLQ +R 
Sbjct: 2   AQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRV 58

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	415
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	99.94
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	88.58
2hzd_A	82	Transcriptional enhancer factor TEF-1; DNA-binding	88.49
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	82.65
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	81.73

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=99.94  E-value=2.7e-28  Score=190.12  Aligned_cols=60  Identities=47%  Similarity=0.790  Sum_probs=57.1

Q ss_pred             CCCCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHhhcCCCCccHHHHHHhhcccccccc
Q 014944          244 SMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKT  304 (415)
Q Consensus       244 s~kKpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~ILelM~V~gLTr~hVkSHLQKYRl~k~  304 (415)
                      +.+|+||+||+|||++||+||++|| .++|+||+||++|+|+|||++||||||||||+..+
T Consensus         2 ~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~   61 (64)
T 1irz_A            2 AQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALK   61 (64)
T ss_dssp             CCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence            4789999999999999999999999 79999999999999999999999999999999754

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=88.58  E-value=1.1  Score=35.23  Aligned_cols=52  Identities=15%  Similarity=0.119  Sum_probs=41.4

Q ss_pred             CCCCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHhhcCCCCccHHHHHHhhccccc
Q 014944          244 SMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT  301 (415)
Q Consensus       244 s~kKpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~ILelM~V~gLTr~hVkSHLQKYRl  301 (415)
                      ..+..+-.||.|=+.+|++||+..|+-    =+.|-+.|+  +=|..+|+.|-++|-+
T Consensus        13 ~~~~~~~~WT~eEd~~Ll~~v~~~G~~----W~~IA~~v~--~RT~~qcr~r~~~~~i   64 (79)
T 2yus_A           13 KGASAGREWTEQETLLLLEALEMYKDD----WNKVSEHVG--SRTQDECILHFLRLPI   64 (79)
T ss_dssp             CSSCCSCCCCHHHHHHHHHHHHHSSSC----HHHHHHHHS--SCCHHHHHHHHTTSCC
T ss_pred             cccccCCCcCHHHHHHHHHHHHHhCCC----HHHHHHHcC--CCCHHHHHHHHHHhcc
Confidence            344456789999999999999999942    366777764  7899999999888733

>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}

Probab=88.49  E-value=0.28  Score=40.04  Aligned_cols=56  Identities=23%  Similarity=0.298  Sum_probs=37.4

Q ss_pred             CCcccCHHHHHHHHHHHHHhCCCCCCChhHHHhh---c-C-------------CCCccHHHHHHhhccccccccc
Q 014944          248 PRMRWTTTLHARFVHAVELLGGHERATPKSVLEL---M-D-------------VKDLTLAHVKSHLQMYRTVKTT  305 (415)
Q Consensus       248 pRlrWT~ELH~rFV~AV~qLGG~dkAtPK~ILel---M-~-------------V~gLTr~hVkSHLQKYRl~k~t  305 (415)
                      ..-+|.++|-..|++|++..- . .-+=|.+|..   | |             -+-=|+.+|+||||.-|..+..
T Consensus         5 ~e~vW~~~lE~aF~eaL~~yp-~-~g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~~~   77 (82)
T 2hzd_A            5 AEGVWSPDIEQSFQEALSIYP-P-CGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKSR   77 (82)
T ss_dssp             GSCCSCHHHHHHHHHHHHHSC-S-SSCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHHTT
T ss_pred             cCCcCCHHHHHHHHHHHHHcC-C-CCccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHHhh
Confidence            456899999999999999884 1 1122332311   1 1             1446888999999987776543

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=82.65  E-value=1.8  Score=32.83  Aligned_cols=53  Identities=15%  Similarity=0.181  Sum_probs=40.2

Q ss_pred             CCcccCHHHHHHHHHHHHHhCCCCCCCh---hHHHhhcCCCCccHHHHHHhhccccccc
Q 014944          248 PRMRWTTTLHARFVHAVELLGGHERATP---KSVLELMDVKDLTLAHVKSHLQMYRTVK  303 (415)
Q Consensus       248 pRlrWT~ELH~rFV~AV~qLGG~dkAtP---K~ILelM~V~gLTr~hVkSHLQKYRl~k  303 (415)
                      .+-.||.|=+++|++||+.+| .+...|   +.|-+.|  ++=|..+|+.|-|+|-...
T Consensus         7 ~~~~WT~eEd~~L~~~v~~~g-~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~~   62 (75)
T 2yum_A            7 GNQLWTVEEQKKLEQLLIKYP-PEEVESRRWQKIADEL--GNRTAKQVASQVQKYFIKL   62 (75)
T ss_dssp             CSSCCCHHHHHHHHHHHHHSC-CCSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGGG
T ss_pred             CCCCCCHHHHHHHHHHHHHhC-CCCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHHH
Confidence            345799999999999999998 222122   3455555  6899999999999986643

