Citrus Sinensis ID: 014947

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-----
MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFCELLEPRDLDFEALKHEVMDFAESSKGALSKMTDEYFVSQAMAGYSRAPFSDLVFIPLALYLKASKIFECVRGGGERRFASKQGSKIDYESLAYGSPQEVRHTFARIVFDTVYPLDLTE
ccccccccEEEEccccHHHHHHHHcccHHccccccEEEEEEccEEEEEccccccccccccccccccccccccccccHHHHccccccccHHHHHcccccccEEEEccccHHHHHcccEEccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHcHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHcHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccccccEEEEEHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccc
ccccccccccEEccccHHHHHHHHHHccEEEcEEEEEEEEEcccEEEEEEEEcccccccccccccccccEEcccccccHHHHHHHcccEEEEEEEcccccEEHHccccHHHHHHccEEEEccccccccccHHHHHHHHHHHHHccccccHcHHcHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccHcccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccccccEEEEcHHHHHHHHHHHHHHHccccccccccccccEcHHHHccccHHHHHHHHHHHHHHccccccccc
mlnripkdfdiITSAELKEVVRVFSQCeivgkrfpichvhfENTIVEVssfstsgrrfsrdfkyeferpigcdekdfIRWRNClqrdftinglmfdpYAKIIYDYIGGIEDIRKAKVqtvipastsfqEDCARILRAIRIAARLGFRFSRETAHFvkhlspsilklDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLdkllapdrpchsSLWIAILAFHKalsdqprdpLVVAVFSLAVYNGGDMLEAVKIARRINKShdesfcelleprdldFEALKHEVMDFAEsskgalskmtDEYFVSQamagysrapfsdlvFIPLALYLKASKIFECvrgggerrfaskqgskidyeslaygspqevrHTFARIVfdtvypldlte
mlnripkdfdiitsaeLKEVVRVFSQCEIVGKRFPICHVHFEntivevssfstsgrrfsRDFKYeferpigcdekdfiRWRNCLQRDftinglmfdPYAKIIYDYIGGIEDIRKAKVQTVipastsfqedcARILRAIRIAARLGFRFSretahfvkhlspsilklDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFCELLEPRDLDFEALKHEVMDFaesskgalsKMTDEYFVSQAMAGYSRAPFSDLVFIPLALYLKASKIFECVRgggerrfaskqgskiDYESLAYGSPQEVRHTFARIVFDTVYPLDLTE
MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVssfstsgrrfsrdfKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKiiydyiggiediRKAKVQTVIPASTSFQEDCarilrairiaarlGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRsnlllslfsnldkllAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFCELLEPRDLDFEALKHEVMDFAESSKGALSKMTDEYFVSQAMAGYSRAPFSDLVFIPLALYLKASKIFECVRGGGERRFASKQGSKIDYESLAYGSPQEVRHTFARIVFDTVYPLDLTE
*******DFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFCELLEPRDLDFEALKHEVMDFA********KMTDEYFVSQAMAGYSRAPFSDLVFIPLALYLKASKIFECVRGGGERRFA*****KIDYESLAYGSPQEVRHTFARIVFDTVYPLD***
MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFST*****************GCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFCELL*************VMDFAESSKGALSKMTDEYFVSQAMAGYSRAPFSDLVFIPLALYLKASKIFECVRGGG***********IDYESLAYGSPQEVRHTFARIVFDTVYPLD***
MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFCELLEPRDLDFEALKHEVMDFAESSKGALSKMTDEYFVSQAMAGYSRAPFSDLVFIPLALYLKASKIFECVRGGGERRFASKQGSKIDYESLAYGSPQEVRHTFARIVFDTVYPLDLTE
*LNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSG***********ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFCELLEPRDLDFEALKHEVMDFAESSKGALSKMTDEYFVSQAMAGYSRAPFSDLVFIPLALYLKASKIFECVRGGGERRFASKQGSKIDYESLAYGSPQEVRHTFARIVFDTVYPLDL**
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MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFCELLEPRDLDFEALKHEVMDFAESSKGALSKMTDEYFVSQAMAGYSRAPFSDLVFIPLALYLKASKIFECVRGGGERRFASKQGSKIDYESLAYGSPQEVRHTFARIVFDTVYPLDLTE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query415 2.2.26 [Sep-21-2011]
P44439452 Probable poly(A) polymera yes no 0.506 0.464 0.314 4e-26
P0ABF1465 Poly(A) polymerase OS=Esc N/A no 0.496 0.443 0.321 2e-25
P0ABF2465 Poly(A) polymerase OS=Esc yes no 0.496 0.443 0.321 2e-25
P0ABF3465 Poly(A) polymerase OS=Esc N/A no 0.496 0.443 0.321 2e-25
Q8Z9C3465 Poly(A) polymerase OS=Sal N/A no 0.496 0.443 0.316 2e-24
Q8ZRQ8465 Poly(A) polymerase OS=Sal yes no 0.496 0.443 0.312 6e-24
A4IQ63404 CCA-adding enzyme OS=Geob yes no 0.448 0.460 0.338 4e-17
Q5KXX0404 CCA-adding enzyme OS=Geob yes no 0.457 0.470 0.331 1e-16
A8FEH9400 CCA-adding enzyme OS=Baci yes no 0.448 0.465 0.339 2e-15
Q8CP70400 CCA-adding enzyme OS=Stap yes no 0.537 0.557 0.262 2e-15
>sp|P44439|PCNB_HAEIN Probable poly(A) polymerase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=pcnB PE=3 SV=1 Back     alignment and function desciption
 Score =  119 bits (298), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 114/213 (53%), Gaps = 3/213 (1%)

Query: 1   MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSF--STSGRR 57
           +L + PKDFD+ T+A  +++  +F  QC +VG+RF + H+ F   I+EV++F  + S  R
Sbjct: 61  LLGKKPKDFDVATNARPEQIQNIFQRQCRLVGRRFRLAHIMFGRDIIEVATFRANHSDAR 120

Query: 58  FSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
                K   E  +  D       ++  +RDFT+N L ++P    + DY  GI+D++  K+
Sbjct: 121 NENQAKQSNEGMLLRDNVYGTIEQDAARRDFTVNALYYNPQDNTLRDYFEGIKDLKAGKL 180

Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
           + +    T +QED  R+LR+IR  A+L     + +   ++ L+P +  +   RL  E   
Sbjct: 181 RLIGDPVTRYQEDPVRMLRSIRFMAKLDMFLEKPSEQPIRELAPLLKNIPPARLFDESLK 240

Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210
           +L  G    + RLL ++GL E L P  +AY  +
Sbjct: 241 LLQAGQGVKTYRLLRQYGLFEQLFPALSAYFTE 273
Polymerase that creates the 3' poly(A) tail found in some mRNAs.
Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 1EC: 9
>sp|P0ABF1|PCNB_ECOLI Poly(A) polymerase OS=Escherichia coli (strain K12) GN=pcnB PE=1 SV=2 Back     alignment and function description
>sp|P0ABF2|PCNB_ECOL6 Poly(A) polymerase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=pcnB PE=3 SV=2 Back     alignment and function description
>sp|P0ABF3|PCNB_ECO57 Poly(A) polymerase OS=Escherichia coli O157:H7 GN=pcnB PE=3 SV=2 Back     alignment and function description
>sp|Q8Z9C3|PCNB_SALTI Poly(A) polymerase OS=Salmonella typhi GN=pcnB PE=3 SV=2 Back     alignment and function description
>sp|Q8ZRQ8|PCNB_SALTY Poly(A) polymerase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=pcnB PE=3 SV=2 Back     alignment and function description
>sp|A4IQ63|CCA_GEOTN CCA-adding enzyme OS=Geobacillus thermodenitrificans (strain NG80-2) GN=cca PE=3 SV=1 Back     alignment and function description
>sp|Q5KXX0|CCA_GEOKA CCA-adding enzyme OS=Geobacillus kaustophilus (strain HTA426) GN=cca PE=3 SV=1 Back     alignment and function description
>sp|A8FEH9|CCA_BACP2 CCA-adding enzyme OS=Bacillus pumilus (strain SAFR-032) GN=cca PE=3 SV=1 Back     alignment and function description
>sp|Q8CP70|CCA_STAES CCA-adding enzyme OS=Staphylococcus epidermidis (strain ATCC 12228) GN=cca PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query415
255540089 524 poly(A) polymerase, putative [Ricinus co 0.997 0.790 0.748 0.0
225425222 537 PREDICTED: CCA-adding enzyme [Vitis vini 0.997 0.770 0.737 0.0
224119782515 predicted protein [Populus trichocarpa] 0.992 0.8 0.730 1e-179
224134120481 predicted protein [Populus trichocarpa] 0.997 0.860 0.719 1e-177
356507386 540 PREDICTED: uncharacterized protein LOC10 0.990 0.761 0.700 1e-173
297808367 533 polynucleotide adenylyltransferase famil 1.0 0.778 0.685 1e-168
22327016 527 Polynucleotide adenylyltransferase famil 1.0 0.787 0.684 1e-168
357520559 543 Poly(A) polymerase [Medicago truncatula] 1.0 0.764 0.677 1e-167
18377862 527 AT5g23690/MQM1_4 [Arabidopsis thaliana] 1.0 0.787 0.681 1e-167
356511530 538 PREDICTED: CCA-adding enzyme-like [Glyci 0.990 0.763 0.694 1e-166
>gi|255540089|ref|XP_002511109.1| poly(A) polymerase, putative [Ricinus communis] gi|223550224|gb|EEF51711.1| poly(A) polymerase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  652 bits (1683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/414 (74%), Positives = 358/414 (86%)

Query: 1   MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
           +L RIPKDFDIITSAEL+EV R FS+CEIVG+RFPICHV+  +T+VEVSSFST+G++F  
Sbjct: 111 ILKRIPKDFDIITSAELREVARAFSRCEIVGRRFPICHVYVGDTVVEVSSFSTTGQKFGG 170

Query: 61  DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
           D+ Y+ + PI CDEKD++RWRNC QRDFTINGLMFDPY KI+YDYIGG+EDIRKAKV+TV
Sbjct: 171 DWNYDTQSPIDCDEKDYMRWRNCSQRDFTINGLMFDPYEKIVYDYIGGLEDIRKAKVRTV 230

Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
            PAS SFQEDCARILRA+RIAARLGFRFSRETAHF+KH + SIL+LD+GRLLMEMNYMLA
Sbjct: 231 TPASNSFQEDCARILRAVRIAARLGFRFSRETAHFLKHFAHSILRLDKGRLLMEMNYMLA 290

Query: 181 YGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPC 240
           YGS+EASLRLLWKFGLLE+LLPIQAAY V  GF+RRDKRSN+LLSL SN+DKLLAPDRPC
Sbjct: 291 YGSSEASLRLLWKFGLLEILLPIQAAYFVHCGFKRRDKRSNMLLSLLSNMDKLLAPDRPC 350

Query: 241 HSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFCELL 300
           HS LWI ILAFHKALS+QPRDPLVVA F LAV+NGGDM EAV IA+RI+K HD SF EL 
Sbjct: 351 HSCLWIGILAFHKALSEQPRDPLVVAAFCLAVHNGGDMSEAVNIAKRIDKPHDMSFHELC 410

Query: 301 EPRDLDFEALKHEVMDFAESSKGALSKMTDEYFVSQAMAGYSRAPFSDLVFIPLALYLKA 360
           +P D+D + L  EVMD A+S K  LS MTDE++VSQAMA Y +AP+SDLVFI  ALYL+ 
Sbjct: 411 KPGDMDTDQLVDEVMDLAQSIKRVLSMMTDEHYVSQAMAEYPQAPYSDLVFISFALYLRV 470

Query: 361 SKIFECVRGGGERRFASKQGSKIDYESLAYGSPQEVRHTFARIVFDTVYPLDLT 414
            ++FECVR G E+ F  KQG KI+Y+ LA GS +EVRHTFARIVFDTVYPL+LT
Sbjct: 471 GRVFECVRQGKEKGFVPKQGGKINYQLLALGSLKEVRHTFARIVFDTVYPLNLT 524

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225425222|ref|XP_002266814.1| PREDICTED: CCA-adding enzyme [Vitis vinifera] gi|296088167|emb|CBI35659.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224119782|ref|XP_002318161.1| predicted protein [Populus trichocarpa] gi|222858834|gb|EEE96381.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224134120|ref|XP_002321741.1| predicted protein [Populus trichocarpa] gi|222868737|gb|EEF05868.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356507386|ref|XP_003522448.1| PREDICTED: uncharacterized protein LOC100796540 [Glycine max] Back     alignment and taxonomy information
>gi|297808367|ref|XP_002872067.1| polynucleotide adenylyltransferase family protein [Arabidopsis lyrata subsp. lyrata] gi|297317904|gb|EFH48326.1| polynucleotide adenylyltransferase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|22327016|ref|NP_197758.2| Polynucleotide adenylyltransferase family protein [Arabidopsis thaliana] gi|332005816|gb|AED93199.1| Polynucleotide adenylyltransferase family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357520559|ref|XP_003630568.1| Poly(A) polymerase [Medicago truncatula] gi|355524590|gb|AET05044.1| Poly(A) polymerase [Medicago truncatula] Back     alignment and taxonomy information
>gi|18377862|gb|AAL67117.1| AT5g23690/MQM1_4 [Arabidopsis thaliana] gi|22137254|gb|AAM91472.1| AT5g23690/MQM1_4 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356511530|ref|XP_003524478.1| PREDICTED: CCA-adding enzyme-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query415
TAIR|locus:2171641527 AT5G23690 [Arabidopsis thalian 1.0 0.787 0.586 5.3e-127
TAIR|locus:2099473 881 AT3G48830 [Arabidopsis thalian 0.930 0.438 0.572 2.5e-113
TAIR|locus:2010439541 AT1G28090 [Arabidopsis thalian 0.987 0.757 0.492 3.1e-99
TAIR|locus:2053913 757 AT2G17580 [Arabidopsis thalian 0.816 0.447 0.347 2.7e-56
TIGR_CMR|GSU_3250459 GSU_3250 "polyA polymerase" [G 0.115 0.104 0.458 5.5e-12
UNIPROTKB|Q4K5Y6463 pcnB "Poly(A) polymerase" [Pse 0.501 0.449 0.248 1.7e-11
UNIPROTKB|P0ABF1465 pcnB [Escherichia coli K-12 (t 0.510 0.455 0.246 3e-10
TIGR_CMR|SO_0872478 SO_0872 "polyA polymerase" [Sh 0.503 0.437 0.227 5.5e-09
UNIPROTKB|Q9KUC8457 VC_0594 "PolyA polymerase" [Vi 0.498 0.452 0.223 1.1e-08
TIGR_CMR|VC_0594457 VC_0594 "polyA polymerase" [Vi 0.498 0.452 0.223 1.1e-08
TAIR|locus:2171641 AT5G23690 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1247 (444.0 bits), Expect = 5.3e-127, P = 5.3e-127
 Identities = 245/418 (58%), Positives = 302/418 (72%)

Query:     1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVXXXXXXXXXXXX 60
             +L R PKDFDI+TSAEL+EVVR F +CEIVG+RFPICHVH  + ++EV            
Sbjct:   108 ILKRTPKDFDILTSAELREVVRTFPRCEIVGRRFPICHVHIGDDLIEVSSFSTSAQNSSR 167

Query:    61 XXKYEFERPIGCD-EKDFIRWRNCLQRDFTINGLMFDPYAKXXXXXXXXXXXXRKAKVQT 119
               + E +   G D ++D IR  NCLQRDFTINGLMFDPYAK            RKAKV+T
Sbjct:   168 NTRTECKESSGSDGDEDCIRLNNCLQRDFTINGLMFDPYAKVVYDYLGGMEDIRKAKVRT 227

Query:   120 VIPASTSFQEDCXXXXXXXXXXXXXGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYML 179
             VI A TSF +DC             GFR S+ETAHF+K+LS  + +LD+GR+LMEMNYML
Sbjct:   228 VIHAGTSFHQDCARILRAIRIAARLGFRMSKETAHFIKNLSLLVQRLDKGRILMEMNYML 287

Query:   180 AYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRXXXXXXXXXXXXXXXAPDRP 239
             AYGSAEASLRLLWKFG+LE+LLPIQAAYL + GFRRRDKR               APDRP
Sbjct:   288 AYGSAEASLRLLWKFGILEILLPIQAAYLARSGFRRRDKRTNMLLSLFANLDKLLAPDRP 347

Query:   240 CHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFCEL 299
             CHSSLWIAILAFHKAL+D+PR P+VVA FSLAV+N GD+LEAV+I ++I + HD+SF EL
Sbjct:   348 CHSSLWIAILAFHKALADKPRSPIVVAAFSLAVHNCGDILEAVEITKKITRPHDKSFFEL 407

Query:   300 LEPRD-LDFEALKHEVMDFAESSKGALSKMTDEYFVSQAMAGYSRAPFSDLVFIPLALYL 358
             +EP + LDF+ L  EVMD   S + AL++MTD YF+S+AM+ Y +AP+SDLVFIPL LYL
Sbjct:   408 VEPEENLDFQTLLDEVMDLDASIEDALNQMTDAYFISKAMSAYPQAPYSDLVFIPLQLYL 467

Query:   359 KASKIFECVRGGGER-RFASKQGSKIDYESLAYGSPQEVRHTFARIVFDTVYPLDLTE 415
             +A +IF+CV+    R  F +KQGSKI+Y SL  G   E+RH FAR+VFDTV+PL+L++
Sbjct:   468 RAGRIFDCVKNEETRIGFEAKQGSKIEYGSLNSGYFPEIRHVFARVVFDTVFPLNLSQ 525
GO:0003723 "RNA binding" evidence=IEA;ISS
GO:0006396 "RNA processing" evidence=IEA;ISS
GO:0016779 "nucleotidyltransferase activity" evidence=IEA
TAIR|locus:2099473 AT3G48830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010439 AT1G28090 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2053913 AT2G17580 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_3250 GSU_3250 "polyA polymerase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|Q4K5Y6 pcnB "Poly(A) polymerase" [Pseudomonas protegens Pf-5 (taxid:220664)] Back     alignment and assigned GO terms
UNIPROTKB|P0ABF1 pcnB [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|SO_0872 SO_0872 "polyA polymerase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KUC8 VC_0594 "PolyA polymerase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_0594 VC_0594 "polyA polymerase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.7.7.21LOW CONFIDENCE prediction!
3rd Layer2.7.70.691
4th Layer2.7.7.25LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00006174001
SubName- Full=Chromosome chr1 scaffold_166, whole genome shotgun sequence; (455 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00026904001
SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (363 aa)
•     • 0.443
GSVIVG00001276001
SubName- Full=Chromosome undetermined scaffold_114, whole genome shotgun sequence; (290 aa)
•       0.407