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=81.73  E-value=2.7  Score=31.83  Aligned_cols=50  Identities=22%  Similarity=0.291  Sum_probs=40.3

Q ss_pred             CCcccCHHHHHHHHHHHHHhCCCCCCChhHHHhhcCCCCccHHHHHHhhccccccc
Q 014944          248 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVK  303 (415)
Q Consensus       248 pRlrWT~ELH~rFV~AV~qLGG~dkAtPK~ILelM~V~gLTr~hVkSHLQKYRl~k  303 (415)
                      .+-.||.|=++.|+++|+++|-    .=+.|-..|  +|=|..+|+.|-++|-..+
T Consensus         8 ~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~--~~Rt~~q~k~r~~~~l~~~   57 (72)
T 2cu7_A            8 YSVKWTIEEKELFEQGLAKFGR----RWTKISKLI--GSRTVLQVKSYARQYFKNK   57 (72)
T ss_dssp             CCCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHc--CCCCHHHHHHHHHHHHHHH
Confidence            4568999999999999999992    345666654  7899999999988885543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	415
d1irza_	64	a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis th	6e-18

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 75.3 bits (185), Expect = 6e-18
 Identities = 28/57 (49%), Positives = 39/57 (68%), Gaps = 1/57 (1%)

Query: 244 SMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYR 300
           + + PR+ WT  LH +F+ AV+ LG  ERA PK +L+LM+V  LT  +V SHLQ +R
Sbjct: 2   AQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFR 57

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	415
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	99.91
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	87.9
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	86.19

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.91  E-value=8e-26  Score=174.05  Aligned_cols=61  Identities=46%  Similarity=0.770  Sum_probs=57.1

Q ss_pred             CCCCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHhhcCCCCccHHHHHHhhccccccccc
Q 014944          244 SMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTT  305 (415)
Q Consensus       244 s~kKpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~ILelM~V~gLTr~hVkSHLQKYRl~k~t  305 (415)
                      +.||+|++||+|||++||+||++||+ ++|+||+|+++|+|++||++||+|||||||+..+.
T Consensus         2 ~~kk~R~~WT~elH~~Fv~Av~~lG~-~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl~l~k   62 (64)
T d1irza_           2 AQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK   62 (64)
T ss_dssp             CCCCSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCc-cccchHHHHHHcCCCCCCHHHHHHHHHHHHHHHHh
Confidence            46899999999999999999999985 89999999999999999999999999999997653

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.90  E-value=0.27  Score=34.74  Aligned_cols=48  Identities=21%  Similarity=0.303  Sum_probs=39.1

Q ss_pred             CcccCHHHHHHHHHHHHHhCCCCCCChhHHHhhcCCCCccHHHHHHhhcccccc
Q 014944          249 RMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTV  302 (415)
Q Consensus       249 RlrWT~ELH~rFV~AV~qLGG~dkAtPK~ILelM~V~gLTr~hVkSHLQKYRl~  302 (415)
                      .++||.|=...|++||...|.    -=..|-+.|  ++=|..+|++|-++|-..
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~--~~Rt~~q~k~ry~~~~~~   49 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGR----RWTKISKLI--GSRTVLQVKSYARQYFKN   49 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhcc----hHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence            468999999999999999994    234666665  478999999999987654

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.19  E-value=0.52  Score=32.09  Aligned_cols=44  Identities=23%  Similarity=0.262  Sum_probs=35.2

Q ss_pred             ccCHHHHHHHHHHHHHhCCCCCCChhHHHhhcCCCCccHHHHHHhhccc
Q 014944          251 RWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMY  299 (415)
Q Consensus       251 rWT~ELH~rFV~AV~qLGG~dkAtPK~ILelM~V~gLTr~hVkSHLQKY  299 (415)
                      .||.|=..++++||.+.| .  .-=+.|-+.|+  +=|..+|+.|-++|
T Consensus         3 ~Wt~eEd~~L~~~v~~~G-~--~nW~~Ia~~~~--~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCG-F--GNWQDVANQMC--TKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTC-T--TCHHHHHHHHT--TSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHC-C--ccHHHHHHHcC--CCCHHHHHHHHHHh
Confidence            399999999999999998 1  23456667775  55899999998776