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query415
COG0617412 COG0617, PcnB, tRNA nucleotidyltransferase/poly(A) 2e-43
TIGR01942410 TIGR01942, pcnB, poly(A) polymerase 3e-42
PRK11623472 PRK11623, pcnB, poly(A) polymerase I; Provisional 4e-27
PRK13299394 PRK13299, PRK13299, tRNA CCA-pyrophosphorylase; Pr 2e-20
cd05398139 cd05398, NT_ClassII-CCAase, Nucleotidyltransferase 6e-17
pfam01743126 pfam01743, PolyA_pol, Poly A polymerase head domai 9e-17
TIGR02692466 TIGR02692, tRNA_CCA_actino, tRNA adenylyltransfera 3e-15
pfam1262764 pfam12627, PolyA_pol_RNAbd, Probable RNA and SrmB- 2e-12
PRK13298417 PRK13298, PRK13298, tRNA CCA-pyrophosphorylase; Pr 2e-09
PRK10885409 PRK10885, cca, multifunctional tRNA nucleotidyl tr 7e-08
PRK13297364 PRK13297, PRK13297, tRNA CCA-pyrophosphorylase; Pr 5e-04
PRK13565 490 PRK13565, PRK13565, anthranilate synthase componen 0.003
>gnl|CDD|223690 COG0617, PcnB, tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
 Score =  156 bits (396), Expect = 2e-43
 Identities = 81/258 (31%), Positives = 118/258 (45%), Gaps = 21/258 (8%)

Query: 1   MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
           +L R PKD DI T+A  +EV ++F     VG++F    V F   I+EV         F +
Sbjct: 36  LLGRPPKDVDIATNATPEEVKKLFRNTRPVGRKFGTVTVPFNGEIIEV-------TTFRK 88

Query: 61  DFKYEFERPIGCD-----EKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKA 115
           +      RP+        E+D  R      RDFTIN L +DP    I D  GG++D+   
Sbjct: 89  EGYGYNGRPLPVVFPGTLEEDLKR------RDFTINALAYDPEDGEIIDPFGGLKDLENR 142

Query: 116 KVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEM 175
            ++ +  AS  F+ED  RILRA R AARLGF    ET   ++ ++P + K+ R RL  E+
Sbjct: 143 VLRHIGDASERFREDPLRILRAARFAARLGFTIEPETEEAIRLMAPLLAKISRERLWDEL 202

Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
             +L   +   +L+LL ++G L++L P               +   LLL     L   LA
Sbjct: 203 KKLLLSPNPREALQLLREYGALKILFPELDKLFGVPKLLLALREIELLLHNTDELLLALA 262

Query: 236 PDRPCHSSLWIAILAFHK 253
              P      +A      
Sbjct: 263 ALLPA---FLLAAATLPL 277

Length = 412
>gnl|CDD|130997 TIGR01942, pcnB, poly(A) polymerase Back     alignment and domain information
>gnl|CDD|236939 PRK11623, pcnB, poly(A) polymerase I; Provisional Back     alignment and domain information
>gnl|CDD|237339 PRK13299, PRK13299, tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>gnl|CDD|143388 cd05398, NT_ClassII-CCAase, Nucleotidyltransferase (NT) domain of ClassII CCA-adding enzymes Back     alignment and domain information
>gnl|CDD|216675 pfam01743, PolyA_pol, Poly A polymerase head domain Back     alignment and domain information
>gnl|CDD|131739 TIGR02692, tRNA_CCA_actino, tRNA adenylyltransferase Back     alignment and domain information
>gnl|CDD|221674 pfam12627, PolyA_pol_RNAbd, Probable RNA and SrmB- binding site of polymerase A Back     alignment and domain information
>gnl|CDD|237338 PRK13298, PRK13298, tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>gnl|CDD|182810 PRK10885, cca, multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed Back     alignment and domain information
>gnl|CDD|139469 PRK13297, PRK13297, tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>gnl|CDD|184146 PRK13565, PRK13565, anthranilate synthase component I; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 415
PRK11623472 pcnB poly(A) polymerase I; Provisional 100.0
TIGR01942410 pcnB poly(A) polymerase. This model describes the 100.0
KOG2159416 consensus tRNA nucleotidyltransferase/poly(A) poly 100.0
COG0617412 PcnB tRNA nucleotidyltransferase/poly(A) polymeras 100.0
PRK13299394 tRNA CCA-pyrophosphorylase; Provisional 100.0
TIGR02692466 tRNA_CCA_actino tRNA adenylyltransferase. The enzy 100.0
PRK13298417 tRNA CCA-pyrophosphorylase; Provisional 100.0
PRK10885409 cca multifunctional tRNA nucleotidyl transferase/2 100.0
PRK13297364 tRNA CCA-pyrophosphorylase; Provisional 100.0
PRK13296360 tRNA CCA-pyrophosphorylase; Provisional 100.0
PF01743126 PolyA_pol: Poly A polymerase head domain; InterPro 99.92
cd05398139 NT_ClassII-CCAase Nucleotidyltransferase (NT) doma 99.9
PRK03381 774 PII uridylyl-transferase; Provisional 99.44
PF1262764 PolyA_pol_RNAbd: Probable RNA and SrmB- binding si 99.42
TIGR01693 850 UTase_glnD [Protein-PII] uridylyltransferase. This 99.41
PRK00227 693 glnD PII uridylyl-transferase; Provisional 99.4
PRK00275 895 glnD PII uridylyl-transferase; Provisional 99.37
PRK03059 856 PII uridylyl-transferase; Provisional 99.32
PRK05092 931 PII uridylyl-transferase; Provisional 99.23
PHA01806200 hypothetical protein 99.2
PRK01759 854 glnD PII uridylyl-transferase; Provisional 99.1
PRK05007 884 PII uridylyl-transferase; Provisional 98.96
PRK04374 869 PII uridylyl-transferase; Provisional 98.47
COG2844 867 GlnD UTP:GlnB (protein PII) uridylyltransferase [P 96.96
>PRK11623 pcnB poly(A) polymerase I; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.9e-59  Score=484.03  Aligned_cols=281  Identities=27%  Similarity=0.494  Sum_probs=237.3

Q ss_pred             CCCCCCCcEEEEeCCCHHHHHHHhccCcccccccceEEEEeCCEEEEEeccccccccccccc-------ccccc--CcCC
Q 014947            1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDF-------KYEFE--RPIG   71 (415)
Q Consensus         1 LLg~~pkD~DIaT~a~peev~~~f~~~~~vG~~f~i~~v~~~g~~iEVstfR~~~~~~~~~~-------~~~~~--~p~g   71 (415)
                      |||++||||||+|+|+|+||+++|+++.++|++|+++||.+++..|||+|||++..+..+..       ++.+.  ...|
T Consensus        80 LLG~~pkD~DIaT~A~peev~~lf~~~r~iGrrF~~~hV~~~~~~iEVaTfR~~~~~~~~~~~~~~~~~~g~~~rdn~~g  159 (472)
T PRK11623         80 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNESDRNTSQRGQNGMLLRDNIFG  159 (472)
T ss_pred             HcCCCCCCEEEecCCCHHHHHHHhhhCeeecCCCCEEEEEECCceEEEeccccccccccccccccccCCCCceecccCCC
Confidence            69999999999999999999999999999999999999999999999999998754322111       11111  1257


Q ss_pred             CchHhhhhhhhhccCCccccceeecCCCCeEecccCcHHHHccCceeecCCcccchhhchhhHHHHHHHHHHhCCCCCHH
Q 014947           72 CDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRE  151 (415)
Q Consensus        72 ~~eeDl~r~~da~RRDFTINAla~~~~~~~i~D~~gG~~DL~~~~iR~v~~p~~~f~eDPlRiLRa~RFaa~lgf~i~~~  151 (415)
                      +++||+      .||||||||||||+.++.|+|||||++||++|+||+||+|..||+|||+|||||+|||++|||+|+++
T Consensus       160 tieeDl------~RRDFTINALayd~~~~~IiD~~gG~~DLk~riLR~IGdp~~rf~EDPlRmLRAvRFAArLgF~Ie~~  233 (472)
T PRK11623        160 SIEEDA------QRRDFTINSLYYSVADFTVRDYVGGMKDLKEGVIRLIGNPETRYREDPVRMLRAVRFAAKLDMRISPE  233 (472)
T ss_pred             CHHHHH------HhccccHHHheecCCCCeEecCCCCHHHHhCCceeecCChHhhcccchHHHHHHHHHHHHhCCCcCHH
Confidence            889999      69999999999999888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhhhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhhchhhHHHHhhcCCccCchhHHHHHHHHHHHH
Q 014947          152 TAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLD  231 (415)
Q Consensus       152 T~~~i~~~~~~l~~vs~eRi~~El~kll~~~~~~~~l~~l~~~gll~~l~P~~~~~~~~~~~~~~~~~~~~l~~~l~~ld  231 (415)
                      |.++|++++++|..+|+|||++|+.|||.++++..++++|.++|++..+||++..++....   ....+.++..++.++|
T Consensus       234 T~~aI~~~a~lL~~vs~eRI~~El~KlL~~~~~~~~~~lL~e~GLl~~lfPel~~~~~~~~---~~~~~~~~~~~l~~tD  310 (472)
T PRK11623        234 TAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENG---DSPMERIIEQVLKNTD  310 (472)
T ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHcCCCHHHHHHHHHHcCCHHHHhHhHHHHhcccc---ccHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999998764322   1124567889999999


Q ss_pred             hhhCCCCCCCcc------hHHHHHHHHHHHhcCCCChhHHHHHHHHHhcc-hhHHHHHHHhhhhhcc
Q 014947          232 KLLAPDRPCHSS------LWIAILAFHKALSDQPRDPLVVAVFSLAVYNG-GDMLEAVKIARRINKS  291 (415)
Q Consensus       232 ~~~~~~~~~~~~------~W~~~l~~~~~l~~~~~~~~~~~a~~la~~~~-~~~~~~v~~~~r~~~~  291 (415)
                      +++..+++++|.      +|+.+....+.+..+.+.+ ...++..|+... ..+.+.++||||++.+
T Consensus       311 ~ri~~~~~v~p~fl~a~llw~~~~~~~~~~~~~~~~~-~~~a~~~a~~~~l~~~~~~~~ip~r~~~~  376 (472)
T PRK11623        311 TRIHNDMRVNPAFLFAAMFWYPLLEHAQKIAQESGLA-YYDAFALAMNDVLDEACRSLAIPKRLTTL  376 (472)
T ss_pred             HHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCC-hHHHHHHHHHHHHHHHhhheeCchhhHHH
Confidence            999999999885      5666655544443333344 357888888765 5566666666666654

>TIGR01942 pcnB poly(A) polymerase Back     alignment and domain information
>KOG2159 consensus tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0617 PcnB tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK13299 tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>TIGR02692 tRNA_CCA_actino tRNA adenylyltransferase Back     alignment and domain information
>PRK13298 tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed Back     alignment and domain information
>PRK13297 tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>PRK13296 tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>PF01743 PolyA_pol: Poly A polymerase head domain; InterPro: IPR002646 This group includes nucleic acid independent RNA polymerases, such as polynucleotide adenylyltransferase (2 Back     alignment and domain information
>cd05398 NT_ClassII-CCAase Nucleotidyltransferase (NT) domain of ClassII CCA-adding enzymes Back     alignment and domain information
>PRK03381 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PF12627 PolyA_pol_RNAbd: Probable RNA and SrmB- binding site of polymerase A; PDB: 1OU5_B 3H38_A 3H3A_B 3H39_B 3H37_A 3AQN_A 3AQK_A 3AQM_B 3AQL_B 1MIY_A Back     alignment and domain information
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase Back     alignment and domain information
>PRK00227 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK00275 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK03059 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK05092 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PHA01806 hypothetical protein Back     alignment and domain information
>PRK01759 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK05007 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK04374 PII uridylyl-transferase; Provisional Back     alignment and domain information
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query415
3aqm_A415 Structure Of Bacterial Protein (Form Ii) Length = 4 3e-12
3aqk_A414 Structure Of Bacterial Protein (Apo Form I) Length 2e-11
3aql_A415 Structure Of Bacterial Protein (Apo Form Ii) Length 2e-11
1miy_A404 Crystal Structure Of Bacillus Stearothermophilus Cc 9e-04
>pdb|3AQM|A Chain A, Structure Of Bacterial Protein (Form Ii) Length = 415 Back     alignment and structure 
Iteration: 1

 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 87/215 (40%), Gaps = 3/215 (1%)
Query: 1   MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVXXXXXXXXXXXX 60
           +L + PKDFD+ T+A  ++V ++F  C +VG+RF + HV F   I+EV            
Sbjct: 46  LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 105
Query: 61  XXKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKXXXXXXXXXXXXRKAKV 117
                     G   +D I      +  +RDFTIN L +                 +   +
Sbjct: 106 DRTTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVADFTVRDYVGGMKDLKDGVI 165
Query: 118 QTVIPASTSFQEDCXXXXXXXXXXXXXGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
           + +    T ++ED              G R S ETA  +  L+  +  +   RL  E   
Sbjct: 166 RLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESLK 225
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
           +L  G    + +LL ++ L + L P    Y  ++G
Sbjct: 226 LLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENG 260
>pdb|3AQK|A Chain A, Structure Of Bacterial Protein (Apo Form I) Length = 414 Back     alignment and structure
>pdb|3AQL|A Chain A, Structure Of Bacterial Protein (Apo Form Ii) Length = 415 Back     alignment and structure
>pdb|1MIY|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Cca-adding Enzyme In Complex With Ctp Length = 404 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query415
3aql_A415 Poly(A) polymerase; transferase/RNA, ATP-binding, 5e-79
1miw_A404 TRNA CCA-adding enzyme; tRNA nucleotidyltransferas 1e-38
3h38_A441 TRNA nucleotidyl transferase-related protein; tran 2e-29
1ou5_A448 TRNA CCA-adding enzyme, tRNA-nucleotidyltransferas 3e-28
1vfg_A390 A-adding enzyme, poly A polymerase; transferase, R 1e-26
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>3aql_A Poly(A) polymerase; transferase/RNA, ATP-binding, nucleotide-binding, RNA-bindin transferase, nucleotidyltransferase, ATP binding, A-phospho; 3.00A {Escherichia coli} PDB: 3aqn_A* 3aqk_A 3aqm_A Length = 415 Back     alignment and structure
 Score =  249 bits (637), Expect = 5e-79
 Identities = 74/297 (24%), Positives = 138/297 (46%), Gaps = 12/297 (4%)

Query: 1   MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
           +L + PKDFD+ T+A  ++V ++F  C +VG+RF + HV F   I+EV++F         
Sbjct: 46  LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 105

Query: 61  DFKYEFERPIGCDEKDFIR---WRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
           D         G   +D I      +  +RDFTIN L +      + DY+GG++D++   +
Sbjct: 106 DRTTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVADFTVRDYVGGMKDLKDGVI 165

Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
           + +    T ++ED  R+LRA+R AA+LG R S ETA  +  L+  +  +    L  E   
Sbjct: 166 RLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPAHLFEESLK 225

Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPD 237
           +L  G    + +LL ++ L + L P    Y  ++G    ++   ++  +  N D  +  D
Sbjct: 226 LLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENGDSPMER---IIEQVLKNTDTRIHND 282

Query: 238 RPCHSSLWIAILAFH------KALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRI 288
              + +   A + ++      + ++ +       A          +   ++ I +R+
Sbjct: 283 MRVNPAFLFAAMFWYPLLETAQKIAQESGLTYHDAFALAMNDVLDEACRSLAIPKRL 339
>1miw_A TRNA CCA-adding enzyme; tRNA nucleotidyltransferase, translation, transferase; HET: ATP; 3.00A {Geobacillus stearothermophilus} SCOP: a.173.1.1 d.218.1.4 PDB: 1miv_A* 1miy_A* Length = 404 Back     alignment and structure
>3h38_A TRNA nucleotidyl transferase-related protein; transferase/RNA, nucleotide-binding, RNA-binding; 2.37A {Thermotoga maritima} PDB: 3h37_A 3h39_A* 3h3a_A* Length = 441 Back     alignment and structure
>1ou5_A TRNA CCA-adding enzyme, tRNA-nucleotidyltransferase; polymerase, translation; 3.40A {Homo sapiens} SCOP: a.173.1.1 d.218.1.4 Length = 448 Back     alignment and structure
>1vfg_A A-adding enzyme, poly A polymerase; transferase, RNA, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: APC; 2.80A {Aquifex aeolicus} SCOP: a.173.1.1 d.218.1.4 Length = 390 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query415
3aql_A415 Poly(A) polymerase; transferase/RNA, ATP-binding, 100.0
1miw_A404 TRNA CCA-adding enzyme; tRNA nucleotidyltransferas 100.0
3h38_A441 TRNA nucleotidyl transferase-related protein; tran 100.0
1ou5_A448 TRNA CCA-adding enzyme, tRNA-nucleotidyltransferas 100.0
1vfg_A390 A-adding enzyme, poly A polymerase; transferase, R 100.0
>3aql_A Poly(A) polymerase; transferase/RNA, ATP-binding, nucleotide-binding, RNA-bindin transferase, nucleotidyltransferase, ATP binding, A-phospho; 3.00A {Escherichia coli} PDB: 3aqn_A* 3aqk_A 3aqm_A Back     alignment and structure
Probab=100.00  E-value=1.9e-51  Score=422.39  Aligned_cols=306  Identities=27%  Similarity=0.427  Sum_probs=231.7

Q ss_pred             CCCCCCCcEEEEeCCCHHHHHHHhccCcccccccceEEEEeCCEEEEEeccccccccc--ccc---cccccc----CcCC
Q 014947            1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRF--SRD---FKYEFE----RPIG   71 (415)
Q Consensus         1 LLg~~pkD~DIaT~a~peev~~~f~~~~~vG~~f~i~~v~~~g~~iEVstfR~~~~~~--~~~---~~~~~~----~p~g   71 (415)
                      |||++|+|+||+|+|+|++++++|+++..+|++|++++|.+++..+||+|||++.+..  ...   +..+.+    ...+
T Consensus        46 LLg~~~~D~Di~t~a~p~~~~~~f~~~~~~g~~f~~~~v~~~~~~~ev~t~R~~~~~~~~~~~~~~~~~~g~~~~~~~~~  125 (415)
T 3aql_A           46 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFG  125 (415)
T ss_dssp             HHSSCCSCCEEEESSCHHHHHHHTTTSCCCCCSSSCCEEESSSCEEEEEECCC-----------------------CCCC
T ss_pred             HcCCCCCCEEEEcCCCHHHHHHHhhhCeEecccCCEEEEEECCcEEEEeeecccccccccccccccccCCCcccccccCC
Confidence            5899999999999999999999999998999999999999999999999999875421  000   000111    1357


Q ss_pred             CchHhhhhhhhhccCCccccceeecCCCCeEecccCcHHHHccCceeecCCcccchhhchhhHHHHHHHHHHhCCCCCHH
Q 014947           72 CDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRE  151 (415)
Q Consensus        72 ~~eeDl~r~~da~RRDFTINAla~~~~~~~i~D~~gG~~DL~~~~iR~v~~p~~~f~eDPlRiLRa~RFaa~lgf~i~~~  151 (415)
                      ++++|+      .||||||||||||+.++.|+|||||++||++|+||++++|..+|.|||+|||||+|||+++||.|+++
T Consensus       126 tl~eDl------~RRDFTINAla~~~~~~~l~D~~gG~~DL~~~~Ir~v~~p~~~F~eDPlRiLRa~Rfaarlgf~i~~~  199 (415)
T 3aql_A          126 SIEEDA------QRRDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPE  199 (415)
T ss_dssp             CHHHHH------TTSSBSGGGCEEETTTCCEECSSSHHHHHHHTEECBSSCHHHHHHHCTHHHHHHHHHHHHTTCEECHH
T ss_pred             CHHHHH------hcCCccceeEEEeCCCCeeeCCCCCHHHHhCCeEEecCChhhhhhhCHHHHHHHHHHHHHhCCCCCHH
Confidence            889999      69999999999999888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhhhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhhchhhHHHHhhcCCccCchhHHHHHHHHHHHH
Q 014947          152 TAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLD  231 (415)
Q Consensus       152 T~~~i~~~~~~l~~vs~eRi~~El~kll~~~~~~~~l~~l~~~gll~~l~P~~~~~~~~~~~~~~~~~~~~l~~~l~~ld  231 (415)
                      |.++|++++.+|..+|.||++.|+.|||.++++..++++|.++|+|..+||++..+..+.+..|   ..++..|++.++|
T Consensus       200 T~~ai~~~~~~l~~is~eRi~~E~~kiL~~~~~~~~l~~l~~~GlL~~~lPe~~~i~~~~q~~h---~~~v~~h~L~~~d  276 (415)
T 3aql_A          200 TAEPIPRLATLLNDIPPAHLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENGDSP---MERIIEQVLKNTD  276 (415)
T ss_dssp             HHTHHHHHGGGGGGSCHHHHHHHHHHHHTSSCHHHHHHHHHHTTCSTTTCHHHHTTCCSSSCCH---HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhcCChHHHHHHHHHHHcCCCHHHHHHHHHHcCChHHhchhHHHHhccCCcch---HHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999987754433222   2456778888999


Q ss_pred             hhhCCCCCCCcchHHHHHHHHHHHh-------cCCCChh----------HHHHHHHHHh----cchhHHHHHHHhhhhhc
Q 014947          232 KLLAPDRPCHSSLWIAILAFHKALS-------DQPRDPL----------VVAVFSLAVY----NGGDMLEAVKIARRINK  290 (415)
Q Consensus       232 ~~~~~~~~~~~~~W~~~l~~~~~l~-------~~~~~~~----------~~~a~~la~~----~~~~~~~~v~~~~r~~~  290 (415)
                      +.+..+.+..+.+.++.| +|..+.       ...+.+.          ....++..+.    ......+.|....|+.+
T Consensus       277 ~~i~~~~~~~~~L~lAAL-LH~di~K~~~~~~~~~G~~~~~~h~~~ga~~a~~~~~rl~l~~r~~~~v~~lv~lq~rL~~  355 (415)
T 3aql_A          277 TRIHNDMRVNPAFLFAAM-FWYPLLETAQKIAQESGLTYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSR  355 (415)
T ss_dssp             HHHHTTCCCCHHHHHHHH-THHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHhcCCCCCHHHHHhHh-cCcchhhhhhhhhhccCCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhh
Confidence            887766665544333333 231111       1101110          0011111111    11335566778888888


Q ss_pred             cccchhhhhcCCCCCc----HHHHHHHHHH
Q 014947          291 SHDESFCELLEPRDLD----FEALKHEVMD  316 (415)
Q Consensus       291 ~~~~~~~~l~~~~~~~----~~~~~~~~~~  316 (415)
                      ..+....++++...+-    ...++.++.+
T Consensus       356 ~~~~~~~~l~~~~~f~~~~d~l~~r~~~~~  385 (415)
T 3aql_A          356 RQGKRAWKLLEHPKFRAAYDLLALRAEVER  385 (415)
T ss_dssp             CCCTTHHHHHHCTTHHHHHHHHHHHHHHTT
T ss_pred             ccCcCHHHHHhChHHHHHHHHHHHHHhhCC
Confidence            8777788787766332    2345555543
>1miw_A TRNA CCA-adding enzyme; tRNA nucleotidyltransferase, translation, transferase; HET: ATP; 3.00A {Geobacillus stearothermophilus} SCOP: a.173.1.1 d.218.1.4 PDB: 1miv_A* 1miy_A* Back     alignment and structure
>3h38_A TRNA nucleotidyl transferase-related protein; transferase/RNA, nucleotide-binding, RNA-binding; 2.37A {Thermotoga maritima} PDB: 3h37_A 3h39_A* 3h3a_A* Back     alignment and structure
>1ou5_A TRNA CCA-adding enzyme, tRNA-nucleotidyltransferase; polymerase, translation; 3.40A {Homo sapiens} SCOP: a.173.1.1 d.218.1.4 Back     alignment and structure
>1vfg_A A-adding enzyme, poly A polymerase; transferase, RNA, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: APC; 2.80A {Aquifex aeolicus} SCOP: a.173.1.1 d.218.1.4 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 415
d1miwa1265 a.173.1.1 (A:140-404) tRNA CCA-adding enzyme, C-te 4e-14
d1miwa2139 d.218.1.4 (A:1-139) tRNA CCA-adding enzyme, head d 3e-12
d1ou5a1204 a.173.1.1 (A:151-354) tRNA CCA-adding enzyme, C-te 3e-11
d1vfga1215 a.173.1.1 (A:137-351) Poly A polymerase PcnB {Aqui 5e-10
d1vfga2136 d.218.1.4 (A:1-136) Poly A polymerase PcnB {Aquife 5e-09
d1ou5a2152 d.218.1.4 (A:-1-150) tRNA CCA-adding enzyme, head 1e-08
>d1miwa1 a.173.1.1 (A:140-404) tRNA CCA-adding enzyme, C-terminal domains {Bacillus stearothermophilus [TaxId: 1422]} Length = 265 Back     information, alignment and structure

class: All alpha proteins
fold: Poly A polymerase C-terminal region-like
superfamily: Poly A polymerase C-terminal region-like
family: Poly A polymerase C-terminal region-like
domain: tRNA CCA-adding enzyme, C-terminal domains
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 69.9 bits (170), Expect = 4e-14
 Identities = 34/142 (23%), Positives = 57/142 (40%), Gaps = 2/142 (1%)

Query: 117 VQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMN 176
           ++TV  A   F+ED  R++RA+R  + LGF  + +T   +   +P +  +   R+ MEM 
Sbjct: 2   IRTVGEAEKRFREDALRMMRAVRFVSELGFALAPDTEQAIVQNAPLLAHISVERMTMEME 61

Query: 177 YMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAP 236
            +L    A  +L LL + GL   L  +  A   K        R   L +       L   
Sbjct: 62  KLLGGPFAARALPLLAETGLNAYLPGL--AGKEKQLRLAAAYRWPWLAAREERWALLCHA 119

Query: 237 DRPCHSSLWIAILAFHKALSDQ 258
                S  ++        + D+
Sbjct: 120 LGVQESRPFLRAWKLPNKVVDE 141
>d1miwa2 d.218.1.4 (A:1-139) tRNA CCA-adding enzyme, head domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 139 Back     information, alignment and structure
>d1ou5a1 a.173.1.1 (A:151-354) tRNA CCA-adding enzyme, C-terminal domains {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 204 Back     information, alignment and structure
>d1vfga1 a.173.1.1 (A:137-351) Poly A polymerase PcnB {Aquifex aeolicus [TaxId: 63363]} Length = 215 Back     information, alignment and structure
>d1vfga2 d.218.1.4 (A:1-136) Poly A polymerase PcnB {Aquifex aeolicus [TaxId: 63363]} Length = 136 Back     information, alignment and structure
>d1ou5a2 d.218.1.4 (A:-1-150) tRNA CCA-adding enzyme, head domain {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 152 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query415
d1vfga2136 Poly A polymerase PcnB {Aquifex aeolicus [TaxId: 6 99.9
d1miwa2139 tRNA CCA-adding enzyme, head domain {Bacillus stea 99.89
d1miwa1265 tRNA CCA-adding enzyme, C-terminal domains {Bacill 99.89
d1ou5a2152 tRNA CCA-adding enzyme, head domain {Human (Homo s 99.88
d1ou5a1204 tRNA CCA-adding enzyme, C-terminal domains {Human 99.85
d1vfga1215 Poly A polymerase PcnB {Aquifex aeolicus [TaxId: 6 99.84
>d1vfga2 d.218.1.4 (A:1-136) Poly A polymerase PcnB {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Nucleotidyltransferase
superfamily: Nucleotidyltransferase
family: Poly A polymerase head domain-like
domain: Poly A polymerase PcnB
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.90  E-value=1.2e-24  Score=189.48  Aligned_cols=106  Identities=18%  Similarity=0.300  Sum_probs=82.9

Q ss_pred             CCCCCCCcEEEEeCCCHHHHHHHhcc----CcccccccceEEEEeCCEEEEEeccccccccccccccccccCcCCCchHh
Q 014947            1 MLNRIPKDFDIITSAELKEVVRVFSQ----CEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYEFERPIGCDEKD   76 (415)
Q Consensus         1 LLg~~pkD~DIaT~a~peev~~~f~~----~~~vG~~f~i~~v~~~g~~iEVstfR~~~~~~~~~~~~~~~~p~g~~eeD   76 (415)
                      |||++|+|+||+|++.|.++.+.|.+    ...+++.|+++++..++..+||+++|++.....+....   ...+++++|
T Consensus        24 llg~~~~DiDi~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~~R~e~~~~~~~~~~---~~~~~i~eD  100 (136)
T d1vfga2          24 LLGKEVWDVDFVVEGNAIELAKELARRHGVNVHPFPEFGTAHLKIGKLKLEFATARRETYPRPGAYPK---VEPASLKED  100 (136)
T ss_dssp             HTTCCCSEEEEEESSCHHHHHHHHHHHHTCCCEEETTTTEEEEEETTEEEEEEECCSCC------------CCCCCHHHH
T ss_pred             HcCCCCCCccEEEeeeecchhhhhhhccccccccccccccceeeeccchheehhceeccccccccCce---eeeehhhhh
Confidence            68999999999999999988776643    22457899999999999999999999886554322211   124567999


Q ss_pred             hhhhhhhccCCccccceeecCCC---CeEecccCcHHHHccC
Q 014947           77 FIRWRNCLQRDFTINGLMFDPYA---KIIYDYIGGIEDIRKA  115 (415)
Q Consensus        77 l~r~~da~RRDFTINAla~~~~~---~~i~D~~gG~~DL~~~  115 (415)
                      |      .|||||||||||++..   +.|+|||||++||++|
T Consensus       101 l------~RRDFTiNAma~~~~~~~~g~liDp~gG~~DL~~k  136 (136)
T d1vfga2         101 L------IRRDFTINAMAISVNLEDYGTLIDYFGGLRDLKDK  136 (136)
T ss_dssp             H------HTSSBGGGSCEEECCGGGTTCEECSSCHHHHHHTT
T ss_pred             h------hhcccchhheeeccCcCCCCEEEeCCCCHHHHhcC
Confidence            8      6999999999999863   4689999999999986
>d1miwa2 d.218.1.4 (A:1-139) tRNA CCA-adding enzyme, head domain {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1miwa1 a.173.1.1 (A:140-404) tRNA CCA-adding enzyme, C-terminal domains {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1ou5a1 a.173.1.1 (A:151-354) tRNA CCA-adding enzyme, C-terminal domains {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Back     information, alignment and structure
>d1vfga1 a.173.1.1 (A:137-351) Poly A polymerase PcnB {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure