Citrus Sinensis ID: 014953
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 415 | 2.2.26 [Sep-21-2011] | |||||||
| P55229 | 522 | Glucose-1-phosphate adeny | yes | no | 0.932 | 0.741 | 0.847 | 0.0 | |
| P55243 | 483 | Glucose-1-phosphate adeny | N/A | no | 0.934 | 0.803 | 0.840 | 0.0 | |
| P55230 | 518 | Glucose-1-phosphate adeny | no | no | 0.934 | 0.749 | 0.695 | 1e-170 | |
| P55233 | 522 | Glucose-1-phosphate adeny | N/A | no | 0.932 | 0.741 | 0.687 | 1e-168 | |
| Q00081 | 470 | Glucose-1-phosphate adeny | N/A | no | 0.934 | 0.825 | 0.670 | 1e-162 | |
| P55242 | 519 | Glucose-1-phosphate adeny | N/A | no | 0.922 | 0.737 | 0.667 | 1e-159 | |
| P55231 | 521 | Glucose-1-phosphate adeny | no | no | 0.930 | 0.740 | 0.638 | 1e-154 | |
| Q9SIK1 | 523 | Probable glucose-1-phosph | no | no | 0.930 | 0.738 | 0.633 | 1e-149 | |
| P12299 | 522 | Glucose-1-phosphate adeny | N/A | no | 0.920 | 0.731 | 0.605 | 1e-141 | |
| P30524 | 523 | Glucose-1-phosphate adeny | N/A | no | 0.920 | 0.730 | 0.602 | 1e-141 |
| >sp|P55229|GLGL1_ARATH Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic OS=Arabidopsis thaliana GN=ADG2 PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/388 (84%), Positives = 366/388 (94%), Gaps = 1/388 (0%)
Query: 2 EKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYIL 61
EKRD RTVA++ILGGGAGTRL+PLTK+RAKPAVPIGGAYRLIDVPMSNCINSGINKVYIL
Sbjct: 83 EKRDPRTVASIILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKVYIL 142
Query: 62 TQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLF 121
TQYNSASLNRHLARAYN +G+ FGDG VEVLAATQTPGE+GKRWFQGTADAVRQFHWLF
Sbjct: 143 TQYNSASLNRHLARAYN-SNGLGFGDGYVEVLAATQTPGESGKRWFQGTADAVRQFHWLF 201
Query: 122 EDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINN 181
ED R+K IEDVLILSGDHLYRMDYMDF+Q+HRQSGADI+ISC+P+DD RASDFGLMKI++
Sbjct: 202 EDARSKDIEDVLILSGDHLYRMDYMDFIQDHRQSGADISISCIPIDDRRASDFGLMKIDD 261
Query: 182 EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF 241
+GRV+SFSEKPKG DLKAMAVDTT+LGLSK+EAE+KPYIASMGVY+FKKEILLNLLRWRF
Sbjct: 262 KGRVISFSEKPKGDDLKAMAVDTTILGLSKEEAEKKPYIASMGVYVFKKEILLNLLRWRF 321
Query: 242 PTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKP 301
PTANDFGSEIIP SA E ++ AYLFNDYWEDIGTIRSFFEANLALT HP FSFYDA KP
Sbjct: 322 PTANDFGSEIIPFSAKEFYVNAYLFNDYWEDIGTIRSFFEANLALTEHPGAFSFYDAAKP 381
Query: 302 IYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGAD 361
IYTSRRNLPPSKID+SK++DSIISHGSF+T+ IEHS+VGIRSR+ +NV LKDT+MLGAD
Sbjct: 382 IYTSRRNLPPSKIDNSKLIDSIISHGSFLTNCLIEHSIVGIRSRVGSNVQLKDTVMLGAD 441
Query: 362 FYETDAEVASLLAEGRVPVGIGENTKIK 389
+YET+AEVA+LLAEG VP+GIGENTKI+
Sbjct: 442 YYETEAEVAALLAEGNVPIGIGENTKIQ 469
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 2EC: 7 |
| >sp|P55243|GLGL3_SOLTU Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic/amyloplastic OS=Solanum tuberosum GN=AGPS3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/389 (84%), Positives = 360/389 (92%), Gaps = 1/389 (0%)
Query: 2 EKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYIL 61
+K DARTV A+ILGGGAGTRL+PLTK+RAKPAVP+GGAYRLIDVPMSNCINSGINKVYIL
Sbjct: 42 KKGDARTVVAIILGGGAGTRLFPLTKRRAKPAVPMGGAYRLIDVPMSNCINSGINKVYIL 101
Query: 62 TQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLF 121
TQ+NSASLNRH+ARAYN+G+GVTF G VEVLAATQTPGE GKRWFQGTA AVRQFHWLF
Sbjct: 102 TQFNSASLNRHIARAYNFGNGVTFESGYVEVLAATQTPGELGKRWFQGTAHAVRQFHWLF 161
Query: 122 EDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINN 181
ED R+K IEDVLILSGDHLYRMDY+ FVQ+HRQSGADITIS LP+DDSRASDFGLMKI++
Sbjct: 162 EDARSKDIEDVLILSGDHLYRMDYLHFVQSHRQSGADITISSLPIDDSRASDFGLMKIDD 221
Query: 182 EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMG-VYLFKKEILLNLLRWR 240
GRV+SFSEKPKG DLKAMAVDTTVLGLS +EA+EKPYIAS+G VY+FKK+ILLNLLRWR
Sbjct: 222 TGRVMSFSEKPKGDDLKAMAVDTTVLGLSPEEAKEKPYIASIGKVYVFKKDILLNLLRWR 281
Query: 241 FPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATK 300
FPTANDFGSEIIPAS E +KAYLFNDYWEDIGTIRSFF ANLALT HPP FSFYDATK
Sbjct: 282 FPTANDFGSEIIPASTKEFCVKAYLFNDYWEDIGTIRSFFRANLALTEHPPRFSFYDATK 341
Query: 301 PIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGA 360
PIYTSRRNLPPS ID+SKIVDSI+SHG F+T+ F+EHSVVGIRSRI NVHLKDT+MLGA
Sbjct: 342 PIYTSRRNLPPSAIDNSKIVDSIVSHGIFLTNCFVEHSVVGIRSRIGTNVHLKDTVMLGA 401
Query: 361 DFYETDAEVASLLAEGRVPVGIGENTKIK 389
D+YETDAE+ S LAEG+VP+GIGENT+IK
Sbjct: 402 DYYETDAEIRSQLAEGKVPLGIGENTRIK 430
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Solanum tuberosum (taxid: 4113) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P55230|GLGL2_ARATH Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic OS=Arabidopsis thaliana GN=APL2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 598 bits (1542), Expect = e-170, Method: Compositional matrix adjust.
Identities = 270/388 (69%), Positives = 330/388 (85%)
Query: 2 EKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYIL 61
+ D + VA++ILGGGAGTRL+PLT +RAKPAVPIGG YRLID+PMSNCINSGI K++IL
Sbjct: 78 QNADPKNVASIILGGGAGTRLFPLTSKRAKPAVPIGGCYRLIDIPMSNCINSGIRKIFIL 137
Query: 62 TQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLF 121
TQ+NS SLNRHL+R YN+G+GV FGDG VEVLAATQT G+AGK+WFQGTADAVRQF W+F
Sbjct: 138 TQFNSFSLNRHLSRTYNFGNGVNFGDGFVEVLAATQTSGDAGKKWFQGTADAVRQFIWVF 197
Query: 122 EDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINN 181
ED + K +E VLILSGDHLYRMDYM+FVQ H +S ADIT+SCLPMD+SRASDFGL+KI+
Sbjct: 198 EDAKTKNVEHVLILSGDHLYRMDYMNFVQKHIESNADITVSCLPMDESRASDFGLLKIDQ 257
Query: 182 EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF 241
G+++ FSEKPKG DLKAM VDT++LGL +EA E PYIASMGVY+F+KE+LL LLR +
Sbjct: 258 SGKIIQFSEKPKGDDLKAMQVDTSILGLPPKEAAESPYIASMGVYVFRKEVLLKLLRSSY 317
Query: 242 PTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKP 301
PT+NDFGSEIIP + E ++A+LFNDYWEDIGTI SFF+ANLALT PP F FYD P
Sbjct: 318 PTSNDFGSEIIPLAVGEHNVQAFLFNDYWEDIGTIGSFFDANLALTEQPPKFQFYDQKTP 377
Query: 302 IYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGAD 361
+TS R LPP+K+D +I+DSI+SHG F+ ++HS+VGIRSR+ + V L+DTMM+GAD
Sbjct: 378 FFTSPRFLPPTKVDKCRILDSIVSHGCFLRECSVQHSIVGIRSRLESGVELQDTMMMGAD 437
Query: 362 FYETDAEVASLLAEGRVPVGIGENTKIK 389
FY+T+AE+ASLLAEG+VPVG+G+NTKIK
Sbjct: 438 FYQTEAEIASLLAEGKVPVGVGQNTKIK 465
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P55233|GLGL1_BETVU Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic OS=Beta vulgaris GN=AGPS1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 592 bits (1526), Expect = e-168, Method: Compositional matrix adjust.
Identities = 266/387 (68%), Positives = 326/387 (84%)
Query: 3 KRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILT 62
K D + VAA++LGGGAGTRL+PLT +RAKPAVPIGG YRLIDVPMSNCINSGI K++ILT
Sbjct: 83 KADPKNVAAIVLGGGAGTRLFPLTSRRAKPAVPIGGCYRLIDVPMSNCINSGIRKIFILT 142
Query: 63 QYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFE 122
Q+NS SLNRHLAR YN+G GV FGDG VEV AATQTPGE+GK+WFQGTADAVRQF W FE
Sbjct: 143 QFNSFSLNRHLARTYNFGDGVNFGDGFVEVFAATQTPGESGKKWFQGTADAVRQFFWAFE 202
Query: 123 DPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNE 182
D ++K +E ++ILSGDHLYRMDYM F Q H + ADIT+SC+PMDDSRASD+GLMKI++
Sbjct: 203 DSKSKDVEHIVILSGDHLYRMDYMSFWQKHIDTNADITVSCIPMDDSRASDYGLMKIDHT 262
Query: 183 GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP 242
GR++ F+EKPKG DL AM VDTTVLGLS EA PYIASMGVY+F+ ++L+ LL ++P
Sbjct: 263 GRIVHFAEKPKGSDLTAMQVDTTVLGLSDLEAMSNPYIASMGVYVFRTDVLMELLNRKYP 322
Query: 243 TANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPI 302
++NDFGSEIIP++ E ++AYLFNDYWEDIGTI+SFF++NLALT PP F FYD P
Sbjct: 323 SSNDFGSEIIPSAVGESNVQAYLFNDYWEDIGTIKSFFDSNLALTQQPPKFEFYDPKTPF 382
Query: 303 YTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADF 362
YTS R LPP+K+D KIVDSI+SHG F+ S I+HS+VG+RSR+ + V +DTMM+GAD+
Sbjct: 383 YTSARFLPPTKVDRCKIVDSIVSHGCFLQESSIQHSIVGVRSRLESGVEFQDTMMMGADY 442
Query: 363 YETDAEVASLLAEGRVPVGIGENTKIK 389
Y+T++E+ASLLAEG+VPVG+G+NTKIK
Sbjct: 443 YQTESEIASLLAEGKVPVGVGQNTKIK 469
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Beta vulgaris (taxid: 161934) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|Q00081|GLGL1_SOLTU Glucose-1-phosphate adenylyltransferase large subunit 1 (Fragment) OS=Solanum tuberosum GN=AGPS1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 570 bits (1470), Expect = e-162, Method: Compositional matrix adjust.
Identities = 262/391 (67%), Positives = 330/391 (84%), Gaps = 3/391 (0%)
Query: 1 MEKRDA--RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKV 58
+E+R A + VAAVILGGG GT+L+PLT + A PAVP+GG YRLID+PMSNCINS INK+
Sbjct: 28 LERRRANPKDVAAVILGGGEGTKLFPLTSRTATPAVPVGGCYRLIDIPMSNCINSAINKI 87
Query: 59 YILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFH 118
++LTQYNSA LNRH+AR Y +G+GV+FGDG VEVLAATQTPGEAGK+WFQGTADAVR+F
Sbjct: 88 FVLTQYNSAPLNRHIARTY-FGNGVSFGDGFVEVLAATQTPGEAGKKWFQGTADAVRKFI 146
Query: 119 WLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMK 178
W+FED +NK IE++++LSGDHLYRMDYM+ VQNH ADIT+SC P +DSRASDFGL+K
Sbjct: 147 WVFEDAKNKNIENIVVLSGDHLYRMDYMELVQNHIDRNADITLSCAPAEDSRASDFGLVK 206
Query: 179 INNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLR 238
I++ GRV+ F+EKPKG DLKAM VDTT++GLS Q+A++ PYIASMGVY+FK ++LL LL+
Sbjct: 207 IDSRGRVVQFAEKPKGFDLKAMQVDTTLVGLSPQDAKKSPYIASMGVYVFKTDVLLKLLK 266
Query: 239 WRFPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDA 298
W +PT+NDFGSEIIPA+ ++ ++AY+F DYWEDIGTI+SF+ A+LALT P F FYD
Sbjct: 267 WSYPTSNDFGSEIIPAAIDDYNVQAYIFKDYWEDIGTIKSFYNASLALTQEFPEFQFYDP 326
Query: 299 TKPIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMML 358
P YTS R LPP+KID+ KI D+IISHG F+ +EHS+VG RSR++ V LKDT M+
Sbjct: 327 KTPFYTSPRFLPPTKIDNCKIKDAIISHGCFLRDCSVEHSIVGERSRLDCGVELKDTFMM 386
Query: 359 GADFYETDAEVASLLAEGRVPVGIGENTKIK 389
GAD+Y+T++E+ASLLAEG+VP+GIGENTKI+
Sbjct: 387 GADYYQTESEIASLLAEGKVPIGIGENTKIR 417
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Solanum tuberosum (taxid: 4113) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P55242|GLGL2_SOLTU Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic/amyloplastic OS=Solanum tuberosum GN=AGPS2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 561 bits (1445), Expect = e-159, Method: Compositional matrix adjust.
Identities = 257/385 (66%), Positives = 318/385 (82%), Gaps = 2/385 (0%)
Query: 5 DARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQY 64
D + VA+VILGGG GTRL+PLT +RAKPAVPIGG YRLIDVPMSNCINSGI K++ILTQ+
Sbjct: 84 DPKAVASVILGGGVGTRLFPLTSRRAKPAVPIGGCYRLIDVPMSNCINSGIRKIFILTQF 143
Query: 65 NSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDP 124
NS SLNRHLA YN+G+GV FGDG VEVLA TQTPG+ K WFQ ADAVR+F W+FE+
Sbjct: 144 NSFSLNRHLA-TYNFGNGVGFGDGFVEVLAGTQTPGDGRKMWFQA-ADAVREFIWVFENQ 201
Query: 125 RNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGR 184
+NK +E ++ILSGDHLYRM+YMDFVQ H + ADIT+SC+PMDD RASDFGLMKI+ G
Sbjct: 202 KNKNVEHIIILSGDHLYRMNYMDFVQKHIDTNADITVSCVPMDDGRASDFGLMKIDETGA 261
Query: 185 VLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA 244
++ F+EKPKG LKAM VDT++LGLS+QEA PYIASMGVY+FK ++LLNLL+ +P+
Sbjct: 262 IIQFAEKPKGPALKAMQVDTSILGLSEQEASNFPYIASMGVYVFKTDVLLNLLKSAYPSC 321
Query: 245 NDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYT 304
NDFGSEIIP++ + ++AYLFNDYWEDIGT++SFF+ANLALT PP F F D P YT
Sbjct: 322 NDFGSEIIPSAVKDHNVQAYLFNDYWEDIGTVKSFFDANLALTKQPPKFDFNDPKTPFYT 381
Query: 305 SRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYE 364
S R LPP+K+D S+IVD+IISHG F+ I+HS+VG+RSR++ V KDTMM+GAD+Y+
Sbjct: 382 SARFLPPTKVDKSRIVDAIISHGCFLRECNIQHSIVGVRSRLDYGVEFKDTMMMGADYYQ 441
Query: 365 TDAEVASLLAEGRVPVGIGENTKIK 389
T+ E+ASLLAEG+VP+G+G NTKI+
Sbjct: 442 TECEIASLLAEGKVPIGVGPNTKIQ 466
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Solanum tuberosum (taxid: 4113) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P55231|GLGL3_ARATH Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic OS=Arabidopsis thaliana GN=APL3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 545 bits (1405), Expect = e-154, Method: Compositional matrix adjust.
Identities = 247/387 (63%), Positives = 316/387 (81%), Gaps = 1/387 (0%)
Query: 3 KRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILT 62
+ D + VAA+ILGGG G +L+PLTK+ A PAVP+GG YR+ID+PMSNCINS INK+++LT
Sbjct: 83 RADPKNVAAIILGGGDGAKLFPLTKRAATPAVPVGGCYRMIDIPMSNCINSCINKIFVLT 142
Query: 63 QYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFE 122
Q+NSASLNRHLAR Y +G+G+ FGDG VEVLAATQTPGEAGK+WFQGTADAVR+F W+FE
Sbjct: 143 QFNSASLNRHLARTY-FGNGINFGDGFVEVLAATQTPGEAGKKWFQGTADAVRKFLWVFE 201
Query: 123 DPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNE 182
D +N+ IE+++ILSGDHLYRM+YMDFVQ+H S ADIT+SC P+D+SRAS++GL+ I+
Sbjct: 202 DAKNRNIENIIILSGDHLYRMNYMDFVQHHVDSKADITLSCAPVDESRASEYGLVNIDRS 261
Query: 183 GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP 242
GRV+ FSEKP G DLK+M DTT+ GLS QEA + PYIASMGVY FK E LL LL WR+P
Sbjct: 262 GRVVHFSEKPTGIDLKSMQTDTTMHGLSHQEAAKSPYIASMGVYCFKTEALLKLLTWRYP 321
Query: 243 TANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPI 302
++NDFGSEIIPA+ + ++ Y++ DYWEDIGTI+SF+EAN+AL P F FYD P
Sbjct: 322 SSNDFGSEIIPAAIKDHNVQGYIYRDYWEDIGTIKSFYEANIALVEEHPKFEFYDQNTPF 381
Query: 303 YTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADF 362
YTS R LPP+K + +IV+S+ISHG F+ I+ S++G RSR++ V L+DT+MLGAD
Sbjct: 382 YTSPRFLPPTKTEKCRIVNSVISHGCFLGECSIQRSIIGERSRLDYGVELQDTLMLGADS 441
Query: 363 YETDAEVASLLAEGRVPVGIGENTKIK 389
Y+T++E+ASLLAEG VP+GIG +TKI+
Sbjct: 442 YQTESEIASLLAEGNVPIGIGRDTKIR 468
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|Q9SIK1|GLGL4_ARATH Probable glucose-1-phosphate adenylyltransferase large subunit, chloroplastic OS=Arabidopsis thaliana GN=At2g21590 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 528 bits (1361), Expect = e-149, Method: Compositional matrix adjust.
Identities = 245/387 (63%), Positives = 311/387 (80%), Gaps = 1/387 (0%)
Query: 3 KRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILT 62
K D + VAA+ILGGG G +L+PLT + A PAVP+GG YRLID+PMSNCINS INK+++LT
Sbjct: 85 KVDPQNVAAIILGGGNGAKLFPLTMRAATPAVPVGGCYRLIDIPMSNCINSCINKIFVLT 144
Query: 63 QYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFE 122
Q+NSASLNRHLAR Y G VEVLAATQTPGEAGK+WFQGTADAVR+F W+FE
Sbjct: 145 QFNSASLNRHLARTYFGNGINFGGGF-VEVLAATQTPGEAGKKWFQGTADAVRKFLWVFE 203
Query: 123 DPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNE 182
D +N+ IE++LILSGDHLYRM+YMDFVQ+H S ADIT+SC P+ +SRAS+FGL+KI+
Sbjct: 204 DAKNRNIENILILSGDHLYRMNYMDFVQSHVDSNADITLSCAPVSESRASNFGLVKIDRG 263
Query: 183 GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP 242
GRV+ FSEKP G DLK+M DTT+LGLS QEA + PYIASMGVY FK E LLNLL ++P
Sbjct: 264 GRVIHFSEKPTGVDLKSMQTDTTMLGLSHQEATDSPYIASMGVYCFKTEALLNLLTRQYP 323
Query: 243 TANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPI 302
++NDFGSE+IPA+ + ++ Y+F DYWEDIGTI++F+EANLAL P F FYD P
Sbjct: 324 SSNDFGSEVIPAAIRDHDVQGYIFRDYWEDIGTIKTFYEANLALVEERPKFEFYDPETPF 383
Query: 303 YTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADF 362
YTS R LPP+K + ++VDSIISHG F+ ++ S++G RSR++ V L+DT+MLGAD+
Sbjct: 384 YTSPRFLPPTKAEKCRMVDSIISHGCFLRECSVQRSIIGERSRLDYGVELQDTLMLGADY 443
Query: 363 YETDAEVASLLAEGRVPVGIGENTKIK 389
Y+T++E+ASLLAEG+VP+GIG++TKI+
Sbjct: 444 YQTESEIASLLAEGKVPIGIGKDTKIR 470
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P12299|GLGL2_WHEAT Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic OS=Triticum aestivum GN=AGP-L PE=2 SV=2 | Back alignment and function description |
|---|
Score = 503 bits (1295), Expect = e-141, Method: Compositional matrix adjust.
Identities = 233/385 (60%), Positives = 300/385 (77%), Gaps = 3/385 (0%)
Query: 5 DARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQY 64
D VAAVILGGG GT+L+PLT RA PAVPIGG YRLID+PMSNC NSGINK++++TQ+
Sbjct: 86 DPNEVAAVILGGGTGTQLFPLTSTRATPAVPIGGCYRLIDIPMSNCFNSGINKIFVMTQF 145
Query: 65 NSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDP 124
NSASLNRH+ R Y G G+ F DG VEVLAATQ PGEA WF+GTADAVR+F W+ ED
Sbjct: 146 NSASLNRHIHRTY-LGGGINFTDGSVEVLAATQMPGEAAG-WFRGTADAVRKFIWVLEDY 203
Query: 125 -RNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEG 183
+NK IE +LILSGD LYRMDYM+ VQ H ADIT+SC P+ +SRAS++GL+K ++ G
Sbjct: 204 YKNKSIEHILILSGDQLYRMDYMELVQKHVDDNADITLSCAPVGESRASEYGLVKFDSSG 263
Query: 184 RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243
RV+ FSEKPKG DL+AM VDT+ L + + + PYIASMGVY+FK+++LLNLL+ R+
Sbjct: 264 RVVQFSEKPKGDDLEAMKVDTSFLNFAIDDPAKYPYIASMGVYVFKRDVLLNLLKSRYAE 323
Query: 244 ANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIY 303
+DFGSEI+P + ++ ++AY+F DYWEDIGTIRSFF+AN+AL PP F FYD P +
Sbjct: 324 LHDFGSEILPRALHDHNVQAYVFTDYWEDIGTIRSFFDANMALCEQPPKFEFYDPKTPFF 383
Query: 304 TSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFY 363
TS R LPP+K D +I ++IISHG F+ IEHS++G+RSR+N+ LK+ MM+GAD Y
Sbjct: 384 TSPRYLPPTKSDKCRIKEAIISHGCFLRECKIEHSIIGVRSRLNSGSELKNAMMMGADSY 443
Query: 364 ETDAEVASLLAEGRVPVGIGENTKI 388
ET+ E++ L++EG+VP+G+GENTKI
Sbjct: 444 ETEDEISRLMSEGKVPIGVGENTKI 468
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Triticum aestivum (taxid: 4565) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P30524|GLGL1_HORVU Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic/amyloplastic OS=Hordeum vulgare PE=2 SV=2 | Back alignment and function description |
|---|
Score = 501 bits (1290), Expect = e-141, Method: Compositional matrix adjust.
Identities = 232/385 (60%), Positives = 300/385 (77%), Gaps = 3/385 (0%)
Query: 5 DARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQY 64
D VAAVILGGG GT+L+PLT RA PAVPIGG YRLID+PMSNC NSGINK++++TQ+
Sbjct: 87 DPNEVAAVILGGGTGTQLFPLTSTRATPAVPIGGCYRLIDIPMSNCFNSGINKIFVMTQF 146
Query: 65 NSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDP 124
NSASLNRH+ R Y G G+ F DG VEVLAATQ PGEA WF+GTADAVR+F W+ ED
Sbjct: 147 NSASLNRHIHRTY-LGGGINFTDGSVEVLAATQMPGEAAG-WFRGTADAVRKFIWVLEDY 204
Query: 125 -RNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEG 183
++K IE +LILSGD LYRMDYM+ VQ H ADIT+SC P+ +SRAS++GL+K ++ G
Sbjct: 205 YKHKSIEHILILSGDQLYRMDYMELVQKHVDDNADITLSCAPVGESRASEYGLVKFDSSG 264
Query: 184 RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243
RV+ FSEKPKG DL+AM VDT+ L + + + PYIASMGVY+FK+++LLNLL+ R+
Sbjct: 265 RVIQFSEKPKGDDLEAMKVDTSFLNFAIDDPAKYPYIASMGVYVFKRDVLLNLLKSRYAE 324
Query: 244 ANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIY 303
+DFGSEI+P + ++ ++AY+F DYWEDIGTIRSFF+AN+AL PP F FYD P +
Sbjct: 325 LHDFGSEILPRALHDHNVQAYVFTDYWEDIGTIRSFFDANMALCEQPPKFEFYDPKTPFF 384
Query: 304 TSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFY 363
TS R LPP+K D +I ++IISHG F+ IEHS++G+RSR+N+ LK+ MM+GAD Y
Sbjct: 385 TSPRYLPPTKSDKCRIKEAIISHGCFLRECKIEHSIIGVRSRLNSGSELKNAMMMGADSY 444
Query: 364 ETDAEVASLLAEGRVPVGIGENTKI 388
ET+ E++ L++EG+VP+G+GENTKI
Sbjct: 445 ETEDEISRLMSEGKVPIGVGENTKI 469
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Hordeum vulgare (taxid: 4513) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 415 | ||||||
| 225432564 | 520 | PREDICTED: glucose-1-phosphate adenylylt | 0.937 | 0.748 | 0.897 | 0.0 | |
| 297737003 | 482 | unnamed protein product [Vitis vinifera] | 0.937 | 0.807 | 0.897 | 0.0 | |
| 255552303 | 533 | glucose-1-phosphate adenylyltransferase, | 0.937 | 0.729 | 0.889 | 0.0 | |
| 359807441 | 520 | uncharacterized protein LOC100810451 [Gl | 0.937 | 0.748 | 0.886 | 0.0 | |
| 356563435 | 523 | PREDICTED: glucose-1-phosphate adenylylt | 0.937 | 0.743 | 0.881 | 0.0 | |
| 13487783 | 525 | ADP-glucose pyrophosphorylase [Cicer ari | 0.937 | 0.740 | 0.884 | 0.0 | |
| 449463124 | 518 | PREDICTED: glucose-1-phosphate adenylylt | 0.937 | 0.750 | 0.884 | 0.0 | |
| 449432718 | 522 | PREDICTED: glucose-1-phosphate adenylylt | 0.937 | 0.745 | 0.876 | 0.0 | |
| 449515371 | 522 | PREDICTED: glucose-1-phosphate adenylylt | 0.937 | 0.745 | 0.876 | 0.0 | |
| 224100249 | 528 | predicted protein [Populus trichocarpa] | 0.937 | 0.736 | 0.879 | 0.0 |
| >gi|225432564|ref|XP_002281069.1| PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 741 bits (1913), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/389 (89%), Positives = 373/389 (95%)
Query: 1 MEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI 60
MEKRD RTV AVILGGGAGTRL+PLTK+RAKPAVPIGG+YRLIDVPMSNCINSGINKVYI
Sbjct: 79 MEKRDPRTVVAVILGGGAGTRLFPLTKRRAKPAVPIGGSYRLIDVPMSNCINSGINKVYI 138
Query: 61 LTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWL 120
LTQ+NSASLNRHLARAYN+G GV FGDG VE LAATQTPGEAGKRWFQGTADAVRQFHWL
Sbjct: 139 LTQFNSASLNRHLARAYNFGHGVNFGDGYVEALAATQTPGEAGKRWFQGTADAVRQFHWL 198
Query: 121 FEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN 180
FED R+K IEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKI+
Sbjct: 199 FEDQRSKEIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKID 258
Query: 181 NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR 240
N+GRVL FSEKPKG+DLKAM VDT VLGLS++EAE+KPYIASMGVY+FKKEILLNLLRWR
Sbjct: 259 NKGRVLFFSEKPKGEDLKAMEVDTKVLGLSREEAEKKPYIASMGVYVFKKEILLNLLRWR 318
Query: 241 FPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATK 300
FPTANDFGSEIIPASA E F+KAYLFNDYWEDIGTIRSFFEANLALTAHPP FSFYDATK
Sbjct: 319 FPTANDFGSEIIPASAKEFFIKAYLFNDYWEDIGTIRSFFEANLALTAHPPRFSFYDATK 378
Query: 301 PIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGA 360
P+YTSRRNLPPSKIDDSKIVDSIISHGSF+ + FIEHSVVGIRSR+N+NVHLKDT+MLGA
Sbjct: 379 PMYTSRRNLPPSKIDDSKIVDSIISHGSFLNNCFIEHSVVGIRSRVNSNVHLKDTVMLGA 438
Query: 361 DFYETDAEVASLLAEGRVPVGIGENTKIK 389
D+YETD+EVASLLAEGRVP+GIGENT+IK
Sbjct: 439 DYYETDSEVASLLAEGRVPIGIGENTRIK 467
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297737003|emb|CBI26204.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 740 bits (1910), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/389 (89%), Positives = 373/389 (95%)
Query: 1 MEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI 60
MEKRD RTV AVILGGGAGTRL+PLTK+RAKPAVPIGG+YRLIDVPMSNCINSGINKVYI
Sbjct: 41 MEKRDPRTVVAVILGGGAGTRLFPLTKRRAKPAVPIGGSYRLIDVPMSNCINSGINKVYI 100
Query: 61 LTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWL 120
LTQ+NSASLNRHLARAYN+G GV FGDG VE LAATQTPGEAGKRWFQGTADAVRQFHWL
Sbjct: 101 LTQFNSASLNRHLARAYNFGHGVNFGDGYVEALAATQTPGEAGKRWFQGTADAVRQFHWL 160
Query: 121 FEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN 180
FED R+K IEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKI+
Sbjct: 161 FEDQRSKEIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKID 220
Query: 181 NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR 240
N+GRVL FSEKPKG+DLKAM VDT VLGLS++EAE+KPYIASMGVY+FKKEILLNLLRWR
Sbjct: 221 NKGRVLFFSEKPKGEDLKAMEVDTKVLGLSREEAEKKPYIASMGVYVFKKEILLNLLRWR 280
Query: 241 FPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATK 300
FPTANDFGSEIIPASA E F+KAYLFNDYWEDIGTIRSFFEANLALTAHPP FSFYDATK
Sbjct: 281 FPTANDFGSEIIPASAKEFFIKAYLFNDYWEDIGTIRSFFEANLALTAHPPRFSFYDATK 340
Query: 301 PIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGA 360
P+YTSRRNLPPSKIDDSKIVDSIISHGSF+ + FIEHSVVGIRSR+N+NVHLKDT+MLGA
Sbjct: 341 PMYTSRRNLPPSKIDDSKIVDSIISHGSFLNNCFIEHSVVGIRSRVNSNVHLKDTVMLGA 400
Query: 361 DFYETDAEVASLLAEGRVPVGIGENTKIK 389
D+YETD+EVASLLAEGRVP+GIGENT+IK
Sbjct: 401 DYYETDSEVASLLAEGRVPIGIGENTRIK 429
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255552303|ref|XP_002517196.1| glucose-1-phosphate adenylyltransferase, putative [Ricinus communis] gi|223543831|gb|EEF45359.1| glucose-1-phosphate adenylyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 737 bits (1903), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/389 (88%), Positives = 373/389 (95%)
Query: 1 MEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI 60
MEKRD RTV A+ILGGGAGTRL+PLTK+RAKPAVPIGGAYRLIDVPMSNCINSGINKVYI
Sbjct: 92 MEKRDPRTVVAIILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI 151
Query: 61 LTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWL 120
LTQ+NSASLNRHLARAYN+G+G+ FGDG VEVLAATQTPGEAGKRWFQGTADAVRQFHWL
Sbjct: 152 LTQFNSASLNRHLARAYNFGNGINFGDGFVEVLAATQTPGEAGKRWFQGTADAVRQFHWL 211
Query: 121 FEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN 180
FED R+K I+DVL+LSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLM I+
Sbjct: 212 FEDARSKDIDDVLVLSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMNID 271
Query: 181 NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR 240
N+GRVLSFSEKPKG DLKAMAVDTTVLGLSK+EAE+KPYIASMGVY+FKKEILLNLLRWR
Sbjct: 272 NKGRVLSFSEKPKGADLKAMAVDTTVLGLSKEEAEKKPYIASMGVYVFKKEILLNLLRWR 331
Query: 241 FPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATK 300
FPTANDFGSEIIPASA E F+KAYLFNDYWEDIGTI+SFF ANLALT HPP FSFYDA K
Sbjct: 332 FPTANDFGSEIIPASAKEFFIKAYLFNDYWEDIGTIQSFFAANLALTEHPPRFSFYDAAK 391
Query: 301 PIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGA 360
P+YTSRRNLPPSKI++ KIVDSIISHGSF+T+SFIEHSVVGIRSRIN+NVHLKDT+MLGA
Sbjct: 392 PMYTSRRNLPPSKIENCKIVDSIISHGSFLTNSFIEHSVVGIRSRINSNVHLKDTVMLGA 451
Query: 361 DFYETDAEVASLLAEGRVPVGIGENTKIK 389
DFYETD EVA+LLAEGRVP+GIGENTKI+
Sbjct: 452 DFYETDDEVAALLAEGRVPIGIGENTKIR 480
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359807441|ref|NP_001241391.1| uncharacterized protein LOC100810451 [Glycine max] gi|255639628|gb|ACU20108.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 736 bits (1901), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/389 (88%), Positives = 376/389 (96%)
Query: 1 MEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI 60
ME+R+ RTV AVILGGGAGTRL+PLTK+RAKPAVPIGGAYRLIDVPMSNCINSGINKVYI
Sbjct: 79 MERRNPRTVLAVILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI 138
Query: 61 LTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWL 120
LTQ+NSASLNRH+ARAYN G+GVTFGDG VEVLAATQTPGEAGK+WFQGTADAVRQFHWL
Sbjct: 139 LTQFNSASLNRHIARAYNSGNGVTFGDGYVEVLAATQTPGEAGKKWFQGTADAVRQFHWL 198
Query: 121 FEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN 180
FEDPR+K IEDVLILSGDHLYRMDYMDFVQNHR+SGADIT+SCLPMDDSRASDFGLMKI+
Sbjct: 199 FEDPRSKDIEDVLILSGDHLYRMDYMDFVQNHRESGADITLSCLPMDDSRASDFGLMKID 258
Query: 181 NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR 240
N+GRVLSFSEKPKG++LKAM VDTTVLGLSK EA++KPYIASMGVY+FKKEILLNLLRWR
Sbjct: 259 NKGRVLSFSEKPKGEELKAMQVDTTVLGLSKDEAQKKPYIASMGVYVFKKEILLNLLRWR 318
Query: 241 FPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATK 300
FPTANDFGSE+IPASA E ++KAYLFNDYWEDIGTIRSFFEANLALT HPP FSFYDA K
Sbjct: 319 FPTANDFGSEVIPASAREFYMKAYLFNDYWEDIGTIRSFFEANLALTEHPPRFSFYDAAK 378
Query: 301 PIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGA 360
P+YTSRRNLPPSKID+SKIVDSIISHGSF+ +SFIEHSVVGIRSRIN+N+HLKDT+MLGA
Sbjct: 379 PMYTSRRNLPPSKIDNSKIVDSIISHGSFLNNSFIEHSVVGIRSRINSNIHLKDTVMLGA 438
Query: 361 DFYETDAEVASLLAEGRVPVGIGENTKIK 389
D+YETDAEVA+LLAEGRVP+GIGENTKIK
Sbjct: 439 DYYETDAEVAALLAEGRVPIGIGENTKIK 467
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356563435|ref|XP_003549968.1| PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 734 bits (1894), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/389 (88%), Positives = 375/389 (96%)
Query: 1 MEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI 60
ME+R+ RTV AVILGGGAGTRL+PLTK+RAKPAVPIGGAYRLIDVPMSNCINSGINKVYI
Sbjct: 82 MERRNPRTVLAVILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI 141
Query: 61 LTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWL 120
LTQ+NSASLNRH+ARAYN G+GVTFGDG VEVLAATQTPGEAGK+WFQGTADAVRQFHWL
Sbjct: 142 LTQFNSASLNRHIARAYNSGNGVTFGDGYVEVLAATQTPGEAGKKWFQGTADAVRQFHWL 201
Query: 121 FEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN 180
FEDPR+K IEDVLILSGDHLYRMDYMDFVQNHR+SGADIT+SCLPMDDSRASDFGLM+I+
Sbjct: 202 FEDPRSKDIEDVLILSGDHLYRMDYMDFVQNHRESGADITLSCLPMDDSRASDFGLMRID 261
Query: 181 NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR 240
N+GR+LSFSEKPKG++LKAM VDTTVLGLSK EA++KPYIASMGVY+FKKEILLNLLRWR
Sbjct: 262 NKGRILSFSEKPKGEELKAMQVDTTVLGLSKDEAQKKPYIASMGVYVFKKEILLNLLRWR 321
Query: 241 FPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATK 300
FPTANDFGSE+IPASA E ++KAYLFNDYWEDIGTIRSFFEANLALT HPP FSFYDA K
Sbjct: 322 FPTANDFGSEVIPASAREFYMKAYLFNDYWEDIGTIRSFFEANLALTEHPPRFSFYDAAK 381
Query: 301 PIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGA 360
P+YTSRRNLPPSKID+SKIVDSIISHGSF+ +SFIEHSVVGIRSRIN+NVHLKDT+MLGA
Sbjct: 382 PMYTSRRNLPPSKIDNSKIVDSIISHGSFLNNSFIEHSVVGIRSRINSNVHLKDTVMLGA 441
Query: 361 DFYETDAEVASLLAEGRVPVGIGENTKIK 389
D+YETDAEV +LLAEGRVP+GIGENTKIK
Sbjct: 442 DYYETDAEVVALLAEGRVPIGIGENTKIK 470
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|13487783|gb|AAK27718.1|AF356002_1 ADP-glucose pyrophosphorylase [Cicer arietinum] | Back alignment and taxonomy information |
|---|
Score = 733 bits (1891), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/389 (88%), Positives = 371/389 (95%)
Query: 1 MEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI 60
+EKRD TV A+ILGGGAGTRL+PLTK+RAKPAVPIGGAYRLIDVPMSNCINSGINKVYI
Sbjct: 84 LEKRDPSTVVAIILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI 143
Query: 61 LTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWL 120
LTQ+NSASLNRH+ARAYN G+GVTFGDG VEVLAATQTPGE GK+WFQGTADAVRQFHWL
Sbjct: 144 LTQFNSASLNRHIARAYNSGTGVTFGDGYVEVLAATQTPGEQGKKWFQGTADAVRQFHWL 203
Query: 121 FEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN 180
FED R+K IEDVLILSGDHLYRMDYMDFVQNHR+SGADIT+SCLPMDDSRASDFGLMKI+
Sbjct: 204 FEDARSKDIEDVLILSGDHLYRMDYMDFVQNHRESGADITLSCLPMDDSRASDFGLMKID 263
Query: 181 NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR 240
N+GRVLSFSEKPKG+DLKAM VDTTVLGLSK EA EKPYIASMGVY+FKKEILLNLLRWR
Sbjct: 264 NKGRVLSFSEKPKGEDLKAMQVDTTVLGLSKDEALEKPYIASMGVYVFKKEILLNLLRWR 323
Query: 241 FPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATK 300
FPTANDFGSEIIPASA E ++KAYLFNDYWEDIGTIRSFFEANLALT HP FSFYDA K
Sbjct: 324 FPTANDFGSEIIPASAREFYMKAYLFNDYWEDIGTIRSFFEANLALTEHPSKFSFYDAAK 383
Query: 301 PIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGA 360
P+YTSRRNLPPSKID+SKIVDSI+SHGSF+ +SFIEHSVVGIRSRIN+NVHLKDT+MLGA
Sbjct: 384 PMYTSRRNLPPSKIDNSKIVDSIVSHGSFLNNSFIEHSVVGIRSRINSNVHLKDTVMLGA 443
Query: 361 DFYETDAEVASLLAEGRVPVGIGENTKIK 389
DFYET+AEVA+LLAEGRVP+GIGENTKIK
Sbjct: 444 DFYETEAEVAALLAEGRVPIGIGENTKIK 472
|
Source: Cicer arietinum Species: Cicer arietinum Genus: Cicer Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449463124|ref|XP_004149284.1| PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 731 bits (1886), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/389 (88%), Positives = 368/389 (94%)
Query: 1 MEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI 60
MEKRD+RTV AVILGGGAGTRL+PLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI
Sbjct: 77 MEKRDSRTVVAVILGGGAGTRLFPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI 136
Query: 61 LTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWL 120
LTQ+NSASLNRHLARAYN+GSGVT GDG VEVLAATQTPGEAGKRWFQGTADAVRQFHWL
Sbjct: 137 LTQFNSASLNRHLARAYNFGSGVTLGDGFVEVLAATQTPGEAGKRWFQGTADAVRQFHWL 196
Query: 121 FEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN 180
FED R+K IEDVLILSGDHLYRMDYMDFVQNHRQSGADIT+SC+P+DDSRASDFGLMKI+
Sbjct: 197 FEDARSKDIEDVLILSGDHLYRMDYMDFVQNHRQSGADITLSCIPIDDSRASDFGLMKID 256
Query: 181 NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR 240
N GRV+SFSEKP+GKDLKAM VDTTVLGLSK EA KPYIASMGVY+FKKEILLN+LRWR
Sbjct: 257 NSGRVISFSEKPRGKDLKAMEVDTTVLGLSKDEALRKPYIASMGVYIFKKEILLNILRWR 316
Query: 241 FPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATK 300
FPTANDFGSEIIP SA E +KAYLFNDYWEDIGTIRSFFEANLALT PP FSFYD TK
Sbjct: 317 FPTANDFGSEIIPFSAREFLMKAYLFNDYWEDIGTIRSFFEANLALTEQPPRFSFYDETK 376
Query: 301 PIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGA 360
PIYTSRRNLPP+KID+ KIVDSIISHG F+T+SFI+HSVVGIRSRIN+NVHLKDT+MLGA
Sbjct: 377 PIYTSRRNLPPTKIDNCKIVDSIISHGCFLTNSFIDHSVVGIRSRINSNVHLKDTVMLGA 436
Query: 361 DFYETDAEVASLLAEGRVPVGIGENTKIK 389
DFYET+ EVA+LLAEGRVP+GIGENTKIK
Sbjct: 437 DFYETEGEVAALLAEGRVPIGIGENTKIK 465
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449432718|ref|XP_004134146.1| PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 729 bits (1883), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/389 (87%), Positives = 370/389 (95%)
Query: 1 MEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI 60
MEKRD RTV A+ILGGGAGTRL+PLTK+RAKPAVPIGGAYRLIDVPMSNCINSGINKVYI
Sbjct: 81 MEKRDPRTVVAIILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI 140
Query: 61 LTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWL 120
LTQ+NSASLNRHLARAYN+ GVTFGDG VEVLAATQTPGEAGK WFQGTADAVRQFHWL
Sbjct: 141 LTQFNSASLNRHLARAYNFSGGVTFGDGYVEVLAATQTPGEAGKNWFQGTADAVRQFHWL 200
Query: 121 FEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN 180
FED R+K IEDVLILSGDHLYRMDYMDFVQNHRQSGADIT+SCLPMDDSRASDFGLMKI+
Sbjct: 201 FEDARSKNIEDVLILSGDHLYRMDYMDFVQNHRQSGADITLSCLPMDDSRASDFGLMKID 260
Query: 181 NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR 240
+GR++SFSEKPKG+DLKAMAVDTT+LGLSK+EA++KPYIASMGVY+FKK+ILLNLLRWR
Sbjct: 261 EKGRIISFSEKPKGQDLKAMAVDTTILGLSKEEAQKKPYIASMGVYVFKKDILLNLLRWR 320
Query: 241 FPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATK 300
FPTANDFGSEIIPASA E F+KAYLFNDYWEDIGTIRSFFEANLALT PP FSFYDA K
Sbjct: 321 FPTANDFGSEIIPASAKEFFIKAYLFNDYWEDIGTIRSFFEANLALTEQPPRFSFYDAAK 380
Query: 301 PIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGA 360
P++TSRRNLPP+KID SKIVDSIISHGSF+ S FIEHSV+GIRSRIN+NVHLKDT+MLGA
Sbjct: 381 PMFTSRRNLPPTKIDQSKIVDSIISHGSFLNSCFIEHSVIGIRSRINSNVHLKDTVMLGA 440
Query: 361 DFYETDAEVASLLAEGRVPVGIGENTKIK 389
D+YET+ EVASLLAEGRVP+GIGENTKIK
Sbjct: 441 DYYETEDEVASLLAEGRVPIGIGENTKIK 469
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449515371|ref|XP_004164723.1| PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 729 bits (1883), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/389 (87%), Positives = 370/389 (95%)
Query: 1 MEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI 60
MEKRD RTV A+ILGGGAGTRL+PLTK+RAKPAVPIGGAYRLIDVPMSNCINSGINKVYI
Sbjct: 81 MEKRDPRTVVAIILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI 140
Query: 61 LTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWL 120
LTQ+NSASLNRHLARAYN+ GVTFGDG VEVLAATQTPGEAGK WFQGTADAVRQFHWL
Sbjct: 141 LTQFNSASLNRHLARAYNFSGGVTFGDGYVEVLAATQTPGEAGKNWFQGTADAVRQFHWL 200
Query: 121 FEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN 180
FED R+K IEDVLILSGDHLYRMDYMDFVQNHRQSGADIT+SCLPMDDSRASDFGLMKI+
Sbjct: 201 FEDARSKNIEDVLILSGDHLYRMDYMDFVQNHRQSGADITLSCLPMDDSRASDFGLMKID 260
Query: 181 NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR 240
+GR++SFSEKPKG+DLKAMAVDTT+LGLSK+EA++KPYIASMGVY+FKK+ILLNLLRWR
Sbjct: 261 EKGRIISFSEKPKGQDLKAMAVDTTILGLSKEEAQKKPYIASMGVYVFKKDILLNLLRWR 320
Query: 241 FPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATK 300
FPTANDFGSEIIPASA E F+KAYLFNDYWEDIGTIRSFFEANLALT PP FSFYDA K
Sbjct: 321 FPTANDFGSEIIPASAKEFFIKAYLFNDYWEDIGTIRSFFEANLALTEQPPRFSFYDAAK 380
Query: 301 PIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGA 360
P++TSRRNLPP+KID SKIVDSIISHGSF+ S FIEHSV+GIRSRIN+NVHLKDT+MLGA
Sbjct: 381 PMFTSRRNLPPTKIDQSKIVDSIISHGSFLNSCFIEHSVIGIRSRINSNVHLKDTVMLGA 440
Query: 361 DFYETDAEVASLLAEGRVPVGIGENTKIK 389
D+YET+ EVASLLAEGRVP+GIGENTKIK
Sbjct: 441 DYYETEDEVASLLAEGRVPIGIGENTKIK 469
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224100249|ref|XP_002311802.1| predicted protein [Populus trichocarpa] gi|222851622|gb|EEE89169.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/389 (87%), Positives = 367/389 (94%)
Query: 1 MEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI 60
MEKRD RTV AVILGGGAGTRL+PLTK+RAKPAVPIGG+YRLIDVPMSNCINSGINKVYI
Sbjct: 87 MEKRDPRTVVAVILGGGAGTRLFPLTKRRAKPAVPIGGSYRLIDVPMSNCINSGINKVYI 146
Query: 61 LTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWL 120
LTQYNSASLNRHLARAYN G+GV+FGDG VE LAATQTPGEAGK+WFQGTADAVRQFHWL
Sbjct: 147 LTQYNSASLNRHLARAYNLGNGVSFGDGFVEALAATQTPGEAGKKWFQGTADAVRQFHWL 206
Query: 121 FEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN 180
FE PR+K IEDVLILSGDHLYRMDYMDFVQNHRQ GADIT+SCLPMDDSRASDFGLMKI+
Sbjct: 207 FEGPRSKEIEDVLILSGDHLYRMDYMDFVQNHRQGGADITLSCLPMDDSRASDFGLMKID 266
Query: 181 NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR 240
N+GRVLSFSEKPKG DLKAM VDTTVLGLSK+EA +KPYIASMGVY+FKKEILLNLLRWR
Sbjct: 267 NKGRVLSFSEKPKGVDLKAMEVDTTVLGLSKEEALKKPYIASMGVYVFKKEILLNLLRWR 326
Query: 241 FPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATK 300
FPTANDFGSEIIPASA E ++KAYLFNDYWEDIGTIRSFF ANLALT HPP FSFYDA K
Sbjct: 327 FPTANDFGSEIIPASAKEFYMKAYLFNDYWEDIGTIRSFFAANLALTEHPPRFSFYDAAK 386
Query: 301 PIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGA 360
P+YTSRRNLPPSKID SKIVDSIISHGSF+ + FIEHSV+GIRSRIN+N HL+DT+MLGA
Sbjct: 387 PMYTSRRNLPPSKIDSSKIVDSIISHGSFLNNCFIEHSVIGIRSRINSNAHLQDTVMLGA 446
Query: 361 DFYETDAEVASLLAEGRVPVGIGENTKIK 389
DFYET+AEVAS++AEG VPVGIGENTKIK
Sbjct: 447 DFYETEAEVASVVAEGSVPVGIGENTKIK 475
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 415 | ||||||
| TAIR|locus:2182132 | 522 | APL1 "ADP glucose pyrophosphor | 0.932 | 0.741 | 0.819 | 5.4e-173 | |
| TAIR|locus:2199241 | 518 | APL2 "ADPGLC-PPase large subun | 0.934 | 0.749 | 0.677 | 1e-146 | |
| TAIR|locus:2136358 | 521 | APL3 [Arabidopsis thaliana (ta | 0.930 | 0.740 | 0.622 | 3.3e-134 | |
| TAIR|locus:2049364 | 523 | APL4 [Arabidopsis thaliana (ta | 0.930 | 0.738 | 0.625 | 5.4e-134 | |
| TAIR|locus:2156263 | 520 | ADG1 "ADP glucose pyrophosphor | 0.908 | 0.725 | 0.567 | 1.3e-114 | |
| UNIPROTKB|P15280 | 514 | AGPS "Glucose-1-phosphate aden | 0.915 | 0.739 | 0.564 | 2.8e-114 | |
| TAIR|locus:2032003 | 476 | APS2 "AT1G05610" [Arabidopsis | 0.881 | 0.768 | 0.389 | 5.8e-66 | |
| TIGR_CMR|SO_1498 | 420 | SO_1498 "glucose-1-phosphate a | 0.686 | 0.678 | 0.391 | 2.7e-45 | |
| UNIPROTKB|Q9KRB5 | 405 | glgC1 "Glucose-1-phosphate ade | 0.795 | 0.814 | 0.337 | 2.4e-44 | |
| TIGR_CMR|VC_1727 | 405 | VC_1727 "glucose-1-phosphate a | 0.795 | 0.814 | 0.337 | 2.4e-44 |
| TAIR|locus:2182132 APL1 "ADP glucose pyrophosphorylase large subunit 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1681 (596.8 bits), Expect = 5.4e-173, P = 5.4e-173
Identities = 318/388 (81%), Positives = 352/388 (90%)
Query: 2 EKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYIL 61
EKRD RTVA++ILGGGAGTRL+PLTK+RAKPAVPIGGAYRLIDVPMSNCINSGINKVYIL
Sbjct: 83 EKRDPRTVASIILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKVYIL 142
Query: 62 TQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLF 121
TQYNSASLNRHLARAYN +G+ FGDG VEVLAATQTPGE+GKRWFQGTADAVRQFHWLF
Sbjct: 143 TQYNSASLNRHLARAYN-SNGLGFGDGYVEVLAATQTPGESGKRWFQGTADAVRQFHWLF 201
Query: 122 EDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINN 181
ED R+K IEDVLILSGDHLYRMDYMDF+Q+HRQSGADI+ISC+P+DD RASDFGLMKI++
Sbjct: 202 EDARSKDIEDVLILSGDHLYRMDYMDFIQDHRQSGADISISCIPIDDRRASDFGLMKIDD 261
Query: 182 EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF 241
+GRV+SFSEKPKG DLKAMAVDTT+LGLSK+EAE+KPYIASMGVY+FKKEILLNLLRWRF
Sbjct: 262 KGRVISFSEKPKGDDLKAMAVDTTILGLSKEEAEKKPYIASMGVYVFKKEILLNLLRWRF 321
Query: 242 PTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKP 301
PTANDFGSEIIP SA E ++ AYLFNDYWEDIGTIRSFFEANLALT HP FSFYDA KP
Sbjct: 322 PTANDFGSEIIPFSAKEFYVNAYLFNDYWEDIGTIRSFFEANLALTEHPGAFSFYDAAKP 381
Query: 302 IYTSRRNLPPXXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGAD 361
IYTSRRNLPP HGSF+T+ IEHS+VGIRSR+ +NV LKDT+MLGAD
Sbjct: 382 IYTSRRNLPPSKIDNSKLIDSIISHGSFLTNCLIEHSIVGIRSRVGSNVQLKDTVMLGAD 441
Query: 362 FYETDAEVASLLAEGRVPVGIGENTKIK 389
+YET+AEVA+LLAEG VP+GIGENTKI+
Sbjct: 442 YYETEAEVAALLAEGNVPIGIGENTKIQ 469
|
|
| TAIR|locus:2199241 APL2 "ADPGLC-PPase large subunit" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1433 (509.5 bits), Expect = 1.0e-146, P = 1.0e-146
Identities = 263/388 (67%), Positives = 318/388 (81%)
Query: 2 EKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYIL 61
+ D + VA++ILGGGAGTRL+PLT +RAKPAVPIGG YRLID+PMSNCINSGI K++IL
Sbjct: 78 QNADPKNVASIILGGGAGTRLFPLTSKRAKPAVPIGGCYRLIDIPMSNCINSGIRKIFIL 137
Query: 62 TQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLF 121
TQ+NS SLNRHL+R YN+G+GV FGDG VEVLAATQT G+AGK+WFQGTADAVRQF W+F
Sbjct: 138 TQFNSFSLNRHLSRTYNFGNGVNFGDGFVEVLAATQTSGDAGKKWFQGTADAVRQFIWVF 197
Query: 122 EDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINN 181
ED + K +E VLILSGDHLYRMDYM+FVQ H +S ADIT+SCLPMD+SRASDFGL+KI+
Sbjct: 198 EDAKTKNVEHVLILSGDHLYRMDYMNFVQKHIESNADITVSCLPMDESRASDFGLLKIDQ 257
Query: 182 EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF 241
G+++ FSEKPKG DLKAM VDT++LGL +EA E PYIASMGVY+F+KE+LL LLR +
Sbjct: 258 SGKIIQFSEKPKGDDLKAMQVDTSILGLPPKEAAESPYIASMGVYVFRKEVLLKLLRSSY 317
Query: 242 PTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKP 301
PT+NDFGSEIIP + E ++A+LFNDYWEDIGTI SFF+ANLALT PP F FYD P
Sbjct: 318 PTSNDFGSEIIPLAVGEHNVQAFLFNDYWEDIGTIGSFFDANLALTEQPPKFQFYDQKTP 377
Query: 302 IYTSRRNLPPXXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGAD 361
+TS R LPP HG F+ ++HS+VGIRSR+ + V L+DTMM+GAD
Sbjct: 378 FFTSPRFLPPTKVDKCRILDSIVSHGCFLRECSVQHSIVGIRSRLESGVELQDTMMMGAD 437
Query: 362 FYETDAEVASLLAEGRVPVGIGENTKIK 389
FY+T+AE+ASLLAEG+VPVG+G+NTKIK
Sbjct: 438 FYQTEAEIASLLAEGKVPVGVGQNTKIK 465
|
|
| TAIR|locus:2136358 APL3 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1315 (468.0 bits), Expect = 3.3e-134, P = 3.3e-134
Identities = 241/387 (62%), Positives = 305/387 (78%)
Query: 3 KRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILT 62
+ D + VAA+ILGGG G +L+PLTK+ A PAVP+GG YR+ID+PMSNCINS INK+++LT
Sbjct: 83 RADPKNVAAIILGGGDGAKLFPLTKRAATPAVPVGGCYRMIDIPMSNCINSCINKIFVLT 142
Query: 63 QYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFE 122
Q+NSASLNRHLAR Y +G+G+ FGDG VEVLAATQTPGEAGK+WFQGTADAVR+F W+FE
Sbjct: 143 QFNSASLNRHLARTY-FGNGINFGDGFVEVLAATQTPGEAGKKWFQGTADAVRKFLWVFE 201
Query: 123 DPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNE 182
D +N+ IE+++ILSGDHLYRM+YMDFVQ+H S ADIT+SC P+D+SRAS++GL+ I+
Sbjct: 202 DAKNRNIENIIILSGDHLYRMNYMDFVQHHVDSKADITLSCAPVDESRASEYGLVNIDRS 261
Query: 183 GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP 242
GRV+ FSEKP G DLK+M DTT+ GLS QEA + PYIASMGVY FK E LL LL WR+P
Sbjct: 262 GRVVHFSEKPTGIDLKSMQTDTTMHGLSHQEAAKSPYIASMGVYCFKTEALLKLLTWRYP 321
Query: 243 TANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPI 302
++NDFGSEIIPA+ + ++ Y++ DYWEDIGTI+SF+EAN+AL P F FYD P
Sbjct: 322 SSNDFGSEIIPAAIKDHNVQGYIYRDYWEDIGTIKSFYEANIALVEEHPKFEFYDQNTPF 381
Query: 303 YTSRRNLPPXXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADF 362
YTS R LPP HG F+ I+ S++G RSR++ V L+DT+MLGAD
Sbjct: 382 YTSPRFLPPTKTEKCRIVNSVISHGCFLGECSIQRSIIGERSRLDYGVELQDTLMLGADS 441
Query: 363 YETDAEVASLLAEGRVPVGIGENTKIK 389
Y+T++E+ASLLAEG VP+GIG +TKI+
Sbjct: 442 YQTESEIASLLAEGNVPIGIGRDTKIR 468
|
|
| TAIR|locus:2049364 APL4 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1313 (467.3 bits), Expect = 5.4e-134, P = 5.4e-134
Identities = 242/387 (62%), Positives = 307/387 (79%)
Query: 3 KRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILT 62
K D + VAA+ILGGG G +L+PLT + A PAVP+GG YRLID+PMSNCINS INK+++LT
Sbjct: 85 KVDPQNVAAIILGGGNGAKLFPLTMRAATPAVPVGGCYRLIDIPMSNCINSCINKIFVLT 144
Query: 63 QYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFE 122
Q+NSASLNRHLAR Y +G+G+ FG G VEVLAATQTPGEAGK+WFQGTADAVR+F W+FE
Sbjct: 145 QFNSASLNRHLARTY-FGNGINFGGGFVEVLAATQTPGEAGKKWFQGTADAVRKFLWVFE 203
Query: 123 DPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNE 182
D +N+ IE++LILSGDHLYRM+YMDFVQ+H S ADIT+SC P+ +SRAS+FGL+KI+
Sbjct: 204 DAKNRNIENILILSGDHLYRMNYMDFVQSHVDSNADITLSCAPVSESRASNFGLVKIDRG 263
Query: 183 GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP 242
GRV+ FSEKP G DLK+M DTT+LGLS QEA + PYIASMGVY FK E LLNLL ++P
Sbjct: 264 GRVIHFSEKPTGVDLKSMQTDTTMLGLSHQEATDSPYIASMGVYCFKTEALLNLLTRQYP 323
Query: 243 TANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPI 302
++NDFGSE+IPA+ + ++ Y+F DYWEDIGTI++F+EANLAL P F FYD P
Sbjct: 324 SSNDFGSEVIPAAIRDHDVQGYIFRDYWEDIGTIKTFYEANLALVEERPKFEFYDPETPF 383
Query: 303 YTSRRNLPPXXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADF 362
YTS R LPP HG F+ ++ S++G RSR++ V L+DT+MLGAD+
Sbjct: 384 YTSPRFLPPTKAEKCRMVDSIISHGCFLRECSVQRSIIGERSRLDYGVELQDTLMLGADY 443
Query: 363 YETDAEVASLLAEGRVPVGIGENTKIK 389
Y+T++E+ASLLAEG+VP+GIG++TKI+
Sbjct: 444 YQTESEIASLLAEGKVPIGIGKDTKIR 470
|
|
| TAIR|locus:2156263 ADG1 "ADP glucose pyrophosphorylase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1130 (402.8 bits), Expect = 1.3e-114, P = 1.3e-114
Identities = 218/384 (56%), Positives = 286/384 (74%)
Query: 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSA 67
+V +ILGGGAGTRLYPLTK+RAKPAVP+G YRLID+P+SNC+NS I+K+Y+LTQ+NSA
Sbjct: 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSA 148
Query: 68 SLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNK 127
SLNRHL+RAY G +G VEVLAA Q+P WFQGTADAVRQ+ WLFE+ +
Sbjct: 149 SLNRHLSRAYASNMGGYKNEGFVEVLAAQQSP--ENPNWFQGTADAVRQYLWLFEE--HN 204
Query: 128 VIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLS 187
V+E LIL+GDHLYRMDY F+Q HR++ ADIT++ LPMD+ RA+ FGLMKI+ EGR++
Sbjct: 205 VLE-YLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEQRATAFGLMKIDEEGRIIE 263
Query: 188 FSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDF 247
F+EKPKG+ LKAM VDTT+LGL Q A+E P+IASMG+Y+ ++++L+LLR +FP ANDF
Sbjct: 264 FAEKPKGEHLKAMKVDTTILGLDDQRAKEMPFIASMGIYVVSRDVMLDLLRNQFPGANDF 323
Query: 248 GSEIIPASANEQF-LKAYLFNDYWEDIGTIRSFFEANLALTAHP-PMFSFYDATKPIYTS 305
GSE+IP + + ++AYL++ YWEDIGTI +F+ ANL +T P P FSFYD + PIYT
Sbjct: 324 GSEVIPGATSLGLRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQ 383
Query: 306 RRNLPPXXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYET 365
R LPP G I + I HSVVG+RS I+ ++D++++GAD+YET
Sbjct: 384 PRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYET 443
Query: 366 DAEVASLLAEGRVPVGIGENTKIK 389
E + L A+G VP+GIG+N+ IK
Sbjct: 444 ATEKSLLSAKGSVPIGIGKNSHIK 467
|
|
| UNIPROTKB|P15280 AGPS "Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1127 (401.8 bits), Expect = 2.8e-114, P = 2.8e-114
Identities = 219/388 (56%), Positives = 285/388 (73%)
Query: 5 DART-VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQ 63
DA T V +ILGGGAGTRLYPLTK+RAKPAVP+G YRLID+P+SNC+NS I+K+Y+LTQ
Sbjct: 79 DASTSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQ 138
Query: 64 YNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFED 123
+NSASLNRHL+RAY G +G VEVLAA Q+P WFQGTADAVRQ+ WLFE+
Sbjct: 139 FNSASLNRHLSRAYGNNIGGYKNEGFVEVLAAQQSPDNPN--WFQGTADAVRQYLWLFEE 196
Query: 124 PRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEG 183
+ V+E LIL+GDHLYRMDY F+Q HR++ +DIT++ LPMD+ RA+ FGLMKI+ EG
Sbjct: 197 --HNVME-FLILAGDHLYRMDYEKFIQAHRETDSDITVAALPMDEKRATAFGLMKIDEEG 253
Query: 184 RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243
R++ F+EKPKG+ LKAM VDTT+LGL A+E PYIASMG+Y+ K ++L LLR +FP
Sbjct: 254 RIVEFAEKPKGEQLKAMMVDTTILGLDDVRAKEMPYIASMGIYVISKNVMLQLLREQFPG 313
Query: 244 ANDFGSEIIPASANEQF-LKAYLFNDYWEDIGTIRSFFEANLALTAHP-PMFSFYDATKP 301
ANDFGSE+IP + N ++AYL++ YWEDIGTI +F+ ANL +T P P FSFYD + P
Sbjct: 314 ANDFGSEVIPGATNIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAP 373
Query: 302 IYTSRRNLPPXXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGAD 361
IYT R+LPP G I + I HSVVG+RS I+ ++D++++GAD
Sbjct: 374 IYTQPRHLPPSKVLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGAD 433
Query: 362 FYETDAEVASLLAEGRVPVGIGENTKIK 389
+YET+A+ L +G +P+GIG+N I+
Sbjct: 434 YYETEADKKLLGEKGGIPIGIGKNCHIR 461
|
|
| TAIR|locus:2032003 APS2 "AT1G05610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 671 (241.3 bits), Expect = 5.8e-66, P = 5.8e-66
Identities = 151/388 (38%), Positives = 231/388 (59%)
Query: 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNS 66
++VAA++ GGG+ + LYPLTK R+K A+PI YRLID +SNCINSGI K+Y +TQ+NS
Sbjct: 53 QSVAAIVFGGGSDSELYPLTKTRSKGAIPIAANYRLIDAVISNCINSGITKIYAITQFNS 112
Query: 67 ASLNRHLARAYNYGSGVTFG-DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFED-P 124
SLN HL++AY SG G D VEV+AA Q+ + G WFQGTADA+R+ W+FE+ P
Sbjct: 113 TSLNSHLSKAY---SGFGLGKDRFVEVIAAYQSLEDQG--WFQGTADAIRRCLWVFEEFP 167
Query: 125 RNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGR 184
+ + L+L G HLY+MDY +++HR+S ADITI L FG M++++
Sbjct: 168 ----VTEFLVLPGHHLYKMDYKMLIEDHRRSRADITIVGLSSVTDHDFGFGFMEVDSTNA 223
Query: 185 VLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA 244
V F+ K + +DL ++A T ++ + + S G+Y+ +E ++ LLR +
Sbjct: 224 VTRFTIKGQ-QDLISVANRTA----TRSDGTSSCSVPSAGIYVIGREQMVKLLRECLIKS 278
Query: 245 NDFGSEIIPASANEQF-LKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIY 303
D SEIIP + +E +KA++F+ YWED+ +I +++ AN+ + FYD P+Y
Sbjct: 279 KDLASEIIPGAISEGMKVKAHMFDGYWEDVRSIGAYYRANMESIKS---YRFYDRQCPLY 335
Query: 304 TSRRNLPPXXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFY 363
T R LPP G + I SVVG+R+RI V ++D++++G+D Y
Sbjct: 336 TMPRCLPPSSMSVAVITNSIIGDGCILDKCVIRGSVVGMRTRIADEVIVEDSIIVGSDIY 395
Query: 364 ETDAEVASLLAEGRVPV--GIGENTKIK 389
E + +V E ++ + GIGE ++I+
Sbjct: 396 EMEEDVRRKGKEKKIEIRIGIGEKSRIR 423
|
|
| TIGR_CMR|SO_1498 SO_1498 "glucose-1-phosphate adenylyltransferase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
Identities = 123/314 (39%), Positives = 180/314 (57%)
Query: 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNS 66
R A+IL GG G+RL+ LT RAKPA+ GG +R+ID P+SNCINSGI +V ++TQY S
Sbjct: 12 RETYALILAGGRGSRLHELTDWRAKPALYFGGKFRIIDFPLSNCINSGIRRVGVVTQYKS 71
Query: 67 ASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRN 126
SL RH+ R + + G+ VE+L A+Q E W+QGTADAV Q + R+
Sbjct: 72 HSLIRHVMRGWGHFKK-ELGES-VEILPASQRYSE---NWYQGTADAVFQN---IDIIRH 123
Query: 127 KVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASD-FGLMKINNEGRV 185
++ + V++LSGDH+YRMDY + H +SGAD+T+SCL + + A+ FG+M+++++ R+
Sbjct: 124 ELPKYVMVLSGDHVYRMDYAGLLAAHAESGADMTVSCLEVPVAEAAGAFGVMEVDDDMRI 183
Query: 186 LSFSEKPK------GKDLKAMA-VDTTVLGLSKQ-EAEEKPYIASMGVYLFKKEILLNLL 237
L F EKP+ G K +A + V E +K + F K+I+ +++
Sbjct: 184 LGFEEKPQLPKHCPGNPEKCLASMGNYVFNTEFLFEQLKKDAQNAESDRDFGKDIIPSII 243
Query: 238 RWRFPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYD 297
A F S A NEQ YW D+GT+ SF+ AN+ L + P + YD
Sbjct: 244 EKHKVFAYPFKS----AFPNEQA--------YWRDVGTLDSFWLANMELLSPTPALNLYD 291
Query: 298 ATKPIYTSRRNLPP 311
A PI+T + LPP
Sbjct: 292 AKWPIWTYQEQLPP 305
|
|
| UNIPROTKB|Q9KRB5 glgC1 "Glucose-1-phosphate adenylyltransferase 1" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
Identities = 124/367 (33%), Positives = 196/367 (53%)
Query: 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSAS 68
V +IL GG G+RL PLT+ R KPAVP GG+YRLID ++N +N+ + ++Y+LTQ+ S S
Sbjct: 4 VLGMILAGGEGSRLKPLTETRTKPAVPFGGSYRLIDFALNNFVNADLMRIYVLTQFKSQS 63
Query: 69 LNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKV 128
L H+ + +N SG+T D ++++ A G KRW++GTADA+ Q + F + V
Sbjct: 64 LYIHMKKGWNL-SGIT--DRFIDIIPAQMRDG---KRWYEGTADAIYQ-NLRFVEI---V 113
Query: 129 IED-VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLS 187
D V I DH+Y+MD + HR+ A++T+S L M S+AS FG+++++ G+++
Sbjct: 114 APDQVCIFGSDHIYKMDIRQMLDFHRRMEAELTVSALRMPISQASQFGVIEVDENGKMVG 173
Query: 188 FSEKPKG-KDLKAMAVDTTV-LG--------LSKQEAEEKPYIASMGVYLFKKEILLNLL 237
F EKP K + V +G LSK+ E+ S + F K+I+ +
Sbjct: 174 FEEKPSNPKSIPGEPEWALVSMGNYIFEAETLSKELREDAENNQSS--HDFGKDIIPKM- 230
Query: 238 RWRFPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYD 297
FP + + + N+ +K + YW D+GTI S++ A++ L P FS Y+
Sbjct: 231 ---FPRGKVY---VYDFTTNK--IKGEKESTYWRDVGTIESYWSAHMDLLDKDPEFSLYN 282
Query: 298 ATKPIYTSRRNLPPXXXXXXXX-----XXXXXXHGSFITSSFIEHSVVGIRSRINANVHL 352
+ P++T LPP GS+I S I SV+G RS I A +
Sbjct: 283 RSWPLHTYYPPLPPATFVDVKDKKVKITDSLISGGSYIQGSTIYKSVLGFRSNIAAGSFI 342
Query: 353 KDTMMLG 359
++++LG
Sbjct: 343 SESVILG 349
|
|
| TIGR_CMR|VC_1727 VC_1727 "glucose-1-phosphate adenylyltransferase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
Identities = 124/367 (33%), Positives = 196/367 (53%)
Query: 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSAS 68
V +IL GG G+RL PLT+ R KPAVP GG+YRLID ++N +N+ + ++Y+LTQ+ S S
Sbjct: 4 VLGMILAGGEGSRLKPLTETRTKPAVPFGGSYRLIDFALNNFVNADLMRIYVLTQFKSQS 63
Query: 69 LNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKV 128
L H+ + +N SG+T D ++++ A G KRW++GTADA+ Q + F + V
Sbjct: 64 LYIHMKKGWNL-SGIT--DRFIDIIPAQMRDG---KRWYEGTADAIYQ-NLRFVEI---V 113
Query: 129 IED-VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLS 187
D V I DH+Y+MD + HR+ A++T+S L M S+AS FG+++++ G+++
Sbjct: 114 APDQVCIFGSDHIYKMDIRQMLDFHRRMEAELTVSALRMPISQASQFGVIEVDENGKMVG 173
Query: 188 FSEKPKG-KDLKAMAVDTTV-LG--------LSKQEAEEKPYIASMGVYLFKKEILLNLL 237
F EKP K + V +G LSK+ E+ S + F K+I+ +
Sbjct: 174 FEEKPSNPKSIPGEPEWALVSMGNYIFEAETLSKELREDAENNQSS--HDFGKDIIPKM- 230
Query: 238 RWRFPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYD 297
FP + + + N+ +K + YW D+GTI S++ A++ L P FS Y+
Sbjct: 231 ---FPRGKVY---VYDFTTNK--IKGEKESTYWRDVGTIESYWSAHMDLLDKDPEFSLYN 282
Query: 298 ATKPIYTSRRNLPPXXXXXXXX-----XXXXXXHGSFITSSFIEHSVVGIRSRINANVHL 352
+ P++T LPP GS+I S I SV+G RS I A +
Sbjct: 283 RSWPLHTYYPPLPPATFVDVKDKKVKITDSLISGGSYIQGSTIYKSVLGFRSNIAAGSFI 342
Query: 353 KDTMMLG 359
++++LG
Sbjct: 343 SESVILG 349
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| B2IUY3 | GLGC_NOSP7 | 2, ., 7, ., 7, ., 2, 7 | 0.5833 | 0.9012 | 0.8717 | yes | no |
| Q1ISX7 | GLGC_KORVE | 2, ., 7, ., 7, ., 2, 7 | 0.3496 | 0.8433 | 0.8393 | yes | no |
| Q00081 | GLGL1_SOLTU | 2, ., 7, ., 7, ., 2, 7 | 0.6700 | 0.9349 | 0.8255 | N/A | no |
| P55229 | GLGL1_ARATH | 2, ., 7, ., 7, ., 2, 7 | 0.8479 | 0.9325 | 0.7413 | yes | no |
| B8HM61 | GLGC_CYAP4 | 2, ., 7, ., 7, ., 2, 7 | 0.5651 | 0.9012 | 0.8717 | yes | no |
| B1XLF1 | GLGC_SYNP2 | 2, ., 7, ., 7, ., 2, 7 | 0.5660 | 0.8698 | 0.8414 | yes | no |
| P55243 | GLGL3_SOLTU | 2, ., 7, ., 7, ., 2, 7 | 0.8406 | 0.9349 | 0.8033 | N/A | no |
| P52415 | GLGC_SYNY3 | 2, ., 7, ., 7, ., 2, 7 | 0.5859 | 0.9012 | 0.8519 | N/A | no |
| Q3MBJ4 | GLGC_ANAVT | 2, ., 7, ., 7, ., 2, 7 | 0.5729 | 0.9012 | 0.8717 | yes | no |
| A5GLA9 | GLGC_SYNPW | 2, ., 7, ., 7, ., 2, 7 | 0.5688 | 0.9036 | 0.8700 | yes | no |
| Q5N3K9 | GLGC_SYNP6 | 2, ., 7, ., 7, ., 2, 7 | 0.5736 | 0.9277 | 0.8953 | yes | no |
| B7KDB8 | GLGC_CYAP7 | 2, ., 7, ., 7, ., 2, 7 | 0.5651 | 0.9012 | 0.8717 | yes | no |
| P30521 | GLGC_NOSS1 | 2, ., 7, ., 7, ., 2, 7 | 0.5755 | 0.9012 | 0.8717 | yes | no |
| B7K5U7 | GLGC_CYAP8 | 2, ., 7, ., 7, ., 2, 7 | 0.5937 | 0.9012 | 0.8717 | yes | no |
| Q31QN4 | GLGC_SYNE7 | 2, ., 7, ., 7, ., 2, 7 | 0.5736 | 0.9277 | 0.8953 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GSVIVG00019926001 | RecName- Full=Glucose-1-phosphate adenylyltransferase; EC=2.7.7.27;; This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP- glucose from Glc-1-P and ATP (By similarity) (520 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| GSVIVG00020983001 | SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (507 aa) | • | • | • | • | 0.962 | |||||
| GSVIVG00037251001 | SubName- Full=Chromosome chr16 scaffold_86, whole genome shotgun sequence; (552 aa) | • | • | • | • | 0.960 | |||||
| GSVIVG00017037001 | SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (501 aa) | • | • | • | • | 0.956 | |||||
| GSVIVG00024166001 | RecName- Full=Phosphorylase; EC=2.4.1.1;; Phosphorylase is an important allosteric enzyme in ca [...] (842 aa) | • | • | • | 0.930 | ||||||
| GSVIVG00021049001 | RecName- Full=Phosphorylase; EC=2.4.1.1;; Phosphorylase is an important allosteric enzyme in ca [...] (760 aa) | • | • | • | 0.930 | ||||||
| GSVIVG00003051001 | RecName- Full=Phosphorylase; EC=2.4.1.1;; Phosphorylase is an important allosteric enzyme in ca [...] (814 aa) | • | • | • | 0.928 | ||||||
| GSVIVG00010600001 | SubName- Full=Chromosome chr16 scaffold_271, whole genome shotgun sequence; (621 aa) | • | • | • | 0.923 | ||||||
| GSVIVG00030550001 | SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (581 aa) | • | • | • | 0.923 | ||||||
| GSVIVG00034877001 | SubName- Full=Chromosome chr4 scaffold_73, whole genome shotgun sequence; (465 aa) | • | • | 0.911 | |||||||
| GSVIVG00038116001 | SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (543 aa) | • | 0.800 | ||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 415 | |||
| PLN02241 | 436 | PLN02241, PLN02241, glucose-1-phosphate adenylyltr | 0.0 | |
| PRK02862 | 429 | PRK02862, glgC, glucose-1-phosphate adenylyltransf | 0.0 | |
| TIGR02091 | 361 | TIGR02091, glgC, glucose-1-phosphate adenylyltrans | 1e-158 | |
| COG0448 | 393 | COG0448, GlgC, ADP-glucose pyrophosphorylase [Carb | 1e-132 | |
| PRK00725 | 425 | PRK00725, glgC, glucose-1-phosphate adenylyltransf | 1e-100 | |
| PRK00844 | 407 | PRK00844, glgC, glucose-1-phosphate adenylyltransf | 5e-97 | |
| PRK05293 | 380 | PRK05293, glgC, glucose-1-phosphate adenylyltransf | 5e-92 | |
| pfam00483 | 247 | pfam00483, NTP_transferase, Nucleotidyl transferas | 3e-88 | |
| cd02508 | 200 | cd02508, ADP_Glucose_PP, ADP-glucose pyrophosphory | 5e-76 | |
| cd04181 | 217 | cd04181, NTP_transferase, NTP_transferases catalyz | 4e-44 | |
| COG1208 | 358 | COG1208, GCD1, Nucleoside-diphosphate-sugar pyroph | 1e-40 | |
| cd06915 | 223 | cd06915, NTP_transferase_WcbM_like, WcbM_like is a | 7e-26 | |
| TIGR02092 | 369 | TIGR02092, glgD, glucose-1-phosphate adenylyltrans | 2e-25 | |
| COG1209 | 286 | COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cel | 5e-20 | |
| cd06426 | 220 | cd06426, NTP_transferase_like_2, NTP_trnasferase_l | 1e-17 | |
| cd04189 | 236 | cd04189, G1P_TT_long, G1P_TT_long represents the l | 1e-17 | |
| TIGR03992 | 393 | TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diph | 6e-16 | |
| cd04651 | 104 | cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenyly | 2e-13 | |
| TIGR01208 | 353 | TIGR01208, rmlA_long, glucose-1-phosphate thymidyl | 5e-11 | |
| cd04198 | 214 | cd04198, eIF-2B_gamma_N, The N-terminal domain of | 8e-11 | |
| cd02538 | 240 | cd02538, G1P_TT_short, G1P_TT_short is the short f | 2e-10 | |
| cd06425 | 233 | cd06425, M1P_guanylylT_B_like_N, N-terminal domain | 2e-09 | |
| cd02507 | 216 | cd02507, eIF-2B_gamma_N_like, The N-terminal of eI | 3e-09 | |
| cd06422 | 221 | cd06422, NTP_transferase_like_1, NTP_transferase_l | 3e-08 | |
| TIGR02623 | 254 | TIGR02623, G1P_cyt_trans, glucose-1-phosphate cyti | 2e-07 | |
| cd06428 | 257 | cd06428, M1P_guanylylT_A_like_N, N-terminal domain | 2e-07 | |
| cd02523 | 229 | cd02523, PC_cytidylyltransferase, Phosphocholine c | 4e-07 | |
| TIGR01207 | 286 | TIGR01207, rmlA, glucose-1-phosphate thymidylyltra | 6e-06 | |
| cd02540 | 229 | cd02540, GT2_GlmU_N_bac, N-terminal domain of bact | 1e-05 | |
| cd02541 | 267 | cd02541, UGPase_prokaryotic, Prokaryotic UGPase ca | 1e-04 | |
| PRK15480 | 292 | PRK15480, PRK15480, glucose-1-phosphate thymidylyl | 3e-04 | |
| PRK14354 | 458 | PRK14354, glmU, bifunctional N-acetylglucosamine-1 | 8e-04 | |
| COG1207 | 460 | COG1207, GlmU, N-acetylglucosamine-1-phosphate uri | 0.002 | |
| PRK13389 | 302 | PRK13389, PRK13389, UTP--glucose-1-phosphate uridy | 0.002 | |
| PRK14359 | 430 | PRK14359, glmU, bifunctional N-acetylglucosamine-1 | 0.003 | |
| cd02524 | 253 | cd02524, G1P_cytidylyltransferase, G1P_cytidylyltr | 0.004 |
| >gnl|CDD|215133 PLN02241, PLN02241, glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Score = 776 bits (2006), Expect = 0.0
Identities = 290/385 (75%), Positives = 341/385 (88%), Gaps = 3/385 (0%)
Query: 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYN 65
++VAA+ILGGGAGTRL+PLTK+RAKPAVPIGG YRLID+PMSNCINSGINK+Y+LTQ+N
Sbjct: 1 PKSVAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFN 60
Query: 66 SASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPR 125
SASLNRHL+RAYN+G+G FGDG VEVLAATQTPGE G WFQGTADAVRQF WLFED +
Sbjct: 61 SASLNRHLSRAYNFGNGGNFGDGFVEVLAATQTPGEKG--WFQGTADAVRQFLWLFEDAK 118
Query: 126 NKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRV 185
NK +E+VLILSGDHLYRMDYMDFVQ HR+SGADITI+CLP+D+SRASDFGLMKI++ GR+
Sbjct: 119 NKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLPVDESRASDFGLMKIDDTGRI 178
Query: 186 LSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAN 245
+ FSEKPKG +LKAM VDTTVLGLS +EA+EKPYIASMG+Y+FKK++LL LLRWRFPTAN
Sbjct: 179 IEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTAN 238
Query: 246 DFGSEIIPASANEQF-LKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYT 304
DFGSEIIP + E + ++AYLF+ YWEDIGTI+SF+EANLALT PP FSFYD PIYT
Sbjct: 239 DFGSEIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYEANLALTKQPPKFSFYDPDAPIYT 298
Query: 305 SRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYE 364
S R LPPSKI+D +I DSIISHG F+ IEHSVVG+RSRI V ++DT+M+GAD+YE
Sbjct: 299 SPRFLPPSKIEDCRITDSIISHGCFLRECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYE 358
Query: 365 TDAEVASLLAEGRVPVGIGENTKIK 389
T+ E+ASLLAEG+VP+GIGENTKI+
Sbjct: 359 TEEEIASLLAEGKVPIGIGENTKIR 383
|
Length = 436 |
| >gnl|CDD|179486 PRK02862, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 623 bits (1610), Expect = 0.0
Identities = 226/384 (58%), Positives = 291/384 (75%), Gaps = 10/384 (2%)
Query: 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNS 66
+ V A+ILGGGAGTRLYPLTK RAKPAVP+ G YRLID+P+SNCINSGINK+Y+LTQ+NS
Sbjct: 2 KRVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNS 61
Query: 67 ASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRN 126
ASLNRH+++ YN+ F G VEVLAA QTP WFQGTADAVR++ W F++
Sbjct: 62 ASLNRHISQTYNFDG---FSGGFVEVLAAQQTP--ENPSWFQGTADAVRKYLWHFQEWD- 115
Query: 127 KVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVL 186
+++ LILSGD LYRMDY FVQ+HR++GADIT++ LP+D+ AS FGLMK +++GR+
Sbjct: 116 --VDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPVDEKDASGFGLMKTDDDGRIT 173
Query: 187 SFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAND 246
FSEKPKG +LKAMAVDT+ LGLS +EA+ KPY+ASMG+Y+F +++L +LL + P D
Sbjct: 174 EFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLN-KNPEYTD 232
Query: 247 FGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHP-PMFSFYDATKPIYTS 305
FG EIIP + + +++YLF+ YWEDIGTI +F+EANLALT P P FSFYD PIYT
Sbjct: 233 FGKEIIPEAIRDYKVQSYLFDGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTR 292
Query: 306 RRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYET 365
R LPPSK+ D+ I +SII+ G I + I HSV+GIRSRI + ++DT+++GADFYE+
Sbjct: 293 ARYLPPSKLLDATITESIIAEGCIIKNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYES 352
Query: 366 DAEVASLLAEGRVPVGIGENTKIK 389
E L EG+ P+GIGE T IK
Sbjct: 353 SEEREELRKEGKPPLGIGEGTTIK 376
|
Length = 429 |
| >gnl|CDD|233720 TIGR02091, glgC, glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Score = 450 bits (1160), Expect = e-158
Identities = 167/385 (43%), Positives = 233/385 (60%), Gaps = 48/385 (12%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
A++L GG G+RL PLTK+RAKPAVP GG YR+ID P+SNCINSGI ++ +LTQY S SLN
Sbjct: 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHSLN 60
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIE 130
RH+ R +++ F DG V +L A Q E+G W+QGTADAV Q L ED E
Sbjct: 61 RHIQRGWDFD---GFIDGFVTLLPAQQR--ESGTDWYQGTADAVYQNLDLIEDYD---PE 112
Query: 131 DVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSE 190
VLILSGDH+Y+MDY + H +SGAD+TI+C+P+ AS FG+M+++ +GR++ F E
Sbjct: 113 YVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQVDEDGRIVDFEE 172
Query: 191 KP-KGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR---FPTAND 246
KP + M +ASMG+Y+F K++L LL +++D
Sbjct: 173 KPANPPSIPGM---------------PDFALASMGIYIFDKDVLKELLEEDADDPESSHD 217
Query: 247 FGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSR 306
FG +IIP + E ++AYLF+ YW D+GTI SF+EAN+ L + P F YD PIYT
Sbjct: 218 FGKDIIPRALEEGSVQAYLFSGYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYN 277
Query: 307 RNLPPSKIDDS--KIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYE 364
LPP+K DS ++VDS++S G I+ + + HSV+GIR RI + ++D++++G
Sbjct: 278 EFLPPAKFVDSDAQVVDSLVSEGCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGD---- 333
Query: 365 TDAEVASLLAEGRVPVGIGENTKIK 389
VGIG I+
Sbjct: 334 ---------------VGIGRGAVIR 343
|
This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 361 |
| >gnl|CDD|223525 COG0448, GlgC, ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 384 bits (989), Expect = e-132
Identities = 144/389 (37%), Positives = 217/389 (55%), Gaps = 50/389 (12%)
Query: 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYN 65
+ V A+IL GG G+RL PLTK RAKPAVP GG YR+ID +SNC+NSGI ++ +LTQY
Sbjct: 3 KKNVLAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYK 62
Query: 66 SASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPR 125
S SLN H+ R + + +G V +L A Q G G+RW++GTADA+ Q +
Sbjct: 63 SHSLNDHIGRGWPWDLDRK--NGGVFILPAQQREG--GERWYEGTADAIYQNLLIIRRSD 118
Query: 126 NKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRV 185
E VLILSGDH+Y+MDY D + H +SGAD+T++ + AS FG+M ++ GR+
Sbjct: 119 ---PEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKEVPREEASRFGVMNVDENGRI 175
Query: 186 LSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRW---RFP 242
+ F EKP + +ASMG+Y+F ++L LL
Sbjct: 176 IEFVEKPADGP-----PSNS--------------LASMGIYIFNTDLLKELLEEDAKDPN 216
Query: 243 TANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPI 302
+++DFG +IIP + AY F+ YW D+GTI S++EAN+ L + P + YD PI
Sbjct: 217 SSHDFGKDIIPKLLERGKVYAYEFSGYWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPI 276
Query: 303 YTSRRNLPPSKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGAD 361
YT +NLPP+K +DS++ +S+++ G I+ + +E+SV+ RI +++++++
Sbjct: 277 YTKNKNLPPAKFVNDSEVSNSLVAGGCIISGT-VENSVLFRGVRIGKGSVIENSVIMPD- 334
Query: 362 FYETDAEVASLLAEGRVPVGIGENTKIKY 390
V IGE ++
Sbjct: 335 ------------------VEIGEGAVLRR 345
|
Length = 393 |
| >gnl|CDD|234824 PRK00725, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 304 bits (781), Expect = e-100
Identities = 136/375 (36%), Positives = 206/375 (54%), Gaps = 45/375 (12%)
Query: 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYN 65
R A+IL GG G+RL LT +RAKPAV GG +R+ID +SNCINSGI ++ +LTQY
Sbjct: 13 TRDTLALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYK 72
Query: 66 SASLNRHLARAYNYGSGVTFGDGCVEVLAATQ-TPGEAGKRWFQGTADAVRQFHWLFEDP 124
+ SL RH+ R +++ G+ V++L A Q E W++GTADAV Q +
Sbjct: 73 AHSLIRHIQRGWSFFRE-ELGEF-VDLLPAQQRVDEEN---WYRGTADAVYQNLDIIRRY 127
Query: 125 RNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGR 184
K V+IL+GDH+Y+MDY + +H +SGAD T++CL + AS FG+M ++ R
Sbjct: 128 DPKY---VVILAGDHIYKMDYSRMLADHVESGADCTVACLEVPREEASAFGVMAVDENDR 184
Query: 185 VLSFSEKPKGKDLKAMAVD-TTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243
+ +F EKP + AM D L ASMG+Y+F + L LL
Sbjct: 185 ITAFVEKP--ANPPAMPGDPDKSL-------------ASMGIYVFNADYLYELLEEDAED 229
Query: 244 AN---DFGSEIIPASANEQFLKAYLFND-----------YWEDIGTIRSFFEANLALTAH 289
N DFG +IIP E + A+ F+D YW D+GT+ ++++ANL L +
Sbjct: 230 PNSSHDFGKDIIPKIVEEGKVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASV 289
Query: 290 PPMFSFYDATKPIYTSRRNLPPSKI----DDSK--IVDSIISHGSFITSSFIEHSVVGIR 343
P YD PI+T + LPP+K + ++S++S G I+ + + SV+ R
Sbjct: 290 TPELDLYDRNWPIWTYQEQLPPAKFVFDRSGRRGMAINSLVSGGCIISGAVVRRSVLFSR 349
Query: 344 SRINANVHLKDTMML 358
R+N+ +++D+++L
Sbjct: 350 VRVNSFSNVEDSVLL 364
|
Length = 425 |
| >gnl|CDD|234846 PRK00844, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 295 bits (758), Expect = 5e-97
Identities = 129/372 (34%), Positives = 202/372 (54%), Gaps = 45/372 (12%)
Query: 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSAS 68
V A++L GG G RL PLT RAKPAVP GG+YRLID +SN +NSG ++Y+LTQY S S
Sbjct: 6 VLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYKSHS 65
Query: 69 LNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKV 128
L+RH+++ + SG+ + + A Q GKRW+ G+ADA+ Q L ED
Sbjct: 66 LDRHISQTWRL-SGLL--GNYITPVPAQQR---LGKRWYLGSADAIYQSLNLIEDEDP-- 117
Query: 129 IEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSF 188
+ V++ DH+YRMD V H +SGA +T++ + + AS FG+++++ +GR+ F
Sbjct: 118 -DYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIRVPREEASAFGVIEVDPDGRIRGF 176
Query: 189 SEKPKGKDLKAMAVD-TTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF---PTA 244
EKP D + D L ASMG Y+F + L++ LR ++
Sbjct: 177 LEKP--ADPPGLPDDPDEAL-------------ASMGNYVFTTDALVDALRRDAADEDSS 221
Query: 245 NDFGSEIIPASANEQFLKAYLFND------------YWEDIGTIRSFFEANLALTAHPPM 292
+D G +IIP Y F+ YW D+GTI ++++A++ L + P+
Sbjct: 222 HDMGGDIIPRLVERGRAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVHPV 281
Query: 293 FSFYDATKPIYTSRRNLPPSKIDDS-----KIVDSIISHGSFITSSFIEHSVVGIRSRIN 347
F+ Y+ PIYTS NLPP+K D DS++S GS I+ + + +SV+ +
Sbjct: 282 FNLYNREWPIYTSSPNLPPAKFVDGGGRVGSAQDSLVSAGSIISGATVRNSVLSPNVVVE 341
Query: 348 ANVHLKDTMMLG 359
+ ++D++++
Sbjct: 342 SGAEVEDSVLMD 353
|
Length = 407 |
| >gnl|CDD|179997 PRK05293, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 281 bits (722), Expect = 5e-92
Identities = 140/393 (35%), Positives = 204/393 (51%), Gaps = 56/393 (14%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
A+IL GG GTRL LTK AKPAVP GG YR+ID +SNC NSGI+ V +LTQY LN
Sbjct: 6 AMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQPLELN 65
Query: 71 RHLARAYNYGSGVTFG----DGCVEVLAATQTPGEAGKRWFQGTADAVRQ-FHWLFE-DP 124
H+ G G + +G V +L G +W++GTA A+ Q ++ + DP
Sbjct: 66 NHI------GIGSPWDLDRINGGVTILPPYS--ESEGGKWYKGTAHAIYQNIDYIDQYDP 117
Query: 125 RNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCL--PMDDSRASDFGLMKINNE 182
E VLILSGDH+Y+MDY + H++ AD+TI+ + P ++ AS FG+M +
Sbjct: 118 -----EYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIEVPWEE--ASRFGIMNTDEN 170
Query: 183 GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP 242
R++ F EKPK K +ASMG+Y+F + L L
Sbjct: 171 MRIVEFEEKPK---------------------NPKSNLASMGIYIFNWKRLKEYLIEDEK 209
Query: 243 TAN---DFGSEIIPASANEQF-LKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDA 298
N DFG +IP E L AY F YW+D+GTI S +EAN+ L + +D
Sbjct: 210 NPNSSHDFGKNVIPLYLEEGEKLYAYPFKGYWKDVGTIESLWEANMELLRPENPLNLFDR 269
Query: 299 TKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTM- 356
IY+ NLPP I +++K+ +S++ G + + +EHSV+ ++ +KD++
Sbjct: 270 NWRIYSVNPNLPPQYIAENAKVKNSLVVEGCVVYGT-VEHSVLFQGVQVGEGSVVKDSVI 328
Query: 357 MLGADFYETDAEVA-SLLAEGRVPVGIGENTKI 388
M GA E + + +++ E V IG+ I
Sbjct: 329 MPGAKIGE-NVVIERAIIGENAV---IGDGVII 357
|
Length = 380 |
| >gnl|CDD|215940 pfam00483, NTP_transferase, Nucleotidyl transferase | Back alignment and domain information |
|---|
Score = 267 bits (685), Expect = 3e-88
Identities = 89/283 (31%), Positives = 131/283 (46%), Gaps = 45/283 (15%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINK-VYILTQYNSASL 69
A+IL GG+GTRL+PLT+ AKP VP+ Y +I +S +N+GI + + I TQ + +
Sbjct: 2 AIILAGGSGTRLWPLTRTLAKPLVPVLDKYPMIQYTLSRLMNAGIREPIVICTQEHRFLV 61
Query: 70 NRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVI 129
L +G ++V A Q GTA AV D +
Sbjct: 62 AEQLGDGSKFG---------LQVTYALQPEPR-------GTAPAVALAADFLGD--DDP- 102
Query: 130 EDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFS 189
E VL+L GDH+YRMD+ + VQ R AD T++ + + +G+++ + GRV+ F
Sbjct: 103 ELVLVLGGDHIYRMDFEEAVQKARAKAADGTVTFGIVPVEDPTGYGVIEFDENGRVIRFV 162
Query: 190 EKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLR--WRFPTANDF 247
EKP + ASMG+Y F + L L + D
Sbjct: 163 EKPDL--------------------PKASNYASMGIYFFNSGVFLFLAKYLKELARGEDE 202
Query: 248 GSEIIPASANEQFLK-AYLFND--YWEDIGTIRSFFEANLALT 287
++ IPA+ + L A+LF YW D+GT S +EANL L
Sbjct: 203 ITDAIPAALEDGDLDLAFLFRGYAYWSDVGTWDSLWEANLKLL 245
|
This family includes a wide range of enzymes which transfer nucleotides onto phosphosugars. Length = 247 |
| >gnl|CDD|133002 cd02508, ADP_Glucose_PP, ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch | Back alignment and domain information |
|---|
Score = 234 bits (599), Expect = 5e-76
Identities = 103/264 (39%), Positives = 129/264 (48%), Gaps = 65/264 (24%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
A+IL GG GTRL PLTK+RAKPAVP GG YRLID P+SN +NSGI V +LTQY S SLN
Sbjct: 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLN 60
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIE 130
HL + G + +L Q G W++GTADA+ Q E E
Sbjct: 61 DHLGSGKEWD-LDRKNGG-LFILPPQQRKGG---DWYRGTADAIYQNLDYIERSDP---E 112
Query: 131 DVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSE 190
VLILSGDH+Y MDY + + H +SGA
Sbjct: 113 YVLILSGDHIYNMDYREMLDFHIESGA--------------------------------- 139
Query: 191 KPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF-PTANDFGS 249
D TV+ Y ASMG+Y+F K++L+ LL ++DFG
Sbjct: 140 ------------DITVV-----------YKASMGIYIFSKDLLIELLEEDAADGSHDFGK 176
Query: 250 EIIPASANEQFLKAYLFNDYWEDI 273
+IIPA + + AY FN YW DI
Sbjct: 177 DIIPAMLKKLKIYAYEFNGYWADI 200
|
ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2. Length = 200 |
| >gnl|CDD|133024 cd04181, NTP_transferase, NTP_transferases catalyze the transfer of nucleotides onto phosphosugars | Back alignment and domain information |
|---|
Score = 152 bits (387), Expect = 4e-44
Identities = 71/264 (26%), Positives = 119/264 (45%), Gaps = 47/264 (17%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
AVIL G GTRL PLT R KP +PI G +++ + +GI+++ ++ Y +
Sbjct: 1 AVILAAGKGTRLRPLTDTRPKPLLPIAG-KPILEYIIERLARAGIDEIILVVGYLGEQIE 59
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIE 130
+ +G + + Q GTA AVR D +
Sbjct: 60 EYFGDGSKFGVNIEY---------VVQEEPL-------GTAGAVRNAEDFLGD------D 97
Query: 131 DVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSE 190
D L+++GD L +D + ++ HR+ GAD TI+ ++D S +G+++++++GRV F E
Sbjct: 98 DFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVED--PSRYGVVELDDDGRVTRFVE 155
Query: 191 KPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSE 250
KP + +A+ G+Y+F+ EI L+ + P D ++
Sbjct: 156 KPT---------------------LPESNLANAGIYIFEPEI-LDYIPEILPRGEDELTD 193
Query: 251 IIPASANEQFLKAYLFNDYWEDIG 274
IP E + Y + YW DIG
Sbjct: 194 AIPLLIEEGKVYGYPVDGYWLDIG 217
|
Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Length = 217 |
| >gnl|CDD|224129 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 1e-40
Identities = 93/376 (24%), Positives = 148/376 (39%), Gaps = 79/376 (21%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
AVIL GG GTRL PLT R KP +PI G LI+ + +G+ ++ ++ Y +
Sbjct: 4 AVILAGGYGTRLRPLTDDRPKPLLPIAG-KPLIEYVLEALAAAGVEEIVLVVGYLGEQIE 62
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQF-HWLFEDPRNKVI 129
+ G +T+ V GTA A++ L
Sbjct: 63 EYFGDGEGLGVRITY----VVEKEPL------------GTAGALKNALDLL-------GG 99
Query: 130 EDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKI-NNEGRVLSF 188
+D L+L+GD L +D + ++ H++ GA TI L S+FG+++ + +GRV+ F
Sbjct: 100 DDFLVLNGDVLTDLDLSELLEFHKKKGALATI-ALTRVLDP-SEFGVVETDDGDGRVVEF 157
Query: 189 SEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFG 248
EKP E + + G+Y+F E+ + DF
Sbjct: 158 REKPG-------------------PEEPPSNLINAGIYIFDPEVFDYI---EKGERFDFE 195
Query: 249 SEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEAN-LALTAHPPMFSFYDAT------- 299
E++PA A + + + Y+F YW DIGT EAN L L
Sbjct: 196 EELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLRGDGKSPLGPIEEPVVIIRS 255
Query: 300 ----KPIYTSRRN--------LPPSKI-------DDSKIVDSIISHGSFITS-SFIEHSV 339
P+ P + I + +I +SII I S+I S+
Sbjct: 256 AYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSI 315
Query: 340 VGIRSRINANVHLKDT 355
+G +I A++ + D
Sbjct: 316 IGENCKIGASLIIGDV 331
|
Length = 358 |
| >gnl|CDD|133065 cd06915, NTP_transferase_WcbM_like, WcbM_like is a subfamily of nucleotidyl transferases | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 7e-26
Identities = 67/273 (24%), Positives = 108/273 (39%), Gaps = 52/273 (19%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
AVIL GG GTRL + K KP P+ G ++ + GI+++ + Y + +
Sbjct: 1 AVILAGGLGTRLRSVVKDLPKPLAPVAG-RPFLEYLLEYLARQGISRIVLSVGYLAEQIE 59
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIE 130
+ Y G P GT A++ K+ E
Sbjct: 60 EYFGDGYR--------GGIRIYYVIEPEP--------LGTGGAIKNA-------LPKLPE 96
Query: 131 D-VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFS 189
D L+L+GD + +D + + R SGAD T++ + D AS +G + ++ +GRV++F
Sbjct: 97 DQFLVLNGDTYFDVDLLALLAALRASGADATMALRRVPD--ASRYGNVTVDGDGRVIAFV 154
Query: 190 EKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGS 249
EK G I GVYL +KEIL + F +
Sbjct: 155 EKGPG--------------------AAPGLING-GVYLLRKEILAEIPADAF----SLEA 189
Query: 250 EIIPASANEQFLKAYLFNDYWEDIGTIRSFFEA 282
+++PA L + + Y+ DIG + A
Sbjct: 190 DVLPALVKRGRLYGFEVDGYFIDIGIPEDYARA 222
|
WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars. Length = 223 |
| >gnl|CDD|233721 TIGR02092, glgD, glucose-1-phosphate adenylyltransferase, GlgD subunit | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 2e-25
Identities = 94/397 (23%), Positives = 172/397 (43%), Gaps = 57/397 (14%)
Query: 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNS 66
++A+I + L PLTK R ++P GG YRLID P+SN +N+GI V+I +
Sbjct: 1 NKMSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKE 60
Query: 67 -ASLNRHLARAYNYGSGV-----TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWL 120
SL HL GSG DG + G + R F
Sbjct: 61 RQSLFDHL------GSGREWDLHRKRDGLFVFPYNDRDDLSEGGK---------RYFSQN 105
Query: 121 FEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN 180
E + E ++L+ + +D ++ H ++G DIT+ + + AS++ +
Sbjct: 106 LEFLKRSTSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKKVKPADASEYDTILRF 165
Query: 181 NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR 240
+E S K G++L + +E E S+ +Y+ ++L+ LL
Sbjct: 166 DE----SGKVKSIGQNL------------NPEEEENI----SLDIYIVSTDLLIELLY-- 203
Query: 241 FPTANDFGSEIIPASANEQFLK-----AYLFNDYWEDIGTIRSFFEANLALTAHPPMFS- 294
G + LK AY + Y +I +++S+++AN+ L P F
Sbjct: 204 --ECIQRGKLTSLEELIRENLKELNINAYEYTGYLANINSVKSYYKANMDLL-DPQNFQS 260
Query: 295 -FYDATKPIYTSRRNLPPSK-IDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHL 352
FY + PIYT ++ PP+ ++SK+ +S++++G I +E+S++ + + +
Sbjct: 261 LFYSSQGPIYTKVKDEPPTYYAENSKVENSLVANGCIIEGK-VENSILSRGVHVGKDALI 319
Query: 353 KDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK 389
K+ +++ A + +++ + V I N KI
Sbjct: 320 KNCIIMQRTVIGEGAHLENVIIDKDVV--IEPNVKIA 354
|
This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 369 |
| >gnl|CDD|224130 COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 5e-20
Identities = 67/287 (23%), Positives = 114/287 (39%), Gaps = 71/287 (24%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
VIL GG+GTRL PLT+ K +P+ +I P+ + +GI + I+
Sbjct: 3 GVILAGGSGTRLRPLTRVVPKQLLPVYD-KPMIYYPLETLMLAGIRDILIVVGPEDKPTF 61
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIE 130
+ L G G FG V++ A Q E G A AV + ED +
Sbjct: 62 KEL-----LGDGSDFG---VDITYAVQ--PEPD-----GLAHAV----LIAEDFVGD--D 100
Query: 131 DVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSE 190
D ++ GD++++ + +++ + G+ TI +DD +G+++ + +G+V+ E
Sbjct: 101 DFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVDDPSR--YGVVEFDEDGKVIGLEE 158
Query: 191 KPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSE 250
KPK E K +A G+Y + + + +
Sbjct: 159 KPK---------------------EPKSNLAVTGLYFYDPSVF------------EAIKQ 185
Query: 251 IIP--------ASANEQFLK------AYLFNDYWEDIGTIRSFFEAN 283
I P A + +++ A L +W D GT S EAN
Sbjct: 186 IKPSARGELEITDAIDLYIEKGYLVVAILIRGWWLDTGTPESLLEAN 232
|
Length = 286 |
| >gnl|CDD|133048 cd06426, NTP_transferase_like_2, NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Score = 80.6 bits (200), Expect = 1e-17
Identities = 61/288 (21%), Positives = 109/288 (37%), Gaps = 83/288 (28%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
VI+ GG GTRL PLT+ KP + +GG +++ + I G YI Y +
Sbjct: 1 VVIMAGGKGTRLRPLTENTPKPMLKVGGK-PILETIIDRFIAQGFRNFYISVNYLA---- 55
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRW-----------FQGTADAVRQFHW 119
+ Y FGD G ++ GTA A+
Sbjct: 56 -EMIEDY-------FGD---------------GSKFGVNISYVREDKPLGTAGALSLL-- 90
Query: 120 LFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASD----FG 175
K + L+++GD L ++Y + H+++ AD T+ R + +G
Sbjct: 91 -----PEKPTDPFLVMNGDILTNLNYEHLLDFHKENNADATVCV------REYEVQVPYG 139
Query: 176 LMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLN 235
+++ GR+ S EKP ++ + G+Y+ + E+L
Sbjct: 140 VVETEG-GRITSIEEKPTHS-----------------------FLVNAGIYVLEPEVLDL 175
Query: 236 LLRWRFPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEAN 283
+ + F D ++I + + + ++YW DIG + +AN
Sbjct: 176 IPKNEFFDMPDLIEKLI---KEGKKVGVFPIHEYWLDIGRPEDYEKAN 220
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. Length = 220 |
| >gnl|CDD|133032 cd04189, G1P_TT_long, G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 1e-17
Identities = 67/288 (23%), Positives = 107/288 (37%), Gaps = 75/288 (26%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
+IL GG GTRL PLT R K +P+ G +I + + +GI + I+ +
Sbjct: 3 GLILAGGKGTRLRPLTYTRPKQLIPVAGK-PIIQYAIEDLREAGIEDIGIVVGPTGEEIK 61
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAV-RQFHWLFEDPRNKVI 129
L +G +T+ + G A AV +L ++P
Sbjct: 62 EALGDGSRFGVRITYI--------------LQEEP--LGLAHAVLAARDFLGDEPF---- 101
Query: 130 EDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFS 189
V+ L GD+L + V++ + AD +I ++D R FG+ +++ GR++
Sbjct: 102 --VVYL-GDNLIQEGISPLVRDFLEEDADASILLAEVEDPRR--FGVAVVDD-GRIVRLV 155
Query: 190 EKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGS 249
EKPK E +A +GVY F I D S
Sbjct: 156 EKPK---------------------EPPSNLALVGVYAFTPAIF------------DAIS 182
Query: 250 EIIPASANE-------QFL-------KAYLFNDYWEDIGTIRSFFEAN 283
+ P+ E Q+L + +W+D GT EAN
Sbjct: 183 RLKPSWRGELEITDAIQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEAN 230
|
This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. Length = 236 |
| >gnl|CDD|234433 TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 6e-16
Identities = 66/280 (23%), Positives = 113/280 (40%), Gaps = 59/280 (21%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
AVIL G GTR+ PLT+ R KP +P+ G L++ + ++GI+ + Y +
Sbjct: 3 AVILAAGKGTRMRPLTETRPKPMLPVAGK-PLLEHIIEALRDAGIDDFVFVVGYGKEKVR 61
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIE 130
+ G + + Q GTADA+ + V +
Sbjct: 62 EYFGDGSRGGVPIEY---------VVQEEQL-------GTADALGS-------AKEYVDD 98
Query: 131 DVLILSGDHLYRMDYMDFVQNHRQSGADIT-ISCLPMDDSRASDFGLMKINNEGRVLSFS 189
+ L+L+GD L D ++ R A+ I+ + +DD SD+G+++ + GRV
Sbjct: 99 EFLVLNGDVLLDSDLLE-----RLIRAEAPAIAVVEVDD--PSDYGVVETDG-GRVTGIV 150
Query: 190 EKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGS 249
EKP + + G+YLF EI L + + ++
Sbjct: 151 EKP---------------------ENPPSNLINAGIYLFSPEIFELLEKTKLSPRGEY-- 187
Query: 250 EI---IPASANEQFLKAYLFNDYWEDIGTIRSFFEANLAL 286
E+ + +E +KA + +W D+G +AN AL
Sbjct: 188 ELTDALQLLIDEGKVKAVELDGFWLDVGRPWDLLDANEAL 227
|
The MJ_1101 protein from Methanococcus jannaschii has been characterized as the GlmU enzyme catalyzing the final two steps of UDP-GlcNAc biosynthesis. Many of the genes identified by this model are in proximity to the GlmS and GlmM genes and are also presumed to be GlmU. However, some archaeal genomes contain multiple closely-related homologs from this family and it is not clear what the substrate specificity is for each of them. Length = 393 |
| >gnl|CDD|100056 cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase | Back alignment and domain information |
|---|
Score = 65.6 bits (161), Expect = 2e-13
Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 19/81 (23%)
Query: 310 PPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEV 369
PP ++ +S++S G I+ +E+SV+ R+ + ++D++++
Sbjct: 1 PPYIGRRGEVKNSLVSEGCIISGGTVENSVLFRGVRVGSGSVVEDSVIMPN--------- 51
Query: 370 ASLLAEGRVPVGIGENTKIKY 390
VGIG N I+
Sbjct: 52 ----------VGIGRNAVIRR 62
|
It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. Length = 104 |
| >gnl|CDD|233311 TIGR01208, rmlA_long, glucose-1-phosphate thymidylylransferase, long form | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 5e-11
Identities = 82/405 (20%), Positives = 147/405 (36%), Gaps = 88/405 (21%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
A+IL G GTRL PLT R K +P+ ++ + + +GI + I+ +
Sbjct: 2 ALILAAGKGTRLRPLTFTRPKQLIPVANK-PILQYAIEDLAEAGITDIGIVVGPVTGEEI 60
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIE 130
+ + G G FG ++ Q G+ G A AV D +
Sbjct: 61 KEI-----VGEGERFG---AKITYIVQ-----GEP--LGLAHAVYTARDFLGD------D 99
Query: 131 DVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSE 190
D ++ GD+L + FV++ + D I + D A FG+ + + R+L E
Sbjct: 100 DFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVRDPTA--FGVAVLEDGKRILKLVE 157
Query: 191 KPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSE 250
KPK E +A +G+Y+F+ P +
Sbjct: 158 KPK---------------------EPPSNLAVVGLYMFR------------PLIFEAIKN 184
Query: 251 IIPASANE-------QFL-------KAYLFNDYWEDIGTIRSFFEANLAL--TAHPPMFS 294
I P+ E Q+L +W+D G +AN + +
Sbjct: 185 IKPSWRGELEITDAIQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLILDEVEREVQG 244
Query: 295 FYDATKPIYTSRRNLPP-SKIDDSKIVD-SIISHGSFITSSFIEH-SVVGIRSRINANVH 351
D +K R + +KI +S I ++I I +S+I + +G I +
Sbjct: 245 VDDESK--IRGRVVVGEGAKIVNSVIRGPAVIGEDCIIENSYIGPYTSIGEGVVIR-DAE 301
Query: 352 LKDTMML-GADFYETDAEVASLLAEGRVPVGIGENTKIKYEQLKP 395
++ +++L + A + + IG+ +IK + +P
Sbjct: 302 VEHSIVLDESVIEGVQARIVDSV--------IGKKVRIKGNRRRP 338
|
The family of known and putative glucose-1-phosphate thymidyltransferase (also called dTDP-glucose synthase) shows a deep split into a short form (see TIGR01207) and a long form described by this model. The homotetrameric short form is found in numerous bacterial species that incorporate dTDP-L-rhamnose, which it helps synthesize, into the cell wall. It is subject to feedback inhibition. This form, in contrast, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. Alternate name: dTDP-D-glucose synthase. Length = 353 |
| >gnl|CDD|133041 cd04198, eIF-2B_gamma_N, The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 8e-11
Identities = 50/244 (20%), Positives = 90/244 (36%), Gaps = 53/244 (21%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
AVIL GG G+RLYPLT K +P+ +I P+ +G V ++ +
Sbjct: 3 AVILAGGGGSRLYPLTDNIPKALLPVAN-KPMIWYPLDWLEKAGFEDVIVVVPEEEQAEI 61
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIE 130
R++ EV GTAD++R K+ +
Sbjct: 62 STYLRSFPLNLKQKL----DEVTIVLDED--------MGTADSLRHIR-------KKIKK 102
Query: 131 DVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSE 190
D L+LS D + + ++ V HR A +++ L + S + + S+
Sbjct: 103 DFLVLSCDLITDLPLIELVDLHRSHDA--SLTVL-LYPPPVS-------SEQKGGKGKSK 152
Query: 191 KPKGKDLKAMAVDTT---VLGLSKQEAEEKPYIASMG------------------VYLFK 229
K +D+ + +D +L ++ +E ++ VY+FK
Sbjct: 153 KADERDV--IGLDEKTQRLLFITSEEDLDEDLELRKSLLKRHPRVTITTKLLDAHVYIFK 210
Query: 230 KEIL 233
+ +L
Sbjct: 211 RWVL 214
|
N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 214 |
| >gnl|CDD|133019 cd02538, G1P_TT_short, G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 2e-10
Identities = 56/211 (26%), Positives = 90/211 (42%), Gaps = 36/211 (17%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
+IL GG+GTRLYPLTK +K +P+ +I P+S + +GI ++ I++
Sbjct: 3 GIILAGGSGTRLYPLTKVVSKQLLPV-YDKPMIYYPLSTLMLAGIREILIIST------P 55
Query: 71 RHLARAYN-YGSGVTFGDGCVEVLAATQ-TPGEAGKRWFQGTADAVRQFHWLFEDPRNKV 128
L G G G + + A Q PG G A A + E+
Sbjct: 56 EDLPLFKELLGDGSDLG---IRITYAVQPKPG--------GLAQAF----IIGEEFIGD- 99
Query: 129 IEDVLILSGDHLYR-MDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLS 187
+ V ++ GD+++ +Q T+ ++D +G+++ + GRVLS
Sbjct: 100 -DPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEVNDPER--YGVVEFDENGRVLS 156
Query: 188 FSEKPKGKDLKAMAV------DTTVLGLSKQ 212
EKPK K AV D V ++KQ
Sbjct: 157 IEEKPK-KPKSNYAVTGLYFYDNDVFEIAKQ 186
|
This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. Length = 240 |
| >gnl|CDD|133047 cd06425, M1P_guanylylT_B_like_N, N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 2e-09
Identities = 70/280 (25%), Positives = 109/280 (38%), Gaps = 62/280 (22%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPM-----SNCINSGINKVYILTQYN 65
A+IL GG GTRL PLT KP V + PM +G+ ++ + Y
Sbjct: 3 ALILVGGYGTRLRPLTLTVPKPLVEFC------NKPMIEHQIEALAKAGVKEIILAVNYR 56
Query: 66 SASLNRHLARAYN--YGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFED 123
+ L + Y G +TF +E P GTA + L D
Sbjct: 57 PEDMVPFL-KEYEKKLGIKITFS---IE-----TEP--------LGTAGPLA----LARD 95
Query: 124 PRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN-NE 182
E +L+ D + + + H++ GA+ TI ++D S +G++ + N
Sbjct: 96 LLGDDDEPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKVEDP--SKYGVVVHDENT 153
Query: 183 GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP 242
GR+ F EKPK V + + G+Y+ + L+ + R P
Sbjct: 154 GRIERFVEKPKVF------VGNKI---------------NAGIYILNPSV-LDRIPLR-P 190
Query: 243 TANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEA 282
T+ EI P A+E L AY +W DIG + F +
Sbjct: 191 TS--IEKEIFPKMASEGQLYAYELPGFWMDIGQPKDFLKG 228
|
GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation. Length = 233 |
| >gnl|CDD|133001 cd02507, eIF-2B_gamma_N_like, The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 3e-09
Identities = 29/128 (22%), Positives = 49/128 (38%), Gaps = 18/128 (14%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
AV+L G G+R PLT K +P+ LID + +G+ +V+++ +S ++
Sbjct: 3 AVVLADGFGSRFLPLTSDIPKALLPVANVP-LIDYTLEWLEKAGVEEVFVVCCEHSQAII 61
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIE 130
HL ++ + G A +R D R +
Sbjct: 62 EHLLKSKWSSLSSKMIVDVITSDLCESA----------GDALRLR-------DIRGLIRS 104
Query: 131 DVLILSGD 138
D L+LS D
Sbjct: 105 DFLLLSCD 112
|
N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 216 |
| >gnl|CDD|133044 cd06422, NTP_transferase_like_1, NTP_transferase_like_1 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 3e-08
Identities = 56/277 (20%), Positives = 100/277 (36%), Gaps = 62/277 (22%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
A+IL G GTR+ PLT R KP VP+ G LID + +GI ++ + T + + +
Sbjct: 2 AMILAAGLGTRMRPLTDTRPKPLVPVAGK-PLIDHALDRLAAAGIRRIVVNTHHLADQIE 60
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQ-FHWLFEDPRNKVI 129
HL + +G +T D E+L T +++ L ++P
Sbjct: 61 AHLGDS-RFGLRITISDEPDELL---------------ETGGGIKKALPLLGDEP----- 99
Query: 130 EDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRAS----DFGLMKINNEGRV 185
L+++GD L+ D + H D + LP+ + DF L + +GR+
Sbjct: 100 --FLVVNGDILWDGDLAPLLLLHAWR-MDALLLLLPLVRNPGHNGVGDFSL---DADGRL 153
Query: 186 LSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAN 245
P+ + G+ + E+ + +F
Sbjct: 154 RRGGGGAVA-----------------------PFTFT-GIQILSPELFAGIPPGKFSLN- 188
Query: 246 DFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEA 282
+ + L +++ W D+GT A
Sbjct: 189 ----PLWDRAIAAGRLFGLVYDGLWFDVGTPERLLAA 221
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. Length = 221 |
| >gnl|CDD|131672 TIGR02623, G1P_cyt_trans, glucose-1-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 2e-07
Identities = 57/203 (28%), Positives = 80/203 (39%), Gaps = 41/203 (20%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
AVIL GG GTR+ T R KP V IGG L + M + GIN I Y +
Sbjct: 2 AVILAGGLGTRISEETHLRPKPMVEIGGKPILWHI-MKIYSHHGINDFIICCGYKGYVIK 60
Query: 71 RHLARAYNYGSGVTF--GDGCVEVL---------------AATQTPGEAGKRWFQGTADA 113
+ A + + S VTF D +EV +TQT G +
Sbjct: 61 EYFANYFLHMSDVTFHMADNTMEVHHKRVEPWRVTLVDTGESTQTGGRLKR--------- 111
Query: 114 VRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASD 173
VR++ +D E GD + +D + HR+ G T++ +
Sbjct: 112 VREY---LDD------EAFCFTYGDGVADIDIKALIAFHRKHGKKATVTAV----QPPGR 158
Query: 174 FGLMKINNEGRVLSFSEKPKGKD 196
FG + + E +V SF EKP G
Sbjct: 159 FGALDLEGE-QVTSFQEKPLGDG 180
|
Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 254 |
| >gnl|CDD|133050 cd06428, M1P_guanylylT_A_like_N, N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 2e-07
Identities = 65/301 (21%), Positives = 104/301 (34%), Gaps = 75/301 (24%)
Query: 11 AVILGGGA--GTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCIN-SGINKVYILTQYNSA 67
AVIL GG GTR PL+ KP P+ G +I + C + +V ++ Y +
Sbjct: 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAG-KPMIHHHIEACAKVPDLKEVLLIGFYPES 59
Query: 68 SLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQ-----GTADAVRQFH--WL 120
+ ++ A V R+ Q GTA + F L
Sbjct: 60 VFSDFISDAQQE-FNVPI-------------------RYLQEYKPLGTAGGLYHFRDQIL 99
Query: 121 FEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFG-LMKI 179
+P +L+ D + ++ H++ GA TI +AS++G +++
Sbjct: 100 AGNP-----SAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEASREQASNYGCIVED 154
Query: 180 NNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEIL------ 233
+ G VL + EKP+ V + + GVYLF EI
Sbjct: 155 PSTGEVLHYVEKPETF------VSD---------------LINCGVYLFSPEIFDTIKKA 193
Query: 234 LNLLRWRFPTANDFGSE-----------IIPASANEQFLKAYLFNDYWEDIGTIRSFFEA 282
+ +D E ++ A L Y +D+W I T S A
Sbjct: 194 FQSRQQEAQLGDDNNREGRAEVIRLEQDVLTPLAGSGKLYVYKTDDFWSQIKTAGSAIYA 253
Query: 283 N 283
N
Sbjct: 254 N 254
|
N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes including cell lysis, defective cell wall, and failure of polarized growth and cell separation. Length = 257 |
| >gnl|CDD|133014 cd02523, PC_cytidylyltransferase, Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 4e-07
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
A+IL G G+RL PLT+ R K + I G L++ + +GI+ + I+T Y +
Sbjct: 1 AIILAAGRGSRLRPLTEDRPKCLLEINGK-PLLERQIETLKEAGIDDIVIVTGYKKEQIE 59
Query: 71 RHLARAYN 78
L + N
Sbjct: 60 ELLKKYPN 67
|
This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP-Cho to either lipoteichoic acid or lipopolysaccharide. Length = 229 |
| >gnl|CDD|130274 TIGR01207, rmlA, glucose-1-phosphate thymidylyltransferase, short form | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 6e-06
Identities = 51/188 (27%), Positives = 84/188 (44%), Gaps = 35/188 (18%)
Query: 12 VILGGGAGTRLYPLTKQRAKPAVPIGGAYR--LIDVPMSNCINSGINKVYILTQYNSASL 69
+IL GG+GTRLYP+T+ +K +PI Y +I P+S + +GI + I++
Sbjct: 3 IILAGGSGTRLYPITRAVSKQLLPI---YDKPMIYYPLSTLMLAGIRDILIISTPQDTPR 59
Query: 70 NRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVI 129
+ L G G +G V + A Q + G A A F + +
Sbjct: 60 FQQL-----LGDGSQWG---VNLSYAVQPSPD-------GLAQA-------FIIGEDFIG 97
Query: 130 ED--VLILSGDHLYRMDYMDFVQ--NHRQSGADITISCLPMDDSRASDFGLMKINNEGRV 185
D L+L + Y D D ++ R+SGA + + D R +G+++ ++ GR
Sbjct: 98 GDPSALVLGDNIFYGHDLSDLLKRAAARESGATV-FAYQVSDPER---YGVVEFDSNGRA 153
Query: 186 LSFSEKPK 193
+S EKP
Sbjct: 154 ISIEEKPA 161
|
Alternate name: dTDP-D-glucose synthase homotetramer This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 286 |
| >gnl|CDD|133020 cd02540, GT2_GlmU_N_bac, N-terminal domain of bacterial GlmU | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 1e-05
Identities = 53/235 (22%), Positives = 83/235 (35%), Gaps = 60/235 (25%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPM-----SNCINSGINKVYILTQYN 65
AVIL G GTR+ K P+ G PM G +++ ++ +
Sbjct: 1 AVILAAGKGTRMK---SDLPKVLHPLAG------KPMLEHVLDAARALGPDRIVVVVGHG 51
Query: 66 SASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPR 125
+ V F VL Q GT AV+Q
Sbjct: 52 -----AEQVKKALANPNVEF------VLQEEQ----------LGTGHAVKQA-LPALKDF 89
Query: 126 NKVIEDVLILSGDH-LYRMDYM-DFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEG 183
DVL+L GD L + + ++ HR++GAD+T+ ++D + +G + + G
Sbjct: 90 E---GDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELED--PTGYGRIIRDGNG 144
Query: 184 RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLR 238
+VL E+ KD E E+ + G+Y F E L L
Sbjct: 145 KVLRIVEE---KDAT--------------EEEKAIREVNAGIYAFDAEFLFEALP 182
|
The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively. Length = 229 |
| >gnl|CDD|133021 cd02541, UGPase_prokaryotic, Prokaryotic UGPase catalyses the synthesis of UDP-glucose | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 1e-04
Identities = 61/297 (20%), Positives = 111/297 (37%), Gaps = 56/297 (18%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVP-----MSNCINSGINKVYILTQYN 65
AVI G GTR P TK K +PI +D P + + +GI + I+T
Sbjct: 3 AVIPAAGLGTRFLPATKAIPKEMLPI------VDKPVIQYIVEEAVAAGIEDIIIVTGRG 56
Query: 66 SASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWF--Q----GTADAV-RQFH 118
++ H R+Y + G ++L + + + Q G AV
Sbjct: 57 KRAIEDHFDRSYELEETLEK-KGKTDLLEEVRIISDLANIHYVRQKEPLGLGHAVLCAKP 115
Query: 119 WLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMK 178
++ ++P ++ D LI S + + + ++ + ++GA + I+ + S +G++K
Sbjct: 116 FIGDEPFAVLLGDDLIDSKEP--CLKQL--IEAYEKTGASV-IAVEEVPPEDVSKYGIVK 170
Query: 179 I----NNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILL 234
+ +V EKPK E +A +G Y+ +I
Sbjct: 171 GEKIDGDVFKVKGLVEKPK-------------------PEEAPSNLAIVGRYVLTPDI-F 210
Query: 235 NLLRWRFPTANDFGSEI-----IPASANEQFLKAYLFNDYWEDIGTIRSFFEANLAL 286
++L G EI I E+ + AY+F D G + +A +
Sbjct: 211 DILE-NTKP--GKGGEIQLTDAIAKLLEEEPVYAYVFEGKRYDCGNKLGYLKATVEF 264
|
Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. Length = 267 |
| >gnl|CDD|185377 PRK15480, PRK15480, glucose-1-phosphate thymidylyltransferase RfbA; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 3e-04
Identities = 44/190 (23%), Positives = 85/190 (44%), Gaps = 31/190 (16%)
Query: 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYIL-TQYN 65
+T +IL GG+GTRLYP+T +K +PI +I P+S + +GI + I+ T +
Sbjct: 2 KTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQD 60
Query: 66 SASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPR 125
+ + L +G + + Q + D + Q + E+
Sbjct: 61 TPRFQQLLGDGSQWGLNLQYK--------------------VQPSPDGLAQAFIIGEEFI 100
Query: 126 NKVIEDVLILSGDHL-YRMDYMDFVQN--HRQSGADITISCLPMDDSRASDFGLMKINNE 182
+D ++ GD++ Y D ++ +++SGA T+ ++D +G+++ +
Sbjct: 101 GG--DDCALVLGDNIFYGHDLPKLMEAAVNKESGA--TVFAYHVNDPER--YGVVEFDQN 154
Query: 183 GRVLSFSEKP 192
G +S EKP
Sbjct: 155 GTAISLEEKP 164
|
Length = 292 |
| >gnl|CDD|184643 PRK14354, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 8e-04
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 17/77 (22%)
Query: 317 SKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGA-----DFYETDAEVAS 371
S+IVDS I G IT+S IE S VG + HL+ ++G +F E
Sbjct: 296 SRIVDSTIGDGVTITNSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKST-- 353
Query: 372 LLAEGRVPVGIGENTKI 388
IGE TK+
Sbjct: 354 ----------IGEGTKV 360
|
Length = 458 |
| >gnl|CDD|224128 COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.002
Identities = 87/409 (21%), Positives = 139/409 (33%), Gaps = 106/409 (25%)
Query: 7 RTVAAVILGGGAGTRLYPLTKQRAKPAV--PIGGAYRLIDVPMSNCINSGINKVYILTQY 64
+++AVIL G GTR+ P V P+ G PM +++
Sbjct: 1 MSLSAVILAAGKGTRMK-----SDLPKVLHPVAG------KPMLE---------HVIDAA 40
Query: 65 NSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWF-----QGTADAVRQFHW 119
+ + V G G +V A + + GT AV Q
Sbjct: 41 RALG-PDDIV--------VVVGHGAEQVREALAERDDV--EFVLQEEQLGTGHAVLQALP 89
Query: 120 LFEDPRNKVIEDVLILSGDH-LYRMDYM-DFVQNHRQSGADITISCLPMDDSRASDFGLM 177
D + DVL+L GD L + + + + H GA T+ +DD + +G +
Sbjct: 90 ALADDYD---GDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAELDD--PTGYGRI 144
Query: 178 KINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKP--YIASMGVYLFKKEILLN 235
+ G V + E+ KD EEK I + G+Y F LL
Sbjct: 145 VRDGNGEVTAIVEE---KDA---------------SEEEKQIKEINT-GIYAFDGAALLR 185
Query: 236 LLRWRFPTANDFG----SEIIP-ASANEQFLKAYLFNDYWEDIG--------TIRSFFEA 282
L + N G +++I A + ++A +D E +G +
Sbjct: 186 ALP-KLSNNNAQGEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQR 244
Query: 283 NLA-------LTAHPPMFSFYDATKP------IYTSRRNLPPSKIDD-------SKIVDS 322
+A +T P ++ I + + I D S I DS
Sbjct: 245 RIAEKLMLAGVTLIDPATTYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDS 304
Query: 323 IISHGSFITS-SFIEHSVVGIRSRINANVHLKDTMMLGAD-----FYET 365
+I + I + S IE S VG + + L+ +LGAD F E
Sbjct: 305 VIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNFVEV 353
|
Length = 460 |
| >gnl|CDD|184021 PRK13389, PRK13389, UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.002
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 11/78 (14%)
Query: 1 MEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPM-----SNCINSGI 55
M + + AVI G GTR+ P TK K +P L+D P+ + CI +GI
Sbjct: 1 MAAINTKVKKAVIPVAGLGTRMLPATKAIPKEMLP------LVDKPLIQYVVNECIAAGI 54
Query: 56 NKVYILTQYNSASLNRHL 73
++ ++T + S+ H
Sbjct: 55 TEIVLVTHSSKNSIENHF 72
|
Length = 302 |
| >gnl|CDD|237689 PRK14359, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.003
Identities = 64/281 (22%), Positives = 101/281 (35%), Gaps = 75/281 (26%)
Query: 107 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQ-----NHRQSGADITI 161
+ GT A+ +P++ E VLIL+GD M V+ ++ ADI +
Sbjct: 79 YPGTGGALMGI-----EPKH---ERVLILNGD-------MPLVEKDELEKLLENDADIVM 123
Query: 162 SCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIA 221
S + D +G + I N G+V E+ KD E E K
Sbjct: 124 SVFHLAD--PKGYGRVVIEN-GQVKKIVEQ---KDAN--------------EEELKIKSV 163
Query: 222 SMGVYLFKKEILLNLL---------RWRFPT-----ANDFGSEIIPASANEQFLKAYLFN 267
+ GVYLF +++L L + + T A + G I +E+ N
Sbjct: 164 NAGVYLFDRKLLEEYLPLLKNQNAQKEYYLTDIIALAIEKGETIKAVFVDEENFMG--VN 221
Query: 268 DYW-----EDI--GTIRSFFEANLALTAHPPMFSFYDATKP------IYTSRRNLPPSKI 314
+ E+I I+ + P + ++ + R L SKI
Sbjct: 222 SKFELAKAEEIMQERIKKNAMKQ-GVIMRLPETIYIESGVEFEGECELEEGVRILGKSKI 280
Query: 315 DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDT 355
+S I S I S IE+S VG + I +K+T
Sbjct: 281 -----ENSHIKAHSVIEESIIENSDVGPLAHIRPKSEIKNT 316
|
Length = 430 |
| >gnl|CDD|133015 cd02524, G1P_cytidylyltransferase, G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 0.004
Identities = 16/28 (57%), Positives = 18/28 (64%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGG 38
VIL GG GTRL T+ + KP V IGG
Sbjct: 1 VVILAGGLGTRLSEETELKPKPMVEIGG 28
|
Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity. Length = 253 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 415 | |||
| COG0448 | 393 | GlgC ADP-glucose pyrophosphorylase [Carbohydrate t | 100.0 | |
| PLN02241 | 436 | glucose-1-phosphate adenylyltransferase | 100.0 | |
| KOG1322 | 371 | consensus GDP-mannose pyrophosphorylase/mannose-1- | 100.0 | |
| PRK02862 | 429 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| PRK00844 | 407 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| PRK05293 | 380 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| PRK00725 | 425 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| TIGR02092 | 369 | glgD glucose-1-phosphate adenylyltransferase, GlgD | 100.0 | |
| TIGR02091 | 361 | glgC glucose-1-phosphate adenylyltransferase. This | 100.0 | |
| COG1208 | 358 | GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas | 100.0 | |
| TIGR01208 | 353 | rmlA_long glucose-1-phosphate thymidylylransferase | 100.0 | |
| KOG1460 | 407 | consensus GDP-mannose pyrophosphorylase [Carbohydr | 100.0 | |
| KOG1461 | 673 | consensus Translation initiation factor 2B, epsilo | 100.0 | |
| KOG1462 | 433 | consensus Translation initiation factor 2B, gamma | 100.0 | |
| PRK14355 | 459 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| COG1207 | 460 | GlmU N-acetylglucosamine-1-phosphate uridyltransfe | 100.0 | |
| PRK14358 | 481 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14352 | 482 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| COG1209 | 286 | RfbA dTDP-glucose pyrophosphorylase [Cell envelope | 100.0 | |
| PRK14359 | 430 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| TIGR01173 | 451 | glmU UDP-N-acetylglucosamine diphosphorylase/gluco | 100.0 | |
| PRK09451 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14356 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14353 | 446 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| TIGR01105 | 297 | galF UTP-glucose-1-phosphate uridylyltransferase, | 100.0 | |
| PRK14354 | 458 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14357 | 448 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK10122 | 297 | GalU regulator GalF; Provisional | 100.0 | |
| PF00483 | 248 | NTP_transferase: Nucleotidyl transferase This Pros | 100.0 | |
| cd06425 | 233 | M1P_guanylylT_B_like_N N-terminal domain of the M1 | 100.0 | |
| cd06428 | 257 | M1P_guanylylT_A_like_N N-terminal domain of M1P_gu | 100.0 | |
| PRK14360 | 450 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK15480 | 292 | glucose-1-phosphate thymidylyltransferase RfbA; Pr | 100.0 | |
| TIGR02623 | 254 | G1P_cyt_trans glucose-1-phosphate cytidylyltransfe | 100.0 | |
| cd02538 | 240 | G1P_TT_short G1P_TT_short is the short form of glu | 100.0 | |
| TIGR01207 | 286 | rmlA glucose-1-phosphate thymidylyltransferase, sh | 100.0 | |
| PRK13389 | 302 | UTP--glucose-1-phosphate uridylyltransferase subun | 100.0 | |
| cd02541 | 267 | UGPase_prokaryotic Prokaryotic UGPase catalyses th | 100.0 | |
| cd02524 | 253 | G1P_cytidylyltransferase G1P_cytidylyltransferase | 100.0 | |
| TIGR01099 | 260 | galU UTP-glucose-1-phosphate uridylyltransferase. | 100.0 | |
| cd06422 | 221 | NTP_transferase_like_1 NTP_transferase_like_1 is a | 100.0 | |
| cd04189 | 236 | G1P_TT_long G1P_TT_long represents the long form o | 100.0 | |
| cd06915 | 223 | NTP_transferase_WcbM_like WcbM_like is a subfamily | 100.0 | |
| cd04181 | 217 | NTP_transferase NTP_transferases catalyze the tran | 100.0 | |
| cd06426 | 220 | NTP_transferase_like_2 NTP_trnasferase_like_2 is a | 100.0 | |
| COG1210 | 291 | GalU UDP-glucose pyrophosphorylase [Cell envelope | 100.0 | |
| cd04197 | 217 | eIF-2B_epsilon_N The N-terminal domain of epsilon | 100.0 | |
| cd02508 | 200 | ADP_Glucose_PP ADP-glucose pyrophosphorylase is in | 99.97 | |
| cd04183 | 231 | GT2_BcE_like GT2_BcbE_like is likely involved in t | 99.97 | |
| cd02523 | 229 | PC_cytidylyltransferase Phosphocholine cytidylyltr | 99.97 | |
| cd02507 | 216 | eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma | 99.95 | |
| cd04198 | 214 | eIF-2B_gamma_N The N-terminal domain of gamma subu | 99.95 | |
| cd02509 | 274 | GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransf | 99.95 | |
| cd02540 | 229 | GT2_GlmU_N_bac N-terminal domain of bacterial GlmU | 99.95 | |
| TIGR01479 | 468 | GMP_PMI mannose-1-phosphate guanylyltransferase/ma | 99.93 | |
| COG1213 | 239 | Predicted sugar nucleotidyltransferases [Cell enve | 99.93 | |
| PRK05450 | 245 | 3-deoxy-manno-octulosonate cytidylyltransferase; P | 99.93 | |
| cd02517 | 239 | CMP-KDO-Synthetase CMP-KDO synthetase catalyzes th | 99.92 | |
| PRK13368 | 238 | 3-deoxy-manno-octulosonate cytidylyltransferase; P | 99.89 | |
| PRK15460 | 478 | cpsB mannose-1-phosphate guanyltransferase; Provis | 99.85 | |
| COG4750 | 231 | LicC CTP:phosphocholine cytidylyltransferase invol | 99.82 | |
| COG0836 | 333 | {ManC} Mannose-1-phosphate guanylyltransferase [Ce | 99.8 | |
| PLN02917 | 293 | CMP-KDO synthetase | 99.8 | |
| TIGR00453 | 217 | ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl | 99.72 | |
| PRK00155 | 227 | ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl | 99.71 | |
| TIGR00466 | 238 | kdsB 3-deoxy-D-manno-octulosonate cytidylyltransfe | 99.67 | |
| PRK09382 | 378 | ispDF bifunctional 2-C-methyl-D-erythritol 4-phosp | 99.66 | |
| cd02516 | 218 | CDP-ME_synthetase CDP-ME synthetase is involved in | 99.66 | |
| TIGR03532 | 231 | DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla | 99.66 | |
| TIGR00454 | 183 | conserved hypothetical protein TIGR00454. At this | 99.66 | |
| PF12804 | 160 | NTP_transf_3: MobA-like NTP transferase domain; PD | 99.63 | |
| cd02513 | 223 | CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N- | 99.63 | |
| PRK13385 | 230 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 99.63 | |
| TIGR03310 | 188 | matur_ygfJ molybdenum hydroxylase accessory protei | 99.6 | |
| COG2266 | 177 | GTP:adenosylcobinamide-phosphate guanylyltransfera | 99.56 | |
| PRK00317 | 193 | mobA molybdopterin-guanine dinucleotide biosynthes | 99.55 | |
| PLN02728 | 252 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 99.53 | |
| cd04182 | 186 | GT_2_like_f GT_2_like_f is a subfamily of the glyc | 99.53 | |
| cd04652 | 81 | LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal | 99.49 | |
| PRK02726 | 200 | molybdopterin-guanine dinucleotide biosynthesis pr | 99.47 | |
| COG2068 | 199 | Uncharacterized MobA-related protein [General func | 99.46 | |
| cd04651 | 104 | LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera | 99.43 | |
| TIGR03584 | 222 | PseF pseudaminic acid CMP-transferase. The sequenc | 99.42 | |
| cd02503 | 181 | MobA MobA catalyzes the formation of molybdopterin | 99.41 | |
| PRK00560 | 196 | molybdopterin-guanine dinucleotide biosynthesis pr | 99.4 | |
| PRK14489 | 366 | putative bifunctional molybdopterin-guanine dinucl | 99.39 | |
| PF01128 | 221 | IspD: 2-C-methyl-D-erythritol 4-phosphate cytidyly | 99.35 | |
| cd03356 | 79 | LbH_G1P_AT_C_like Left-handed parallel beta-Helix | 99.35 | |
| COG1211 | 230 | IspD 4-diphosphocytidyl-2-methyl-D-erithritol synt | 99.34 | |
| COG1212 | 247 | KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase | 99.34 | |
| TIGR03202 | 190 | pucB xanthine dehydrogenase accessory protein pucB | 99.33 | |
| KOG1461 | 673 | consensus Translation initiation factor 2B, epsilo | 99.32 | |
| TIGR02665 | 186 | molyb_mobA molybdopterin-guanine dinucleotide bios | 99.31 | |
| cd02518 | 233 | GT2_SpsF SpsF is a glycosyltrnasferase implicated | 99.29 | |
| cd05636 | 163 | LbH_G1P_TT_C_like Putative glucose-1-phosphate thy | 99.29 | |
| KOG1462 | 433 | consensus Translation initiation factor 2B, gamma | 99.29 | |
| PRK14490 | 369 | putative bifunctional molybdopterin-guanine dinucl | 99.27 | |
| cd05787 | 79 | LbH_eIF2B_epsilon eIF-2B epsilon subunit, central | 99.25 | |
| cd05824 | 80 | LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr | 99.24 | |
| cd03353 | 193 | LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl | 99.24 | |
| TIGR03308 | 204 | phn_thr-fam phosphonate metabolim protein, transfe | 99.22 | |
| cd04745 | 155 | LbH_paaY_like paaY-like: This group is composed by | 99.21 | |
| COG1044 | 338 | LpxD UDP-3-O-[3-hydroxymyristoyl] | 99.2 | |
| TIGR02287 | 192 | PaaY phenylacetic acid degradation protein PaaY. M | 99.16 | |
| cd04652 | 81 | LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal | 99.16 | |
| COG0746 | 192 | MobA Molybdopterin-guanine dinucleotide biosynthes | 99.15 | |
| TIGR01853 | 324 | lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam | 99.12 | |
| cd04180 | 266 | UGPase_euk_like Eukaryotic UGPase-like includes UD | 99.11 | |
| cd04193 | 323 | UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catala | 99.11 | |
| cd05636 | 163 | LbH_G1P_TT_C_like Putative glucose-1-phosphate thy | 99.11 | |
| cd03356 | 79 | LbH_G1P_AT_C_like Left-handed parallel beta-Helix | 99.1 | |
| cd05787 | 79 | LbH_eIF2B_epsilon eIF-2B epsilon subunit, central | 99.1 | |
| COG1207 | 460 | GlmU N-acetylglucosamine-1-phosphate uridyltransfe | 99.08 | |
| TIGR03570 | 201 | NeuD_NnaD sugar O-acyltransferase, sialic acid O-a | 99.08 | |
| PLN02472 | 246 | uncharacterized protein | 99.07 | |
| cd04650 | 154 | LbH_FBP Ferripyochelin Binding Protein (FBP): FBP | 99.07 | |
| cd04646 | 164 | LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact | 99.06 | |
| PLN02296 | 269 | carbonate dehydratase | 99.06 | |
| cd03360 | 197 | LbH_AT_putative Putative Acyltransferase (AT), Lef | 99.03 | |
| cd03353 | 193 | LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl | 99.02 | |
| cd03351 | 254 | LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr | 99.02 | |
| cd03358 | 119 | LbH_WxcM_N_like WcxM-like, Left-handed parallel be | 99.02 | |
| PRK05289 | 262 | UDP-N-acetylglucosamine acyltransferase; Provision | 99.01 | |
| PRK00892 | 343 | lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac | 99.01 | |
| PRK05289 | 262 | UDP-N-acetylglucosamine acyltransferase; Provision | 99.01 | |
| PRK13627 | 196 | carnitine operon protein CaiE; Provisional | 99.0 | |
| cd03351 | 254 | LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr | 99.0 | |
| PRK14355 | 459 | glmU bifunctional N-acetylglucosamine-1-phosphate | 99.0 | |
| TIGR01852 | 254 | lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac | 99.0 | |
| PRK05293 | 380 | glgC glucose-1-phosphate adenylyltransferase; Prov | 98.99 | |
| cd04645 | 153 | LbH_gamma_CA_like Gamma carbonic anhydrase-like: T | 98.99 | |
| PRK12461 | 255 | UDP-N-acetylglucosamine acyltransferase; Provision | 98.96 | |
| cd05824 | 80 | LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr | 98.95 | |
| COG1083 | 228 | NeuA CMP-N-acetylneuraminic acid synthetase [Cell | 98.95 | |
| cd00710 | 167 | LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo | 98.95 | |
| PRK14356 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.94 | |
| PRK14500 | 346 | putative bifunctional molybdopterin-guanine dinucl | 98.94 | |
| PTZ00339 | 482 | UDP-N-acetylglucosamine pyrophosphorylase; Provisi | 98.93 | |
| cd04651 | 104 | LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera | 98.92 | |
| cd04745 | 155 | LbH_paaY_like paaY-like: This group is composed by | 98.91 | |
| cd05635 | 101 | LbH_unknown Uncharacterized proteins, Left-handed | 98.91 | |
| cd00710 | 167 | LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo | 98.91 | |
| TIGR01173 | 451 | glmU UDP-N-acetylglucosamine diphosphorylase/gluco | 98.91 | |
| TIGR01852 | 254 | lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac | 98.9 | |
| COG0448 | 393 | GlgC ADP-glucose pyrophosphorylase [Carbohydrate t | 98.89 | |
| PLN02474 | 469 | UTP--glucose-1-phosphate uridylyltransferase | 98.89 | |
| TIGR02287 | 192 | PaaY phenylacetic acid degradation protein PaaY. M | 98.89 | |
| TIGR00965 | 269 | dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate | 98.87 | |
| PRK00892 | 343 | lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac | 98.85 | |
| PRK14358 | 481 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.84 | |
| PRK13627 | 196 | carnitine operon protein CaiE; Provisional | 98.83 | |
| cd03352 | 205 | LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas | 98.83 | |
| cd03350 | 139 | LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d | 98.83 | |
| COG0663 | 176 | PaaY Carbonic anhydrases/acetyltransferases, isole | 98.82 | |
| PRK02862 | 429 | glgC glucose-1-phosphate adenylyltransferase; Prov | 98.82 | |
| cd04646 | 164 | LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact | 98.82 | |
| PRK14353 | 446 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.81 | |
| cd03359 | 161 | LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact | 98.8 | |
| PRK00844 | 407 | glgC glucose-1-phosphate adenylyltransferase; Prov | 98.78 | |
| cd04650 | 154 | LbH_FBP Ferripyochelin Binding Protein (FBP): FBP | 98.78 | |
| cd04645 | 153 | LbH_gamma_CA_like Gamma carbonic anhydrase-like: T | 98.77 | |
| TIGR01853 | 324 | lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam | 98.77 | |
| PRK11132 | 273 | cysE serine acetyltransferase; Provisional | 98.77 | |
| PRK09451 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.77 | |
| cd04649 | 147 | LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah | 98.75 | |
| TIGR03308 | 204 | phn_thr-fam phosphonate metabolim protein, transfe | 98.75 | |
| PRK11830 | 272 | dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N- | 98.75 | |
| PLN02241 | 436 | glucose-1-phosphate adenylyltransferase | 98.75 | |
| PRK10502 | 182 | putative acyl transferase; Provisional | 98.72 | |
| PLN02296 | 269 | carbonate dehydratase | 98.72 | |
| COG1044 | 338 | LpxD UDP-3-O-[3-hydroxymyristoyl] | 98.71 | |
| cd00208 | 78 | LbetaH Left-handed parallel beta-Helix (LbetaH or | 98.7 | |
| PRK00725 | 425 | glgC glucose-1-phosphate adenylyltransferase; Prov | 98.7 | |
| TIGR03532 | 231 | DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla | 98.69 | |
| PRK14352 | 482 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.68 | |
| PRK14354 | 458 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.68 | |
| COG1208 | 358 | GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas | 98.67 | |
| PRK11830 | 272 | dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N- | 98.67 | |
| PRK14357 | 448 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.67 | |
| TIGR00965 | 269 | dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate | 98.63 | |
| KOG1460 | 407 | consensus GDP-mannose pyrophosphorylase [Carbohydr | 98.63 | |
| PLN02472 | 246 | uncharacterized protein | 98.61 | |
| PLN02694 | 294 | serine O-acetyltransferase | 98.59 | |
| PRK09527 | 203 | lacA galactoside O-acetyltransferase; Reviewed | 98.57 | |
| TIGR02092 | 369 | glgD glucose-1-phosphate adenylyltransferase, GlgD | 98.56 | |
| PRK14360 | 450 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.55 | |
| PRK10092 | 183 | maltose O-acetyltransferase; Provisional | 98.53 | |
| TIGR01172 | 162 | cysE serine O-acetyltransferase. Cysteine biosynth | 98.53 | |
| cd05635 | 101 | LbH_unknown Uncharacterized proteins, Left-handed | 98.52 | |
| cd03354 | 101 | LbH_SAT Serine acetyltransferase (SAT): SAT cataly | 98.52 | |
| TIGR02091 | 361 | glgC glucose-1-phosphate adenylyltransferase. This | 98.52 | |
| PRK12461 | 255 | UDP-N-acetylglucosamine acyltransferase; Provision | 98.5 | |
| cd03360 | 197 | LbH_AT_putative Putative Acyltransferase (AT), Lef | 98.49 | |
| PRK09677 | 192 | putative lipopolysaccharide biosynthesis O-acetyl | 98.48 | |
| cd03350 | 139 | LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d | 98.48 | |
| PLN02357 | 360 | serine acetyltransferase | 98.47 | |
| COG1043 | 260 | LpxA Acyl-[acyl carrier protein] | 98.47 | |
| cd05825 | 107 | LbH_wcaF_like wcaF-like: This group is composed of | 98.46 | |
| TIGR01208 | 353 | rmlA_long glucose-1-phosphate thymidylylransferase | 98.45 | |
| cd03352 | 205 | LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas | 98.44 | |
| PRK14359 | 430 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.44 | |
| cd03357 | 169 | LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and | 98.43 | |
| TIGR03536 | 341 | DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl | 98.43 | |
| cd00897 | 300 | UGPase_euk Eukaryotic UGPase catalyses the synthes | 98.43 | |
| cd04647 | 109 | LbH_MAT_like Maltose O-acyltransferase (MAT)-like: | 98.42 | |
| TIGR03570 | 201 | NeuD_NnaD sugar O-acyltransferase, sialic acid O-a | 98.4 | |
| PRK10191 | 146 | putative acyl transferase; Provisional | 98.39 | |
| PLN02739 | 355 | serine acetyltransferase | 98.39 | |
| cd03358 | 119 | LbH_WxcM_N_like WcxM-like, Left-handed parallel be | 98.38 | |
| TIGR03535 | 319 | DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo | 98.35 | |
| TIGR01172 | 162 | cysE serine O-acetyltransferase. Cysteine biosynth | 98.32 | |
| COG2171 | 271 | DapD Tetrahydrodipicolinate N-succinyltransferase | 98.32 | |
| COG0663 | 176 | PaaY Carbonic anhydrases/acetyltransferases, isole | 98.31 | |
| cd03359 | 161 | LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact | 98.3 | |
| COG2171 | 271 | DapD Tetrahydrodipicolinate N-succinyltransferase | 98.3 | |
| COG1861 | 241 | SpsF Spore coat polysaccharide biosynthesis protei | 98.2 | |
| TIGR03535 | 319 | DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo | 98.19 | |
| PF02348 | 217 | CTP_transf_3: Cytidylyltransferase; InterPro: IPR0 | 98.17 | |
| COG4284 | 472 | UDP-glucose pyrophosphorylase [Carbohydrate transp | 98.16 | |
| PF07959 | 414 | Fucokinase: L-fucokinase; InterPro: IPR012887 In t | 98.14 | |
| PLN02435 | 493 | probable UDP-N-acetylglucosamine pyrophosphorylase | 98.14 | |
| cd00208 | 78 | LbetaH Left-handed parallel beta-Helix (LbetaH or | 98.14 | |
| COG1045 | 194 | CysE Serine acetyltransferase [Amino acid transpor | 98.14 | |
| PRK10502 | 182 | putative acyl transferase; Provisional | 98.12 | |
| cd04649 | 147 | LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah | 98.11 | |
| PF01704 | 420 | UDPGP: UTP--glucose-1-phosphate uridylyltransferas | 98.09 | |
| COG1043 | 260 | LpxA Acyl-[acyl carrier protein] | 98.07 | |
| PRK11132 | 273 | cysE serine acetyltransferase; Provisional | 98.06 | |
| PRK10191 | 146 | putative acyl transferase; Provisional | 98.04 | |
| PLN02739 | 355 | serine acetyltransferase | 98.03 | |
| PLN02357 | 360 | serine acetyltransferase | 98.03 | |
| cd04647 | 109 | LbH_MAT_like Maltose O-acyltransferase (MAT)-like: | 98.0 | |
| PRK13412 | 974 | fkp bifunctional fucokinase/L-fucose-1-P-guanylylt | 97.98 | |
| cd03349 | 145 | LbH_XAT Xenobiotic acyltransferase (XAT): The XAT | 97.98 | |
| PLN02694 | 294 | serine O-acetyltransferase | 97.96 | |
| TIGR03536 | 341 | DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl | 97.95 | |
| cd06424 | 315 | UGGPase UGGPase catalyzes the synthesis of UDP-Glu | 97.95 | |
| cd03357 | 169 | LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and | 97.89 | |
| KOG1322 | 371 | consensus GDP-mannose pyrophosphorylase/mannose-1- | 97.81 | |
| PRK09677 | 192 | putative lipopolysaccharide biosynthesis O-acetyl | 97.79 | |
| PRK10092 | 183 | maltose O-acetyltransferase; Provisional | 97.78 | |
| KOG3121 | 184 | consensus Dynactin, subunit p25 [Cytoskeleton] | 97.77 | |
| PRK09527 | 203 | lacA galactoside O-acetyltransferase; Reviewed | 97.75 | |
| cd03354 | 101 | LbH_SAT Serine acetyltransferase (SAT): SAT cataly | 97.72 | |
| cd05825 | 107 | LbH_wcaF_like wcaF-like: This group is composed of | 97.66 | |
| KOG4042 | 190 | consensus Dynactin subunit p27/WS-3, involved in t | 97.66 | |
| PRK00576 | 178 | molybdopterin-guanine dinucleotide biosynthesis pr | 97.49 | |
| PLN02830 | 615 | UDP-sugar pyrophosphorylase | 97.43 | |
| TIGR02353 | 695 | NRPS_term_dom non-ribosomal peptide synthetase ter | 97.43 | |
| PF00132 | 36 | Hexapep: Bacterial transferase hexapeptide (six re | 97.41 | |
| TIGR02353 | 695 | NRPS_term_dom non-ribosomal peptide synthetase ter | 97.4 | |
| COG1045 | 194 | CysE Serine acetyltransferase [Amino acid transpor | 97.3 | |
| PF14602 | 34 | Hexapep_2: Hexapeptide repeat of succinyl-transfer | 97.06 | |
| PF00132 | 36 | Hexapep: Bacterial transferase hexapeptide (six re | 97.02 | |
| COG0110 | 190 | WbbJ Acetyltransferase (isoleucine patch superfami | 96.98 | |
| cd03349 | 145 | LbH_XAT Xenobiotic acyltransferase (XAT): The XAT | 96.89 | |
| PF14602 | 34 | Hexapep_2: Hexapeptide repeat of succinyl-transfer | 96.78 | |
| KOG4042 | 190 | consensus Dynactin subunit p27/WS-3, involved in t | 96.72 | |
| KOG3121 | 184 | consensus Dynactin, subunit p25 [Cytoskeleton] | 96.69 | |
| KOG4750 | 269 | consensus Serine O-acetyltransferase [Amino acid t | 96.65 | |
| KOG2638 | 498 | consensus UDP-glucose pyrophosphorylase [Carbohydr | 96.56 | |
| COG4801 | 277 | Predicted acyltransferase [General function predic | 96.51 | |
| COG4801 | 277 | Predicted acyltransferase [General function predic | 96.41 | |
| KOG4750 | 269 | consensus Serine O-acetyltransferase [Amino acid t | 96.08 | |
| TIGR03552 | 195 | F420_cofC 2-phospho-L-lactate guanylyltransferase | 95.74 | |
| cd00761 | 156 | Glyco_tranf_GTA_type Glycosyltransferase family A | 95.47 | |
| COG0110 | 190 | WbbJ Acetyltransferase (isoleucine patch superfami | 95.23 | |
| PF00535 | 169 | Glycos_transf_2: Glycosyl transferase family 2; In | 93.71 | |
| PF07959 | 414 | Fucokinase: L-fucokinase; InterPro: IPR012887 In t | 92.18 | |
| cd04186 | 166 | GT_2_like_c Subfamily of Glycosyltransferase Famil | 88.71 | |
| cd06434 | 235 | GT2_HAS Hyaluronan synthases catalyze polymerizati | 88.32 | |
| PRK13412 | 974 | fkp bifunctional fucokinase/L-fucose-1-P-guanylylt | 86.55 | |
| cd04179 | 185 | DPM_DPG-synthase_like DPM_DPG-synthase_like is a m | 86.4 | |
| cd02525 | 249 | Succinoglycan_BP_ExoA ExoA is involved in the bios | 85.32 | |
| cd06423 | 180 | CESA_like CESA_like is the cellulose synthase supe | 85.06 | |
| cd06439 | 251 | CESA_like_1 CESA_like_1 is a member of the cellulo | 83.89 | |
| KOG2388 | 477 | consensus UDP-N-acetylglucosamine pyrophosphorylas | 82.56 | |
| cd06442 | 224 | DPM1_like DPM1_like represents putative enzymes si | 80.91 | |
| cd04188 | 211 | DPG_synthase DPG_synthase is involved in protein N | 80.84 |
| >COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-67 Score=483.13 Aligned_cols=357 Identities=41% Similarity=0.721 Sum_probs=322.7
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCccc
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (415)
++++.|+|||+|.|+||.|||..++||.+||+|||+||+++|+++.++|+++|.|++.|+..++.+|+...|.|..+.
T Consensus 3 ~~~~laiILaGg~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNSGi~~I~VltQy~~~SL~~Hi~~G~~w~l~~-- 80 (393)
T COG0448 3 KKNVLAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSHSLNDHIGRGWPWDLDR-- 80 (393)
T ss_pred ccceEEEEEcCCCCCccchhhhCccccccccCceeEEEeEEcccccccCCCeEEEEeccchhHHHHHhhCCCcccccc--
Confidence 467889999999999999999999999999999999999999999999999999999999999999997665443221
Q ss_pred CCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEEE
Q 014953 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLP 165 (415)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~~ 165 (415)
..+++.++++.+. ..++.|+.||++|+++.+.++.+. ..+.+++++||++++.|+..|+++|.+.++++|+++.+
T Consensus 81 ~~~~v~ilp~~~~--~~~~~wy~Gtadai~Qnl~~i~~~---~~eyvlIlsgDhIYkmDy~~ml~~H~~~gadiTv~~~~ 155 (393)
T COG0448 81 KNGGVFILPAQQR--EGGERWYEGTADAIYQNLLIIRRS---DPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKE 155 (393)
T ss_pred ccCcEEEeCchhc--cCCCcceeccHHHHHHhHHHHHhc---CCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEEE
Confidence 1356888887665 234679999999999999988763 47999999999999999999999999999999999999
Q ss_pred cCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCC---
Q 014953 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP--- 242 (415)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~--- 242 (415)
++.+++++||++.+|++++|+.|.|||..... ...++++|+|+|++++|..+|++...
T Consensus 156 Vp~~eas~fGim~~D~~~~i~~F~eKp~~~~~-------------------~~~laSMgiYIf~~~~L~~~L~~~~~~~~ 216 (393)
T COG0448 156 VPREEASRFGVMNVDENGRIIEFVEKPADGPP-------------------SNSLASMGIYIFNTDLLKELLEEDAKDPN 216 (393)
T ss_pred CChHhhhhcCceEECCCCCEEeeeeccCcCCc-------------------ccceeeeeeEEEcHHHHHHHHHHHhcccC
Confidence 99988999999999999999999999997210 12379999999999999999886543
Q ss_pred CCCcccccchhhhcccceEEEEEeCceEEecCCHHHHHHHHHhhcCCCCCCCccCCCCCccccCccCCCeee-cCCcccc
Q 014953 243 TANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKI-DDSKIVD 321 (415)
Q Consensus 243 ~~~~~~~~~l~~l~~~~~i~~~~~~g~~~di~t~~~y~~an~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~i-~~~~i~~ 321 (415)
...+|..+++|.+++.+++++|+++|||.||||.++|++||+++++..+.+.+++++|++++.....||+++ .++.+.+
T Consensus 217 ~~~DfgkdiIp~~~~~~~v~AY~f~gYw~dVgTi~syy~aNmdLl~~~~~~~lyd~~w~IyT~~~~~pPak~~~~s~v~n 296 (393)
T COG0448 217 SSHDFGKDIIPKLLERGKVYAYEFSGYWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPIYTKNKNLPPAKFVNDSEVSN 296 (393)
T ss_pred ccccchHHHHHHHHhcCCEEEEeccchhhhcccHHHHHHhhHHhcCCCCcccccCCCCceeecCCCCCCceEecCceEee
Confidence 357899999999999999999999999999999999999999999977778889999999999999999999 7788899
Q ss_pred ceECCCCEEcceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEeeeEECCCeEEcC
Q 014953 322 SIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKYEQLKPICHIVE 401 (415)
Q Consensus 322 ~~ig~~~~I~~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~~i~~~~~i~~ 401 (415)
|.|++||+|.+ +|+||+|+.+++|+.+|.|.+|+||++ |.||+||+|++|||.+||.|++
T Consensus 297 SLv~~GciI~G-~V~nSVL~~~v~I~~gs~i~~svim~~-------------------~~IG~~~~l~~aIIDk~v~I~~ 356 (393)
T COG0448 297 SLVAGGCIISG-TVENSVLFRGVRIGKGSVIENSVIMPD-------------------VEIGEGAVLRRAIIDKNVVIGE 356 (393)
T ss_pred eeeeCCeEEEe-EEEeeEEecCeEECCCCEEEeeEEeCC-------------------cEECCCCEEEEEEeCCCcEeCC
Confidence 99999999987 999999999999999999999999999 9999999999999999999999
Q ss_pred CcccCcc
Q 014953 402 TKYDSST 408 (415)
Q Consensus 402 ~~~~~~~ 408 (415)
|++.-..
T Consensus 357 g~~i~~~ 363 (393)
T COG0448 357 GVVIGGD 363 (393)
T ss_pred CcEEcCC
Confidence 9975443
|
|
| >PLN02241 glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-60 Score=468.18 Aligned_cols=397 Identities=73% Similarity=1.207 Sum_probs=317.1
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCccc
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (415)
|++|+|||||||+|+||+|||.++||||+||+|+||||+|+|++|.++|+++|+++++|+.+++.+|+...|.++.+..+
T Consensus 1 ~~~~~aIIlA~G~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~~Gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~~~ 80 (436)
T PLN02241 1 PKSVAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFNSASLNRHLSRAYNFGNGGNF 80 (436)
T ss_pred CCceEEEEEeCCCCCcchhhhcCCcccceEeCCcceEehHHHHHHHhCCCCEEEEEeccCHHHHHHHHhccCCCCCCccc
Confidence 57899999999999999999999999999999977999999999999999999999999999999999866544333333
Q ss_pred CCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEEE
Q 014953 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLP 165 (415)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~~ 165 (415)
....+.++...|.. .+..+++||+++++.++.++++......++|+|++||++++.|+.+++++|+++++++|+++.+
T Consensus 81 ~~~~~~i~~~~q~~--~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~~ 158 (436)
T PLN02241 81 GDGFVEVLAATQTP--GEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLP 158 (436)
T ss_pred CCCCEEEcCCcccC--CCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEEEe
Confidence 33335555444421 1123568999999999877753110013799999999999999999999999999999999988
Q ss_pred cCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCC
Q 014953 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAN 245 (415)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~~~ 245 (415)
.+.+++.+||++.+|++++|.+|.|||..+..+.+++++++|.+++.+.+..++++++|+|+|++++|..+++...+...
T Consensus 159 v~~~~~~~ygvv~~d~~~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~~~ 238 (436)
T PLN02241 159 VDESRASDFGLMKIDDTGRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTAN 238 (436)
T ss_pred cchhhcCcceEEEECCCCCEEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHhhccccc
Confidence 87655789999999988999999999977655667777777776665444456899999999999999777776544444
Q ss_pred cccccchhhhccc-ceEEEEEeCceEEecCCHHHHHHHHHhhcCCCCCCCccCCCCCccccCccCCCeeecCCccccceE
Q 014953 246 DFGSEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKIDDSKIVDSII 324 (415)
Q Consensus 246 ~~~~~~l~~l~~~-~~i~~~~~~g~~~di~t~~~y~~an~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~i~~~~i 324 (415)
+|..++++.++.. .++++|.++|||.||++|++|++|+++++...+...++.+.+++++.....+++.+.++.+.+|+|
T Consensus 239 ~~~~dil~~l~~~g~~v~~~~~~gyw~dIg~~~~y~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~s~I 318 (436)
T PLN02241 239 DFGSEIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYEANLALTKQPPKFSFYDPDAPIYTSPRFLPPSKIEDCRITDSII 318 (436)
T ss_pred chhHHHHHHHhhcCCeEEEEeeCCEEEECCCHHHHHHHHHHHhcCCchhhccCCCCcccccCCCCCCcEecCCeEEEeEE
Confidence 7778999998876 689999999999999999999999999998766556677777888877777888888888888999
Q ss_pred CCCCEEcceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEeeeEECCCeEEcCCcc
Q 014953 325 SHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKYEQLKPICHIVETKY 404 (415)
Q Consensus 325 g~~~~I~~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~~i~~~~~i~~~~~ 404 (415)
+++|+|+++.|++|+|+++|.||++|+|.+|++++++.++.+.........+..++.||++|++++++|++++.|++++.
T Consensus 319 ~~~~~I~~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~v~Ig~~~~ 398 (436)
T PLN02241 319 SHGCFLRECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARIGKNVV 398 (436)
T ss_pred cCCcEEcCeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCCCEECCCcE
Confidence 99999998889999999999999999999999999644444332222222332223566666666666666666666654
|
|
| >KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-61 Score=427.03 Aligned_cols=340 Identities=40% Similarity=0.619 Sum_probs=292.5
Q ss_pred cceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccC
Q 014953 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (415)
+.|+|+||.||.||||+|||..+|||++|++|+ |||+|++++|.++|+++|++.++|+.+++..|+.+.| +.+++
T Consensus 8 ~~vkaiILvGG~GTRLrPLT~t~pKPlVpfgn~-pmI~hqieal~nsGi~~I~la~~y~s~sl~~~~~k~y----~~~lg 82 (371)
T KOG1322|consen 8 QSVKAIILVGGYGTRLRPLTLTRPKPLVPFGNK-PMILHQIEALINSGITKIVLATQYNSESLNRHLSKAY----GKELG 82 (371)
T ss_pred cceeEEEEecCCCceeeceeccCCCcccccCcc-hhhHHHHHHHHhCCCcEEEEEEecCcHHHHHHHHHHh----hhccc
Confidence 789999999999999999999999999999999 9999999999999999999999999999999998876 33444
Q ss_pred CceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEEEc
Q 014953 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPM 166 (415)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~~~ 166 (415)
++++...|++ .-|..||+++.++.+...+ ..+|+|++||++++.++.+|+++|++++++.|++++++
T Consensus 83 ---Vei~~s~ete----plgtaGpl~laR~~L~~~~------~~~ffVLnsDvi~~~p~~~~vqfH~~~gae~TI~~t~v 149 (371)
T KOG1322|consen 83 ---VEILASTETE----PLGTAGPLALARDFLWVFE------DAPFFVLNSDVICRMPYKEMVQFHRAHGAEITIVVTKV 149 (371)
T ss_pred ---eEEEEEeccC----CCcccchHHHHHHHhhhcC------CCcEEEecCCeeecCCHHHHHHHHHhcCCceEEEEEec
Confidence 7777666653 3456677777777665443 24899999999999999999999999999999999999
Q ss_pred CCCcCCcccEEEECC-CCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCC
Q 014953 167 DDSRASDFGLMKINN-EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAN 245 (415)
Q Consensus 167 ~~~~~~~~g~v~~d~-~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~~~ 245 (415)
++ ++.||++..|+ .|+|.+|.|||+... ++-+++|+|+|++++|.+++ ..++
T Consensus 150 de--pSkyGvv~~d~~~grV~~F~EKPkd~v---------------------snkinaGiYi~~~~vL~ri~--~~pt-- 202 (371)
T KOG1322|consen 150 DE--PSKYGVVVIDEDTGRVIRFVEKPKDLV---------------------SNKINAGIYILNPEVLDRIL--LRPT-- 202 (371)
T ss_pred cC--ccccceEEEecCCCceeEehhCchhhh---------------------hccccceEEEECHHHHhHhh--hccc--
Confidence 88 89999999998 799999999999532 35677999999999998776 3233
Q ss_pred cccccchhhhcccceEEEEEeCceEEecCCHHHHHHHHHhhcCCCCCCCccCCCCCccccCccCCCeeecCCcccc--ce
Q 014953 246 DFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKIDDSKIVD--SI 323 (415)
Q Consensus 246 ~~~~~~l~~l~~~~~i~~~~~~g~~~di~t~~~y~~an~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~i~~--~~ 323 (415)
+|+.+++|..++++++++|.++|||.|||+|.||+.+...+++.. +.++..+..+|+.+.++.+.+ ..
T Consensus 203 SiekEifP~~a~~~~l~a~~l~gfWmDIGqpkdf~~g~~~Yl~s~----------~~~t~~r~~p~~~i~~nvlvd~~~~ 272 (371)
T KOG1322|consen 203 SIEKEIFPAMAEEHQLYAFDLPGFWMDIGQPKDFLTGFSFYLRSL----------PKYTSPRLLPGSKIVGNVLVDSIAS 272 (371)
T ss_pred chhhhhhhhhhhcCceEEEecCchhhhcCCHHHHHHHHHHHHhhC----------cccCCccccCCccccccEeeccccc
Confidence 589999999999999999999999999999999999987777643 334556666777776666654 44
Q ss_pred ECCCCEEcceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEe-eeEECCCeEEcCC
Q 014953 324 ISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-YEQLKPICHIVET 402 (415)
Q Consensus 324 ig~~~~I~~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~ 402 (415)
+|+||.|+. |++||++|+|+.|++|.+|.+++++.|++.+.+...+.+++ +.||.+++|+ +|+||+||.|.+.
T Consensus 273 iG~~C~Ig~----~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~--~~IG~~~~id~~a~lG~nV~V~d~ 346 (371)
T KOG1322|consen 273 IGENCSIGP----NVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWN--VPIGIWARIDKNAVLGKNVIVADE 346 (371)
T ss_pred cCCccEECC----CceECCCcEecCceEEEeeEEEccceechhHHHHhhhcccc--ccccCceEEecccEeccceEEecc
Confidence 688888884 59999999999999999999999999999999998887775 7799999998 9999999999887
Q ss_pred cccCc
Q 014953 403 KYDSS 407 (415)
Q Consensus 403 ~~~~~ 407 (415)
.++.+
T Consensus 347 ~~vn~ 351 (371)
T KOG1322|consen 347 DYVNE 351 (371)
T ss_pred ccccc
Confidence 76554
|
|
| >PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-58 Score=456.11 Aligned_cols=391 Identities=58% Similarity=0.988 Sum_probs=317.9
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCccc
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (415)
|++++|||||||+||||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++|+.+++.+|+...+.+. .+
T Consensus 1 m~~~~AVILAaG~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~~Gi~~vivv~~~~~~~i~~~l~~~~~~~---~~ 77 (429)
T PRK02862 1 MKRVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNSASLNRHISQTYNFD---GF 77 (429)
T ss_pred CCcEEEEEECCCCCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHHCCCCEEEEEecCCHHHHHHHHhcCcCcc---cc
Confidence 458999999999999999999999999999999988999999999999999999999999999999997544221 11
Q ss_pred CCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEEE
Q 014953 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLP 165 (415)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~~ 165 (415)
....+.++...+.. ....+++||++|++.+++++... ..++|+|++||++++.|+.+++++|++.++++|+++.+
T Consensus 78 ~~g~~~i~~~~~~~--~~~~~~lGTa~al~~a~~~l~~~---~~~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~ 152 (429)
T PRK02862 78 SGGFVEVLAAQQTP--ENPSWFQGTADAVRKYLWHFQEW---DVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLP 152 (429)
T ss_pred CCCEEEEeCCcccC--CCCccccCcHHHHHHHHHHHHhc---CCCEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEe
Confidence 11224444433321 11233479999999999998531 13689999999999999999999999999999999987
Q ss_pred cCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCC
Q 014953 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAN 245 (415)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~~~ 245 (415)
.+.+.+..||++.+|++++|..|.|||.......+.++.+++...+.+.....+++++|+|+|++++|..+++.. +...
T Consensus 153 ~~~~~~~~yG~i~~d~~g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~-~~~~ 231 (429)
T PRK02862 153 VDEKDASGFGLMKTDDDGRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKN-PEYT 231 (429)
T ss_pred cChhhcccceEEEECCCCcEEEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHC-CChh
Confidence 665446789999999889999999999865445566666666555555555567899999999999997776553 2334
Q ss_pred cccccchhhhcccceEEEEEeCceEEecCCHHHHHHHHHhhc-CCCCCCCccCCCCCccccCccCCCeeecCCccccceE
Q 014953 246 DFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALT-AHPPMFSFYDATKPIYTSRRNLPPSKIDDSKIVDSII 324 (415)
Q Consensus 246 ~~~~~~l~~l~~~~~i~~~~~~g~~~di~t~~~y~~an~~~l-~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~i~~~~i 324 (415)
++.+++++.+++++++++|.++|||.|+||+++|++||++++ ...+....+.+.+++++.+.+.+++.+.++.+++++|
T Consensus 232 ~~~~dil~~l~~~~~v~~~~~~g~w~digt~~~y~~an~~l~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~i 311 (429)
T PRK02862 232 DFGKEIIPEAIRDYKVQSYLFDGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTRARYLPPSKLLDATITESII 311 (429)
T ss_pred hhHHHHHHHHhccCcEEEEEeCCEEEeCCCHHHHHHHHHHHHcCCCCcccccCCCCceeccCCCCCCccccccEEEeCEE
Confidence 677899999999999999999999999999999999999998 4445555677778888888899998888888899999
Q ss_pred CCCCEEcceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEeeeEECCCeEEcCCcc
Q 014953 325 SHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKYEQLKPICHIVETKY 404 (415)
Q Consensus 325 g~~~~I~~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~~i~~~~~i~~~~~ 404 (415)
|++|+|.++.|.+|+||++|+||++++|.+|+|++++.+.+..+-......+..++.||+||.|++|+|++++.|+++..
T Consensus 312 g~~~~i~~~~i~~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~i~~~~~ 391 (429)
T PRK02862 312 AEGCIIKNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKNARIGNNVR 391 (429)
T ss_pred CCCCEECCcEEEEEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEEECCCcEECCCcE
Confidence 99999977889999999999999999999999998755544444222333333348899999999999999999999876
Q ss_pred c
Q 014953 405 D 405 (415)
Q Consensus 405 ~ 405 (415)
.
T Consensus 392 ~ 392 (429)
T PRK02862 392 I 392 (429)
T ss_pred E
Confidence 5
|
|
| >PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-57 Score=441.57 Aligned_cols=361 Identities=35% Similarity=0.638 Sum_probs=292.3
Q ss_pred cccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcc
Q 014953 5 DARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVT 84 (415)
Q Consensus 5 ~~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~ 84 (415)
.|.+|+|||||||.||||+|||.++||||+||+|+||||+|+|++|.++|+++|+|+++|..+++.+|+...|.+..
T Consensus 2 ~~~~~~avILAaG~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~~--- 78 (407)
T PRK00844 2 AMPKVLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYKSHSLDRHISQTWRLSG--- 78 (407)
T ss_pred CCCceEEEEECCCCCCccchhhcCCcccceeeCCcceEhHHHHHHHHHCCCCEEEEEeccCHHHHHHHHHhCcCccc---
Confidence 46789999999999999999999999999999998789999999999999999999999999999999975442211
Q ss_pred cCCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEE
Q 014953 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCL 164 (415)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~ 164 (415)
....++...+..+. .+..+++||++|++.+++++.+. ..++|+|++||++++.++.+++++|.++++++|+++.
T Consensus 79 ~~~~~~~~~~~~~~---~~~~~~lGta~al~~a~~~i~~~---~~~~~lv~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~ 152 (407)
T PRK00844 79 LLGNYITPVPAQQR---LGKRWYLGSADAIYQSLNLIEDE---DPDYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAI 152 (407)
T ss_pred cCCCeEEECCcccC---CCCCcccCCHHHHHHHHHHHHhc---CCCEEEEecCCEEEcCCHHHHHHHHHhcCCcEEEEEE
Confidence 11111221111111 12345689999999999998531 1256999999999999999999999999999999987
Q ss_pred EcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhC---
Q 014953 165 PMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF--- 241 (415)
Q Consensus 165 ~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~--- 241 (415)
+.+.+.+..||++.+|++|+|..|.|||..+.... ....++++++|+|+|++++|..+++...
T Consensus 153 ~~~~~~~~~~Gvv~~d~~g~v~~~~eKp~~~~~~~--------------~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~ 218 (407)
T PRK00844 153 RVPREEASAFGVIEVDPDGRIRGFLEKPADPPGLP--------------DDPDEALASMGNYVFTTDALVDALRRDAADE 218 (407)
T ss_pred ecchHHcccCCEEEECCCCCEEEEEECCCCccccc--------------CCCCCcEEEeEEEEEeHHHHHHHHHHhhcCC
Confidence 76544468899999998899999999987532100 0012468999999999999866665421
Q ss_pred CCCCcccccchhhhcccceEEEEEe------------CceEEecCCHHHHHHHHHhhcCCCCCCCccCCCCCccccCccC
Q 014953 242 PTANDFGSEIIPASANEQFLKAYLF------------NDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNL 309 (415)
Q Consensus 242 ~~~~~~~~~~l~~l~~~~~i~~~~~------------~g~~~di~t~~~y~~an~~~l~~~~~~~~~~~~~~~~~~~~i~ 309 (415)
....++..|+++.+++++++++|.+ +|||.||+++++|++||+++|+..+...++.+.+++.+.....
T Consensus 219 ~~~~~~~~dii~~l~~~~~v~~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~~~~~~~~~~~~~~~~~~~~~ 298 (407)
T PRK00844 219 DSSHDMGGDIIPRLVERGRAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVHPVFNLYNREWPIYTSSPNL 298 (407)
T ss_pred cccccchhhHHHHHhccCeEEEEEcccccccccccCCCCEEEECCCHHHHHHHHHHHhCCCCccccCCCCCcccccCCCC
Confidence 1234667899999999899999976 5999999999999999999998765555566666777666666
Q ss_pred CCeee-cCC----ccccceECCCCEEcceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCC
Q 014953 310 PPSKI-DDS----KIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGE 384 (415)
Q Consensus 310 ~~~~i-~~~----~i~~~~ig~~~~I~~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~ 384 (415)
+++.+ .+. .+.+++||++|.|+++.|++|+||++|+|+++|+|.+|+|+++ |.||+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~ig~~~~I~~~~i~~svIg~~~~I~~~~~i~~sii~~~-------------------~~i~~ 359 (407)
T PRK00844 299 PPAKFVDGGGRVGSAQDSLVSAGSIISGATVRNSVLSPNVVVESGAEVEDSVLMDG-------------------VRIGR 359 (407)
T ss_pred CCceEecCCCccceEEeCEEcCCCEECCeeeEcCEECCCCEECCCCEEeeeEECCC-------------------CEECC
Confidence 77666 332 4678999999999888999999999999999999999999999 89999
Q ss_pred CCEEeeeEECCCeEEcCCcccCc
Q 014953 385 NTKIKYEQLKPICHIVETKYDSS 407 (415)
Q Consensus 385 ~~~i~~~~i~~~~~i~~~~~~~~ 407 (415)
+|.|.+|+|+++++|++++....
T Consensus 360 ~~~i~~~ii~~~~~i~~~~~i~~ 382 (407)
T PRK00844 360 GAVVRRAILDKNVVVPPGATIGV 382 (407)
T ss_pred CCEEEeeEECCCCEECCCCEECC
Confidence 99999999999999999987655
|
|
| >PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-56 Score=436.44 Aligned_cols=365 Identities=35% Similarity=0.587 Sum_probs=287.6
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCccc
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (415)
|++|+|||||||+||||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++|+.+++.+|+.....++....
T Consensus 1 ~~~m~avILAaG~GtRl~plT~~~PK~llpv~gk~pli~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~- 79 (380)
T PRK05293 1 KKEMLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQPLELNNHIGIGSPWDLDRI- 79 (380)
T ss_pred CCcEEEEEECCCCCcccchhhcCCccceeeeCCceeehhHHHHHHHhCCCCEEEEEecCCHHHHHHHHhCCCcccccCC-
Confidence 5789999999999999999999999999999999789999999999999999999999999999999853221111110
Q ss_pred CCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEEE
Q 014953 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLP 165 (415)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~~ 165 (415)
...+.+++..+.. ..++|++||++||+.++++++.. ..++|+|++||++++.++.+++++|+++++++|+++..
T Consensus 80 -~~~~~i~~~~~~~--~~~~~~~Gta~al~~a~~~l~~~---~~~~~lV~~gD~l~~~d~~~ll~~h~~~~~~~tl~~~~ 153 (380)
T PRK05293 80 -NGGVTILPPYSES--EGGKWYKGTAHAIYQNIDYIDQY---DPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIE 153 (380)
T ss_pred -CCCEEEeCCcccC--CCCcccCCcHHHHHHHHHHHHhC---CCCEEEEecCCEEEcCCHHHHHHHHHhcCCCEEEEEEE
Confidence 0113444222211 12345689999999999998531 13689999999999999999999999988989988877
Q ss_pred cCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCC---
Q 014953 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP--- 242 (415)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~--- 242 (415)
.+...+..||++.+|++++|.++.|||..+. +++.++|+|+|++++|..+++....
T Consensus 154 ~~~~~~~~yG~v~~d~~g~V~~~~eKp~~~~---------------------~~~~~~Giyi~~~~~l~~~l~~~~~~~~ 212 (380)
T PRK05293 154 VPWEEASRFGIMNTDENMRIVEFEEKPKNPK---------------------SNLASMGIYIFNWKRLKEYLIEDEKNPN 212 (380)
T ss_pred cchhhccccCEEEECCCCcEEEEEeCCCCCC---------------------cceeeeEEEEEcHHHHHHHHHHHhhcCC
Confidence 6544578899999988899999999986432 3678999999999998777654321
Q ss_pred CCCcccccchhhhccc-ceEEEEEeCceEEecCCHHHHHHHHHhhcCCCCCCCccCCCCCccccCccCCCeee-cCCccc
Q 014953 243 TANDFGSEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKI-DDSKIV 320 (415)
Q Consensus 243 ~~~~~~~~~l~~l~~~-~~i~~~~~~g~~~di~t~~~y~~an~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~i-~~~~i~ 320 (415)
...+|..++++.++++ .++++|.++|+|.|+|++++|++||+.++...+...++++.+.+.+.+.+.++++| +++.+.
T Consensus 213 ~~~~~~~d~i~~l~~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~ 292 (380)
T PRK05293 213 SSHDFGKNVIPLYLEEGEKLYAYPFKGYWKDVGTIESLWEANMELLRPENPLNLFDRNWRIYSVNPNLPPQYIAENAKVK 292 (380)
T ss_pred chhhhHHHHHHHHhhcCCeEEEEEeCCEEEeCCCHHHHHHHHHHHcCCCchhhhcCCCCceecCCcCCCCCEECCCCEEe
Confidence 2345667899998875 68999999999999999999999999999877777777888888888889999999 788899
Q ss_pred cceECCCCEEcceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHH-hhhhCCCcceEeCCCCEEee-----eEEC
Q 014953 321 DSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVA-SLLAEGRVPVGIGENTKIKY-----EQLK 394 (415)
Q Consensus 321 ~~~ig~~~~I~~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~-~~~~~~~~~~~Ig~~~~i~~-----~~i~ 394 (415)
++.||++|+|+ +.+.+|+||++|+||++|+|.+|+|++++.|+.++.+. +.++++ +.||++|++.+ .+||
T Consensus 293 ~~~Ig~~~~I~-~~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~---~~i~~~~~i~~~~~~~~~ig 368 (380)
T PRK05293 293 NSLVVEGCVVY-GTVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGEN---AVIGDGVIIGGGKEVITVIG 368 (380)
T ss_pred cCEECCCCEEc-ceecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCC---CEECCCCEEcCCCceeEEEe
Confidence 99999999997 46789999999999999999999999995555554433 233444 44455554443 4445
Q ss_pred CCeEEcCC
Q 014953 395 PICHIVET 402 (415)
Q Consensus 395 ~~~~i~~~ 402 (415)
++++|+++
T Consensus 369 ~~~~~~~~ 376 (380)
T PRK05293 369 ENEVIGVG 376 (380)
T ss_pred CCCCCCCC
Confidence 55444444
|
|
| >PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-56 Score=435.15 Aligned_cols=361 Identities=37% Similarity=0.646 Sum_probs=292.8
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCccc
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (415)
+.+++|||||||.||||+|||..+||||+||+|+||||+|++++|.++|+++|+|+++|+.+++.+|+.+.|.+.. ..
T Consensus 13 ~~~~~aVILAaG~GtRl~pLT~~~PK~llpv~gkp~lI~~~l~~l~~~Gi~~i~vv~~~~~~~i~~~~~~~~~~~~-~~- 90 (425)
T PRK00725 13 TRDTLALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYKAHSLIRHIQRGWSFFR-EE- 90 (425)
T ss_pred hcceEEEEECCCCCCcchhhhCCCcceeEEECCEEEEhHHHHHHHHHCCCCeEEEEecCCHHHHHHHHHhhhcccc-cC-
Confidence 3779999999999999999999999999999999449999999999999999999999999999999975442110 00
Q ss_pred CCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEEE
Q 014953 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLP 165 (415)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~~ 165 (415)
....+.++...+.. ..+++++||++|++.++++++.. ..++|+|++||++++.++.+++++|+++++++|+++.+
T Consensus 91 ~~~~i~i~~~~~~~--~~e~~~lGTa~al~~a~~~l~~~---~~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~~~~ 165 (425)
T PRK00725 91 LGEFVDLLPAQQRV--DEENWYRGTADAVYQNLDIIRRY---DPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACLE 165 (425)
T ss_pred CCCeEEEeCCcccC--CCCccccCcHHHHHHHHHHHHhc---CCCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEEEEe
Confidence 01234454433321 12345689999999999998631 13689999999999999999999999999999999887
Q ss_pred cCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhC---C
Q 014953 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF---P 242 (415)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~---~ 242 (415)
.+.+.+..||++.+|++++|..|.|||..+.. + +. ...++++++|+|+|++++|..++++.. .
T Consensus 166 ~~~~~~~~yG~v~~d~~~~V~~~~EKp~~~~~--~----------~~--~~~~~l~n~GIYi~~~~~L~~~L~~~~~~~~ 231 (425)
T PRK00725 166 VPREEASAFGVMAVDENDRITAFVEKPANPPA--M----------PG--DPDKSLASMGIYVFNADYLYELLEEDAEDPN 231 (425)
T ss_pred cchhhcccceEEEECCCCCEEEEEECCCCccc--c----------cc--CccceEEEeeEEEEeHHHHHHHHHHhhcCCC
Confidence 75445789999999988999999999864321 0 00 012468999999999999876665421 1
Q ss_pred CCCcccccchhhhcccceEEEEEeC-----------ceEEecCCHHHHHHHHHhhcCCCCCCCccCCCCCccccCccCCC
Q 014953 243 TANDFGSEIIPASANEQFLKAYLFN-----------DYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPP 311 (415)
Q Consensus 243 ~~~~~~~~~l~~l~~~~~i~~~~~~-----------g~~~di~t~~~y~~an~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 311 (415)
...+|..|+++.+++++++++|.++ +||.||+++++|++||++++...+...++...+++++.....++
T Consensus 232 ~~~~~~~dii~~l~~~~~v~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~~~~~~~~~~~~~~i~t~~~~~~~ 311 (425)
T PRK00725 232 SSHDFGKDIIPKIVEEGKVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVTPELDLYDRNWPIWTYQEQLPP 311 (425)
T ss_pred ccchhhHHHHHHHhccCcEEEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcCCCchhhccCCCCccccCCCCCCC
Confidence 2346778999999999999999985 69999999999999999999876655566666677776666677
Q ss_pred eee-c---C--CccccceECCCCEEcceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCC
Q 014953 312 SKI-D---D--SKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGEN 385 (415)
Q Consensus 312 ~~i-~---~--~~i~~~~ig~~~~I~~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~ 385 (415)
+.+ . + +.+.+|+||+||+|+++.|++|+||++|.||++|+|.+|+||++ |.||++
T Consensus 312 ~~~~~~~~~~~~~~~~s~i~~~~~i~~~~i~~svi~~~~~I~~~~~i~~svi~~~-------------------~~I~~~ 372 (425)
T PRK00725 312 AKFVFDRSGRRGMAINSLVSGGCIISGAVVRRSVLFSRVRVNSFSNVEDSVLLPD-------------------VNVGRS 372 (425)
T ss_pred CeEeccCCCCcceEEeCEEcCCcEEcCccccCCEECCCCEECCCCEEeeeEEcCC-------------------CEECCC
Confidence 655 1 2 34679999999999888999999999999999999999999999 899999
Q ss_pred CEEeeeEECCCeEEcCCcccC
Q 014953 386 TKIKYEQLKPICHIVETKYDS 406 (415)
Q Consensus 386 ~~i~~~~i~~~~~i~~~~~~~ 406 (415)
|+|.+|+|+++++|++++...
T Consensus 373 ~~i~~~ii~~~~~i~~~~~i~ 393 (425)
T PRK00725 373 CRLRRCVIDRGCVIPEGMVIG 393 (425)
T ss_pred CEEeeEEECCCCEECCCCEEC
Confidence 999999999999999987654
|
|
| >TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-54 Score=416.21 Aligned_cols=350 Identities=23% Similarity=0.395 Sum_probs=272.3
Q ss_pred cceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChh-HHHHHHHhhccCCCCccc
Q 014953 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSA-SLNRHLARAYNYGSGVTF 85 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~-~i~~~l~~~~~~~~~~~~ 85 (415)
.+|+|||||+|+|+||+|||.++||||+||+||||||+|++++|.++|+++|+|+++|+.+ ++.+|+.+...++.....
T Consensus 1 ~~~~avila~g~gtRL~PLT~~~PKpLlpV~gk~PlIe~~l~~L~~~Gi~~I~iv~~~~~~~~I~~~l~~~~~~~~~~~~ 80 (369)
T TIGR02092 1 NKMSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKERQSLFDHLGSGREWDLHRKR 80 (369)
T ss_pred CcEEEEEECCCCCccccccccCCcccccccCCeeeEEEEEhhhhhccCCCEEEEEeCCCcHHHHHHHHhCCCCCCccccc
Confidence 3689999999999999999999999999999997799999999999999999999999887 999999642212111110
Q ss_pred CCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEEE
Q 014953 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLP 165 (415)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~~ 165 (415)
. .....+ .++.. .+..|++++++.++++++.. ..++|+|++||++++.||.+++++|+++++++|+++.+
T Consensus 81 ~-~~~~~~--~~e~~----~l~tg~~~a~~~a~~~l~~~---~~~~~lvlnGD~l~~~dl~~ll~~h~~~~a~~tl~~~~ 150 (369)
T TIGR02092 81 D-GLFVFP--YNDRD----DLSEGGKRYFSQNLEFLKRS---TSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKK 150 (369)
T ss_pred C-cEEEEe--ccCCC----CcccChHHHHHHHHHHHHhC---CCCEEEEECCCEEEecCHHHHHHHHHHcCCCEEEEEEe
Confidence 0 001111 12211 11136777898898888420 13789999999999999999999999999999999988
Q ss_pred cCCCcCCccc-EEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC-
Q 014953 166 MDDSRASDFG-LMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT- 243 (415)
Q Consensus 166 ~~~~~~~~~g-~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~- 243 (415)
.+...+..|+ ++..++++++..+.+++.... ...+++|+|+|++++|..+++...+.
T Consensus 151 v~~~~~~~~g~vv~~~~~g~v~~~~~~~~~~~---------------------~~~~~~Giyi~~~~~l~~~l~~~~~~~ 209 (369)
T TIGR02092 151 VKPADASEYDTILRFDESGKVKSIGQNLNPEE---------------------EENISLDIYIVSTDLLIELLYECIQRG 209 (369)
T ss_pred cCHHHccccCcEEEEcCCCCEEeccccCCCCC---------------------cceeeeeEEEEEHHHHHHHHHHHhhcC
Confidence 7643456774 556776778877744332211 13568999999999886666543322
Q ss_pred CCcccccchhhhcccceEEEEEeCceEEecCCHHHHHHHHHhhcCCCCCCCcc-CCCCCccccCccCCCeee-cCCcccc
Q 014953 244 ANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFY-DATKPIYTSRRNLPPSKI-DDSKIVD 321 (415)
Q Consensus 244 ~~~~~~~~l~~l~~~~~i~~~~~~g~~~di~t~~~y~~an~~~l~~~~~~~~~-~~~~~~~~~~~i~~~~~i-~~~~i~~ 321 (415)
..++..++++.++++.++++|..++||.||||+++|++||+++++++.....+ ...+.+.....+.+|+++ +++.|.+
T Consensus 210 ~~~~~~d~i~~~~~~~~v~~~~~~g~w~dIgt~~~l~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~i~~ 289 (369)
T TIGR02092 210 KLTSLEELIRENLKELNINAYEYTGYLANINSVKSYYKANMDLLDPQNFQSLFYSSQGPIYTKVKDEPPTYYAENSKVEN 289 (369)
T ss_pred ccccHHHHHHHHhccCcEEEEecCCceeEcCCHHHHHHHHHHHhCCcchhhhcCCCCCceeeccCCCCCcEEcCCCEEEE
Confidence 22345678888888889999999999999999999999999999876432222 222344444445688999 8889999
Q ss_pred ceECCCCEEcceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEeeeEECCCeEEcC
Q 014953 322 SIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKYEQLKPICHIVE 401 (415)
Q Consensus 322 ~~ig~~~~I~~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~~i~~~~~i~~ 401 (415)
|+||+||+|+ +.|++|+||++|.|+++|+|.+|+++++ |.||++|.+++|+||++++|++
T Consensus 290 ~~Ig~~~~i~-~~v~~s~i~~~~~I~~~~~i~~sii~~~-------------------~~I~~~~~i~~~ii~~~~~v~~ 349 (369)
T TIGR02092 290 SLVANGCIIE-GKVENSILSRGVHVGKDALIKNCIIMQR-------------------TVIGEGAHLENVIIDKDVVIEP 349 (369)
T ss_pred eEEcCCCEEe-eEEeCCEECCCCEECCCCEEEeeEEeCC-------------------CEECCCCEEEEEEECCCCEECC
Confidence 9999999997 6799999999999999999999999999 8999999999999999999999
Q ss_pred CcccCc
Q 014953 402 TKYDSS 407 (415)
Q Consensus 402 ~~~~~~ 407 (415)
+.....
T Consensus 350 ~~~~~~ 355 (369)
T TIGR02092 350 NVKIAG 355 (369)
T ss_pred CCEeCC
Confidence 886543
|
This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis. |
| >TIGR02091 glgC glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-52 Score=403.97 Aligned_cols=354 Identities=46% Similarity=0.805 Sum_probs=282.8
Q ss_pred EEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCceE
Q 014953 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (415)
Q Consensus 11 aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 90 (415)
|||||||+|+||+|||.++||||+||+|+||||+|++++|.++|+++|+|+++++.+++.+|+...|.+.. .....+
T Consensus 1 aiILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~---~~~~~~ 77 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHSLNRHIQRGWDFDG---FIDGFV 77 (361)
T ss_pred CEEeCCCCCCccchhhhCCccccceecceeeEeeehhhhhhhcCCceEEEEeccChHHHHHHHHhccCccC---ccCCCE
Confidence 69999999999999999999999999999679999999999999999999999999999999975432110 001124
Q ss_pred EEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEEEcCCCc
Q 014953 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSR 170 (415)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~~~~~~~ 170 (415)
++++..+. ...+.+++||+++++.++.++++. ..++|++++||++++.++.++++.|+++++++++++.+.+...
T Consensus 78 ~~~~~~~~--~~~~~~~~Gt~~al~~a~~~~~~~---~~~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~ 152 (361)
T TIGR02091 78 TLLPAQQR--ESGTDWYQGTADAVYQNLDLIEDY---DPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKE 152 (361)
T ss_pred EEeCCccc--CCCCccccCcHHHHHHHHHHHHhc---CCCEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChHh
Confidence 44432221 112345689999999999988531 1368999999999999999999999988888898888776545
Q ss_pred CCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCC---CCCcc
Q 014953 171 ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP---TANDF 247 (415)
Q Consensus 171 ~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~---~~~~~ 247 (415)
+..||++.+|++++|..+.|||..+.... . ....+++++|+|+|++++|..+++.... ...++
T Consensus 153 ~~~~g~v~~d~~~~v~~~~ekp~~~~~~~------------~--~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~ 218 (361)
T TIGR02091 153 ASRFGVMQVDEDGRIVDFEEKPANPPSIP------------G--MPDFALASMGIYIFDKDVLKELLEEDADDPESSHDF 218 (361)
T ss_pred cccccEEEECCCCCEEEEEECCCCccccc------------c--cccccEEeeeEEEEcHHHHHHHHHHHhhcCCccccc
Confidence 67899999988889999999985432100 0 0012479999999999998666654321 23456
Q ss_pred cccchhhhcccceEEEEEeCceEEecCCHHHHHHHHHhhcCCCCCCCccCCCCCcccc-CccCCCeee-cCCccccceEC
Q 014953 248 GSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTS-RRNLPPSKI-DDSKIVDSIIS 325 (415)
Q Consensus 248 ~~~~l~~l~~~~~i~~~~~~g~~~di~t~~~y~~an~~~l~~~~~~~~~~~~~~~~~~-~~i~~~~~i-~~~~i~~~~ig 325 (415)
..++++.+++++++++|.++++|.||+|+++|++|+++++++.+....+...+.+.+. ..+.+++++ +++.+.+++||
T Consensus 219 ~~d~l~~l~~~~~v~~~~~~~~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig 298 (361)
T TIGR02091 219 GKDIIPRALEEGSVQAYLFSGYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEFLPPAKFVDSDAQVVDSLVS 298 (361)
T ss_pred HHHHHHHHhhcCceEEEeeCCEEEECCCHHHHHHHHHHHhCCCchhhccccCCceecCCCCCCCceEecCCCEEECCEEC
Confidence 6789999999999999999999999999999999999999876433333333444332 345667777 56678899999
Q ss_pred CCCEEcceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEeeeEECCCeEEcCCccc
Q 014953 326 HGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKYEQLKPICHIVETKYD 405 (415)
Q Consensus 326 ~~~~I~~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~~i~~~~~i~~~~~~ 405 (415)
++|+|+++.|.+|+||++|+|+++|+|.+|+++++ +.||++|+|++|+||++++|++++..
T Consensus 299 ~~~~I~~~~v~~s~i~~~~~I~~~~~i~~sii~~~-------------------~~v~~~~~l~~~ivg~~~~i~~~~~i 359 (361)
T TIGR02091 299 EGCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGD-------------------VGIGRGAVIRNAIIDKNVRIGEGVVI 359 (361)
T ss_pred CCCEECCCEEEccEECCCCEECCCCEEeeeEEeCC-------------------CEECCCCEEeeeEECCCCEECCCCEe
Confidence 99999966899999999999999999999999999 89999999999999999999998754
|
This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals. |
| >COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-53 Score=403.90 Aligned_cols=311 Identities=28% Similarity=0.419 Sum_probs=248.2
Q ss_pred ceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCC
Q 014953 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGD 87 (415)
Q Consensus 8 ~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~ 87 (415)
+|+|||||||+||||+|||.++||||+||+|+ |||+|+|++|+++|+++++++++|..+++.+|+.+.+.++..
T Consensus 1 ~mkavILagG~GtRLrPlT~~~PKPllpI~gk-Pii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d~~~~~~~----- 74 (358)
T COG1208 1 PMKAVILAGGYGTRLRPLTDDRPKPLLPIAGK-PLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGDGEGLGVR----- 74 (358)
T ss_pred CceEEEEeCCccccccccccCCCcccceeCCc-cHHHHHHHHHHHCCCcEEEEEeccchHHHHHHHhcccccCCc-----
Confidence 58999999999999999999999999999999 999999999999999999999999999999999765322211
Q ss_pred ceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEEEcC
Q 014953 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMD 167 (415)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~~~~ 167 (415)
+.++.... ++||+++|+.+.+++. .++|++++||++++.|+.+++++|+++++.+|+......
T Consensus 75 --I~y~~e~~---------~lGTag~l~~a~~~l~------~~~f~v~~GDv~~~~dl~~l~~~~~~~~~~~~~~~~~~~ 137 (358)
T COG1208 75 --ITYVVEKE---------PLGTAGALKNALDLLG------GDDFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRVL 137 (358)
T ss_pred --eEEEecCC---------cCccHHHHHHHHHhcC------CCcEEEEECCeeeccCHHHHHHHHHhccCccEEEEEecC
Confidence 33322222 3799999999999885 389999999999999999999999999888899888887
Q ss_pred CCcCCcccEEEECCC-CCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCCc
Q 014953 168 DSRASDFGLMKINNE-GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAND 246 (415)
Q Consensus 168 ~~~~~~~g~v~~d~~-~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~~~~ 246 (415)
++ ..||++..+++ ++|.+|.|||..... .++++++|+|+|++++|+ .++. ....+
T Consensus 138 ~~--~~~Gvv~~~~~~~~v~~f~ekp~~~~~-------------------~~~~in~Giyi~~~~v~~-~i~~--~~~~~ 193 (358)
T COG1208 138 DP--SEFGVVETDDGDGRVVEFREKPGPEEP-------------------PSNLINAGIYIFDPEVFD-YIEK--GERFD 193 (358)
T ss_pred CC--CcCceEEecCCCceEEEEEecCCCCCC-------------------CCceEEeEEEEECHHHhh-hccc--CCccc
Confidence 73 78999998744 599999999954110 247899999999999997 3332 23456
Q ss_pred ccccchhhhcccce-EEEEEeCceEEecCCHHHHHHHHHhhcCCCCCCCccCCC--------CCccccCccCCCeee-cC
Q 014953 247 FGSEIIPASANEQF-LKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDAT--------KPIYTSRRNLPPSKI-DD 316 (415)
Q Consensus 247 ~~~~~l~~l~~~~~-i~~~~~~g~~~di~t~~~y~~an~~~l~~~~~~~~~~~~--------~~~~~~~~i~~~~~i-~~ 316 (415)
|..++++.+++.++ +++|.++|+|+||++|++|.+|++.+++......+.... ..+...+.+++++.+ .+
T Consensus 194 ~~~~~~~~l~~~~~~v~~~~~~g~W~dig~p~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gp~~ig~~~~i~~~ 273 (358)
T COG1208 194 FEEELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLRGDGKSPLGPIEEPVVIIRSAYIIGPVVIGPGAKIGPG 273 (358)
T ss_pred chhhHHHHHHhCCCcEEEEEeCCeEEeCCCHHHHHHHHHHHHhcccccccccccccccccccceEeCCEEECCCCEECCC
Confidence 77789999999887 999999999999999999999999998644221110000 222333444444444 34
Q ss_pred Cccc-cceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccc
Q 014953 317 SKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYET 365 (415)
Q Consensus 317 ~~i~-~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~ 365 (415)
+.|. +++||+||+|+ ++.|++|+|+++|.|++++.|.+|||+.++.|++
T Consensus 274 ~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~sIi~~~~~ig~ 324 (358)
T COG1208 274 ALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGENCKIGA 324 (358)
T ss_pred CEECCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEeeeEEcCCcEECC
Confidence 4444 58888888888 5788888999999998888888898888876666
|
|
| >TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=370.31 Aligned_cols=326 Identities=21% Similarity=0.321 Sum_probs=249.4
Q ss_pred EEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEccc-ChhHHHHHHHhhccCCCCcccCCc
Q 014953 10 AAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQY-NSASLNRHLARAYNYGSGVTFGDG 88 (415)
Q Consensus 10 ~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~-~~~~i~~~l~~~~~~~~~~~~~~~ 88 (415)
+|||||||.|+||+|+|..+||+|+||+|+ |||+|++++|.++|+++|++++++ +.+++.+|+... ..|+..
T Consensus 1 kaiIlAaG~gtRl~plt~~~pK~l~pv~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~i~~~~~~~------~~~~~~ 73 (353)
T TIGR01208 1 KALILAAGKGTRLRPLTFTRPKQLIPVANK-PILQYAIEDLAEAGITDIGIVVGPVTGEEIKEIVGEG------ERFGAK 73 (353)
T ss_pred CEEEECCcCcCccCccccCCCccccEECCE-eHHHHHHHHHHHCCCCEEEEEeCCCCHHHHHHHHhcc------cccCce
Confidence 699999999999999999999999999999 999999999999999999999999 888999988542 223322
Q ss_pred eEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEEEcCC
Q 014953 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDD 168 (415)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~~~~~ 168 (415)
+.++. +. +..|++++++.++.++. .++|++++||++++.++.+++++|.++++++|+++.+.++
T Consensus 74 -~~~~~--~~-------~~~G~~~al~~a~~~l~------~~~~li~~gD~~~~~~l~~l~~~~~~~~~d~ti~~~~~~~ 137 (353)
T TIGR01208 74 -ITYIV--QG-------EPLGLAHAVYTARDFLG------DDDFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVRD 137 (353)
T ss_pred -EEEEE--CC-------CCCCHHHHHHHHHHhcC------CCCEEEEECCeecCccHHHHHHHHHhcCCCcEEEEEECCC
Confidence 22221 21 13699999999999885 3689999999999999999999999999999999888765
Q ss_pred CcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC--CCc
Q 014953 169 SRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT--AND 246 (415)
Q Consensus 169 ~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~--~~~ 246 (415)
+..|+++..+++++|.++.|||..+. +++.++|+|+|++.+++ .++...+. ...
T Consensus 138 --~~~~g~~~~~~~~~v~~~~ekp~~~~---------------------~~~~~~Giy~~~~~l~~-~l~~~~~~~~~e~ 193 (353)
T TIGR01208 138 --PTAFGVAVLEDGKRILKLVEKPKEPP---------------------SNLAVVGLYMFRPLIFE-AIKNIKPSWRGEL 193 (353)
T ss_pred --hhhCeEEEEcCCCcEEEEEECCCCCC---------------------ccceEEEEEEECHHHHH-HHHhcCCCCCCcE
Confidence 57799888876678999999987542 36789999999997775 44433221 223
Q ss_pred ccccchhhhccc-ceEEEEEeCceEEecCCHHHHHHHHHhhcCCCCCCCccCCCCCccccCccCCCeee-cCCccccceE
Q 014953 247 FGSEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKI-DDSKIVDSII 324 (415)
Q Consensus 247 ~~~~~l~~l~~~-~~i~~~~~~g~~~di~t~~~y~~an~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~i-~~~~i~~~~i 324 (415)
...++++.++++ .++++|.++|||.||+||+||++||+.++.+... .+. .+.+.+.+.+++++ +++.|.+++|
T Consensus 194 ~l~d~l~~l~~~g~~v~~~~~~g~w~digt~~dl~~a~~~ll~~~~~-~~~----~i~~~~~i~~~~~i~~~~~i~~~~i 268 (353)
T TIGR01208 194 EITDAIQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLILDEVER-EVQ----GVDDESKIRGRVVVGEGAKIVNSVI 268 (353)
T ss_pred EHHHHHHHHHHcCCeEEEEEeCcEEEeCCCHHHHHHHHHHHHhhccc-ccC----CcCCCCEEcCCEEECCCCEEeCCEE
Confidence 346788888866 4799999999999999999999999999975321 111 13445556666777 6666666666
Q ss_pred CCCCEEc-ceEEeeeEEccCcEECCCcEEe-----ecEEeCCccccchhHHHhhhhCCCcceEeCCC-CEEeeeEECCCe
Q 014953 325 SHGSFIT-SSFIEHSVVGIRSRINANVHLK-----DTMMLGADFYETDAEVASLLAEGRVPVGIGEN-TKIKYEQLKPIC 397 (415)
Q Consensus 325 g~~~~I~-~~~i~~svig~~~~ig~~~~i~-----~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~-~~i~~~~i~~~~ 397 (415)
+++|.|+ +|.|.+|+|+++|+||++|+|. +|+|+++ +.|+.+ +++.++++++++
T Consensus 269 ~~~~~Ig~~~~I~~~~i~~~~~Ig~~~~i~~~~i~~s~i~~~-------------------~~i~~~~~~~~~~ii~~~~ 329 (353)
T TIGR01208 269 RGPAVIGEDCIIENSYIGPYTSIGEGVVIRDAEVEHSIVLDE-------------------SVIEGVQARIVDSVIGKKV 329 (353)
T ss_pred ECCcEECCCCEEcCcEECCCCEECCCCEEeeeEEEeeEEcCC-------------------CEEcCCcceeecCEEcCCC
Confidence 5556666 4555566666666666666654 6666666 677776 377778888888
Q ss_pred EEcCCcccC
Q 014953 398 HIVETKYDS 406 (415)
Q Consensus 398 ~i~~~~~~~ 406 (415)
+|+++++..
T Consensus 330 ~i~~~~~~~ 338 (353)
T TIGR01208 330 RIKGNRRRP 338 (353)
T ss_pred EECCCcccc
Confidence 888887654
|
Alternate name: dTDP-D-glucose synthase |
| >KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-46 Score=327.46 Aligned_cols=351 Identities=23% Similarity=0.308 Sum_probs=257.4
Q ss_pred cceEEEEEcCC--CCCcccccccCCcccceeeCCcceeehhehhhhhc-cCCcEEEEEcccChhHHHHHHHhhccCCCCc
Q 014953 7 RTVAAVILGGG--AGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCIN-SGINKVYILTQYNSASLNRHLARAYNYGSGV 83 (415)
Q Consensus 7 ~~~~aVILAaG--~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~-~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~ 83 (415)
++.+||||.|| +|||||||+.+.||||+|++|+ |||+|-++++.+ .|..+|+++.-|..+.+.+|+..-. .
T Consensus 1 ~~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpiaG~-pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~-----~ 74 (407)
T KOG1460|consen 1 MKVKAVILVGGPQKGTRFRPLSFNVPKPLFPIAGV-PMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQ-----Q 74 (407)
T ss_pred CceEEEEEecCCCCCccccccccCCCCCccccCCc-chhhhhHHHHhcccchhheeEEecccchHHHHHHHHHH-----h
Confidence 46799999999 6999999999999999999999 999999999998 6899999999999888888876432 1
Q ss_pred ccCCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEE
Q 014953 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISC 163 (415)
Q Consensus 84 ~~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~ 163 (415)
+|.. .+.++..+ .++||++.|++.++.|-. ...+.|+|+++|+.++++|.+|++.|+..+..+|++.
T Consensus 75 e~~~-pvrYL~E~---------~plGtaGgLyhFrdqIl~---g~ps~vFvlnaDVCcsfPl~~ml~ahr~~g~~~tll~ 141 (407)
T KOG1460|consen 75 EFKV-PVRYLRED---------NPLGTAGGLYHFRDQILA---GSPSAVFVLNADVCCSFPLQDMLEAHRRYGGIGTLLV 141 (407)
T ss_pred hccc-chhhhccC---------CCCCcccceeehhhHHhc---CCCceEEEEecceecCCcHHHHHHHHhhcCCceEEEE
Confidence 2221 13444332 248999999999987743 2368999999999999999999999999999999999
Q ss_pred EEcCCCcCCcccEEEEC-CCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHh---h
Q 014953 164 LPMDDSRASDFGLMKIN-NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLR---W 239 (415)
Q Consensus 164 ~~~~~~~~~~~g~v~~d-~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~---~ 239 (415)
++...+++.+||.+..| ..|+|.++.|||.... ++.++||+|+|++++|+.+-+ .
T Consensus 142 tkvs~e~asnfG~lV~dP~t~evlHYveKPsTfv---------------------Sd~InCGvYlF~~eif~~i~~v~~q 200 (407)
T KOG1460|consen 142 TKVSREQASNFGCLVEDPSTGEVLHYVEKPSTFV---------------------SDIINCGVYLFTPEIFNAIAEVYRQ 200 (407)
T ss_pred EEecHhHhhccCeeeecCCcCceEEeecCcchhh---------------------hcccceeEEEecHHHHHHHHHHHHH
Confidence 99998888999999998 4699999999998653 588999999999998864321 1
Q ss_pred h---------C----C---CCCcccccchhhhcccceEEEEEeCceEEecCCHHHHHHHHHhhcCCCC---CCCcc-C--
Q 014953 240 R---------F----P---TANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPP---MFSFY-D-- 297 (415)
Q Consensus 240 ~---------~----~---~~~~~~~~~l~~l~~~~~i~~~~~~g~~~di~t~~~y~~an~~~l~~~~---~~~~~-~-- 297 (415)
. . + +.-.+.+|+++.|+..+++++|..+++|..|.|+..-+.||+.+|+... ...+. .
T Consensus 201 ~~~~~~~~~~~~~l~~g~~d~irLeqDvlspLag~k~lY~y~t~~fW~QiKtagsal~as~lYLs~yk~t~p~~Lak~pg 280 (407)
T KOG1460|consen 201 RQDLLEVEKDLPLLQPGPADFIRLEQDVLSPLAGSKQLYAYETTDFWSQIKTAGSALYASRLYLSQYKRTHPARLAKGPG 280 (407)
T ss_pred HHhhhhhhhcccccCCCccceEEeechhhhhhcCCCceEEEecccHHHHhccccceeehhhhHHHHHhhcCchhhcCCCC
Confidence 0 0 0 1123457899999999999999999999999999999999999987331 11111 1
Q ss_pred CCCCccccCccCCCeee-cCCccc-cceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHH----
Q 014953 298 ATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVA---- 370 (415)
Q Consensus 298 ~~~~~~~~~~i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~---- 370 (415)
..+.+...+.|+|.+.+ ++++|+ |+.||++++|| ++.+.+|+|-++|.|.+++.+-+||++-++.|+.=+++.
T Consensus 281 t~a~IigdVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~pv 360 (407)
T KOG1460|consen 281 TQAEIIGDVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEGIPV 360 (407)
T ss_pred CCceEEeeeEEcCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEEeeeecccccccceeeeccccc
Confidence 11234445555555555 455554 56666666666 566666666666666666666666666664333211111
Q ss_pred -----------hhhhCCCcceEeCCCCEEeeeEECCCeEEc
Q 014953 371 -----------SLLAEGRVPVGIGENTKIKYEQLKPICHIV 400 (415)
Q Consensus 371 -----------~~~~~~~~~~~Ig~~~~i~~~~i~~~~~i~ 400 (415)
+++|+. |.+++.|.+.+|++-++..+.
T Consensus 361 ~~s~~~~~~a~Tilga~---v~v~dev~v~~s~vlp~k~l~ 398 (407)
T KOG1460|consen 361 EPSPNLPFAALTILGAD---VSVEDEVIVLNSIVLPNKELN 398 (407)
T ss_pred ccCCCCCcceeEEeccc---ceecceeEEeeeeEecCCccc
Confidence 222333 555666666666666655444
|
|
| >KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-45 Score=349.85 Aligned_cols=376 Identities=16% Similarity=0.263 Sum_probs=263.9
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCccc
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (415)
..+++||+||..+-+||+|+|..+|++|||++|. |||+|+|++|.++|+++|+|+++.+..++.+|+.++. +... +
T Consensus 22 ~~rLqAIllaDsf~trF~Plt~~~p~~LLPlaNV-pmIdYtL~~L~~agV~eVfvfc~~~~~qi~e~i~~se-w~~~--~ 97 (673)
T KOG1461|consen 22 EHRLQAILLADSFETRFRPLTLEKPRVLLPLANV-PMIDYTLEWLERAGVEEVFVFCSAHAAQIIEYIEKSE-WYLP--M 97 (673)
T ss_pred ccceEEEEEeccchhcccccccCCCceEeeecCc-hHHHHHHHHHHhcCceEEEEEecccHHHHHHHHhhcc-cccc--c
Confidence 4679999999999999999999999999999999 9999999999999999999999999999999998742 1111 2
Q ss_pred CCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHc-----CCcEE
Q 014953 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQS-----GADIT 160 (415)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~-----~~~~t 160 (415)
+...+.|... .+...||++|..-+. +...++|++++||++.+.+|..++++|+++ ++.||
T Consensus 98 ~~~v~ti~s~----------~~~S~GDamR~id~k-----~litgDFiLVsgd~vsN~pl~~~l~eHr~r~k~Dk~~iMT 162 (673)
T KOG1461|consen 98 SFIVVTICSG----------ESRSVGDAMRDIDEK-----QLITGDFILVSGDTVSNMPLRNVLEEHRKRRKEDKDAIMT 162 (673)
T ss_pred cceEEEEcCC----------CcCcHHHHHHHHHhc-----ceeecceEEEeCCeeecCchHHHHHHHHHHhhhCccceEE
Confidence 2111233222 135889999887532 233699999999999999999999999753 56799
Q ss_pred EEEEEcCCCcCCcccEEEECC-CCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhh
Q 014953 161 ISCLPMDDSRASDFGLMKINN-EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRW 239 (415)
Q Consensus 161 i~~~~~~~~~~~~~g~v~~d~-~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~ 239 (415)
|++.+........-.++.+|. +.++..|.+... ....++++.+++... .....+.++.+++|.+||++++. ++.+
T Consensus 163 mv~k~~st~~~~~~~~~avd~~T~~ll~yq~~~~--~~~~~~l~~sl~d~~-~~v~vr~DL~dc~IdIcS~~V~s-LF~d 238 (673)
T KOG1461|consen 163 MVFKESSTRETTEQVVIAVDSRTSRLLHYQKCVR--EKHDIQLDLSLFDSN-DEVEVRNDLLDCQIDICSPEVLS-LFTD 238 (673)
T ss_pred EEEeccccccCCcceEEEEcCCcceEEeehhhcc--cccccccCHHHhcCC-CcEEEEccCCCceeeEecHhHHH-Hhhh
Confidence 999887421123344566665 578888876222 222455666666544 45567889999999999999995 6666
Q ss_pred hCCC--CCcccccchhhhcccceEEEEEeCc--eEEecCCHHHHHHHHHhhcCCC-----CCCCccCCCCCccc--cCcc
Q 014953 240 RFPT--ANDFGSEIIPASANEQFLKAYLFND--YWEDIGTIRSFFEANLALTAHP-----PMFSFYDATKPIYT--SRRN 308 (415)
Q Consensus 240 ~~~~--~~~~~~~~l~~l~~~~~i~~~~~~g--~~~di~t~~~y~~an~~~l~~~-----~~~~~~~~~~~~~~--~~~i 308 (415)
.|+. ..+|...+|..-+-+.+|+++..+. |..++.+++.|...++++++|| |...+.+....-.. +-.-
T Consensus 239 NFDyq~r~DfV~GvL~~dilg~kI~~~~~~~~~yA~rv~n~~syd~vSkDiI~RW~YP~Vpd~~~~~~q~~~~~r~~IYk 318 (673)
T KOG1461|consen 239 NFDYQTRDDFVRGVLVDDILGYKIHVHVLSSIDYAARVENLRSYDLVSKDIIQRWTYPLVPDINFSGNQTFSLERRNIYK 318 (673)
T ss_pred cccceehhhhhhhhhhhhhcCCeEEEEEcChhhhhhhhcccHHHHHHHHHHHHhhcccccccccCCCCceeeeccccccc
Confidence 5543 5677888888778899999999875 9999999999999999999999 22222211000000 0011
Q ss_pred CCCeee-cCCccc-cceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHH-hhhhCCCcceEeCC
Q 014953 309 LPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVA-SLLAEGRVPVGIGE 384 (415)
Q Consensus 309 ~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~-~~~~~~~~~~~Ig~ 384 (415)
++.+.+ .++.+. +++||.++.|| ++.|.||+||.||.||.+++|.+|+||.+++|+.+|++. +++.++ |.|++
T Consensus 319 ~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~---v~i~~ 395 (673)
T KOG1461|consen 319 SPDVVLSHSVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDD---VKIGE 395 (673)
T ss_pred CccceehhhccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeecC---cEeCC
Confidence 222223 233332 55566666666 466666666666666666666666666665555554443 244444 78888
Q ss_pred CCEEe-eeEECCCeEEcCCcccCc
Q 014953 385 NTKIK-YEQLKPICHIVETKYDSS 407 (415)
Q Consensus 385 ~~~i~-~~~i~~~~~i~~~~~~~~ 407 (415)
||++. +||||.++++|++...-+
T Consensus 396 ~~~l~~g~vl~~~VVv~~~~~l~~ 419 (673)
T KOG1461|consen 396 GAILKPGSVLGFGVVVGRNFVLPK 419 (673)
T ss_pred CcccCCCcEEeeeeEeCCCccccc
Confidence 88886 888888888888775443
|
|
| >KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-44 Score=326.10 Aligned_cols=363 Identities=18% Similarity=0.263 Sum_probs=253.8
Q ss_pred cccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccC-hhHHHHHHHhhccCCCCc
Q 014953 5 DARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYN-SASLNRHLARAYNYGSGV 83 (415)
Q Consensus 5 ~~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~-~~~i~~~l~~~~~~~~~~ 83 (415)
.|.+++|||+|||.||||-.+++..|||||||+|+ |||+|.|++|.++|+++|+|++... ...++..+...++..
T Consensus 6 ~~~efqavV~a~~ggt~~p~~~~~~pKaLLPIgn~-PMi~YpL~~L~~~gfteiiVv~~e~e~~~i~~al~~~~~l~--- 81 (433)
T KOG1462|consen 6 PMSEFQAVVLAGGGGTRMPEVTSRLPKALLPIGNK-PMILYPLNSLEQAGFTEIIVVVNEDEKLDIESALGSNIDLK--- 81 (433)
T ss_pred chHHhhhheeecCCceechhhhhhcchhhcccCCc-ceeeeehhHHHhcCCeEEEEEecHHHHHHHHHHHhcCCccc---
Confidence 57889999999999999999999999999999999 9999999999999999999999874 356666665544221
Q ss_pred ccCCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEE
Q 014953 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISC 163 (415)
Q Consensus 84 ~~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~ 163 (415)
.....+++-...+. ..||+++|+.....++ .+||+++.||.+++.++..++++++..++.+.++.
T Consensus 82 -~~~~~v~ip~~~~~--------d~gtadsLr~Iy~kik------S~DflvlsCD~Vtdv~l~~lvd~FR~~d~slamli 146 (433)
T KOG1462|consen 82 -KRPDYVEIPTDDNS--------DFGTADSLRYIYSKIK------SEDFLVLSCDFVTDVPLQPLVDKFRATDASLAMLI 146 (433)
T ss_pred -ccccEEEeeccccc--------ccCCHHHHhhhhhhhc------cCCEEEEecccccCCCcHHHHHHHhccChhHhHHh
Confidence 11112333222222 2699999999998886 47999999999999999999999998877655544
Q ss_pred EEcCC---------CcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHH
Q 014953 164 LPMDD---------SRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILL 234 (415)
Q Consensus 164 ~~~~~---------~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~ 234 (415)
..... +....+.++-++++++=..|..... .....+.+..++++..|+.. ..+.|.++++|+|+.++++
T Consensus 147 ~~~~s~~~~pgqk~k~k~~~d~igi~e~t~rl~y~~~~~-d~~~~l~i~~slL~~~prlt-l~t~L~dahiY~~k~~v~d 224 (433)
T KOG1462|consen 147 GNALSEVPIPGQKGKKKQARDVIGINEDTERLAYSSDSA-DEEEPLVIRKSLLWNHPRLT-LTTKLVDAHIYVFKHWVID 224 (433)
T ss_pred ccccccccccCcccccccccceeeeccccceeEEeecCC-cCCCceehhhhhhhcCCceE-EeccccceeeeeeHHHHHH
Confidence 32211 1112344555655543344443322 22345677778887776643 3578999999999999996
Q ss_pred HHHhhhCCCCCcccccchhhhccc---------------------------------ceEEEEEeC--ceEEecCCHHHH
Q 014953 235 NLLRWRFPTANDFGSEIIPASANE---------------------------------QFLKAYLFN--DYWEDIGTIRSF 279 (415)
Q Consensus 235 ~~l~~~~~~~~~~~~~~l~~l~~~---------------------------------~~i~~~~~~--g~~~di~t~~~y 279 (415)
++.+. +...+|..+++|.+++. .++++|... .-+.+++|.-.|
T Consensus 225 -~l~~~-~sisSfk~~f~P~lvkkQ~q~~~~~~~~~~~~l~t~~~~~~d~~~~~~d~ik~y~~~~p~e~~~~raNtL~~y 302 (433)
T KOG1462|consen 225 -LLSEK-ESISSFKADFLPYLVKKQFQKNPPLKKNETSILPTPNLNNPDGIHSPDDRIKCYAYILPTESLFVRANTLLSY 302 (433)
T ss_pred -HHhcC-CcceeecccccchhhhhhhhcCCCcccccccccCCccccCcccccCcccceeeeEEEccCccceEEecchHHH
Confidence 44432 23456777777777642 234555543 568899999999
Q ss_pred HHHHH--hhcCCCCCCCccC----CCCCccccCccCCCeee-cCCccccceECCCCEEc-ceEEeeeEEccCcEECCCcE
Q 014953 280 FEANL--ALTAHPPMFSFYD----ATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVH 351 (415)
Q Consensus 280 ~~an~--~~l~~~~~~~~~~----~~~~~~~~~~i~~~~~i-~~~~i~~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~ 351 (415)
+++|+ .+....+...+.. ..+.+...+.+++++.| +++.|+.|+||.||.|| .++|.+|+|++|++||+|+.
T Consensus 303 ~eiN~~k~~~~l~~e~~~~k~~~~~~~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~ 382 (433)
T KOG1462|consen 303 MEINRDKKLKKLCSEAKFVKNYVKKVALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMDNVVVGDGVN 382 (433)
T ss_pred HhhhHHHHHHHhccccccccchhhheeccchhhccCCCceecccceeeeeeecCCccccCCcEEEeeEeecCcEecCCcc
Confidence 99994 3332222211111 11222334555666666 46666677777777777 47777777777777777777
Q ss_pred EeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEeeeEECCCeEEcCCcccCccc
Q 014953 352 LKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKYEQLKPICHIVETKYDSSTI 409 (415)
Q Consensus 352 i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~~i~~~~~i~~~~~~~~~~ 409 (415)
|.||||+.+ ++||++|.+.||+||++-+|.++.+..++.
T Consensus 383 IensIIg~g-------------------A~Ig~gs~L~nC~Ig~~yvVeak~~~~~ev 421 (433)
T KOG1462|consen 383 IENSIIGMG-------------------AQIGSGSKLKNCIIGPGYVVEAKGKHGGEV 421 (433)
T ss_pred eecceeccc-------------------ceecCCCeeeeeEecCCcEEcccccccccE
Confidence 777777777 899999999999999999999777655443
|
|
| >PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-43 Score=350.08 Aligned_cols=349 Identities=20% Similarity=0.231 Sum_probs=262.5
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCccc
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (415)
|++++|||||||.|+||++ .+||+|+|++|+ |||+|++++|.++|++++++++++..+++.+++.+..
T Consensus 1 m~~~~avIlAaG~g~Rl~~---~~pK~l~pi~g~-pli~~~l~~l~~~gi~~iiiv~~~~~~~i~~~~~~~~-------- 68 (459)
T PRK14355 1 MNNLAAIILAAGKGTRMKS---DLVKVMHPLAGR-PMVSWPVAAAREAGAGRIVLVVGHQAEKVREHFAGDG-------- 68 (459)
T ss_pred CCcceEEEEcCCCCcccCC---CCCceeceeCCc-cHHHHHHHHHHhcCCCeEEEEECCCHHHHHHHhccCC--------
Confidence 5678999999999999984 689999999999 9999999999999999999999999888888875311
Q ss_pred CCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe--ecccChHHHHHHHHHcCCcEEEEE
Q 014953 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGADITISC 163 (415)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~--i~~~~l~~~l~~h~~~~~~~ti~~ 163 (415)
.+.++...+ .+|++++++.+++++++. .++|++++||. +.+.++.++++.|.+.+++++++.
T Consensus 69 ---~i~~~~~~~---------~~Gt~~al~~a~~~l~~~----~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~ 132 (459)
T PRK14355 69 ---DVSFALQEE---------QLGTGHAVACAAPALDGF----SGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLT 132 (459)
T ss_pred ---ceEEEecCC---------CCCHHHHHHHHHHHhhcc----CCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEE
Confidence 122222111 269999999999998531 36899999998 446678999999988888888888
Q ss_pred EEcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC
Q 014953 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (415)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~ 243 (415)
.+.++ +..|+.+.+|++++|..+.|||..... + ..++++++|+|+|++++|.+.++...+.
T Consensus 133 ~~~~~--~~~~g~v~~d~~g~v~~~~ek~~~~~~---------------~--~~~~~~~~Giy~~~~~~l~~~l~~~~~~ 193 (459)
T PRK14355 133 ARLEN--PFGYGRIVRDADGRVLRIVEEKDATPE---------------E--RSIREVNSGIYCVEAAFLFDAIGRLGND 193 (459)
T ss_pred EEcCC--CCcCCEEEEcCCCCEEEEEEcCCCChh---------------H--hhccEEEEEEEEEeHHHHHHHHHHcCcc
Confidence 77655 467999888888999999998743210 0 0136789999999999876666543221
Q ss_pred ---CCcccccchhhhcccc-eEEEEEeCce--EEecCCHHHHHHHHHhhcCCC------CCCCccCCCC-CccccCccCC
Q 014953 244 ---ANDFGSEIIPASANEQ-FLKAYLFNDY--WEDIGTIRSFFEANLALTAHP------PMFSFYDATK-PIYTSRRNLP 310 (415)
Q Consensus 244 ---~~~~~~~~l~~l~~~~-~i~~~~~~g~--~~di~t~~~y~~an~~~l~~~------~~~~~~~~~~-~~~~~~~i~~ 310 (415)
...+..++++.+++++ ++++|+++++ |.|+++|++|++|++.++... .....+++.. .+..++.+++
T Consensus 194 ~~~~e~~~~d~i~~l~~~g~~v~~~~~~~~~~~~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~~i~~~~~~i~~~v~ig~ 273 (459)
T PRK14355 194 NAQGEYYLTDIVAMAAAEGLRCLAFPVADPDEIMGVNDRAQLAEAARVLRRRINRELMLAGVTLIDPETTYIDRGVVIGR 273 (459)
T ss_pred ccCCceeHHHHHHHHHHCCCeEEEEEcCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCceEECCCeEEcC
Confidence 2234568899888764 7999999987 999999999999988665431 1222445543 3555666667
Q ss_pred Ceee-cCCccc-cceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHH--hhhhCCCcceEeCCC
Q 014953 311 PSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVA--SLLAEGRVPVGIGEN 385 (415)
Q Consensus 311 ~~~i-~~~~i~-~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~--~~~~~~~~~~~Ig~~ 385 (415)
++.| +++.|. +++||++|+|+ +++|.+|+||++|+|+++++|.++++++++.|++++.+. +.++++ +.||++
T Consensus 274 ~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~---~~ig~~ 350 (459)
T PRK14355 274 DTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAH---VKIGNF 350 (459)
T ss_pred CCEEeCCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCC---CEECCC
Confidence 7777 666664 78999999998 799999999999999999999999999998777665543 234444 444443
Q ss_pred C-----------EEe------eeEECCCeEEcCCcc
Q 014953 386 T-----------KIK------YEQLKPICHIVETKY 404 (415)
Q Consensus 386 ~-----------~i~------~~~i~~~~~i~~~~~ 404 (415)
+ .+. +++||+++.|++++.
T Consensus 351 ~~~~~~~ig~~~~~~~~~~ig~~~ig~~~~ig~~~~ 386 (459)
T PRK14355 351 VETKKIVMGEGSKASHLTYLGDATIGRNVNIGCGTI 386 (459)
T ss_pred ccccCCEECCCceeeeeccccCCEECCCCEEcccee
Confidence 3 221 346666666666653
|
|
| >COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-43 Score=323.96 Aligned_cols=307 Identities=21% Similarity=0.262 Sum_probs=230.6
Q ss_pred cceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccC
Q 014953 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (415)
+++.+||||||.||||+ ++.||.|.|++|+ ||++|+++.+...+.+++.+|+++..+++++.+.+.. ...|
T Consensus 1 ~~~~~vILAAGkGTRMk---S~lPKVLH~vaGk-pMl~hVi~~a~~l~~~~i~vVvGh~ae~V~~~~~~~~----~v~~- 71 (460)
T COG1207 1 MSLSAVILAAGKGTRMK---SDLPKVLHPVAGK-PMLEHVIDAARALGPDDIVVVVGHGAEQVREALAERD----DVEF- 71 (460)
T ss_pred CCceEEEEecCCCcccc---CCCcccchhccCc-cHHHHHHHHHhhcCcceEEEEEcCCHHHHHHHhcccc----CceE-
Confidence 36789999999999998 8999999999999 9999999999999999999999999999998885321 1122
Q ss_pred CceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHHHHHcCCcEEEEEE
Q 014953 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCL 164 (415)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~h~~~~~~~ti~~~ 164 (415)
+++.. ++||++|++++++++.+. .+.++||++||+ ++..+ |+++++.|...++.++++..
T Consensus 72 -----v~Q~e----------qlGTgHAV~~a~~~l~~~---~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~ 133 (460)
T COG1207 72 -----VLQEE----------QLGTGHAVLQALPALADD---YDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTA 133 (460)
T ss_pred -----EEecc----------cCChHHHHHhhhhhhhcC---CCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEE
Confidence 22222 379999999999999321 145899999999 55554 88999999999999999999
Q ss_pred EcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCC
Q 014953 165 PMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA 244 (415)
Q Consensus 165 ~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~~ 244 (415)
..++ |..||.+..+++|+|.++.|..+.... +. .-..+++|+|+|+.+.|.++|..... +
T Consensus 134 ~~~d--P~GYGRIvr~~~g~V~~IVE~KDA~~e---------------ek--~I~eiNtGiy~f~~~~L~~~L~~l~n-n 193 (460)
T COG1207 134 ELDD--PTGYGRIVRDGNGEVTAIVEEKDASEE---------------EK--QIKEINTGIYAFDGAALLRALPKLSN-N 193 (460)
T ss_pred EcCC--CCCcceEEEcCCCcEEEEEEcCCCCHH---------------Hh--cCcEEeeeEEEEcHHHHHHHHHHhcc-c
Confidence 9988 799999999989999999998775432 11 12578999999999988888877533 2
Q ss_pred Ccccccchhhhcc-----cceEEEEEeCce--EEecCCHHHHHHHHHhhcCCC------CCCCccCCCCCc-cccCccCC
Q 014953 245 NDFGSEIIPASAN-----EQFLKAYLFNDY--WEDIGTIRSFFEANLALTAHP------PMFSFYDATKPI-YTSRRNLP 310 (415)
Q Consensus 245 ~~~~~~~l~~l~~-----~~~i~~~~~~g~--~~di~t~~~y~~an~~~l~~~------~~~~~~~~~~~~-~~~~~i~~ 310 (415)
+.-.+++|++++. +.++.++..+++ ..-+|+...+.++++.+.+|. ..+++++|...+ .....+++
T Consensus 194 NaqgEYYLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN~R~qLa~~e~~~q~r~~~~~m~~GVtl~dP~t~~i~~dv~ig~ 273 (460)
T COG1207 194 NAQGEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRRIAEKLMLAGVTLIDPATTYIRGDVEIGR 273 (460)
T ss_pred cccCcEeHHHHHHHHHhCCCeEEEEecCchHHhcCcCcHHHHHHHHHHHHHHHHHHHHHcCcEEeCCCeEEEcCcEEECC
Confidence 3334555655543 578999998865 678999999999988776543 355566665432 23344455
Q ss_pred Ceee-cCCccc-cceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCC
Q 014953 311 PSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGA 360 (415)
Q Consensus 311 ~~~i-~~~~i~-~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~ 360 (415)
.+.| +++.++ ++.||++|+|+ +|.|++|.|++++.|-+.+.|.+|.+.++
T Consensus 274 DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~ 326 (460)
T COG1207 274 DVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEG 326 (460)
T ss_pred ceEEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCC
Confidence 5555 445443 56666666666 56666666666666666666666666666
|
|
| >PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=345.38 Aligned_cols=351 Identities=20% Similarity=0.217 Sum_probs=256.3
Q ss_pred CCcccccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCC
Q 014953 1 MEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYG 80 (415)
Q Consensus 1 ~~~~~~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~ 80 (415)
|.... ++|+|||||||.|+||+| .+||+|+|++|+ |||+|++++|.++|+++|+|+++++.+.+.+++...
T Consensus 1 ~~~~~-~~~~avILAaG~gtRl~~---~~pK~llpi~gk-pli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~~---- 71 (481)
T PRK14358 1 MTEQT-RPLDVVILAAGQGTRMKS---ALPKVLHPVAGR-PMVAWAVKAARDLGARKIVVVTGHGAEQVEAALQGS---- 71 (481)
T ss_pred CCccc-CCceEEEECCCCCCcCCC---CCCceecEECCe-eHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhccC----
Confidence 44444 589999999999999996 589999999999 999999999999999999999999888888877411
Q ss_pred CCcccCCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe--ecccChHHHHHHHHHcCCc
Q 014953 81 SGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGAD 158 (415)
Q Consensus 81 ~~~~~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~--i~~~~l~~~l~~h~~~~~~ 158 (415)
+ +.++... ++.|++++++.++.++.. ..++|++++||+ +.+.++.+++++|++++++
T Consensus 72 -~-------i~~v~~~---------~~~Gt~~al~~~~~~l~~----~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~ 130 (481)
T PRK14358 72 -G-------VAFARQE---------QQLGTGDAFLSGASALTE----GDADILVLYGDTPLLRPDTLRALVADHRAQGSA 130 (481)
T ss_pred -C-------cEEecCC---------CcCCcHHHHHHHHHHhhC----CCCcEEEEeCCeeccCHHHHHHHHHHHHhcCCe
Confidence 1 2333221 236999999999988752 135799999998 4456699999999999999
Q ss_pred EEEEEEEcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHh
Q 014953 159 ITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLR 238 (415)
Q Consensus 159 ~ti~~~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~ 238 (415)
+|+++.+.++ +..||++.+|++++|.+|.|||..+... ...+++++|+|+|+++.+ ++++
T Consensus 131 ~ti~~~~~~~--~~~yG~v~~d~~g~v~~~~Ek~~~~~~~-----------------~~~~~~n~Giyi~~~~~~-~~~~ 190 (481)
T PRK14358 131 MTILTGELPD--ATGYGRIVRGADGAVERIVEQKDATDAE-----------------KAIGEFNSGVYVFDARAP-ELAR 190 (481)
T ss_pred EEEEEEEcCC--CCCceEEEECCCCCEEEEEECCCCChhH-----------------hhCCeEEEEEEEEchHHH-HHHH
Confidence 9998888775 5679999999889999999998753210 012468999999997653 2333
Q ss_pred hhC---CCCCcccccchhhhcccc-eEEEEEeCceEEecCCHHHHHHHHHh-hcCCC-------CCCCccCCCCC-cccc
Q 014953 239 WRF---PTANDFGSEIIPASANEQ-FLKAYLFNDYWEDIGTIRSFFEANLA-LTAHP-------PMFSFYDATKP-IYTS 305 (415)
Q Consensus 239 ~~~---~~~~~~~~~~l~~l~~~~-~i~~~~~~g~~~di~t~~~y~~an~~-~l~~~-------~~~~~~~~~~~-~~~~ 305 (415)
... .....+..|+++.+++++ ++++|.+.++|..++.-.+|+.+++. +++.. .....++|... +.+.
T Consensus 191 ~i~~~~~~ge~~l~d~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 270 (481)
T PRK14358 191 RIGNDNKAGEYYLTDLLGLYRAGGAQVRAFKLSDPDEVLGANDRAGLAQLEATLRRRINEAHMKAGVTLQDPGTILIEDT 270 (481)
T ss_pred hcCCCccCCeEEHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeeeccCC
Confidence 321 112334568888888764 79999999998888888777777754 44322 11222233222 2344
Q ss_pred CccCCCeee-cCCccc-cceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHH--hhhhCCCcce
Q 014953 306 RRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVA--SLLAEGRVPV 380 (415)
Q Consensus 306 ~~i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~--~~~~~~~~~~ 380 (415)
+.|+.++.| +++.|. ++.||++|+|+ +|.|++|+||++|.|+++++|.++++++++.++.++.+. +.++++ +
T Consensus 271 ~~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~---~ 347 (481)
T PRK14358 271 VTLGRDVTIEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEG---V 347 (481)
T ss_pred cEECCCCEEeCCcEEeCCcEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCC---C
Confidence 555666666 566664 57789999998 688899999999999999999999999998888887664 455555 5
Q ss_pred EeCCCCEE-----------------eeeEECCCeEEcCCcc
Q 014953 381 GIGENTKI-----------------KYEQLKPICHIVETKY 404 (415)
Q Consensus 381 ~Ig~~~~i-----------------~~~~i~~~~~i~~~~~ 404 (415)
.||+++.| .+++||+++.|++++.
T Consensus 348 ~Ig~~~~i~~~~i~~~~~ig~~~~~~~~~ig~~~~ig~~~~ 388 (481)
T PRK14358 348 HIGNFVETKNARLDAGVKAGHLAYLGDVTIGAETNVGAGTI 388 (481)
T ss_pred EECCCEEECCceecCCcccCceEEECCeEEcCCceEcCCEE
Confidence 55554332 3466666666666653
|
|
| >PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-42 Score=341.94 Aligned_cols=238 Identities=18% Similarity=0.244 Sum_probs=184.4
Q ss_pred cceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccC
Q 014953 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (415)
.++.|||||||.|+||+| .+||+|+|++|+ |||+|++++|.++|++++++++++..+++.+++.... .
T Consensus 3 ~~~~avILAaG~gtRm~~---~~pK~llpi~gk-pli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~~---~----- 70 (482)
T PRK14352 3 RPTAVIVLAAGAGTRMRS---DTPKVLHTLAGR-SMLGHVLHAAAGLAPQHLVVVVGHDRERVAPAVAELA---P----- 70 (482)
T ss_pred CCceEEEEcCCCCCcCCC---CCCceeceeCCc-cHHHHHHHHHHhcCCCcEEEEECCCHHHHHHHhhccC---C-----
Confidence 467899999999999986 589999999999 9999999999999999999999998888888775311 0
Q ss_pred CceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ec-ccChHHHHHHHHHcCCcEEEEEE
Q 014953 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LY-RMDYMDFVQNHRQSGADITISCL 164 (415)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~-~~~l~~~l~~h~~~~~~~ti~~~ 164 (415)
. +.++... +..|++++++.++.++... ..++|++++||+ ++ ..++.++++.|++.+++++++..
T Consensus 71 -~-~~~~~~~---------~~~Gt~~si~~al~~l~~~---~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~~ 136 (482)
T PRK14352 71 -E-VDIAVQD---------EQPGTGHAVQCALEALPAD---FDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLTT 136 (482)
T ss_pred -c-cEEEeCC---------CCCCcHHHHHHHHHHhccC---CCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEe
Confidence 1 2222111 2369999999999888421 136799999998 44 45699999999888888887777
Q ss_pred EcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC-
Q 014953 165 PMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT- 243 (415)
Q Consensus 165 ~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~- 243 (415)
+..+ +..|+.+..|++++|.++.|||...... ...+++++|+|+|++++|..+++.....
T Consensus 137 ~~~~--p~~yg~~~~~~~g~V~~~~EKp~~~~~~-----------------~~~~~~~~Giy~f~~~~l~~~~~~~~~~~ 197 (482)
T PRK14352 137 TLDD--PTGYGRILRDQDGEVTAIVEQKDATPSQ-----------------RAIREVNSGVYAFDAAVLRSALARLSSDN 197 (482)
T ss_pred ecCC--CCCCCEEEECCCCCEEEEEECCCCCHHH-----------------hhcceEEEEEEEEEHHHHHHHHHhhCccc
Confidence 6655 5779998888889999999998854210 0135689999999999997776653321
Q ss_pred --CCcccccchhhhcccc-eEEEEEeCceEEecCCHHHH------HHHHHhhcCC
Q 014953 244 --ANDFGSEIIPASANEQ-FLKAYLFNDYWEDIGTIRSF------FEANLALTAH 289 (415)
Q Consensus 244 --~~~~~~~~l~~l~~~~-~i~~~~~~g~~~di~t~~~y------~~an~~~l~~ 289 (415)
...+..|+++.+++.+ ++++|++++||.|++++++| ..+|+.++..
T Consensus 198 ~~~e~~l~d~i~~l~~~g~~V~~~~~~g~w~~~g~~~~~~~~~a~~~~~~~~~~~ 252 (482)
T PRK14352 198 AQGELYLTDVLAIAREAGHRVGAHHADDSAEVAGVNDRVQLAALGAELNRRIVEA 252 (482)
T ss_pred cCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEcCCCHHHHHHHHHHHHHHHHHH
Confidence 2344578898888764 89999999999999999888 5566655543
|
|
| >COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-42 Score=299.35 Aligned_cols=234 Identities=26% Similarity=0.453 Sum_probs=197.4
Q ss_pred eEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCc
Q 014953 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (415)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (415)
|||||||||.||||+|+|...||.|+||.+| |||+|.++.|..+||++|.|+++++.....+++ +++|.+|+..
T Consensus 1 mKgiILAgG~GTRL~PlT~~~~KqLlpV~~K-Pmi~y~l~~L~~aGI~dI~II~~~~~~~~~~~l-----lGdgs~~gv~ 74 (286)
T COG1209 1 MKGVILAGGSGTRLRPLTRVVPKQLLPVYDK-PMIYYPLETLMLAGIRDILIVVGPEDKPTFKEL-----LGDGSDFGVD 74 (286)
T ss_pred CCcEEecCcCccccccccccCCcccceecCc-chhHhHHHHHHHcCCceEEEEecCCchhhhhhh-----hcCccccCcc
Confidence 7999999999999999999999999999999 999999999999999999999999664433333 4677778754
Q ss_pred eEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEEEcCC
Q 014953 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDD 168 (415)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~~~~~ 168 (415)
+.+..|.. +.|.++|+..+.+|+. +++|+++.||.++..++.++++.+.+++.++++++.++++
T Consensus 75 ---itY~~Q~~-------p~GlA~Av~~a~~fv~------~~~f~l~LGDNi~~~~l~~~~~~~~~~~~ga~i~~~~V~d 138 (286)
T COG1209 75 ---ITYAVQPE-------PDGLAHAVLIAEDFVG------DDDFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVDD 138 (286)
T ss_pred ---eEEEecCC-------CCcHHHHHHHHHhhcC------CCceEEEecCceeccChHHHHHHHhccCCCcEEEEEEcCC
Confidence 22233432 4699999999999997 4899999999977779999999999988899999999997
Q ss_pred CcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC-C-Cc
Q 014953 169 SRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT-A-ND 246 (415)
Q Consensus 169 ~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~-~-~~ 246 (415)
|++||++.+|++++++.+.|||..+. ||++-+|+|+|++++|. .++...|. . +.
T Consensus 139 --P~rfGV~e~d~~~~v~~l~EKP~~P~---------------------SNlAvtGlY~~d~~Vf~-~~~~ikPS~RGEl 194 (286)
T COG1209 139 --PSRYGVVEFDEDGKVIGLEEKPKEPK---------------------SNLAVTGLYFYDPSVFE-AIKQIKPSARGEL 194 (286)
T ss_pred --cccceEEEEcCCCcEEEeEECCCCCC---------------------CceeEEEEEEeChHHHH-HHHcCCCCCCCce
Confidence 89999999998999999999999875 68999999999999996 55554343 2 22
Q ss_pred ccccchhhhcccc-eEEEEEeCceEEecCCHHHHHHHHHhhcC
Q 014953 247 FGSEIIPASANEQ-FLKAYLFNDYWEDIGTIRSFFEANLALTA 288 (415)
Q Consensus 247 ~~~~~l~~l~~~~-~i~~~~~~g~~~di~t~~~y~~an~~~l~ 288 (415)
-..|+++.+++++ .+......|+|.|.||+++|++|++.++.
T Consensus 195 EITd~i~~~i~~G~~~~~~~~~G~WlDtGt~~slleA~~~i~~ 237 (286)
T COG1209 195 EITDAIDLYIEKGYLVVAILIRGWWLDTGTPESLLEANNFVRT 237 (286)
T ss_pred EehHHHHHHHHcCcEEEEEEccceEEecCChhhHHHHHHHHHH
Confidence 2468888888765 45566677899999999999999998875
|
|
| >PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=329.32 Aligned_cols=353 Identities=20% Similarity=0.246 Sum_probs=245.5
Q ss_pred cceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccC
Q 014953 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (415)
++++|||||||.|+||+| .+||+|+|++|+ |||+|+++.|.++ ++++.|++++..+++.+++.+.+ .+
T Consensus 1 m~~~aiIlAaG~GtRl~~---~~pK~Llpi~gk-Pli~~~i~~l~~~-~~~i~Ivv~~~~~~i~~~~~~~~---~~---- 68 (430)
T PRK14359 1 MKLSIIILAAGKGTRMKS---SLPKVLHTICGK-PMLFYILKEAFAI-SDDVHVVLHHQKERIKEAVLEYF---PG---- 68 (430)
T ss_pred CCccEEEEcCCCCccCCC---CCCceeCEECCc-cHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhcC---Cc----
Confidence 457899999999999986 799999999999 9999999999986 78999999999999998886431 11
Q ss_pred CceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEEEc
Q 014953 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPM 166 (415)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~~~ 166 (415)
+.++..... .+.||+++++.+.. . .++|++++||..+. ..+.++.+.+.++++++.+.+.
T Consensus 69 ---v~~~~~~~~-------~~~gt~~al~~~~~---~-----~d~vlv~~gD~p~~--~~~~l~~l~~~~~~~~v~~~~~ 128 (430)
T PRK14359 69 ---VIFHTQDLE-------NYPGTGGALMGIEP---K-----HERVLILNGDMPLV--EKDELEKLLENDADIVMSVFHL 128 (430)
T ss_pred ---eEEEEecCc-------cCCCcHHHHhhccc---C-----CCeEEEEECCccCC--CHHHHHHHHhCCCCEEEEEEEc
Confidence 333322111 13699999987421 1 47899999998432 1245555666677888888777
Q ss_pred CCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCC---C
Q 014953 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP---T 243 (415)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~---~ 243 (415)
++ +..|+.+..+ +|++..+.|++..... + ...++.++|+|+|++++|..+++.... .
T Consensus 129 ~~--~~~~g~v~~d-~g~v~~i~e~~~~~~~---------------~--~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~ 188 (430)
T PRK14359 129 AD--PKGYGRVVIE-NGQVKKIVEQKDANEE---------------E--LKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQ 188 (430)
T ss_pred CC--CccCcEEEEc-CCeEEEEEECCCCCcc---------------c--ccceEEEeEEEEEEHHHHHHHHHhcCccccc
Confidence 65 5668887775 6899999998754221 0 013678999999999999766554221 1
Q ss_pred CCcccccchhhhccc-ceEEEEEeC-ceEEecCCHHHHHHHHHhhcCCCC-------------CCCccCCCCCccccCcc
Q 014953 244 ANDFGSEIIPASANE-QFLKAYLFN-DYWEDIGTIRSFFEANLALTAHPP-------------MFSFYDATKPIYTSRRN 308 (415)
Q Consensus 244 ~~~~~~~~l~~l~~~-~~i~~~~~~-g~~~di~t~~~y~~an~~~l~~~~-------------~~~~~~~~~~~~~~~~i 308 (415)
...+..|+++.+++. .++.++..+ ++|.||++|+||++|+..+..+.. ...++.++..+...+.+
T Consensus 189 ~e~~l~d~i~~l~~~g~~v~~~~~~~~~w~dI~t~~dl~~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~g~~~i 268 (430)
T PRK14359 189 KEYYLTDIIALAIEKGETIKAVFVDEENFMGVNSKFELAKAEEIMQERIKKNAMKQGVIMRLPETIYIESGVEFEGECEL 268 (430)
T ss_pred CceehhhHHHHHHHcCCeEEEEEcCCCEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCeeEECCCcEEcCceEE
Confidence 223456778877765 689999987 589999999999999876654311 11123344445555566
Q ss_pred CCCeee-cCCccccceECCCCEEcceEEeeeEEccCcEECCCcEEeecEEeCCcc-------------------------
Q 014953 309 LPPSKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADF------------------------- 362 (415)
Q Consensus 309 ~~~~~i-~~~~i~~~~ig~~~~I~~~~i~~svig~~~~ig~~~~i~~sii~~~~~------------------------- 362 (415)
++++.| +++.+++++||++|.|+++.+++|+||++|+|+++++|.+|.|++++.
T Consensus 269 g~~~~I~~~~~i~~~~i~~~~~I~~~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~~~~~~i~~~~~i~d~~Ig~~ 348 (430)
T PRK14359 269 EEGVRILGKSKIENSHIKAHSVIEESIIENSDVGPLAHIRPKSEIKNTHIGNFVETKNAKLNGVKAGHLSYLGDCEIDEG 348 (430)
T ss_pred CCCCEECCCeEEEeeEECCCCEEeccEEeCCEECCCCEECCCcEEeccEEcCcEEEcccEeccccccccccccCCEECCC
Confidence 666666 566667777788887776667777777777777777776666665553
Q ss_pred --ccchhHHH---------hhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 363 --YETDAEVA---------SLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 363 --~~~~~~~~---------~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
++.++.+. +.++++ |.||.||.|. ++.||+++.|++++.+.+.+..++.
T Consensus 349 ~~ig~~~~~~~~~~~~~~~~~ig~~---~~ig~~~~i~~~~~ig~~~~i~~g~~v~~~v~~~~~ 409 (430)
T PRK14359 349 TNIGAGTITCNYDGKKKHKTIIGKN---VFIGSDTQLVAPVNIEDNVLIAAGSTVTKDVPKGSL 409 (430)
T ss_pred CEECCCceEccccCccCcCCEECCC---eEEcCCCEEeCCcEECCCCEECCCCEEccccCCCcE
Confidence 33332211 233444 5666666665 6778888888888877777666553
|
|
| >TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=335.24 Aligned_cols=352 Identities=20% Similarity=0.236 Sum_probs=242.1
Q ss_pred eEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCc
Q 014953 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (415)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (415)
|+|||||||.|+||+| .+||+|+|++|+ |||+|++++|.++|+++++++++++.+.+.+++.+ ++
T Consensus 1 m~aiIlAaG~g~R~~~---~~pK~l~~i~gk-pli~~~l~~l~~~g~~~iiiv~~~~~~~i~~~~~~---------~~-- 65 (451)
T TIGR01173 1 LSVVILAAGKGTRMKS---DLPKVLHPLAGK-PMLEHVIDAARALGPQKIHVVYGHGAEQVRKALAN---------RD-- 65 (451)
T ss_pred CeEEEEcCCCCcccCC---CCchhhceeCCc-cHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcC---------CC--
Confidence 7899999999999996 699999999999 99999999999999999999999998888877743 11
Q ss_pred eEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ec-ccChHHHHHHHHHcCCcEEEEEEEc
Q 014953 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LY-RMDYMDFVQNHRQSGADITISCLPM 166 (415)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~-~~~l~~~l~~h~~~~~~~ti~~~~~ 166 (415)
+.++...+ +.|++++++.++++++. .++|++++||. ++ ..++..++++|.+. .+++++.+.
T Consensus 66 -i~~~~~~~---------~~G~~~ai~~a~~~l~~-----~~~~lv~~~D~p~i~~~~~~~l~~~~~~~--~~~~~~~~~ 128 (451)
T TIGR01173 66 -VNWVLQAE---------QLGTGHAVLQALPFLPD-----DGDVLVLYGDVPLISAETLERLLEAHRQN--GITLLTAKL 128 (451)
T ss_pred -cEEEEcCC---------CCchHHHHHHHHHhcCC-----CCcEEEEECCcCCcCHHHHHHHHHHHhhC--CEEEEEEec
Confidence 22221111 25999999999998853 36899999998 33 45689999988664 366666666
Q ss_pred CCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC---
Q 014953 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT--- 243 (415)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~--- 243 (415)
++ +..|+.+..|++++|..+.|||...... ...+++++|+|+|++++|..+++.....
T Consensus 129 ~~--~~~~g~v~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~ 189 (451)
T TIGR01173 129 PD--PTGYGRIIRENDGKVTAIVEDKDANAEQ-----------------KAIKEINTGVYVFDGAALKRWLPKLSNNNAQ 189 (451)
T ss_pred CC--CCCCCEEEEcCCCCEEEEEEcCCCChHH-----------------hcCcEEEEEEEEEeHHHHHHHHHhccccccc
Confidence 43 5668988888888999999987643210 0125788999999999976666553221
Q ss_pred CCcccccchhhhccc-ceEEEEEeCce--EEecCCHHHHHHHHHhhcCCC------CCC-------------------Cc
Q 014953 244 ANDFGSEIIPASANE-QFLKAYLFNDY--WEDIGTIRSFFEANLALTAHP------PMF-------------------SF 295 (415)
Q Consensus 244 ~~~~~~~~l~~l~~~-~~i~~~~~~g~--~~di~t~~~y~~an~~~l~~~------~~~-------------------~~ 295 (415)
...+..++++.+++. .++++|+++++ |.++++|++|..++..+..+. +.. ..
T Consensus 190 ~e~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~i~t~~dl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~~~ 269 (451)
T TIGR01173 190 GEYYLTDVIALAVADGETVRAVQVDDSDEVLGVNDRLQLAQLERILQRRIAKKLLLAGVTLRDPARFDIRGTVEIGRDVE 269 (451)
T ss_pred CcEeHHHHHHHHHHCCCeEEEEEcCChhheecCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeEEECCccEECCCCE
Confidence 223346788888876 47999999988 999999999988876543211 000 11
Q ss_pred cCCCCCccccCccCCCeee-cCCccccceECCCCEEc-ceEEeeeEEccCcEECCCcEEe-ecEEeCCccccchhHHH-h
Q 014953 296 YDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLK-DTMMLGADFYETDAEVA-S 371 (415)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~i-~~~~i~~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~-~sii~~~~~~~~~~~~~-~ 371 (415)
+++.+.+...+.+++++.| +++.|.++.||++|+|+ ++.+.+|+||++|.||++++|. +++|+++++|+.++.+. +
T Consensus 270 i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~ 349 (451)
T TIGR01173 270 IDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNA 349 (451)
T ss_pred EcCCeEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEccceeecCc
Confidence 2222233333334444444 45555667777777777 5666777777777777766666 36665555555443321 1
Q ss_pred ------------------------------------------hhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCcc
Q 014953 372 ------------------------------------------LLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSST 408 (415)
Q Consensus 372 ------------------------------------------~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~ 408 (415)
.++++ |.||.++.|. ++.||+++.|++++.+.+.
T Consensus 350 ~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~---~~ig~~~~i~~~~~ig~~~~i~~g~~v~~~ 426 (451)
T TIGR01173 350 RIGKGSKAGHLSYLGDAEIGSNVNIGAGTITCNYDGANKHKTIIGDG---VFIGSNTQLVAPVKVGDGATIAAGSTVTKD 426 (451)
T ss_pred EECCCcEecceeeEeeeEEcCCcEECCCeEEeCcccccCCCCEECCC---cEECCCCEEECCcEECCCCEEccCCEECcc
Confidence 11222 3444444444 5677777777777777777
Q ss_pred cccccc
Q 014953 409 ISRFSL 414 (415)
Q Consensus 409 ~~~~~~ 414 (415)
+-++++
T Consensus 427 v~~~~~ 432 (451)
T TIGR01173 427 VPEGAL 432 (451)
T ss_pred CCCCcE
Confidence 776654
|
This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes. |
| >PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-41 Score=332.95 Aligned_cols=309 Identities=18% Similarity=0.235 Sum_probs=217.5
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCccc
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (415)
|++|+|||||||.|+||+ ..+||+|+|++|+ |||+|++++|.++|++++++++++..+++.+++... .
T Consensus 3 ~~~~~aiIlAaG~gtRl~---~~~pK~l~~i~gk-pli~~~i~~l~~~gi~~i~vv~~~~~~~i~~~~~~~-----~--- 70 (456)
T PRK09451 3 NSAMSVVILAAGKGTRMY---SDLPKVLHTLAGK-PMVQHVIDAANELGAQHVHLVYGHGGDLLKQTLADE-----P--- 70 (456)
T ss_pred CCCceEEEEcCCCCCcCC---CCCChhcceeCCh-hHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhhccC-----C---
Confidence 457999999999999998 4699999999999 999999999999999999999999888888776421 1
Q ss_pred CCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe--ecccChHHHHHHHHHcCCcEEEEE
Q 014953 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGADITISC 163 (415)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~--i~~~~l~~~l~~h~~~~~~~ti~~ 163 (415)
+.++.... ..|++++++.++.++.+ .++|++++||. +.+.++.+++++|.+.+ ++++.
T Consensus 71 ----~~~i~~~~---------~~Gt~~al~~a~~~l~~-----~~~vlV~~gD~P~i~~~~i~~l~~~~~~~~--~~i~~ 130 (456)
T PRK09451 71 ----LNWVLQAE---------QLGTGHAMQQAAPFFAD-----DEDILMLYGDVPLISVETLQRLRDAKPQGG--IGLLT 130 (456)
T ss_pred ----cEEEECCC---------CCCcHHHHHHHHHhhcc-----CCcEEEEeCCcccCCHHHHHHHHHHhhcCC--EEEEE
Confidence 22221111 26999999999988753 47899999998 45667899998886544 45565
Q ss_pred EEcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCC-
Q 014953 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP- 242 (415)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~- 242 (415)
.+.++ +..||++.. ++++|.+|.|||...... ..++++++|+|+|+++.|.++++...+
T Consensus 131 ~~~~~--~~~yG~v~~-~~g~V~~~~EKp~~~~~~-----------------~~~~~~~~GiYi~~~~~l~~~l~~~~~~ 190 (456)
T PRK09451 131 VKLDN--PTGYGRITR-ENGKVVGIVEQKDATDEQ-----------------RQIQEINTGILVANGADLKRWLAKLTNN 190 (456)
T ss_pred EEcCC--CCCceEEEe-cCCeEEEEEECCCCChHH-----------------hhccEEEEEEEEEEHHHHHHHHHhcCCc
Confidence 55554 567998754 578999999998642210 013578999999999988777765432
Q ss_pred --CCCcccccchhhhccc-ceEEEEE------eCce--EEecCCHHHHHHHHH--hhcC-C----CCC------------
Q 014953 243 --TANDFGSEIIPASANE-QFLKAYL------FNDY--WEDIGTIRSFFEANL--ALTA-H----PPM------------ 292 (415)
Q Consensus 243 --~~~~~~~~~l~~l~~~-~~i~~~~------~~g~--~~di~t~~~y~~an~--~~l~-~----~~~------------ 292 (415)
....+..|+++.++++ .++.+|. +.|| |.|++++++|+++|+ .++. . .+.
T Consensus 191 ~~~~e~~l~d~i~~~i~~g~~v~~~~~~~~~~~~G~~~~~di~~~~~y~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ig~ 270 (456)
T PRK09451 191 NAQGEYYITDIIALAHQEGREIVAVHPQRLSEVEGVNNRLQLARLERVYQAEQAEKLLLAGVMLRDPARFDLRGTLTHGR 270 (456)
T ss_pred cccCceeHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCEEEECCcEEECC
Confidence 1334567899998876 5899986 4566 788999999999984 2222 1 111
Q ss_pred CCccCCCCCccccCccCCCeee-cCCccccceECCCCEEc-ceEEeeeEEccCcEECCCcEEe-ecEEeCCccccch
Q 014953 293 FSFYDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLK-DTMMLGADFYETD 366 (415)
Q Consensus 293 ~~~~~~~~~~~~~~~i~~~~~i-~~~~i~~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~-~sii~~~~~~~~~ 366 (415)
-..+++.+.+...+.+++++.| +++.|+++.||++|+|+ ++.+++|+||++|+||+++.|. ++.++++++|+..
T Consensus 271 ~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~ 347 (456)
T PRK09451 271 DVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNF 347 (456)
T ss_pred CCEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccc
Confidence 0122333334444455555555 55666677777777776 5666677777777777666665 4555555444333
|
|
| >PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=328.91 Aligned_cols=340 Identities=17% Similarity=0.206 Sum_probs=241.4
Q ss_pred ceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCC
Q 014953 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGD 87 (415)
Q Consensus 8 ~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~ 87 (415)
.+.|||||||.|+||+ ...||+|+|++|+ |||+|++++|.+.+++++++++++..+.+.+++...
T Consensus 5 ~~~aiILAaG~gtR~~---~~~pK~l~~i~gk-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~----------- 69 (456)
T PRK14356 5 TTGALILAAGKGTRMH---SDKPKVLQTLLGE-PMLRFVYRALRPLFGDNVWTVVGHRADMVRAAFPDE----------- 69 (456)
T ss_pred ceeEEEEcCCCCccCC---CCCCceecccCCC-cHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhcccc-----------
Confidence 5889999999999997 5799999999999 999999999999999999999999888877665321
Q ss_pred ceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ec-ccChHHHHHHHHHcCCcEEEEEEE
Q 014953 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LY-RMDYMDFVQNHRQSGADITISCLP 165 (415)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~-~~~l~~~l~~h~~~~~~~ti~~~~ 165 (415)
.++++.... +.||+++++.++++++.. ..++|++++||+ ++ ..++.++++.|. +++++++..+
T Consensus 70 -~~~~v~~~~---------~~Gt~~al~~a~~~l~~~---~~d~vlv~~gD~P~i~~~~i~~li~~~~--~~~~~l~~~~ 134 (456)
T PRK14356 70 -DARFVLQEQ---------QLGTGHALQCAWPSLTAA---GLDRVLVVNGDTPLVTTDTIDDFLKEAA--GADLAFMTLT 134 (456)
T ss_pred -CceEEEcCC---------CCCcHHHHHHHHHHHhhc---CCCcEEEEeCCcccCCHHHHHHHHHHHh--cCCEEEEEEE
Confidence 022222111 269999999999988531 147899999998 44 455889998875 5677888877
Q ss_pred cCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCC---
Q 014953 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP--- 242 (415)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~--- 242 (415)
.++ +..|+.+.. ++|+|..+.|||+...... ...++++++|+|+|++++|..+++....
T Consensus 135 ~~~--~~~~g~v~~-~~g~V~~~~ek~~~~~~~~---------------~~~~~~~~~GiY~f~~~~l~~ll~~l~~~~~ 196 (456)
T PRK14356 135 LPD--PGAYGRVVR-RNGHVAAIVEAKDYDEALH---------------GPETGEVNAGIYYLRLDAVESLLPRLTNANK 196 (456)
T ss_pred cCC--CCCceEEEE-cCCeEEEEEECCCCChHHh---------------hhhcCeEEEEEEEEEHHHHHHHHHhccCccc
Confidence 766 567998876 5789999999886432100 0013678999999999998766654321
Q ss_pred CCCcccccchhhhccc-ceEEEEEeCc--eEEecCCHHHHHHHHHhhcCCCCCCCccCCC--------CCccccCccCCC
Q 014953 243 TANDFGSEIIPASANE-QFLKAYLFND--YWEDIGTIRSFFEANLALTAHPPMFSFYDAT--------KPIYTSRRNLPP 311 (415)
Q Consensus 243 ~~~~~~~~~l~~l~~~-~~i~~~~~~g--~~~di~t~~~y~~an~~~l~~~~~~~~~~~~--------~~~~~~~~i~~~ 311 (415)
....+..++++.+++. .++.++.+.+ +|.+|+||+||.+|+..+..+.. ..++... ..+.+.+.+.++
T Consensus 197 ~~e~~ltd~i~~~~~~g~~v~~~~~~~~~~~~~I~tp~dl~~a~~~l~~~~~-~~~~~~~~~i~~~~~~~i~~~~~i~~~ 275 (456)
T PRK14356 197 SGEYYITDLVGLAVAEGMNVLGVNCGEDPNLLGVNTPAELVRSEELLRARIV-EKHLESGVLIHAPESVRIGPRATIEPG 275 (456)
T ss_pred CCcEEHHHHHHHHHHCCCeEEEEEcCCcCeEecCcCHHHHHHHHHHHHHHHH-HHHHHcCCEEeCCCcEEECCCcEECCC
Confidence 1223456778777654 5799999866 57999999999999877764321 1111111 223334445555
Q ss_pred eee-cCCcc-ccceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHH--hhhhCCCcceEeCCCC
Q 014953 312 SKI-DDSKI-VDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVA--SLLAEGRVPVGIGENT 386 (415)
Q Consensus 312 ~~i-~~~~i-~~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~--~~~~~~~~~~~Ig~~~ 386 (415)
+.+ .++.+ .++.||++|.|+ ++.|++|+||++|.|++++.|.+++|++++.|++++.+. +.++++ |.||.++
T Consensus 276 ~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~---~~ig~~~ 352 (456)
T PRK14356 276 AEIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEG---ARVGNFV 352 (456)
T ss_pred CEEeCCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCC---CEecCCc
Confidence 555 33444 267888888888 688888888888888888888888888888888777663 455666 5666665
Q ss_pred EEeeeEECCCeEE
Q 014953 387 KIKYEQLKPICHI 399 (415)
Q Consensus 387 ~i~~~~i~~~~~i 399 (415)
.+.+++|++++.+
T Consensus 353 ~i~~~~i~~~~~i 365 (456)
T PRK14356 353 EMKKAVLGKGAKA 365 (456)
T ss_pred eeeeeEecCCcEe
Confidence 5554444444333
|
|
| >PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=322.36 Aligned_cols=359 Identities=18% Similarity=0.212 Sum_probs=248.4
Q ss_pred cccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcc
Q 014953 5 DARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVT 84 (415)
Q Consensus 5 ~~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~ 84 (415)
-|+++.|||||||.|+||++ ..||+|+|++|+ |||+|++++|.++|+++++|++++..+.+.+++.... .
T Consensus 2 ~~~~~~aiILAaG~gsR~~~---~~pK~ll~v~gk-pli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~~~---~--- 71 (446)
T PRK14353 2 TDRTCLAIILAAGEGTRMKS---SLPKVLHPVAGR-PMLAHVLAAAASLGPSRVAVVVGPGAEAVAAAAAKIA---P--- 71 (446)
T ss_pred ccccceEEEEcCCCCCccCC---CCCcccCEECCc-hHHHHHHHHHHhCCCCcEEEEECCCHHHHHHHhhccC---C---
Confidence 35678999999999999984 589999999999 9999999999999999999999999888888774311 0
Q ss_pred cCCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-eccc-ChHHHHHHHHHcCCcEEEE
Q 014953 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRM-DYMDFVQNHRQSGADITIS 162 (415)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~-~l~~~l~~h~~~~~~~ti~ 162 (415)
. +.++.... ..|++++++.++.+++.. .++|++++||. +++. ++..+++ |.+.+++++++
T Consensus 72 ---~-~~~~~~~~---------~~G~~~sl~~a~~~l~~~----~~~~lv~~~D~P~i~~~~l~~l~~-~~~~~~~~~i~ 133 (446)
T PRK14353 72 ---D-AEIFVQKE---------RLGTAHAVLAAREALAGG----YGDVLVLYGDTPLITAETLARLRE-RLADGADVVVL 133 (446)
T ss_pred ---C-ceEEEcCC---------CCCcHHHHHHHHHHHhcc----CCCEEEEeCCcccCCHHHHHHHHH-hHhcCCcEEEE
Confidence 1 11211111 269999999999888521 47899999998 5554 4777877 44556777777
Q ss_pred EEEcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCC
Q 014953 163 CLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP 242 (415)
Q Consensus 163 ~~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~ 242 (415)
..+..+ +..|+.+.. ++++|..+.|||...... ...++.++|+|+|+++.|.+++++...
T Consensus 134 ~~~~~~--~~~~g~~~~-~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~ 193 (446)
T PRK14353 134 GFRAAD--PTGYGRLIV-KGGRLVAIVEEKDASDEE-----------------RAITLCNSGVMAADGADALALLDRVGN 193 (446)
T ss_pred EEEeCC--CCcceEEEE-CCCeEEEEEECCCCChHH-----------------hhceEEEEEEEEEEHHHHHHHHHhhcc
Confidence 777654 567888777 578999999998643210 012578899999999877666665322
Q ss_pred C---CCcccccchhhhccc-ceEEEEEeC-ceEEecCCHHHHHHHHHhh---------cCCC----CCCCccCCCC----
Q 014953 243 T---ANDFGSEIIPASANE-QFLKAYLFN-DYWEDIGTIRSFFEANLAL---------TAHP----PMFSFYDATK---- 300 (415)
Q Consensus 243 ~---~~~~~~~~l~~l~~~-~~i~~~~~~-g~~~di~t~~~y~~an~~~---------l~~~----~~~~~~~~~~---- 300 (415)
. ...+..+.++.+++. .+++++..+ ++|.+|++|+||.+|+..+ +... +...++++.+
T Consensus 194 ~~~~~~~~~~d~~~~l~~~g~~v~~~~~~~~~~~~I~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ 273 (446)
T PRK14353 194 DNAKGEYYLTDIVAIARAEGLRVAVVEAPEDEVRGINSRAELAEAEAVWQARRRRAAMLAGVTLIAPETVFFSYDTVIGR 273 (446)
T ss_pred cCCCCcEeHHHHHHHHHHCCCeEEEEecChhhcccCCCHHHHHHHHHHHHHHHHHHHHHCCCEeeCCCeEEECCceEECC
Confidence 1 223456778887765 579999986 5699999999999998633 3210 1111222222
Q ss_pred --CccccCccCCCeee-cCCcc------ccceECCCCEEc-ceEEe-eeEEccCcEECCCcEEeecEEeCC---------
Q 014953 301 --PIYTSRRNLPPSKI-DDSKI------VDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGA--------- 360 (415)
Q Consensus 301 --~~~~~~~i~~~~~i-~~~~i------~~~~ig~~~~I~-~~~i~-~svig~~~~ig~~~~i~~sii~~~--------- 360 (415)
.+.+++.|++++.| +++.| .+++||++|+|+ ++.|. +|+||++|+||+++.+.+++|+++
T Consensus 274 ~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~i 353 (446)
T PRK14353 274 DVVIEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVNHLTYI 353 (446)
T ss_pred CCEECCCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCCCEECCeeEE
Confidence 33333333333333 23333 357788888887 57775 788888888888877766555544
Q ss_pred --------ccccchhHH---------HhhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 361 --------DFYETDAEV---------ASLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 361 --------~~~~~~~~~---------~~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
+.|+.++.+ .+.|+++ |.||.++.|. ++.||+++.|++++.+.+.+..+++
T Consensus 354 ~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~---~~ig~~~~i~~~~~Ig~~~~ig~~s~v~~~v~~~~~ 422 (446)
T PRK14353 354 GDATIGAGANIGAGTITCNYDGFNKHRTEIGAG---AFIGSNSALVAPVTIGDGAYIASGSVITEDVPDDAL 422 (446)
T ss_pred cCcEEcCCcEECCceeeeccccccCCCcEECCC---cEECCCCEEeCCCEECCCCEECCCCEECccCCCCCE
Confidence 334444322 2344555 6777777776 7888888999999988888877764
|
|
| >TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-40 Score=304.84 Aligned_cols=244 Identities=18% Similarity=0.275 Sum_probs=189.7
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCC-----
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYG----- 80 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~----- 80 (415)
|.+|+|||||||.||||+|+|..+||||+||+|+ |||+|++++|.++|+++|+|+++|..+++.+|+...+.+.
T Consensus 1 ~~~mkavILAaG~GTRL~PlT~~~PKpLvpV~gk-PiI~~vl~~l~~~Gi~~ivivv~~~~~~i~~~~~~~~~~~~~~~~ 79 (297)
T TIGR01105 1 MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDK-PMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred CCceEEEEECCCCCcccCcccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEecCChHHHHHHHhchHHHHHHHHH
Confidence 4589999999999999999999999999999999 9999999999999999999999999999999986432110
Q ss_pred -----------CCcccCCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecc-------
Q 014953 81 -----------SGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYR------- 142 (415)
Q Consensus 81 -----------~~~~~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~------- 142 (415)
.+..++. .+.++ .|. +++||++|++++.++++ +++|+|++||.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~-~i~~~--~q~-------~~lGtg~Av~~a~~~l~------~~~flvv~gD~l~~~~~~~~~ 143 (297)
T TIGR01105 80 RVKRQLLAEVQSICPPGV-TIMNV--RQA-------QPLGLGHSILCARPVVG------DNPFVVVLPDIIIDDATADPL 143 (297)
T ss_pred hcchhhhhhhhhcCCCCc-eEEEe--eCC-------CcCchHHHHHHHHHHhC------CCCEEEEECCeeccccccccc
Confidence 0001111 12222 222 34799999999999985 36899999999987
Q ss_pred -cChHHHHHHHHHcCCcEEEEEEEcCCCcCCcccEEEE----CCCCC---eEEEEEcCCccccccccccccccccccccc
Q 014953 143 -MDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKI----NNEGR---VLSFSEKPKGKDLKAMAVDTTVLGLSKQEA 214 (415)
Q Consensus 143 -~~l~~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~----d~~~~---v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~ 214 (415)
.++.+++++|.++++.++++. ..+. .+.+||++.. |++|+ |.++.|||..+..
T Consensus 144 ~~~l~~li~~~~~~~~~~~~~~-~~~~-~~~~yGvv~~~~~~d~~g~v~~I~~~~EKP~~~~~----------------- 204 (297)
T TIGR01105 144 RYNLAAMIARFNETGRSQVLAK-RMPG-DLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQT----------------- 204 (297)
T ss_pred hhHHHHHHHHHHHhCCcEEEEE-EcCC-CCccceEEEecccccCCCCeeeEeEEEECCCCccc-----------------
Confidence 589999999987777664443 3332 2689999998 44564 5889999864321
Q ss_pred ccccceeeeeEEEEeHHHHHHHHhhhCCC--CCcccccchhhhcccceEEEEEeCceEEecCCHHHHHHHHHhhc
Q 014953 215 EEKPYIASMGVYLFKKEILLNLLRWRFPT--ANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALT 287 (415)
Q Consensus 215 ~~~~~l~~~Giyi~~~~~l~~~l~~~~~~--~~~~~~~~l~~l~~~~~i~~~~~~g~~~di~t~~~y~~an~~~l 287 (415)
..++++++|+|+|++++|. .++...+. ......|+++.+++++++++|.++|+|+|+|+|++|.+||.++.
T Consensus 205 -~~s~~~~~GiYi~~~~i~~-~l~~~~~~~~ge~~ltd~i~~l~~~~~v~~~~~~g~w~DiG~p~~~~~a~~~~~ 277 (297)
T TIGR01105 205 -LDSDLMAVGRYVLSADIWA-ELERTEPGAWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYG 277 (297)
T ss_pred -CCcCEEEEEEEEECHHHHH-HHhcCCCCCCCeeeHHHHHHHHHhcCCEEEEEeccEEECCCCHHHHHHHHHHHH
Confidence 1247899999999999886 44443221 12224588999999999999999999999999999999998863
|
GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose |
| >PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=321.81 Aligned_cols=356 Identities=20% Similarity=0.244 Sum_probs=239.8
Q ss_pred cceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccC
Q 014953 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (415)
++++|||||||.|+||+ ..+||+|+|++|+ |||+|++++|.++|+++++++++++.+++.+++...
T Consensus 1 m~~~avIlAaG~g~Rl~---~~~pK~ll~i~Gk-pli~~~l~~l~~~gi~~iivvv~~~~~~i~~~~~~~---------- 66 (458)
T PRK14354 1 MNRYAIILAAGKGTRMK---SKLPKVLHKVCGK-PMVEHVVDSVKKAGIDKIVTVVGHGAEEVKEVLGDR---------- 66 (458)
T ss_pred CCceEEEEeCCCCcccC---CCCChhhCEeCCc-cHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcCC----------
Confidence 46789999999999998 4699999999999 999999999999999999999999988888776321
Q ss_pred CceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe--ecccChHHHHHHHHHcCCcEEEEEE
Q 014953 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGADITISCL 164 (415)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~--i~~~~l~~~l~~h~~~~~~~ti~~~ 164 (415)
+.++.... ..|++++++.++.++++. .++|++++||. +...++.+++++|.+.+++.|+++.
T Consensus 67 ---~~~~~~~~---------~~g~~~al~~a~~~l~~~----~d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~ 130 (458)
T PRK14354 67 ---SEFALQEE---------QLGTGHAVMQAEEFLADK----EGTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTA 130 (458)
T ss_pred ---cEEEEcCC---------CCCHHHHHHHHHHHhccc----CCeEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEE
Confidence 11211111 269999999999988531 36799999997 3456689999999888888888877
Q ss_pred EcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC-
Q 014953 165 PMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT- 243 (415)
Q Consensus 165 ~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~- 243 (415)
..++ +..|+.+..|++++|..+.|||..... + ...++.++|+|+|+++.|...++.....
T Consensus 131 ~~~~--~~~~g~v~~d~~~~V~~~~ek~~~~~~---------------~--~~~~~~~~Giy~f~~~~l~~~l~~~~~~~ 191 (458)
T PRK14354 131 IAEN--PTGYGRIIRNENGEVEKIVEQKDATEE---------------E--KQIKEINTGTYCFDNKALFEALKKISNDN 191 (458)
T ss_pred EcCC--CCCceEEEEcCCCCEEEEEECCCCChH---------------H--hcCcEEEEEEEEEEHHHHHHHHHHhCccc
Confidence 6654 566888888888999999998753110 0 0135789999999998765666543221
Q ss_pred --CCcccccchhhhccc-ceEEEEEeCce--EEecCCHHHHHHHHHhhcCCC------CCCCccCC-------CCCcccc
Q 014953 244 --ANDFGSEIIPASANE-QFLKAYLFNDY--WEDIGTIRSFFEANLALTAHP------PMFSFYDA-------TKPIYTS 305 (415)
Q Consensus 244 --~~~~~~~~l~~l~~~-~~i~~~~~~g~--~~di~t~~~y~~an~~~l~~~------~~~~~~~~-------~~~~~~~ 305 (415)
...+..++++.+++. .++++|.++|+ |+++++++||..|+..+..+. +..+++++ ...+.++
T Consensus 192 ~~~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~~~~Dl~~a~~ll~~~~~~~~~~~~~~~i~~~~~~i~~~~~ig~~ 271 (458)
T PRK14354 192 AQGEYYLTDVIEILKNEGEKVGAYQTEDFEESLGVNDRVALAEAEKVMRRRINEKHMVNGVTIIDPESTYIDADVEIGSD 271 (458)
T ss_pred cCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEccCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEECCCcEECCC
Confidence 122345777777754 57999999876 567789999999886543211 11122222 2222222
Q ss_pred ------------CccCCCeee-cCCccccceECCCCEEcceEEeeeEEccCcEECCCcEEe-ecEEeCCccccchhHHH-
Q 014953 306 ------------RRNLPPSKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLK-DTMMLGADFYETDAEVA- 370 (415)
Q Consensus 306 ------------~~i~~~~~i-~~~~i~~~~ig~~~~I~~~~i~~svig~~~~ig~~~~i~-~sii~~~~~~~~~~~~~- 370 (415)
+.++.++.| .++.|.+++||++|+|+++++.+|+||++|.||+++.|. +++|+++++++.++.+.
T Consensus 272 ~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~ 351 (458)
T PRK14354 272 TVIEPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTITNSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKK 351 (458)
T ss_pred CEEeCCeEEecceEECCCCEECCCcEEeccEECCCCEEEEEEEeCCEECCCcEECCceEecCCCEEeCCcEECCceEEee
Confidence 223333333 344444556666666655555566666666666666666 45555555554443321
Q ss_pred ------------------------------------------hhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCc
Q 014953 371 ------------------------------------------SLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSS 407 (415)
Q Consensus 371 ------------------------------------------~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~ 407 (415)
+.++++ +.||.++.+. ++.||+++.|++++.+.+
T Consensus 352 ~~i~~~~~i~~~~~~~~~~ig~~~~ig~~~~~~~~~~~~~~~~~igd~---~~ig~~s~i~~~~~ig~~~~v~~~~~v~~ 428 (458)
T PRK14354 352 STIGEGTKVSHLTYIGDAEVGENVNIGCGTITVNYDGKNKFKTIIGDN---AFIGCNSNLVAPVTVGDNAYIAAGSTITK 428 (458)
T ss_pred eEECCCCEecceeeecCcccCCceEEcCceeecccccccccCCEECCC---cEEccCCEEeCCcEECCCCEECCCCEECC
Confidence 111222 5555566655 677778888888887777
Q ss_pred ccccccc
Q 014953 408 TISRFSL 414 (415)
Q Consensus 408 ~~~~~~~ 414 (415)
.+-++++
T Consensus 429 ~~~~~~~ 435 (458)
T PRK14354 429 DVPEDAL 435 (458)
T ss_pred CCCCCCE
Confidence 7766654
|
|
| >PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=317.40 Aligned_cols=302 Identities=20% Similarity=0.235 Sum_probs=207.9
Q ss_pred eEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCc
Q 014953 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (415)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (415)
|+|||||||.|+||++ .+||+|+|++|+ |||+|++++|.+.+ ++|+|++++..+.+.+++.. +
T Consensus 1 m~avIlA~G~gtRl~~---~~pK~l~~v~gk-pli~~~l~~l~~~~-~~i~vv~~~~~~~i~~~~~~------~------ 63 (448)
T PRK14357 1 MRALVLAAGKGTRMKS---KIPKVLHKISGK-PMINWVIDTAKKVA-QKVGVVLGHEAELVKKLLPE------W------ 63 (448)
T ss_pred CeEEEECCCCCccCCC---CCCceeeEECCe-eHHHHHHHHHHhcC-CcEEEEeCCCHHHHHHhccc------c------
Confidence 7899999999999984 799999999999 99999999999875 89999999988877777632 1
Q ss_pred eEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe--ecccChHHHHHHHHHcCCcEEEEEEEc
Q 014953 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGADITISCLPM 166 (415)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~--i~~~~l~~~l~~h~~~~~~~ti~~~~~ 166 (415)
+.++. +. ..+|++++++.++.+++. .++|++++||. +.+.++.++++.|+++++++|+++.+.
T Consensus 64 -~~~~~--~~-------~~~g~~~ai~~a~~~l~~-----~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~ 128 (448)
T PRK14357 64 -VKIFL--QE-------EQLGTAHAVMCARDFIEP-----GDDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADL 128 (448)
T ss_pred -cEEEe--cC-------CCCChHHHHHHHHHhcCc-----CCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEc
Confidence 12221 11 136999999999998853 47899999997 556778999999998899999998887
Q ss_pred CCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC---
Q 014953 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT--- 243 (415)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~--- 243 (415)
++ +..|+.+..+ ++++ .+.|++..+... ...+++++|+|+|++++|.+++++..+.
T Consensus 129 ~~--~~~~g~v~~d-~g~v-~~~e~~~~~~~~-----------------~~~~~~~~GiYv~~~~~l~~~~~~~~~~~~~ 187 (448)
T PRK14357 129 ED--PTGYGRIIRD-GGKY-RIVEDKDAPEEE-----------------KKIKEINTGIYVFSGDFLLEVLPKIKNENAK 187 (448)
T ss_pred CC--CCCcEEEEEc-CCeE-EEEECCCCChHH-----------------hcCcEEEeEEEEEEHHHHHHHHHhhCcCCCC
Confidence 65 5779998887 6788 788876532110 0125789999999999987766643221
Q ss_pred CCcccccchhhhcccceEEEEEeCce--EEecCCHHHHHHHHHhhcCCC------CCCC-------ccCCCCCcccc---
Q 014953 244 ANDFGSEIIPASANEQFLKAYLFNDY--WEDIGTIRSFFEANLALTAHP------PMFS-------FYDATKPIYTS--- 305 (415)
Q Consensus 244 ~~~~~~~~l~~l~~~~~i~~~~~~g~--~~di~t~~~y~~an~~~l~~~------~~~~-------~~~~~~~~~~~--- 305 (415)
...+..|+++.+ .++.+|...+| |.+++++++|..+...+..+. .... .+++.+.+..+
T Consensus 188 ~~~~~~d~i~~~---~~v~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~i 264 (448)
T PRK14357 188 GEYYLTDAVNFA---EKVRVVKTEDLLEITGVNTRIQLAWLEKQLRMRILEELMENGVTILDPNTTYIHYDVEIGMDTII 264 (448)
T ss_pred CeEEHHHHHHhh---hheeEEecCCHHHEEccCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEEccceEECCCcEE
Confidence 112334666655 35888888888 677789999988765542110 1111 22222233333
Q ss_pred ---------CccCCCeee-cCCccccceECCCCEEcceEEeeeEEccCcEECCCcEEee-cEEeCCccccch
Q 014953 306 ---------RRNLPPSKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKD-TMMLGADFYETD 366 (415)
Q Consensus 306 ---------~~i~~~~~i-~~~~i~~~~ig~~~~I~~~~i~~svig~~~~ig~~~~i~~-sii~~~~~~~~~ 366 (415)
+.++++++| +++.+.+|+||++|+|..+.+.+|+|+++|.||++++|.+ ++++++++|+.+
T Consensus 265 ~~~~~I~~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~ 336 (448)
T PRK14357 265 YPMTFIEGKTRIGEDCEIGPMTRIVDCEIGNNVKIIRSECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNF 336 (448)
T ss_pred cCCcEEEeeeEECCCcEECCCceecccEECCCCEEeeeEEEEEEEeCCcEECCCcEECCcccccCCcEecCc
Confidence 333333444 3444455666777766545556666666666666666643 555555555444
|
|
| >PRK10122 GalU regulator GalF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-39 Score=299.16 Aligned_cols=246 Identities=18% Similarity=0.270 Sum_probs=192.8
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCC-----
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYG----- 80 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~----- 80 (415)
|.+|+|||||||.||||+|+|..+||||+||+|| |||+|+++++.++|+++|+|+++|..+++.+|+...+.+.
T Consensus 1 ~~~mkavIlAaG~GtRl~PlT~~~PK~llpi~gk-piI~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~l~~~~~~ 79 (297)
T PRK10122 1 MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDK-PMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred CCceEEEEECCcCCcccCcccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEcCCChHHHHHHHhcchhHHHHHhh
Confidence 5689999999999999999999999999999999 9999999999999999999999999999999996433110
Q ss_pred -----------CCcccCCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecc-------
Q 014953 81 -----------SGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYR------- 142 (415)
Q Consensus 81 -----------~~~~~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~------- 142 (415)
....++ +.+....|. .++||++|++.+++++. .++|+|++||.+++
T Consensus 80 ~~k~~~l~~~~~~~~~~---~~i~~~~q~-------~~lGtg~al~~a~~~l~------~~~fvvi~gD~l~~~~~~~~~ 143 (297)
T PRK10122 80 RVKRQLLAEVQSICPPG---VTIMNVRQG-------QPLGLGHSILCARPAIG------DNPFVVVLPDVVIDDASADPL 143 (297)
T ss_pred cchhhhHHhhhhccCCC---ceEEEeecC-------CcCchHHHHHHHHHHcC------CCCEEEEECCeeccCcccccc
Confidence 000011 122222232 14799999999999984 36899999999886
Q ss_pred -cChHHHHHHHHHcCCcEEEEEEEcCCCcCCcccEEEEC----CCC---CeEEEEEcCCccccccccccccccccccccc
Q 014953 143 -MDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN----NEG---RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEA 214 (415)
Q Consensus 143 -~~l~~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d----~~~---~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~ 214 (415)
.|+.++++.|.+.+++++++....+ .+.+||++..| +++ +|..+.|||..+..
T Consensus 144 ~~dl~~li~~h~~~~~~~~~~~~~~~--~~~~yGvv~~d~~~~~~g~v~~I~~~~EKp~~~~~----------------- 204 (297)
T PRK10122 144 RYNLAAMIARFNETGRSQVLAKRMPG--DLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQT----------------- 204 (297)
T ss_pred chhHHHHHHHHHHhCCcEEEEEECCC--CCCCceEEEecCcccCCCCeeeEEEEEECCCCccc-----------------
Confidence 4799999999888877554443333 47889999986 355 68899999864321
Q ss_pred ccccceeeeeEEEEeHHHHHHHHhhhCCC--CCcccccchhhhcccceEEEEEeCceEEecCCHHHHHHHHHhh-cCC
Q 014953 215 EEKPYIASMGVYLFKKEILLNLLRWRFPT--ANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLAL-TAH 289 (415)
Q Consensus 215 ~~~~~l~~~Giyi~~~~~l~~~l~~~~~~--~~~~~~~~l~~l~~~~~i~~~~~~g~~~di~t~~~y~~an~~~-l~~ 289 (415)
..++++++|+|+|++++|..+. ...+. ......++++.+++++++++|.++|+|+|||+|++|.+|+.++ +..
T Consensus 205 -~~s~~~~~GiYi~~~~i~~~l~-~~~~~~~~e~~ltd~i~~l~~~~~v~~~~~~G~w~DiG~p~~~~~a~~~~~~~~ 280 (297)
T PRK10122 205 -LDSDLMAVGRYVLSADIWPELE-RTEPGAWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYGLRN 280 (297)
T ss_pred -CCccEEEEEEEEECHHHHHHHH-hCCCCCCCeeeHHHHHHHHHhCCCEEEEEeCCEEEcCCCHHHHHHHHHHHHhcC
Confidence 1247899999999999987553 32221 2234468899999999999999999999999999999999998 543
|
|
| >PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=293.46 Aligned_cols=239 Identities=37% Similarity=0.640 Sum_probs=191.0
Q ss_pred EEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEE-EEEcccChhHHHHHHHhhccCCCCcccCCc
Q 014953 10 AAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKV-YILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (415)
Q Consensus 10 ~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I-~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (415)
||||||||.||||+|+|.++||||+|++|++|||+|+|++|.++|++++ +|+++++.+.+.+|+.... .++.
T Consensus 1 kavIla~G~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~~g~~~ii~V~~~~~~~~i~~~~~~~~------~~~~- 73 (248)
T PF00483_consen 1 KAVILAGGKGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLANAGIKEIIVVVNGYKEEQIEEHLGSGY------KFGV- 73 (248)
T ss_dssp EEEEEEESCCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHHTTCSEEEEEEETTTHHHHHHHHTTSG------GGTE-
T ss_pred CEEEECCCCCccCchhhhccccccceecCCCcchhhhhhhhcccCCceEEEEEeecccccccccccccc------cccc-
Confidence 7999999999999999999999999999998999999999999999995 5555577788999986543 2221
Q ss_pred eEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcE--EEEEEEc
Q 014953 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADI--TISCLPM 166 (415)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~--ti~~~~~ 166 (415)
.+.++. +.. ..||++||+.+.+++.... ..++|++++||++++.++.++++.|+++++++ ++...+.
T Consensus 74 ~i~~i~--~~~-------~~Gta~al~~a~~~i~~~~--~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 142 (248)
T PF00483_consen 74 KIEYIV--QPE-------PLGTAGALLQALDFIEEED--DDEDFLVLNGDIIFDDDLQDMLEFHRESNADGTVTLLVVPV 142 (248)
T ss_dssp EEEEEE--ESS-------SSCHHHHHHHTHHHHTTSE--E-SEEEEETTEEEESTTHHHHHHHHHHHSSCESEEEEEEES
T ss_pred cceeee--ccc-------ccchhHHHHHHHHHhhhcc--ccceEEEEeccccccchhhhHHHhhhccccccccccccccc
Confidence 133332 221 2599999999999997510 01349999999999999999999999998844 4444444
Q ss_pred CCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHh--hhCCCC
Q 014953 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLR--WRFPTA 244 (415)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~--~~~~~~ 244 (415)
. .++.||++..|++++|.++.|||..+.. ++++++|+|+|++++|..+++ ......
T Consensus 143 ~--~~~~~g~v~~d~~~~V~~~~EKP~~~~~--------------------~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~ 200 (248)
T PF00483_consen 143 E--DPSRYGVVEVDEDGRVIRIVEKPDNPNA--------------------SNLINTGIYIFKPEIFDFLLEMIKENARG 200 (248)
T ss_dssp S--GGGGSEEEEEETTSEEEEEEESCSSHSH--------------------SSEEEEEEEEEETHHHHHHHHHHHTCTTS
T ss_pred c--ccccceeeeeccceeEEEEeccCccccc--------------------ceeccCceEEEcchHHHHHhhhhhccchh
Confidence 3 4789999999988999999999986531 368999999999999976654 222345
Q ss_pred Ccccccchhhhcccc-eEEEEEeCc--eEEecCCHHHHHHHHHhhcC
Q 014953 245 NDFGSEIIPASANEQ-FLKAYLFND--YWEDIGTIRSFFEANLALTA 288 (415)
Q Consensus 245 ~~~~~~~l~~l~~~~-~i~~~~~~g--~~~di~t~~~y~~an~~~l~ 288 (415)
.++..++++.+++++ .+.++..++ +|.|||||++|++||+.+++
T Consensus 201 ~~~l~d~i~~~~~~~~~~~~~~~~~~~~w~dig~~~~~~~a~~~~~~ 247 (248)
T PF00483_consen 201 EDFLTDAIPKLLEQGKKVYAFIFEGNAYWIDIGTPEDYLEANMDLLN 247 (248)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEEHSSEE-EEETSSHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHcCCceEEEEecCCeEEEECCCHHHHHHHHHHHhc
Confidence 667789999998876 566888898 79999999999999999875
|
; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C .... |
| >cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=287.65 Aligned_cols=232 Identities=26% Similarity=0.417 Sum_probs=194.0
Q ss_pred eEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCc
Q 014953 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (415)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (415)
|+|||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|+++++.+++.+|+.+.. ..++
T Consensus 1 m~~iIlAaG~g~R~~~lt~~~pK~llpv~g~-pli~~~l~~l~~~g~~~v~iv~~~~~~~~~~~l~~~~-----~~~~-- 72 (233)
T cd06425 1 MKALILVGGYGTRLRPLTLTVPKPLVEFCNK-PMIEHQIEALAKAGVKEIILAVNYRPEDMVPFLKEYE-----KKLG-- 72 (233)
T ss_pred CcEEEecCCCccccCccccCCCCccCeECCc-chHHHHHHHHHHCCCcEEEEEeeeCHHHHHHHHhccc-----ccCC--
Confidence 7899999999999999999999999999999 9999999999999999999999999999999886320 0111
Q ss_pred eEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEEEcCC
Q 014953 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDD 168 (415)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~~~~~ 168 (415)
+.++...+. ...|++++++.++.+++.. .++|++++||++++.++.+++++|+++++++|+++.+.++
T Consensus 73 -~~i~~~~~~-------~~~G~~~al~~a~~~~~~~----~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (233)
T cd06425 73 -IKITFSIET-------EPLGTAGPLALARDLLGDD----DEPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKVED 140 (233)
T ss_pred -eEEEeccCC-------CCCccHHHHHHHHHHhccC----CCCEEEEeCCEeeCCCHHHHHHHHHHcCCCEEEEEEEcCC
Confidence 233322221 1369999999999988531 3689999999999999999999999999999999987764
Q ss_pred CcCCcccEEEECC-CCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCCcc
Q 014953 169 SRASDFGLMKINN-EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDF 247 (415)
Q Consensus 169 ~~~~~~g~v~~d~-~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~~~~~ 247 (415)
+..||++.+|+ +++|.++.|||..+. ++++++|+|+|++++|..+ .. ...++
T Consensus 141 --~~~~g~v~~d~~~~~v~~~~ekp~~~~---------------------~~~~~~Giyi~~~~~l~~l-~~---~~~~~ 193 (233)
T cd06425 141 --PSKYGVVVHDENTGRIERFVEKPKVFV---------------------GNKINAGIYILNPSVLDRI-PL---RPTSI 193 (233)
T ss_pred --ccccCeEEEcCCCCEEEEEEECCCCCC---------------------CCEEEEEEEEECHHHHHhc-cc---Ccccc
Confidence 57899999987 789999999987542 3678999999999999654 32 12344
Q ss_pred cccchhhhcccceEEEEEeCceEEecCCHHHHHHHHHhhc
Q 014953 248 GSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALT 287 (415)
Q Consensus 248 ~~~~l~~l~~~~~i~~~~~~g~~~di~t~~~y~~an~~~l 287 (415)
..++++.+++++++.+|+++|+|.||+|+++|++|++.+|
T Consensus 194 ~~~~~~~l~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l 233 (233)
T cd06425 194 EKEIFPKMASEGQLYAYELPGFWMDIGQPKDFLKGMSLYL 233 (233)
T ss_pred hhhhHHHHHhcCCEEEEeeCCEEEcCCCHHHHHHHHHHhC
Confidence 5688999999999999999999999999999999998765
|
GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation. |
| >cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=290.81 Aligned_cols=235 Identities=26% Similarity=0.398 Sum_probs=192.0
Q ss_pred EEEEcCC--CCCcccccccCCcccceeeCCcceeehhehhhhhc-cCCcEEEEEcccChhHHHHHHHhhccCCCCcccCC
Q 014953 11 AVILGGG--AGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCIN-SGINKVYILTQYNSASLNRHLARAYNYGSGVTFGD 87 (415)
Q Consensus 11 aVILAaG--~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~-~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~ 87 (415)
||||||| .||||+|+|..+||||+||+|+ |||+|+|++|.+ +|+++|+|++++..+++.+|+.... ..++.
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv~g~-plI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~~~~-----~~~~~ 74 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGK-PMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQ-----QEFNV 74 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeECCe-eHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHhcc-----cccCc
Confidence 6999999 8999999999999999999999 999999999999 6999999999999999999986421 01111
Q ss_pred ceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEEEcC
Q 014953 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMD 167 (415)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~~~~ 167 (415)
.+.++. +. ...||+++++.++++++.. ..++|+|++||++++.|+.+++++|+++++++|+++.+.+
T Consensus 75 -~i~~~~--~~-------~~~Gt~~al~~a~~~l~~~---~~~~~lv~~gD~~~~~dl~~~~~~h~~~~~~~tl~~~~~~ 141 (257)
T cd06428 75 -PIRYLQ--EY-------KPLGTAGGLYHFRDQILAG---NPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEAS 141 (257)
T ss_pred -eEEEec--CC-------ccCCcHHHHHHHHHHhhcc---CCCCEEEEcCCeecCCCHHHHHHHHHHcCCCEEEEEEEcc
Confidence 122222 21 1369999999999988531 1368999999999999999999999999999999998875
Q ss_pred CCcCCcccEEEEC-CCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCC----
Q 014953 168 DSRASDFGLMKIN-NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP---- 242 (415)
Q Consensus 168 ~~~~~~~g~v~~d-~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~---- 242 (415)
.+.+..||++.+| ++++|..+.|||..+. ++++++|+|+|++++|..+ ....+
T Consensus 142 ~~~~~~yg~v~~d~~~g~v~~~~Ekp~~~~---------------------~~~~~~Giyi~~~~~~~~i-~~~~~~~~~ 199 (257)
T cd06428 142 REQASNYGCIVEDPSTGEVLHYVEKPETFV---------------------SDLINCGVYLFSPEIFDTI-KKAFQSRQQ 199 (257)
T ss_pred ccccccccEEEEeCCCCeEEEEEeCCCCcc---------------------cceEEEEEEEECHHHHHHH-hhhcccccc
Confidence 4446889999988 6789999999987432 3689999999999998544 33211
Q ss_pred --------------CCCcccccchhhhcccceEEEEEeCceEEecCCHHHHHHHHHhh
Q 014953 243 --------------TANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLAL 286 (415)
Q Consensus 243 --------------~~~~~~~~~l~~l~~~~~i~~~~~~g~~~di~t~~~y~~an~~~ 286 (415)
...++..++++.+++++++++|.++|||.||+|+++|++||+.+
T Consensus 200 e~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~~~~g~w~dig~~~~~~~a~~~~ 257 (257)
T cd06428 200 EAQLGDDNNREGRAEVIRLEQDVLTPLAGSGKLYVYKTDDFWSQIKTAGSAIYANRLY 257 (257)
T ss_pred ccccccccccccccceeeehhhhhhHHhccCCEEEecCCCeeecCCCHHHHHhHhhcC
Confidence 11235578999999999999999999999999999999999864
|
N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre |
| >PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-38 Score=311.65 Aligned_cols=353 Identities=18% Similarity=0.237 Sum_probs=238.3
Q ss_pred eEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCc
Q 014953 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (415)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (415)
|.+||||||.|+||++ .+||+|+|++|+ |||+|++++|.++|++++++++++..+.+.+++.+. .
T Consensus 2 ~~~iIlAaG~gsR~~~---~~pK~ll~v~gk-pli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~---~-------- 66 (450)
T PRK14360 2 LAVAILAAGKGTRMKS---SLPKVLHPLGGK-SLVERVLDSCEELKPDRRLVIVGHQAEEVEQSLAHL---P-------- 66 (450)
T ss_pred ceEEEEeCCCCccCCC---CCChhcCEECCh-hHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhccc---C--------
Confidence 6799999999999985 689999999999 999999999999999999999999888888777431 0
Q ss_pred eEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe--ecccChHHHHHHHHHcCCcEEEEEEEc
Q 014953 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGADITISCLPM 166 (415)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~--i~~~~l~~~l~~h~~~~~~~ti~~~~~ 166 (415)
.+.++.... +.|++++++.++.++++. .++|++++||. +...++.++++.|++.+++++++..+.
T Consensus 67 ~i~~v~~~~---------~~G~~~sv~~~~~~l~~~----~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~ 133 (450)
T PRK14360 67 GLEFVEQQP---------QLGTGHAVQQLLPVLKGF----EGDLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARL 133 (450)
T ss_pred CeEEEEeCC---------cCCcHHHHHHHHHHhhcc----CCcEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEec
Confidence 133332111 259999999998888531 36799999998 455678999999998888888877766
Q ss_pred CCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC---
Q 014953 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT--- 243 (415)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~--- 243 (415)
++ +..|+.+..|++++|..+.|||...... ..++++++|+|+|+++.|.+++++..+.
T Consensus 134 ~~--~~~~g~~~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~ 194 (450)
T PRK14360 134 PN--PKGYGRVFCDGNNLVEQIVEDRDCTPAQ-----------------RQNNRINAGIYCFNWPALAEVLPKLSSNNDQ 194 (450)
T ss_pred CC--CCCccEEEECCCCCEEEEEECCCCChhH-----------------hcCcEEEEEEEEEEHHHHHHHHhhccccccC
Confidence 55 5669999898889999999998642110 0236889999999999888777654322
Q ss_pred CCcccccchhhhcccceEEEEEeCce--EEecCCHHHHHHHHHhhcCCC------CCCCccCCC----------------
Q 014953 244 ANDFGSEIIPASANEQFLKAYLFNDY--WEDIGTIRSFFEANLALTAHP------PMFSFYDAT---------------- 299 (415)
Q Consensus 244 ~~~~~~~~l~~l~~~~~i~~~~~~g~--~~di~t~~~y~~an~~~l~~~------~~~~~~~~~---------------- 299 (415)
...+..+.++.+. ++..+.+.++ |..+++++++..+...+.... +...+++++
T Consensus 195 ~e~~~td~i~~~~---~~~~~~v~~~~~~~~i~~~~dl~~~~~~l~~~~~~~~~d~~~~~i~~~~~~i~~~~~ig~~~~i 271 (450)
T PRK14360 195 KEYYLTDTVSLLD---PVMAVEVEDYQEINGINDRKQLAQCEEILQNRIKEKWMLAGVTFIDPASCTISETVELGPDVII 271 (450)
T ss_pred CceeHHHHHHHHh---hceEEecCCHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCcEEecCCeEEEeCCEEECCCCEE
Confidence 1223344555542 3566667765 566999999998876543211 111122221
Q ss_pred ---CCccccCccCCCeee-cCCccccceECCCCEEcceEEeeeEEccCcEECCCcEEe-ecEEeCCccccchhHHH----
Q 014953 300 ---KPIYTSRRNLPPSKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLK-DTMMLGADFYETDAEVA---- 370 (415)
Q Consensus 300 ---~~~~~~~~i~~~~~i-~~~~i~~~~ig~~~~I~~~~i~~svig~~~~ig~~~~i~-~sii~~~~~~~~~~~~~---- 370 (415)
..+...+.+++++.| .++.|.+++||++|+|+++.+.+|+||++|.||++++|. +++|++++.|..++.+.
T Consensus 272 ~~~~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~i 351 (450)
T PRK14360 272 EPQTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQL 351 (450)
T ss_pred CCCCEEeCCcEECCCCEECCCcEEEEEEEcCCCEEeeeEEeeccccCCcEECCCCEECCCCEEeCceEECCCEEEecccc
Confidence 222223334444444 445555556666666654555566666666666666665 36665555555444321
Q ss_pred ---------------------------------------hhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCcccc
Q 014953 371 ---------------------------------------SLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSSTIS 410 (415)
Q Consensus 371 ---------------------------------------~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~ 410 (415)
+.++++ |.||.++.|. ++.||+++.|++++.+.+.|.
T Consensus 352 ~~~~~i~~~~~~~~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~---~~iG~~~~i~~~~~ig~~~~v~~~~~v~~~~~ 428 (450)
T PRK14360 352 GEGSKVNHLSYIGDATLGEQVNIGAGTITANYDGVKKHRTVIGDR---SKTGANSVLVAPITLGEDVTVAAGSTITKDVP 428 (450)
T ss_pred CCCcEeccceecCCceecCCcEECccceeccccccccCCcEeCCC---eEeCCCCEEeCCcEECCCCEECCCCEECccCC
Confidence 122333 4555555555 677777777777777777777
Q ss_pred cccc
Q 014953 411 RFSL 414 (415)
Q Consensus 411 ~~~~ 414 (415)
+++.
T Consensus 429 ~~~~ 432 (450)
T PRK14360 429 DNSL 432 (450)
T ss_pred CCCE
Confidence 6653
|
|
| >PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=283.14 Aligned_cols=235 Identities=23% Similarity=0.391 Sum_probs=187.3
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEccc-ChhHHHHHHHhhccCCCCcc
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQY-NSASLNRHLARAYNYGSGVT 84 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~-~~~~i~~~l~~~~~~~~~~~ 84 (415)
|+.|+|||||||.||||+|+|..+||+|+||+|| |||+|+|++|..+|+++|++++.+ ..+.+.+|+.+ +..
T Consensus 1 m~~~kaIILAgG~GtRL~PlT~~~pK~Llpv~gk-PmI~~~l~~l~~aGi~~I~ii~~~~~~~~~~~~l~~------g~~ 73 (292)
T PRK15480 1 MKTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGD------GSQ 73 (292)
T ss_pred CCceEEEEECCCcccccCcccCCCCceEeEECCE-EHHHHHHHHHHHCCCCEEEEEecCCchHHHHHHHcC------ccc
Confidence 5679999999999999999999999999999999 999999999999999999977654 45667777643 334
Q ss_pred cCCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCee-cccChHHHHHHHHHcCCcEEEEE
Q 014953 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHL-YRMDYMDFVQNHRQSGADITISC 163 (415)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i-~~~~l~~~l~~h~~~~~~~ti~~ 163 (415)
|+.. +.+. .|. .+.|+++|+..+.+++. .++|++++||.+ ++.++.++++.|.++++++|+++
T Consensus 74 ~g~~-i~y~--~q~-------~~~Gta~Al~~a~~~i~------~~~~~lv~gD~i~~~~~l~~ll~~~~~~~~~~tv~~ 137 (292)
T PRK15480 74 WGLN-LQYK--VQP-------SPDGLAQAFIIGEEFIG------GDDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFA 137 (292)
T ss_pred cCce-eEEE--ECC-------CCCCHHHHHHHHHHHhC------CCCEEEEECCeeeeccCHHHHHHHHHhCCCCeEEEE
Confidence 5432 2222 222 13699999999999985 356888999975 58899999999988888899988
Q ss_pred EEcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC
Q 014953 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (415)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~ 243 (415)
.++++ +++||++.+|++|+|..+.|||..+. ++++++|+|+|+++++.. ++...+.
T Consensus 138 ~~v~~--p~~yGvv~~d~~g~v~~i~EKP~~p~---------------------s~~a~~GiY~~~~~v~~~-~~~~~~~ 193 (292)
T PRK15480 138 YHVND--PERYGVVEFDQNGTAISLEEKPLQPK---------------------SNYAVTGLYFYDNDVVEM-AKNLKPS 193 (292)
T ss_pred EEcCC--cccCcEEEECCCCcEEEEEECCCCCC---------------------CCEEEEEEEEEChHHHHH-HhhcCCC
Confidence 88765 68999999998899999999997542 478899999999998864 4433222
Q ss_pred --CCcccccchhhhcccceEEE-EEeCce-EEecCCHHHHHHHHHhhc
Q 014953 244 --ANDFGSEIIPASANEQFLKA-YLFNDY-WEDIGTIRSFFEANLALT 287 (415)
Q Consensus 244 --~~~~~~~~l~~l~~~~~i~~-~~~~g~-~~di~t~~~y~~an~~~l 287 (415)
.+....++++.+++++++.+ +...|+ |.|+||+++|.+|+..+.
T Consensus 194 ~~ge~~itd~~~~~l~~g~~~~~~~~~g~~W~DiGt~~~l~~a~~~~~ 241 (292)
T PRK15480 194 ARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIA 241 (292)
T ss_pred CCCeeEhHHHHHHHHhcCCeEEEEecCCcEEECCCCHHHHHHHHHHHH
Confidence 11123688888888777654 456784 999999999999998775
|
|
| >TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-37 Score=280.80 Aligned_cols=234 Identities=26% Similarity=0.355 Sum_probs=190.3
Q ss_pred EEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccC--C
Q 014953 10 AAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG--D 87 (415)
Q Consensus 10 ~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~--~ 87 (415)
+|||||||.|+||+|+|..+||+|+||+|+ |||+|+++++.++|+++|+|+++|..+++.+|+.+....+.+.++. .
T Consensus 1 kavilaaG~gtRl~~~t~~~pK~llpv~g~-pii~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 79 (254)
T TIGR02623 1 KAVILAGGLGTRISEETHLRPKPMVEIGGK-PILWHIMKIYSHHGINDFIICCGYKGYVIKEYFANYFLHMSDVTFHMAD 79 (254)
T ss_pred CEEEEcCccccccCccccCCCcceeEECCE-EHHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEecc
Confidence 589999999999999999999999999999 9999999999999999999999999999999986422111111110 0
Q ss_pred c------------eEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHc
Q 014953 88 G------------CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQS 155 (415)
Q Consensus 88 ~------------~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~ 155 (415)
. .+.+.. + ..++||+++++.+++++. .++|++++||++++.|+.+++++|.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~--~-------~~~~gt~~al~~~~~~i~------~e~flv~~gD~i~~~dl~~~~~~h~~~ 144 (254)
T TIGR02623 80 NTMEVHHKRVEPWRVTLVD--T-------GESTQTGGRLKRVREYLD------DEAFCFTYGDGVADIDIKALIAFHRKH 144 (254)
T ss_pred cccccccccCCccceeeee--c-------CCcCCcHHHHHHHHHhcC------CCeEEEEeCCeEecCCHHHHHHHHHHc
Confidence 0 011111 1 123799999999999885 378999999999999999999999999
Q ss_pred CCcEEEEEEEcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHH
Q 014953 156 GADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLN 235 (415)
Q Consensus 156 ~~~~ti~~~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~ 235 (415)
++++|++..+ + +..||++.+|+ ++|+.|.|||... ++++++|+|+|++++|.
T Consensus 145 ~~d~tl~~~~--~--~~~yG~v~~d~-~~V~~~~Ekp~~~----------------------~~~i~~Giyi~~~~il~- 196 (254)
T TIGR02623 145 GKKATVTAVQ--P--PGRFGALDLEG-EQVTSFQEKPLGD----------------------GGWINGGFFVLNPSVLD- 196 (254)
T ss_pred CCCEEEEEec--C--CCcccEEEECC-CeEEEEEeCCCCC----------------------CCeEEEEEEEEcHHHHh-
Confidence 9999887653 2 57799999985 6999999998542 25789999999999984
Q ss_pred HHhhhCCCCCcccccchhhhcccceEEEEEeCceEEecCCHHHHHHHHHhhcCCC
Q 014953 236 LLRWRFPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHP 290 (415)
Q Consensus 236 ~l~~~~~~~~~~~~~~l~~l~~~~~i~~~~~~g~~~di~t~~~y~~an~~~l~~~ 290 (415)
.++.. ..++..++++.+++++++++|.++|||.||+|+++|.+|+..+.+..
T Consensus 197 ~l~~~---~~~~~~d~i~~l~~~~~v~~~~~~g~w~dIgt~~~~~~~~~~~~~~~ 248 (254)
T TIGR02623 197 LIDGD---ATVWEQEPLETLAQRGELSAYEHSGFWQPMDTLRDKNYLEELWESGR 248 (254)
T ss_pred hcccc---CchhhhhHHHHHHhCCCEEEEeCCCEEecCCchHHHHHHHHHHHcCC
Confidence 55432 23567799999999999999999999999999999999999887653
|
Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene. |
| >cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=277.82 Aligned_cols=231 Identities=26% Similarity=0.392 Sum_probs=186.2
Q ss_pred eEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccC-hhHHHHHHHhhccCCCCcccCC
Q 014953 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYN-SASLNRHLARAYNYGSGVTFGD 87 (415)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~-~~~i~~~l~~~~~~~~~~~~~~ 87 (415)
|+|||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++|++++++. .+++.+|+.. +..|+.
T Consensus 1 m~~iIlAaG~gtRl~plt~~~pK~llpv~~~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~l~~------~~~~~~ 73 (240)
T cd02538 1 MKGIILAGGSGTRLYPLTKVVSKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPEDLPLFKELLGD------GSDLGI 73 (240)
T ss_pred CeEEEEcCcCcccCCccccCCCceeeEECCE-EhHHHHHHHHHHCCCCEEEEEeCcchHHHHHHHHhc------ccccCc
Confidence 7899999999999999999999999999999 9999999999999999999998765 4678888753 223432
Q ss_pred ceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccChHHHHHHHHHcCCcEEEEEEEc
Q 014953 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMDYMDFVQNHRQSGADITISCLPM 166 (415)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~l~~~l~~h~~~~~~~ti~~~~~ 166 (415)
.+....+. ...|++++++.++++++ .++|+|++||. +.+.++.+++++|.++++++|+++.+.
T Consensus 74 ---~i~~~~~~-------~~~G~~~al~~a~~~~~------~~~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (240)
T cd02538 74 ---RITYAVQP-------KPGGLAQAFIIGEEFIG------DDPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEV 137 (240)
T ss_pred ---eEEEeeCC-------CCCCHHHHHHHHHHhcC------CCCEEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 22222221 13699999999999885 37899999997 456679999999998888899988887
Q ss_pred CCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC--C
Q 014953 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT--A 244 (415)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~--~ 244 (415)
++ ++.||++.+|++|+|..+.|||..+. ++++++|+|+|++++|+ .++...+. .
T Consensus 138 ~~--~~~~g~v~~d~~g~v~~~~ekp~~~~---------------------~~~~~~Giyi~~~~~l~-~l~~~~~~~~~ 193 (240)
T cd02538 138 ND--PERYGVVEFDENGRVLSIEEKPKKPK---------------------SNYAVTGLYFYDNDVFE-IAKQLKPSARG 193 (240)
T ss_pred Cc--hhcCceEEecCCCcEEEEEECCCCCC---------------------CCeEEEEEEEECHHHHH-HHHhcCCCCCC
Confidence 65 57899999998899999999986542 35789999999999885 55543221 1
Q ss_pred CcccccchhhhcccceEEEEEeC--ceEEecCCHHHHHHHHHhh
Q 014953 245 NDFGSEIIPASANEQFLKAYLFN--DYWEDIGTIRSFFEANLAL 286 (415)
Q Consensus 245 ~~~~~~~l~~l~~~~~i~~~~~~--g~~~di~t~~~y~~an~~~ 286 (415)
.....++++.+++++++.++.++ |+|.|||||++|++||+.+
T Consensus 194 ~~~l~d~~~~l~~~g~~~~~~~~~~g~w~digt~~~~~~a~~~~ 237 (240)
T cd02538 194 ELEITDVNNEYLEKGKLSVELLGRGFAWLDTGTHESLLEASNFV 237 (240)
T ss_pred eEEhHHHHHHHHHhCCeEEEEeCCCcEEEeCCCHHHHHHHHHHH
Confidence 22335888999888888888776 9999999999999999865
|
This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. |
| >TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=279.55 Aligned_cols=231 Identities=25% Similarity=0.425 Sum_probs=185.5
Q ss_pred EEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcc-cChhHHHHHHHhhccCCCCcccCCc
Q 014953 10 AAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQ-YNSASLNRHLARAYNYGSGVTFGDG 88 (415)
Q Consensus 10 ~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~-~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (415)
+|||||||.||||+|+|..+||+|+||+|| |||+|+|++|..+|+++|+|+++ +..+.+.+++. ++..|+..
T Consensus 1 kaIILAgG~GtRL~plT~~~pK~Llpv~gk-PmI~~~L~~l~~aGi~~I~iv~~~~~~~~~~~~lg------~g~~~g~~ 73 (286)
T TIGR01207 1 KGIILAGGSGTRLYPITRAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLG------DGSQWGVN 73 (286)
T ss_pred CEEEECCCCCccCCcccCCCCceeeEECCE-EhHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHhc------cccccCce
Confidence 689999999999999999999999999999 99999999999999999998875 45567777664 33345432
Q ss_pred eEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccChHHHHHHHHHcCCcEEEEEEEcC
Q 014953 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMDYMDFVQNHRQSGADITISCLPMD 167 (415)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~l~~~l~~h~~~~~~~ti~~~~~~ 167 (415)
+....|. .+.||++|++.+.+++. .++|+++.||. +++.++.++++.|.+.++++|+++.+++
T Consensus 74 ---i~~~~q~-------~~~Gta~al~~a~~~l~------~~~~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v~ 137 (286)
T TIGR01207 74 ---LSYAVQP-------SPDGLAQAFIIGEDFIG------GDPSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVS 137 (286)
T ss_pred ---EEEEEcc-------CCCCHHHHHHHHHHHhC------CCCEEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEcc
Confidence 2222232 13799999999999985 36788999997 5678899999999888888999988887
Q ss_pred CCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC-C-C
Q 014953 168 DSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT-A-N 245 (415)
Q Consensus 168 ~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~-~-~ 245 (415)
+ +++||++..|++|+|..+.|||..+. ++++++|+|+|++++++ .++...+. . .
T Consensus 138 ~--p~~yGvv~~d~~g~V~~i~EKp~~~~---------------------s~~~~~GiYi~~~~i~~-~l~~~~~~~~ge 193 (286)
T TIGR01207 138 D--PERYGVVEFDSNGRAISIEEKPAQPK---------------------SNYAVTGLYFYDNRVVE-IARQLKPSARGE 193 (286)
T ss_pred C--HHHCceEEECCCCeEEEEEECCCCCC---------------------CCEEEEEEEEEchHHHH-HHhhcCCCCCCc
Confidence 6 67899999998899999999997542 46899999999999875 44443221 1 2
Q ss_pred cccccchhhhcccceEEEEEe-Cce-EEecCCHHHHHHHHHhhc
Q 014953 246 DFGSEIIPASANEQFLKAYLF-NDY-WEDIGTIRSFFEANLALT 287 (415)
Q Consensus 246 ~~~~~~l~~l~~~~~i~~~~~-~g~-~~di~t~~~y~~an~~~l 287 (415)
....++++.+++++++.++.+ .|+ |.|+||+++|++|+..+.
T Consensus 194 ~eitdv~~~~l~~g~l~v~~~~~g~~W~DiGt~~~l~~A~~~~~ 237 (286)
T TIGR01207 194 LEITDLNRVYLEEGRLSVELLGRGYAWLDTGTHDSLLEASNFIQ 237 (286)
T ss_pred EeHHHHHHHHHHcCCcEEEEecCCCEEEeCCCHHHHHHHHHHHH
Confidence 233588888888877766665 676 999999999999998664
|
This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. |
| >PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-36 Score=279.37 Aligned_cols=248 Identities=21% Similarity=0.328 Sum_probs=193.2
Q ss_pred cccccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCC
Q 014953 3 KRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSG 82 (415)
Q Consensus 3 ~~~~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~ 82 (415)
.-+.+-|+|||||||.|+||+|+|..+||+|+||+|+ |||+|++++|.++|+++|+|++++..+++.+|+...+.++..
T Consensus 3 ~~~~~~~~aiIlaaG~g~Rl~~~t~~~pK~l~pv~g~-pii~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~~~~~ 81 (302)
T PRK13389 3 AINTKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDK-PLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAM 81 (302)
T ss_pred cccccceEEEEECCcCCccCCCccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHccchhhhhh
Confidence 3345569999999999999999999999999999999 999999999999999999999999999999999643211100
Q ss_pred ------cccCCc-------eEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecc-------
Q 014953 83 ------VTFGDG-------CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYR------- 142 (415)
Q Consensus 83 ------~~~~~~-------~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~------- 142 (415)
..+..+ ...+....| ..+.||++|++.+.+++. .++|+|++||++++
T Consensus 82 l~~~~~~~~~~e~~~i~~~~~~i~~~~q-------~~~~Gtg~Av~~a~~~~~------~~~~lVl~gD~~~~~~~~~~~ 148 (302)
T PRK13389 82 LEKRVKRQLLDEVQSICPPHVTIMQVRQ-------GLAKGLGHAVLCAHPVVG------DEPVAVILPDVILDEYESDLS 148 (302)
T ss_pred hhhhhhhHHHHhhhhccccCceEEEeec-------CCCCChHHHHHHHHHHcC------CCCEEEEeCcceecccccccc
Confidence 000000 011111112 124799999999998874 37899999999874
Q ss_pred -cChHHHHHHHHHcCCcEEEEEEEcCCCcCCcccEEEECC-------CCCeEEEEEcCCccccccccccccccccccccc
Q 014953 143 -MDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINN-------EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEA 214 (415)
Q Consensus 143 -~~l~~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d~-------~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~ 214 (415)
.++.+++++|.+.+++ |+++.+.++ +..||++..|+ +++|..+.|||.....
T Consensus 149 ~~dl~~l~~~h~~~~~~-tl~~~~~~~--~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~~~----------------- 208 (302)
T PRK13389 149 QDNLAEMIRRFDETGHS-QIMVEPVAD--VTAYGVVDCKGVELAPGESVPMVGVVEKPKADVA----------------- 208 (302)
T ss_pred cccHHHHHHHHHhcCCC-EEEEEEccc--CCcceEEEecCcccccCCcceEEEEEECCCCCCC-----------------
Confidence 6899999999888876 677777654 67899998863 3579999999974321
Q ss_pred ccccceeeeeEEEEeHHHHHHHHhhhCC--CCCcccccchhhhcccceEEEEEeCceEEecCCHHHHHHHHHhhc
Q 014953 215 EEKPYIASMGVYLFKKEILLNLLRWRFP--TANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALT 287 (415)
Q Consensus 215 ~~~~~l~~~Giyi~~~~~l~~~l~~~~~--~~~~~~~~~l~~l~~~~~i~~~~~~g~~~di~t~~~y~~an~~~l 287 (415)
.++++++|+|+|++++|. .++...+ ....+..|+++.+++++++++|.++|+|+|||+|++|.+|+.++.
T Consensus 209 --~s~~~~~GiYi~~~~il~-~l~~~~~~~~~e~~l~d~i~~l~~~~~v~~~~~~G~w~DIGtpe~~~~a~~~~~ 280 (302)
T PRK13389 209 --PSNLAIVGRYVLSADIWP-LLAKTPPGAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYG 280 (302)
T ss_pred --CccEEEEEEEEECHHHHH-HHHhCCCCCCCeeeHHHHHHHHHHcCCEEEEEeeeEEEeCCCHHHHHHHHHHHH
Confidence 136899999999999984 5554322 123456789999999899999999999999999999999999874
|
|
| >cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-36 Score=276.86 Aligned_cols=243 Identities=23% Similarity=0.300 Sum_probs=187.1
Q ss_pred eEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCC-----CCc
Q 014953 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYG-----SGV 83 (415)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~-----~~~ 83 (415)
|+|||||||.|+||+|+|..+||+|+||+|+ |||+|+++++.++|+++|+|+++++.+++.+|+...+.+. .+.
T Consensus 1 mkaiIlAaG~gtRl~plt~~~pK~llpv~gk-pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (267)
T cd02541 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PVIQYIVEEAVAAGIEDIIIVTGRGKRAIEDHFDRSYELEETLEKKGK 79 (267)
T ss_pred CeEEEEcCCCCccCCCcccCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHhCCcHHHHHHHHhccc
Confidence 7899999999999999999999999999999 9999999999999999999999999999999986432110 000
Q ss_pred cc--------C-CceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeeccc---ChHHHHHH
Q 014953 84 TF--------G-DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRM---DYMDFVQN 151 (415)
Q Consensus 84 ~~--------~-~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~---~l~~~l~~ 151 (415)
.+ . ...+.+. .+. +++||+++++.++.+++ .++|+|++||.++.. ++.++++.
T Consensus 80 ~~~~~~~~~~~~~~~i~~~--~~~-------~~~Gt~~al~~~~~~i~------~~~~lv~~gD~~~~~~~~~~~~l~~~ 144 (267)
T cd02541 80 TDLLEEVRIISDLANIHYV--RQK-------EPLGLGHAVLCAKPFIG------DEPFAVLLGDDLIDSKEPCLKQLIEA 144 (267)
T ss_pred HHHhhhhhcccCCceEEEE--EcC-------CCCChHHHHHHHHHHhC------CCceEEEECCeEEeCCchHHHHHHHH
Confidence 00 0 0012222 121 23799999999999885 378999999997754 49999999
Q ss_pred HHHcCCcEEEEEEEcCCCcCCcccEEEECC----CCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEE
Q 014953 152 HRQSGADITISCLPMDDSRASDFGLMKINN----EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYL 227 (415)
Q Consensus 152 h~~~~~~~ti~~~~~~~~~~~~~g~v~~d~----~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi 227 (415)
|++.+++ ++++...+.+.+..||++.+|+ +++|.++.|||..... .++++++|+|+
T Consensus 145 ~~~~~~~-~~~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~-------------------~~~~~~~Giyi 204 (267)
T cd02541 145 YEKTGAS-VIAVEEVPPEDVSKYGIVKGEKIDGDVFKVKGLVEKPKPEEA-------------------PSNLAIVGRYV 204 (267)
T ss_pred HHHhCCC-EEEEEEcChhcCccceEEEeecCCCCceEEeEEEECCCCCCC-------------------CCceEEEEEEE
Confidence 9887765 4555555544467899999985 2489999999864221 13678999999
Q ss_pred EeHHHHHHHHhhhCC-CCCcccccchhhhcccceEEEEEeCceEEecCCHHHHHHHHHhhc
Q 014953 228 FKKEILLNLLRWRFP-TANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALT 287 (415)
Q Consensus 228 ~~~~~l~~~l~~~~~-~~~~~~~~~l~~l~~~~~i~~~~~~g~~~di~t~~~y~~an~~~l 287 (415)
|++++|..+.+.... ....+..++++.+++++++++|.++|+|.||+|+++|++||+++.
T Consensus 205 ~~~~~~~~l~~~~~~~~~e~~~~d~i~~l~~~~~v~~~~~~g~w~digt~~~y~~a~~~~~ 265 (267)
T cd02541 205 LTPDIFDILENTKPGKGGEIQLTDAIAKLLEEEPVYAYVFEGKRYDCGNKLGYLKATVEFA 265 (267)
T ss_pred cCHHHHHHHHhCCCCCCCcEEHHHHHHHHHhcCCEEEEEeeeEEEeCCCHHHHHHHHHHHh
Confidence 999988655331111 122345688999998889999999999999999999999999874
|
Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. |
| >cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=272.12 Aligned_cols=243 Identities=22% Similarity=0.334 Sum_probs=190.7
Q ss_pred EEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccC--Cc
Q 014953 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG--DG 88 (415)
Q Consensus 11 aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~--~~ 88 (415)
|||||||.|+||+|+|..+||||+||+|+ |||+|+++.+.++|+++|+|+++|..+++.+|+.+....+....+. ..
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv~~~-p~i~~~~~~~~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 79 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEIGGR-PILWHIMKIYSHYGHNDFILCLGYKGHVIKEYFLNYFLHNSDVTIDLGTN 79 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEECCE-EHHHHHHHHHHhCCCceEEEECCCCHHHHHHHHHhhhhhcCceeEeeccc
Confidence 69999999999999999999999999999 9999999999999999999999999999999987643211111111 00
Q ss_pred eEEEecCccCC---CCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEEE
Q 014953 89 CVEVLAATQTP---GEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLP 165 (415)
Q Consensus 89 ~v~i~~~~~~~---~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~~ 165 (415)
.+.+....... ....+....||+++++.+++++.+ .++|++++||++++.++.++++.|...++++|+++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~~~~~-----~~~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~~ 154 (253)
T cd02524 80 RIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLGD-----DETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAVH 154 (253)
T ss_pred ceeeecccccccceeecccCcccccHHHHHHHHHhcCC-----CCeEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEec
Confidence 12222210000 000001125899999999998852 2789999999999999999999999999999987763
Q ss_pred cCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCC
Q 014953 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAN 245 (415)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~~~ 245 (415)
....|+++.+|++|+|..+.|||.... .++++|+|+++++++..+ +.. ..
T Consensus 155 ----~~~~~g~v~~d~~g~V~~~~ekp~~~~----------------------~~i~~Giyi~~~~l~~~l-~~~---~~ 204 (253)
T cd02524 155 ----PPGRFGELDLDDDGQVTSFTEKPQGDG----------------------GWINGGFFVLEPEVFDYI-DGD---DT 204 (253)
T ss_pred ----CCCcccEEEECCCCCEEEEEECCCCCC----------------------ceEEEEEEEECHHHHHhh-ccc---cc
Confidence 146789999998899999999986531 468899999999998543 332 33
Q ss_pred cccccchhhhcccceEEEEEeCceEEecCCHHHHHHHHHhhcCC
Q 014953 246 DFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAH 289 (415)
Q Consensus 246 ~~~~~~l~~l~~~~~i~~~~~~g~~~di~t~~~y~~an~~~l~~ 289 (415)
++..++++.+++++++++|.++|+|.+|+|+++|.+|+..+.+.
T Consensus 205 ~~~~d~l~~li~~~~v~~~~~~g~w~~I~t~~~~~~~~~~~~~~ 248 (253)
T cd02524 205 VFEREPLERLAKDGELMAYKHTGFWQCMDTLRDKQTLEELWNSG 248 (253)
T ss_pred hhhHHHHHHHHhcCCEEEEecCCEEEeCcCHHHHHHHHHHHHcC
Confidence 55678999999999999999999999999999999999877543
|
Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity. |
| >TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=273.36 Aligned_cols=240 Identities=20% Similarity=0.268 Sum_probs=183.7
Q ss_pred eEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCC-----CCc
Q 014953 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYG-----SGV 83 (415)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~-----~~~ 83 (415)
|+|||||||.|+||+|+|..+||+|+||+|+ |||+|++++|.++|+++|+|++++..+++.+|+...+.+. .+.
T Consensus 1 m~avIlAaG~gtRl~plt~~~pK~llpi~g~-pli~~~l~~l~~~gi~~v~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (260)
T TIGR01099 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PLIQYVVEEAVEAGIEDILIVTGRGKRAIEDHFDTSYELEHQLEKRGK 79 (260)
T ss_pred CeEEEEcccCcccCCCcccCCCceeEEECCE-EHHHHHHHHHHhCCCCEEEEEeCCcHHHHHHHhcccHHHHHHHHhhhh
Confidence 7899999999999999999999999999999 9999999999999999999999999999999986432110 000
Q ss_pred ccC-------CceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeeccc---ChHHHHHHHH
Q 014953 84 TFG-------DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRM---DYMDFVQNHR 153 (415)
Q Consensus 84 ~~~-------~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~---~l~~~l~~h~ 153 (415)
.+. .....+....+. +..||+++++.+++++. .++|+|++||.++.. ++.++++.|.
T Consensus 80 ~~~~~~~~~~~~~~~i~~~~~~-------~~~G~~~al~~~~~~~~------~~~~lv~~gD~~~~~~~~~~~~l~~~~~ 146 (260)
T TIGR01099 80 EELLKEVRSISPLATIFYVRQK-------EQKGLGHAVLCAEPFVG------DEPFAVILGDDIVVSEEPALKQMIDLYE 146 (260)
T ss_pred HHHHHHhhhccccceEEEEecC-------CCCCHHHHHHHHHHhhC------CCCEEEEeccceecCCcHHHHHHHHHHH
Confidence 000 000111111121 23699999999999884 478999999997654 6999999999
Q ss_pred HcCCcEEEEEEEcCCCcCCcccEEEECC----CCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEe
Q 014953 154 QSGADITISCLPMDDSRASDFGLMKINN----EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFK 229 (415)
Q Consensus 154 ~~~~~~ti~~~~~~~~~~~~~g~v~~d~----~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~ 229 (415)
++++++ +++...+.+.+.+||++.+|. +++|+.+.|||..... .++++++|+|+|+
T Consensus 147 ~~~~~i-i~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~-------------------~~~~~~~Giyi~~ 206 (260)
T TIGR01099 147 KYGCSI-IAVEEVPKEEVSKYGVIDGEGVEEGLYEIKDMVEKPKPEEA-------------------PSNLAIVGRYVLT 206 (260)
T ss_pred HhCCCE-EEEEECChhhcccCceEEeccccCCceeEEEEEECCCCCCC-------------------CCceEEEEEEECC
Confidence 888875 555555544468899998862 3699999999853211 1367899999999
Q ss_pred HHHHHHHHhhhCCC-CCcccccchhhhcccceEEEEEeCceEEecCCHHHHHHH
Q 014953 230 KEILLNLLRWRFPT-ANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEA 282 (415)
Q Consensus 230 ~~~l~~~l~~~~~~-~~~~~~~~l~~l~~~~~i~~~~~~g~~~di~t~~~y~~a 282 (415)
+++|..+.+..... ......++++.+++++++++|.++|||.||||+++|++|
T Consensus 207 ~~~~~~l~~~~~~~~~~~~l~d~i~~l~~~~~v~~~~~~g~w~digs~~~y~~a 260 (260)
T TIGR01099 207 PDIFDLLEETPPGAGGEIQLTDALRKLLEKETVYAYKFKGKRYDCGSKLGYLKA 260 (260)
T ss_pred HHHHHHHHhCCCCCCCceeHHHHHHHHHhcCCEEEEEcceEEEeCCCHHHHhhC
Confidence 99887654322111 123345788999988999999999999999999999875
|
Built to distinquish between the highly similar genes galU and galF |
| >cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=265.92 Aligned_cols=219 Identities=21% Similarity=0.343 Sum_probs=180.4
Q ss_pred EEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCce
Q 014953 10 AAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGC 89 (415)
Q Consensus 10 ~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 89 (415)
+|||||||.|+||+|+|..+||+|+|++|+ |||+|++++|.++|+++|+|+++++.+++.+|+... .|+
T Consensus 1 kaiIlaaG~g~Rl~plt~~~pK~llpi~g~-~li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~-------~~~--- 69 (221)
T cd06422 1 KAMILAAGLGTRMRPLTDTRPKPLVPVAGK-PLIDHALDRLAAAGIRRIVVNTHHLADQIEAHLGDS-------RFG--- 69 (221)
T ss_pred CEEEEcCCCCCccccccCCCCCceeeECCE-EHHHHHHHHHHHCCCCEEEEEccCCHHHHHHHHhcc-------cCC---
Confidence 589999999999999999999999999999 999999999999999999999999999999998641 122
Q ss_pred EEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHH--HcCCcEEEEEEEcC
Q 014953 90 VEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHR--QSGADITISCLPMD 167 (415)
Q Consensus 90 v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~--~~~~~~ti~~~~~~ 167 (415)
+.+....+.. ...|++++++.++.++. .++|++++||++++.++.+++++|. ..++.+++...+.+
T Consensus 70 ~~i~~~~~~~------~~~g~~~~l~~~~~~~~------~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (221)
T cd06422 70 LRITISDEPD------ELLETGGGIKKALPLLG------DEPFLVVNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRNP 137 (221)
T ss_pred ceEEEecCCC------cccccHHHHHHHHHhcC------CCCEEEEeCCeeeCCCHHHHHHHHHhccCCCceEEEEEEcC
Confidence 2222222210 13699999999999885 3789999999999999999999998 45666777666654
Q ss_pred CCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCCcc
Q 014953 168 DSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDF 247 (415)
Q Consensus 168 ~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~~~~~ 247 (415)
. ...||.+.+|++++|..+.++|.. +++++|+|+|++++|..+.+. ...
T Consensus 138 ~--~~~~g~v~~d~~~~v~~~~~~~~~------------------------~~~~~Giyi~~~~~l~~l~~~-----~~~ 186 (221)
T cd06422 138 G--HNGVGDFSLDADGRLRRGGGGAVA------------------------PFTFTGIQILSPELFAGIPPG-----KFS 186 (221)
T ss_pred C--CCCcceEEECCCCcEeecccCCCC------------------------ceEEEEEEEEcHHHHhhCCcC-----ccc
Confidence 3 578899999888999999887642 468999999999998754322 223
Q ss_pred cccchhhhcccceEEEEEeCceEEecCCHHHHHHH
Q 014953 248 GSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEA 282 (415)
Q Consensus 248 ~~~~l~~l~~~~~i~~~~~~g~~~di~t~~~y~~a 282 (415)
..++++.+++++++.+|.++|+|.||+|+++|.+|
T Consensus 187 ~~d~~~~l~~~~~~~~~~~~g~w~di~t~~~~~~a 221 (221)
T cd06422 187 LNPLWDRAIAAGRLFGLVYDGLWFDVGTPERLLAA 221 (221)
T ss_pred HHHHHHHHHHcCCeEEEecCCEEEcCCCHHHHhhC
Confidence 46889999988999999999999999999999875
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. |
| >cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=263.73 Aligned_cols=232 Identities=26% Similarity=0.406 Sum_probs=189.1
Q ss_pred eEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCc
Q 014953 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (415)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (415)
|+|||||||.|+||+|+|..+||+|+|++|+ |||+|++++|.++|+++|+|++++..+.+.+++.... .|+..
T Consensus 1 m~avIlAaG~g~Rl~plt~~~pK~l~~i~g~-~li~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~~~------~~~~~ 73 (236)
T cd04189 1 MKGLILAGGKGTRLRPLTYTRPKQLIPVAGK-PIIQYAIEDLREAGIEDIGIVVGPTGEEIKEALGDGS------RFGVR 73 (236)
T ss_pred CeEEEECCCccccccccccCCCceeeEECCc-chHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHhcchh------hcCCe
Confidence 7899999999999999999999999999999 9999999999999999999999998899998886432 22211
Q ss_pred eEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEEEcCC
Q 014953 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDD 168 (415)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~~~~~ 168 (415)
+.++. +. .+.|++++++.++.++. .++|++++||.+++.++.++++.|.++++++++++.+.++
T Consensus 74 -i~~~~--~~-------~~~g~~~sl~~a~~~i~------~~~~li~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (236)
T cd04189 74 -ITYIL--QE-------EPLGLAHAVLAARDFLG------DEPFVVYLGDNLIQEGISPLVRDFLEEDADASILLAEVED 137 (236)
T ss_pred -EEEEE--CC-------CCCChHHHHHHHHHhcC------CCCEEEEECCeecCcCHHHHHHHHHhcCCceEEEEEECCC
Confidence 22322 11 13699999999998885 3789999999999999999999999998999988887765
Q ss_pred CcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC--CCc
Q 014953 169 SRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT--AND 246 (415)
Q Consensus 169 ~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~--~~~ 246 (415)
+..|+++.+|+ ++|..+.|||..+. +.+.++|+|+|+++++..+ +...+. ...
T Consensus 138 --~~~~g~~~~d~-~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~~l-~~~~~~~~~~~ 192 (236)
T cd04189 138 --PRRFGVAVVDD-GRIVRLVEKPKEPP---------------------SNLALVGVYAFTPAIFDAI-SRLKPSWRGEL 192 (236)
T ss_pred --cccceEEEEcC-CeEEEEEECCCCCC---------------------CCEEEEEEEEeCHHHHHHH-HhcCCCCCCeE
Confidence 56789888874 59999999986432 2578999999999998644 332111 122
Q ss_pred ccccchhhhccc-ceEEEEEeCceEEecCCHHHHHHHHHhhcC
Q 014953 247 FGSEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEANLALTA 288 (415)
Q Consensus 247 ~~~~~l~~l~~~-~~i~~~~~~g~~~di~t~~~y~~an~~~l~ 288 (415)
...++++.+++. .++.+|+++++|.||+|++||.+||+.+++
T Consensus 193 ~~~d~~~~~i~~g~~v~~~~~~~~~~~i~t~~dl~~a~~~~l~ 235 (236)
T cd04189 193 EITDAIQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEANRLLLD 235 (236)
T ss_pred EHHHHHHHHHHcCCcEEEEEcCceEEeCCCHHHHHHHHHHHHh
Confidence 345788888865 579999999999999999999999999886
|
This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in |
| >cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=255.52 Aligned_cols=223 Identities=28% Similarity=0.485 Sum_probs=183.9
Q ss_pred EEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCceE
Q 014953 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (415)
Q Consensus 11 aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 90 (415)
|||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|+++++.+.+.+++...+ .++.. +
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~v~vv~~~~~~~i~~~~~~~~------~~~~~-~ 72 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPVAGR-PFLEYLLEYLARQGISRIVLSVGYLAEQIEEYFGDGY------RGGIR-I 72 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEECCc-chHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHcCcc------ccCce-E
Confidence 69999999999999999999999999999 9999999999999999999999999888888886422 12211 2
Q ss_pred EEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEEEcCCCc
Q 014953 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSR 170 (415)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~~~~~~~ 170 (415)
.+... +. ..|++++++.++.++. .++|++++||++++.++.++++.|++.++++++++.+.++
T Consensus 73 ~~~~~-~~--------~~G~~~~l~~a~~~~~------~~~~lv~~~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-- 135 (223)
T cd06915 73 YYVIE-PE--------PLGTGGAIKNALPKLP------EDQFLVLNGDTYFDVDLLALLAALRASGADATMALRRVPD-- 135 (223)
T ss_pred EEEEC-CC--------CCcchHHHHHHHhhcC------CCCEEEEECCcccCCCHHHHHHHHHhCCCcEEEEEEECCC--
Confidence 22211 11 2699999999998874 4789999999999999999999998888888888887654
Q ss_pred CCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCCccccc
Q 014953 171 ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSE 250 (415)
Q Consensus 171 ~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~ 250 (415)
...|+.+.+|++|+|..+.+||.... +++.++|+|+|++++|..+.+. ..++..+
T Consensus 136 ~~~~~~v~~d~~~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~l~~~~~~----~~~~~~~ 190 (223)
T cd06915 136 ASRYGNVTVDGDGRVIAFVEKGPGAA---------------------PGLINGGVYLLRKEILAEIPAD----AFSLEAD 190 (223)
T ss_pred CCcceeEEECCCCeEEEEEeCCCCCC---------------------CCcEEEEEEEECHHHHhhCCcc----CCChHHH
Confidence 46789888988899999999876431 3678999999999998644221 2345668
Q ss_pred chhhhcccceEEEEEeCceEEecCCHHHHHHHH
Q 014953 251 IIPASANEQFLKAYLFNDYWEDIGTIRSFFEAN 283 (415)
Q Consensus 251 ~l~~l~~~~~i~~~~~~g~~~di~t~~~y~~an 283 (415)
+++.++.++++.+|+++++|.||+|++||..|+
T Consensus 191 ~~~~l~~~~~v~~~~~~~~~~dI~t~~dl~~a~ 223 (223)
T cd06915 191 VLPALVKRGRLYGFEVDGYFIDIGIPEDYARAQ 223 (223)
T ss_pred HHHHHHhcCcEEEEecCCeEEecCCHHHHHhhC
Confidence 899989878999999999999999999999883
|
WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars. |
| >cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-33 Score=250.17 Aligned_cols=217 Identities=33% Similarity=0.587 Sum_probs=181.0
Q ss_pred EEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCceE
Q 014953 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (415)
Q Consensus 11 aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 90 (415)
|||||||.|+||+|+|..+||+|+|++|+ |||+|++++|.++|+++|+|++++..+++.+|+...+ .|+.. +
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v~g~-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~------~~~~~-i 72 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPIAGK-PILEYIIERLARAGIDEIILVVGYLGEQIEEYFGDGS------KFGVN-I 72 (217)
T ss_pred CEEecCCccccccccccCCCccccEECCe-eHHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHcChh------hcCce-E
Confidence 69999999999999999999999999999 9999999999999999999999998888988886432 12211 2
Q ss_pred EEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEEEcCCCc
Q 014953 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSR 170 (415)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~~~~~~~ 170 (415)
.++. +. ...|++++++.++.++. .++|++++||++++.++.++++.|.++++++++++.+.+.
T Consensus 73 ~~~~--~~-------~~~g~~~al~~~~~~~~------~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 135 (217)
T cd04181 73 EYVV--QE-------EPLGTAGAVRNAEDFLG------DDDFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVED-- 135 (217)
T ss_pred EEEe--CC-------CCCccHHHHHHhhhhcC------CCCEEEEECCeecCcCHHHHHHHHHhcCCCEEEEEEEcCC--
Confidence 2222 11 12699999999998873 5899999999999999999999999999999999887763
Q ss_pred CCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCCccccc
Q 014953 171 ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSE 250 (415)
Q Consensus 171 ~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~ 250 (415)
+.+|+.+.+|++++|..+.|||.... ..++++|+|+|++++++ .++.......++..+
T Consensus 136 ~~~~~~v~~d~~~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~-~l~~~~~~~~~~~~~ 193 (217)
T cd04181 136 PSRYGVVELDDDGRVTRFVEKPTLPE---------------------SNLANAGIYIFEPEILD-YIPEILPRGEDELTD 193 (217)
T ss_pred CCcceEEEEcCCCcEEEEEECCCCCC---------------------CCEEEEEEEEECHHHHH-hhhhcCCcccccHHH
Confidence 67899999998899999999987542 25789999999999885 555432233566778
Q ss_pred chhhhcccceEEEEEeCceEEecC
Q 014953 251 IIPASANEQFLKAYLFNDYWEDIG 274 (415)
Q Consensus 251 ~l~~l~~~~~i~~~~~~g~~~di~ 274 (415)
+++.++++.++++|+++|+|.|||
T Consensus 194 ~~~~l~~~~~v~~~~~~g~w~dig 217 (217)
T cd04181 194 AIPLLIEEGKVYGYPVDGYWLDIG 217 (217)
T ss_pred HHHHHHhcCCEEEEEcCCEEecCC
Confidence 999999889999999999999986
|
Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. |
| >cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=246.74 Aligned_cols=219 Identities=25% Similarity=0.472 Sum_probs=176.4
Q ss_pred EEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCceE
Q 014953 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (415)
Q Consensus 11 aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 90 (415)
|||||||.|+||+|+|..+||+|+|++|+ |||+|++++|.++|+++|+|++++..+++.+|+.+.. .|+.. +
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~~g~-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~~------~~~~~-i 72 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKVGGK-PILETIIDRFIAQGFRNFYISVNYLAEMIEDYFGDGS------KFGVN-I 72 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeECCc-chHHHHHHHHHHCCCcEEEEECccCHHHHHHHHCCcc------ccCcc-E
Confidence 69999999999999999999999999999 9999999999999999999999999888888875421 23211 2
Q ss_pred EEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEEEcCCCc
Q 014953 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSR 170 (415)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~~~~~~~ 170 (415)
.++. +. .+.|+++++..+.+.. .++|+|++||.+++.++.++++.|+..++++++++.+...
T Consensus 73 ~~~~--~~-------~~~g~~~~l~~~~~~~-------~~~~lv~~~D~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~-- 134 (220)
T cd06426 73 SYVR--ED-------KPLGTAGALSLLPEKP-------TDPFLVMNGDILTNLNYEHLLDFHKENNADATVCVREYEV-- 134 (220)
T ss_pred EEEE--CC-------CCCcchHHHHHHHhhC-------CCCEEEEcCCEeeccCHHHHHHHHHhcCCCEEEEEEEcCC--
Confidence 2221 11 1369999998776544 4789999999999999999999999988888888877543
Q ss_pred CCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCCccccc
Q 014953 171 ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSE 250 (415)
Q Consensus 171 ~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~ 250 (415)
...|+++..|+ ++|..+.|||... .++++|+|+|+++++..+ ++ .......+
T Consensus 135 ~~~~g~~~~d~-~~v~~~~ek~~~~-----------------------~~~~~Giy~~~~~~~~~i-~~---~~~~~l~~ 186 (220)
T cd06426 135 QVPYGVVETEG-GRITSIEEKPTHS-----------------------FLVNAGIYVLEPEVLDLI-PK---NEFFDMPD 186 (220)
T ss_pred CCcceEEEECC-CEEEEEEECCCCC-----------------------CeEEEEEEEEcHHHHhhc-CC---CCCcCHHH
Confidence 35689888875 8999999987542 468899999999998643 22 11122457
Q ss_pred chhhhccc-ceEEEEEeCceEEecCCHHHHHHHH
Q 014953 251 IIPASANE-QFLKAYLFNDYWEDIGTIRSFFEAN 283 (415)
Q Consensus 251 ~l~~l~~~-~~i~~~~~~g~~~di~t~~~y~~an 283 (415)
+++.+++. .++.+|+++|+|.||+|+++|.+||
T Consensus 187 ~~~~~i~~~~~i~~~~~~~~w~~igt~~dl~~a~ 220 (220)
T cd06426 187 LIEKLIKEGKKVGVFPIHEYWLDIGRPEDYEKAN 220 (220)
T ss_pred HHHHHHHCCCcEEEEEeCCeEEeCCCHHHHHhhC
Confidence 78888765 5699999999999999999999985
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. |
| >COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=244.14 Aligned_cols=250 Identities=22% Similarity=0.311 Sum_probs=201.8
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCC----
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGS---- 81 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~---- 81 (415)
++-+||||+|||.||||.|.|...||-||||-+| |+|+|+++.+.++||++|++|++..+..+.+|++.++.++.
T Consensus 2 ~~irKAViPaAGlGTRfLPATKaiPKEMLPIvdK-P~IqYiVeEa~~aGIe~i~iVTgr~K~~IeDhFD~s~ELE~~L~~ 80 (291)
T COG1210 2 MKIRKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PLIQYIVEEAVAAGIEEILIVTGRGKRAIEDHFDTSYELENTLEK 80 (291)
T ss_pred CcccEEEEEccCcccccccccccCchhhccccCc-hhHHHHHHHHHHcCCCEEEEEecCCcchHHHhCcCcHHHHHHHHH
Confidence 4568999999999999999999999999999999 99999999999999999999999999999999876653321
Q ss_pred -Cc-cc----C--CceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC---hHHHHH
Q 014953 82 -GV-TF----G--DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD---YMDFVQ 150 (415)
Q Consensus 82 -~~-~~----~--~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~---l~~~l~ 150 (415)
++ +. . ...+.+.+..|. .+.|.|+|+++|..++. +++|.|+.+|.++... +.+|++
T Consensus 81 ~~K~~~L~~v~~i~~~~~i~~vRQ~-------e~~GLGhAVl~A~~~vg------~EpFaVlL~Ddl~~~~~~~l~qmi~ 147 (291)
T COG1210 81 RGKRELLEEVRSIPPLVTISFVRQK-------EPLGLGHAVLCAKPFVG------DEPFAVLLPDDLVDSEKPCLKQMIE 147 (291)
T ss_pred hCHHHHHHHHHhcccCceEEEEecC-------CCCcchhHHHhhhhhcC------CCceEEEeCCeeecCCchHHHHHHH
Confidence 11 00 0 112333333343 25799999999999997 4899999999987753 788999
Q ss_pred HHHHcCCcEEEEEEEcCCCcCCcccEEE----ECCC-CCeEEEEEcCCcccccccccccccccccccccccccceeeeeE
Q 014953 151 NHRQSGADITISCLPMDDSRASDFGLMK----INNE-GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGV 225 (415)
Q Consensus 151 ~h~~~~~~~ti~~~~~~~~~~~~~g~v~----~d~~-~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi 225 (415)
.+.+.+.. ++.+.+++.+..+.||++. .+.+ .+|..+.|||..... .|++.-.|-
T Consensus 148 ~ye~~g~s-vi~v~ev~~e~v~kYGvi~~g~~~~~~~~~v~~~VEKP~~~~A-------------------PSnlai~GR 207 (291)
T COG1210 148 LYEETGGS-VIGVEEVPPEDVSKYGVIDPGEPVEKGVYKVKGMVEKPKPEEA-------------------PSNLAIVGR 207 (291)
T ss_pred HHHHhCCc-EEEEEECCHHHCcccceEecCccccCCeEEEEEEEECCCCCCC-------------------Ccceeeeee
Confidence 88887764 6777788776789999997 3333 489999999987653 368999999
Q ss_pred EEEeHHHHHHHHhhhCCC--CCcccccchhhhcccceEEEEEeCceEEecCCHHHHHHHHHhhcCCC
Q 014953 226 YLFKKEILLNLLRWRFPT--ANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHP 290 (415)
Q Consensus 226 yi~~~~~l~~~l~~~~~~--~~~~~~~~l~~l~~~~~i~~~~~~g~~~di~t~~~y~~an~~~l~~~ 290 (415)
|+++|++|. .|++..+. .+-...|.+..+++...+++|.+.|..+|+|++..|.+|+.++..+.
T Consensus 208 Yil~p~IFd-~L~~~~~G~ggEiQLTDai~~L~~~~~v~a~~~~GkryD~G~k~Gyi~a~v~~~l~~ 273 (291)
T COG1210 208 YVLTPEIFD-ILEETKPGAGGEIQLTDAIKKLLKKEPVLAYVFEGKRYDCGSKLGYIKANVEFALRR 273 (291)
T ss_pred eecCHHHHH-HHhhCCCCCCCEeeHHHHHHHHHhhCcEEEEEecccEEccCCcccHHHHHHHHHhhC
Confidence 999999996 66664332 23345688888999999999999999999999999999999887554
|
|
| >cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-32 Score=244.65 Aligned_cols=205 Identities=19% Similarity=0.317 Sum_probs=156.7
Q ss_pred eEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCc
Q 014953 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (415)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (415)
++|||||||.|+||+|||.++||||+||+|+ |||+|++++|.++|+++|+|+++++.+++.+|+.+...++. .+...
T Consensus 1 ~~aiIla~G~g~Rl~plt~~~pK~llpi~g~-piI~~~l~~l~~~Gi~~I~iv~~~~~~~i~~~l~~~~~~~~--~~~~~ 77 (217)
T cd04197 1 LQAVVLADSFNRRFRPLTKEKPRCLLPLANV-PLIDYTLEFLALNGVEEVFVFCCSHSDQIKEYIEKSKWSKP--KSSLM 77 (217)
T ss_pred CeEEEEcCCCcccccccccCCCceeeEECCE-ehHHHHHHHHHHCCCCeEEEEeCCCHHHHHHHHhhcccccc--ccCcc
Confidence 5899999999999999999999999999999 99999999999999999999999999999999976432111 11001
Q ss_pred eEEEecCccCCCCCCCccccchHHHHHHhh--hhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHc-----CCcEEE
Q 014953 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFH--WLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQS-----GADITI 161 (415)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~--~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~-----~~~~ti 161 (415)
.+.++... .+.|++++++... ..+ .++|++++||++++.|+.+++++|+++ ++++|+
T Consensus 78 ~i~~~~~~---------~~~~~~~al~~~~~~~~~-------~~~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~ 141 (217)
T cd04197 78 IVIIIMSE---------DCRSLGDALRDLDAKGLI-------RGDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTM 141 (217)
T ss_pred eEEEEeCC---------CcCccchHHHHHhhcccc-------CCCEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEE
Confidence 13332211 1358888886542 233 368999999999999999999999984 788999
Q ss_pred EEEEcCCCcC----CcccEEEECCC-CCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHH
Q 014953 162 SCLPMDDSRA----SDFGLMKINNE-GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEIL 233 (415)
Q Consensus 162 ~~~~~~~~~~----~~~g~v~~d~~-~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l 233 (415)
++.+.+++.. .+++++.+|++ ++|+.+.|||..+......++..++. ......+++++.++|+|+|++++|
T Consensus 142 ~~~~~~~~~~~~~~~~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~-~~~~~~i~~~l~d~~iYi~~~~vl 217 (217)
T cd04197 142 VLKEASPPHRTRRTGEEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLG-SNSEVEIRHDLLDCHIDICSPDVL 217 (217)
T ss_pred EEEeCCCccccccCCCceEEEEcCCCCcEEEEecccCCCCccccccCHHHhc-CCCcEEEECCceecCEEEeCCCCC
Confidence 9988765431 23678888766 89999999998765433334444433 223345678999999999999864
|
N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. |
| >cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-30 Score=229.60 Aligned_cols=199 Identities=51% Similarity=0.822 Sum_probs=158.3
Q ss_pred EEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCceE
Q 014953 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (415)
Q Consensus 11 aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 90 (415)
|||||||+|+||+|+|..+||+|+||+|+||||+|+++++.++|+++++|+++++.+++.+|+.+...++. +.....+
T Consensus 1 avILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~~~~~~--~~~~~~~ 78 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLNDHLGSGKEWDL--DRKNGGL 78 (200)
T ss_pred CEEeCCCCCcccchhhcCCcceeeEECCeeeeHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHhCCCcccC--CCCCCCE
Confidence 69999999999999999999999999997689999999999999999999999999999999864322211 1001123
Q ss_pred EEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEEEcCCCc
Q 014953 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSR 170 (415)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~~~~~~~ 170 (415)
.++...+.. .+++..||+++++.+++++++. ..++|+|++||++++.++.++++.|+++++++|+++.
T Consensus 79 ~~~~~~~~~---~~~~~~Gta~al~~a~~~i~~~---~~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~~~~------ 146 (200)
T cd02508 79 FILPPQQRK---GGDWYRGTADAIYQNLDYIERS---DPEYVLILSGDHIYNMDYREMLDFHIESGADITVVYK------ 146 (200)
T ss_pred EEeCcccCC---CCCcccCcHHHHHHHHHHHHhC---CCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEh------
Confidence 444332210 1234589999999999988531 1378999999999999999999999998888888765
Q ss_pred CCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCC-CCCcccc
Q 014953 171 ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP-TANDFGS 249 (415)
Q Consensus 171 ~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~-~~~~~~~ 249 (415)
+++|+|+|++++|..+++.... ...++..
T Consensus 147 --------------------------------------------------~~~g~yi~~~~~~~~~l~~~~~~~~~~~~~ 176 (200)
T cd02508 147 --------------------------------------------------ASMGIYIFSKDLLIELLEEDAADGSHDFGK 176 (200)
T ss_pred --------------------------------------------------hcCEEEEEEHHHHHHHHHHHhccCcchhHH
Confidence 1379999999998767665322 2446678
Q ss_pred cchhhhcccceEEEEEeCceEEec
Q 014953 250 EIIPASANEQFLKAYLFNDYWEDI 273 (415)
Q Consensus 250 ~~l~~l~~~~~i~~~~~~g~~~di 273 (415)
|+++.+++++++++|.++|||.||
T Consensus 177 d~i~~l~~~~~v~~~~~~g~w~di 200 (200)
T cd02508 177 DIIPAMLKKLKIYAYEFNGYWADI 200 (200)
T ss_pred HHHHHHhccCcEEEEEeCCeEecC
Confidence 999999999999999999999986
|
ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2. |
| >cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-30 Score=233.09 Aligned_cols=222 Identities=18% Similarity=0.254 Sum_probs=166.4
Q ss_pred EEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCceE
Q 014953 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (415)
Q Consensus 11 aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 90 (415)
+||||||+|+||+|+|..+||||+|++|+ |||+|+++.|.++|++++++++++... ..+++...+.... .+.. +
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~ivvv~~~~~~-~~~~~~~~~~~~~---~~~~-i 74 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEVDGK-PMIEWVIESLAKIFDSRFIFICRDEHN-TKFHLDESLKLLA---PNAT-V 74 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEECCE-EHHHHHHHhhhccCCceEEEEEChHHh-hhhhHHHHHHHhC---CCCE-E
Confidence 48999999999999999999999999999 999999999999999999999864321 1222222210000 0111 2
Q ss_pred EEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEEEcCCCc
Q 014953 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSR 170 (415)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~~~~~~~ 170 (415)
.+.+. . ..||+++++.++.++.. .++|++++||++++.++.+++++|.+.+.+.++++...+
T Consensus 75 ~~~~~-~---------~~g~~~~l~~a~~~l~~-----~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~~--- 136 (231)
T cd04183 75 VELDG-E---------TLGAACTVLLAADLIDN-----DDPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFSS--- 136 (231)
T ss_pred EEeCC-C---------CCcHHHHHHHHHhhcCC-----CCCEEEEecceeeccCHHHHHHHhhccCCceEEEEEeCC---
Confidence 22211 1 26999999999988842 478999999999999999999989887777777666552
Q ss_pred CCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHH-HHHHHHhhhC----C-CC
Q 014953 171 ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKE-ILLNLLRWRF----P-TA 244 (415)
Q Consensus 171 ~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~-~l~~~l~~~~----~-~~ 244 (415)
..+|+.+.+|++|+|..+.+|+.. +.+.++|+|+|+++ .|.+.+++.. . ..
T Consensus 137 ~~~~~~v~~d~~~~v~~~~ek~~~-----------------------~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~~~~ 193 (231)
T cd04183 137 HPRWSYVKLDENGRVIETAEKEPI-----------------------SDLATAGLYYFKSGSLFVEAAKKMIRKDDSVNG 193 (231)
T ss_pred CCCeEEEEECCCCCEEEeEEcCCC-----------------------CCccEeEEEEECcHHHHHHHHHHHHhhcccccC
Confidence 457999999989999999887432 24678999999997 5555555311 1 12
Q ss_pred Ccccccchhhhcccc-eEEEEEe-CceEEecCCHHHH
Q 014953 245 NDFGSEIIPASANEQ-FLKAYLF-NDYWEDIGTIRSF 279 (415)
Q Consensus 245 ~~~~~~~l~~l~~~~-~i~~~~~-~g~~~di~t~~~y 279 (415)
..+..++++.+++++ ++.+|.+ +++|.||+||++|
T Consensus 194 ~~~~~d~i~~~~~~g~~v~~~~~~~~~w~di~t~~dl 230 (231)
T cd04183 194 EFYISPLYNELILDGKKVGIYLIDKDDYHSFGTPEDL 230 (231)
T ss_pred cEEEhHHHHHHHHcCCEEEEEEeccccEEEcCChHhc
Confidence 234568888888664 6999999 6999999999997
|
GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. |
| >cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-30 Score=234.41 Aligned_cols=222 Identities=20% Similarity=0.267 Sum_probs=168.6
Q ss_pred EEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCceE
Q 014953 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (415)
Q Consensus 11 aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 90 (415)
|||||||.|+||+|+|..+||+|+|++|+ |||+|++++|.++|+++|+|+++++.+++.+|+... .+ +
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~~g~-~li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~--------~~---~ 68 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEINGK-PLLERQIETLKEAGIDDIVIVTGYKKEQIEELLKKY--------PN---I 68 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeECCE-EHHHHHHHHHHHCCCceEEEEeccCHHHHHHHHhcc--------CC---e
Confidence 69999999999999999999999999999 999999999999999999999999989998887531 11 3
Q ss_pred EEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEEEcCCCc
Q 014953 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSR 170 (415)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~~~~~~~ 170 (415)
.++...+.. ..|++++++.++.++ .++|++++||++++. ++++.|.+.+++.|+++.+.....
T Consensus 69 ~~~~~~~~~-------~~g~~~s~~~~~~~~-------~~~~lv~~~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 131 (229)
T cd02523 69 KFVYNPDYA-------ETNNIYSLYLARDFL-------DEDFLLLEGDVVFDP---SILERLLSSPADNAILVDKKTKEW 131 (229)
T ss_pred EEEeCcchh-------hhCcHHHHHHHHHHc-------CCCEEEEeCCEecCH---HHHHHHHcCCCCCeEEEccCcccc
Confidence 333222210 269999999999887 278999999998866 567778888888898887743333
Q ss_pred CCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhh---CC--CCC
Q 014953 171 ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR---FP--TAN 245 (415)
Q Consensus 171 ~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~---~~--~~~ 245 (415)
...++....| ++++..+.+|+..+. ..++.++|+|+|+++++..+.+.. .+ ...
T Consensus 132 ~~~~~~~~~~-~~~v~~~~~k~~~~~--------------------~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~ 190 (229)
T cd02523 132 EDEYVKDLDD-AGVLLGIISKAKNLE--------------------EIQGEYVGISKFSPEDADRLAEALEELIEAGRVN 190 (229)
T ss_pred cccceeeecC-ccceEeecccCCCcc--------------------hhceEEEeEEEECHHHHHHHHHHHHHHHhccccc
Confidence 3455544333 378889998876542 135789999999999986554321 11 234
Q ss_pred cccccchhhhcccc--eEEEEEeCceEEecCCHHHHHHHH
Q 014953 246 DFGSEIIPASANEQ--FLKAYLFNDYWEDIGTIRSFFEAN 283 (415)
Q Consensus 246 ~~~~~~l~~l~~~~--~i~~~~~~g~~~di~t~~~y~~an 283 (415)
.+..++++.++++. .++.+.. ++|.||+++++|.+|+
T Consensus 191 ~~~~d~i~~l~~~~~~~v~~~~~-~~w~dI~~~ed~~~a~ 229 (229)
T cd02523 191 LYYEDALQRLISEEGVKVKDISD-GFWYEIDDLEDLERAE 229 (229)
T ss_pred ccHHHHHHHHHhhcCeeEEEcCC-CCEEEeCCHHHHHhhC
Confidence 55678899888743 4445555 8999999999999873
|
This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP |
| >cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-28 Score=217.90 Aligned_cols=203 Identities=19% Similarity=0.322 Sum_probs=153.7
Q ss_pred eEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCC-
Q 014953 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGD- 87 (415)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~- 87 (415)
|+|||||||.|+||+|+|...||+|+|++|+ |||+|++++|.++|+++|+|+++++.+++.+|+.+.+.. .+..
T Consensus 1 ~~avIlagg~g~rl~plt~~~pK~llpv~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~~~~----~~~~~ 75 (216)
T cd02507 1 FQAVVLADGFGSRFLPLTSDIPKALLPVANV-PLIDYTLEWLEKAGVEEVFVVCCEHSQAIIEHLLKSKWS----SLSSK 75 (216)
T ss_pred CeEEEEeCCCccccCccccCCCcccceECCE-EHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHHhcccc----cccCC
Confidence 6899999999999999999999999999999 999999999999999999999999999999998765311 0111
Q ss_pred ceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHH--HHHcCCcEEEEEEE
Q 014953 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQN--HRQSGADITISCLP 165 (415)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~--h~~~~~~~ti~~~~ 165 (415)
..+.+....+. .+.|++++++.++.++ .++|+|++||++++.++.+++++ +...++++++++..
T Consensus 76 ~~v~~~~~~~~-------~~~Gta~~l~~~~~~i-------~~dflv~~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~ 141 (216)
T cd02507 76 MIVDVITSDLC-------ESAGDALRLRDIRGLI-------RSDFLLLSCDLVSNIPLSELLEERRKKDKNAIATLTVLL 141 (216)
T ss_pred ceEEEEEccCC-------CCCccHHHHHHHhhcC-------CCCEEEEeCCEeecCCHHHHHHHHHhhCcccceEEEEEe
Confidence 11223222221 2369999999998887 36899999999999999999976 55556666666655
Q ss_pred cCCCc-------CCcccEEEECCC---CCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHH
Q 014953 166 MDDSR-------ASDFGLMKINNE---GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEIL 233 (415)
Q Consensus 166 ~~~~~-------~~~~g~v~~d~~---~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l 233 (415)
..... ..+++++.+|++ .++..+.++++... ...++..++...+ ...+++++.++|+|+|+++++
T Consensus 142 ~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~--~~~i~~~~l~~~~-~~~i~~dl~D~~iyi~s~~Vl 216 (216)
T cd02507 142 ASPPVSTEQSKKTEEEDVIAVDSKTQRLLLLHYEEDLDEDL--ELIIRKSLLSKHP-NVTIRTDLLDCHIYICSPDVL 216 (216)
T ss_pred ccCCCCccccccCCCCcEEEEcCCCCceEEEechhhcCcCc--ccccCHHHHhcCC-CEEEEcCcccccEEEecCcCC
Confidence 43221 456888999887 47777777776432 2224455555443 445688999999999998764
|
N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. |
| >cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.6e-28 Score=215.13 Aligned_cols=201 Identities=23% Similarity=0.342 Sum_probs=151.6
Q ss_pred eEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccCh-hHHHHHHHhhccCCCCcccCC
Q 014953 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNS-ASLNRHLARAYNYGSGVTFGD 87 (415)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~-~~i~~~l~~~~~~~~~~~~~~ 87 (415)
|+|||||||+|+||+|+|...||+|+|++|+ |||+|+++++.++|+++|+|++++.. +.+.+++.... +... ..
T Consensus 1 ~~aVILAgG~g~R~~plt~~~pK~Llpv~g~-pli~~~l~~l~~~g~~~iivv~~~~~~~~i~~~l~~~~-~~~~--~~- 75 (214)
T cd04198 1 FQAVILAGGGGSRLYPLTDNIPKALLPVANK-PMIWYPLDWLEKAGFEDVIVVVPEEEQAEISTYLRSFP-LNLK--QK- 75 (214)
T ss_pred CEEEEEeCCCCCcCCccccCCCcccCEECCe-eHHHHHHHHHHHCCCCeEEEEECHHHHHHHHHHHHhcc-cccC--cc-
Confidence 6899999999999999999999999999999 99999999999999999999999765 45766665321 1110 00
Q ss_pred ceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEEEcC
Q 014953 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMD 167 (415)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~~~~ 167 (415)
..+.+.. +. ...||+++|+.+.+.+ .++|+|++||.+++.++.++++.|++.++.+|+++.+..
T Consensus 76 ~~~~~~~--~~-------~~~gt~~al~~~~~~i-------~~d~lv~~~D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~ 139 (214)
T cd04198 76 LDEVTIV--LD-------EDMGTADSLRHIRKKI-------KKDFLVLSCDLITDLPLIELVDLHRSHDASLTVLLYPPP 139 (214)
T ss_pred eeEEEec--CC-------CCcChHHHHHHHHhhc-------CCCEEEEeCccccccCHHHHHHHHhccCCcEEEEEeccC
Confidence 1111211 11 1369999999998876 368999999999999999999999999999999988754
Q ss_pred CC-----------cCCcccEEEECCC-CCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHH
Q 014953 168 DS-----------RASDFGLMKINNE-GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEIL 233 (415)
Q Consensus 168 ~~-----------~~~~~g~v~~d~~-~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l 233 (415)
.. ....+.++.+|++ +++..+.+..+.. ....++..++...| +..+++++.++|+|+|+++++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ll~~~~~~~~~--~~~~~~~~~l~~~~-~~~i~~~l~D~hiyi~~~~v~ 214 (214)
T cd04198 140 VSSEQKGGKGKSKKADERDVIGLDEKTQRLLFITSEEDLD--EDLELRKSLLKRHP-RVTITTKLLDAHVYIFKRWVL 214 (214)
T ss_pred CcccccCCcccccCCCCCceEEEcCCCCEEEEECCHHHhh--hhhhHHHHHHHhCC-CEEEEcCcccceEEEEEeeeC
Confidence 21 1234677777764 6888776543222 23344566666443 445688999999999998764
|
N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. |
| >cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-27 Score=219.66 Aligned_cols=233 Identities=21% Similarity=0.323 Sum_probs=164.8
Q ss_pred eEEEEEcCCCCCccccccc-CCcccceeeCC-cceeehhehhhhhcc-CCcEEEEEcccChh-HHHHHHHhhccCCCCcc
Q 014953 9 VAAVILGGGAGTRLYPLTK-QRAKPAVPIGG-AYRLIDVPMSNCINS-GINKVYILTQYNSA-SLNRHLARAYNYGSGVT 84 (415)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~-~~pK~llpv~g-~~pli~~~l~~l~~~-gi~~I~vv~~~~~~-~i~~~l~~~~~~~~~~~ 84 (415)
|++||||||.||||+|+|. .+||+|+|++| + |||+|+++++... ++++|+|++++.+. .+.+++.+ . ..
T Consensus 1 m~~vILAgG~GtRl~PlS~~~~PK~ll~l~g~~-~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~~-~--~~--- 73 (274)
T cd02509 1 IYPVILAGGSGTRLWPLSRESYPKQFLKLFGDK-SLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPE-G--LP--- 73 (274)
T ss_pred CEEEEEcccccccCCcCCCCCCCceEeEcCCCC-cHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHhh-c--CC---
Confidence 6899999999999999996 79999999999 7 9999999999998 59999999997653 45555532 1 01
Q ss_pred cCCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecc--cChHHHHHHHHH---cCCcE
Q 014953 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYR--MDYMDFVQNHRQ---SGADI 159 (415)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~--~~l~~~l~~h~~---~~~~~ 159 (415)
.+.++.... ..||++++..+..++... ...+.++|++||+++. .+|.++++.+.+ .++.+
T Consensus 74 ----~~~ii~ep~---------~~gTa~ai~~a~~~~~~~--~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~v 138 (274)
T cd02509 74 ----EENIILEPE---------GRNTAPAIALAALYLAKR--DPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLV 138 (274)
T ss_pred ----CceEEECCC---------CCCcHHHHHHHHHHHHhc--CCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEE
Confidence 123332211 269999999998887521 1246899999999775 457777765543 56778
Q ss_pred EEEEEEcCCCcCCcccEEEECCCC-----CeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHH
Q 014953 160 TISCLPMDDSRASDFGLMKINNEG-----RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILL 234 (415)
Q Consensus 160 ti~~~~~~~~~~~~~g~v~~d~~~-----~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~ 234 (415)
|+...+... ...||++..+++. +|.+|.|||+....... .....+++++|+|+|+++.|.
T Consensus 139 t~gi~p~~~--~t~yGyI~~~~~~~~~~~~V~~f~EKP~~~~a~~~-------------~~~g~~~wNsGiyi~~~~~l~ 203 (274)
T cd02509 139 TFGIKPTRP--ETGYGYIEAGEKLGGGVYRVKRFVEKPDLETAKEY-------------LESGNYLWNSGIFLFRAKTFL 203 (274)
T ss_pred EEEeeecCC--CCCeEEEEeCCcCCCCceEEeEEEECcChHHHHHH-------------hhcCCeEEECceeeeeHHHHH
Confidence 888877643 4789999998653 89999999986542110 001236899999999998877
Q ss_pred HHHhhhCCCC----------------Ccccccchhh---------hc-ccceEEEEEeCceEEecCCHHH
Q 014953 235 NLLRWRFPTA----------------NDFGSEIIPA---------SA-NEQFLKAYLFNDYWEDIGTIRS 278 (415)
Q Consensus 235 ~~l~~~~~~~----------------~~~~~~~l~~---------l~-~~~~i~~~~~~g~~~di~t~~~ 278 (415)
..++...+.. ..+..+.++. ++ +..++.+++.+..|.|+|++++
T Consensus 204 ~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sidyavme~~~~~~v~~~~~~W~D~G~w~~ 273 (274)
T cd02509 204 EELKKHAPDIYEALEKALAAAGTDDFLRLLEEAFAKIPSISIDYAVMEKTKKVAVVPADFGWSDLGSWDA 273 (274)
T ss_pred HHHHHHCHHHHHHHHHHHHhcCCchhhhhhHHHHhhCCCcccchHhheeCCCcEEEecCCCcCcccCccc
Confidence 7766543320 0011122222 11 1356889999999999999875
|
GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes. |
| >cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-26 Score=208.94 Aligned_cols=221 Identities=24% Similarity=0.365 Sum_probs=169.9
Q ss_pred EEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCceE
Q 014953 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (415)
Q Consensus 11 aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 90 (415)
|||||||.|+||+| .+||+|+|++|+ |||+|++++|.++|++++++++++..+.+.+++.. ++ +
T Consensus 1 aiIlaaG~g~R~~~---~~pK~l~~v~gk-pli~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~~---------~~---~ 64 (229)
T cd02540 1 AVILAAGKGTRMKS---DLPKVLHPLAGK-PMLEHVLDAARALGPDRIVVVVGHGAEQVKKALAN---------PN---V 64 (229)
T ss_pred CEEEeCCCCccCCC---CCChhcceeCCc-cHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhCC---------CC---c
Confidence 69999999999985 689999999999 99999999999999999999999988888777642 11 2
Q ss_pred EEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-e-cccChHHHHHHHHHcCCcEEEEEEEcCC
Q 014953 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-L-YRMDYMDFVQNHRQSGADITISCLPMDD 168 (415)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i-~~~~l~~~l~~h~~~~~~~ti~~~~~~~ 168 (415)
.++.... ..|++++++.++.++.. ..++|++++||. + ...++..+++.|.+.++++++...+..+
T Consensus 65 ~~~~~~~---------~~g~~~ai~~a~~~~~~----~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~ 131 (229)
T cd02540 65 EFVLQEE---------QLGTGHAVKQALPALKD----FEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELED 131 (229)
T ss_pred EEEECCC---------CCCCHHHHHHHHHhhcc----CCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEcCC
Confidence 2222111 25999999999998852 147899999998 3 3556899999998877888877776654
Q ss_pred CcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC---CC
Q 014953 169 SRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT---AN 245 (415)
Q Consensus 169 ~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~---~~ 245 (415)
+..|+.+..+++|+|..+.|++..... + ...+++++|+|+|+++.|..+++..... ..
T Consensus 132 --p~~~~~~~~~~~~~v~~~~ek~~~~~~---------------~--~~~~~~~~giy~~~~~~~~~~l~~~~~~~~~~~ 192 (229)
T cd02540 132 --PTGYGRIIRDGNGKVLRIVEEKDATEE---------------E--KAIREVNAGIYAFDAEFLFEALPKLTNNNAQGE 192 (229)
T ss_pred --CCCccEEEEcCCCCEEEEEECCCCChH---------------H--HhhceEEeEEEEEEHHHHHHHHHHcccccCCCc
Confidence 567888888877899999998753210 0 0125789999999998776666653221 23
Q ss_pred cccccchhhhccc-ceEEEEEeCce--EEecCCHHHH
Q 014953 246 DFGSEIIPASANE-QFLKAYLFNDY--WEDIGTIRSF 279 (415)
Q Consensus 246 ~~~~~~l~~l~~~-~~i~~~~~~g~--~~di~t~~~y 279 (415)
.+..++++.+++. .+|+++.++|| |+.|+||.++
T Consensus 193 ~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~ 229 (229)
T cd02540 193 YYLTDIIALAVADGLKVAAVLADDEEEVLGVNDRVQL 229 (229)
T ss_pred EEHHHHHHHHHHCCCEEEEEEcCCcceEecCCChHhC
Confidence 4467888888865 57999999876 7888888764
|
The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively. |
| >TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.7e-25 Score=217.11 Aligned_cols=240 Identities=20% Similarity=0.302 Sum_probs=162.6
Q ss_pred eEEEEEcCCCCCcccccccC-CcccceeeCC-cceeehhehhhhhccCCcEEEEEcccChh-HHHHHHHhhccCCCCccc
Q 014953 9 VAAVILGGGAGTRLYPLTKQ-RAKPAVPIGG-AYRLIDVPMSNCINSGINKVYILTQYNSA-SLNRHLARAYNYGSGVTF 85 (415)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~-~pK~llpv~g-~~pli~~~l~~l~~~gi~~I~vv~~~~~~-~i~~~l~~~~~~~~~~~~ 85 (415)
|.|||||||.||||+|||.. +||+|+|++| + |||+|++++|...++++++|+++..+. .+.+.+.. + + +
T Consensus 1 ~~~vILAgG~GtRl~PlS~~~~PK~~l~l~g~~-~ll~~tl~~l~~~~~~~iviv~~~~~~~~~~~~l~~-~--~----~ 72 (468)
T TIGR01479 1 IIPVILAGGSGTRLWPLSRELYPKQFLALVGDL-TMLQQTLKRLAGLPCSSPLVICNEEHRFIVAEQLRE-I--G----K 72 (468)
T ss_pred CEEEEecCcccccCCccccCCCCCceeEcCCCC-cHHHHHHHHHhcCCCcCcEEecCHHHHHHHHHHHHH-c--C----C
Confidence 57999999999999999996 8999999977 7 999999999999999999999986543 33334422 1 1 0
Q ss_pred CCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeeccc--ChHHHHHHH---HHcCCcEE
Q 014953 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRM--DYMDFVQNH---RQSGADIT 160 (415)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~--~l~~~l~~h---~~~~~~~t 160 (415)
....++... ..+||++++..+..++.... ...+.++|++||+++.. +|.++++++ .++++.+|
T Consensus 73 --~~~~~i~Ep---------~~~gTa~ai~~aa~~~~~~~-~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvt 140 (468)
T TIGR01479 73 --LASNIILEP---------VGRNTAPAIALAALLAARRN-GEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVT 140 (468)
T ss_pred --CcceEEecc---------cccCchHHHHHHHHHHHHHH-CCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEE
Confidence 001122111 13699999988776663100 01345999999986543 478887765 34556666
Q ss_pred EEEEEcCCCcCCcccEEEECC------CCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHH
Q 014953 161 ISCLPMDDSRASDFGLMKINN------EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILL 234 (415)
Q Consensus 161 i~~~~~~~~~~~~~g~v~~d~------~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~ 234 (415)
+...+... ...||++..++ .++|.+|.|||+....... .....+++++|+|+|+++.|.
T Consensus 141 lgi~p~~p--~t~YGyI~~~~~~~~~~~~~V~~f~EKP~~~~a~~~-------------l~~g~~~wNsGif~~~~~~ll 205 (468)
T TIGR01479 141 FGIVPTHP--ETGYGYIRRGEPLAGEDVYQVQRFVEKPDLATAQAY-------------LESGDYYWNSGMFLFRASRYL 205 (468)
T ss_pred EEecCCCC--CCCceEEEeCCccCCCCceEEeEEEECCChHHHHHH-------------HhcCCeEEEeeEEEEEHHHHH
Confidence 66655433 57899999873 2589999999986542111 011247899999999977666
Q ss_pred HHHhhhCCC-----------------CCcccccchh---------hhcc-cceEEEEEeCceEEecCCHHHHHHHH
Q 014953 235 NLLRWRFPT-----------------ANDFGSEIIP---------ASAN-EQFLKAYLFNDYWEDIGTIRSFFEAN 283 (415)
Q Consensus 235 ~~l~~~~~~-----------------~~~~~~~~l~---------~l~~-~~~i~~~~~~g~~~di~t~~~y~~an 283 (415)
..+.+..++ ...+..++++ .+++ ..++.+++.+..|.|+|++++|.++.
T Consensus 206 ~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iSiDyavmEk~~~v~vv~~~~~W~DvGsw~~l~~~~ 281 (468)
T TIGR01479 206 AELKKHAPDIYEACEAAVEASEPDLDFIRLDKEAFEQCPSESIDYAVMEKTADAVVVPMDAGWSDVGSWSALWEIS 281 (468)
T ss_pred HHHHHHCHHHHHHHHHHHHhccCCcccceeCHHHHhhCcCCCeeeeeeEcCCcEEEEeCCCCccccCCHHHHHHhh
Confidence 555543221 0111122333 1222 35689999999999999999999874
|
This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal. |
| >COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.7e-25 Score=189.76 Aligned_cols=224 Identities=15% Similarity=0.233 Sum_probs=150.4
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEc-ccChhHHHHHHHhhccCCCCcc
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILT-QYNSASLNRHLARAYNYGSGVT 84 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~-~~~~~~i~~~l~~~~~~~~~~~ 84 (415)
|..|+|||||||+|+||+| +.||||+.++|+ ++|.|++++|.++|++++++|+ +|..+.+.+++.+. ++
T Consensus 1 ~~~~kavILAAG~GsRlg~---~~PK~Lvev~gr-~ii~~~i~~L~~~gi~e~vvV~~g~~~~lve~~l~~~-~~----- 70 (239)
T COG1213 1 MHPMKAVILAAGFGSRLGP---DIPKALVEVGGR-EIIYRTIENLAKAGITEFVVVTNGYRADLVEEFLKKY-PF----- 70 (239)
T ss_pred CCceeEEEEecccccccCC---CCCchhhhcCCe-EeHHHHHHHHHHcCCceEEEEeccchHHHHHHHHhcC-Cc-----
Confidence 5679999999999999998 899999999999 9999999999999999999999 88878777777542 12
Q ss_pred cCCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEE
Q 014953 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCL 164 (415)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~ 164 (415)
. ..++...... -.+|+.+|+.+++++. ..|++++||+++...+ ++...+.+.. ++.+.
T Consensus 71 -~---~~iv~N~~y~-------ktN~~~Sl~~akd~~~-------~~fii~~sD~vye~~~---~e~l~~a~~~-~li~d 128 (239)
T COG1213 71 -N---AKIVINSDYE-------KTNTGYSLLLAKDYMD-------GRFILVMSDHVYEPSI---LERLLEAPGE-GLIVD 128 (239)
T ss_pred -c---eEEEeCCCcc-------cCCceeEEeeehhhhc-------CcEEEEeCCEeecHHH---HHHHHhCcCC-cEEEe
Confidence 1 2233222111 1367999999999884 6799999999998863 3333333322 33333
Q ss_pred EcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCC
Q 014953 165 PMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA 244 (415)
Q Consensus 165 ~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~~ 244 (415)
..+......-.....+++|++..+.++-.. .+-.++|++.++.+.|....+......
T Consensus 129 ~~~~~~~~~ea~kv~~e~G~i~~igK~l~e-----------------------~~~e~iGi~~l~~~i~~~~~~~~~e~~ 185 (239)
T COG1213 129 RRPRYVGVEEATKVKDEGGRIVEIGKDLTE-----------------------YDGEDIGIFILSDSIFEDTYELLVERS 185 (239)
T ss_pred ccccccccCceeEEEecCCEEehhcCCccc-----------------------ccceeeeeEEechHHHHHHHHHHhhhh
Confidence 333211122223345578999988866552 245789999999997765433221111
Q ss_pred CcccccchhhhcccceEEEEE----e-CceEEecCCHHHHHHHHHhhcC
Q 014953 245 NDFGSEIIPASANEQFLKAYL----F-NDYWEDIGTIRSFFEANLALTA 288 (415)
Q Consensus 245 ~~~~~~~l~~l~~~~~i~~~~----~-~g~~~di~t~~~y~~an~~~l~ 288 (415)
. .-+.+......+.+-. + ..+|+||+||||+.+|.+.+..
T Consensus 186 ~----~~~~~~~~~~~~~~~~~di~~~g~~w~EVDtpeDl~~ar~~~~~ 230 (239)
T COG1213 186 E----YDYREVEKEAGLPFTEVDIHVDGLFWMEVDTPEDLERARKYLVP 230 (239)
T ss_pred h----HHHHHHHHHhCCceEEeeccccCceeEecCCHHHHHHHHHHHHH
Confidence 0 1112222221122222 2 3579999999999999987754
|
|
| >PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-24 Score=197.16 Aligned_cols=234 Identities=19% Similarity=0.243 Sum_probs=158.2
Q ss_pred ceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCC
Q 014953 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGD 87 (415)
Q Consensus 8 ~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~ 87 (415)
++.|||||+|.|+||. ||+|+|++|+ |||+|+++.|.++++++|+|++++ +.+.+++.+ ++
T Consensus 2 ~~~~iIlA~g~S~R~~------~K~Ll~i~Gk-pll~~~l~~l~~~~i~~ivvv~~~--~~i~~~~~~---------~~- 62 (245)
T PRK05450 2 KFLIIIPARYASTRLP------GKPLADIGGK-PMIVRVYERASKAGADRVVVATDD--ERIADAVEA---------FG- 62 (245)
T ss_pred ceEEEEecCCCCCCCC------CCcccccCCc-CHHHHHHHHHHhcCCCeEEEECCc--HHHHHHHHH---------cC-
Confidence 5789999999999993 7999999999 999999999999999999998864 556666642 11
Q ss_pred ceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecc-cChHHHHHHHHHcCCcEEEEEEE
Q 014953 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYR-MDYMDFVQNHRQSGADITISCLP 165 (415)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~-~~l~~~l~~h~~~~~~~ti~~~~ 165 (415)
+.++...+. .+.|++.... +...+.. ...+.+++++||+ +++ ..+.++++.|..+++++++++.+
T Consensus 63 --~~v~~~~~~-------~~~gt~~~~~-~~~~~~~---~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~ 129 (245)
T PRK05450 63 --GEVVMTSPD-------HPSGTDRIAE-AAAKLGL---ADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVP 129 (245)
T ss_pred --CEEEECCCc-------CCCchHHHHH-HHHhcCC---CCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeee
Confidence 122221111 1246665443 3333321 0146799999999 554 44889999888776777776666
Q ss_pred cCC----CcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhC
Q 014953 166 MDD----SRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF 241 (415)
Q Consensus 166 ~~~----~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~ 241 (415)
..+ ..++.++++ +|++|+|+.|.|+|..+.... .+++ +..+++.++|+|+|+++++..+.+..
T Consensus 130 ~~~~~~~~~~~~~~v~-~d~~g~v~~~~e~~~~~~~~~----------~~~~-~~~~~~~~~Giy~~~~~~l~~~~~~~- 196 (245)
T PRK05450 130 IHDAEEAFNPNVVKVV-LDADGRALYFSRAPIPYGRDA----------FADS-APTPVYRHIGIYAYRRGFLRRFVSLP- 196 (245)
T ss_pred cCCHHHhcCcCCCEEE-eCCCCcEEEecCCCCCCCCCc----------cccc-cCccccEEEEEEecCHHHHHHHHhCC-
Confidence 532 234566755 888899999999985432100 0000 01247899999999999997665432
Q ss_pred CCCC-ccc-ccchhhhcccceEEEEEeCc-eEEecCCHHHHHHHHHhh
Q 014953 242 PTAN-DFG-SEIIPASANEQFLKAYLFND-YWEDIGTIRSFFEANLAL 286 (415)
Q Consensus 242 ~~~~-~~~-~~~l~~l~~~~~i~~~~~~g-~~~di~t~~~y~~an~~~ 286 (415)
+... ... .++++.+-++.+++++.++| +|.|||||+||.+|++.+
T Consensus 197 ~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~w~~i~~~~dl~~a~~~~ 244 (245)
T PRK05450 197 PSPLEKIESLEQLRALENGYRIHVVVVEEAPSIGVDTPEDLERVRALL 244 (245)
T ss_pred CCccccchhHHHHHHHHCCCceEEEEeCCCCCCCcCCHHHHHHHHHHh
Confidence 1111 111 11233333567899999996 999999999999999764
|
|
| >cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide | Back alignment and domain information |
|---|
Probab=99.92 E-value=9e-24 Score=193.01 Aligned_cols=227 Identities=19% Similarity=0.287 Sum_probs=155.8
Q ss_pred ceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhcc-CCcEEEEEcccChhHHHHHHHhhccCCCCcccC
Q 014953 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (415)
Q Consensus 8 ~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~-gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (415)
++.|||||+|.|+||. ||+|+|++|+ |||+|++++|.++ |+++|+|++++ +.+.+++.+ + +
T Consensus 1 ~~~~iIlA~g~s~R~~------~K~l~~i~gk-pll~~~l~~l~~~~~i~~ivvv~~~--~~i~~~~~~-~--------~ 62 (239)
T cd02517 1 KVIVVIPARYASSRLP------GKPLADIAGK-PMIQHVYERAKKAKGLDEVVVATDD--ERIADAVES-F--------G 62 (239)
T ss_pred CEEEEEecCCCCCCCC------CCCCcccCCc-CHHHHHHHHHHhCCCCCEEEEECCc--HHHHHHHHH-c--------C
Confidence 4679999999999994 7999999999 9999999999998 99999999864 566666642 1 1
Q ss_pred CceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ec-ccChHHHHHHHHHc-CCcEEEEE
Q 014953 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LY-RMDYMDFVQNHRQS-GADITISC 163 (415)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~-~~~l~~~l~~h~~~-~~~~ti~~ 163 (415)
+.++...+. ...|+++ +..++..+.. ..+.|++++||+ ++ ..++..+++.|... +.++++++
T Consensus 63 ---~~~~~~~~~-------~~~gt~~-~~~~~~~~~~----~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~ 127 (239)
T cd02517 63 ---GKVVMTSPD-------HPSGTDR-IAEVAEKLDA----DDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLA 127 (239)
T ss_pred ---CEEEEcCcc-------cCchhHH-HHHHHHhcCC----CCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEE
Confidence 222211111 1247775 5555555531 136799999998 44 45689999988776 67888888
Q ss_pred EEcCCCc----CCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhh
Q 014953 164 LPMDDSR----ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRW 239 (415)
Q Consensus 164 ~~~~~~~----~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~ 239 (415)
.+.+++. ...++ +..+++|+|+.|.+++...... +.+ ..+++.++|+|+|++++|..+...
T Consensus 128 ~~~~~~~~~~~~~~~~-v~~~~~~~v~~~~~~~~~~~~~------------~~~--~~~~~~~~Giy~~~~~~~~~~~~~ 192 (239)
T cd02517 128 TPISDEEELFNPNVVK-VVLDKDGYALYFSRSPIPYPRD------------SSE--DFPYYKHIGIYAYRRDFLLRFAAL 192 (239)
T ss_pred EEcCCHHHccCCCCCE-EEECCCCCEEEecCCCCCCCCC------------CCC--CCceeEEEEEEEECHHHHHHHHhC
Confidence 7765421 22333 5567778999998765432100 000 013689999999999999866542
Q ss_pred hCCCCCcccccchh--hhcc-cceEEEEEeCceEEecCCHHHHHHHHH
Q 014953 240 RFPTANDFGSEIIP--ASAN-EQFLKAYLFNDYWEDIGTIRSFFEANL 284 (415)
Q Consensus 240 ~~~~~~~~~~~~l~--~l~~-~~~i~~~~~~g~~~di~t~~~y~~an~ 284 (415)
. ....+ ..+.++ .+++ +.+++++..+++|.|||||+||.+|++
T Consensus 193 ~-~~~~~-~~~~~~~~~~~~~g~~v~~~~~~~~w~~i~t~~dl~~a~~ 238 (239)
T cd02517 193 P-PSPLE-QIESLEQLRALENGYKIKVVETDHESIGVDTPEDLERVEA 238 (239)
T ss_pred C-Cchhh-hhhhHHHHHHHHCCCceEEEEeCCCCCCCCCHHHHHHHHh
Confidence 1 11111 122322 2344 456999999999999999999999975
|
CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design. |
| >PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.2e-22 Score=181.26 Aligned_cols=225 Identities=18% Similarity=0.303 Sum_probs=151.6
Q ss_pred ceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhcc-CCcEEEEEcccChhHHHHHHHhhccCCCCcccC
Q 014953 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (415)
Q Consensus 8 ~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~-gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (415)
++.|||||+|.++||. +|+|+|++|+ |||+|+++.+.++ ++++|+|++++ +.+.+++.+ + +
T Consensus 2 ~~~aiIlA~g~s~R~~------~K~l~~i~Gk-Pli~~~i~~l~~~~~~~~ivv~t~~--~~i~~~~~~-~--------~ 63 (238)
T PRK13368 2 KVVVVIPARYGSSRLP------GKPLLDILGK-PMIQHVYERAAQAAGVEEVYVATDD--QRIEDAVEA-F--------G 63 (238)
T ss_pred cEEEEEecCCCCCCCC------CCccCccCCc-CHHHHHHHHHHhcCCCCeEEEECCh--HHHHHHHHH-c--------C
Confidence 5789999999999993 5999999999 9999999999998 89999999864 567676643 1 1
Q ss_pred CceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe--ecccChHHHHHHHHHcCC-cEEEEE
Q 014953 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGA-DITISC 163 (415)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~--i~~~~l~~~l~~h~~~~~-~~ti~~ 163 (415)
+.++...+. ...|++ .+..+...+. .+.|++++||. +...++.++++.|.+.+. ++++++
T Consensus 64 ---~~v~~~~~~-------~~~g~~-~~~~a~~~~~------~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~ 126 (238)
T PRK13368 64 ---GKVVMTSDD-------HLSGTD-RLAEVMLKIE------ADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLC 126 (238)
T ss_pred ---CeEEecCcc-------CCCccH-HHHHHHHhCC------CCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEE
Confidence 112111111 123666 4555655542 47899999997 445668999998876543 555566
Q ss_pred EEcCCC----cCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhh
Q 014953 164 LPMDDS----RASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRW 239 (415)
Q Consensus 164 ~~~~~~----~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~ 239 (415)
.+.+.. ++..+++ ..+++|+++.+.++|..... +. ...+.+.++|+|+|++++|..+ +.
T Consensus 127 ~~~~~~~~~~~p~~~~~-~~~~~g~v~~~~~~~~~~~~--------------~~-~~~~~~~n~giy~~~~~~l~~~-~~ 189 (238)
T PRK13368 127 APISTEEEFESPNVVKV-VVDKNGDALYFSRSPIPSRR--------------DG-ESARYLKHVGIYAFRRDVLQQF-SQ 189 (238)
T ss_pred EEcCCHHHhcCcCCCEE-EECCCCCEEEeeCCCCCCCC--------------CC-CCCceeEEEEEEEeCHHHHHHH-Hc
Confidence 554431 1334444 44567899999876532110 00 0013578999999999999753 32
Q ss_pred hCCCC-Ccccc-cchhhhc-ccceEEEEEeCceEEecCCHHHHHHHHHh
Q 014953 240 RFPTA-NDFGS-EIIPASA-NEQFLKAYLFNDYWEDIGTIRSFFEANLA 285 (415)
Q Consensus 240 ~~~~~-~~~~~-~~l~~l~-~~~~i~~~~~~g~~~di~t~~~y~~an~~ 285 (415)
..... ..+.. +++ .++ .+.+++++..+++|.||++|+||..|+..
T Consensus 190 ~~~~~~~~~~~~~~~-~~~~~g~~v~~~~~~~~~~DI~t~~Dl~~a~~~ 237 (238)
T PRK13368 190 LPETPLEQIESLEQL-RALEHGEKIRMVEVAATSIGVDTPEDLERVRAI 237 (238)
T ss_pred CCCChhhhhhhHHHH-HHHHCCCceEEEEeCCCCCCCCCHHHHHHHHHh
Confidence 11111 11222 444 444 55679999999999999999999999763
|
|
| >PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-20 Score=185.18 Aligned_cols=243 Identities=19% Similarity=0.296 Sum_probs=158.7
Q ss_pred ceEEEEEcCCCCCcccccccC-CcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhH-HHHHHHhhccCCCCccc
Q 014953 8 TVAAVILGGGAGTRLYPLTKQ-RAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSAS-LNRHLARAYNYGSGVTF 85 (415)
Q Consensus 8 ~~~aVILAaG~g~Rl~plt~~-~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~-i~~~l~~~~~~~~~~~~ 85 (415)
+|.+||||||.||||+|+|.. .||+|+|++|..|||+++++++...++.+.+++++..+.. +.+.+. .. .. .
T Consensus 5 ~~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~~~~~~iivt~~~~~~~v~~ql~-~~--~~---~ 78 (478)
T PRK15460 5 KLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVECESPVVICNEQHRFIVAEQLR-QL--NK---L 78 (478)
T ss_pred ceEEEEECCCCccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhCCCCCcEEEeCHHHHHHHHHHHH-hc--CC---c
Confidence 379999999999999999998 7999999966339999999999988888887888876643 333442 21 10 0
Q ss_pred CCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC--hHHHHHHHH---HcCCcEE
Q 014953 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD--YMDFVQNHR---QSGADIT 160 (415)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~--l~~~l~~h~---~~~~~~t 160 (415)
. ..++-.. ..++|+.++..+..++.......+.-++|+++|+++... |.+.++... +.+..+|
T Consensus 79 -~--~~ii~EP---------~~rnTApaialaa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lvt 146 (478)
T PRK15460 79 -T--ENIILEP---------AGRNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVT 146 (478)
T ss_pred -c--ccEEecC---------CCCChHHHHHHHHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 0 0122111 125899888777666643100013468899999966543 544444332 3466666
Q ss_pred EEEEEcCCCcCCcccEEEECCC---------CCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHH
Q 014953 161 ISCLPMDDSRASDFGLMKINNE---------GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKE 231 (415)
Q Consensus 161 i~~~~~~~~~~~~~g~v~~d~~---------~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~ 231 (415)
+...+... ...||++..++. .+|.+|.|||+......+.- ...++||+|+|+|+.+
T Consensus 147 ~GI~Pt~P--eTgyGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~yl~-------------~G~y~WNsGiF~~~a~ 211 (478)
T PRK15460 147 FGIVPDLP--ETGYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETAQAYVA-------------SGEYYWNSGMFLFRAG 211 (478)
T ss_pred EecCCCCC--CCCCCeEEeCCccccccccCceEeeEEEeCCCHHHHHHHHH-------------cCCEEEecceeheeHH
Confidence 66655443 467999987642 26999999999866433221 1247999999999998
Q ss_pred HHHHHHhhhCCC--------------CCcc---cccchhhh---------c-ccceEEEEEeCceEEecCCHHHHHHHH
Q 014953 232 ILLNLLRWRFPT--------------ANDF---GSEIIPAS---------A-NEQFLKAYLFNDYWEDIGTIRSFFEAN 283 (415)
Q Consensus 232 ~l~~~l~~~~~~--------------~~~~---~~~~l~~l---------~-~~~~i~~~~~~g~~~di~t~~~y~~an 283 (415)
.+...+++..++ ...+ ..+.++.+ + +..++.+.+.+--|.|+|++.++.+..
T Consensus 212 ~~l~~~~~~~P~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iSiDyavmEk~~~v~vvp~~f~WsDvGsW~sl~~~~ 290 (478)
T PRK15460 212 RYLEELKKYRPDILDACEKAMSAVDPDLDFIRVDEEAFLACPEESVDYAVMERTADAVVVPMDAGWSDVGSWSSLWEIS 290 (478)
T ss_pred HHHHHHHHHCHHHHHHHHHHHHhccCcccceeeCHHHHhhCcCcchhhhhhcccCceEEEecCCCccccCCHHHHHHhh
Confidence 776666543221 0000 01111111 1 124688888888899999999998864
|
|
| >COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-19 Score=150.09 Aligned_cols=220 Identities=14% Similarity=0.201 Sum_probs=145.7
Q ss_pred eEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCc
Q 014953 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (415)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (415)
|+|||||||.||||.|||...||+|+.|.|+ |||+++++.|.++||++|+||+||.+++. +|+++.+.
T Consensus 1 ~nAIIlAAG~gsR~~plT~~tpK~LlkV~g~-plIErqI~~L~e~gI~dI~IVvGYlkE~F-eYLkdKy~---------- 68 (231)
T COG4750 1 MNAIILAAGLGSRFVPLTQSTPKSLLKVNGE-PLIERQIEQLREAGIDDITIVVGYLKEQF-EYLKDKYD---------- 68 (231)
T ss_pred CceEEEecccccccccccccCChHHHHhcCc-ccHHHHHHHHHHCCCceEEEEeeehHHHH-HHHHHhcC----------
Confidence 6899999999999999999999999999999 99999999999999999999999999886 78876541
Q ss_pred eEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEEEcCC
Q 014953 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDD 168 (415)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~~~~~ 168 (415)
+.++....-. -....-++..|+++++ +.-++.+|.....++ ++.+...-.-.....+.
T Consensus 69 -vtLvyN~kY~-------~yNn~ySlyla~d~l~--------ntYiidsDnyl~kNi------f~~~~~~S~Yfav~~~~ 126 (231)
T COG4750 69 -VTLVYNPKYR-------EYNNIYSLYLARDFLN--------NTYIIDSDNYLTKNI------FLTKESHSKYFAVYRSG 126 (231)
T ss_pred -eEEEeCchHH-------hhhhHHHHHHHHHHhc--------ccEEeccchHhhhhh------hhcCcccceEEEEEecC
Confidence 3333321110 1356788999999885 466789998665542 11111111222222221
Q ss_pred CcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHH---HHHhhhCC--C
Q 014953 169 SRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILL---NLLRWRFP--T 243 (415)
Q Consensus 169 ~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~---~~l~~~~~--~ 243 (415)
..+--++..+.+|+|+++.---. .....+|+..|+...-. .+++...- +
T Consensus 127 --~tnEw~l~~~~~~ki~~v~Igg~------------------------~~~imsG~sff~~~~~~ki~~ll~~~yv~~e 180 (231)
T COG4750 127 --KTNEWLLIYNSDGKITRVDIGGL------------------------NGYIMSGISFFDAQFSNKIKKLLKEYYVRLE 180 (231)
T ss_pred --CCceeEEEEcCCCcEEEEEecCc------------------------ccceEeeeeeecchhHHHHHHHHHHHHhCch
Confidence 12223456678899998863222 23567899999876433 34443211 1
Q ss_pred -CCcccccchhhhcccceEEEEEeC-ceEEecCCHHHHHHHHHhhcC
Q 014953 244 -ANDFGSEIIPASANEQFLKAYLFN-DYWEDIGTIRSFFEANLALTA 288 (415)
Q Consensus 244 -~~~~~~~~l~~l~~~~~i~~~~~~-g~~~di~t~~~y~~an~~~l~ 288 (415)
..-+..++.-+-++...+++-..+ +--++++++++|......++.
T Consensus 181 ~~k~yWd~v~~~ni~~l~m~iek~~~n~IyE~DsLdelrk~~~~~l~ 227 (231)
T COG4750 181 NRKLYWDTVPMENIKELDMYIEKLNDNDIYEFDSLDELRKFEQKFLS 227 (231)
T ss_pred hhhHHHHHHHHHHHHHHhHhHHhhcCCceEEeccHHHHHhhhhhhcC
Confidence 122334444444555555555544 346789999999888776543
|
|
| >COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.8e-19 Score=157.83 Aligned_cols=242 Identities=21% Similarity=0.332 Sum_probs=160.0
Q ss_pred ceEEEEEcCCCCCccccccc-CCcccceeeCC-cceeehhehhhhhc-cCCcEEEEEcccChh-HHHHHHHhhccCCCCc
Q 014953 8 TVAAVILGGGAGTRLYPLTK-QRAKPAVPIGG-AYRLIDVPMSNCIN-SGINKVYILTQYNSA-SLNRHLARAYNYGSGV 83 (415)
Q Consensus 8 ~~~aVILAaG~g~Rl~plt~-~~pK~llpv~g-~~pli~~~l~~l~~-~gi~~I~vv~~~~~~-~i~~~l~~~~~~~~~~ 83 (415)
+|++||||||.||||+||+. .+||+++++.+ + .|++.+++++.. .+.++++++|+..+. .+.+.+.+ ...++
T Consensus 1 ~~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~-Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e-~~~~~-- 76 (333)
T COG0836 1 MMIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDL-SLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPE-IDIEN-- 76 (333)
T ss_pred CceeEEEeCCCccccCCcCcccCCccceeeCCCC-cHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhh-hhhcc--
Confidence 47899999999999999976 59999999966 6 999999999988 678999999997764 33333332 10010
Q ss_pred ccCCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC--hHHHHHHH---HHcCCc
Q 014953 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD--YMDFVQNH---RQSGAD 158 (415)
Q Consensus 84 ~~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~--l~~~l~~h---~~~~~~ 158 (415)
.. . -++.+.. +.|+.|+..+.-.+... .++.-++|+++|+++... |.+.++.. .+++..
T Consensus 77 -~~-~--illEP~g----------RnTApAIA~aa~~~~~~--~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~l 140 (333)
T COG0836 77 -AA-G--IILEPEG----------RNTAPAIALAALSATAE--GGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGI 140 (333)
T ss_pred -cc-c--eEeccCC----------CCcHHHHHHHHHHHHHh--CCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCE
Confidence 11 1 1221211 47898887776555431 123459999999966543 55555433 345666
Q ss_pred EEEEEEEcCCCcCCcccEEEECCC------CCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHH
Q 014953 159 ITISCLPMDDSRASDFGLMKINNE------GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEI 232 (415)
Q Consensus 159 ~ti~~~~~~~~~~~~~g~v~~d~~------~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~ 232 (415)
+|+...+... ...||.+...+. -+|.+|.|||+........- .-.+++++|+|+|+...
T Consensus 141 VTfGI~Pt~P--eTGYGYIe~G~~~~~~~~~~V~~FvEKPd~etA~~yv~-------------sG~y~WNSGmF~Fra~~ 205 (333)
T COG0836 141 VTFGIPPTRP--ETGYGYIETGESIAENGVYKVDRFVEKPDLETAKKYVE-------------SGEYLWNSGMFLFRASV 205 (333)
T ss_pred EEEecCCCCC--ccCcceeecCcccccCCceEeeeeeeCCCHHHHHHHHH-------------cCceEeeccceEEEHHH
Confidence 6666655443 467999987441 26999999999876432221 12389999999999987
Q ss_pred HHHHHhhhCCC-----------CCccc-----ccc--------hhhhc--ccceEEEEEeCceEEecCCHHHHHHHHH
Q 014953 233 LLNLLRWRFPT-----------ANDFG-----SEI--------IPASA--NEQFLKAYLFNDYWEDIGTIRSFFEANL 284 (415)
Q Consensus 233 l~~~l~~~~~~-----------~~~~~-----~~~--------l~~l~--~~~~i~~~~~~g~~~di~t~~~y~~an~ 284 (415)
+...+++..|+ ..++. .+. +.+.+ +..++.+.+.+-.|.|+|++..+.+...
T Consensus 206 ~l~e~~~~~P~i~~~~~~~~~~~~d~~~~~l~~e~f~~~p~iSIDYAiMEkt~~~aVVp~~f~WsDlGsW~Al~~~~~ 283 (333)
T COG0836 206 FLEELKKHQPDIYCAAEKAFEAAVDENSVRLDNEAYEEIPAISIDYAIMEKTSKAAVVPADFGWSDLGSWHALWEVLD 283 (333)
T ss_pred HHHHHHhhCcHHHHHHHHHHhcccccchhcccHHHHhhCcccchhHHHHhhhcceEEEecCCCcccccCHHHHHHHhh
Confidence 76666543332 00000 000 11111 2367888899889999999999988744
|
|
| >PLN02917 CMP-KDO synthetase | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.9e-18 Score=158.29 Aligned_cols=237 Identities=16% Similarity=0.172 Sum_probs=151.4
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCccc
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (415)
.+++.|||||+|.++||. +|+|+|++|+ |||+|+++.+.+++..+.++| +++.+++.+++.+.
T Consensus 45 ~~~i~aIIpA~G~SsR~~------~K~L~~i~Gk-PLL~~vi~~a~~~~~~~~VVV-~~~~e~I~~~~~~~--------- 107 (293)
T PLN02917 45 RSRVVGIIPARFASSRFE------GKPLVHILGK-PMIQRTWERAKLATTLDHIVV-ATDDERIAECCRGF--------- 107 (293)
T ss_pred CCcEEEEEecCCCCCCCC------CCCeeeECCE-EHHHHHHHHHHcCCCCCEEEE-ECChHHHHHHHHHc---------
Confidence 356789999999999993 6999999999 999999999998765444333 45667777766421
Q ss_pred CCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-eccc-ChHHHHHHHHHcCCcEEE--
Q 014953 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRM-DYMDFVQNHRQSGADITI-- 161 (415)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~-~l~~~l~~h~~~~~~~ti-- 161 (415)
+ ++++...+.. ..||+++ ..+++.++. ..+.+++++||. +... .+..+++.+.+. .++++
T Consensus 108 ~---v~vi~~~~~~-------~~GT~~~-~~a~~~l~~----~~d~Vlil~gD~PlI~~~tI~~li~~~~~~-~~~iv~t 171 (293)
T PLN02917 108 G---ADVIMTSESC-------RNGTERC-NEALKKLEK----KYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFST 171 (293)
T ss_pred C---CEEEeCCccc-------CCchHHH-HHHHHhccC----CCCEEEEecCCcCCCCHHHHHHHHHHHHhc-CCceEEE
Confidence 1 1222111111 2477766 567776642 147899999999 4554 488999987654 33333
Q ss_pred EEEEcCCCcCCcccEEE--ECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhh
Q 014953 162 SCLPMDDSRASDFGLMK--INNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRW 239 (415)
Q Consensus 162 ~~~~~~~~~~~~~g~v~--~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~ 239 (415)
++.....+++.+||.+. .|++|++..|...+-.+.... .+++ ....+.++|+|.|+.+.|. .+..
T Consensus 172 ~~~~~~~~~~~~ygrv~vv~~~~g~alyfsr~~Ipe~kd~----------~~~~--~~i~~~n~Giy~f~~~~L~-~l~~ 238 (293)
T PLN02917 172 AVTSLKPEDASDPNRVKCVVDNQGYAIYFSRGLIPYNKSG----------KVNP--QFPYLLHLGIQSYDAKFLK-IYPE 238 (293)
T ss_pred EeeecCHHHhcCCCceEEEECCCCeEEEeecCcCCcCCCc----------cccc--ccceEEEEEEEEeCHHHHH-HHHc
Confidence 22222223467888875 677888776654322111000 0111 1236789999999999997 4444
Q ss_pred hCCC---CCcccccchhhhcccceEEEEEeCceEEecCCHHHHHHHHHhhcCC
Q 014953 240 RFPT---ANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAH 289 (415)
Q Consensus 240 ~~~~---~~~~~~~~l~~l~~~~~i~~~~~~g~~~di~t~~~y~~an~~~l~~ 289 (415)
..++ ...+.+++. .+-.+.++.++..+....-|||++||.+|++.+.++
T Consensus 239 l~~~n~e~e~yLtdl~-~le~G~~i~~~~~~~~~~GVnt~~dL~~ae~~~~~~ 290 (293)
T PLN02917 239 LPPTPLQLEEDLEQLK-VLENGYKMKVIKVDHEAHGVDTPEDVEKIEALMRER 290 (293)
T ss_pred CCCCcccchhccHHHH-HHhCCCceEEEEeCCCCCCCCCHHHHHHHHHHHHHc
Confidence 3222 223333343 223456788888776677999999999999977543
|
|
| >TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.6e-16 Score=141.48 Aligned_cols=210 Identities=18% Similarity=0.194 Sum_probs=139.6
Q ss_pred EEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhcc-CCcEEEEEcccCh-hHHHHHHHhhccCCCCcccCCc
Q 014953 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNS-ASLNRHLARAYNYGSGVTFGDG 88 (415)
Q Consensus 11 aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~-gi~~I~vv~~~~~-~~i~~~l~~~~~~~~~~~~~~~ 88 (415)
|||||||.|+||+ ...||+|+|++|+ |||+|+++++.++ ++++++|++++.. +.+.+++... .
T Consensus 2 aiIlAaG~s~R~~---~~~~K~l~~l~gk-pll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~-----------~ 66 (217)
T TIGR00453 2 AVIPAAGRGTRFG---SGVPKQYLELGGR-PLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLVAR-----------A 66 (217)
T ss_pred EEEEcCcccccCC---CCCCccEeEECCe-EHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhhcC-----------C
Confidence 7999999999997 3579999999999 9999999999987 7999999998764 3343333210 0
Q ss_pred eEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHHHHHcCCcEEEEEEEc
Q 014953 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCLPM 166 (415)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~h~~~~~~~ti~~~~~ 166 (415)
.+.++.. . .+..++++.++..+++ .+.++++.||. +++.+ +..+++.+.+. +++++..+.
T Consensus 67 ~~~~~~~--~---------~~~~~sl~~~l~~~~~-----~d~vlv~~~D~P~i~~~~i~~li~~~~~~--~~~~~~~~~ 128 (217)
T TIGR00453 67 VPKIVAG--G---------DTRQDSVRNGLKALKD-----AEWVLVHDAARPFVPKELLDRLLEALRKA--GAAILALPV 128 (217)
T ss_pred cEEEeCC--C---------chHHHHHHHHHHhCCC-----CCEEEEccCccCCCCHHHHHHHHHHHhhC--CcEEEeEec
Confidence 1222211 1 1456888888877621 47899999999 55554 78888877654 334444444
Q ss_pred CCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCCc
Q 014953 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAND 246 (415)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~~~~ 246 (415)
.+ ++...|++|.+..+.++... ....+ .|.|+...|..++....... .
T Consensus 129 ~~------~v~~~~~~g~~~~~~~r~~~------------------------~~~~~-p~~f~~~~l~~~~~~~~~~~-~ 176 (217)
T TIGR00453 129 AD------TLKRVEADGFIVETVDREGL------------------------WAAQT-PQAFRTELLKKALARAKEEG-F 176 (217)
T ss_pred cc------eEEEEcCCCceeecCChHHe------------------------EEEeC-CCcccHHHHHHHHHHHHhcC-C
Confidence 32 34455666777777663211 23334 68999998887765432221 1
Q ss_pred ccccchhhhc-ccceEEEEEeCceEEecCCHHHHHHHHHh
Q 014953 247 FGSEIIPASA-NEQFLKAYLFNDYWEDIGTIRSFFEANLA 285 (415)
Q Consensus 247 ~~~~~l~~l~-~~~~i~~~~~~g~~~di~t~~~y~~an~~ 285 (415)
...|....+. .+.++..++.+....+|+|++||..|...
T Consensus 177 ~~~d~~~~~~~~g~~i~~~~~~~~~~~I~~~~Dl~~ae~~ 216 (217)
T TIGR00453 177 EITDDASAVEKLGGKVALVEGDALNFKITTPEDLALAEAL 216 (217)
T ss_pred CCCcHHHHHHHcCCCeEEEecCccccccCCHHHHHHHHHh
Confidence 1122222222 25678888877777899999999988753
|
Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein. |
| >PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.4e-16 Score=141.74 Aligned_cols=219 Identities=17% Similarity=0.195 Sum_probs=141.7
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccC-CcEEEEEcccCh-hHHHHHHHhhccCCCCc
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNS-ASLNRHLARAYNYGSGV 83 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~g-i~~I~vv~~~~~-~~i~~~l~~~~~~~~~~ 83 (415)
|+++.|||||||.|+||+ ...||+|+|++|+ |||+|+++++..++ +++|+|++++.. +.+.+.+...
T Consensus 1 ~~~~~~iILAaG~s~R~g---~~~~K~l~~~~g~-pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~~------- 69 (227)
T PRK00155 1 MMMVYAIIPAAGKGSRMG---ADRPKQYLPLGGK-PILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLLAK------- 69 (227)
T ss_pred CCceEEEEEcCccccccC---CCCCceeeEECCE-EHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhhcc-------
Confidence 467889999999999995 4589999999999 99999999999865 899999998765 3333322110
Q ss_pred ccCCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHHHHHcCCcEEE
Q 014953 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITI 161 (415)
Q Consensus 84 ~~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~h~~~~~~~ti 161 (415)
. ..+.++.. . .+.+++++.++..+.+ .+.++++.||. ++..+ +..+++.+.+.+ .++
T Consensus 70 -~--~~~~~~~~--~---------~~~~~sv~~~l~~~~~-----~d~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~ 128 (227)
T PRK00155 70 -D--PKVTVVAG--G---------AERQDSVLNGLQALPD-----DDWVLVHDAARPFLTPDDIDRLIEAAEETG--AAI 128 (227)
T ss_pred -C--CceEEeCC--c---------chHHHHHHHHHHhCCC-----CCEEEEccCccCCCCHHHHHHHHHHHhhCC--CEE
Confidence 0 01222211 0 2578999999887743 46899999999 45544 889999876654 334
Q ss_pred EEEEcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhC
Q 014953 162 SCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF 241 (415)
Q Consensus 162 ~~~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~ 241 (415)
++.+..+ .+. ..+++|.+.++.+ ... .... -+.+.|+.+.|..++....
T Consensus 129 ~~~~~~~----~~~--~v~~~g~~~~~~~---r~~---------------------~~~~-~~p~~f~~~~l~~~~~~~~ 177 (227)
T PRK00155 129 LAVPVKD----TIK--RSDDGGGIVDTPD---RSG---------------------LWAA-QTPQGFRIELLREALARAL 177 (227)
T ss_pred EEEeccc----cEE--EEcCCCceeecCC---hHH---------------------heee-eCCccchHHHHHHHHHHHH
Confidence 4444432 122 2244566655422 111 0122 2478999998887776532
Q ss_pred CCCCcccccchhhhc-ccceEEEEEeCceEEecCCHHHHHHHHHhhcC
Q 014953 242 PTANDFGSEIIPASA-NEQFLKAYLFNDYWEDIGTIRSFFEANLALTA 288 (415)
Q Consensus 242 ~~~~~~~~~~l~~l~-~~~~i~~~~~~g~~~di~t~~~y~~an~~~l~ 288 (415)
.. ..+..|....+. .+.++..+..+..+.+|+|++||..|+..+.+
T Consensus 178 ~~-~~~~~d~~~~~~~~~~~i~~~~~~~~~~~Idt~~Dl~~ae~~~~~ 224 (227)
T PRK00155 178 AE-GKTITDDASAVERLGKPVRLVEGRYDNIKITTPEDLALAEAILKR 224 (227)
T ss_pred hc-CCCcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHHHHHHHHHh
Confidence 21 112222222211 24567777767678899999999999876543
|
|
| >TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.4e-15 Score=134.94 Aligned_cols=229 Identities=16% Similarity=0.207 Sum_probs=141.9
Q ss_pred EEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCceE
Q 014953 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (415)
Q Consensus 11 aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 90 (415)
+||+|+|.|+|| .+|+|++++|+ |||.|+++++.++++++|+|++.. +.+.+++.+ ++ +
T Consensus 2 ~iIpA~g~s~R~------~~K~L~~l~Gk-Pli~~~le~~~~~~~d~VvVvt~~--~~i~~~~~~---------~g---~ 60 (238)
T TIGR00466 2 VIIPARLASSRL------PGKPLEDIFGK-PMIVHVAENANESGADRCIVATDD--ESVAQTCQK---------FG---I 60 (238)
T ss_pred EEEecCCCCCCC------CCCeecccCCc-CHHHHHHHHHHhCCCCeEEEEeCH--HHHHHHHHH---------cC---C
Confidence 799999999999 38999999999 999999999998889999998853 445555432 11 1
Q ss_pred EEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHHHHHcCCcEEEEEEEcCC
Q 014953 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCLPMDD 168 (415)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~h~~~~~~~ti~~~~~~~ 168 (415)
.++...+. ...|+. .+..+...+.. ...+.++++.||. +...+ +.++++.+.+.+++++.+..+..+
T Consensus 61 ~~v~~~~~-------~~~Gt~-r~~~~~~~l~~---~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d 129 (238)
T TIGR00466 61 EVCMTSKH-------HNSGTE-RLAEVVEKLAL---KDDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIHD 129 (238)
T ss_pred EEEEeCCC-------CCChhH-HHHHHHHHhCC---CCCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecCC
Confidence 11111111 012433 33334333321 0146789999999 55554 788888876656677777777654
Q ss_pred Cc---CCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCC
Q 014953 169 SR---ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAN 245 (415)
Q Consensus 169 ~~---~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~~~ 245 (415)
.. ..+...+..|.+|+..-|.+.+-+.... .......|+ ...++...|+|.|++++|..+........+
T Consensus 130 ~~~~~~p~~vk~v~~~~g~alyfsr~~ip~~R~-----~~~~~~tpq---~~~~~~h~Giy~~~~~~L~~~~~~~~~~le 201 (238)
T TIGR00466 130 AEEAFNPNAVKVVLDSQGYALYFSRSLIPFDRD-----FFAKRQTPV---GDNLLRHIGIYGYRAGFIEEYVAWKPCVLE 201 (238)
T ss_pred HHHccCCCceEEEeCCCCeEEEecCCCCCCCCC-----ccccccccc---ccceeEEEEEEeCCHHHHHHHHhCCCCccc
Confidence 11 1223344456678776676543321100 000001111 112567899999999999877543211111
Q ss_pred ccc-ccchhhhcccceEEEEEeCce-EEecCCHHHH
Q 014953 246 DFG-SEIIPASANEQFLKAYLFNDY-WEDIGTIRSF 279 (415)
Q Consensus 246 ~~~-~~~l~~l~~~~~i~~~~~~g~-~~di~t~~~y 279 (415)
..+ -+.|..+-.+.+|.+...+.. -..|+||+|+
T Consensus 202 ~~e~leqlr~le~g~~i~~~~~~~~~~~~vdt~~d~ 237 (238)
T TIGR00466 202 EIEKLEQLRVLYYGEKIHVKIAQEVPSVGVDTQEDL 237 (238)
T ss_pred ccchhHHHhhhhcCCceEEEEeCCCCCCCCCChHHc
Confidence 111 245666777889999988766 4699999997
|
|
| >PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.8e-15 Score=143.08 Aligned_cols=209 Identities=14% Similarity=0.143 Sum_probs=139.3
Q ss_pred cccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccC-CcEEEEEcccChhHHHHHHHhhccCCCCc
Q 014953 5 DARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGV 83 (415)
Q Consensus 5 ~~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~g-i~~I~vv~~~~~~~i~~~l~~~~~~~~~~ 83 (415)
.|+++.|||||||.|+||. ...||+|+|++|+ |||+|+++.+.+.+ +++|+|++++....+.+.+...
T Consensus 2 ~mm~v~aIILAAG~GsRmg---~~~pKqll~l~Gk-Pll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~~~------- 70 (378)
T PRK09382 2 LMSDISLVIVAAGRSTRFS---AEVKKQWLRIGGK-PLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKALPE------- 70 (378)
T ss_pred CCCcceEEEECCCCCccCC---CCCCeeEEEECCe-eHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhccc-------
Confidence 3577899999999999994 4689999999999 99999999999987 7999999987765444332211
Q ss_pred ccCCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHHHHHcCCcEEE
Q 014953 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITI 161 (415)
Q Consensus 84 ~~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~h~~~~~~~ti 161 (415)
+ ..+.++. .. .+..++++.++..++ .+.+++..||. +++.+ +..+++...+. +.++
T Consensus 71 -~--~~v~~v~--gG---------~~r~~SV~~gL~~l~------~d~VLVhdadrPfv~~e~I~~li~~~~~~--~a~i 128 (378)
T PRK09382 71 -I--KFVTLVT--GG---------ATRQESVRNALEALD------SEYVLIHDAARPFVPKELIDRLIEALDKA--DCVL 128 (378)
T ss_pred -C--CeEEEeC--CC---------chHHHHHHHHHHhcC------CCeEEEeeccccCCCHHHHHHHHHHhhcC--CeEE
Confidence 1 0122221 11 257889999988774 37899999998 55554 67777765543 5677
Q ss_pred EEEEcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhC
Q 014953 162 SCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF 241 (415)
Q Consensus 162 ~~~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~ 241 (415)
...+..+ +..|+...+|. .++..+ +.|.... .+.+....+
T Consensus 129 ~~~pv~D--tik~~~~tldR-~~l~~~-QTPQ~f~---------------------------------~~~l~~a~~--- 168 (378)
T PRK09382 129 PALPVAD--TLKRANETVDR-EGLKLI-QTPQLSR---------------------------------TKTLKAAAD--- 168 (378)
T ss_pred EEEEecc--CcEEeeeEcCc-ccEEEE-ECCCCCC---------------------------------HHHHHHHHh---
Confidence 7777766 44565444543 345444 5554322 111211111
Q ss_pred CCCCcccccchhhhc-ccceEEEEEeCceEEecCCHHHHHHHHHhhcC
Q 014953 242 PTANDFGSEIIPASA-NEQFLKAYLFNDYWEDIGTIRSFFEANLALTA 288 (415)
Q Consensus 242 ~~~~~~~~~~l~~l~-~~~~i~~~~~~g~~~di~t~~~y~~an~~~l~ 288 (415)
.... ..|..+.+. .+.+|..++-++.|.+|++|+||..|+..+..
T Consensus 169 -~~~~-~TDd~sl~~~~G~~V~~v~g~~~n~KITtpeDL~~A~~~l~~ 214 (378)
T PRK09382 169 -GRGD-FTDDSSAAEAAGGKVALVEGSEDLHKLTYKEDLKMADLLLSP 214 (378)
T ss_pred -CCCC-cccHHHHHHHcCCcEEEEECCCcccCCCCHHHHHHHHHHhcc
Confidence 1111 234444333 35689999999999999999999999986644
|
|
| >cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.4e-15 Score=135.38 Aligned_cols=212 Identities=17% Similarity=0.248 Sum_probs=139.0
Q ss_pred EEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccC-CcEEEEEcccChhHHHHHHHhhccCCCCcccCCc
Q 014953 10 AAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (415)
Q Consensus 10 ~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~g-i~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (415)
.|||||||.|+||++ ..||+|+|++|+ |||+|+++++...+ +++|+|++++......+.+.. +... .
T Consensus 2 ~~vILAaG~s~R~~~---~~~K~l~~i~Gk-pll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~-~~~~-------~ 69 (218)
T cd02516 2 AAIILAAGSGSRMGA---DIPKQFLELGGK-PVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELAK-YGLS-------K 69 (218)
T ss_pred EEEEECCcccccCCC---CCCcceeEECCe-EHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHHHh-cccC-------C
Confidence 589999999999974 379999999999 99999999999876 899999998776554443311 1010 0
Q ss_pred eEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHHHHHcCCcEEEEEEEc
Q 014953 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCLPM 166 (415)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~h~~~~~~~ti~~~~~ 166 (415)
.+.++... .+...+++.++..++. ...+.++++.||+ +++.+ +..+++.+.+.++ .+...+.
T Consensus 70 ~~~~~~~~-----------~~~~~si~~al~~~~~---~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~~--~~~~~~~ 133 (218)
T cd02516 70 VVKIVEGG-----------ATRQDSVLNGLKALPD---ADPDIVLIHDAARPFVSPELIDRLIDALKEYGA--AIPAVPV 133 (218)
T ss_pred CeEEECCc-----------hHHHHHHHHHHHhccc---CCCCEEEEccCcCCCCCHHHHHHHHHHHhhCCc--EEEEEec
Confidence 12332211 2567889999887741 0157899999998 55554 7889998865543 3333333
Q ss_pred CCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCCc
Q 014953 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAND 246 (415)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~~~~ 246 (415)
.+ ++...|++|.+..+.+..+. ..+.++ ++|+.+.|..++...... ..
T Consensus 134 ~~------~~~~~~~~g~~~~~~~r~~~------------------------~~~~~P-~~f~~~~~~~~~~~~~~~-~~ 181 (218)
T cd02516 134 TD------TIKRVDDDGVVVETLDREKL------------------------WAAQTP-QAFRLDLLLKAHRQASEE-GE 181 (218)
T ss_pred cc------cEEEecCCCceeecCChHHh------------------------hhhcCC-CcccHHHHHHHHHHHHhc-CC
Confidence 22 12335667888887763221 345567 899999998887654322 11
Q ss_pred ccccchhhhcc-cceEEEEEeCceEEecCCHHHHHH
Q 014953 247 FGSEIIPASAN-EQFLKAYLFNDYWEDIGTIRSFFE 281 (415)
Q Consensus 247 ~~~~~l~~l~~-~~~i~~~~~~g~~~di~t~~~y~~ 281 (415)
+..|...-+.+ +.++..++.+..-.||+||+||..
T Consensus 182 ~~td~~~~~~~~~~~v~~v~~~~~~~~i~t~~dl~~ 217 (218)
T cd02516 182 EFTDDASLVEAAGGKVALVEGSEDNIKITTPEDLAL 217 (218)
T ss_pred CcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHhh
Confidence 22232222222 346777776666669999999964
|
4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs. |
| >TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.4e-16 Score=141.46 Aligned_cols=147 Identities=18% Similarity=0.178 Sum_probs=91.2
Q ss_pred ccchhhhcccceEEEEEeCceEEecCCHHHHHHHHHhhcCCCCC-----------CCccCCCCCccccCccCCCeeecCC
Q 014953 249 SEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPM-----------FSFYDATKPIYTSRRNLPPSKIDDS 317 (415)
Q Consensus 249 ~~~l~~l~~~~~i~~~~~~g~~~di~t~~~y~~an~~~l~~~~~-----------~~~~~~~~~~~~~~~i~~~~~i~~~ 317 (415)
.|.++.+++.+ ++..+|||.|+ ++|++||+++|..... ..++..+..+.+.+.+.+
T Consensus 31 ~~~~~~~~~~~---~~~~~gyW~Di---~~yl~an~diL~~~~~~~~~~~~~~~~~~~vg~~~~I~~~a~I~g------- 97 (231)
T TIGR03532 31 PESIKKFGSGH---SGVLFGEWEDI---EPFIEANKDKIKDYRIENDRRNSAIPLLDLKNINARIEPGAIIRD------- 97 (231)
T ss_pred chheEEEecCC---cEEEEEeHHHH---HHHHHHhHhhhcceEEeecccccccccccccccccEECCCCEEeC-------
Confidence 57888888766 88899999999 9999999999976421 001112222222222222
Q ss_pred ccccceECCCCEEc-ceEEe-eeEEccCcEECCCcEEe-ecEEeCCccccchhHHH----------hhhhCCCcceEeCC
Q 014953 318 KIVDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLK-DTMMLGADFYETDAEVA----------SLLAEGRVPVGIGE 384 (415)
Q Consensus 318 ~i~~~~ig~~~~I~-~~~i~-~svig~~~~ig~~~~i~-~sii~~~~~~~~~~~~~----------~~~~~~~~~~~Ig~ 384 (415)
++.||++|+|+ ++.|. +++||++|.|++++.|. +++|+++++|+.++.+. ..++++ |.||.
T Consensus 98 ---~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~---v~IG~ 171 (231)
T TIGR03532 98 ---QVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDN---VLIGA 171 (231)
T ss_pred ---CeEECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCC---cEECC
Confidence 23344444443 23332 34445555554444443 44445554444444442 234444 89999
Q ss_pred CCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 385 NTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 385 ~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
++.|. +|.|++++.|++++.+.+.+.+++.
T Consensus 172 gsvI~~g~~Ig~~~~IgagsvV~~di~~~~v 202 (231)
T TIGR03532 172 NAVILEGVRVGKGAVVAAGAIVTEDVPPNTV 202 (231)
T ss_pred CCEEcCCCEECCCCEECCCCEEccccCCCcE
Confidence 99996 9999999999999998888877764
|
Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate. |
| >TIGR00454 conserved hypothetical protein TIGR00454 | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.7e-16 Score=134.15 Aligned_cols=125 Identities=23% Similarity=0.254 Sum_probs=95.2
Q ss_pred eEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCc
Q 014953 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (415)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (415)
|.|||||||+|+||++ .||+|+|++|+ |||+|+++++..+++++|+++++++.+.+..++....
T Consensus 1 m~aIILAgG~gsRmg~----~~K~Ll~i~Gk-plI~~vi~~l~~~~i~~I~Vv~~~~~~~~~~~l~~~~----------- 64 (183)
T TIGR00454 1 MDALIMAGGKGTRLGG----VEKPLIEVCGR-CLIDHVLSPLLKSKVNNIIIATSPHTPKTEEYINSAY----------- 64 (183)
T ss_pred CeEEEECCccCccCCC----CCceEeEECCE-EHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhcC-----------
Confidence 6899999999999975 79999999999 9999999999988999999999988778877775321
Q ss_pred eEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCee--cccChHHHHHHHHHcCCcEEEEEEE
Q 014953 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHL--YRMDYMDFVQNHRQSGADITISCLP 165 (415)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i--~~~~l~~~l~~h~~~~~~~ti~~~~ 165 (415)
..+.. .. -.|...++..++..+.. .++|++++||+. ....+..+++.+...+.....++.+
T Consensus 65 -~~~~~-~~---------g~G~~~~l~~al~~~~~-----~~~~lv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~ 127 (183)
T TIGR00454 65 -KDYKN-AS---------GKGYIEDLNECIGELYF-----SEPFLVVSSDLINLRSKIIDSIVDYYYCIKAPALAVMIP 127 (183)
T ss_pred -cEEEe-cC---------CCCHHHHHHHHhhcccC-----CCCEEEEeCCcCcCCHHHHHHHHHHHHhcCCCceEEEec
Confidence 11211 11 14778888888765432 478999999993 3455889999887765555444444
|
At this time this gene appears to be present only in Archea |
| >PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-15 Score=130.17 Aligned_cols=121 Identities=25% Similarity=0.380 Sum_probs=92.7
Q ss_pred EEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCceE
Q 014953 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (415)
Q Consensus 11 aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 90 (415)
|||||||.|+||+ .||+|+|++|+ |||+|+++.+.+.++++|+|++++ +++.+++... + +
T Consensus 1 ~vILa~G~s~Rmg-----~~K~l~~i~g~-~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~~~---------~---~ 60 (160)
T PF12804_consen 1 AVILAAGKSSRMG-----GPKALLPIGGK-PLIERVLEALREAGVDDIVVVTGE--EEIYEYLERY---------G---I 60 (160)
T ss_dssp EEEEESSSCGGGT-----SCGGGSEETTE-EHHHHHHHHHHHHTESEEEEEEST--HHHHHHHTTT---------T---S
T ss_pred CEEECCcCcccCC-----CCccceeECCc-cHHHHHHHHhhccCCceEEEecCh--HHHHHHHhcc---------C---c
Confidence 7999999999997 59999999999 999999999999999999999987 4455544221 1 2
Q ss_pred EEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCee-cccC-hHHHHHHHHHcCCcEEEEEE
Q 014953 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHL-YRMD-YMDFVQNHRQSGADITISCL 164 (415)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i-~~~~-l~~~l~~h~~~~~~~ti~~~ 164 (415)
+++..... ..|++++++.++..+.. .++|++++||+. .+.+ +..+++.+.+.++++++...
T Consensus 61 ~~v~~~~~--------~~G~~~sl~~a~~~~~~-----~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~~ 123 (160)
T PF12804_consen 61 KVVVDPEP--------GQGPLASLLAALSQLPS-----SEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVPVF 123 (160)
T ss_dssp EEEE-STS--------SCSHHHHHHHHHHTSTT-----SSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEEE
T ss_pred eEEEeccc--------cCChHHHHHHHHHhccc-----CCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEEEE
Confidence 33322211 15999999999988732 689999999994 3544 78999988877776665543
|
... |
| >cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-14 Score=130.79 Aligned_cols=218 Identities=18% Similarity=0.202 Sum_probs=136.7
Q ss_pred ceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccC-CcEEEEEcccChhHHHHHHHhhccCCCCcccC
Q 014953 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (415)
Q Consensus 8 ~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~g-i~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (415)
++.|||||+|.|+||. +|+|+|++|+ |||+|+++.+.+++ +++|+|++. .+.+.+++.+. +
T Consensus 1 ~~~~iIlA~G~s~R~~------~K~l~~l~Gk-pll~~~l~~l~~~~~~~~IvV~~~--~~~i~~~~~~~---~------ 62 (223)
T cd02513 1 KILAIIPARGGSKGIP------GKNIRPLGGK-PLIAWTIEAALESKLFDRVVVSTD--DEEIAEVARKY---G------ 62 (223)
T ss_pred CeEEEEecCCCCCCCC------CcccchhCCc-cHHHHHHHHHHhCCCCCEEEEECC--cHHHHHHHHHh---C------
Confidence 4679999999999993 5999999999 99999999999887 788887763 34455554321 1
Q ss_pred CceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe--ecccChHHHHHHHHHcCCcEEEEEE
Q 014953 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGADITISCL 164 (415)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~--i~~~~l~~~l~~h~~~~~~~ti~~~ 164 (415)
.. +.+....... ....|+.++++.++.+++... ...+.++++.||. +...++.++++.+...+++.++.+.
T Consensus 63 ~~-~~~~~~~~~~-----~~~~~~~~~i~~~l~~l~~~~-~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~ 135 (223)
T cd02513 63 AE-VPFLRPAELA-----TDTASSIDVILHALDQLEELG-RDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVT 135 (223)
T ss_pred CC-ceeeCChHHC-----CCCCCcHHHHHHHHHHHHHhC-CCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 00 1111111100 001488999999988774210 0136899999999 3344589999998887778777777
Q ss_pred EcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCC
Q 014953 165 PMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA 244 (415)
Q Consensus 165 ~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~~ 244 (415)
+..+ ..-++... +++| ...+...+.... . .++ ....+..++|+|+++++.+... .
T Consensus 136 ~~~~--~~~~~~~~-~~~~-~~~~~~~~~~~~-~------------~q~-~~~~~~~n~~~y~~~~~~~~~~-------~ 190 (223)
T cd02513 136 EFHR--FPWRALGL-DDNG-LEPVNYPEDKRT-R------------RQD-LPPAYHENGAIYIAKREALLES-------N 190 (223)
T ss_pred ecCc--CcHHheee-ccCC-ceeccCcccccC-C------------cCC-ChhHeeECCEEEEEEHHHHHhc-------C
Confidence 6554 22233222 2222 222221111000 0 000 0112567889999999877421 0
Q ss_pred CcccccchhhhcccceEEEEEeCc-eEEecCCHHHHHHHHHh
Q 014953 245 NDFGSEIIPASANEQFLKAYLFND-YWEDIGTIRSFFEANLA 285 (415)
Q Consensus 245 ~~~~~~~l~~l~~~~~i~~~~~~g-~~~di~t~~~y~~an~~ 285 (415)
.+ -++++..+..+. ...||++++|+..|...
T Consensus 191 -~~---------~g~~~~~~~~~~~~~~dI~~~~D~~~ae~~ 222 (223)
T cd02513 191 -SF---------FGGKTGPYEMPRERSIDIDTEEDFELAEAL 222 (223)
T ss_pred -Cc---------cCCCeEEEEeCccceeCCCCHHHHHHHHHh
Confidence 00 166787787766 48999999999998653
|
CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm. |
| >PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-14 Score=131.60 Aligned_cols=218 Identities=15% Similarity=0.181 Sum_probs=136.1
Q ss_pred ceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhcc-CCcEEEEEcccCh-hHHHHHHHhhccCCCCccc
Q 014953 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNS-ASLNRHLARAYNYGSGVTF 85 (415)
Q Consensus 8 ~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~-gi~~I~vv~~~~~-~~i~~~l~~~~~~~~~~~~ 85 (415)
++.+||||||.|+||+ ...||+|+|++|+ |||.|+++++..+ .+++|+|+++... ..+.+.+.+ + + +
T Consensus 2 ~~~~iIlAaG~g~R~g---~~~~K~l~~l~gk-pll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~-~--~----~ 70 (230)
T PRK13385 2 NYELIFLAAGQGKRMN---APLNKMWLDLVGE-PIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLMKQ-L--N----V 70 (230)
T ss_pred ceEEEEECCeeccccC---CCCCcceeEECCe-EHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHHHh-c--C----c
Confidence 3689999999999996 5589999999999 9999999999875 5899999997654 223333322 1 1 1
Q ss_pred CCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHHHHHcCCcEEEEE
Q 014953 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISC 163 (415)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~h~~~~~~~ti~~ 163 (415)
....++++... .+..++++.++..+++ .+.++++.||. +...+ +.++++.+.+.++ .+.+
T Consensus 71 ~~~~~~~v~~g-----------~~r~~sv~~gl~~~~~-----~d~vli~~~d~P~i~~~~i~~li~~~~~~~~--~~~~ 132 (230)
T PRK13385 71 ADQRVEVVKGG-----------TERQESVAAGLDRIGN-----EDVILVHDGARPFLTQDIIDRLLEGVAKYGA--AICA 132 (230)
T ss_pred CCCceEEcCCC-----------chHHHHHHHHHHhccC-----CCeEEEccCCCCCCCHHHHHHHHHHHhhCCc--EEEE
Confidence 11113333211 2456899998887743 35678889999 55555 7888888776553 3333
Q ss_pred EEcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC
Q 014953 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (415)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~ 243 (415)
.+..+ .+... .++.+....+ + .. ...--+.+.|+.+.|....+.....
T Consensus 133 ~~~~d------ti~~~-~~~~~~~~i~--r-~~----------------------~~~~qtpq~f~~~~l~~~~~~~~~~ 180 (230)
T PRK13385 133 VEVKD------TVKRV-KDKQVIETVD--R-NE----------------------LWQGQTPQAFELKILQKAHRLASEQ 180 (230)
T ss_pred Eeccc------eEEEE-cCCeeEeccC--H-HH----------------------HhhhcCCceeeHHHHHHHHHHHHhc
Confidence 33322 11122 2344433322 1 10 1112346788888877665532111
Q ss_pred CCcccccchhhh-cccceEEEEEeCceEEecCCHHHHHHHHHhhc
Q 014953 244 ANDFGSEIIPAS-ANEQFLKAYLFNDYWEDIGTIRSFFEANLALT 287 (415)
Q Consensus 244 ~~~~~~~~l~~l-~~~~~i~~~~~~g~~~di~t~~~y~~an~~~l 287 (415)
.. +..|-.... ..+.++..++-+.....|+||+|+..|...+.
T Consensus 181 ~~-~~td~~~~~~~~g~~v~~v~~~~~n~kItt~eDl~~a~~~l~ 224 (230)
T PRK13385 181 QF-LGTDEASLVERSPHPVKLVQGSYYNIKLTTPEDMPLAKAILQ 224 (230)
T ss_pred CC-CcCcHHHHHHHcCCCEEEEECCcccCcCCCHHHHHHHHHHHh
Confidence 11 223322222 23567888888878899999999999987654
|
|
| >TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-14 Score=126.84 Aligned_cols=120 Identities=18% Similarity=0.250 Sum_probs=88.1
Q ss_pred EEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCceE
Q 014953 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (415)
Q Consensus 11 aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 90 (415)
+||||||.|+||+ .||+|+|++|+ |||+|+++.+.+.++++|+|++++..+.+.+.+... ++ +
T Consensus 2 ~iIla~G~s~R~g-----~~K~ll~~~g~-pll~~~i~~l~~~~~~~iivv~~~~~~~~~~~~~~~--------~~---v 64 (188)
T TIGR03310 2 AIILAAGLSSRMG-----QNKLLLPYKGK-TILEHVVDNALRLFFDEVILVLGHEADELVALLANH--------SN---I 64 (188)
T ss_pred eEEECCCCcccCC-----CCceecccCCe-eHHHHHHHHHHHcCCCcEEEEeCCcHHHHHHHhccC--------CC---e
Confidence 7999999999997 59999999999 999999999998899999999998876654443211 11 3
Q ss_pred EEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-eccc-ChHHHHHHHHHcCCcEE
Q 014953 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRM-DYMDFVQNHRQSGADIT 160 (415)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~-~l~~~l~~h~~~~~~~t 160 (415)
.++.... +..|++++++.++.+..+ .+.|++++||+ ++.. .+..+++.+...+..++
T Consensus 65 ~~v~~~~--------~~~g~~~si~~~l~~~~~-----~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~ 123 (188)
T TIGR03310 65 TLVHNPQ--------YAEGQSSSIKLGLELPVQ-----SDGYLFLLGDQPFVTPDIIQLLLEAFALKNDEIV 123 (188)
T ss_pred EEEECcC--------hhcCHHHHHHHHhcCCCC-----CCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcEE
Confidence 3332211 124889999988762211 47899999999 4443 47888887766655433
|
Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate. |
| >COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-13 Score=114.49 Aligned_cols=110 Identities=19% Similarity=0.302 Sum_probs=86.8
Q ss_pred eEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCc
Q 014953 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (415)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (415)
|.+||+|||+|+||. ..=|||++++|| |||+|+++.+.+ .+++|+++++.+....++|+....
T Consensus 1 m~~iiMAGGrGtRmg----~~EKPlleV~Gk-pLI~~v~~al~~-~~d~i~v~isp~tp~t~~~~~~~g----------- 63 (177)
T COG2266 1 MMAIIMAGGRGTRMG----RPEKPLLEVCGK-PLIDRVLEALRK-IVDEIIVAISPHTPKTKEYLESVG----------- 63 (177)
T ss_pred CceEEecCCcccccC----CCcCcchhhCCc-cHHHHHHHHHHh-hcCcEEEEeCCCCHhHHHHHHhcC-----------
Confidence 579999999999996 245999999999 999999999998 889999999999998988885421
Q ss_pred eEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHHHH
Q 014953 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHR 153 (415)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~h~ 153 (415)
++++.... .|.-.-++.++..+. .+||++++|+ +.+.. +..+++.+.
T Consensus 64 -v~vi~tpG----------~GYv~Dl~~al~~l~-------~P~lvvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 64 -VKVIETPG----------EGYVEDLRFALESLG-------TPILVVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred -ceEEEcCC----------CChHHHHHHHHHhcC-------CceEEEecccccCCHHHHHHHHHHHh
Confidence 44443221 277788888887773 5999999999 45543 566666554
|
|
| >PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-13 Score=121.38 Aligned_cols=114 Identities=20% Similarity=0.244 Sum_probs=82.6
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCccc
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (415)
|++|.|||||||.|+||. ..||+|+|++|+ |||+|+++.+. .++++|+|++++..+.+. . .
T Consensus 1 ~~~~~~vILA~G~s~Rm~----~~~K~ll~~~g~-~ll~~~i~~l~-~~~~~i~vv~~~~~~~~~----~-~-------- 61 (193)
T PRK00317 1 MPPITGVILAGGRSRRMG----GVDKGLQELNGK-PLIQHVIERLA-PQVDEIVINANRNLARYA----A-F-------- 61 (193)
T ss_pred CCCceEEEEcCCCcccCC----CCCCceeEECCE-EHHHHHHHHHh-hhCCEEEEECCCChHHHH----h-c--------
Confidence 567899999999999994 279999999999 99999999998 789999999876533221 1 0
Q ss_pred CCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHHHHH
Q 014953 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQ 154 (415)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~h~~ 154 (415)
+ +.++..... ...|+..+++.++...+ .+.+++++||. +.+.+ +..+++.+.+
T Consensus 62 ~---~~~v~~~~~-------~~~g~~~~i~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 116 (193)
T PRK00317 62 G---LPVIPDSLA-------DFPGPLAGILAGLKQAR------TEWVLVVPCDTPFIPPDLVARLAQAAGK 116 (193)
T ss_pred C---CcEEeCCCC-------CCCCCHHHHHHHHHhcC------CCeEEEEcCCcCCCCHHHHHHHHHhhhc
Confidence 0 112221111 12488889998887543 47899999999 55554 6777775543
|
|
| >PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=99.53 E-value=4e-13 Score=122.44 Aligned_cols=218 Identities=13% Similarity=0.120 Sum_probs=128.3
Q ss_pred cccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhc-cCCcEEEEEcccChhHHHHHHHhhccCCCCc
Q 014953 5 DARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCIN-SGINKVYILTQYNSASLNRHLARAYNYGSGV 83 (415)
Q Consensus 5 ~~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~-~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~ 83 (415)
.++++.+||||||.|+||+ ...||+|++++|+ |||+|+++.+.+ .++++|+|++++......+.+...+
T Consensus 21 ~~~~i~aIILAAG~gsRmg---~~~pKqll~l~Gk-pll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~~~------ 90 (252)
T PLN02728 21 KEKSVSVILLAGGVGKRMG---ANMPKQYLPLLGQ-PIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVENI------ 90 (252)
T ss_pred ccCceEEEEEcccccccCC---CCCCcceeEECCe-EHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHHhc------
Confidence 3456789999999999996 4579999999999 999999999998 4899999999876543333222111
Q ss_pred ccCCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCC--e-ecccC-hHHHHHHHHHcCCcE
Q 014953 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGD--H-LYRMD-YMDFVQNHRQSGADI 159 (415)
Q Consensus 84 ~~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD--~-i~~~~-l~~~l~~h~~~~~~~ 159 (415)
... +.++ ... .+..++++.++..+.. +..+|+.+| . +...+ +..+++...+.++
T Consensus 91 --~~~-i~~v--~gg---------~~r~~SV~~gl~~l~~------~~~~VlihDaarP~vs~~~i~~li~~~~~~ga-- 148 (252)
T PLN02728 91 --DVP-LKFA--LPG---------KERQDSVFNGLQEVDA------NSELVCIHDSARPLVTSADIEKVLKDAAVHGA-- 148 (252)
T ss_pred --CCc-eEEc--CCC---------CchHHHHHHHHHhccC------CCCEEEEecCcCCCCCHHHHHHHHHHHhhCCe--
Confidence 111 2222 111 2567889998887742 334455566 4 45544 6888887776653
Q ss_pred EEEEEEcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeee-EEEEeHHHHHHHHh
Q 014953 160 TISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMG-VYLFKKEILLNLLR 238 (415)
Q Consensus 160 ti~~~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-iyi~~~~~l~~~l~ 238 (415)
.+...+..+ .+...++++.+.. .++... ++.+. =-.|+.+.|....+
T Consensus 149 ~i~~~~~~d------tik~v~~~~~v~~---t~~R~~-----------------------l~~~QTPQ~F~~~~l~~a~~ 196 (252)
T PLN02728 149 AVLGVPVKA------TIKEANSDSFVVK---TLDRKR-----------------------LWEMQTPQVIKPELLRRGFE 196 (252)
T ss_pred EEEeecchh------hEEEecCCCceee---ccChHH-----------------------eEEEeCCccchHHHHHHHHH
Confidence 455555443 1222344454433 222111 10000 01344455544444
Q ss_pred hhCCCCCcccccchhhh-cccceEEEEEeCceEEecCCHHHHHHHHHhhc
Q 014953 239 WRFPTANDFGSEIIPAS-ANEQFLKAYLFNDYWEDIGTIRSFFEANLALT 287 (415)
Q Consensus 239 ~~~~~~~~~~~~~l~~l-~~~~~i~~~~~~g~~~di~t~~~y~~an~~~l 287 (415)
....+... ..|-...+ ..+.+|...+-+..-.-|.+|+|+..|...+.
T Consensus 197 ~~~~~~~~-~TDd~~~~~~~g~~V~~v~g~~~N~KITtpeDl~~a~~~l~ 245 (252)
T PLN02728 197 LVEREGLE-VTDDVSIVEALKHPVFITEGSYTNIKVTTPDDMLVAERILN 245 (252)
T ss_pred HHHhcCCC-cCcHHHHHHHcCCceEEEecCcccccCCCHHHHHHHHHHHh
Confidence 32211111 12222211 22566777666667788999999999987654
|
|
| >cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.5e-14 Score=122.61 Aligned_cols=121 Identities=22% Similarity=0.352 Sum_probs=89.8
Q ss_pred eEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCc
Q 014953 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (415)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (415)
+.+||||||.|+||++ ||+|+|++|+ |||+|+++.+...++++|+|++++....+.+++.. ++
T Consensus 1 ~~~vIlAgG~s~R~g~-----~K~l~~~~g~-~li~~~i~~l~~~~~~~i~vv~~~~~~~~~~~~~~---------~~-- 63 (186)
T cd04182 1 IAAIILAAGRSSRMGG-----NKLLLPLDGK-PLLRHALDAALAAGLSRVIVVLGAEADAVRAALAG---------LP-- 63 (186)
T ss_pred CeEEEECCCCCCCCCC-----CceeCeeCCe-eHHHHHHHHHHhCCCCcEEEECCCcHHHHHHHhcC---------CC--
Confidence 4589999999999984 9999999999 99999999999988999999998876655444321 11
Q ss_pred eEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-eccc-ChHHHHHHHHHcCCcE
Q 014953 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRM-DYMDFVQNHRQSGADI 159 (415)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~-~l~~~l~~h~~~~~~~ 159 (415)
+.++..... ..|++++++.++.++.. ..+.+++++||+ +.+. .+..+++.+...++.+
T Consensus 64 -~~~~~~~~~--------~~G~~~~i~~al~~~~~----~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~ 123 (186)
T cd04182 64 -VVVVINPDW--------EEGMSSSLAAGLEALPA----DADAVLILLADQPLVTAETLRALIDAFREDGAGI 123 (186)
T ss_pred -eEEEeCCCh--------hhCHHHHHHHHHHhccc----cCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCCeE
Confidence 222222111 24899999999887752 147899999999 4444 4788888776555443
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-13 Score=103.02 Aligned_cols=78 Identities=17% Similarity=0.144 Sum_probs=70.8
Q ss_pred cCCCeee-cCCccccceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCC
Q 014953 308 NLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGEN 385 (415)
Q Consensus 308 i~~~~~i-~~~~i~~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~ 385 (415)
+++++.| +++.+.++.||++|.|+ ++.|.+|+|+++|.|+++++|.+|+++++ +.||++
T Consensus 2 ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~-------------------~~i~~~ 62 (81)
T cd04652 2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNG-------------------AVIGEK 62 (81)
T ss_pred ccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCC-------------------CEECCC
Confidence 4556667 66777889999999999 69999999999999999999999999999 899999
Q ss_pred CEEeeeEECCCeEEcCCcc
Q 014953 386 TKIKYEQLKPICHIVETKY 404 (415)
Q Consensus 386 ~~i~~~~i~~~~~i~~~~~ 404 (415)
+++.+|+|++++.|+++++
T Consensus 63 ~~v~~~ii~~~~~i~~~~~ 81 (81)
T cd04652 63 CKLKDCLVGSGYRVEAGTE 81 (81)
T ss_pred CEEccCEECCCcEeCCCCC
Confidence 9999999999999999874
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.8e-12 Score=114.68 Aligned_cols=113 Identities=25% Similarity=0.309 Sum_probs=81.6
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCccc
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (415)
.+++.+||||||.|+||+ .+|+|+|++|+ |||+|+++.+.. .+++|+|++++. +...... ..+
T Consensus 5 ~~~~~~vILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~l~~-~~~~ivvv~~~~-~~~~~~~------~~~--- 67 (200)
T PRK02726 5 KNNLVALILAGGKSSRMG-----QDKALLPWQGV-PLLQRVARIAAA-CADEVYIITPWP-ERYQSLL------PPG--- 67 (200)
T ss_pred CCCceEEEEcCCCcccCC-----CCceeeEECCE-eHHHHHHHHHHh-hCCEEEEECCCH-HHHHhhc------cCC---
Confidence 356889999999999997 58999999999 999999999975 478999988642 2221111 001
Q ss_pred CCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHHHH
Q 014953 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHR 153 (415)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~h~ 153 (415)
+.++..... ..|..++++.++..++ .+.++|++||+ ++..+ +..+++.+.
T Consensus 68 ----~~~i~~~~~--------~~G~~~si~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~ 119 (200)
T PRK02726 68 ----CHWLREPPP--------SQGPLVAFAQGLPQIK------TEWVLLLACDLPRLTVDVLQEWLQQLE 119 (200)
T ss_pred ----CeEecCCCC--------CCChHHHHHHHHHhCC------CCcEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 223322221 2589999999998775 37899999999 55554 677777654
|
|
| >COG2068 Uncharacterized MobA-related protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.7e-12 Score=109.62 Aligned_cols=122 Identities=20% Similarity=0.311 Sum_probs=92.3
Q ss_pred cccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcc
Q 014953 5 DARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVT 84 (415)
Q Consensus 5 ~~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~ 84 (415)
.+.++-|||||||.|+||+ .+|-|+|+.|+ ||++++++.+..++++++++|++|........+. ...
T Consensus 2 ~~~~v~~VvLAAGrssRmG-----~~KlLap~~g~-plv~~~~~~a~~a~~~~vivV~g~~~~~~~~a~~----~~~--- 68 (199)
T COG2068 2 RPSTVAAVVLAAGRSSRMG-----QPKLLAPLDGK-PLVRASAETALSAGLDRVIVVTGHRVAEAVEALL----AQL--- 68 (199)
T ss_pred CCcceEEEEEcccccccCC-----CcceecccCCC-cHHHHHHHHHHhcCCCeEEEEeCcchhhHHHhhh----ccC---
Confidence 3567889999999999998 99999999999 9999999999999999999999997322222221 111
Q ss_pred cCCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe--ecccChHHHHHHHHHc
Q 014953 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQS 155 (415)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~--i~~~~l~~~l~~h~~~ 155 (415)
.+.++... +|..|.+.|++.+....... .+-++++.||+ +...++..+++.+...
T Consensus 69 ----~~~~v~np--------d~~~Gls~Sl~ag~~a~~~~----~~~v~~~lgDmP~V~~~t~~rl~~~~~~~ 125 (199)
T COG2068 69 ----GVTVVVNP--------DYAQGLSTSLKAGLRAADAE----GDGVVLMLGDMPQVTPATVRRLIAAFRAR 125 (199)
T ss_pred ----CeEEEeCc--------chhhhHhHHHHHHHHhcccC----CCeEEEEeCCCCCCCHHHHHHHHHhcccc
Confidence 13333222 23469999999999887641 25899999999 4455688888877666
|
|
| >cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.43 E-value=8e-13 Score=103.93 Aligned_cols=78 Identities=22% Similarity=0.337 Sum_probs=71.0
Q ss_pred eee-cCCccccceECCCCEEcceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEee
Q 014953 312 SKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKY 390 (415)
Q Consensus 312 ~~i-~~~~i~~~~ig~~~~I~~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~ 390 (415)
+++ +++.+.+++||++|+|+++.|++|+||++|+|+++++|.+|+++++ +.||++|.+++
T Consensus 2 ~~i~~~~~i~~s~Ig~~~~I~~~~I~~svi~~~~~Ig~~~~I~~siI~~~-------------------~~Ig~~~~i~~ 62 (104)
T cd04651 2 PYIGRRGEVKNSLVSEGCIISGGTVENSVLFRGVRVGSGSVVEDSVIMPN-------------------VGIGRNAVIRR 62 (104)
T ss_pred ceecCCCEEEeEEECCCCEEcCeEEEeCEEeCCCEECCCCEEEEeEEcCC-------------------CEECCCCEEEe
Confidence 455 6777789999999999989999999999999999999999999999 89999999999
Q ss_pred eEECCCeEEcCCcccCcc
Q 014953 391 EQLKPICHIVETKYDSST 408 (415)
Q Consensus 391 ~~i~~~~~i~~~~~~~~~ 408 (415)
|+|+++++|+++......
T Consensus 63 siig~~~~Ig~~~~v~~~ 80 (104)
T cd04651 63 AIIDKNVVIPDGVVIGGD 80 (104)
T ss_pred EEECCCCEECCCCEECCC
Confidence 999999999999876554
|
It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. |
| >TIGR03584 PseF pseudaminic acid CMP-transferase | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.4e-11 Score=110.76 Aligned_cols=214 Identities=19% Similarity=0.223 Sum_probs=139.4
Q ss_pred EEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccC-CcEEEEEcccChhHHHHHHHhhccCCCCcccCCce
Q 014953 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVTFGDGC 89 (415)
Q Consensus 11 aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~g-i~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 89 (415)
|||+|+|.++||. .|.++|++|+ ||+.|+++.+.+++ +++|+|.+. .+.+.+...+ + +. .
T Consensus 2 aiIpArG~Skr~~------~Knl~~l~Gk-pLi~~ti~~a~~s~~~d~IvVstd--~~~i~~~a~~-~--g~------~- 62 (222)
T TIGR03584 2 AIIPARGGSKRIP------RKNIKPFCGK-PMIAYSIEAALNSGLFDKVVVSTD--DEEIAEVAKS-Y--GA------S- 62 (222)
T ss_pred EEEccCCCCCCCC------CccchhcCCc-CHHHHHHHHHHhCCCCCEEEEeCC--CHHHHHHHHH-c--CC------E-
Confidence 8999999999993 6999999999 99999999999876 677777554 3455554432 1 11 1
Q ss_pred EEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecc-cChHHHHHHHHHcCCcEEEEEEEcC
Q 014953 90 VEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYR-MDYMDFVQNHRQSGADITISCLPMD 167 (415)
Q Consensus 90 v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~-~~l~~~l~~h~~~~~~~ti~~~~~~ 167 (415)
+.+..+..-. ....|+.+++++++..++.. ...+.++++.+|. +.. .++.++++.+.+.+++..+.+.+..
T Consensus 63 v~~~r~~~l~-----~d~~~~~~si~~~l~~l~~~--~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~~~ 135 (222)
T TIGR03584 63 VPFLRPKELA-----DDFTGTAPVVKHAIEELKLQ--KQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTSFA 135 (222)
T ss_pred eEEeChHHHc-----CCCCCchHHHHHHHHHHhhc--CCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeeccC
Confidence 1111111100 01248899999998877421 1147799999999 444 4589999998887788777777754
Q ss_pred CCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCCcc
Q 014953 168 DSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDF 247 (415)
Q Consensus 168 ~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~~~~~ 247 (415)
.. ..+. ...+++|++..+........ ++-....+..+.++|+++++.+.. . . .
T Consensus 136 ~~--~~~~-~~~~~~g~~~~~~~~~~~~~---------------rQd~~~~y~~nga~y~~~~~~~~~---~----~-~- 188 (222)
T TIGR03584 136 FP--IQRA-FKLKENGGVEMFFPEHFNTR---------------SQDLEEAYHDAGQFYWGKSQAWLE---S----G-P- 188 (222)
T ss_pred CC--hHHh-eEECCCCcEEecCCCcccCC---------------CCCCchheeeCCeEEEEEHHHHHh---c----C-C-
Confidence 31 2222 24445677666552211100 010112366789999999987742 1 0 1
Q ss_pred cccchhhhcccceEEEEEeCc-eEEecCCHHHHHHHHHh
Q 014953 248 GSEIIPASANEQFLKAYLFND-YWEDIGTIRSFFEANLA 285 (415)
Q Consensus 248 ~~~~l~~l~~~~~i~~~~~~g-~~~di~t~~~y~~an~~ 285 (415)
.-++++..|..+. ...||++++|+..|...
T Consensus 189 --------~~~~~~~~~~m~~~~~iDID~~~D~~~ae~l 219 (222)
T TIGR03584 189 --------IFSPHSIPIVLPRHLVQDIDTLEDWERAELL 219 (222)
T ss_pred --------ccCCCcEEEEeCccceeCCCCHHHHHHHHHH
Confidence 1146678888775 48999999999999764
|
The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. |
| >cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.6e-13 Score=114.79 Aligned_cols=107 Identities=19% Similarity=0.268 Sum_probs=81.2
Q ss_pred eEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCc
Q 014953 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (415)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (415)
+.|||||||.|+||+ .||+|+|++|+ |||+|+++.+... +++|+|++++..+. +. . ++
T Consensus 1 ~~~iILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~l~~~-~~~iivv~~~~~~~---~~--~--------~~-- 58 (181)
T cd02503 1 ITGVILAGGKSRRMG-----GDKALLELGGK-PLLEHVLERLKPL-VDEVVISANRDQER---YA--L--------LG-- 58 (181)
T ss_pred CcEEEECCCccccCC-----CCceeeEECCE-EHHHHHHHHHHhh-cCEEEEECCCChHH---Hh--h--------cC--
Confidence 468999999999997 39999999999 9999999999987 89999999877544 11 0 11
Q ss_pred eEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHHH
Q 014953 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNH 152 (415)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~h 152 (415)
+.++..... ..|+.++++.++..++ .+.+++++||+ +.+.+ +..+++.+
T Consensus 59 -~~~v~~~~~--------~~G~~~si~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~ 109 (181)
T cd02503 59 -VPVIPDEPP--------GKGPLAGILAALRAAP------ADWVLVLACDMPFLPPELLERLLAAA 109 (181)
T ss_pred -CcEeeCCCC--------CCCCHHHHHHHHHhcC------CCeEEEEeCCcCCCCHHHHHHHHHhh
Confidence 222222111 2589999999988764 48999999999 44554 67777765
|
The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target. |
| >PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.7e-12 Score=111.67 Aligned_cols=109 Identities=17% Similarity=0.335 Sum_probs=75.3
Q ss_pred CCcccccceEEEEEcCCCCCcccccccCCcccceeeCC-cceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccC
Q 014953 1 MEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGG-AYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNY 79 (415)
Q Consensus 1 ~~~~~~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g-~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~ 79 (415)
|......++.+||||||.|+||+ .||+|+|++| + |||+|+++.+... +++|+|++++. .. . +
T Consensus 1 ~~~~~~~~i~~vILAgG~s~RmG-----~~K~ll~~~g~~-~ll~~~i~~l~~~-~~~vvvv~~~~--~~----~----~ 63 (196)
T PRK00560 1 MKNPMIDNIPCVILAGGKSSRMG-----ENKALLPFGSYS-SLLEYQYTRLLKL-FKKVYISTKDK--KF----E----F 63 (196)
T ss_pred CCCccccCceEEEECCcccccCC-----CCceEEEeCCCC-cHHHHHHHHHHHh-CCEEEEEECch--hc----c----c
Confidence 33444567889999999999996 7999999999 9 9999999999876 88999988751 11 0 1
Q ss_pred CCCcccCCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHH
Q 014953 80 GSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDF 148 (415)
Q Consensus 80 ~~~~~~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~ 148 (415)
. +.++..... ...|...++..++...+ .+.+++++||+ +.+.+ +.++
T Consensus 64 ~---------~~~v~d~~~-------~~~gpl~gi~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l 112 (196)
T PRK00560 64 N---------APFLLEKES-------DLFSPLFGIINAFLTLQ------TPEIFFISVDTPFVSFESIKKL 112 (196)
T ss_pred C---------CcEEecCCC-------CCCCcHHHHHHHHHhcC------CCeEEEEecCcCcCCHHHHHHH
Confidence 0 112222111 02466667766554333 48999999999 55655 3444
|
|
| >PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.3e-12 Score=120.53 Aligned_cols=121 Identities=19% Similarity=0.258 Sum_probs=86.0
Q ss_pred cccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcc
Q 014953 5 DARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVT 84 (415)
Q Consensus 5 ~~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~ 84 (415)
.++++.+||||||.|+||+ ..||+|+|++|+ |||+|+++.+.. .+++|+|+++...+.+.+++. +
T Consensus 2 ~~~~i~~VILAgG~s~Rmg----g~~K~ll~i~Gk-pll~~~i~~l~~-~~~~iivvv~~~~~~~~~~~~------~--- 66 (366)
T PRK14489 2 QISQIAGVILAGGLSRRMN----GRDKALILLGGK-PLIERVVDRLRP-QFARIHLNINRDPARYQDLFP------G--- 66 (366)
T ss_pred CCCCceEEEEcCCcccCCC----CCCCceeEECCe-eHHHHHHHHHHh-hCCEEEEEcCCCHHHHHhhcc------C---
Confidence 4567899999999999994 379999999999 999999999975 589999977665444333211 0
Q ss_pred cCCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHHHHHcCCc
Q 014953 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGAD 158 (415)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~h~~~~~~ 158 (415)
+.++..... ...|..++++.++..++ .+.+++++||+ ++..+ +..+++.+...+++
T Consensus 67 -----~~~i~d~~~-------g~~G~~~si~~gl~~~~------~~~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~ 124 (366)
T PRK14489 67 -----LPVYPDILP-------GFQGPLSGILAGLEHAD------SEYLFVVACDTPFLPENLVKRLSKALAIEGAD 124 (366)
T ss_pred -----CcEEecCCC-------CCCChHHHHHHHHHhcC------CCcEEEeeCCcCCCCHHHHHHHHHHhhccCCe
Confidence 112211111 11488899999987764 46799999998 55555 67777765555544
|
|
| >PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate [] | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.5e-11 Score=107.05 Aligned_cols=214 Identities=17% Similarity=0.216 Sum_probs=124.1
Q ss_pred eEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhc-cCCcEEEEEcccChh-HHHHHHHhhccCCCCcccC
Q 014953 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCIN-SGINKVYILTQYNSA-SLNRHLARAYNYGSGVTFG 86 (415)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~-~gi~~I~vv~~~~~~-~i~~~l~~~~~~~~~~~~~ 86 (415)
+-|||||||.|+||. ...||.+++++|+ |+|.|+++.+.+ ..+++|+|++..... .+++.+.+ .
T Consensus 1 V~aIilAaG~G~R~g---~~~pKQf~~l~Gk-pvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~-~--------- 66 (221)
T PF01128_consen 1 VAAIILAAGSGSRMG---SGIPKQFLELGGK-PVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSK-K--------- 66 (221)
T ss_dssp EEEEEEESS-STCCT---SSS-GGGSEETTE-EHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHH-T---------
T ss_pred CEEEEeCCccchhcC---cCCCCeeeEECCe-EeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcC-C---------
Confidence 358999999999997 6799999999999 999999999987 568999999987763 33333322 1
Q ss_pred CceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHHHHHcCCcEEEEEE
Q 014953 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCL 164 (415)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~h~~~~~~~ti~~~ 164 (415)
.+.++.-. ....++++.++..+... .+.+++..|=- +...+ +.++++..++. ....+...
T Consensus 67 --~v~iv~GG-----------~tR~~SV~ngL~~l~~~----~d~VlIHDaaRPfv~~~~i~~~i~~~~~~-~~aai~~~ 128 (221)
T PF01128_consen 67 --KVKIVEGG-----------ATRQESVYNGLKALAED----CDIVLIHDAARPFVSPELIDRVIEAAREG-HGAAIPAL 128 (221)
T ss_dssp --TEEEEE-------------SSHHHHHHHHHHCHHCT----SSEEEEEETTSTT--HHHHHHHHHHHHHT-CSEEEEEE
T ss_pred --CEEEecCC-----------hhHHHHHHHHHHHHHcC----CCEEEEEccccCCCCHHHHHHHHHHHHhh-cCcEEEEE
Confidence 14444211 25788999999888652 35677766655 44444 67788776552 34456666
Q ss_pred EcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeee-eEEEEeHHHHHHHHhhhCCC
Q 014953 165 PMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASM-GVYLFKKEILLNLLRWRFPT 243 (415)
Q Consensus 165 ~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Giyi~~~~~l~~~l~~~~~~ 243 (415)
+..+ .+...+++|.+.+..+.... +.+ -=-.|..+.|....+.....
T Consensus 129 p~~D------Tik~v~~~~~v~~tldR~~l--------------------------~~~QTPQ~F~~~~l~~a~~~a~~~ 176 (221)
T PF01128_consen 129 PVTD------TIKRVDDDGFVTETLDRSKL--------------------------WAVQTPQAFRFELLLEAYEKADEE 176 (221)
T ss_dssp E-SS------EEEEESTTSBEEEEETGGGE--------------------------EEEEEEEEEEHHHHHHHHHTHHHH
T ss_pred eccc------cEEEEecCCcccccCCHHHe--------------------------eeecCCCeecHHHHHHHHHHHHhc
Confidence 6554 23345556766655432211 111 01245666666555443111
Q ss_pred CCcccccchhhhcccceEEEEEeCceEEecCCHHHHHHHHHhh
Q 014953 244 ANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLAL 286 (415)
Q Consensus 244 ~~~~~~~~l~~l~~~~~i~~~~~~g~~~di~t~~~y~~an~~~ 286 (415)
...+..|.--....+.++...+-+..-+-|.+|+|+..|...+
T Consensus 177 ~~~~tDdasl~~~~g~~v~~V~G~~~N~KIT~peDl~~ae~ll 219 (221)
T PF01128_consen 177 GFEFTDDASLVEAAGKKVAIVEGSPRNIKITTPEDLELAEALL 219 (221)
T ss_dssp THHHSSHHHHHHHTTS-EEEEE--TTG----SHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHcCCCEEEEeCCCCceeECCHHHHHHHHHHh
Confidence 1111111111111267777777666678899999999998754
|
The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B .... |
| >cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.7e-12 Score=93.96 Aligned_cols=75 Identities=20% Similarity=0.190 Sum_probs=66.4
Q ss_pred cCCCeee-cCCccccceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCC
Q 014953 308 NLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGEN 385 (415)
Q Consensus 308 i~~~~~i-~~~~i~~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~ 385 (415)
+++++.+ +++.+.+++||++|.|+ ++.|++|+|+++|+|+++++|.+|+++++ +.|+++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~-------------------~~i~~~ 62 (79)
T cd03356 2 IGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDN-------------------AVIGEN 62 (79)
T ss_pred ccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCC-------------------CEECCC
Confidence 4556667 56777789999999998 79999999999999999999999999999 899999
Q ss_pred CEEee-eEECCCeEEcC
Q 014953 386 TKIKY-EQLKPICHIVE 401 (415)
Q Consensus 386 ~~i~~-~~i~~~~~i~~ 401 (415)
+.+.+ ++++++++|++
T Consensus 63 ~~i~~~~~ig~~~~i~~ 79 (79)
T cd03356 63 VRVVNLCIIGDDVVVED 79 (79)
T ss_pred CEEcCCeEECCCeEECc
Confidence 99985 99999999874
|
Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.5e-10 Score=102.48 Aligned_cols=222 Identities=16% Similarity=0.190 Sum_probs=134.1
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhcc-CCcEEEEEcccCh-hHHHHHHHhhccCCCCc
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNS-ASLNRHLARAYNYGSGV 83 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~-gi~~I~vv~~~~~-~~i~~~l~~~~~~~~~~ 83 (415)
++++-|||||||.|+||. ...||.+++++|+ ||+.|+++.|... .+++|+|++.... ..+.++.. ...
T Consensus 2 ~~~~~~vilAaG~G~R~~---~~~pKq~l~l~g~-pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~--~~~---- 71 (230)
T COG1211 2 RMMVSAVILAAGFGSRMG---NPVPKQYLELGGR-PLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPK--LSA---- 71 (230)
T ss_pred CceEEEEEEcCccccccC---CCCCceEEEECCE-EehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhh--hcc----
Confidence 456789999999999998 5899999999999 9999999999875 4799999998744 33333332 101
Q ss_pred ccCCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHHHHHcCCcEEE
Q 014953 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITI 161 (415)
Q Consensus 84 ~~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~h~~~~~~~ti 161 (415)
...++++... ....++++.++..++. ...+.||+..+=- +...+ +.++++.... ..+.+
T Consensus 72 ---~~~v~~v~GG-----------~~R~~SV~~gL~~~~~---~~~~~VlvHDaaRPf~~~~~i~~li~~~~~--~~aai 132 (230)
T COG1211 72 ---DKRVEVVKGG-----------ATRQESVYNGLQALSK---YDSDWVLVHDAARPFLTPKLIKRLIELADK--YGAAI 132 (230)
T ss_pred ---CCeEEEecCC-----------ccHHHHHHHHHHHhhc---cCCCEEEEeccccCCCCHHHHHHHHHhhcc--CCcEE
Confidence 1124443221 2578999999988863 1246777776654 44443 6777743332 33466
Q ss_pred EEEEcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhC
Q 014953 162 SCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF 241 (415)
Q Consensus 162 ~~~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~ 241 (415)
.+.+..+ .+...++++.+........... ...| -.|+.+.|.+......
T Consensus 133 ~alpv~D------Tik~~~~~~~i~~t~~R~~l~~-----------~QTP--------------Q~F~~~~L~~a~~~a~ 181 (230)
T COG1211 133 LALPVTD------TLKRVDADGNIVETVDRSGLWA-----------AQTP--------------QAFRLELLKQALARAF 181 (230)
T ss_pred EEeeccC------cEEEecCCCCeeeccChhhhhh-----------hhCC--------------ccccHHHHHHHHHHHH
Confidence 6666654 2333444566665543322111 0011 1344455555544332
Q ss_pred CCCCcccccchhhhcccceEEEEEeCceEEecCCHHHHHHHHHhhc
Q 014953 242 PTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALT 287 (415)
Q Consensus 242 ~~~~~~~~~~l~~l~~~~~i~~~~~~g~~~di~t~~~y~~an~~~l 287 (415)
.+..++..|.--....+.++....=+-+-+.|.+|+|+..|+..+-
T Consensus 182 ~~~~~~tDdas~~e~~G~~v~lV~G~~~n~KiTtpeDL~~a~~il~ 227 (230)
T COG1211 182 AEGREITDDASAIEKAGGPVSLVEGSADNFKITTPEDLEIAEAILR 227 (230)
T ss_pred hcCCCcCCHHHHHHHcCCCeEEEecCcceeEecCHHHHHHHHHHhc
Confidence 2221222111111122567777776667899999999999987553
|
|
| >COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.9e-11 Score=102.59 Aligned_cols=235 Identities=18% Similarity=0.279 Sum_probs=158.9
Q ss_pred cceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccC
Q 014953 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (415)
++..+||+|-=.+||| --|||--|+|+ |||.|+.+++.++|.++++|.+. ++.+.+.+.+ ++
T Consensus 2 ~~~~viIPAR~~STRL------pgKPLadI~Gk-pmI~rV~e~a~~s~~~rvvVATD--de~I~~av~~---------~G 63 (247)
T COG1212 2 MKFVVIIPARLASTRL------PGKPLADIGGK-PMIVRVAERALKSGADRVVVATD--DERIAEAVQA---------FG 63 (247)
T ss_pred CceEEEEecchhcccC------CCCchhhhCCc-hHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHH---------hC
Confidence 5667899999999999 57999999999 99999999999999999999984 4567776653 22
Q ss_pred CceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHHHHHcCCcEEEEEE
Q 014953 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCL 164 (415)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~h~~~~~~~ti~~~ 164 (415)
.. + ++.. .. ...||- .+..+...+.- ...+-++=+.||. ++... +..+++...+.++++.-+..
T Consensus 64 ~~-a-vmT~-~~-------h~SGTd-R~~Ev~~~l~~---~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~ 129 (247)
T COG1212 64 GE-A-VMTS-KD-------HQSGTD-RLAEVVEKLGL---PDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAV 129 (247)
T ss_pred CE-E-EecC-CC-------CCCccH-HHHHHHHhcCC---CcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeee
Confidence 11 1 1111 11 113553 44444444421 1246677789999 44443 78888888877788777776
Q ss_pred EcCCCc---CCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhC
Q 014953 165 PMDDSR---ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF 241 (415)
Q Consensus 165 ~~~~~~---~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~ 241 (415)
+..++. .++-..+..|.+|+-+-|...|-+..... .- + .+.+.-.|||.|++++|.++....
T Consensus 130 ~i~~~ee~~nPN~VKvV~d~~g~ALYFSRs~iP~~rd~-~~--------~-----~p~l~HIGIYayr~~~L~~f~~~~- 194 (247)
T COG1212 130 KITDEEEAFNPNVVKVVLDKEGYALYFSRAPIPYGRDN-FG--------G-----TPFLRHIGIYAYRAGFLERFVALK- 194 (247)
T ss_pred ecCCHHHhcCCCcEEEEEcCCCcEEEEEcCCCCCcccc-cC--------C-----cchhheeehHHhHHHHHHHHHhcC-
Confidence 665421 23445567788899999998776543110 00 0 135677899999999998776543
Q ss_pred CCC-Cccc-ccchhhhcccceEEEEEeCceE-EecCCHHHHHHHHHhhcC
Q 014953 242 PTA-NDFG-SEIIPASANEQFLKAYLFNDYW-EDIGTIRSFFEANLALTA 288 (415)
Q Consensus 242 ~~~-~~~~-~~~l~~l~~~~~i~~~~~~g~~-~di~t~~~y~~an~~~l~ 288 (415)
+.. +..+ -+.|.-|-.+.+|.+...+..- ..++|++||.+|.+.+.+
T Consensus 195 ps~LE~~E~LEQLR~Le~G~kI~v~i~~~~p~~gVDT~EDLe~v~~~~~~ 244 (247)
T COG1212 195 PSPLEKIESLEQLRVLENGEKIHVEIVKEVPSIGVDTPEDLERVRKILSN 244 (247)
T ss_pred CchhHHHHHHHHHHHHHcCCeeEEEEeccCCCCCCCCHHHHHHHHHHHHh
Confidence 221 0000 1345556678899999988654 899999999999876643
|
|
| >TIGR03202 pucB xanthine dehydrogenase accessory protein pucB | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.4e-12 Score=109.42 Aligned_cols=122 Identities=19% Similarity=0.247 Sum_probs=84.2
Q ss_pred EEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCce
Q 014953 10 AAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGC 89 (415)
Q Consensus 10 ~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 89 (415)
.+||||||.|+||. .||.|++++|+ ||++|+++.+.+.++++++|++++..+.+. .+.... ... ..
T Consensus 2 ~~vILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~~~~~~~~~i~vv~~~~~~~~~-~~~~~~-~~~------~~ 67 (190)
T TIGR03202 2 VAIYLAAGQSRRMG-----ENKLALPLGET-TLGSASLKTALSSRLSKVIVVIGEKYAHLS-WLDPYL-LAD------ER 67 (190)
T ss_pred eEEEEcCCccccCC-----CCceeceeCCc-cHHHHHHHHHHhCCCCcEEEEeCCccchhh-hhhHhh-hcC------CC
Confidence 58999999999997 58999999999 999999998888899999999987654321 111110 000 01
Q ss_pred EEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHHHHHcC
Q 014953 90 VEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSG 156 (415)
Q Consensus 90 v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~h~~~~ 156 (415)
+.++... ++..|.+.+++.++..+.. ...+.+++++||+ +...+ +..+++.....+
T Consensus 68 ~~~~~~~--------~~~~G~~~si~~gl~~~~~---~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~ 125 (190)
T TIGR03202 68 IMLVCCR--------DACEGQAHSLKCGLRKAEA---MGADAVVILLADQPFLTADVINALLALAKRRP 125 (190)
T ss_pred eEEEECC--------ChhhhHHHHHHHHHHHhcc---CCCCeEEEEeCCCCCCCHHHHHHHHHHHhhCC
Confidence 2222111 1124889999999887632 1147899999999 55555 677777654433
|
In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental. |
| >KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.8e-12 Score=124.89 Aligned_cols=94 Identities=13% Similarity=0.027 Sum_probs=78.9
Q ss_pred CCCccccCccCCCeee-cCCccccceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCC
Q 014953 299 TKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEG 376 (415)
Q Consensus 299 ~~~~~~~~~i~~~~~i-~~~~i~~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~ 376 (415)
...+...+.|+.++.| .++.|.||+||+||.|| |+.|++|.||.||+||+||+|.+|+|++++.|++|
T Consensus 327 ~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~v~i~~~---------- 396 (673)
T KOG1461|consen 327 SVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDDVKIGEG---------- 396 (673)
T ss_pred hccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeecCcEeCCC----------
Confidence 3455666777777778 68888999999999999 89999999999999999999999999999988877
Q ss_pred CcceEeCCCCEEe-eeEECCCeEEcCCccc
Q 014953 377 RVPVGIGENTKIK-YEQLKPICHIVETKYD 405 (415)
Q Consensus 377 ~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~ 405 (415)
|.+.+||+|. +.++|++-.++.++++
T Consensus 397 ---~~l~~g~vl~~~VVv~~~~~l~~ns~~ 423 (673)
T KOG1461|consen 397 ---AILKPGSVLGFGVVVGRNFVLPKNSKV 423 (673)
T ss_pred ---cccCCCcEEeeeeEeCCCccccccccc
Confidence 6666777777 7777777777777554
|
|
| >TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.2e-12 Score=109.07 Aligned_cols=117 Identities=23% Similarity=0.287 Sum_probs=83.0
Q ss_pred eEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCc
Q 014953 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (415)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (415)
+.+||||||.|+||. ..||+|+|++|+ |||+|+++.+.. ++++|+|++.+..+. +.... ++
T Consensus 1 ~~~iILAgG~s~Rmg----~~~K~l~~i~g~-pll~~~l~~l~~-~~~~ivv~~~~~~~~---~~~~~--------~~-- 61 (186)
T TIGR02665 1 ISGVILAGGRARRMG----GRDKGLVELGGK-PLIEHVLARLRP-QVSDLAISANRNPER---YAQAG--------FG-- 61 (186)
T ss_pred CeEEEEcCCccccCC----CCCCceeEECCE-EHHHHHHHHHHh-hCCEEEEEcCCCHHH---Hhhcc--------CC--
Confidence 358999999999996 259999999999 999999999976 589999988755322 11110 11
Q ss_pred eEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHHHHHcCCc
Q 014953 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGAD 158 (415)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~h~~~~~~ 158 (415)
+.++..... ...|++++++.++..++ .+.+++++||+ +.+.+ +.++++.+.+.++.
T Consensus 62 -~~~i~~~~~-------~~~g~~~si~~al~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~ 119 (186)
T TIGR02665 62 -LPVVPDALA-------DFPGPLAGILAGLRWAG------TDWVLTVPCDTPFLPEDLVARLAAALEASDAD 119 (186)
T ss_pred -CcEEecCCC-------CCCCCHHHHHHHHHhcC------CCeEEEEecCCCcCCHHHHHHHHHHhhccCCc
Confidence 122222111 12599999999988774 47899999999 56665 67777765543443
|
In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family. |
| >cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat | Back alignment and domain information |
|---|
Probab=99.29 E-value=1e-10 Score=106.26 Aligned_cols=115 Identities=25% Similarity=0.319 Sum_probs=78.1
Q ss_pred EEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccC-CcEEEEEcccCh--hHHHHHHHhhccCCCCcccCC
Q 014953 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNS--ASLNRHLARAYNYGSGVTFGD 87 (415)
Q Consensus 11 aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~g-i~~I~vv~~~~~--~~i~~~l~~~~~~~~~~~~~~ 87 (415)
|||||+|.++||. +|.|+|++|+ ||++|+++.+...+ +++++|+++... +.+.+++... +
T Consensus 2 aiIlA~G~S~R~~------~K~ll~l~Gk-pli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~~~-----~----- 64 (233)
T cd02518 2 AIIQARMGSTRLP------GKVLKPLGGK-PLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKKL-----G----- 64 (233)
T ss_pred EEEeeCCCCCCCC------CCcccccCCc-cHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHHHc-----C-----
Confidence 7999999999993 5999999999 99999999999987 899999998765 4555554321 1
Q ss_pred ceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHHHHHcCCcEE
Q 014953 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADIT 160 (415)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~h~~~~~~~t 160 (415)
+.++.... .+.......++...+ .+.++++.||+ +.+.+ +.++++.+...+.+.+
T Consensus 65 --v~~v~~~~----------~~~l~~~~~~~~~~~------~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~ 121 (233)
T cd02518 65 --VKVFRGSE----------EDVLGRYYQAAEEYN------ADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYT 121 (233)
T ss_pred --CeEEECCc----------hhHHHHHHHHHHHcC------CCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence 22221111 011112222221111 47899999999 55544 7899988876665544
|
Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration. |
| >cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains | Back alignment and domain information |
|---|
Probab=99.29 E-value=8e-12 Score=106.95 Aligned_cols=65 Identities=9% Similarity=0.040 Sum_probs=49.9
Q ss_pred cCccCCCeee-cCCccc-cceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHH
Q 014953 305 SRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEV 369 (415)
Q Consensus 305 ~~~i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~ 369 (415)
.+.+++++.+ +++.+. +++||++|.|+ ++.|.+|+|++++.|+.++.+.+|+|++++.|.+++.+
T Consensus 35 ~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~siIg~~~~I~~~~~i 102 (163)
T cd05636 35 PVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGENVNLGAGTIT 102 (163)
T ss_pred CeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecCEECCCCEECCCcEE
Confidence 3444444555 455554 68888888888 68888899999999998889988999999888888755
|
Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.6e-12 Score=117.40 Aligned_cols=68 Identities=22% Similarity=0.321 Sum_probs=65.0
Q ss_pred cceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEeeeEECCCeEE
Q 014953 321 DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKYEQLKPICHI 399 (415)
Q Consensus 321 ~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~~i~~~~~i 399 (415)
++.+|++|.|+ ++.|++|+||++|.||++++|.+|++|+| ++||+||.|+|||||+++.|
T Consensus 334 d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~n-------------------V~vg~G~~IensIIg~gA~I 394 (433)
T KOG1462|consen 334 DSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMDN-------------------VVVGDGVNIENSIIGMGAQI 394 (433)
T ss_pred hhccCCCceecccceeeeeeecCCccccCCcEEEeeEeecC-------------------cEecCCcceecceeccccee
Confidence 68899999999 79999999999999999999999999999 89999999999999999999
Q ss_pred cCCcccCc
Q 014953 400 VETKYDSS 407 (415)
Q Consensus 400 ~~~~~~~~ 407 (415)
++|++...
T Consensus 395 g~gs~L~n 402 (433)
T KOG1462|consen 395 GSGSKLKN 402 (433)
T ss_pred cCCCeeee
Confidence 99998654
|
|
| >PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=7e-11 Score=114.43 Aligned_cols=111 Identities=13% Similarity=0.176 Sum_probs=76.9
Q ss_pred cccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcc
Q 014953 5 DARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVT 84 (415)
Q Consensus 5 ~~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~ 84 (415)
++.++.+||||||.|+||+ .+|+|+|++|+ |||+|+++.+.. .+++++|+++...... +..
T Consensus 171 ~~~~i~~iILAGG~SsRmG-----~~K~ll~~~Gk-~ll~~~l~~l~~-~~~~vvV~~~~~~~~~---~~~--------- 231 (369)
T PRK14490 171 EEVPLSGLVLAGGRSSRMG-----SDKALLSYHES-NQLVHTAALLRP-HCQEVFISCRAEQAEQ---YRS--------- 231 (369)
T ss_pred ccCCceEEEEcCCccccCC-----CCcEEEEECCc-cHHHHHHHHHHh-hCCEEEEEeCCchhhH---Hhh---------
Confidence 4567889999999999997 69999999999 999999999976 4788888776542211 111
Q ss_pred cCCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHH
Q 014953 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQN 151 (415)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~ 151 (415)
++ +.++..... ..|...++..++.... .+.+++++||+ +.+.+ +..+++.
T Consensus 232 ~~---v~~i~d~~~--------~~Gpl~gi~~al~~~~------~~~~lv~~~DmP~i~~~~i~~L~~~ 283 (369)
T PRK14490 232 FG---IPLITDSYL--------DIGPLGGLLSAQRHHP------DAAWLVVACDLPFLDEATLQQLVEG 283 (369)
T ss_pred cC---CcEEeCCCC--------CCCcHHHHHHHHHhCC------CCcEEEEeCCcCCCCHHHHHHHHHh
Confidence 11 223322211 1477788887765543 46899999999 55554 5566553
|
|
| >cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.9e-11 Score=89.38 Aligned_cols=75 Identities=16% Similarity=0.154 Sum_probs=58.3
Q ss_pred cCCCeee-cCCccccceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCC
Q 014953 308 NLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGEN 385 (415)
Q Consensus 308 i~~~~~i-~~~~i~~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~ 385 (415)
+++++++ +++.+.++.||++|.|+ ++.|.+|+|++++.|+++++|.+++++++ +.||++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~-------------------~~i~~~ 62 (79)
T cd05787 2 IGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADG-------------------AVIGKG 62 (79)
T ss_pred ccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCC-------------------CEECCC
Confidence 3455666 55666778888888887 57788888888888888888888888888 788888
Q ss_pred CEEe-eeEECCCeEEcC
Q 014953 386 TKIK-YEQLKPICHIVE 401 (415)
Q Consensus 386 ~~i~-~~~i~~~~~i~~ 401 (415)
+++. +++++++++|++
T Consensus 63 ~~i~~~~~v~~~~~ig~ 79 (79)
T cd05787 63 CTIPPGSLISFGVVIGD 79 (79)
T ss_pred CEECCCCEEeCCcEeCc
Confidence 8887 788888877764
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.4e-11 Score=88.45 Aligned_cols=74 Identities=19% Similarity=0.227 Sum_probs=63.7
Q ss_pred CCCeee-cCCcc-ccceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCC
Q 014953 309 LPPSKI-DDSKI-VDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGEN 385 (415)
Q Consensus 309 ~~~~~i-~~~~i-~~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~ 385 (415)
++++++ +++.+ .+++||++|+|+ ++.|.+|+|+++++|+++++|.+|+++++ +.||++
T Consensus 3 ~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~-------------------~~v~~~ 63 (80)
T cd05824 3 DPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWN-------------------STVGRW 63 (80)
T ss_pred CCCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCC-------------------CEECCC
Confidence 455556 55656 478999999998 79999999999999999999999999999 899999
Q ss_pred CEEe-eeEECCCeEEcC
Q 014953 386 TKIK-YEQLKPICHIVE 401 (415)
Q Consensus 386 ~~i~-~~~i~~~~~i~~ 401 (415)
+.+. +++|+++++|+.
T Consensus 64 ~~~~~~~~ig~~~~i~~ 80 (80)
T cd05824 64 TRLENVTVLGDDVTIKD 80 (80)
T ss_pred cEEecCEEECCceEECC
Confidence 9999 599999998874
|
It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.2e-11 Score=107.29 Aligned_cols=117 Identities=21% Similarity=0.193 Sum_probs=74.2
Q ss_pred cCCCCCccccCccCCCeee-cCCccccceECCCCEEc-ceEEeeeEEccCcEECCCcEEe-ecEEeCCccccchhHH---
Q 014953 296 YDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLK-DTMMLGADFYETDAEV--- 369 (415)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~i-~~~~i~~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~-~sii~~~~~~~~~~~~--- 369 (415)
+++.+.+.+.+.++++++| +++.|.++.||++|.|+ ++.+.+|+|+++|.|+++++|. ++++.++++++.++.+
T Consensus 24 I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~s 103 (193)
T cd03353 24 IDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKKS 103 (193)
T ss_pred ECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCCCEECCcEEEecc
Confidence 3444444555555666666 55666666777777776 4666677777766666666665 3555444444333221
Q ss_pred ----------------------------------------HhhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCcc
Q 014953 370 ----------------------------------------ASLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSST 408 (415)
Q Consensus 370 ----------------------------------------~~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~ 408 (415)
.+.++++ +.||.++.+. ++.|++++.|++++.+.+.
T Consensus 104 ~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~vigd~---~~ig~~~~i~~~~~Ig~~~~i~~gs~V~~~ 180 (193)
T cd03353 104 TIGEGSKANHLSYLGDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDN---VFIGSNSQLVAPVTIGDGATIAAGSTITKD 180 (193)
T ss_pred eEcCCCEecccceecccEECCCCEEcCceEEeccCCccccCCEECCC---eEEccCCEEeCCcEECCCcEECCCCEEccc
Confidence 1123333 6666666665 6889999999999999999
Q ss_pred ccccccC
Q 014953 409 ISRFSLL 415 (415)
Q Consensus 409 ~~~~~~~ 415 (415)
+-+++++
T Consensus 181 v~~~~~v 187 (193)
T cd03353 181 VPPGALA 187 (193)
T ss_pred cCCCCEE
Confidence 9888864
|
It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. |
| >TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.7e-11 Score=106.97 Aligned_cols=94 Identities=11% Similarity=0.065 Sum_probs=56.8
Q ss_pred ccccceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHH--------------------------
Q 014953 318 KIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVA-------------------------- 370 (415)
Q Consensus 318 ~i~~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~-------------------------- 370 (415)
.+.++.||++|+|+ ++.|.+|+||++|.|++++.|.+++|++++.|..++.+.
T Consensus 16 ~i~~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~~~h~~~~~s~~~~~~~~~~~~~~~~ 95 (204)
T TIGR03308 16 ELTESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINATNHPMERPTLHHFTYRAAMYFDDAS 95 (204)
T ss_pred EEeccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEECCCCCCCCccccccccccccccccccc
Confidence 33444555555555 355555555555555555555555555555544444332
Q ss_pred -------------hhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 371 -------------SLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 371 -------------~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
+.++++ |.||.+|.|. ++.||+++.|++++.+.+.+-++++
T Consensus 96 ~~~~~~~~~~~~~~~Ig~~---~~Ig~~~~I~~gv~Ig~~~~I~~gs~v~~~i~~~~~ 150 (204)
T TIGR03308 96 DDADFFAWRRAKRVTIGHD---VWIGHGAVILPGVTIGNGAVIAAGAVVTKDVAPYTI 150 (204)
T ss_pred ccccccccccCCCeEECCC---CEECCCCEECCCCEECCCCEECCCCEECCCCCCCcE
Confidence 233444 6777777776 8888888888888888888877765
|
This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein. |
| >cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.3e-11 Score=100.42 Aligned_cols=94 Identities=12% Similarity=0.097 Sum_probs=62.4
Q ss_pred ccCCCCCccccCccCCCeee-cCCccc----cceECCCCEEc-ceEE-----eeeEEccCcEECCCcEEeecEEeCCccc
Q 014953 295 FYDATKPIYTSRRNLPPSKI-DDSKIV----DSIISHGSFIT-SSFI-----EHSVVGIRSRINANVHLKDTMMLGADFY 363 (415)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~i-~~~~i~----~~~ig~~~~I~-~~~i-----~~svig~~~~ig~~~~i~~sii~~~~~~ 363 (415)
++++++.+...+.+++++.+ +++.|. .+.||++|.|+ ++.| .+|+||++|.|++++.|.+++|+++
T Consensus 8 ~i~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~--- 84 (155)
T cd04745 8 FVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIGRN--- 84 (155)
T ss_pred EECCCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEECCC---
Confidence 34445555555556666666 555554 36777777777 5766 4578888888888888888877777
Q ss_pred cchhHHHhhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCc
Q 014953 364 ETDAEVASLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSS 407 (415)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~ 407 (415)
|.||.+|.|. +++|++++.|++++.+.+
T Consensus 85 ----------------~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~ 113 (155)
T cd04745 85 ----------------ALVGMNAVVMDGAVIGEESIVGAMAFVKA 113 (155)
T ss_pred ----------------CEECCCCEEeCCCEECCCCEECCCCEeCC
Confidence 6667766665 566666666666665544
|
coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity. |
| >COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl] | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.9e-11 Score=107.41 Aligned_cols=33 Identities=27% Similarity=0.278 Sum_probs=20.3
Q ss_pred hhhCCCc-ceEeCCCCEEe-eeEECCCeEEcCCcc
Q 014953 372 LLAEGRV-PVGIGENTKIK-YEQLKPICHIVETKY 404 (415)
Q Consensus 372 ~~~~~~~-~~~Ig~~~~i~-~~~i~~~~~i~~~~~ 404 (415)
.|.++.. .+.||+|+.|+ .+.|++||+||+++-
T Consensus 216 ~Idrga~~dTvIg~~~kIdN~vqIaHnv~IG~~~~ 250 (338)
T COG1044 216 TIDRGALDDTVIGEGVKIDNLVQIGHNVRIGEHCI 250 (338)
T ss_pred eeccccccCceecCCcEEcceeEEccccEECCCcE
Confidence 3344433 35566777776 577777777777664
|
|
| >TIGR02287 PaaY phenylacetic acid degradation protein PaaY | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.3e-11 Score=102.26 Aligned_cols=102 Identities=14% Similarity=0.154 Sum_probs=63.4
Q ss_pred ccCCCCCccccCccCCCeee-cCCccc----cceECCCCEEc-ceEE-----eeeEEccCcEECCCcEEeecEEeCCccc
Q 014953 295 FYDATKPIYTSRRNLPPSKI-DDSKIV----DSIISHGSFIT-SSFI-----EHSVVGIRSRINANVHLKDTMMLGADFY 363 (415)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~i-~~~~i~----~~~ig~~~~I~-~~~i-----~~svig~~~~ig~~~~i~~sii~~~~~~ 363 (415)
++++++.+...+.+++++.| .++.|. .++||++|.|+ ++.| .+|+||++|+|++++.|.+|+|++++.|
T Consensus 16 ~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg~~~~I 95 (192)
T TIGR02287 16 YVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVGRNALV 95 (192)
T ss_pred EECCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEECCCCEE
Confidence 44555555555556666666 566654 35677788887 5776 4689999999999999999999888555
Q ss_pred cchhHHHhhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCc
Q 014953 364 ETDAEVASLLAEGRVPVGIGENTKIK-YEQLKPICHIVETK 403 (415)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~ 403 (415)
+.++.+. ++ +.||++|.|. +|++.++..|++++
T Consensus 96 G~ga~I~----~g---~~IG~~s~Vgags~V~~~~~ip~~~ 129 (192)
T TIGR02287 96 GMNAVVM----DG---AVIGENSIVAASAFVKAGAEMPAQY 129 (192)
T ss_pred CCCcccC----CC---eEECCCCEEcCCCEECCCCEECCCe
Confidence 5543331 12 3444444444 44444444444443
|
Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator. |
| >cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.4e-10 Score=86.79 Aligned_cols=68 Identities=15% Similarity=0.241 Sum_probs=57.4
Q ss_pred eECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEeeeEECCCeEEcC
Q 014953 323 IISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKYEQLKPICHIVE 401 (415)
Q Consensus 323 ~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~~i~~~~~i~~ 401 (415)
+||++|.|+ ++.|.+|+|+++|.|+++++|.+|+++++ +.||.+|.+.++++++++.|++
T Consensus 1 ~ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~-------------------~~ig~~~~l~~svi~~~~~i~~ 61 (81)
T cd04652 1 LVGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDN-------------------VTIEDGCTLENCIIGNGAVIGE 61 (81)
T ss_pred CccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCC-------------------CEECCCCEEeccEEeCCCEECC
Confidence 367888887 57778899999999999999999999988 8899999999999999999988
Q ss_pred CcccCccc
Q 014953 402 TKYDSSTI 409 (415)
Q Consensus 402 ~~~~~~~~ 409 (415)
++....+|
T Consensus 62 ~~~v~~~i 69 (81)
T cd04652 62 KCKLKDCL 69 (81)
T ss_pred CCEEccCE
Confidence 88765544
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.2e-10 Score=101.36 Aligned_cols=113 Identities=24% Similarity=0.312 Sum_probs=80.2
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCccc
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (415)
+.+|.+||||||.++|| .+|+|++++|+ ||++|+++.|....- .++|+...+.+. +.. +
T Consensus 2 ~~~~~~vILAGG~srRm------~dK~l~~~~g~-~lie~v~~~L~~~~~-~vvi~~~~~~~~---~~~----------~ 60 (192)
T COG0746 2 MTPMTGVILAGGKSRRM------RDKALLPLNGR-PLIEHVIDRLRPQVD-VVVISANRNQGR---YAE----------F 60 (192)
T ss_pred CCCceEEEecCCccccc------cccccceeCCe-EHHHHHHHHhcccCC-EEEEeCCCchhh---hhc----------c
Confidence 46789999999999999 79999999999 999999999988754 555555444331 111 1
Q ss_pred CCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHHHHHcC
Q 014953 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSG 156 (415)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~h~~~~ 156 (415)
+ ++++.+... . .|...+++.++.... .+.+++++||+ +...+ +..+++...+.+
T Consensus 61 g---~~vv~D~~~-------~-~GPL~Gi~~al~~~~------~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~ 116 (192)
T COG0746 61 G---LPVVPDELP-------G-FGPLAGILAALRHFG------TEWVLVLPCDMPFIPPELVERLLSAFKQTG 116 (192)
T ss_pred C---CceeecCCC-------C-CCCHHHHHHHHHhCC------CCeEEEEecCCCCCCHHHHHHHHHhhcccC
Confidence 1 234433322 1 289999999988765 48999999999 55555 455555544433
|
|
| >TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.7e-10 Score=107.83 Aligned_cols=101 Identities=18% Similarity=0.055 Sum_probs=56.1
Q ss_pred eEEecCCHHHHHHHHHhhcCCC-CCCCccCCCCCccccCccCCCeee-cCCccc-cceECCCCEEc-ceEE-eeeEEccC
Q 014953 269 YWEDIGTIRSFFEANLALTAHP-PMFSFYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFI-EHSVVGIR 343 (415)
Q Consensus 269 ~~~di~t~~~y~~an~~~l~~~-~~~~~~~~~~~~~~~~~i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i-~~svig~~ 343 (415)
.+.-+++|..-+..-..++... .....++|++.+.+++.+++++.| +++.|. ++.||++|+|+ ++.| .+++||++
T Consensus 66 ~~~~v~~p~~~~~~~~~~~~~~~~~~~~i~p~a~i~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~ 145 (324)
T TIGR01853 66 AALVVKDPYLAFAKVAELFDPPPKREAGIHPTAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDG 145 (324)
T ss_pred eEEEECCHHHHHHHHHHHhcccccccCCcCCCCEeCCCcEECCCCEECCCcEEccCcEECCcEEECCCCEECCcceeCCC
Confidence 3566788876555444444332 222345666666666666666655 444443 45555555555 3444 35666666
Q ss_pred cEECCCcEEe-ecEEeCCccccchhHH
Q 014953 344 SRINANVHLK-DTMMLGADFYETDAEV 369 (415)
Q Consensus 344 ~~ig~~~~i~-~sii~~~~~~~~~~~~ 369 (415)
|.|++++.|. +++|+++++|.+++.+
T Consensus 146 ~~I~~~~~I~~~~~IG~~~~I~~~~vI 172 (324)
T TIGR01853 146 SRIHPNVVIYERVQLGKNVIIHSGAVI 172 (324)
T ss_pred ceECCCcEECCCCEECCCCEECCCcEE
Confidence 6666666665 4555555555555544
|
This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate). |
| >cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.9e-09 Score=98.00 Aligned_cols=217 Identities=17% Similarity=0.195 Sum_probs=126.5
Q ss_pred EEEEEcCCCCCcccccccCCcccceeeC---Ccceeehhehhhhhc--------cCCcEEEEEcccChhHHHHHHHhhcc
Q 014953 10 AAVILGGGAGTRLYPLTKQRAKPAVPIG---GAYRLIDVPMSNCIN--------SGINKVYILTQYNSASLNRHLARAYN 78 (415)
Q Consensus 10 ~aVILAaG~g~Rl~plt~~~pK~llpv~---g~~pli~~~l~~l~~--------~gi~~I~vv~~~~~~~i~~~l~~~~~ 78 (415)
-+|+||||.||||+ .+.||+|+||+ |+ |+++|+++++.+ .+|..+++...+.++.+.+++.+..
T Consensus 2 a~viLaGG~GtRLg---~~~PK~~~~i~~~~gk-~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~~- 76 (266)
T cd04180 2 AVVLLAGGLGTRLG---KDGPKSSTDVGLPSGQ-CFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKIN- 76 (266)
T ss_pred EEEEECCCCccccC---CCCCceeeeecCCCCC-cHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHcC-
Confidence 58999999999996 78999999999 99 999999999986 3467777777788889999998643
Q ss_pred CCCC--cccCCceEEEecCccC--CCCCC--CccccchHHHHHHhh--hhhcCCCCCCcCeEEEEcCCee-cccChHHHH
Q 014953 79 YGSG--VTFGDGCVEVLAATQT--PGEAG--KRWFQGTADAVRQFH--WLFEDPRNKVIEDVLILSGDHL-YRMDYMDFV 149 (415)
Q Consensus 79 ~~~~--~~~~~~~v~i~~~~~~--~~~~~--~~~~~Gt~~al~~~~--~~i~~~~~~~~~~~lv~~gD~i-~~~~l~~~l 149 (415)
+..+ ..|....+..+..... ..+.. ...+.|.|+.+.... ..++.....+.+.+.+.+.|.+ ....--.++
T Consensus 77 ~~~~~v~~f~Q~~~P~~~~~~~~~~~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~v~DP~~l 156 (266)
T cd04180 77 QKNSYVITFMQGKLPLKNDDDARDPHNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKVADPLFI 156 (266)
T ss_pred CCCCceEEEEeCCceEEeCCCCcccCCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCccccCHHHH
Confidence 1111 1111111111111000 00001 123557777665332 1222111233678889999984 444233467
Q ss_pred HHHHHcCCcEEEEEEEcCCCcCCcccEEEECCCCC--eEEEEEcCCcccccccc-cccccccccccccccccceeeeeEE
Q 014953 150 QNHRQSGADITISCLPMDDSRASDFGLMKINNEGR--VLSFSEKPKGKDLKAMA-VDTTVLGLSKQEAEEKPYIASMGVY 226 (415)
Q Consensus 150 ~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~--v~~~~ek~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~Giy 226 (415)
-.+..+++++.+-+.+.+.. .+.-|++...++|+ ++++.+-|......... .+. ......+....++...
T Consensus 157 G~~~~~~~~~~~kvv~K~~~-d~k~G~~~~~~~g~~~~vEyse~~~~~~~~~~~~~~~------~~~~~~~~~~~n~~~~ 229 (266)
T cd04180 157 GIAIQNRKAINQKVVPKTRN-EESGGYRIANINGRVQLLEYDQIKKLLKQKMVNNQIP------KDIDDAPFFLFNTNNL 229 (266)
T ss_pred HHHHHcCCCEEEEEEECCCC-CCeEEEEEEecCCCEEEEEeccCCHHHHhccccccCc------CCCCceeeccceEEEE
Confidence 77778888888777665542 23346555432354 55665544321110000 000 0011124567889999
Q ss_pred EEeHHHHHHHHh
Q 014953 227 LFKKEILLNLLR 238 (415)
Q Consensus 227 i~~~~~l~~~l~ 238 (415)
+|+-+++++.++
T Consensus 230 ~~~l~~l~~~~~ 241 (266)
T cd04180 230 INFLVEFKDRVD 241 (266)
T ss_pred EEEHHHHHHHHH
Confidence 999999987764
|
This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o |
| >cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.2e-09 Score=102.98 Aligned_cols=217 Identities=19% Similarity=0.288 Sum_probs=127.1
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeC---CcceeehhehhhhhccC------------CcEEEEEcc-cChhHH
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIG---GAYRLIDVPMSNCINSG------------INKVYILTQ-YNSASL 69 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~---g~~pli~~~l~~l~~~g------------i~~I~vv~~-~~~~~i 69 (415)
..++.+||||||.|||| +...||+|+||+ |+ |++++.++++.+.+ + .+++.++ +.++.+
T Consensus 13 ~~~va~viLaGG~GTRL---g~~~PK~l~pv~~~~~k-~ll~~~~e~l~~l~~~~~~~~~~~~~i-p~~imtS~~t~~~t 87 (323)
T cd04193 13 EGKVAVLLLAGGQGTRL---GFDGPKGMFPVGLPSKK-SLFQLQAERILKLQELAGEASGKKVPI-PWYIMTSEATHEET 87 (323)
T ss_pred cCCEEEEEECCCccccc---CCCCCeEEEEecCCCCC-cHHHHHHHHHHHHHHHHhhccCCCCCc-eEEEEcChhHhHHH
Confidence 35789999999999999 588999999998 68 99999999998742 3 4567777 778889
Q ss_pred HHHHHhhccCCCC---cc-cCCceEEEecCccCC--CCCC--CccccchHHHHHHhhh--hhcCCCCCCcCeEEEEcCCe
Q 014953 70 NRHLARAYNYGSG---VT-FGDGCVEVLAATQTP--GEAG--KRWFQGTADAVRQFHW--LFEDPRNKVIEDVLILSGDH 139 (415)
Q Consensus 70 ~~~l~~~~~~~~~---~~-~~~~~v~i~~~~~~~--~~~~--~~~~~Gt~~al~~~~~--~i~~~~~~~~~~~lv~~gD~ 139 (415)
.+++.+...|+-. .. |....+..+...... .+.. .-.+.|.|+-...... .+++....+.+.+.+.+.|.
T Consensus 88 ~~~~~~~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN 167 (323)
T cd04193 88 RKFFKENNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDN 167 (323)
T ss_pred HHHHHhCCcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCc
Confidence 9999864323211 00 000001111100000 0000 1234577766554322 22222223468999999999
Q ss_pred e-cccChHHHHHHHHHcCCcEEEEEEEcCCCcCCcccEEEE-CCCCCeEEEEEcCCcccccccccccccccccccccccc
Q 014953 140 L-YRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKI-NNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEK 217 (415)
Q Consensus 140 i-~~~~l~~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~-d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (415)
+ ...---.++-++.++++++.+-+.+...+ .+.-|.+.. |..-+++++.+-|....... .......
T Consensus 168 ~L~~~~Dp~~lG~~~~~~~~~~~kvv~k~~~-~ekvG~l~~~~g~~~vvEysel~~~~~~~~-----------~~~g~l~ 235 (323)
T cd04193 168 ILVKVADPVFIGFCISKGADVGAKVVRKRYP-TEKVGVVVLVDGKPQVVEYSEISDELAEKR-----------DADGELQ 235 (323)
T ss_pred ccccccCHHHhHHHHHcCCceEEEEEECCCC-CCceeEEEEECCeEEEEEeecCCHHHHhcc-----------CcCCcEe
Confidence 4 43333467888889999998877665532 244555554 32224566666554322100 0001111
Q ss_pred cceeeeeEEEEeHHHHHHHHhh
Q 014953 218 PYIASMGVYLFKKEILLNLLRW 239 (415)
Q Consensus 218 ~~l~~~Giyi~~~~~l~~~l~~ 239 (415)
.+..++.+.+|+-++++++.+.
T Consensus 236 f~~~ni~~~~fsl~fl~~~~~~ 257 (323)
T cd04193 236 YNAGNIANHFFSLDFLEKAAEM 257 (323)
T ss_pred cccchHhhheeCHHHHHHHHhh
Confidence 2344556778998888877643
|
UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase. |
| >cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.4e-10 Score=96.87 Aligned_cols=90 Identities=13% Similarity=0.145 Sum_probs=69.3
Q ss_pred CCCCCccccCccCCCeee-cCCccc-cceECCCCEEc-ceEEe-eeEEccCcEECCCcEEeecEEeCCccccchhHHHhh
Q 014953 297 DATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASL 372 (415)
Q Consensus 297 ~~~~~~~~~~~i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i~-~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~ 372 (415)
.+...+.+.+.+++++.+ +++.+. +++||++|.|+ ++.|. +++||++|.|+++++|.+|+++++
T Consensus 9 ~~~~~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~------------ 76 (163)
T cd05636 9 EEGVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDG------------ 76 (163)
T ss_pred CCCCEECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCC------------
Confidence 344445555566666666 566554 68899999998 68886 699999999999999999999999
Q ss_pred hhCCCcceEeCCCCEEeeeEECCCeEEcCCccc
Q 014953 373 LAEGRVPVGIGENTKIKYEQLKPICHIVETKYD 405 (415)
Q Consensus 373 ~~~~~~~~~Ig~~~~i~~~~i~~~~~i~~~~~~ 405 (415)
+.|+.++.+.+++|+++++|++++..
T Consensus 77 -------~~I~~~~~i~~siIg~~~~I~~~~~i 102 (163)
T cd05636 77 -------TKVPHLNYVGDSVLGENVNLGAGTIT 102 (163)
T ss_pred -------CEeccCCEEecCEECCCCEECCCcEE
Confidence 67777777777777777777777643
|
Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.7e-10 Score=84.08 Aligned_cols=66 Identities=24% Similarity=0.349 Sum_probs=58.3
Q ss_pred eECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEeeeEECCCeEEcC
Q 014953 323 IISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKYEQLKPICHIVE 401 (415)
Q Consensus 323 ~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~~i~~~~~i~~ 401 (415)
+||++|.|+ ++.+.+|+||++|.|++++.|.+|+++++ +.||++|.+.+++|++++.|++
T Consensus 1 ~ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~-------------------~~i~~~~~i~~svv~~~~~i~~ 61 (79)
T cd03356 1 LIGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDN-------------------VTIGANSVIVDSIIGDNAVIGE 61 (79)
T ss_pred CccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCC-------------------CEECCCCEEECCEECCCCEECC
Confidence 478889998 68888899999999999999999999999 8899999999999999999988
Q ss_pred CcccCc
Q 014953 402 TKYDSS 407 (415)
Q Consensus 402 ~~~~~~ 407 (415)
+.....
T Consensus 62 ~~~i~~ 67 (79)
T cd03356 62 NVRVVN 67 (79)
T ss_pred CCEEcC
Confidence 876543
|
Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.8e-10 Score=84.03 Aligned_cols=64 Identities=22% Similarity=0.272 Sum_probs=54.0
Q ss_pred eECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEeeeEECCCeEEcC
Q 014953 323 IISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKYEQLKPICHIVE 401 (415)
Q Consensus 323 ~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~~i~~~~~i~~ 401 (415)
+||++|.|+ ++.|.+|+|+++|.|+++++|.+|+++++ +.||++++|.+++|+++++|++
T Consensus 1 ~ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~-------------------~~i~~~~~i~~~~i~~~~~i~~ 61 (79)
T cd05787 1 VIGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDD-------------------VTIEDGCTIHHSIVADGAVIGK 61 (79)
T ss_pred CccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCC-------------------CEECCCCEEeCcEEcCCCEECC
Confidence 468888888 68888999999999999999999999999 7788888777777777777777
Q ss_pred Cccc
Q 014953 402 TKYD 405 (415)
Q Consensus 402 ~~~~ 405 (415)
++..
T Consensus 62 ~~~i 65 (79)
T cd05787 62 GCTI 65 (79)
T ss_pred CCEE
Confidence 7654
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.2e-10 Score=107.58 Aligned_cols=74 Identities=22% Similarity=0.170 Sum_probs=55.4
Q ss_pred cCCCCCccccCccCCCeee-cCCccccceECCCCEEcc-eEEeeeEEccCcEECCCcEEee-cEEeCCccccchhHH
Q 014953 296 YDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFITS-SFIEHSVVGIRSRINANVHLKD-TMMLGADFYETDAEV 369 (415)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~i-~~~~i~~~~ig~~~~I~~-~~i~~svig~~~~ig~~~~i~~-sii~~~~~~~~~~~~ 369 (415)
++|+..+...+.|+.++.| ++|.|+||.||+|+.|.. +.+++|.||++|.|||.++|+. |.|.+++||++=+++
T Consensus 277 I~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFVEv 353 (460)
T COG1207 277 IEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNFVEV 353 (460)
T ss_pred EecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCcCcccCCCeEeeeEEE
Confidence 3444444445555556667 678888999999999985 8999999999999999999987 777777776544433
|
|
| >TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.3e-09 Score=96.53 Aligned_cols=126 Identities=17% Similarity=0.082 Sum_probs=82.8
Q ss_pred eEEecCCHHHHHHHHHhhcCCC-CCCCccCCCCCccccCccCCCeee-cCCccc-cceECCCCEEc-ceEEe-eeEEccC
Q 014953 269 YWEDIGTIRSFFEANLALTAHP-PMFSFYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-HSVVGIR 343 (415)
Q Consensus 269 ~~~di~t~~~y~~an~~~l~~~-~~~~~~~~~~~~~~~~~i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i~-~svig~~ 343 (415)
++..++.+....+....+.+.. ....++.+.+.+.+.+.+++++.+ +++.|. ++.||++|.|+ ++.|. ++.||++
T Consensus 62 ~iiai~~~~~~~~i~~~l~~~g~~~~~~i~~~a~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~ 141 (201)
T TIGR03570 62 LVVAIGDNKLRRRLFEKLKAKGYRFATLIHPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDY 141 (201)
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCcceEEecCCeEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCC
Confidence 4556666665555555444332 222344555555555666666666 555554 46777777776 56663 5777777
Q ss_pred cEECCCcEEee-cEEeCCccccchhHHHhhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCccccccc
Q 014953 344 SRINANVHLKD-TMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSSTISRFS 413 (415)
Q Consensus 344 ~~ig~~~~i~~-sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~ 413 (415)
|+|++++.|.+ +.++++ |.||+++.+. ++.|++++.|++++.+.+.+-.++
T Consensus 142 ~~i~~~~~i~~~~~ig~~-------------------~~ig~~~~v~~~~~i~~~~~i~~~~~v~~~~~~~~ 194 (201)
T TIGR03570 142 VHIAPGVTLSGGVVIGEG-------------------VFIGAGATIIQGVTIGAGAIVGAGAVVTKDIPDGG 194 (201)
T ss_pred CEECCCCEEeCCcEECCC-------------------CEECCCCEEeCCCEECCCCEECCCCEECCcCCCCC
Confidence 77777777763 555555 8899999987 899999999999998777665554
|
These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. |
| >PLN02472 uncharacterized protein | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.1e-10 Score=101.67 Aligned_cols=92 Identities=7% Similarity=0.026 Sum_probs=57.6
Q ss_pred cCCCCCccccCccCCCeee-cCCccc----cceECCCCEEc-ceEEe-----------eeEEccCcEECCCcEEeecEEe
Q 014953 296 YDATKPIYTSRRNLPPSKI-DDSKIV----DSIISHGSFIT-SSFIE-----------HSVVGIRSRINANVHLKDTMML 358 (415)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~i-~~~~i~----~~~ig~~~~I~-~~~i~-----------~svig~~~~ig~~~~i~~sii~ 358 (415)
+.+.+.+...+.++.++.| .++.++ ...||++|.|+ +|.|. +++||++|+||+++.|.+|+|+
T Consensus 68 I~p~a~i~G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L~~~~Ig 147 (246)
T PLN02472 68 VAPNVVLAGQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLRSCTIE 147 (246)
T ss_pred ECCCCEEecCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEECCeEEc
Confidence 3444444444455555555 444443 24566666666 46652 6899999999999999999999
Q ss_pred CCccccchhHHHhhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccC
Q 014953 359 GADFYETDAEVASLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDS 406 (415)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~ 406 (415)
++ |.||.+|.|. +++|++++.|++++.+.
T Consensus 148 d~-------------------v~IG~~svI~~gavIg~~~~Ig~gsvV~ 177 (246)
T PLN02472 148 PE-------------------CIIGQHSILMEGSLVETHSILEAGSVLP 177 (246)
T ss_pred CC-------------------CEECCCCEECCCCEECCCCEECCCCEEC
Confidence 99 5555555554 55555555555555433
|
|
| >cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.2e-10 Score=93.66 Aligned_cols=93 Identities=12% Similarity=0.002 Sum_probs=64.4
Q ss_pred ccCCCCCccccCccCCCeee-cCCcccc----ceECCCCEEc-ceEEee-----eEEccCcEECCCcEEeecEEeCCccc
Q 014953 295 FYDATKPIYTSRRNLPPSKI-DDSKIVD----SIISHGSFIT-SSFIEH-----SVVGIRSRINANVHLKDTMMLGADFY 363 (415)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~i-~~~~i~~----~~ig~~~~I~-~~~i~~-----svig~~~~ig~~~~i~~sii~~~~~~ 363 (415)
++++++.+.+.+.+++++.| +++.|.. ++||++|.|+ ++.|.. ++||+++.|++++++.+++|+++
T Consensus 8 ~i~~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~--- 84 (154)
T cd04650 8 YVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGNY--- 84 (154)
T ss_pred EECCCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECCC---
Confidence 45566666666667777777 5666653 4788888887 577754 78888888888888888888888
Q ss_pred cchhHHHhhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccC
Q 014953 364 ETDAEVASLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDS 406 (415)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~ 406 (415)
|.||.++.+. +++|++++.|++++.+.
T Consensus 85 ----------------~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~ 112 (154)
T cd04650 85 ----------------VIVGMGAILLNGAKIGDHVIIGAGAVVT 112 (154)
T ss_pred ----------------CEEcCCCEEeCCCEECCCCEECCCCEEC
Confidence 5666666664 56666666666655444
|
It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group. |
| >cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.1e-10 Score=94.70 Aligned_cols=72 Identities=13% Similarity=0.169 Sum_probs=48.2
Q ss_pred ccCCCCCccccCccCCCeee-cCCccc----cceECCCCEEc-ceEEee-----------eEEccCcEECCCcEEeecEE
Q 014953 295 FYDATKPIYTSRRNLPPSKI-DDSKIV----DSIISHGSFIT-SSFIEH-----------SVVGIRSRINANVHLKDTMM 357 (415)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~i-~~~~i~----~~~ig~~~~I~-~~~i~~-----------svig~~~~ig~~~~i~~sii 357 (415)
++++.+.+.+...+++++.| +++.+. .++||++|.|+ ++.|.+ +.||++|.++.++.|.+++|
T Consensus 7 ~I~~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~~~I 86 (164)
T cd04646 7 VVCQESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEALKI 86 (164)
T ss_pred EECCCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEeeEE
Confidence 44555555555566666666 556553 36788888887 677754 35778888888888888888
Q ss_pred eCCccccch
Q 014953 358 LGADFYETD 366 (415)
Q Consensus 358 ~~~~~~~~~ 366 (415)
++++.++.+
T Consensus 87 Gd~~~Ig~~ 95 (164)
T cd04646 87 GNNNVFESK 95 (164)
T ss_pred CCCCEEeCC
Confidence 888544444
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PLN02296 carbonate dehydratase | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.6e-10 Score=102.19 Aligned_cols=72 Identities=14% Similarity=0.178 Sum_probs=47.8
Q ss_pred ccCCCCCccccCccCCCeee-cCCccc----cceECCCCEEc-ceEEe-----------eeEEccCcEECCCcEEeecEE
Q 014953 295 FYDATKPIYTSRRNLPPSKI-DDSKIV----DSIISHGSFIT-SSFIE-----------HSVVGIRSRINANVHLKDTMM 357 (415)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~i-~~~~i~----~~~ig~~~~I~-~~~i~-----------~svig~~~~ig~~~~i~~sii 357 (415)
++.+++.+...+.|++++.| .++.|. ++.||++|.|+ ++.|. +|+||++|+||+++.|.+|+|
T Consensus 60 ~I~p~A~V~G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI~g~~I 139 (269)
T PLN02296 60 FVAPSASVIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVLHGCTV 139 (269)
T ss_pred EECCCcEEEcceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCceecCCEE
Confidence 44555555555556666666 556554 24678888887 56663 578888888888888888888
Q ss_pred eCCccccch
Q 014953 358 LGADFYETD 366 (415)
Q Consensus 358 ~~~~~~~~~ 366 (415)
++++.|+.+
T Consensus 140 gd~v~IG~g 148 (269)
T PLN02296 140 EDEAFVGMG 148 (269)
T ss_pred CCCcEECCC
Confidence 888444433
|
|
| >cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.5e-09 Score=94.11 Aligned_cols=101 Identities=17% Similarity=0.088 Sum_probs=65.8
Q ss_pred ccCCCCCccccCccCCCeee-cCCccc-cceECCCCEEc-ceEE-eeeEEccCcEECCCcEEee-cEEeCCccccchhHH
Q 014953 295 FYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKD-TMMLGADFYETDAEV 369 (415)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i-~~svig~~~~ig~~~~i~~-sii~~~~~~~~~~~~ 369 (415)
++++...+...+.++.++.+ +++.|. ++.||++|+|+ ++.| .++.||++|.|++++.+.+ +.|+++
T Consensus 86 ~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~--------- 156 (197)
T cd03360 86 LIHPSAVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEG--------- 156 (197)
T ss_pred EECCCeEECCCCEECCCCEEcCCCEECCCCEECCCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCC---------
Confidence 34444444444445555555 444443 55566666665 4555 3466666666666666654 555555
Q ss_pred HhhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 370 ASLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 370 ~~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
|.||.+|.+. ++.|++++.|++++.+.+.+.++++
T Consensus 157 ----------~~ig~~~~v~~~~~ig~~~~v~~~~~v~~~~~~~~~ 192 (197)
T cd03360 157 ----------AFIGAGATIIQGVTIGAGAIIGAGAVVTKDVPDGSV 192 (197)
T ss_pred ----------CEECCCCEEcCCCEECCCCEECCCCEEcCCCCCCCE
Confidence 8899999997 7999999999999998888776654
|
The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. |
| >cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.7e-10 Score=97.85 Aligned_cols=89 Identities=19% Similarity=0.185 Sum_probs=65.3
Q ss_pred cCccCCCeee-cCCccc-cceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHH--hhhhCCCcc
Q 014953 305 SRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVA--SLLAEGRVP 379 (415)
Q Consensus 305 ~~~i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~--~~~~~~~~~ 379 (415)
.+.+++++.+ +++.|. ++.||+||.|+ ++.|.++.||++|.|++++.|.++++++++.++.++.+. +.++++
T Consensus 15 ~v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~--- 91 (193)
T cd03353 15 DVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEG--- 91 (193)
T ss_pred CeEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCC---
Confidence 3445555555 455554 78899999998 699999999999999999999999999998888887764 455555
Q ss_pred eEeCCCCEEeeeEECCC
Q 014953 380 VGIGENTKIKYEQLKPI 396 (415)
Q Consensus 380 ~~Ig~~~~i~~~~i~~~ 396 (415)
+.||+++.+.+++|+++
T Consensus 92 ~~Ig~~~~i~~s~ig~~ 108 (193)
T cd03353 92 VHIGNFVEIKKSTIGEG 108 (193)
T ss_pred CEECCcEEEecceEcCC
Confidence 55555555444444333
|
It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. |
| >cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc | Back alignment and domain information |
|---|
Probab=99.02 E-value=7.6e-10 Score=101.70 Aligned_cols=74 Identities=12% Similarity=0.167 Sum_probs=46.7
Q ss_pred eEEccCcEECCCcEE-eecEEeCCccccchhHHH--hhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCccccccc
Q 014953 338 SVVGIRSRINANVHL-KDTMMLGADFYETDAEVA--SLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSSTISRFS 413 (415)
Q Consensus 338 svig~~~~ig~~~~i-~~sii~~~~~~~~~~~~~--~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~ 413 (415)
++||++|.|++++.| .+|+|++++.+..++.+. +.++++ |.||.++.|. ++.||+++.|+.++.+.+.|-+++
T Consensus 103 ~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~---~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~~i~~~~ 179 (254)
T cd03351 103 TRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDY---AIIGGLSAVHQFCRIGRHAMVGGGSGVVQDVPPYV 179 (254)
T ss_pred eEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCC---cEECCcceECCCcEECCCCEECcCCEEeeecCCCe
Confidence 555555555555555 345555555555554443 344555 6666666666 788888888888888877776665
Q ss_pred c
Q 014953 414 L 414 (415)
Q Consensus 414 ~ 414 (415)
+
T Consensus 180 ~ 180 (254)
T cd03351 180 I 180 (254)
T ss_pred E
Confidence 4
|
It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. |
| >cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.2e-10 Score=89.21 Aligned_cols=90 Identities=17% Similarity=0.166 Sum_probs=64.3
Q ss_pred cceECCCCEEc-ceEE-eeeEEccCcEECCCcEEeecEEeCCccccchhHHH-hhhhCCCcceEeCCCCEEe-eeEECCC
Q 014953 321 DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVA-SLLAEGRVPVGIGENTKIK-YEQLKPI 396 (415)
Q Consensus 321 ~~~ig~~~~I~-~~~i-~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~-~~~~~~~~~~~Ig~~~~i~-~~~i~~~ 396 (415)
++.||++|.|+ ++.| .+++||++|.|++++.+.++.+.+.. +..++.+. +.++++ |.||.++.+. ++.|+++
T Consensus 16 ~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~-~~~~~~~~~~~Ig~~---~~Ig~~~~v~~~~~ig~~ 91 (119)
T cd03358 16 DVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRSK-IYRKWELKGTTVKRG---ASIGANATILPGVTIGEY 91 (119)
T ss_pred CcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCCccc-cccccccCCcEECCC---cEECcCCEEeCCcEECCC
Confidence 67778888887 5666 47888888888888888776554432 22222222 345555 8888888887 7999999
Q ss_pred eEEcCCcccCcccccccc
Q 014953 397 CHIVETKYDSSTISRFSL 414 (415)
Q Consensus 397 ~~i~~~~~~~~~~~~~~~ 414 (415)
+.|++++...+.+..+++
T Consensus 92 ~~i~~~~~v~~~i~~~~~ 109 (119)
T cd03358 92 ALVGAGAVVTKDVPPYAL 109 (119)
T ss_pred CEEccCCEEeCcCCCCeE
Confidence 999999888777766654
|
WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity. |
| >PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.8e-10 Score=101.83 Aligned_cols=90 Identities=17% Similarity=0.182 Sum_probs=60.4
Q ss_pred ceECCCCEEc-ceEEee--------eEEccCcEECCCcEEe-ecEEeCCccccchhHHH--hhhhCCCcceEeCCCCEEe
Q 014953 322 SIISHGSFIT-SSFIEH--------SVVGIRSRINANVHLK-DTMMLGADFYETDAEVA--SLLAEGRVPVGIGENTKIK 389 (415)
Q Consensus 322 ~~ig~~~~I~-~~~i~~--------svig~~~~ig~~~~i~-~sii~~~~~~~~~~~~~--~~~~~~~~~~~Ig~~~~i~ 389 (415)
+.||++|.|+ +++|.+ ++||++|.|++++.|. +|+|++++.+..++.+. ..++++ |.||.++.|.
T Consensus 81 v~IG~~~~I~e~~~I~~~~~~~~~~t~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd~---~~Ig~~~~i~ 157 (262)
T PRK05289 81 LVIGDNNTIREFVTINRGTVQGGGVTRIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDY---AIIGGLTAVH 157 (262)
T ss_pred EEECCCCEECCCeEEecccccCCCeeEECCceEECCCCEECCeEEECCCeEECCccccccccccCCc---EEEeecceec
Confidence 4455555555 344432 3566666666666665 45566666565555443 355666 7788888887
Q ss_pred -eeEECCCeEEcCCcccCcccccccc
Q 014953 390 -YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 390 -~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
++.||+++.|++++.+.+.+-+|++
T Consensus 158 ~~v~Ig~~~~Ig~gs~V~~di~~~~~ 183 (262)
T PRK05289 158 QFVRIGAHAMVGGMSGVSQDVPPYVL 183 (262)
T ss_pred CCCEECCCCEEeeecceeccCCCCeE
Confidence 8999999999999999999988775
|
|
| >PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.5e-09 Score=104.25 Aligned_cols=14 Identities=7% Similarity=0.124 Sum_probs=9.9
Q ss_pred eeeeeEEEEeHHHH
Q 014953 220 IASMGVYLFKKEIL 233 (415)
Q Consensus 220 l~~~Giyi~~~~~l 233 (415)
...++.+++++++.
T Consensus 52 ~~~A~a~Iv~~d~~ 65 (343)
T PRK00892 52 TTKAGAVIVSPDDA 65 (343)
T ss_pred ccCCeEEEechhhh
Confidence 35678888888653
|
|
| >PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=9.7e-10 Score=101.21 Aligned_cols=76 Identities=14% Similarity=0.151 Sum_probs=47.5
Q ss_pred ccCCCCCccccCccCCCeee-cCCccc-cceECCCCEEc-ceEEe-eeEEccCcEECCCcEEee-------------cEE
Q 014953 295 FYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKD-------------TMM 357 (415)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i~-~svig~~~~ig~~~~i~~-------------sii 357 (415)
.++|.+.+.+++.+++++.| +.+.|. ++.||++|.|+ ++.|. +++||++|.|++++.|.+ ..|
T Consensus 4 ~I~p~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~I 83 (262)
T PRK05289 4 KIHPTAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVI 83 (262)
T ss_pred ccCCCCEECCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEE
Confidence 34555555555656555555 445553 56667777776 45554 577777777777777753 667
Q ss_pred eCCccccchhHHH
Q 014953 358 LGADFYETDAEVA 370 (415)
Q Consensus 358 ~~~~~~~~~~~~~ 370 (415)
++++.|.+++.+.
T Consensus 84 G~~~~I~e~~~I~ 96 (262)
T PRK05289 84 GDNNTIREFVTIN 96 (262)
T ss_pred CCCCEECCCeEEe
Confidence 7776666666553
|
|
| >PRK13627 carnitine operon protein CaiE; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.3e-09 Score=95.45 Aligned_cols=93 Identities=11% Similarity=0.098 Sum_probs=55.6
Q ss_pred cCCCCCccccCccCCCeee-cCCcccc----ceECCCCEEc-ceEE-----eeeEEccCcEECCCcEEeecEEeCCcccc
Q 014953 296 YDATKPIYTSRRNLPPSKI-DDSKIVD----SIISHGSFIT-SSFI-----EHSVVGIRSRINANVHLKDTMMLGADFYE 364 (415)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~i-~~~~i~~----~~ig~~~~I~-~~~i-----~~svig~~~~ig~~~~i~~sii~~~~~~~ 364 (415)
+++++.+...+.|++++.| .++.|+. +.||++|.|+ +|.| .+|+||++|+||+++.|.+|+|+++
T Consensus 19 I~~~a~I~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g~vIG~~---- 94 (196)
T PRK13627 19 VHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRD---- 94 (196)
T ss_pred ECCCCEEECceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEeeEEECCC----
Confidence 3444444444445555555 4454431 2344444444 3433 2577777787877777777777777
Q ss_pred chhHHHhhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCc
Q 014953 365 TDAEVASLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSS 407 (415)
Q Consensus 365 ~~~~~~~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~ 407 (415)
|.||.++.+. +++||+++.|++++.+.+
T Consensus 95 ---------------v~IG~ga~V~~g~~IG~~s~Vgags~V~~ 123 (196)
T PRK13627 95 ---------------ALVGMNSVIMDGAVIGEESIVAAMSFVKA 123 (196)
T ss_pred ---------------CEECcCCccCCCcEECCCCEEcCCCEEeC
Confidence 6777777765 677777777777775554
|
|
| >cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.9e-10 Score=101.58 Aligned_cols=33 Identities=18% Similarity=0.154 Sum_probs=18.6
Q ss_pred cceECCCCEEc-ceEEe-------------eeEEccCcEECCCcEEe
Q 014953 321 DSIISHGSFIT-SSFIE-------------HSVVGIRSRINANVHLK 353 (415)
Q Consensus 321 ~~~ig~~~~I~-~~~i~-------------~svig~~~~ig~~~~i~ 353 (415)
++.||++|+|+ ++.|. +++||++|+|++++.|.
T Consensus 47 ~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~ 93 (254)
T cd03351 47 PTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIH 93 (254)
T ss_pred CeEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCccEEe
Confidence 35555555555 35553 45666666666666664
|
It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. |
| >PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.8e-10 Score=110.78 Aligned_cols=116 Identities=17% Similarity=0.099 Sum_probs=78.1
Q ss_pred cCCCCCccccCccCCCeee-cCCccccceECCCCEEc-ceEEeeeEEccCcEECCCcEEee-cEEeCCc-----------
Q 014953 296 YDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKD-TMMLGAD----------- 361 (415)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~i-~~~~i~~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~-sii~~~~----------- 361 (415)
+.+...+...+.|++++.| .++.|.+++||++|+|+ ++.+.+|+|+++|.||+++.+.. +.+++++
T Consensus 277 I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~~~~~ 356 (459)
T PRK14355 277 IYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKIGNFVETKKI 356 (459)
T ss_pred EeCCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCCCEECCCccccCC
Confidence 3444445555566666666 66777788999999998 68888888888888876666643 3333333
Q ss_pred -----------------------cccchhHH---------HhhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCcc
Q 014953 362 -----------------------FYETDAEV---------ASLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSST 408 (415)
Q Consensus 362 -----------------------~~~~~~~~---------~~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~ 408 (415)
.|+.++.+ .+.++++ |.||.++.+. ++.||+++.|++++.+.+.
T Consensus 357 ~ig~~~~~~~~~~ig~~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~---~~ig~~~~i~~~~~ig~~~~i~a~s~v~~~ 433 (459)
T PRK14355 357 VMGEGSKASHLTYLGDATIGRNVNIGCGTITCNYDGVKKHRTVIEDD---VFVGSDVQFVAPVTVGRNSLIAAGTTVTKD 433 (459)
T ss_pred EECCCceeeeeccccCCEECCCCEEccceeecCcCCccccCcEecCC---eEEcCCCEEeCCcEECCCCEECCCCEEccc
Confidence 33333211 1234555 6777777666 7889999999999988888
Q ss_pred cccccc
Q 014953 409 ISRFSL 414 (415)
Q Consensus 409 ~~~~~~ 414 (415)
+.++++
T Consensus 434 v~~~~~ 439 (459)
T PRK14355 434 VPPDSL 439 (459)
T ss_pred CCCCcE
Confidence 877765
|
|
| >TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.4e-10 Score=102.18 Aligned_cols=73 Identities=15% Similarity=0.179 Sum_probs=39.0
Q ss_pred EEccCcEECCCcEE-eecEEeCCccccchhHHH--hhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 339 VVGIRSRINANVHL-KDTMMLGADFYETDAEVA--SLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 339 vig~~~~ig~~~~i-~~sii~~~~~~~~~~~~~--~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
+||++|.|+.++.| .+|.|++++.+..++.+. +.++++ |.||.++.|. ++.|++++.|++++.+.+.|-++++
T Consensus 103 ~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~---~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~~i~~~~~ 179 (254)
T TIGR01852 103 RIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDY---AIIGGLVAVHQFVRIGRYAMIGGLSAVSKDVPPYGL 179 (254)
T ss_pred EECCCCEECCCCEEccCCEECCCCEECCCCEECCCcEECCC---cEEeccCEECCCcEECCCCEEeeeeeEeeecCCCcE
Confidence 44444444444444 334444444444443332 233444 5555555555 5677777777777777777766654
|
This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132). |
| >PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-09 Score=107.09 Aligned_cols=94 Identities=15% Similarity=0.202 Sum_probs=70.5
Q ss_pred ccCCCCCccccCccCCCeeecCCccccceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhh
Q 014953 295 FYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLL 373 (415)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~i~~~~i~~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~ 373 (415)
++++++.+ ..+.|+++|.|.+ .+.+|+||++|+|+ ++.|++|+|+++|+||++++|.+|+++++++|+.++.+.
T Consensus 284 ~i~~~~~i-~~~~Ig~~~~I~~-~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~--- 358 (380)
T PRK05293 284 YIAENAKV-KNSLVVEGCVVYG-TVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGENAVIGDGVIIG--- 358 (380)
T ss_pred EECCCCEE-ecCEECCCCEEcc-eecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCCCEECCCCEEc---
Confidence 34444444 3455666666632 45689999999999 799999999999999999999999999999998875443
Q ss_pred hCCCc-ceEeCCCCEEe-eeEEC
Q 014953 374 AEGRV-PVGIGENTKIK-YEQLK 394 (415)
Q Consensus 374 ~~~~~-~~~Ig~~~~i~-~~~i~ 394 (415)
.+.. |..||+++.|. +++||
T Consensus 359 -~~~~~~~~ig~~~~~~~~~~~~ 380 (380)
T PRK05293 359 -GGKEVITVIGENEVIGVGTVIG 380 (380)
T ss_pred -CCCceeEEEeCCCCCCCCcEeC
Confidence 2222 46688888776 66664
|
|
| >cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.9e-09 Score=91.17 Aligned_cols=72 Identities=10% Similarity=0.058 Sum_probs=50.0
Q ss_pred ccCCCCCccccCccCCCeee-cCCccc----cceECCCCEEc-ceEEee-----eEEccCcEECCCcEEeecEEeCCccc
Q 014953 295 FYDATKPIYTSRRNLPPSKI-DDSKIV----DSIISHGSFIT-SSFIEH-----SVVGIRSRINANVHLKDTMMLGADFY 363 (415)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~i-~~~~i~----~~~ig~~~~I~-~~~i~~-----svig~~~~ig~~~~i~~sii~~~~~~ 363 (415)
++++.+.+.....+++++.| +++.|. .++||++|.|+ ++.|.. ++||++|.|++++.|.++++++++.+
T Consensus 7 ~i~~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~I 86 (153)
T cd04645 7 FIAPNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGDNCLI 86 (153)
T ss_pred EECCCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECCCCEE
Confidence 44555555555566666666 455554 35788888888 577765 58888888888888888888888444
Q ss_pred cch
Q 014953 364 ETD 366 (415)
Q Consensus 364 ~~~ 366 (415)
+.+
T Consensus 87 g~~ 89 (153)
T cd04645 87 GMG 89 (153)
T ss_pred CCC
Confidence 433
|
coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. |
| >PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.9e-09 Score=98.52 Aligned_cols=35 Identities=9% Similarity=0.190 Sum_probs=24.1
Q ss_pred eEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 380 VGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 380 ~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
+.||.++.|. .+.||+++.|++++.+.+.+-+|++
T Consensus 144 a~Ig~~a~V~~~~~IG~~a~Vg~gs~V~~dVpp~~i 179 (255)
T PRK12461 144 AIISGNCLVHQFCRIGALAMMAGGSRISKDVPPYCM 179 (255)
T ss_pred eEEeCCCEECCCCEECCCcEECCCceEeccCCCCeE
Confidence 4455555554 5677777777777778888888775
|
|
| >cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.6e-09 Score=79.69 Aligned_cols=63 Identities=16% Similarity=0.144 Sum_probs=51.8
Q ss_pred ECCCCEEc-ceEE-eeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEeeeEECCCeEEcC
Q 014953 324 ISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKYEQLKPICHIVE 401 (415)
Q Consensus 324 ig~~~~I~-~~~i-~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~~i~~~~~i~~ 401 (415)
|++++.|+ ++.| .+++|+++|.||++++|.+|+++++ +.|++++.+.+|++++++.|++
T Consensus 2 i~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~-------------------~~i~~~~~i~~sii~~~~~v~~ 62 (80)
T cd05824 2 IDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSN-------------------STVRDHSWVKSSIVGWNSTVGR 62 (80)
T ss_pred cCCCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCC-------------------CEECCCCEEeCCEEeCCCEECC
Confidence 34455554 3444 3799999999999999999999999 8999999999999999999998
Q ss_pred Cccc
Q 014953 402 TKYD 405 (415)
Q Consensus 402 ~~~~ 405 (415)
+...
T Consensus 63 ~~~~ 66 (80)
T cd05824 63 WTRL 66 (80)
T ss_pred CcEE
Confidence 8643
|
It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.7e-08 Score=86.47 Aligned_cols=219 Identities=20% Similarity=0.223 Sum_probs=139.3
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccC-CcEEEEEcccChhHHHHHHHhhccCCCCcc
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVT 84 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~g-i~~I~vv~~~~~~~i~~~l~~~~~~~~~~~ 84 (415)
+++.-|+|+|.|.++|. ..|-+.+++|+ |||.|+++++.+++ |++|+|-+ ..+.+.+.-.+ +|.
T Consensus 1 ~~~~iAiIpAR~gSKgI------~~KNi~~~~gk-pLi~~~I~aA~ns~~fd~VviSs--Ds~~Il~~A~~---yga--- 65 (228)
T COG1083 1 MMKNIAIIPARGGSKGI------KNKNIRKFGGK-PLIGYTIEAALNSKLFDKVVISS--DSEEILEEAKK---YGA--- 65 (228)
T ss_pred CcceEEEEeccCCCCcC------CccchHHhCCc-chHHHHHHHHhcCCccceEEEcC--CcHHHHHHHHH---hCc---
Confidence 45677999999999999 57999999999 99999999999987 56665554 34445444332 221
Q ss_pred cCCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe--ecccChHHHHHHHHHcCCcEEEE
Q 014953 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGADITIS 162 (415)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~--i~~~~l~~~l~~h~~~~~~~ti~ 162 (415)
. +.+.++..- ..+ ...|.+++.++.+.... ..+.++++.+-. ....++++.++.+.+++.+-.+.
T Consensus 66 ---k-~~~~Rp~~L----A~D-~ast~~~~lh~le~~~~----~~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~s 132 (228)
T COG1083 66 ---K-VFLKRPKEL----ASD-RASTIDAALHALESFNI----DEDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFS 132 (228)
T ss_pred ---c-ccccCChhh----ccC-chhHHHHHHHHHHHhcc----ccCeeEEeccCccccchhHHHHHHHHHhcCCCcceEE
Confidence 1 112222111 111 13455677777766654 135577777776 44567999999999988887888
Q ss_pred EEEcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCC
Q 014953 163 CLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP 242 (415)
Q Consensus 163 ~~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~ 242 (415)
+.+.+. .-|-.... ++|.+..+.+.+.... +++..-..+..+..+|+++.+.|.. .
T Consensus 133 a~e~e~---~p~k~f~~-~~~~~~~~~~~~~~~~--------------rrQ~Lpk~Y~~NgaiYi~~~~~l~e---~--- 188 (228)
T COG1083 133 AVECEH---HPYKAFSL-NNGEVKPVNEDPDFET--------------RRQDLPKAYRENGAIYINKKDALLE---N--- 188 (228)
T ss_pred Eeeccc---chHHHHHh-cCCceeecccCCcccc--------------ccccchhhhhhcCcEEEehHHHHhh---c---
Confidence 777654 22222233 3477877777664322 1221123466778899999987742 1
Q ss_pred CCCcccccchhhhcccceEEEEEeCc-eEEecCCHHHHHHHHHhhc
Q 014953 243 TANDFGSEIIPASANEQFLKAYLFND-YWEDIGTIRSFFEANLALT 287 (415)
Q Consensus 243 ~~~~~~~~~l~~l~~~~~i~~~~~~g-~~~di~t~~~y~~an~~~l 287 (415)
...| ......|..+. ..+||++..|+..|+..+.
T Consensus 189 -~~~f----------~~~~~~y~m~~~~~~DID~~~Dl~iae~l~~ 223 (228)
T COG1083 189 -DCFF----------IPNTILYEMPEDESIDIDTELDLEIAENLIF 223 (228)
T ss_pred -Ccee----------cCCceEEEcCcccccccccHHhHHHHHHHhh
Confidence 1111 12334444443 4789999999999988664
|
|
| >cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.7e-09 Score=91.52 Aligned_cols=109 Identities=13% Similarity=0.066 Sum_probs=72.3
Q ss_pred ccCCCCCccccCccCCCeee-cCCccc-----cceECCCCEEc-ceEEe-----eeEEccCcEECCCcEEee-cEEeCCc
Q 014953 295 FYDATKPIYTSRRNLPPSKI-DDSKIV-----DSIISHGSFIT-SSFIE-----HSVVGIRSRINANVHLKD-TMMLGAD 361 (415)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~i-~~~~i~-----~~~ig~~~~I~-~~~i~-----~svig~~~~ig~~~~i~~-sii~~~~ 361 (415)
++++++.+.....++++++| +++.|. ++.||++|.|+ ++.+. ++.||++|.|++++.|.+ +.|++++
T Consensus 10 ~I~~~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~Ig~~~ 89 (167)
T cd00710 10 YVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAYIGDNC 89 (167)
T ss_pred EECCCCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEEECCCC
Confidence 34555555555556666666 555553 36788888888 56663 577888888888888877 7778887
Q ss_pred cccchhHHH-hhhhCCCcceEeCCCCEEeeeEECCCeEEcCCcccC
Q 014953 362 FYETDAEVA-SLLAEGRVPVGIGENTKIKYEQLKPICHIVETKYDS 406 (415)
Q Consensus 362 ~~~~~~~~~-~~~~~~~~~~~Ig~~~~i~~~~i~~~~~i~~~~~~~ 406 (415)
.++.++.+. +.++++ |.||.++.|.++.|++++.+++++.+.
T Consensus 90 ~Ig~~~~I~~~~Ig~~---~~Ig~~s~i~~~~i~~~~~v~~~~~v~ 132 (167)
T cd00710 90 FIGFRSVVFNAKVGDN---CVIGHNAVVDGVEIPPGRYVPAGAVIT 132 (167)
T ss_pred EECCCCEEECCEECCC---CEEcCCCEEeCCEeCCCCEECCCCEEc
Confidence 666666554 344555 666666666666667777776666544
|
They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain. |
| >PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.4e-09 Score=108.96 Aligned_cols=106 Identities=19% Similarity=0.185 Sum_probs=62.8
Q ss_pred CccCCCeee-cCCccccceECCCCEEc-ceEEeeeEEccCcEECCCcEEe-ecEEeCCccccchhHHH------------
Q 014953 306 RRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLK-DTMMLGADFYETDAEVA------------ 370 (415)
Q Consensus 306 ~~i~~~~~i-~~~~i~~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~-~sii~~~~~~~~~~~~~------------ 370 (415)
+.+++++.| +++.|.+++||++|+|+ ++.|.+|+||++|.||++++|. +++++++++|+..+++.
T Consensus 288 ~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~ 367 (456)
T PRK14356 288 SRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKKAVLGKGAKANH 367 (456)
T ss_pred eEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCEecCCceeeeeEecCCcEecc
Confidence 344455555 45555666667777776 4666666666666666666665 35555554444433221
Q ss_pred -------------------------------hhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 371 -------------------------------SLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 371 -------------------------------~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
+.++++ +.||.+|.+. ++.||+++.|++++.+.+.+.++++
T Consensus 368 ~~~ig~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~---~~ig~~~~i~~~~~ig~~~~i~~~~~v~~~~~~~~~ 440 (456)
T PRK14356 368 LTYLGDAEIGAGANIGAGTITCNYDGVNKHRTVIGEG---AFIGSNTALVAPVTIGDGALVGAGSVITKDVPDGSL 440 (456)
T ss_pred cccccCeEECCCCEECCCceeeccccccCCCCEECCC---cEEcCCCEEeCCcEECCCCEEcCCCEEeccCCCCcE
Confidence 122222 4455555554 6778888888888888888777764
|
|
| >PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.3e-09 Score=102.00 Aligned_cols=109 Identities=10% Similarity=0.102 Sum_probs=77.6
Q ss_pred ceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCC
Q 014953 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGD 87 (415)
Q Consensus 8 ~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~ 87 (415)
++.+||||||.|+||+ .+|.|+|+.|+ ||++|+++.|.. .+++|+|+++... ..+.. ..
T Consensus 160 ~i~~IILAGGkSsRMG-----~dKaLL~~~Gk-pLl~~~ie~l~~-~~~~ViVv~~~~~---~~~~~----~~------- 218 (346)
T PRK14500 160 PLYGLVLTGGKSRRMG-----KDKALLNYQGQ-PHAQYLYDLLAK-YCEQVFLSARPSQ---WQGTP----LE------- 218 (346)
T ss_pred CceEEEEeccccccCC-----CCcccceeCCc-cHHHHHHHHHHh-hCCEEEEEeCchH---hhhcc----cc-------
Confidence 6789999999999997 69999999999 999999988876 4789988875421 11100 00
Q ss_pred ceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHHH
Q 014953 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNH 152 (415)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~h 152 (415)
.+.++..... ..|...+|+.++.... .+.+++++||+ +...+ +..+++.+
T Consensus 219 -~v~~I~D~~~--------~~GPlagI~aaL~~~~------~~~~lVl~cDmP~l~~~~l~~L~~~~ 270 (346)
T PRK14500 219 -NLPTLPDRGE--------SVGPISGILTALQSYP------GVNWLVVACDLAYLNSETVEKLLAHY 270 (346)
T ss_pred -CCeEEeCCCC--------CCChHHHHHHHHHhCC------CCCEEEEECCcCCCCHHHHHHHHHhh
Confidence 0223222221 2599999999987653 35789999999 55655 56776654
|
|
| >PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.7e-08 Score=97.98 Aligned_cols=216 Identities=18% Similarity=0.206 Sum_probs=124.5
Q ss_pred cceEEEEEcCCCCCcccccccCCcccceeeC---Ccceeehhehhhhhcc--------------CCcEEEEEcccChhHH
Q 014953 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIG---GAYRLIDVPMSNCINS--------------GINKVYILTQYNSASL 69 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~llpv~---g~~pli~~~l~~l~~~--------------gi~~I~vv~~~~~~~i 69 (415)
.++.+||||||.||||+ ...||+|+||+ |+ ||++++++++... .+.-+++...+.++.+
T Consensus 105 gkvavViLAGG~GTRLg---~~~PK~ll~I~~~~gk-sL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~t 180 (482)
T PTZ00339 105 GEVAVLILAGGLGTRLG---SDKPKGLLECTPVKKK-TLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHDQT 180 (482)
T ss_pred CCeEEEEECCCCcCcCC---CCCCCeEeeecCCCCc-cHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcchHHHH
Confidence 46899999999999996 68999999994 88 9999999999864 2444444455777889
Q ss_pred HHHHHhhccCCCCc---c-cCCceEEEecCc-cCC--CCCC--CccccchHHHHHHhhh--hhcCCCCCCcCeEEEEcCC
Q 014953 70 NRHLARAYNYGSGV---T-FGDGCVEVLAAT-QTP--GEAG--KRWFQGTADAVRQFHW--LFEDPRNKVIEDVLILSGD 138 (415)
Q Consensus 70 ~~~l~~~~~~~~~~---~-~~~~~v~i~~~~-~~~--~~~~--~~~~~Gt~~al~~~~~--~i~~~~~~~~~~~lv~~gD 138 (415)
.+|+.+...|+-.. . |....+..+... ... .+.+ .-.|.|.|+-...... .+++....+.+.+.+.+.|
T Consensus 181 ~~~f~~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vD 260 (482)
T PTZ00339 181 RQFLEENNFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVISID 260 (482)
T ss_pred HHHHHhccccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEecC
Confidence 99987543232110 0 000001111100 000 0000 1124577665544321 1222222346889999999
Q ss_pred eecc-cChHHHHHHHHHcCC-cEEEEEEEcCCCcCCcccEEEECC-CCCeEEEEEcCCcccccccccccccccccccccc
Q 014953 139 HLYR-MDYMDFVQNHRQSGA-DITISCLPMDDSRASDFGLMKINN-EGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAE 215 (415)
Q Consensus 139 ~i~~-~~l~~~l~~h~~~~~-~~ti~~~~~~~~~~~~~g~v~~d~-~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~ 215 (415)
.+.. .---.++-++..+++ ++.-.+.+... .+.-|++.... .-.|+.+.|-+....... +.....
T Consensus 261 N~L~k~~DP~flG~~~~~~~~~~~~kvvk~~~--~EkvG~~~~~~g~~~vvEYsEi~~~~~~~~----------~~~~g~ 328 (482)
T PTZ00339 261 NILAKVLDPEFIGLASSFPAHDVLNKCVKRED--DESVGVFCLKDYEWQVVEYTEINERILNND----------ELLTGE 328 (482)
T ss_pred cccccccCHHHhHHHHHCCchhheeeeecCCC--CCceeEEEEeCCcccEEEEeccChhhhhcc----------cccCCe
Confidence 9643 333467777777777 65554443332 24457665532 226788877654322100 000111
Q ss_pred cccceeeeeEEEEeHHHHHHHHh
Q 014953 216 EKPYIASMGVYLFKKEILLNLLR 238 (415)
Q Consensus 216 ~~~~l~~~Giyi~~~~~l~~~l~ 238 (415)
......++..++|+-++|+++.+
T Consensus 329 l~f~~gnI~~h~fsl~fl~~~~~ 351 (482)
T PTZ00339 329 LAFNYGNICSHIFSLDFLKKVAA 351 (482)
T ss_pred ecccccceEEEEEEHHHHHHHhh
Confidence 22356778999999999987654
|
|
| >cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.5e-09 Score=83.16 Aligned_cols=76 Identities=16% Similarity=0.162 Sum_probs=64.5
Q ss_pred cCCCCCccccCccCCCeeecCCccccceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhh
Q 014953 296 YDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLA 374 (415)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~i~~~~i~~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~ 374 (415)
+.+++.+ ..+.+++++.+.++.+.+++|+++|+|+ ++.|.+|+|++++.||++++|.+|+++++
T Consensus 4 i~~~~~i-~~s~Ig~~~~I~~~~I~~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~~siig~~-------------- 68 (104)
T cd04651 4 IGRRGEV-KNSLVSEGCIISGGTVENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRRAIIDKN-------------- 68 (104)
T ss_pred ecCCCEE-EeEEECCCCEEcCeEEEeCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEEeEEECCC--------------
Confidence 3444555 3567888888877888999999999999 79999999999999999999999999999
Q ss_pred CCCcceEeCCCCEEeee
Q 014953 375 EGRVPVGIGENTKIKYE 391 (415)
Q Consensus 375 ~~~~~~~Ig~~~~i~~~ 391 (415)
+.||+++++.+.
T Consensus 69 -----~~Ig~~~~v~~~ 80 (104)
T cd04651 69 -----VVIPDGVVIGGD 80 (104)
T ss_pred -----CEECCCCEECCC
Confidence 788888887743
|
It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. |
| >cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E | Back alignment and domain information |
|---|
Probab=98.91 E-value=4e-09 Score=89.35 Aligned_cols=76 Identities=20% Similarity=0.234 Sum_probs=52.6
Q ss_pred cceECCCCEEc-ceEEee----eEEccCcEECCCcEE-----eecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEe-
Q 014953 321 DSIISHGSFIT-SSFIEH----SVVGIRSRINANVHL-----KDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK- 389 (415)
Q Consensus 321 ~~~ig~~~~I~-~~~i~~----svig~~~~ig~~~~i-----~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~- 389 (415)
++.||++|.|+ ++.|.. +.||++|.|+++|.| .+++|+++++|+.++.+. + +.||++|.|.
T Consensus 18 ~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~-----~---~~Ig~~~~Ig~ 89 (155)
T cd04745 18 DVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILH-----G---CTIGRNALVGM 89 (155)
T ss_pred cEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEE-----C---CEECCCCEECC
Confidence 56777777777 566653 788888999888888 568888886665555332 1 5666666666
Q ss_pred eeEECCCeEEcCCcc
Q 014953 390 YEQLKPICHIVETKY 404 (415)
Q Consensus 390 ~~~i~~~~~i~~~~~ 404 (415)
+|+|+++++|++++.
T Consensus 90 ~~~I~~g~~Ig~~~~ 104 (155)
T cd04745 90 NAVVMDGAVIGEESI 104 (155)
T ss_pred CCEEeCCCEECCCCE
Confidence 666666666666654
|
coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity. |
| >cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.2e-09 Score=80.41 Aligned_cols=80 Identities=16% Similarity=0.169 Sum_probs=62.2
Q ss_pred cCCCeee-cCCcc-ccceECCCCEEc-ceEEe-eeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeC
Q 014953 308 NLPPSKI-DDSKI-VDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIG 383 (415)
Q Consensus 308 i~~~~~i-~~~~i-~~~~ig~~~~I~-~~~i~-~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig 383 (415)
+++.+.+ +++.+ ..++||++|.|+ ++.|. ++.||++|.||. +|.+|+++++ +.|+
T Consensus 14 ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~-------------------~~i~ 72 (101)
T cd05635 14 IGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGY-------------------SNKQ 72 (101)
T ss_pred ECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCC-------------------CEec
Confidence 3334444 33433 357788888887 57665 588888888875 6889999999 8999
Q ss_pred CCCEEeeeEECCCeEEcCCcccCcc
Q 014953 384 ENTKIKYEQLKPICHIVETKYDSST 408 (415)
Q Consensus 384 ~~~~i~~~~i~~~~~i~~~~~~~~~ 408 (415)
.+++|.+++|++++.|++++..|.-
T Consensus 73 ~~~~lg~siIg~~v~ig~~~~~~~~ 97 (101)
T cd05635 73 HDGFLGHSYLGSWCNLGAGTNNSDL 97 (101)
T ss_pred CcCEEeeeEECCCCEECCCceeccc
Confidence 9999999999999999999876653
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.8e-09 Score=90.60 Aligned_cols=97 Identities=15% Similarity=0.195 Sum_probs=72.3
Q ss_pred cCCCeee-cCCccc-cceECCCCEEc-ceEEe-----eeEEccCcEECCCcEEe-----ecEEeCCccccchhHHH--hh
Q 014953 308 NLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-----HSVVGIRSRINANVHLK-----DTMMLGADFYETDAEVA--SL 372 (415)
Q Consensus 308 i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i~-----~svig~~~~ig~~~~i~-----~sii~~~~~~~~~~~~~--~~ 372 (415)
+++++.| +++.+. ++.||++|.|+ ++.|. ++.||++|.|++++.|. ++.|++++.+..++.+. +.
T Consensus 5 ig~~~~I~~~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~ 84 (167)
T cd00710 5 IDPSAYVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAY 84 (167)
T ss_pred eCCCeEECCCCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEE
Confidence 3444444 344443 56667777776 45553 47899999999999995 57788888888877664 56
Q ss_pred hhCCCcceEeCCCCEEeeeEECCCeEEcCCcccCc
Q 014953 373 LAEGRVPVGIGENTKIKYEQLKPICHIVETKYDSS 407 (415)
Q Consensus 373 ~~~~~~~~~Ig~~~~i~~~~i~~~~~i~~~~~~~~ 407 (415)
++++ |.||.+|.|.++.||+++.|++++...+
T Consensus 85 Ig~~---~~Ig~~~~I~~~~Ig~~~~Ig~~s~i~~ 116 (167)
T cd00710 85 IGDN---CFIGFRSVVFNAKVGDNCVIGHNAVVDG 116 (167)
T ss_pred ECCC---CEECCCCEEECCEECCCCEEcCCCEEeC
Confidence 7888 8899999999999999999999887653
|
They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain. |
| >TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.7e-09 Score=108.24 Aligned_cols=94 Identities=20% Similarity=0.149 Sum_probs=68.4
Q ss_pred cCCCeee-cCCccc-cceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHH--hhhhCCCcceEe
Q 014953 308 NLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVA--SLLAEGRVPVGI 382 (415)
Q Consensus 308 i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~--~~~~~~~~~~~I 382 (415)
+++++.| +++.|. ++.||++|.|+ ++.|.+|+||++|.|++++.|.+++|++++.|+.++.+. +.++++ |.|
T Consensus 264 ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~---~~I 340 (451)
T TIGR01173 264 IGRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAG---VHI 340 (451)
T ss_pred ECCCCEEcCCeEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCC---cEE
Confidence 4444555 455554 68899999999 688999999999999999999999999999888887664 455655 555
Q ss_pred CCCCEEee-----------------eEECCCeEEcCCcc
Q 014953 383 GENTKIKY-----------------EQLKPICHIVETKY 404 (415)
Q Consensus 383 g~~~~i~~-----------------~~i~~~~~i~~~~~ 404 (415)
|++|.+.+ |.||+++.|++++.
T Consensus 341 g~~~~i~~~~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~ 379 (451)
T TIGR01173 341 GNFVETKNARIGKGSKAGHLSYLGDAEIGSNVNIGAGTI 379 (451)
T ss_pred ccceeecCcEECCCcEecceeeEeeeEEcCCcEECCCeE
Confidence 55544433 55556666666543
|
This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes. |
| >TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.4e-09 Score=96.05 Aligned_cols=80 Identities=15% Similarity=0.191 Sum_probs=41.5
Q ss_pred cceECCCCEEc-ceEEe-------------eeEEccCcEECCCcEEee--------cEEeCCccccchhHHH--hhhhCC
Q 014953 321 DSIISHGSFIT-SSFIE-------------HSVVGIRSRINANVHLKD--------TMMLGADFYETDAEVA--SLLAEG 376 (415)
Q Consensus 321 ~~~ig~~~~I~-~~~i~-------------~svig~~~~ig~~~~i~~--------sii~~~~~~~~~~~~~--~~~~~~ 376 (415)
++.||++|+|+ ++.|. +++||++|.|++++.|.. ++|++++.+..++.+. +.++++
T Consensus 46 ~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~ 125 (254)
T TIGR01852 46 HTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTASGGGVTRIGNNNLLMAYSHIAHDCVVGNH 125 (254)
T ss_pred eEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCcccCCCCcEEECCCCEECCCCEEccCCEECCC
Confidence 46666666666 45553 467777777777777753 3455555444444332 233333
Q ss_pred CcceEeCCCCEEe-eeEECCCeEEcCCc
Q 014953 377 RVPVGIGENTKIK-YEQLKPICHIVETK 403 (415)
Q Consensus 377 ~~~~~Ig~~~~i~-~~~i~~~~~i~~~~ 403 (415)
|.|+.++.+. +|+||+++.|+.++
T Consensus 126 ---~~i~~~~~i~~~~~Igd~~~Ig~~~ 150 (254)
T TIGR01852 126 ---VILANNATLAGHVEVGDYAIIGGLV 150 (254)
T ss_pred ---CEECCCCEECCCcEECCCcEEeccC
Confidence 3333333333 34444444444444
|
This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132). |
| >COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.2e-09 Score=98.99 Aligned_cols=67 Identities=24% Similarity=0.242 Sum_probs=60.4
Q ss_pred cccCccCCCeeecCCccccceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceE
Q 014953 303 YTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVG 381 (415)
Q Consensus 303 ~~~~~i~~~~~i~~~~i~~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~ 381 (415)
..++.+..+|.|.+ .+.+|+|+.|++|+ ++.|++|+|+++|.||++|+|+++||..+ |.
T Consensus 294 v~nSLv~~GciI~G-~V~nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l~~aIIDk~-------------------v~ 353 (393)
T COG0448 294 VSNSLVAGGCIISG-TVENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLRRAIIDKN-------------------VV 353 (393)
T ss_pred EeeeeeeCCeEEEe-EEEeeEEecCeEECCCCEEEeeEEeCCcEECCCCEEEEEEeCCC-------------------cE
Confidence 35677889999988 88999999999999 79999999999999999999999999999 67
Q ss_pred eCCCCEEe
Q 014953 382 IGENTKIK 389 (415)
Q Consensus 382 Ig~~~~i~ 389 (415)
|++|++|.
T Consensus 354 I~~g~~i~ 361 (393)
T COG0448 354 IGEGVVIG 361 (393)
T ss_pred eCCCcEEc
Confidence 77777776
|
|
| >PLN02474 UTP--glucose-1-phosphate uridylyltransferase | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.4e-07 Score=90.52 Aligned_cols=355 Identities=14% Similarity=0.131 Sum_probs=184.0
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhc----cCCc-EEEEEcccC-hhHHHHHHHhhccC
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCIN----SGIN-KVYILTQYN-SASLNRHLARAYNY 79 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~----~gi~-~I~vv~~~~-~~~i~~~l~~~~~~ 79 (415)
..++-+|.||||.||||+ .+.||.|+|+.+..++++.+++++.. .|.. ..++-+++. ++...+++.+...+
T Consensus 77 L~k~avlkLnGGlGTrmG---~~~PKs~i~v~~~~sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k~~~~ 153 (469)
T PLN02474 77 LDKLVVLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEKYTNS 153 (469)
T ss_pred HhcEEEEEecCCcccccC---CCCCceeEEcCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHHHcCCC
Confidence 357889999999999998 78999999995433899888887754 3443 446666654 46788888763211
Q ss_pred CCC-cccCCceEEEecC-ccC----CC-CCCC-ccccchHHHHHHhhh--hhcCCCCCCcCeEEEEcCCeecccChHHHH
Q 014953 80 GSG-VTFGDGCVEVLAA-TQT----PG-EAGK-RWFQGTADAVRQFHW--LFEDPRNKVIEDVLILSGDHLYRMDYMDFV 149 (415)
Q Consensus 80 ~~~-~~~~~~~v~i~~~-~~~----~~-~~~~-~~~~Gt~~al~~~~~--~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l 149 (415)
... ..|....+.-+.. ... .. .... -.+.|.|+....... .+++....+.+.+.+.+.|.+...-=..++
T Consensus 154 ~~~i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga~vDp~~l 233 (469)
T PLN02474 154 NIEIHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVDLKIL 233 (469)
T ss_pred ccceEEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccccccCHHHH
Confidence 111 1111110100100 000 00 0001 124466655433221 122222234689999999997544334688
Q ss_pred HHHHHcCCcEEEEEEEcCCCcCCcccEEEECCCC--CeEEEEEcCCcccccccccccccccccccccccccceeeeeEEE
Q 014953 150 QNHRQSGADITISCLPMDDSRASDFGLMKINNEG--RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYL 227 (415)
Q Consensus 150 ~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~--~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi 227 (415)
.+|..+++++++=+.+...+. ..-|.++. .+| +++++.+-|+..... + .........+++.++
T Consensus 234 g~~~~~~~e~~~ev~~Kt~~d-~kgG~l~~-~dgk~~lvEysqvp~e~~~~---f----------~~~~kf~~fNtnn~w 298 (469)
T PLN02474 234 NHLIQNKNEYCMEVTPKTLAD-VKGGTLIS-YEGKVQLLEIAQVPDEHVNE---F----------KSIEKFKIFNTNNLW 298 (469)
T ss_pred HHHHhcCCceEEEEeecCCCC-CCccEEEE-ECCEEEEEEEecCCHHHHHh---h----------cccccceeeeeeeEE
Confidence 888999999888776654321 33455553 345 477777766533210 0 011234678999999
Q ss_pred EeHHHHHHHHhhhCCCCCcc-------cccchh------hhccc-ceEEEEEeC-ceEEecCCHHHHHHHHHhhcCCCCC
Q 014953 228 FKKEILLNLLRWRFPTANDF-------GSEIIP------ASANE-QFLKAYLFN-DYWEDIGTIRSFFEANLALTAHPPM 292 (415)
Q Consensus 228 ~~~~~l~~~l~~~~~~~~~~-------~~~~l~------~l~~~-~~i~~~~~~-g~~~di~t~~~y~~an~~~l~~~~~ 292 (415)
|+-++++++++.......-. ...+++ ..+.- ....++.++ ..|..+.+..|++.+..++.....+
T Consensus 299 ~~L~~l~~~~~~~~l~~~~I~n~k~~~g~kv~q~Et~ig~ai~~f~~~~~v~VpR~rF~PVK~~~dll~~rsdly~l~~~ 378 (469)
T PLN02474 299 VNLKAIKRLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFDNAIGINVPRSRFLPVKATSDLLLVQSDLYTLVDG 378 (469)
T ss_pred EEHHHHHHHhhcCCCCceeecCCCCCCCeeEEEeHHHHHHHHHhCCCceEEEEchhhccCCCCCCCHHHHHHHHHHhccC
Confidence 99999988765321100000 000011 11110 123333332 2377888888888888776543322
Q ss_pred CCccCCCCCcccc--CccCCCeeecCCccccceECCCCEEcceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHH
Q 014953 293 FSFYDATKPIYTS--RRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVA 370 (415)
Q Consensus 293 ~~~~~~~~~~~~~--~~i~~~~~i~~~~i~~~~ig~~~~I~~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~ 370 (415)
.....+.....+. ..++|....-+--....- +--+.++ ..+=.|--+|+.|+++++.+.++..+.
T Consensus 379 ~l~~~~~~~~~~~p~IeL~~~f~~v~~f~~rf~-~iPsl~~---~d~LtV~Gdv~fG~~v~l~G~v~i~~~--------- 445 (469)
T PLN02474 379 FVIRNKARTNPSNPSIELGPEFKKVANFLSRFK-SIPSIVE---LDSLKVSGDVWFGSGIVLKGKVTITAK--------- 445 (469)
T ss_pred eEEecCcccCCCCCcEEECcccccHHhHHHhcC-CCCCccc---CCeEEEeeeeEECCCcEEEEEEEEEcC---------
Confidence 1111111011111 112211100000000000 2223332 123455557888888888887766552
Q ss_pred hhhhCCCcceEeCCCCEEeeeEECCC
Q 014953 371 SLLAEGRVPVGIGENTKIKYEQLKPI 396 (415)
Q Consensus 371 ~~~~~~~~~~~Ig~~~~i~~~~i~~~ 396 (415)
+..+..|-+|++++++++..+
T Consensus 446 -----~~~~~~ip~g~~l~~~~~~~~ 466 (469)
T PLN02474 446 -----SGVKLEIPDGAVLENKDINGP 466 (469)
T ss_pred -----CCCeeecCCCcEecceeeccc
Confidence 111256888888887777654
|
|
| >TIGR02287 PaaY phenylacetic acid degradation protein PaaY | Back alignment and domain information |
|---|
Probab=98.89 E-value=8.3e-09 Score=90.04 Aligned_cols=97 Identities=11% Similarity=0.170 Sum_probs=73.5
Q ss_pred cCCCeee-cCCcc-ccceECCCCEEc-ceEEe----eeEEccCcEECCCcEE-----eecEEeCCccccchhHHH-hhhh
Q 014953 308 NLPPSKI-DDSKI-VDSIISHGSFIT-SSFIE----HSVVGIRSRINANVHL-----KDTMMLGADFYETDAEVA-SLLA 374 (415)
Q Consensus 308 i~~~~~i-~~~~i-~~~~ig~~~~I~-~~~i~----~svig~~~~ig~~~~i-----~~sii~~~~~~~~~~~~~-~~~~ 374 (415)
++++++| +++.+ .++.||++|.|+ ++.|. ..+||++|.||++|.| .+|+|+++++|+.++.+. +.++
T Consensus 11 i~~~~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg 90 (192)
T TIGR02287 11 VHPEAYVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVG 90 (192)
T ss_pred CCCCcEECCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEEC
Confidence 3444444 33333 367788888887 67775 4689999999999999 569999999998888664 5677
Q ss_pred CCCcceEeCCCCEEe-eeEECCCeEEcCCcccCc
Q 014953 375 EGRVPVGIGENTKIK-YEQLKPICHIVETKYDSS 407 (415)
Q Consensus 375 ~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~ 407 (415)
++ |.||.++.+. +++||+++.|++++.+.+
T Consensus 91 ~~---~~IG~ga~I~~g~~IG~~s~Vgags~V~~ 121 (192)
T TIGR02287 91 RN---ALVGMNAVVMDGAVIGENSIVAASAFVKA 121 (192)
T ss_pred CC---CEECCCcccCCCeEECCCCEEcCCCEECC
Confidence 77 8888888886 788888888888876654
|
Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator. |
| >TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.4e-09 Score=93.83 Aligned_cols=99 Identities=13% Similarity=0.190 Sum_probs=56.9
Q ss_pred CCCCccccCccCCCeeecCCcc-ccceECCCCEEc-ceEE-eeeEEccCcEECCCcEEe---------ecEEeCCccccc
Q 014953 298 ATKPIYTSRRNLPPSKIDDSKI-VDSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLK---------DTMMLGADFYET 365 (415)
Q Consensus 298 ~~~~~~~~~~i~~~~~i~~~~i-~~~~ig~~~~I~-~~~i-~~svig~~~~ig~~~~i~---------~sii~~~~~~~~ 365 (415)
|.+.+..++.+++++.+....+ .++.||++|.|. +++| .++.||++|+|+.++.|. +++|+++++|++
T Consensus 105 p~a~i~~ga~Ig~~vvI~p~~Vniga~IGeGt~I~~~a~IG~~v~IG~nv~I~~g~~IgG~~ep~~~~~ViIgDnv~IGa 184 (269)
T TIGR00965 105 PGAAVRQGAFIAKNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGA 184 (269)
T ss_pred CCcEECCCcEECCCCEEeeeEEcCCcEECCCCEECCCcEECCCCEECCCCEEcCCcccCCCcccCCCCCeEECCCCEECC
Confidence 3344445555555555521122 256788888887 4666 357777777777777773 457777765555
Q ss_pred hhHHHhhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCc
Q 014953 366 DAEVASLLAEGRVPVGIGENTKIK-YEQLKPICHIVETK 403 (415)
Q Consensus 366 ~~~~~~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~ 403 (415)
++.+ .+| +.||++|.|. +++|+++++|.+.+
T Consensus 185 ~a~I----~~G---V~IG~gavIGaGavI~~~~~I~~~~ 216 (269)
T TIGR00965 185 RSEI----VEG---VIVEEGSVISMGVFIGQSTKIYDRE 216 (269)
T ss_pred CCEE----cCC---CEECCCCEEeCCCEECCCCEEeccc
Confidence 5443 223 5555555555 55555555555444
|
The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89). |
| >PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=5e-09 Score=100.57 Aligned_cols=13 Identities=23% Similarity=0.406 Sum_probs=4.8
Q ss_pred EccCcEECCCcEE
Q 014953 340 VGIRSRINANVHL 352 (415)
Q Consensus 340 ig~~~~ig~~~~i 352 (415)
||++|.|++++.|
T Consensus 169 Ig~~~~I~~~~~I 181 (343)
T PRK00892 169 IGNRVIIHSGAVI 181 (343)
T ss_pred ECCCCEECCCCEE
Confidence 3333333333333
|
|
| >PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.9e-09 Score=106.01 Aligned_cols=73 Identities=21% Similarity=0.215 Sum_probs=52.8
Q ss_pred cCCCCCccccCccCCCeee-cCCccccceECCCCEEc-ceEEeeeEEccCcEECCCcEEe-ecEEeCCccccchhH
Q 014953 296 YDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLK-DTMMLGADFYETDAE 368 (415)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~i-~~~~i~~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~-~sii~~~~~~~~~~~ 368 (415)
+.+...+.+.+.|++++.| +++.|.+|+||++|+|+ ++.|.+++||++|.||+++.|. +++|+++++|.+.+.
T Consensus 279 I~~~~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~ 354 (481)
T PRK14358 279 IEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVE 354 (481)
T ss_pred EeCCcEEeCCcEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCCEE
Confidence 3444444445555666666 56777788888888888 6888888888888888888886 577777777777544
|
|
| >PRK13627 carnitine operon protein CaiE; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=2e-08 Score=87.93 Aligned_cols=66 Identities=12% Similarity=0.107 Sum_probs=41.6
Q ss_pred ccceECCCCEEc-ceEEee----eEEccCcEECCCcEEee-----cEEeCCccccchhHHHhhhhCCCcceEeCCCCEEe
Q 014953 320 VDSIISHGSFIT-SSFIEH----SVVGIRSRINANVHLKD-----TMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK 389 (415)
Q Consensus 320 ~~~~ig~~~~I~-~~~i~~----svig~~~~ig~~~~i~~-----sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~ 389 (415)
.++.||++|.|+ +++|.. .+|+++|.||++|.|.. ++|+++ +.||.++.+.
T Consensus 27 g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~-------------------~~Ig~~a~i~ 87 (196)
T PRK13627 27 GDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGEN-------------------GHIGHGAILH 87 (196)
T ss_pred CceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCC-------------------CEECCCcEEe
Confidence 356667777776 566643 47788888888887744 667777 5555555555
Q ss_pred eeEECCCeEEcCCcc
Q 014953 390 YEQLKPICHIVETKY 404 (415)
Q Consensus 390 ~~~i~~~~~i~~~~~ 404 (415)
+|+|++++.|+.++.
T Consensus 88 g~vIG~~v~IG~ga~ 102 (196)
T PRK13627 88 GCVIGRDALVGMNSV 102 (196)
T ss_pred eEEECCCCEECcCCc
Confidence 555555555555543
|
|
| >cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc | Back alignment and domain information |
|---|
Probab=98.83 E-value=1e-08 Score=91.20 Aligned_cols=34 Identities=18% Similarity=-0.047 Sum_probs=17.9
Q ss_pred eEeCCCCEEe-eeEECCCeEEcCCcccCccccccc
Q 014953 380 VGIGENTKIK-YEQLKPICHIVETKYDSSTISRFS 413 (415)
Q Consensus 380 ~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~ 413 (415)
|.||.++.+. ++.|++++.|++++.+.+.+.+++
T Consensus 157 ~~ig~~~~v~~~~~ig~~~~i~~~s~v~~~~~~~~ 191 (205)
T cd03352 157 VIIGGQVGIAGHLTIGDGVVIGAGSGVTSIVPPGE 191 (205)
T ss_pred eEEcCCCEEeCCcEECCCCEEcCCCEEeeECCCCC
Confidence 4444444444 555555555555555555554443
|
This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.8e-08 Score=83.65 Aligned_cols=57 Identities=11% Similarity=0.129 Sum_probs=34.0
Q ss_pred CCCCccccCccCCCeee-cCCccc-cceECCCCEEc-ceEE-eeeEEccCcEECCCcEEee
Q 014953 298 ATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKD 354 (415)
Q Consensus 298 ~~~~~~~~~~i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i-~~svig~~~~ig~~~~i~~ 354 (415)
+...+..++.+.+++.+ .++.+. ++.||++|.|+ ++.| .++.||++|.|++++.|.+
T Consensus 6 ~~~~i~~~~~Ig~~~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~igg 66 (139)
T cd03350 6 PGAIIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGG 66 (139)
T ss_pred CCcEECCCCEECCCCEECCCCEEccCCEECCCeEEcCCCEECCCCEECCCCEECCCCEECC
Confidence 33444444445554444 333332 55677777776 4655 4678888888888877764
|
It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs. |
| >COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.7e-08 Score=84.72 Aligned_cols=92 Identities=12% Similarity=0.030 Sum_probs=70.8
Q ss_pred ccCCCCCccccCccCCCeee-cCCccc----cceECCCCEEc-ceEEe-----eeEEccCcEECCCcEEeecEEeCCccc
Q 014953 295 FYDATKPIYTSRRNLPPSKI-DDSKIV----DSIISHGSFIT-SSFIE-----HSVVGIRSRINANVHLKDTMMLGADFY 363 (415)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~i-~~~~i~----~~~ig~~~~I~-~~~i~-----~svig~~~~ig~~~~i~~sii~~~~~~ 363 (415)
+++|++.+..++.|+.++.+ .++.++ .-.||++|-|. ++++. .+.||++|+||.+|.|-+|.|.++
T Consensus 19 ~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHGc~Ig~~--- 95 (176)
T COG0663 19 FVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHGCTIGDN--- 95 (176)
T ss_pred EECCCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEEeEECCC---
Confidence 66677777777777777777 666664 56789999998 57763 589999999999999999999999
Q ss_pred cchhHHHhhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCccc
Q 014953 364 ETDAEVASLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYD 405 (415)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~ 405 (415)
|.||=|+.|- +|.||+++.|++++-+
T Consensus 96 ----------------~lIGmgA~vldga~IG~~~iVgAgalV 122 (176)
T COG0663 96 ----------------VLIGMGATVLDGAVIGDGSIVGAGALV 122 (176)
T ss_pred ----------------cEEecCceEeCCcEECCCcEEccCCcc
Confidence 6777777765 4777777777777643
|
|
| >PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=9.9e-09 Score=101.64 Aligned_cols=65 Identities=15% Similarity=0.103 Sum_probs=56.1
Q ss_pred cCccCCCeeecCCccccceECCCCEEc-ceEEeeeEEcc-------------------CcEECCCcEEeecEEeCCcccc
Q 014953 305 SRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGI-------------------RSRINANVHLKDTMMLGADFYE 364 (415)
Q Consensus 305 ~~~i~~~~~i~~~~i~~~~ig~~~~I~-~~~i~~svig~-------------------~~~ig~~~~i~~sii~~~~~~~ 364 (415)
.+.|+++|.+.++.|++|+||++|+|+ ++.|++|+|+. +|.||++|.|.+|++++++.|+
T Consensus 308 ~~~ig~~~~i~~~~i~~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~i~ 387 (429)
T PRK02862 308 ESIIAEGCIIKNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKNARIG 387 (429)
T ss_pred eCEECCCCEECCcEEEEEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEEECCCcEEC
Confidence 467888888877888999999999998 79999999986 7999999999999999996555
Q ss_pred chhHH
Q 014953 365 TDAEV 369 (415)
Q Consensus 365 ~~~~~ 369 (415)
+++.+
T Consensus 388 ~~~~~ 392 (429)
T PRK02862 388 NNVRI 392 (429)
T ss_pred CCcEE
Confidence 55444
|
|
| >cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.5e-08 Score=86.50 Aligned_cols=102 Identities=14% Similarity=0.194 Sum_probs=69.9
Q ss_pred CCCeee-cCCcc-ccceECCCCEEc-ceEEe----eeEEccCcEECCCcEEeec-----------EEeCCccccchhHHH
Q 014953 309 LPPSKI-DDSKI-VDSIISHGSFIT-SSFIE----HSVVGIRSRINANVHLKDT-----------MMLGADFYETDAEVA 370 (415)
Q Consensus 309 ~~~~~i-~~~~i-~~~~ig~~~~I~-~~~i~----~svig~~~~ig~~~~i~~s-----------ii~~~~~~~~~~~~~ 370 (415)
++.+.+ +++.+ .++.||++|.|+ ++.|. .++||++|.|++++.|.++ .|++++.+..++.+.
T Consensus 3 ~~~~~I~~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~ 82 (164)
T cd04646 3 APGAVVCQESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCE 82 (164)
T ss_pred CCCcEECCCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEE
Confidence 344444 33333 367788888887 57674 3699999999999999876 355666666666553
Q ss_pred -hhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCcc--ccccc
Q 014953 371 -SLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSST--ISRFS 413 (415)
Q Consensus 371 -~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~--~~~~~ 413 (415)
+.++++ |.||.+|.|. +++|++++.|++++.+.+- +..++
T Consensus 83 ~~~IGd~---~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~~~i~~~~ 126 (164)
T cd04646 83 ALKIGNN---NVFESKSFVGKNVIITDGCIIGAGCKLPSSEILPENT 126 (164)
T ss_pred eeEECCC---CEEeCCCEECCCCEECCCCEEeCCeEECCCcEECCCe
Confidence 466777 7778777775 7777888888777766553 54443
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.2e-09 Score=103.55 Aligned_cols=65 Identities=15% Similarity=0.088 Sum_probs=51.8
Q ss_pred cCccCCCeee-cCCccc-cceECCCCEEc-ceEEeeeEEccCcEECCCcEEe-ecEEeCCccccchhHH
Q 014953 305 SRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLK-DTMMLGADFYETDAEV 369 (415)
Q Consensus 305 ~~~i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~-~sii~~~~~~~~~~~~ 369 (415)
.+.|++++.+ +++.|. ++.||++|+|+ ++.|.+|+||++|+||+++.|. +|+|++++.|++++.+
T Consensus 268 ~~~I~~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i 336 (446)
T PRK14353 268 DTVIGRDVVIEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEV 336 (446)
T ss_pred ceEECCCCEECCCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEE
Confidence 4455556666 455554 67788888888 5888899999999999999998 7999999998888755
|
|
| >cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.6e-08 Score=84.88 Aligned_cols=45 Identities=11% Similarity=0.043 Sum_probs=34.1
Q ss_pred ceECCCCEEc-ceEEee-------------eEEccCcEECCCcEEeecEEeCCccccch
Q 014953 322 SIISHGSFIT-SSFIEH-------------SVVGIRSRINANVHLKDTMMLGADFYETD 366 (415)
Q Consensus 322 ~~ig~~~~I~-~~~i~~-------------svig~~~~ig~~~~i~~sii~~~~~~~~~ 366 (415)
+.||++|.|+ ++.|.. ++||++|.|++++.+.++.++++++|+.+
T Consensus 43 v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~Ig~~v~Ig~~ 101 (161)
T cd03359 43 VSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAAQIGSYVHIGKN 101 (161)
T ss_pred eEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEeeEEcCCcEECCC
Confidence 5677777776 566643 57999999999999999999888555554
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.4e-08 Score=99.94 Aligned_cols=57 Identities=16% Similarity=0.165 Sum_probs=52.2
Q ss_pred ccCccCCCeeecCCccccceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCC
Q 014953 304 TSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGA 360 (415)
Q Consensus 304 ~~~~i~~~~~i~~~~i~~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~ 360 (415)
+.+.++++|.|.++.|.+|+||++|+|+ ++.|++|+|+++|+||++|+|.+|+++++
T Consensus 314 ~~~~ig~~~~I~~~~i~~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~~ii~~~ 371 (407)
T PRK00844 314 QDSLVSAGSIISGATVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRRAILDKN 371 (407)
T ss_pred EeCEEcCCCEECCeeeEcCEECCCCEECCCCEEeeeEECCCCEECCCCEEEeeEECCC
Confidence 4567788888877888899999999999 79999999999999999999999999999
|
|
| >cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.9e-08 Score=83.05 Aligned_cols=78 Identities=18% Similarity=0.098 Sum_probs=56.8
Q ss_pred ccceECCCCEEc-ceEEee----eEEccCcEECCCcEEee-----cEEeCCccccchhHHHhhhhCCCcceEeCCCCEEe
Q 014953 320 VDSIISHGSFIT-SSFIEH----SVVGIRSRINANVHLKD-----TMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK 389 (415)
Q Consensus 320 ~~~~ig~~~~I~-~~~i~~----svig~~~~ig~~~~i~~-----sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~ 389 (415)
.++.||++|.|+ ++.|.. .+||++|.|+++|.|.. ++|++++++..++.+. + +.||++|.|.
T Consensus 17 ~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~-----~---~~Ig~~~~Ig 88 (154)
T cd04650 17 GDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVH-----G---AKVGNYVIVG 88 (154)
T ss_pred eeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEE-----C---cEECCCCEEc
Confidence 367788888888 677765 49999999999999986 7888886665555432 1 5666666666
Q ss_pred -eeEECCCeEEcCCccc
Q 014953 390 -YEQLKPICHIVETKYD 405 (415)
Q Consensus 390 -~~~i~~~~~i~~~~~~ 405 (415)
++++..+++|++++..
T Consensus 89 ~~~~i~~~~~Ig~~~~v 105 (154)
T cd04650 89 MGAILLNGAKIGDHVII 105 (154)
T ss_pred CCCEEeCCCEECCCCEE
Confidence 6666666666666654
|
It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group. |
| >cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.7e-08 Score=82.64 Aligned_cols=96 Identities=14% Similarity=0.111 Sum_probs=71.5
Q ss_pred CCCeee-cCCcc-ccceECCCCEEc-ceEEee----eEEccCcEECCCcEEeec-----EEeCCccccchhHHH-hhhhC
Q 014953 309 LPPSKI-DDSKI-VDSIISHGSFIT-SSFIEH----SVVGIRSRINANVHLKDT-----MMLGADFYETDAEVA-SLLAE 375 (415)
Q Consensus 309 ~~~~~i-~~~~i-~~~~ig~~~~I~-~~~i~~----svig~~~~ig~~~~i~~s-----ii~~~~~~~~~~~~~-~~~~~ 375 (415)
++++++ +++.| .++.||++|.|+ +++|.. ++||++|.|+++++|.++ +|++++.+..++.+. +.+++
T Consensus 3 ~~~~~i~~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~ 82 (153)
T cd04645 3 DPSAFIAPNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGD 82 (153)
T ss_pred cCCeEECCCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECC
Confidence 445555 44444 367788888888 566653 599999999999999984 999999998887664 35566
Q ss_pred CCcceEeCCCCEEe-eeEECCCeEEcCCcccCc
Q 014953 376 GRVPVGIGENTKIK-YEQLKPICHIVETKYDSS 407 (415)
Q Consensus 376 ~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~ 407 (415)
+ +.||.++.+. +++|++++.|++++.+.+
T Consensus 83 ~---~~Ig~~~~v~~~~~ig~~~~ig~~~~v~~ 112 (153)
T cd04645 83 N---CLIGMGAIILDGAVIGKGSIVAAGSLVPP 112 (153)
T ss_pred C---CEECCCCEEcCCCEECCCCEECCCCEECC
Confidence 6 7777777776 777777877777765544
|
coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. |
| >TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.8e-08 Score=95.46 Aligned_cols=32 Identities=13% Similarity=0.043 Sum_probs=19.1
Q ss_pred eCCCCEEe-eeEECCCeEEcCCcccCccccccc
Q 014953 382 IGENTKIK-YEQLKPICHIVETKYDSSTISRFS 413 (415)
Q Consensus 382 Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~ 413 (415)
||.++.|. ++.||+++.|+.++.+.+.+.+++
T Consensus 262 ig~~~~I~~~v~Ig~~~~ig~~s~V~~~v~~~~ 294 (324)
T TIGR01853 262 IGGQVGVAGHLEIGDNVTIGAKSGVTKSIPPPG 294 (324)
T ss_pred EccccccccCCEECCCCEEccCCEeCCcCCCCc
Confidence 33333333 566677777777777777666554
|
This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate). |
| >PRK11132 cysE serine acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=7.7e-09 Score=94.30 Aligned_cols=40 Identities=20% Similarity=0.148 Sum_probs=33.8
Q ss_pred hhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 372 LLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 372 ~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
.|+++ |.||.||.|. ++.||+++.|++++.+.+.+-+++.
T Consensus 195 ~IGd~---V~IGaga~Ilggv~IG~~a~IGAgSvV~~dVp~~~~ 235 (273)
T PRK11132 195 KIREG---VMIGAGAKILGNIEVGRGAKIGAGSVVLQPVPPHTT 235 (273)
T ss_pred EECCC---cEEcCCCEEcCCCEECCCCEECCCCEECcccCCCcE
Confidence 44555 8999999997 9999999999999998888877764
|
|
| >PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=8e-09 Score=103.43 Aligned_cols=94 Identities=17% Similarity=0.163 Sum_probs=70.0
Q ss_pred ccCCCeee-cCCccc-cceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHH--hhhhCCCcceE
Q 014953 307 RNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVA--SLLAEGRVPVG 381 (415)
Q Consensus 307 ~i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~--~~~~~~~~~~~ 381 (415)
.+++++.| +++.|. +++||++|.|+ ++.|.+|+||++|.|++++.|.+|+++++++|++++.+. +.++++ +.
T Consensus 267 ~ig~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~---~~ 343 (456)
T PRK09451 267 THGRDVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEG---AH 343 (456)
T ss_pred EECCCCEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCC---ce
Confidence 35556666 566665 68999999999 699999999999999999999999999998888887664 344555 44
Q ss_pred eCCCCEEe-----------------eeEECCCeEEcCCc
Q 014953 382 IGENTKIK-----------------YEQLKPICHIVETK 403 (415)
Q Consensus 382 Ig~~~~i~-----------------~~~i~~~~~i~~~~ 403 (415)
||+++.++ +|.||+++.|++++
T Consensus 344 ig~~~~i~~~~i~~~~~~~~~~~~g~~~ig~~~~ig~~~ 382 (456)
T PRK09451 344 VGNFVEMKKARLGKGSKAGHLTYLGDAEIGDNVNIGAGT 382 (456)
T ss_pred eccceeeeceeeCCCCccCccccccccEECCCCEEcCCe
Confidence 55544433 35666666666665
|
|
| >cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.7e-08 Score=79.78 Aligned_cols=95 Identities=12% Similarity=0.136 Sum_probs=58.7
Q ss_pred CCccccCccCCCeee-cCCccc-cceECCCCEEcceEE-eeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCC
Q 014953 300 KPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFITSSFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEG 376 (415)
Q Consensus 300 ~~~~~~~~i~~~~~i-~~~~i~-~~~ig~~~~I~~~~i-~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~ 376 (415)
..+..++.+++++.+ +++.+. ++.||.+|.|.. .+ .+++|+.+|.||+++.|. +.+.++ ......++++
T Consensus 8 ~~V~~~a~IG~GtvI~~gavV~~~a~IG~~~iIn~-~ig~~a~Ighd~~IG~~~~I~-~~l~G~------~~~pV~IG~~ 79 (147)
T cd04649 8 DRVRLGAYLAEGTTVMHEGFVNFNAGTLGNCMVEG-RISSGVIVGKGSDVGGGASIM-GTLSGG------GNNVISIGKR 79 (147)
T ss_pred CEECCCCEECCCcEECCCCEEccCCEECCCeEECC-cccCCEEECCCCEECCCCEEE-EECCCC------cccCEEECCC
Confidence 344445555555555 444443 566666666642 23 358888888888888888 444333 0011233344
Q ss_pred CcceEeCCCCEEeeeEECCCeEEcCCcccC
Q 014953 377 RVPVGIGENTKIKYEQLKPICHIVETKYDS 406 (415)
Q Consensus 377 ~~~~~Ig~~~~i~~~~i~~~~~i~~~~~~~ 406 (415)
|.||.|+.| +..||++++|++|+.+.
T Consensus 80 ---~~IG~ga~I-gv~IG~~~vIGaGsvV~ 105 (147)
T cd04649 80 ---CLLGANSGI-GISLGDNCIVEAGLYVT 105 (147)
T ss_pred ---CEECCCCEE-eEEECCCCEECCCCEEe
Confidence 888888888 78888888888887643
|
THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif. |
| >TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.4e-08 Score=86.53 Aligned_cols=59 Identities=14% Similarity=0.165 Sum_probs=50.2
Q ss_pred ccCCCCCccccCccCCCeee-cCCccccceECCCCEEc-ceEEeeeEEccCcEECCCcEEee
Q 014953 295 FYDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKD 354 (415)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~i-~~~~i~~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~ 354 (415)
.+++.+.+. .+.+++++.| +++.+.++.||.+|.|+ ++.+.+++||++|.|+++++|..
T Consensus 10 ~I~~~a~i~-~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~ 70 (204)
T TIGR03308 10 TLHPTAELT-ESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINA 70 (204)
T ss_pred eECCCcEEe-ccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEECC
Confidence 456666664 4678888888 78888999999999999 69999999999999999999864
|
This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein. |
| >PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.6e-08 Score=92.17 Aligned_cols=74 Identities=16% Similarity=0.259 Sum_probs=39.9
Q ss_pred cceECCCCEEc-ceEEe-eeEEccCcEECCCcEEee---------cEEeCCccccchhHHHhhhhCCCcceEeCCCCEEe
Q 014953 321 DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKD---------TMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK 389 (415)
Q Consensus 321 ~~~ig~~~~I~-~~~i~-~svig~~~~ig~~~~i~~---------sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~ 389 (415)
++.||++|+|+ ++.|. +++||++|+|++++.|.+ ++|++++.|+.++.+ .+| +.||++|+|.
T Consensus 132 Ga~Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIgDnv~IGa~s~I----~~G---v~IGdgavIg 204 (272)
T PRK11830 132 GAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEV----VEG---VIVEEGSVLG 204 (272)
T ss_pred CCEECCCcEEccccEECCCCEECCCcEECCCccCCCCccccCcCCeEEcCCCEECCCCEE----cCC---CEECCCCEEc
Confidence 45566666666 35553 357777777777776653 566666555544333 222 4444444444
Q ss_pred -eeEECCCeEEcC
Q 014953 390 -YEQLKPICHIVE 401 (415)
Q Consensus 390 -~~~i~~~~~i~~ 401 (415)
+++|++++.|.+
T Consensus 205 ag~vV~~gt~I~~ 217 (272)
T PRK11830 205 MGVFLGQSTKIYD 217 (272)
T ss_pred CCCEEcCCeEECc
Confidence 444444444443
|
|
| >PLN02241 glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.8e-08 Score=100.04 Aligned_cols=98 Identities=13% Similarity=0.008 Sum_probs=78.7
Q ss_pred CccCCCeeecCCccccceECCCCEEc-ceEEeeeEEcc----------------C---cEECCCcEEeecEEeCCccccc
Q 014953 306 RRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGI----------------R---SRINANVHLKDTMMLGADFYET 365 (415)
Q Consensus 306 ~~i~~~~~i~~~~i~~~~ig~~~~I~-~~~i~~svig~----------------~---~~ig~~~~i~~sii~~~~~~~~ 365 (415)
+.++++|.|.++.|++|+||++|+|+ ++.|.+|+|+. + ++||++|+|.+++|++++.|++
T Consensus 316 s~I~~~~~I~~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~v~Ig~ 395 (436)
T PLN02241 316 SIISHGCFLRECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARIGK 395 (436)
T ss_pred eEEcCCcEEcCeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCCCEECC
Confidence 67888888887788999999999999 79999999966 3 3899999999999999999998
Q ss_pred hhHHHhhhhCCCcceEeCCCCEEe-e-eEECCCeEEcCCcc
Q 014953 366 DAEVASLLAEGRVPVGIGENTKIK-Y-EQLKPICHIVETKY 404 (415)
Q Consensus 366 ~~~~~~~~~~~~~~~~Ig~~~~i~-~-~~i~~~~~i~~~~~ 404 (415)
++.+....+-.+ +.++|++|.+. + ++||+++.|.+++.
T Consensus 396 ~~~i~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 435 (436)
T PLN02241 396 NVVIINKDGVQE-ADREEEGYYIRSGIVVILKNAVIPDGTV 435 (436)
T ss_pred CcEEecccccCC-ccccccccEEeCCEEEEcCCcEeCCCCC
Confidence 876653211111 25678888887 5 79999999988764
|
|
| >PRK10502 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.5e-08 Score=85.07 Aligned_cols=102 Identities=11% Similarity=0.066 Sum_probs=62.4
Q ss_pred cccCccCCCeeecCCccccceECCCCEEc-ceEEe---eeEEccCcEECCCcEEeecEEeCCccccch----hHHH-hhh
Q 014953 303 YTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE---HSVVGIRSRINANVHLKDTMMLGADFYETD----AEVA-SLL 373 (415)
Q Consensus 303 ~~~~~i~~~~~i~~~~i~~~~ig~~~~I~-~~~i~---~svig~~~~ig~~~~i~~sii~~~~~~~~~----~~~~-~~~ 373 (415)
..++.+.+++.+... .+..||++|.|+ ++.|. ...||++|.|++++.|... .|...+ .... ..|
T Consensus 55 G~~~~I~~~a~i~~~--~~~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~-----~h~~~~~~~~~~~~~i~I 127 (182)
T PRK10502 55 GKGVVIRPSVRITYP--WKLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTG-----SHDYSDPHFDLNTAPIVI 127 (182)
T ss_pred CCCcEEcCCEEEecC--CeEEECCCeEECCCceecccCceEECCCcEECCCeEEECC-----CCCCcCCCcccccCCEEE
Confidence 334444455544110 145667777776 45553 5778888888877776421 111000 0001 133
Q ss_pred hCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 374 AEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 374 ~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
+++ |.||.+|.|. ++.||+++.|++++.+.+.+.+++.
T Consensus 128 gd~---~~Ig~~a~I~~Gv~Ig~~~vIga~svV~~~v~~~~v 166 (182)
T PRK10502 128 GEG---CWLAADVFVAPGVTIGSGAVVGARSSVFKSLPANTI 166 (182)
T ss_pred cCC---cEEcCCCEEcCCCEECCCCEECCCCEEecccCCCcE
Confidence 444 8888888886 8999999999999988888888764
|
|
| >PLN02296 carbonate dehydratase | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.6e-08 Score=88.62 Aligned_cols=106 Identities=12% Similarity=0.075 Sum_probs=76.0
Q ss_pred CccccCccCCCeeecCCccccceECCCCEEc-ceEEe----eeEEccCcEECCCcEEe-----------ecEEeCCcccc
Q 014953 301 PIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE----HSVVGIRSRINANVHLK-----------DTMMLGADFYE 364 (415)
Q Consensus 301 ~~~~~~~i~~~~~i~~~~i~~~~ig~~~~I~-~~~i~----~svig~~~~ig~~~~i~-----------~sii~~~~~~~ 364 (415)
.+.+.+.+.+++.+. .++.||++|.|. +++|. +.+||++|.|+++|.|. +++|++++.|+
T Consensus 54 ~I~~~~~I~p~A~V~----G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG 129 (269)
T PLN02296 54 VVDKDAFVAPSASVI----GDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIG 129 (269)
T ss_pred ccCCCCEECCCcEEE----cceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEEC
Confidence 344444555555442 256667777776 56554 35899999999999995 68999999999
Q ss_pred chhHH-HhhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCcc--ccccc
Q 014953 365 TDAEV-ASLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSST--ISRFS 413 (415)
Q Consensus 365 ~~~~~-~~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~--~~~~~ 413 (415)
.++.+ .+.++++ |.||.++.|. ++.|++++.|++++.+.+. |..++
T Consensus 130 ~~avI~g~~Igd~---v~IG~ga~I~~gv~Ig~~a~IgagSvV~~~~~I~~~~ 179 (269)
T PLN02296 130 HSAVLHGCTVEDE---AFVGMGATLLDGVVVEKHAMVAAGALVRQNTRIPSGE 179 (269)
T ss_pred CCceecCCEECCC---cEECCCcEECCCeEECCCCEECCCCEEecCCEeCCCe
Confidence 99876 4567777 8888888886 8888888888888866554 44444
|
|
| >COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl] | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.3e-08 Score=90.27 Aligned_cols=128 Identities=17% Similarity=0.098 Sum_probs=75.7
Q ss_pred cCCHHHHHHHHHhhcCCC-CCCCccCCCCCccccCccCCCeee-cCCccc-cceECCCCEEc-ceEE-eeeEEccCcEEC
Q 014953 273 IGTIRSFFEANLALTAHP-PMFSFYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFI-EHSVVGIRSRIN 347 (415)
Q Consensus 273 i~t~~~y~~an~~~l~~~-~~~~~~~~~~~~~~~~~i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i-~~svig~~~~ig 347 (415)
..+|.-.+....+++.+. ....-+.|.+.+.+.+.+.+++.+ +++.|. ++.||+||+|+ +++| .++.||++|.|.
T Consensus 78 ~~~P~~~fA~~~~~f~~~~~~~~~I~~~A~i~~~A~i~~~~~ig~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~ 157 (338)
T COG1044 78 VKDPYLAFAKVAQLFYRPFNPAAGIHPTAVIDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIH 157 (338)
T ss_pred eCCchHHHHHHHHHhccCCccccccCccccccCcCccCCCCccCCCeEECCCCEECCCcEECCCCEECCCcEECCCcEEc
Confidence 445666666665555432 222334455555555555554444 344442 55556666665 4444 467777777777
Q ss_pred CCcEEee-cEEeCCccccchhHHHh--hhhCCCcceEeCCCCEE---eeeEECCCeEEcCCcc
Q 014953 348 ANVHLKD-TMMLGADFYETDAEVAS--LLAEGRVPVGIGENTKI---KYEQLKPICHIVETKY 404 (415)
Q Consensus 348 ~~~~i~~-sii~~~~~~~~~~~~~~--~~~~~~~~~~Ig~~~~i---~~~~i~~~~~i~~~~~ 404 (415)
+++.|.. +.|++++.|.+|+++.. +.+.+ +.+| +..+ .+.+|+++|.||++|.
T Consensus 158 ~~v~I~~~~~IG~~v~I~~GavIG~dgFg~a~---~~~g-~~Ki~q~g~V~Igd~VeIGanT~ 216 (338)
T COG1044 158 PNVTIYHNVVIGNNVIIHSGAVIGADGFGYAG---TAIG-WVKIPQIGRVIIGDDVEIGANTT 216 (338)
T ss_pred CCCEEecCcEECCceEECCCCEEccCcccccc---ccCC-ceEcceeceEEECCceEEcccce
Confidence 7777766 77777777777776664 33333 4566 3333 2788888888888875
|
|
| >cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.3e-08 Score=70.90 Aligned_cols=73 Identities=18% Similarity=0.200 Sum_probs=47.1
Q ss_pred ceECCCCEEc-ceEEe-eeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEe-eeEECCCeE
Q 014953 322 SIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-YEQLKPICH 398 (415)
Q Consensus 322 ~~ig~~~~I~-~~~i~-~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~ 398 (415)
+.||++|.|+ ++.|. +++||++|.|++++.|.++.... ......++++ +.||.+|.+. ++.|++++.
T Consensus 1 ~~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~-------~~~~~~ig~~---~~v~~~~~i~~~~~ig~~~~ 70 (78)
T cd00208 1 VFIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPN-------EKNPTIIGDN---VEIGANAVIHGGVKIGDNAV 70 (78)
T ss_pred CEECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccCCC-------ccCCcEECCC---cEECCCCEEeCCCEECCCCE
Confidence 3567777777 46665 49999999999999998763321 0000111122 6777777776 677777777
Q ss_pred EcCCcc
Q 014953 399 IVETKY 404 (415)
Q Consensus 399 i~~~~~ 404 (415)
|++++.
T Consensus 71 i~~~s~ 76 (78)
T cd00208 71 IGAGAV 76 (78)
T ss_pred ECcCcE
Confidence 777654
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. |
| >PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.3e-08 Score=97.79 Aligned_cols=58 Identities=12% Similarity=0.038 Sum_probs=53.8
Q ss_pred ccCccCCCeeecCCccccceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCc
Q 014953 304 TSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGAD 361 (415)
Q Consensus 304 ~~~~i~~~~~i~~~~i~~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~ 361 (415)
.++.|+++|++.++.|++|+||++|+|+ ++.|++|+|+++|.||++++|.+|+|++++
T Consensus 326 ~~s~i~~~~~i~~~~i~~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i~~~ii~~~~ 384 (425)
T PRK00725 326 INSLVSGGCIISGAVVRRSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLRRCVIDRGC 384 (425)
T ss_pred EeCEEcCCcEEcCccccCCEECCCCEECCCCEEeeeEEcCCCEECCCCEEeeEEECCCC
Confidence 4678889998888889999999999999 799999999999999999999999999994
|
|
| >TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.3e-08 Score=89.00 Aligned_cols=94 Identities=15% Similarity=0.104 Sum_probs=70.6
Q ss_pred ccCCCCCccccCccCCCeee-cCCccc-cceECCCCEEc-ceEEe-eeEEccCcEECCCcEEee---------cEEeCCc
Q 014953 295 FYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKD---------TMMLGAD 361 (415)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i~-~svig~~~~ig~~~~i~~---------sii~~~~ 361 (415)
.+++.+.+...+.+++++.+ .++.|. +++||++|.|+ ++.|. +|+||++|.||+++.|.+ ++|++++
T Consensus 88 ~I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~v 167 (231)
T TIGR03532 88 RIEPGAIIRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNV 167 (231)
T ss_pred EECCCCEEeCCeEECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCCc
Confidence 45677777778888899988 777775 79999999998 68884 899999999999999975 6777776
Q ss_pred cccchhHHHhhhhCCCcceEeCCCCEEe-eeEECCCeEEcC
Q 014953 362 FYETDAEVASLLAEGRVPVGIGENTKIK-YEQLKPICHIVE 401 (415)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~ 401 (415)
+++.+ ++|.+++.|. +|+|++++.|..
T Consensus 168 ~IG~g-------------svI~~g~~Ig~~~~IgagsvV~~ 195 (231)
T TIGR03532 168 LIGAN-------------AVILEGVRVGKGAVVAAGAIVTE 195 (231)
T ss_pred EECCC-------------CEEcCCCEECCCCEECCCCEEcc
Confidence 66655 4555555554 555555555543
|
Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate. |
| >PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=3e-08 Score=99.93 Aligned_cols=97 Identities=11% Similarity=0.110 Sum_probs=49.6
Q ss_pred CccCCCeee-cCCccccceECCCCEEcceEEeeeEEccCcEECCCcEEe-ecEEeCCccccchhHHH-hhhhCCCcceEe
Q 014953 306 RRNLPPSKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLK-DTMMLGADFYETDAEVA-SLLAEGRVPVGI 382 (415)
Q Consensus 306 ~~i~~~~~i-~~~~i~~~~ig~~~~I~~~~i~~svig~~~~ig~~~~i~-~sii~~~~~~~~~~~~~-~~~~~~~~~~~I 382 (415)
+.|+++|.| +++.|.+++||++|.|+++.+.+|+|+++|.||+++.+. +++|+++++++..+.+. +.++++ +.|
T Consensus 290 v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~~~~~~~I~~~---~~i 366 (482)
T PRK14352 290 TTIGEDAVVGPDTTLTDVTVGEGASVVRTHGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAFVETKNATIGRG---TKV 366 (482)
T ss_pred CEECCCCEECCCCEEecCEECCCCEEeeeeeecCEEcCCCEECCCeEecCCcEEcCCCEECCcEEEcccEECCC---cEE
Confidence 333333333 344444445555555544444555555555555555554 34444444444433321 233333 444
Q ss_pred CCCCEEeeeEECCCeEEcCCccc
Q 014953 383 GENTKIKYEQLKPICHIVETKYD 405 (415)
Q Consensus 383 g~~~~i~~~~i~~~~~i~~~~~~ 405 (415)
+..+.+.+|+||+++.|++++..
T Consensus 367 ~~~~~i~~~~Ig~~~~IG~~~~i 389 (482)
T PRK14352 367 PHLTYVGDADIGEHSNIGASSVF 389 (482)
T ss_pred ccCceecccEECCCcEECCCcEE
Confidence 44455556788888888888643
|
|
| >PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.5e-08 Score=98.92 Aligned_cols=75 Identities=21% Similarity=0.231 Sum_probs=51.0
Q ss_pred cceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHH--hhhhCCCcceEeCCCCEEeeeEECCCe
Q 014953 321 DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVA--SLLAEGRVPVGIGENTKIKYEQLKPIC 397 (415)
Q Consensus 321 ~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~--~~~~~~~~~~~Ig~~~~i~~~~i~~~~ 397 (415)
++.||++|.|+ ++.|.+|+||++|.|+ ++.+.+++|++++.|+.++.+. +.++++ |.||.++.|.+++|++++
T Consensus 283 ~~~Ig~~~~I~~~~~i~~~~ig~~~~I~-~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~---~~i~~~~~i~~~~i~~~~ 358 (458)
T PRK14354 283 NTVIGEDCVIGPGSRIVDSTIGDGVTIT-NSVIEESKVGDNVTVGPFAHLRPGSVIGEE---VKIGNFVEIKKSTIGEGT 358 (458)
T ss_pred ceEECCCCEECCCcEEeccEECCCCEEE-EEEEeCCEECCCcEECCceEecCCCEEeCC---cEECCceEEeeeEECCCC
Confidence 56778888887 6778888888888887 4677788888887777776554 355665 556655555444444444
Q ss_pred EE
Q 014953 398 HI 399 (415)
Q Consensus 398 ~i 399 (415)
.+
T Consensus 359 ~i 360 (458)
T PRK14354 359 KV 360 (458)
T ss_pred Ee
Confidence 33
|
|
| >COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.2e-08 Score=93.81 Aligned_cols=63 Identities=24% Similarity=0.366 Sum_probs=55.5
Q ss_pred ccceECCCCEEc-ceEEe-eeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEeeeEECCCe
Q 014953 320 VDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKYEQLKPIC 397 (415)
Q Consensus 320 ~~~~ig~~~~I~-~~~i~-~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~~i~~~~ 397 (415)
.+++||++|+|+ ++.|. +|+||++|+||++++|.+|+||++ |.||.+++|.+|+|+.++
T Consensus 260 gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~-------------------~~i~~~~~i~~sIi~~~~ 320 (358)
T COG1208 260 GPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDN-------------------VVIGHGSYIGDSIIGENC 320 (358)
T ss_pred CCEEECCCCEECCCCEECCCcEECCCCEECCCcEEEeeEEEcC-------------------CEECCCCEEeeeEEcCCc
Confidence 578888888888 57774 699999999999999999999999 788888888888888888
Q ss_pred EEcC
Q 014953 398 HIVE 401 (415)
Q Consensus 398 ~i~~ 401 (415)
+|++
T Consensus 321 ~ig~ 324 (358)
T COG1208 321 KIGA 324 (358)
T ss_pred EECC
Confidence 8886
|
|
| >PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.7e-08 Score=89.15 Aligned_cols=98 Identities=14% Similarity=0.198 Sum_probs=45.5
Q ss_pred ccCccCCCeee-cCCccccceECCCCEEc-ceEE-eeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcce
Q 014953 304 TSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPV 380 (415)
Q Consensus 304 ~~~~i~~~~~i-~~~~i~~~~ig~~~~I~-~~~i-~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~ 380 (415)
+.+.++.+++| +++.|..+.|+.|+.|+ ++.| .++.||++|.||++++|.......+.. +......+.|+++ |
T Consensus 108 p~a~V~~ga~Ig~gavI~p~~V~iGa~Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~~-~~~~~~~viIgDn---v 183 (272)
T PRK11830 108 PGAVVRRGAYIAPNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVL-EPLQANPVIIEDN---C 183 (272)
T ss_pred CCeEECCCCEECCCcEEEEEEECCCCEECCCcEEccccEECCCCEECCCcEECCCccCCCCc-cccCcCCeEEcCC---C
Confidence 33344444444 33433444455555555 3333 234444444444444444433333210 0000112455666 6
Q ss_pred EeCCCCEEe-eeEECCCeEEcCCccc
Q 014953 381 GIGENTKIK-YEQLKPICHIVETKYD 405 (415)
Q Consensus 381 ~Ig~~~~i~-~~~i~~~~~i~~~~~~ 405 (415)
.||.+|.|. +++||+++.|++++.+
T Consensus 184 ~IGa~s~I~~Gv~IGdgavIgag~vV 209 (272)
T PRK11830 184 FIGARSEVVEGVIVEEGSVLGMGVFL 209 (272)
T ss_pred EECCCCEEcCCCEECCCCEEcCCCEE
Confidence 677777664 6666666666666554
|
|
| >PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.3e-08 Score=98.89 Aligned_cols=63 Identities=14% Similarity=0.134 Sum_probs=42.4
Q ss_pred cceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHH--hhhhCCCcceEeCCCCE
Q 014953 321 DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVA--SLLAEGRVPVGIGENTK 387 (415)
Q Consensus 321 ~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~--~~~~~~~~~~~Ig~~~~ 387 (415)
++.||++|+|+ ++.|.+|+||++|.|. .+.+.+|++++++.|++++.+. +.++++ |+||++|.
T Consensus 273 ~~~ig~~~~I~~~~~i~~s~Ig~~~~I~-~~~v~~sii~~~~~ig~~~~i~~~~~ig~~---~~Ig~~~~ 338 (448)
T PRK14357 273 KTRIGEDCEIGPMTRIVDCEIGNNVKII-RSECEKSVIEDDVSVGPFSRLREGTVLKKS---VKIGNFVE 338 (448)
T ss_pred eeEECCCcEECCCceecccEECCCCEEe-eeEEEEEEEeCCcEECCCcEECCcccccCC---cEecCcee
Confidence 56777777777 5777777777777775 4577777777777777776553 455555 45554443
|
|
| >TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.2e-07 Score=85.66 Aligned_cols=83 Identities=8% Similarity=0.098 Sum_probs=44.8
Q ss_pred ceECCCCEEcceEE-eeeEEccCcEECCCcEEee-cEEeCCccccchhHHH----------hhhhCCCcceEeCCCCEEe
Q 014953 322 SIISHGSFITSSFI-EHSVVGIRSRINANVHLKD-TMMLGADFYETDAEVA----------SLLAEGRVPVGIGENTKIK 389 (415)
Q Consensus 322 ~~ig~~~~I~~~~i-~~svig~~~~ig~~~~i~~-sii~~~~~~~~~~~~~----------~~~~~~~~~~~Ig~~~~i~ 389 (415)
+.||+|++|..+.+ .++.||++|.|+.++.|.. +.|+++++|.+++.+. +.|+++ |.||.||.|.
T Consensus 113 a~Ig~~vvI~p~~Vniga~IGeGt~I~~~a~IG~~v~IG~nv~I~~g~~IgG~~ep~~~~~ViIgDn---v~IGa~a~I~ 189 (269)
T TIGR00965 113 AFIAKNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDN---CFIGARSEIV 189 (269)
T ss_pred cEECCCCEEeeeEEcCCcEECCCCEECCCcEECCCCEECCCCEEcCCcccCCCcccCCCCCeEECCC---CEECCCCEEc
Confidence 44555555542222 2345555555555555544 5555555555555442 455666 6666666665
Q ss_pred -eeEECCCeEEcCCcccCc
Q 014953 390 -YEQLKPICHIVETKYDSS 407 (415)
Q Consensus 390 -~~~i~~~~~i~~~~~~~~ 407 (415)
+++|++++.|++++.+.+
T Consensus 190 ~GV~IG~gavIGaGavI~~ 208 (269)
T TIGR00965 190 EGVIVEEGSVISMGVFIGQ 208 (269)
T ss_pred CCCEECCCCEEeCCCEECC
Confidence 666666666666665544
|
The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89). |
| >KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.5e-08 Score=86.58 Aligned_cols=69 Identities=17% Similarity=0.257 Sum_probs=40.3
Q ss_pred eeEEccCcEECCCcEEeecEEeCCccccchhHHH-hhhhCCCcceEeCCCCEEee--------------eEECCCeEEcC
Q 014953 337 HSVVGIRSRINANVHLKDTMMLGADFYETDAEVA-SLLAEGRVPVGIGENTKIKY--------------EQLKPICHIVE 401 (415)
Q Consensus 337 ~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~-~~~~~~~~~~~Ig~~~~i~~--------------~~i~~~~~i~~ 401 (415)
|..||++++||+|++|.+|||.+++.|++++.+. ++++-+ +.||..++++. +++|..+.+++
T Consensus 306 NVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~sIigw~---s~iGrWaRVe~~pv~~s~~~~~~a~Tilga~v~v~d 382 (407)
T KOG1460|consen 306 NVSIGANVRVGPGVRLRESIILDDAEIEENAVVLHSIIGWK---SSIGRWARVEGIPVEPSPNLPFAALTILGADVSVED 382 (407)
T ss_pred CceecCCceecCCceeeeeeeccCcEeeccceEEeeeeccc---ccccceeeecccccccCCCCCcceeEEecccceecc
Confidence 4455666666667777777776666666655443 344555 66666665542 55556666655
Q ss_pred CcccCcc
Q 014953 402 TKYDSST 408 (415)
Q Consensus 402 ~~~~~~~ 408 (415)
..-+..+
T Consensus 383 ev~v~~s 389 (407)
T KOG1460|consen 383 EVIVLNS 389 (407)
T ss_pred eeEEeee
Confidence 5544433
|
|
| >PLN02472 uncharacterized protein | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.3e-07 Score=85.54 Aligned_cols=76 Identities=12% Similarity=0.068 Sum_probs=48.8
Q ss_pred cceECCCCEEc-ceEEe----eeEEccCcEECCCcEEe-----------ecEEeCCccccchhHHHhhhhCCCcceEeCC
Q 014953 321 DSIISHGSFIT-SSFIE----HSVVGIRSRINANVHLK-----------DTMMLGADFYETDAEVASLLAEGRVPVGIGE 384 (415)
Q Consensus 321 ~~~ig~~~~I~-~~~i~----~svig~~~~ig~~~~i~-----------~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~ 384 (415)
++.||++|.|. +++|. ..+||++|.|+++|.|. +++|+++++|+.++.+. + |+||+
T Consensus 77 ~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L~-----~---~~Igd 148 (246)
T PLN02472 77 QVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLR-----S---CTIEP 148 (246)
T ss_pred CEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEEC-----C---eEEcC
Confidence 45566666665 44443 25788888888888884 57888886665555442 2 66666
Q ss_pred CCEEe-eeEECCCeEEcCCcc
Q 014953 385 NTKIK-YEQLKPICHIVETKY 404 (415)
Q Consensus 385 ~~~i~-~~~i~~~~~i~~~~~ 404 (415)
+|.|. +|+|++++.|++++.
T Consensus 149 ~v~IG~~svI~~gavIg~~~~ 169 (246)
T PLN02472 149 ECIIGQHSILMEGSLVETHSI 169 (246)
T ss_pred CCEECCCCEECCCCEECCCCE
Confidence 66666 666666666666653
|
|
| >PLN02694 serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.59 E-value=8.8e-08 Score=87.43 Aligned_cols=35 Identities=14% Similarity=0.003 Sum_probs=28.0
Q ss_pred eEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 380 VGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 380 ~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
|.||.||.|. ++.||++++|++++.+.+.+-+++.
T Consensus 219 V~IGagA~Ilggi~IGd~a~IGAgSVV~kdVP~~~~ 254 (294)
T PLN02694 219 VLIGAGATILGNVKIGEGAKIGAGSVVLIDVPPRTT 254 (294)
T ss_pred eEECCeeEECCCCEECCCCEECCCCEECCcCCCCcE
Confidence 8888888885 8888888888888888777766654
|
|
| >PRK09527 lacA galactoside O-acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.7e-07 Score=81.06 Aligned_cols=105 Identities=15% Similarity=0.096 Sum_probs=64.4
Q ss_pred ccCccCCCeeec-CCccccceECCCCEEc-ceEEe---eeEEccCcEECCCcEEeec-EEeCCccccchhHH--HhhhhC
Q 014953 304 TSRRNLPPSKID-DSKIVDSIISHGSFIT-SSFIE---HSVVGIRSRINANVHLKDT-MMLGADFYETDAEV--ASLLAE 375 (415)
Q Consensus 304 ~~~~i~~~~~i~-~~~i~~~~ig~~~~I~-~~~i~---~svig~~~~ig~~~~i~~s-ii~~~~~~~~~~~~--~~~~~~ 375 (415)
.++.|.+++++. + .++.||+++.|+ +++|. +..||++|.|++++.|... --........+... ...|++
T Consensus 60 ~~~~I~~~~~~~~g---~ni~IG~~v~In~~~~I~d~~~I~IGd~v~Ig~~v~I~~~~h~~~~~~r~~g~~~~~pi~IGd 136 (203)
T PRK09527 60 ENAWVEPPVYFSYG---SNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGN 136 (203)
T ss_pred CCcEEcCCEEEeeC---CCcEEcCCcEECCCcEEecCCCEEECCCCEECCCCEEEeCCCCCChhhccccccccCCeEECC
Confidence 345566666651 1 256677777776 55552 4789999999999888632 00000000000000 123444
Q ss_pred CCcceEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 376 GRVPVGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 376 ~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
+ |.||.+|.|. ++.||+++.|++++.+.+.+-.+|.
T Consensus 137 ~---v~IG~~~~I~~gv~IG~~~vIgagsvV~kdvp~~~v 173 (203)
T PRK09527 137 N---VWIGSHVVINPGVTIGDNSVIGAGSVVTKDIPPNVV 173 (203)
T ss_pred C---cEECCCCEEcCCCEECCCCEECCCCEEcccCCCCcE
Confidence 4 8888888887 8899999999999988877766654
|
|
| >TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.3e-07 Score=92.10 Aligned_cols=80 Identities=23% Similarity=0.368 Sum_probs=65.6
Q ss_pred ccCCCCCccccCccCCCeeecCCccccceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhh
Q 014953 295 FYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLL 373 (415)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~i~~~~i~~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~ 373 (415)
.+.++..+ +.+.|+++|.|. +.+.+|+|+++|+|+ +|.|++|+|+++|.|+++++|.+|+++++
T Consensus 280 ~i~~~~~i-~~~~Ig~~~~i~-~~v~~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~~~ii~~~------------- 344 (369)
T TIGR02092 280 YYAENSKV-ENSLVANGCIIE-GKVENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLENVIIDKD------------- 344 (369)
T ss_pred EEcCCCEE-EEeEEcCCCEEe-eEEeCCEECCCCEECCCCEEEeeEEeCCCEECCCCEEEEEEECCC-------------
Confidence 34445544 556777888874 457899999999999 79999999999999999999999999999
Q ss_pred hCCCcceEeCCCCEEeeeEECC
Q 014953 374 AEGRVPVGIGENTKIKYEQLKP 395 (415)
Q Consensus 374 ~~~~~~~~Ig~~~~i~~~~i~~ 395 (415)
++||+++++.+..+.+
T Consensus 345 ------~~v~~~~~~~~~~~~~ 360 (369)
T TIGR02092 345 ------VVIEPNVKIAGTSEQP 360 (369)
T ss_pred ------CEECCCCEeCCCCCcc
Confidence 8999999987654433
|
This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis. |
| >PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1e-07 Score=95.39 Aligned_cols=70 Identities=20% Similarity=0.267 Sum_probs=47.9
Q ss_pred CCccc-cceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHH--hhhhCCCcceEeCCCCEEe
Q 014953 316 DSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVA--SLLAEGRVPVGIGENTKIK 389 (415)
Q Consensus 316 ~~~i~-~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~--~~~~~~~~~~~Ig~~~~i~ 389 (415)
++.|. ++.||++|.|+ ++.|.+|+||++|+|+ ++.+.+|+|++++.|+.++.+. +.++++ |.||+++.+.
T Consensus 274 ~~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~-~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~---~~Ig~~~~i~ 347 (450)
T PRK14360 274 QTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVL-YSVVSDSQIGDGVKIGPYAHLRPEAQIGSN---CRIGNFVEIK 347 (450)
T ss_pred CCEEeCCcEECCCCEECCCcEEEEEEEcCCCEEe-eeEEeeccccCCcEECCCCEECCCCEEeCc---eEECCCEEEe
Confidence 34443 57788888887 6778888888888885 5677788888887777777664 455555 5555555443
|
|
| >PRK10092 maltose O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.5e-07 Score=79.26 Aligned_cols=91 Identities=11% Similarity=0.134 Sum_probs=55.1
Q ss_pred cceECCCCEEc-ceEEee---eEEccCcEECCCcEEeecEE-eCCccccchhHH--HhhhhCCCcceEeCCCCEEe-eeE
Q 014953 321 DSIISHGSFIT-SSFIEH---SVVGIRSRINANVHLKDTMM-LGADFYETDAEV--ASLLAEGRVPVGIGENTKIK-YEQ 392 (415)
Q Consensus 321 ~~~ig~~~~I~-~~~i~~---svig~~~~ig~~~~i~~sii-~~~~~~~~~~~~--~~~~~~~~~~~~Ig~~~~i~-~~~ 392 (415)
+..||+++.|+ ++++-+ -.||++|.|++++.|....- .+......+... ...|+++ |.||.+|.|. ++.
T Consensus 73 ~i~iG~~~~in~~~~i~d~~~I~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd~---v~IG~~a~I~~gv~ 149 (183)
T PRK10092 73 NIFLGNNFYANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVTIGNN---VWIGGRAVINPGVT 149 (183)
T ss_pred CcEEcCCcEECCceEEecCceEEECCCCEECCCCEEEcCCCCCChHHccccceecCCeEECCC---cEECCCCEECCCCE
Confidence 45555555555 344322 27888888888887752110 000000000000 1233444 8899999887 899
Q ss_pred ECCCeEEcCCcccCcccccccc
Q 014953 393 LKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 393 i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
||+++.|++++.+.+.+..+|.
T Consensus 150 IG~~~vIgagsvV~~di~~~~i 171 (183)
T PRK10092 150 IGDNVVVASGAVVTKDVPDNVV 171 (183)
T ss_pred ECCCCEECCCCEEccccCCCcE
Confidence 9999999999998888877764
|
|
| >TIGR01172 cysE serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.8e-07 Score=78.50 Aligned_cols=35 Identities=14% Similarity=0.043 Sum_probs=29.4
Q ss_pred eEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 380 VGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 380 ~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
|.||++|.|. +++||+++.|++++.+.+.+-.+|.
T Consensus 120 v~Ig~~a~I~~~v~IG~~~~Iga~s~V~~dvp~~~~ 155 (162)
T TIGR01172 120 VMIGAGAKVLGNIEVGENAKIGANSVVLKDVPPGAT 155 (162)
T ss_pred cEEcCCCEEECCcEECCCCEECCCCEECCCCCCCCE
Confidence 8899999887 7889999999999888887776654
|
Cysteine biosynthesis |
| >cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.7e-07 Score=71.10 Aligned_cols=65 Identities=17% Similarity=0.123 Sum_probs=50.7
Q ss_pred CccCCCeee-cCCccc-cceECCCCEEcceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeC
Q 014953 306 RRNLPPSKI-DDSKIV-DSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIG 383 (415)
Q Consensus 306 ~~i~~~~~i-~~~~i~-~~~ig~~~~I~~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig 383 (415)
+.+++.+.+ +++.|. +++||++|+|+ +.+++|+|+++++++.++.|.+++|+++ +.||
T Consensus 30 v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig-~~i~~svi~~~~~i~~~~~lg~siIg~~-------------------v~ig 89 (101)
T cd05635 30 VYIGPGSRVKMGARIYGNTTIGPTCKIG-GEVEDSIIEGYSNKQHDGFLGHSYLGSW-------------------CNLG 89 (101)
T ss_pred CEECCCCEECCCCEEeCcCEECCCCEEC-CEECccEEcCCCEecCcCEEeeeEECCC-------------------CEEC
Confidence 344444444 455554 58888888886 4678999999999999999999999999 8899
Q ss_pred CCCEEee
Q 014953 384 ENTKIKY 390 (415)
Q Consensus 384 ~~~~i~~ 390 (415)
+++...|
T Consensus 90 ~~~~~~~ 96 (101)
T cd05635 90 AGTNNSD 96 (101)
T ss_pred CCceecc
Confidence 9887654
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.1e-07 Score=71.74 Aligned_cols=71 Identities=13% Similarity=0.081 Sum_probs=49.6
Q ss_pred cceECCCCEEcceEEeeeEEccCcEECCCcE---EeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEe-eeEECCC
Q 014953 321 DSIISHGSFITSSFIEHSVVGIRSRINANVH---LKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-YEQLKPI 396 (415)
Q Consensus 321 ~~~ig~~~~I~~~~i~~svig~~~~ig~~~~---i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~~i~~~ 396 (415)
.++||+++.|++ ++.|+++++|+.++. +.+++|+++ |.|+.++.+. ++.|+++
T Consensus 22 ~~~ig~~~~Ig~----~~~i~~~~~i~~~~~~~~~~~~~Ig~~-------------------~~Ig~~~~i~~~~~Ig~~ 78 (101)
T cd03354 22 GIVIGETAVIGD----NCTIYQGVTLGGKGKGGGKRHPTIGDN-------------------VVIGAGAKILGNITIGDN 78 (101)
T ss_pred eEEECCCCEECC----CCEEcCCCEECCCccCCcCCCCEECCC-------------------cEEcCCCEEECcCEECCC
Confidence 345666666663 355666666666664 566667777 7888888887 6888888
Q ss_pred eEEcCCcccCcccccccc
Q 014953 397 CHIVETKYDSSTISRFSL 414 (415)
Q Consensus 397 ~~i~~~~~~~~~~~~~~~ 414 (415)
+.|++++.+.+.+-.+++
T Consensus 79 ~~i~~~~~i~~~~~~~~~ 96 (101)
T cd03354 79 VKIGANAVVTKDVPANST 96 (101)
T ss_pred CEECCCCEECcccCCCCE
Confidence 888888887776655543
|
This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain. |
| >TIGR02091 glgC glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.7e-07 Score=89.58 Aligned_cols=76 Identities=20% Similarity=0.199 Sum_probs=63.1
Q ss_pred ccCCCCCccccCccCCCeeecCCccccceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhh
Q 014953 295 FYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLL 373 (415)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~i~~~~i~~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~ 373 (415)
++++.+. ...+.|+++|.|.++.+.+++||++|+|+ ++.|.+|+|+++|.||++++|.+|+++++
T Consensus 285 ~i~~~~~-i~~~~ig~~~~I~~~~v~~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~~~ivg~~------------- 350 (361)
T TIGR02091 285 FVDSDAQ-VVDSLVSEGCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRNAIIDKN------------- 350 (361)
T ss_pred EecCCCE-EECCEECCCCEECCCEEEccEECCCCEECCCCEEeeeEEeCCCEECCCCEEeeeEECCC-------------
Confidence 3444442 34567888888855577899999999999 79999999999999999999999999999
Q ss_pred hCCCcceEeCCCCEEee
Q 014953 374 AEGRVPVGIGENTKIKY 390 (415)
Q Consensus 374 ~~~~~~~~Ig~~~~i~~ 390 (415)
+.||.++.|.|
T Consensus 351 ------~~i~~~~~i~~ 361 (361)
T TIGR02091 351 ------VRIGEGVVIGN 361 (361)
T ss_pred ------CEECCCCEeCC
Confidence 88999888753
|
This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals. |
| >PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.6e-07 Score=83.52 Aligned_cols=56 Identities=20% Similarity=0.186 Sum_probs=23.9
Q ss_pred CCCCccccCccCCCeee-cCCccc-cceECCCCEEc-ceEEe-eeEEccCcEECCCcEEe
Q 014953 298 ATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLK 353 (415)
Q Consensus 298 ~~~~~~~~~~i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i~-~svig~~~~ig~~~~i~ 353 (415)
|.+.+.+++.++.++.| +.+.+. ++.||++|.|+ ++.|. ++.||++|.|++++.|.
T Consensus 4 p~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig 63 (255)
T PRK12461 4 PTAVIDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVG 63 (255)
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeC
Confidence 33333333444444443 333332 34444444444 34442 44555555555444443
|
|
| >cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain | Back alignment and domain information |
|---|
Probab=98.49 E-value=5e-07 Score=79.33 Aligned_cols=25 Identities=24% Similarity=0.100 Sum_probs=16.7
Q ss_pred eEeCCCCEEe-eeEECCCeEEcCCcc
Q 014953 380 VGIGENTKIK-YEQLKPICHIVETKY 404 (415)
Q Consensus 380 ~~Ig~~~~i~-~~~i~~~~~i~~~~~ 404 (415)
+.||++|.|. +|.+.++++|++++.
T Consensus 151 ~~ig~~~~ig~~~~v~~~~~ig~~~~ 176 (197)
T cd03360 151 VTIGEGAFIGAGATIIQGVTIGAGAI 176 (197)
T ss_pred cEECCCCEECCCCEEcCCCEECCCCE
Confidence 6677777765 666666666666654
|
The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. |
| >PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=7.1e-07 Score=78.28 Aligned_cols=91 Identities=18% Similarity=0.207 Sum_probs=58.8
Q ss_pred cceECCCCEEc-ceEEe---eeEEccCcEECCCcEEeecEE--------eCCccccch---hHH-HhhhhCCCcceEeCC
Q 014953 321 DSIISHGSFIT-SSFIE---HSVVGIRSRINANVHLKDTMM--------LGADFYETD---AEV-ASLLAEGRVPVGIGE 384 (415)
Q Consensus 321 ~~~ig~~~~I~-~~~i~---~svig~~~~ig~~~~i~~sii--------~~~~~~~~~---~~~-~~~~~~~~~~~~Ig~ 384 (415)
...||++|.|+ ++.|. .+.||++|.|++++.|.+... +.+..+... ... ...++++ |.||.
T Consensus 65 ~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~---~~ig~ 141 (192)
T PRK09677 65 KLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPPDMRTLESSAVVIGQR---VWIGE 141 (192)
T ss_pred eEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccChhhcccccCCeEEcCC---cEECC
Confidence 45567777776 45553 678899999998888875311 111111000 000 1234555 78888
Q ss_pred CCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 385 NTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 385 ~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
++.|. +++||+++.|++++.+.+.+-++++
T Consensus 142 ~~~i~~g~~Ig~~~~Iga~s~v~~~i~~~~~ 172 (192)
T PRK09677 142 NVTILPGVSIGNGCIVGANSVVTKSIPENTV 172 (192)
T ss_pred CCEEcCCCEECCCCEECCCCEECcccCCCcE
Confidence 88887 8999999999999988888777664
|
|
| >cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA | Back alignment and domain information |
|---|
Probab=98.48 E-value=6.6e-07 Score=74.29 Aligned_cols=24 Identities=17% Similarity=0.018 Sum_probs=9.7
Q ss_pred eEeCCCCEEe-eeEECCCeEEcCCc
Q 014953 380 VGIGENTKIK-YEQLKPICHIVETK 403 (415)
Q Consensus 380 ~~Ig~~~~i~-~~~i~~~~~i~~~~ 403 (415)
+.||+++.|. ++.|++++.|++++
T Consensus 82 ~~Ig~~a~I~~gv~Ig~~~~Ig~g~ 106 (139)
T cd03350 82 VFIGANCEVVEGVIVGKGAVLAAGV 106 (139)
T ss_pred CEECCCCEECCCCEECCCCEEcCCC
Confidence 3344444442 34444444444433
|
It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs. |
| >PLN02357 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=98.47 E-value=4e-07 Score=85.54 Aligned_cols=34 Identities=18% Similarity=0.002 Sum_probs=22.1
Q ss_pred eEeCCCCEEe-eeEECCCeEEcCCcccCccccccc
Q 014953 380 VGIGENTKIK-YEQLKPICHIVETKYDSSTISRFS 413 (415)
Q Consensus 380 ~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~ 413 (415)
|.||.|+.|. ++.||++++|++++.+.+.+-+++
T Consensus 285 V~IGagA~IlggV~IGdga~IGAgSVV~~dVP~~~ 319 (360)
T PLN02357 285 VLIGAGTCILGNITIGEGAKIGAGSVVLKDVPPRT 319 (360)
T ss_pred eEECCceEEECCeEECCCCEECCCCEECcccCCCc
Confidence 6666666664 666777777777766666555544
|
|
| >COG1043 LpxA Acyl-[acyl carrier protein] | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.7e-07 Score=78.98 Aligned_cols=109 Identities=18% Similarity=0.175 Sum_probs=56.6
Q ss_pred ccCCCCCccccCccCCCeee-cCCccc-cceECCCCEEc-ceEEe-eeEEccCcEECCCcEEee-------------cEE
Q 014953 295 FYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKD-------------TMM 357 (415)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i~-~svig~~~~ig~~~~i~~-------------sii 357 (415)
.++|++.+.+++.+++++.| +-|.|+ ++.||+|++|+ +++|+ .+.||++++|-+.+.|++ -+|
T Consensus 5 ~IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~I 84 (260)
T COG1043 5 KIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLII 84 (260)
T ss_pred ccCcceeeCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEEE
Confidence 45566666666666666655 444443 56666666666 45554 566776666666666543 245
Q ss_pred eCCccccchhHHHhhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCc
Q 014953 358 LGADFYETDAEVASLLAEGRVPVGIGENTKIK-YEQLKPICHIVETK 403 (415)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~ 403 (415)
++++.|.+.+.+-.--.+|+.-+.||+|+-+- ++.|.++|+||...
T Consensus 85 G~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ 131 (260)
T COG1043 85 GDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNC 131 (260)
T ss_pred CCCCeEeeEEEEeccccCCceeEEECCCCEEEEeeeeeccceecCcE
Confidence 55555544443322111221114566665554 44444444444443
|
|
| >cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.9e-07 Score=70.57 Aligned_cols=86 Identities=10% Similarity=0.137 Sum_probs=50.8
Q ss_pred eECCCCEEc-ceEEe---eeEEccCcEECCCcEEeecEEeCCccccc-hh--HHHhhhhCCCcceEeCCCCEEe-eeEEC
Q 014953 323 IISHGSFIT-SSFIE---HSVVGIRSRINANVHLKDTMMLGADFYET-DA--EVASLLAEGRVPVGIGENTKIK-YEQLK 394 (415)
Q Consensus 323 ~ig~~~~I~-~~~i~---~svig~~~~ig~~~~i~~sii~~~~~~~~-~~--~~~~~~~~~~~~~~Ig~~~~i~-~~~i~ 394 (415)
.||++|.|+ ++.|. ...||++|.|++++.|... .+..... .. .-...++++ |.||.++.|. ++.|+
T Consensus 5 ~iG~~~~I~~~~~i~~~~~i~IG~~~~I~~~~~I~~~---~h~~~~~~~~~~~~~v~Ig~~---~~ig~~~~i~~g~~Ig 78 (107)
T cd05825 5 TIGDNSWIGEGVWIYNLAPVTIGSDACISQGAYLCTG---SHDYRSPAFPLITAPIVIGDG---AWVAAEAFVGPGVTIG 78 (107)
T ss_pred EECCCCEECCCCEEeeCCceEECCCCEECCCeEeecC---CCCCCcCccceecCCEEECCC---CEECCCCEECCCCEEC
Confidence 345555554 34442 4677777777777776431 0000000 00 001233444 7888888887 88888
Q ss_pred CCeEEcCCcccCcccccccc
Q 014953 395 PICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 395 ~~~~i~~~~~~~~~~~~~~~ 414 (415)
+++.|++++.+.+.+.++++
T Consensus 79 ~~~~i~~gs~v~~~~~~~~~ 98 (107)
T cd05825 79 EGAVVGARSVVVRDLPAWTV 98 (107)
T ss_pred CCCEECCCCEEeCcCCCCCE
Confidence 88888888888887777764
|
coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms. |
| >TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.1e-07 Score=87.32 Aligned_cols=86 Identities=21% Similarity=0.195 Sum_probs=62.2
Q ss_pred ccCCCCCccccCccCCCeee-cCCccc------cceECCCCEEcceEEeeeEEccCcEECCC-cEEeecEEeCCccccch
Q 014953 295 FYDATKPIYTSRRNLPPSKI-DDSKIV------DSIISHGSFITSSFIEHSVVGIRSRINAN-VHLKDTMMLGADFYETD 366 (415)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~i-~~~~i~------~~~ig~~~~I~~~~i~~svig~~~~ig~~-~~i~~sii~~~~~~~~~ 366 (415)
++.+++.+ .++.+.+++.| ++|.|. +|+||++|+|+++.|.+|+|+++|+|+.+ +++.++++.++
T Consensus 256 ~i~~~~~i-~~~~i~~~~~Ig~~~~I~~~~i~~~~~Ig~~~~i~~~~i~~s~i~~~~~i~~~~~~~~~~ii~~~------ 328 (353)
T TIGR01208 256 VVGEGAKI-VNSVIRGPAVIGEDCIIENSYIGPYTSIGEGVVIRDAEVEHSIVLDESVIEGVQARIVDSVIGKK------ 328 (353)
T ss_pred EECCCCEE-eCCEEECCcEECCCCEEcCcEECCCCEECCCCEEeeeEEEeeEEcCCCEEcCCcceeecCEEcCC------
Confidence 44555555 45555566666 555554 45556666665566679999999999988 58999999999
Q ss_pred hHHHhhhhCCCcceEeCCCCEEe---eeEECCCeEEc
Q 014953 367 AEVASLLAEGRVPVGIGENTKIK---YEQLKPICHIV 400 (415)
Q Consensus 367 ~~~~~~~~~~~~~~~Ig~~~~i~---~~~i~~~~~i~ 400 (415)
+.|++++.+. +.++|.+++|+
T Consensus 329 -------------~~i~~~~~~~~~~~~~~g~~~~~~ 352 (353)
T TIGR01208 329 -------------VRIKGNRRRPGDLRLTIGDYSQVE 352 (353)
T ss_pred -------------CEECCCcccccccceEEcCCceec
Confidence 8899998886 47788888775
|
Alternate name: dTDP-D-glucose synthase |
| >cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc | Back alignment and domain information |
|---|
Probab=98.44 E-value=6e-07 Score=79.85 Aligned_cols=75 Identities=12% Similarity=0.026 Sum_probs=50.9
Q ss_pred ccCCCCCccccCccCCCeee-cCCcc-ccceECCCCEEc-ceEEe-eeEEccCcEECCCcEEe-----------------
Q 014953 295 FYDATKPIYTSRRNLPPSKI-DDSKI-VDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLK----------------- 353 (415)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~i-~~~~i-~~~~ig~~~~I~-~~~i~-~svig~~~~ig~~~~i~----------------- 353 (415)
.+++.+.+.+++.+++++++ +++.| .++.||++|.|+ ++.|. +++|+++|.|++++.|.
T Consensus 9 ~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~ 88 (205)
T cd03352 9 SIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDGGGWVKIP 88 (205)
T ss_pred EECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEEcCCCceeEecCCcEEEcC
Confidence 34555555566666666666 55666 477788888887 57775 48888888888888774
Q ss_pred ---ecEEeCCccccchhHH
Q 014953 354 ---DTMMLGADFYETDAEV 369 (415)
Q Consensus 354 ---~sii~~~~~~~~~~~~ 369 (415)
++.+++++.+++++.+
T Consensus 89 ~~~~v~Ig~~~~Ig~~~~i 107 (205)
T cd03352 89 QLGGVIIGDDVEIGANTTI 107 (205)
T ss_pred CcceEEECCCEEECCCCEE
Confidence 4666777666666544
|
This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=7.4e-07 Score=88.65 Aligned_cols=91 Identities=13% Similarity=0.077 Sum_probs=66.9
Q ss_pred cCCccc-cceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHH-hhhhCCCc-------ceEeCC
Q 014953 315 DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVA-SLLAEGRV-------PVGIGE 384 (415)
Q Consensus 315 ~~~~i~-~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~-~~~~~~~~-------~~~Ig~ 384 (415)
+++.|. ++.||++|.|+ ++.|.+|+||++|.|++ +.+.+|+++++++|.+++.+. +.++++.. .++||.
T Consensus 258 ~~~~i~g~~~ig~~~~I~~~~~i~~~~i~~~~~I~~-~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~~~~~~i~~ 336 (430)
T PRK14359 258 SGVEFEGECELEEGVRILGKSKIENSHIKAHSVIEE-SIIENSDVGPLAHIRPKSEIKNTHIGNFVETKNAKLNGVKAGH 336 (430)
T ss_pred CCcEEcCceEECCCCEECCCeEEEeeEECCCCEEec-cEEeCCEECCCCEECCCcEEeccEEcCcEEEcccEeccccccc
Confidence 445453 68889999998 68888999999999976 777888888887777666443 23333310 157778
Q ss_pred CCEEeeeEECCCeEEcCCcccC
Q 014953 385 NTKIKYEQLKPICHIVETKYDS 406 (415)
Q Consensus 385 ~~~i~~~~i~~~~~i~~~~~~~ 406 (415)
++.|.+|+||+++.|++++...
T Consensus 337 ~~~i~d~~Ig~~~~ig~~~~~~ 358 (430)
T PRK14359 337 LSYLGDCEIDEGTNIGAGTITC 358 (430)
T ss_pred cccccCCEECCCCEECCCceEc
Confidence 8888889999999999987543
|
|
| >cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.4e-06 Score=74.92 Aligned_cols=86 Identities=14% Similarity=0.040 Sum_probs=54.6
Q ss_pred cceECCCCEEc-ceEEe---eeEEccCcEECCCcEEeecEEeCCccccch------h--HHHhhhhCCCcceEeCCCCEE
Q 014953 321 DSIISHGSFIT-SSFIE---HSVVGIRSRINANVHLKDTMMLGADFYETD------A--EVASLLAEGRVPVGIGENTKI 388 (415)
Q Consensus 321 ~~~ig~~~~I~-~~~i~---~svig~~~~ig~~~~i~~sii~~~~~~~~~------~--~~~~~~~~~~~~~~Ig~~~~i 388 (415)
+..||++|.|+ ++.+. +..||++|.|++++.|..+- +.... . .-...|+++ |.||.+|.|
T Consensus 62 ~i~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I~~~~-----h~~~~~~~~~~~~~~~~v~IG~~---~~Ig~~a~I 133 (169)
T cd03357 62 NIHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYTAG-----HPLDPEERNRGLEYAKPITIGDN---VWIGGGVII 133 (169)
T ss_pred cCEECCCceEcCCEEEeccCcEEECCCCEECCCCEEEeCC-----CCCChhHccccceecCCcEeCCC---EEECCCCEE
Confidence 34566666665 44442 46788888888888875320 00000 0 001233333 888888888
Q ss_pred e-eeEECCCeEEcCCcccCcccccccc
Q 014953 389 K-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 389 ~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
. ++.||+++.|++++.+.+.+-.++.
T Consensus 134 ~~gv~Ig~~~~VgagavV~~~vp~~~v 160 (169)
T cd03357 134 LPGVTIGDNSVIGAGSVVTKDIPANVV 160 (169)
T ss_pred eCCCEECCCCEECCCCEEccccCCCcE
Confidence 6 8999999999999988887776664
|
MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.1e-06 Score=80.22 Aligned_cols=91 Identities=16% Similarity=0.222 Sum_probs=52.8
Q ss_pred cccCccCCCeee-cCCcc-ccceECCCCE-EcceEE-----eeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhh
Q 014953 303 YTSRRNLPPSKI-DDSKI-VDSIISHGSF-ITSSFI-----EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLA 374 (415)
Q Consensus 303 ~~~~~i~~~~~i-~~~~i-~~~~ig~~~~-I~~~~i-----~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~ 374 (415)
...+.+.+++++ +++.| ..++|+.++. ++++.| ..++||.+|.||.++.| .+++.++. ..-..++
T Consensus 182 ~~sa~Vr~gA~LGeGT~IM~~a~Vn~nAgtiG~~~IEgrInsGavIGhds~IG~gasI-g~tLsGg~------~~~V~IG 254 (341)
T TIGR03536 182 ADTARVRLGAYVGEGTTVMHEGFINFNAGTEGPSMVEGRISAGVMVGKGSDLGGGCST-MGTLSGGG------NIVISVG 254 (341)
T ss_pred cCCCeEcCCcEECCCCEEecCCEECcCcEecCCceEecccccCCEECCCCEECCCCEE-eEEEeCCC------ceeEEEC
Confidence 333444444444 34333 2455555555 443222 36888888888888888 44554441 0113445
Q ss_pred CCCcceEeCCCCEEeeeEECCCeEEcCCcc
Q 014953 375 EGRVPVGIGENTKIKYEQLKPICHIVETKY 404 (415)
Q Consensus 375 ~~~~~~~Ig~~~~i~~~~i~~~~~i~~~~~ 404 (415)
++ |.||.||.| +..||++++|++|+.
T Consensus 255 e~---~lIGagA~I-GI~IGd~~iIGAGav 280 (341)
T TIGR03536 255 EG---CLLGANAGI-GIPLGDRCTVEAGLY 280 (341)
T ss_pred CC---cEECCCCEE-eeEECCCCEECCCCE
Confidence 55 778888877 767777777777664
|
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway. |
| >cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.1e-05 Score=75.01 Aligned_cols=214 Identities=13% Similarity=0.162 Sum_probs=124.8
Q ss_pred cceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhc----cCCc-EEEEEcccC-hhHHHHHHHhhccCC
Q 014953 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCIN----SGIN-KVYILTQYN-SASLNRHLARAYNYG 80 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~----~gi~-~I~vv~~~~-~~~i~~~l~~~~~~~ 80 (415)
.++-+|+||||.||||+ .+.||.|+||....+++++.++++.. .|.. ..+|-+++. +++..+++.+.. ..
T Consensus 2 ~kvavl~LaGG~GTRLG---~~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~~~-~~ 77 (300)
T cd00897 2 NKLVVLKLNGGLGTSMG---CTGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKKYA-GV 77 (300)
T ss_pred CcEEEEEecCCcccccC---CCCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHHcC-CC
Confidence 46789999999999997 78999999996544899999988864 3432 456666655 467888887642 11
Q ss_pred CC--cccCCceEEEecCc-----cCCCCCC--CccccchHHHHHHhh--hhhcCCCCCCcCeEEEEcCCeecccChHHHH
Q 014953 81 SG--VTFGDGCVEVLAAT-----QTPGEAG--KRWFQGTADAVRQFH--WLFEDPRNKVIEDVLILSGDHLYRMDYMDFV 149 (415)
Q Consensus 81 ~~--~~~~~~~v~i~~~~-----~~~~~~~--~~~~~Gt~~al~~~~--~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l 149 (415)
.. ..|....+.-+... ....+.+ .-.+.|.|+...... ..+++....+.+.+.+.+.|.+...-=-.++
T Consensus 78 ~~~v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~~Dp~~l 157 (300)
T cd00897 78 NVDIHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGATVDLRIL 157 (300)
T ss_pred ccCeEEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccccccCCHHHH
Confidence 10 00110000000000 0000000 112345555443221 1122222233689999999997653334688
Q ss_pred HHHHHcCCcEEEEEEEcCCCcCCcccEEEECCCC--CeEEEEEcCCcccccccccccccccccccccccccceeeeeEEE
Q 014953 150 QNHRQSGADITISCLPMDDSRASDFGLMKINNEG--RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYL 227 (415)
Q Consensus 150 ~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~--~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi 227 (415)
.+|..+++++++=+.+...+ .+.-|.+... +| +|+++.+-|...... . +........+++.++
T Consensus 158 g~~~~~~~~~~~evv~Kt~~-dek~G~l~~~-~g~~~vvEyse~p~e~~~~-~------------~~~~~~~~~nt~n~~ 222 (300)
T cd00897 158 NHMVDNKAEYIMEVTDKTRA-DVKGGTLIQY-EGKLRLLEIAQVPKEHVDE-F------------KSIKKFKIFNTNNLW 222 (300)
T ss_pred HHHHhcCCceEEEEeecCCC-CCcccEEEEE-CCEEEEEEeccCCHHHHHh-h------------cCcccceEEEEeEEE
Confidence 88999999998866665442 2345655542 44 466777766542210 0 011124678899999
Q ss_pred EeHHHHHHHHhh
Q 014953 228 FKKEILLNLLRW 239 (415)
Q Consensus 228 ~~~~~l~~~l~~ 239 (415)
++-++|+++++.
T Consensus 223 ~~l~~L~~~~~~ 234 (300)
T cd00897 223 VNLKAVKRVVEE 234 (300)
T ss_pred EEHHHHHHHHHh
Confidence 999999877654
|
UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases. |
| >cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins | Back alignment and domain information |
|---|
Probab=98.42 E-value=8e-07 Score=70.35 Aligned_cols=34 Identities=18% Similarity=0.014 Sum_probs=23.6
Q ss_pred eEeCCCCEEe-eeEECCCeEEcCCcccCccccccc
Q 014953 380 VGIGENTKIK-YEQLKPICHIVETKYDSSTISRFS 413 (415)
Q Consensus 380 ~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~ 413 (415)
|.||+++.+. ++.|++++.|++++.+.+.+..++
T Consensus 65 ~~ig~~~~i~~~~~ig~~~~i~~~~~v~~~i~~~~ 99 (109)
T cd04647 65 VWIGANVVILPGVTIGDGAVVGAGSVVTKDVPPNS 99 (109)
T ss_pred CEECCCCEEcCCCEECCCCEECCCCEEeeECCCCC
Confidence 6677777774 777777777777777666555444
|
MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form. |
| >TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.1e-06 Score=77.58 Aligned_cols=30 Identities=27% Similarity=0.360 Sum_probs=11.6
Q ss_pred ccccCccCCCeee-cCCccc-cceECCCCEEc
Q 014953 302 IYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT 331 (415)
Q Consensus 302 ~~~~~~i~~~~~i-~~~~i~-~~~ig~~~~I~ 331 (415)
+.+.+.+.+++.+ +++.|. ++.|+.+|+|+
T Consensus 108 i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig 139 (201)
T TIGR03570 108 IMAGAVINPDVRIGDNVIINTGAIVEHDCVIG 139 (201)
T ss_pred ECCCCEECCCCEECCCcEECCCCEEcCCCEEC
Confidence 3333444444444 333332 33343334443
|
These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. |
| >PRK10191 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.1e-06 Score=72.87 Aligned_cols=35 Identities=14% Similarity=0.076 Sum_probs=27.0
Q ss_pred eEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 380 VGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 380 ~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
|.||.++.+. ++.||+++.|++++.+.+.+..+++
T Consensus 99 ~~Ig~~~~I~~~v~IG~~~~Igags~V~~dv~~~~~ 134 (146)
T PRK10191 99 VELGANVIILGDITIGNNVTVGAGSVVLDSVPDNAL 134 (146)
T ss_pred cEEcCCCEEeCCCEECCCCEECCCCEECCccCCCcE
Confidence 7788888887 7888888888888877777766654
|
|
| >PLN02739 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=98.39 E-value=7.5e-07 Score=83.03 Aligned_cols=35 Identities=9% Similarity=0.037 Sum_probs=26.5
Q ss_pred eEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 380 VGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 380 ~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
|.||.|+.|- ++.||+++.|++++.+.+.+..++.
T Consensus 264 V~IGagA~IlG~V~IGd~aiIGAGSVV~kDVP~~st 299 (355)
T PLN02739 264 ALLGACVTILGNISIGAGAMVAAGSLVLKDVPSHSM 299 (355)
T ss_pred CEEcCCCEEeCCeEECCCCEECCCCEECCCCCCCcE
Confidence 7788888876 7888888888888877776666553
|
|
| >cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.1e-06 Score=70.74 Aligned_cols=30 Identities=23% Similarity=0.184 Sum_probs=14.0
Q ss_pred ccccCccCCCeee-cCCcc-ccceECCCCEEc
Q 014953 302 IYTSRRNLPPSKI-DDSKI-VDSIISHGSFIT 331 (415)
Q Consensus 302 ~~~~~~i~~~~~i-~~~~i-~~~~ig~~~~I~ 331 (415)
+...+.+++++.+ .++.+ .++.||++|.|+
T Consensus 13 i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~ 44 (119)
T cd03358 13 IENDVKIGDNVKIQSNVSIYEGVTIEDDVFIG 44 (119)
T ss_pred ECCCcEECCCcEECCCcEEeCCeEECCCcEEc
Confidence 3333444444444 33444 245555555555
|
WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity. |
| >TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.8e-06 Score=78.53 Aligned_cols=69 Identities=20% Similarity=0.255 Sum_probs=36.9
Q ss_pred ECCCCEEcceEEe-eeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEeeeEECCCeEEcCC
Q 014953 324 ISHGSFITSSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKYEQLKPICHIVET 402 (415)
Q Consensus 324 ig~~~~I~~~~i~-~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~~i~~~~~i~~~ 402 (415)
||.. +| ++.|. +|+||++|.|++++.|.+.. .++ ......|+++ |.||.||.| +..||++++|++|
T Consensus 187 IG~~-iI-~g~I~HdvvIGd~~~IgpGvsI~G~L-sGg------~~~pV~IGe~---~~IGagA~I-GI~IGd~~VVGAG 253 (319)
T TIGR03535 187 LGAS-MV-EGRISAGVVVGDGSDIGGGASIMGTL-SGG------GKEVISIGER---CLLGANSGL-GISLGDDCVVEAG 253 (319)
T ss_pred ecCc-eE-EEEEccCCEECCCCEECCCceeccee-cCC------CcccEEECCC---cEECCCCEE-CeEECCCCEECCC
Confidence 4443 34 34443 46677777777766644421 111 0111122333 777777777 6677777777777
Q ss_pred ccc
Q 014953 403 KYD 405 (415)
Q Consensus 403 ~~~ 405 (415)
+.+
T Consensus 254 aVV 256 (319)
T TIGR03535 254 LYV 256 (319)
T ss_pred CEE
Confidence 653
|
Alternate name: tetrahydrodipicolinate N-succinyltransferase. |
| >TIGR01172 cysE serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.4e-06 Score=74.13 Aligned_cols=14 Identities=21% Similarity=-0.100 Sum_probs=6.7
Q ss_pred CccccCccCCCeee
Q 014953 301 PIYTSRRNLPPSKI 314 (415)
Q Consensus 301 ~~~~~~~i~~~~~i 314 (415)
.+.+.+.+++++++
T Consensus 63 ~I~~~~~Ig~~~~i 76 (162)
T TIGR01172 63 DIHPGARIGRGVFI 76 (162)
T ss_pred EeCCCCEECCCeEE
Confidence 34444445555555
|
Cysteine biosynthesis |
| >COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.32 E-value=7.6e-07 Score=79.25 Aligned_cols=98 Identities=11% Similarity=0.162 Sum_probs=55.9
Q ss_pred CCCCCccccCccCCCeee-cCCccc-cceECCCCEEc-ceEE-eeeEEccCcEECCCcEEeecEEeCCccccchhHHHhh
Q 014953 297 DATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASL 372 (415)
Q Consensus 297 ~~~~~~~~~~~i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i-~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~ 372 (415)
.|.+.+..++.+.+++.+ +++.|- ++.++++|.|. .+++ ...+||+||+||-|+.|.+ ++ ++....-.+
T Consensus 112 ~p~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~G-VL------ep~~a~Pv~ 184 (271)
T COG2171 112 VPGAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGG-VL------EPLQANPVI 184 (271)
T ss_pred cCccEEeeccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeE-Ee------cCCCCCCeE
Confidence 344555556666666666 334443 78888888888 4544 3567777777777777666 22 222333344
Q ss_pred hhCCCcceEeCCCCE-EeeeEECCCeEEcCCcc
Q 014953 373 LAEGRVPVGIGENTK-IKYEQLKPICHIVETKY 404 (415)
Q Consensus 373 ~~~~~~~~~Ig~~~~-i~~~~i~~~~~i~~~~~ 404 (415)
|+++ |.||.|+. +.++++|++|.|..|..
T Consensus 185 Igdn---cliGAns~~veGV~vGdg~VV~aGv~ 214 (271)
T COG2171 185 IGDN---CLIGANSEVVEGVIVGDGCVVAAGVF 214 (271)
T ss_pred ECCc---cEeccccceEeeeEeCCCcEEecceE
Confidence 4555 66666652 23555555555555443
|
|
| >COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.6e-06 Score=72.96 Aligned_cols=60 Identities=15% Similarity=0.160 Sum_probs=42.3
Q ss_pred cceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEe-eeEECCCeE
Q 014953 321 DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-YEQLKPICH 398 (415)
Q Consensus 321 ~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~ 398 (415)
.+.||++|+|| ++.|..|.|+++|.||= +|+++++ ++||++|.|. ++++-++..
T Consensus 72 p~~IG~~vtIGH~aivHGc~Ig~~~lIGm-----gA~vldg-------------------a~IG~~~iVgAgalV~~~k~ 127 (176)
T COG0663 72 PVTIGDDVTIGHGAVVHGCTIGDNVLIGM-----GATVLDG-------------------AVIGDGSIVGAGALVTPGKE 127 (176)
T ss_pred CeEECCCcEEcCccEEEEeEECCCcEEec-----CceEeCC-------------------cEECCCcEEccCCcccCCcC
Confidence 68899999999 58888899999999994 4555666 5566665555 555555555
Q ss_pred EcCCcc
Q 014953 399 IVETKY 404 (415)
Q Consensus 399 i~~~~~ 404 (415)
++++.-
T Consensus 128 ~p~~~L 133 (176)
T COG0663 128 IPGGSL 133 (176)
T ss_pred CCCCeE
Confidence 555543
|
|
| >cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.3e-06 Score=71.90 Aligned_cols=31 Identities=19% Similarity=0.255 Sum_probs=16.6
Q ss_pred ceECCCCEEc-ceEEeeeEEccCcEECCCcEE
Q 014953 322 SIISHGSFIT-SSFIEHSVVGIRSRINANVHL 352 (415)
Q Consensus 322 ~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i 352 (415)
+.||++|.|+ ++.+.++.|+++|.||+++.|
T Consensus 73 v~Ig~~~~Ig~~~~i~~~~Ig~~v~Ig~~~~I 104 (161)
T cd03359 73 LHIGDYVFIGENCVVNAAQIGSYVHIGKNCVI 104 (161)
T ss_pred eEECCccEECCCCEEEeeEEcCCcEECCCCEE
Confidence 3455555555 455555555555555555444
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.6e-06 Score=77.18 Aligned_cols=95 Identities=15% Similarity=0.203 Sum_probs=75.7
Q ss_pred eee-cCCccc-cceECCCCEEc-ceEEe-eeEEccCcEECCCcEEee-cEEeCCccccchhHHHhhhhCCCc-ceEeCCC
Q 014953 312 SKI-DDSKIV-DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKD-TMMLGADFYETDAEVASLLAEGRV-PVGIGEN 385 (415)
Q Consensus 312 ~~i-~~~~i~-~~~ig~~~~I~-~~~i~-~svig~~~~ig~~~~i~~-sii~~~~~~~~~~~~~~~~~~~~~-~~~Ig~~ 385 (415)
++| ++++++ .++||+|++|- ++.|. ++.++.++.|.-++.++. ++|++|+||.-|+.++-.++-... |+.||+|
T Consensus 109 ~RI~p~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~GVLep~~a~Pv~Igdn 188 (271)
T COG2171 109 VRIVPGAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVLEPLQANPVIIGDN 188 (271)
T ss_pred eeecCccEEeeccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeEEecCCCCCCeEECCc
Confidence 444 444454 68889998888 47774 888999999987888775 678899999999988877755555 8899999
Q ss_pred CEEe-eeEECCCeEEcCCcccC
Q 014953 386 TKIK-YEQLKPICHIVETKYDS 406 (415)
Q Consensus 386 ~~i~-~~~i~~~~~i~~~~~~~ 406 (415)
|.|. |+.+..++.|+++..++
T Consensus 189 cliGAns~~veGV~vGdg~VV~ 210 (271)
T COG2171 189 CLIGANSEVVEGVIVGDGCVVA 210 (271)
T ss_pred cEeccccceEeeeEeCCCcEEe
Confidence 9998 99999999999998654
|
|
| >COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.20 E-value=8.8e-06 Score=70.35 Aligned_cols=118 Identities=22% Similarity=0.367 Sum_probs=81.1
Q ss_pred cceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccC-CcEEEEEcccCh--hHHHHHHHhhccCCCCc
Q 014953 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNS--ASLNRHLARAYNYGSGV 83 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~g-i~~I~vv~~~~~--~~i~~~l~~~~~~~~~~ 83 (415)
+++.+||-|--.+||| .-|.|+|+++. |||+++|++++++. +++++|.++... +.+.++.... |
T Consensus 2 ~~I~~IiQARmgStRL------pgKvLlpL~~~-pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~~-----G- 68 (241)
T COG1861 2 SMILVIIQARMGSTRL------PGKVLLPLGGE-PMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRSH-----G- 68 (241)
T ss_pred CcEEEEeeecccCccC------CcchhhhcCCC-chHHHHHHHHhccccccceEEEecCCcchhHHHHHHHHc-----C-
Confidence 4555566666667888 57999999999 99999999999875 678999998765 3454444321 1
Q ss_pred ccCCceEEEecCccCCCCCCCccccchH-HHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHHHHHcCCcEE
Q 014953 84 TFGDGCVEVLAATQTPGEAGKRWFQGTA-DAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADIT 160 (415)
Q Consensus 84 ~~~~~~v~i~~~~~~~~~~~~~~~~Gt~-~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~h~~~~~~~t 160 (415)
+.+. .|+. +.|......++. .+.+.++=+.||. +.+.+ +..+++.|.+++++.+
T Consensus 69 ------~~vf--------------rGs~~dVL~Rf~~a~~a---~~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~gaDY~ 125 (241)
T COG1861 69 ------FYVF--------------RGSEEDVLQRFIIAIKA---YSADVVVRVTGDNPFLDPELVDAAVDRHLEKGADYV 125 (241)
T ss_pred ------eeEe--------------cCCHHHHHHHHHHHHHh---cCCCeEEEeeCCCCCCCHHHHHHHHHHHHhcCCccc
Confidence 2221 3544 444444444443 2256888899999 66666 4788999999987643
|
|
| >TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.19 E-value=6.5e-06 Score=74.97 Aligned_cols=98 Identities=12% Similarity=0.203 Sum_probs=55.5
Q ss_pred eee-cCCccc-cceECCCCEEc-ceEEe-ee-EEccCcEECCCcEEee-cEEeCCccccchhHHHhhh-hCCCcceEeCC
Q 014953 312 SKI-DDSKIV-DSIISHGSFIT-SSFIE-HS-VVGIRSRINANVHLKD-TMMLGADFYETDAEVASLL-AEGRVPVGIGE 384 (415)
Q Consensus 312 ~~i-~~~~i~-~~~ig~~~~I~-~~~i~-~s-vig~~~~ig~~~~i~~-sii~~~~~~~~~~~~~~~~-~~~~~~~~Ig~ 384 (415)
++| ++.+++ .++||+||+|. ++.|. ++ .||++ .| +++|.. |+|+++++|..++.+.-.+ +.++.|+.||+
T Consensus 154 VRI~~~~rVRlGAyLGeGtvVm~~a~VN~nAgtIG~~-iI--~g~I~HdvvIGd~~~IgpGvsI~G~LsGg~~~pV~IGe 230 (319)
T TIGR03535 154 VRIGDADRVRLGAHLAEGTTVMHEGFVNFNAGTLGAS-MV--EGRISAGVVVGDGSDIGGGASIMGTLSGGGKEVISIGE 230 (319)
T ss_pred cEECCCceeeeccEECCCCEEcCCCEEccCceEecCc-eE--EEEEccCCEECCCCEECCCceecceecCCCcccEEECC
Confidence 444 333443 46666666665 34442 34 34443 33 233333 5556666666666554433 34455788888
Q ss_pred CCEEe-eeEECCCeEEcCCccc--Ccccccccc
Q 014953 385 NTKIK-YEQLKPICHIVETKYD--SSTISRFSL 414 (415)
Q Consensus 385 ~~~i~-~~~i~~~~~i~~~~~~--~~~~~~~~~ 414 (415)
+|.|. +|.| ++.||+++.+ -..+.++|+
T Consensus 231 ~~~IGagA~I--GI~IGd~~VVGAGaVVtkgT~ 261 (319)
T TIGR03535 231 RCLLGANSGL--GISLGDDCVVEAGLYVTAGTK 261 (319)
T ss_pred CcEECCCCEE--CeEECCCCEECCCCEEeCCeE
Confidence 88888 8888 7888888752 233444443
|
Alternate name: tetrahydrodipicolinate N-succinyltransferase. |
| >PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.6e-05 Score=71.19 Aligned_cols=116 Identities=22% Similarity=0.308 Sum_probs=75.7
Q ss_pred EEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccC-CcEEEEEcccChhHHHHHHHhhccCCCCcccCCce
Q 014953 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVTFGDGC 89 (415)
Q Consensus 11 aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~g-i~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 89 (415)
|||.|-|.++|+ .-|.|.+++|+ |||+|+++++.+++ +++|+|.|.. +++.+.+.+. + . .
T Consensus 2 aiIpAR~gS~rl------p~Knl~~l~gk-pLi~~~i~~a~~s~~~d~IvVaTd~--~~i~~~~~~~---g------~-~ 62 (217)
T PF02348_consen 2 AIIPARGGSKRL------PGKNLKPLGGK-PLIEYVIERAKQSKLIDEIVVATDD--EEIDDIAEEY---G------A-K 62 (217)
T ss_dssp EEEEE-SSSSSS------TTGGGSEETTE-EHHHHHHHHHHHTTTTSEEEEEESS--HHHHHHHHHT---T------S-E
T ss_pred EEEecCCCCCCC------CcchhhHhCCc-cHHHHHHHHHHhCCCCCeEEEeCCC--HHHHHHHHHc---C------C-e
Confidence 899999999999 57999999999 99999999999865 7898888753 4555555431 1 1 1
Q ss_pred EEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHHHHHcCCc
Q 014953 90 VEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGAD 158 (415)
Q Consensus 90 v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~h~~~~~~ 158 (415)
+...+.... .++......+..+..+ ..+.++.+.||. +.+.. +..+++.+.+..++
T Consensus 63 v~~~~~~~~---------~~~~r~~~~~~~~~~~----~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~ 120 (217)
T PF02348_consen 63 VIFRRGSLA---------DDTDRFIEAIKHFLAD----DEDIVVRLQGDSPLLDPTSIDRAIEDIREANED 120 (217)
T ss_dssp EEE--TTSS---------SHHHHHHHHHHHHTCS----TTSEEEEESTTETT--HHHHHHHHHHHHHSTTS
T ss_pred eEEcChhhc---------CCcccHHHHHHHhhhh----HHhhccccCCeeeECCHHHHHHHHHHHhcCchh
Confidence 222222211 2444333333333321 134789999999 55554 78899988888765
|
7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C .... |
| >COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.16 E-value=4.5e-05 Score=73.64 Aligned_cols=213 Identities=18% Similarity=0.274 Sum_probs=122.8
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeC-Ccceeehhehhhhhc----cCCc-EEEEEcccChhHHHHHHHhhccC
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIG-GAYRLIDVPMSNCIN----SGIN-KVYILTQYNSASLNRHLARAYNY 79 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~-g~~pli~~~l~~l~~----~gi~-~I~vv~~~~~~~i~~~l~~~~~~ 79 (415)
-.++-+|+||||+|+||+ ...||.+++|. |+ ++++.+.+.++. .+++ ..++-++...++-..++....-+
T Consensus 103 ~~klAvl~LaGGqGtrlG---~~gPKgl~~V~~gk-s~~dl~~~qIk~ln~~~~~~vP~~iMtS~nt~~t~s~f~~~~Y~ 178 (472)
T COG4284 103 LGKLAVLKLAGGQGTRLG---CDGPKGLFEVKDGK-SLFDLQAEQIKYLNRQYNVDVPLYIMTSLNTEETDSYFKSNDYF 178 (472)
T ss_pred cCceEEEEecCCcccccc---cCCCceeEEecCCC-cHHHHHHHHHHHHHHHhCCCCCEEEEecCCcHHHHHHHhhhhhc
Confidence 356789999999999998 78999999999 66 999999887764 3443 55666777765555555432112
Q ss_pred CC-Cccc---CCceEE-EecCccCC----CCC-CCccccchHH---HHHHhhhhhcCCCCCCcCeEEEEcCCeecc-cCh
Q 014953 80 GS-GVTF---GDGCVE-VLAATQTP----GEA-GKRWFQGTAD---AVRQFHWLFEDPRNKVIEDVLILSGDHLYR-MDY 145 (415)
Q Consensus 80 ~~-~~~~---~~~~v~-i~~~~~~~----~~~-~~~~~~Gt~~---al~~~~~~i~~~~~~~~~~~lv~~gD~i~~-~~l 145 (415)
+. ..++ ...... +......+ .+. -.-+|.|.|+ +|... ..++++...+.+.+.|.+.|.+.. .|
T Consensus 179 ~~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~S-G~le~l~~~G~e~lfV~nIDNL~~~vD- 256 (472)
T COG4284 179 GLDKEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSS-GILEKLIAQGIEYLFVSNIDNLGATVD- 256 (472)
T ss_pred CCCHHHeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhc-chHHHHHhcCceEEEEecccccccccC-
Confidence 21 1111 000011 11111110 000 0112345554 44431 022222223468999999999443 34
Q ss_pred HHHHHHHHHcCCcEEEEEEEcCCCcCCcccEEE-ECCCCCeEEEEEcCCcccccccccccccccccccccccccceee-e
Q 014953 146 MDFVQNHRQSGADITISCLPMDDSRASDFGLMK-INNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIAS-M 223 (415)
Q Consensus 146 ~~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~-~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~ 223 (415)
-.++.++...+.+.++=++....+ ...-|+++ .|..-||+.+.+-|........ ..........+ .
T Consensus 257 ~~~lg~~~~~~~e~~~e~t~Kt~a-~ekvG~Lv~~~g~~rllEysev~~~~~~~~~-----------s~~~~~~~n~Nni 324 (472)
T COG4284 257 LKFLGFMAETNYEYLMETTDKTKA-DEKVGILVTYDGKLRLLEYSEVPNEHREEFT-----------SDGKLKYFNTNNI 324 (472)
T ss_pred HHHHHHHHhcCcceeEEEeecccc-cccceEEEEeCCceEEEEEecCChhHhhhhc-----------cccceeeeccccc
Confidence 368888999999988877665543 35567666 6666788888887764221000 00001122334 6
Q ss_pred eEEEEeHHHHHHH
Q 014953 224 GVYLFKKEILLNL 236 (415)
Q Consensus 224 Giyi~~~~~l~~~ 236 (415)
++++++.+++...
T Consensus 325 ~l~~~~~~~l~~~ 337 (472)
T COG4284 325 WLHLFSVKFLKEA 337 (472)
T ss_pred eeehhHHHHHHhh
Confidence 7888888877543
|
|
| >PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase [] | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.3e-05 Score=78.68 Aligned_cols=95 Identities=21% Similarity=0.355 Sum_probs=60.5
Q ss_pred CeEEEEcCCe-ecccChHHHHHHHHHcCCcEEEEEEEcCCCcCCcccEEEECCCC---------CeEEEEEcCCcccccc
Q 014953 130 EDVLILSGDH-LYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEG---------RVLSFSEKPKGKDLKA 199 (415)
Q Consensus 130 ~~~lv~~gD~-i~~~~l~~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~---------~v~~~~ek~~~~~~~~ 199 (415)
.-++|..+|. +...+ ...+.. .++.++++..+.+-.-..+.|++.+|+++ .+..+.-||....-.
T Consensus 54 pGv~V~s~D~vl~~~~-~~~~~~---~~~g~~~la~p~~~~~at~HGVfv~~~~~~~~~~~~~~~v~~~L~KpS~eem~- 128 (414)
T PF07959_consen 54 PGVLVCSGDMVLSVPD-DPLIDW---DEPGVTALAHPSSLEYATNHGVFVLDRQGPDEEDLEYREVKDFLQKPSEEEMR- 128 (414)
T ss_pred cceEEEecccccccCc-cccCCC---CCCCEEEEEeeCCHHHhcCCeEEEeCCCCCccccchhhhHHHhhcCCCHHHHH-
Confidence 3589999994 33333 112211 23677888888775556789999999888 788888888765321
Q ss_pred cccccccccccccccccccceeeeeEEEEeHHHHHHHHh
Q 014953 200 MAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLR 238 (415)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~ 238 (415)
... ........+.++|++.|+.+..+.++.
T Consensus 129 --~~~-------av~~~~~~~ldsG~~~~s~~~~e~L~~ 158 (414)
T PF07959_consen 129 --ASG-------AVLPDGNVLLDSGIVFFSSKAVESLLY 158 (414)
T ss_pred --hCC-------cccCCCcccccccceeccHHHHHHHHH
Confidence 000 001112356789999999987776654
|
; GO: 0016772 transferase activity, transferring phosphorus-containing groups |
| >PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.5e-05 Score=75.33 Aligned_cols=213 Identities=18% Similarity=0.232 Sum_probs=124.1
Q ss_pred cceEEEEEcCCCCCcccccccCCcccceeeC---Ccceeehhehhhhhcc--------------CCc-EEEEEcccC-hh
Q 014953 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIG---GAYRLIDVPMSNCINS--------------GIN-KVYILTQYN-SA 67 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~llpv~---g~~pli~~~l~~l~~~--------------gi~-~I~vv~~~~-~~ 67 (415)
.++-+|+||||.||||+ .+.||.|++|+ ++ ++++...+++.+. +.. .++|-++.. ++
T Consensus 115 gkvavvlLAGGqGTRLG---~~~PKg~~~Iglps~k-slfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~~ 190 (493)
T PLN02435 115 GKLAVVLLSGGQGTRLG---SSDPKGCFNIGLPSGK-SLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTDE 190 (493)
T ss_pred CCEEEEEeCCCcccccC---CCCCccceecCCCCCC-cHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcchhH
Confidence 56778899999999998 88999999884 67 8999998876431 111 346666644 57
Q ss_pred HHHHHHHhhccCCCCcccCCceEEEecCccCC----------CCCC--CccccchHHHHHHhhh--hhcCCCCCCcCeEE
Q 014953 68 SLNRHLARAYNYGSGVTFGDGCVEVLAATQTP----------GEAG--KRWFQGTADAVRQFHW--LFEDPRNKVIEDVL 133 (415)
Q Consensus 68 ~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~----------~~~~--~~~~~Gt~~al~~~~~--~i~~~~~~~~~~~l 133 (415)
...+++.+..-|+-. ...+.+.....-+ .+.. .-.|.|.|+-...... .+++....+.+.+.
T Consensus 191 ~T~~ff~~~~~FGl~----~~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~ 266 (493)
T PLN02435 191 ATRKFFESHKYFGLE----ADQVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVD 266 (493)
T ss_pred HHHHHHHhCCCCCCC----ccceEEEecCCcceECCCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEE
Confidence 788888764323311 1112221110000 0000 1124566665543321 23322223468999
Q ss_pred EEcCCee-cccChHHHHHHHHHcCCcEEEEEEEcCCCcCCcccEEEE-CCCCC--eEEEEEcCCcccccccccccccccc
Q 014953 134 ILSGDHL-YRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKI-NNEGR--VLSFSEKPKGKDLKAMAVDTTVLGL 209 (415)
Q Consensus 134 v~~gD~i-~~~~l~~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~-d~~~~--v~~~~ek~~~~~~~~~~~~~~~~~~ 209 (415)
+.+.|.+ ...---.++-++..++.++.+-+.+...+ .+.-|++.. +.+|+ |+.+.|-+.......
T Consensus 267 v~~vDN~L~~~~DP~flG~~~~~~~d~~~kVv~K~~~-~EkvG~i~~~~~~g~~~vvEYsEl~~~~~~~~---------- 335 (493)
T PLN02435 267 CYGVDNALVRVADPTFLGYFIDKGVASAAKVVRKAYP-QEKVGVFVRRGKGGPLTVVEYSELDQAMASAI---------- 335 (493)
T ss_pred EEecccccccccCHHHHHHHHhcCCceEEEeeecCCC-CCceeEEEEecCCCCEEEEEeccCCHHHHhcc----------
Confidence 9999994 43333567888888999988876655332 244576654 24554 566665543221100
Q ss_pred cccccccccceeeeeEEEEeHHHHHHHHh
Q 014953 210 SKQEAEEKPYIASMGVYLFKKEILLNLLR 238 (415)
Q Consensus 210 ~~~~~~~~~~l~~~Giyi~~~~~l~~~l~ 238 (415)
++.......+..+++.++|+-++|+.+.+
T Consensus 336 ~~~~g~L~~~~gnI~~h~fs~~fL~~~~~ 364 (493)
T PLN02435 336 NQQTGRLRYCWSNVCLHMFTLDFLNQVAN 364 (493)
T ss_pred CccccccccchhhHHHhhccHHHHHHHHH
Confidence 01112223467788899999999987643
|
|
| >cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=98.14 E-value=1e-05 Score=59.49 Aligned_cols=45 Identities=22% Similarity=0.218 Sum_probs=24.7
Q ss_pred cCCCeee-cCCccc-cceECCCCEEc-ceEEee---------eEEccCcEECCCcEE
Q 014953 308 NLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEH---------SVVGIRSRINANVHL 352 (415)
Q Consensus 308 i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i~~---------svig~~~~ig~~~~i 352 (415)
+++++.+ +++.+. ++.||++|.|+ ++.|.+ .+||++|.|++++.+
T Consensus 3 ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i 59 (78)
T cd00208 3 IGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVI 59 (78)
T ss_pred ECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccCCCccCCcEECCCcEECCCCEE
Confidence 3444444 344444 37777777777 455544 455555555555444
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. |
| >COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.14 E-value=8.7e-06 Score=69.29 Aligned_cols=39 Identities=18% Similarity=0.146 Sum_probs=29.3
Q ss_pred hhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCccccccc
Q 014953 372 LLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSSTISRFS 413 (415)
Q Consensus 372 ~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~ 413 (415)
.++++ |.||.|+.|- +-.||+|++||+++.+.+.+-.++
T Consensus 121 tIg~~---V~IGagAkILG~I~IGd~akIGA~sVVlkdVP~~~ 160 (194)
T COG1045 121 TIGNG---VYIGAGAKILGNIEIGDNAKIGAGSVVLKDVPPNA 160 (194)
T ss_pred ccCCC---eEECCCCEEEcceEECCCCEECCCceEccCCCCCc
Confidence 44555 8888888876 888888888888888777665544
|
|
| >PRK10502 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=5.2e-06 Score=72.18 Aligned_cols=69 Identities=14% Similarity=0.097 Sum_probs=33.9
Q ss_pred eeEEccCcEECCCcEEe---ecEEeCCccccchhHHHhh--h-hC-----CCcceEeCCCCEEe-eeEECCCeEEcCCcc
Q 014953 337 HSVVGIRSRINANVHLK---DTMMLGADFYETDAEVASL--L-AE-----GRVPVGIGENTKIK-YEQLKPICHIVETKY 404 (415)
Q Consensus 337 ~svig~~~~ig~~~~i~---~sii~~~~~~~~~~~~~~~--~-~~-----~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~ 404 (415)
+..||++|.|++++.|. +..|++++.|..++.+.+. . .+ ...+++||++|.|. +++|.++++|++++.
T Consensus 71 ~~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~i~Igd~~~Ig~~a~I~~Gv~Ig~~~v 150 (182)
T PRK10502 71 KLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTGSHDYSDPHFDLNTAPIVIGEGCWLAADVFVAPGVTIGSGAV 150 (182)
T ss_pred eEEECCCeEECCCceecccCceEECCCcEECCCeEEECCCCCCcCCCcccccCCEEEcCCcEEcCCCEEcCCCEECCCCE
Confidence 35555666666555554 2445555555544433211 0 00 00135566666665 666666666666554
Q ss_pred c
Q 014953 405 D 405 (415)
Q Consensus 405 ~ 405 (415)
.
T Consensus 151 I 151 (182)
T PRK10502 151 V 151 (182)
T ss_pred E
Confidence 3
|
|
| >cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH | Back alignment and domain information |
|---|
Probab=98.11 E-value=7.8e-06 Score=66.88 Aligned_cols=10 Identities=30% Similarity=0.448 Sum_probs=4.0
Q ss_pred ceECCCCEEc
Q 014953 322 SIISHGSFIT 331 (415)
Q Consensus 322 ~~ig~~~~I~ 331 (415)
+.||++|.|+
T Consensus 48 a~Ighd~~IG 57 (147)
T cd04649 48 VIVGKGSDVG 57 (147)
T ss_pred EEECCCCEEC
Confidence 3344444444
|
THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif. |
| >PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2 | Back alignment and domain information |
|---|
Probab=98.09 E-value=4.6e-05 Score=74.46 Aligned_cols=263 Identities=20% Similarity=0.261 Sum_probs=137.6
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhc----cCCc-EEEEEcccC-hhHHHHHHHhhccC
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCIN----SGIN-KVYILTQYN-SASLNRHLARAYNY 79 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~----~gi~-~I~vv~~~~-~~~i~~~l~~~~~~ 79 (415)
..++-+|+||||.||||+ .+.||.|+||.....+++..++++.. .|.. .++|-++.. +++..+++.+.+.+
T Consensus 54 ~~kvavl~LaGGlGTrlG---~~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~kyfg~ 130 (420)
T PF01704_consen 54 LGKVAVLKLAGGLGTRLG---CSGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEKYFGL 130 (420)
T ss_dssp TTCEEEEEEEESBSGCCT---ESSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHHGCGS
T ss_pred hCCEEEEEEcCcccCccC---CCCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHHhcCC
Confidence 457888999999999998 78999999996654788888877764 3433 455666544 57888999874322
Q ss_pred CCCcc-cCCceEEEecCccC-CCC-CC------Ccc-ccchHHHHHHhh--hhhcCCCCCCcCeEEEEcCCeecccChHH
Q 014953 80 GSGVT-FGDGCVEVLAATQT-PGE-AG------KRW-FQGTADAVRQFH--WLFEDPRNKVIEDVLILSGDHLYRMDYMD 147 (415)
Q Consensus 80 ~~~~~-~~~~~v~i~~~~~~-~~~-~~------~~~-~~Gt~~al~~~~--~~i~~~~~~~~~~~lv~~gD~i~~~~l~~ 147 (415)
..... |....+..+..... +-+ .. ..| |.|.|+...... ..+++....+.+.+.+.+.|.+...--..
T Consensus 131 ~~~v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~a~~Dp~ 210 (420)
T PF01704_consen 131 DVDVFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLGAVVDPV 210 (420)
T ss_dssp SCCEEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT-TT-HH
T ss_pred CcceEEEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCcccccCHH
Confidence 11110 11111111111110 000 00 011 346665443222 12222111336899999999966543346
Q ss_pred HHHHHHHcCCcEEEEEEEcCCCcCCcccEEEECCCCC--eEEEEEcCCcccccccccccccccccccccccccceeeeeE
Q 014953 148 FVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGR--VLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGV 225 (415)
Q Consensus 148 ~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~--v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi 225 (415)
++.++.++++++.+-+.+...+ .+.-|+++.. +|+ ++++.+-|..... .+ .......+.++|-
T Consensus 211 ~lG~~~~~~~~~~~evv~Kt~~-dek~Gvl~~~-~G~~~vvEysqip~~~~~-~~------------~~~~~~~~FntnN 275 (420)
T PF01704_consen 211 FLGYMIEKNADFGMEVVPKTSP-DEKGGVLCRY-DGKLQVVEYSQIPKEHMA-EF------------KDIKGFLLFNTNN 275 (420)
T ss_dssp HHHHHHHTT-SEEEEEEE-CST-TTSSEEEEEE-TTEEEEEEGGGS-HHGHH-HH------------TSTTTSBEEEEEE
T ss_pred HHHHHHhccchhheeeeecCCC-CCceeEEEEe-CCccEEEEeccCCHHHHH-hh------------hccccceEEEece
Confidence 8888899999998877776542 2445666542 454 4444443332110 00 0001134567888
Q ss_pred EEEeHHHHHHHHhhhCCC--------C-----C-----cccccchhhhcc-cceEEEEEeC-ceEEecCCHHHHHHHHHh
Q 014953 226 YLFKKEILLNLLRWRFPT--------A-----N-----DFGSEIIPASAN-EQFLKAYLFN-DYWEDIGTIRSFFEANLA 285 (415)
Q Consensus 226 yi~~~~~l~~~l~~~~~~--------~-----~-----~~~~~~l~~l~~-~~~i~~~~~~-g~~~di~t~~~y~~an~~ 285 (415)
-+++-++++++++..... . . .|+. ++-..+. -.+..++.++ ..|..+.+..|++....+
T Consensus 276 i~~~l~~l~~~~~~~~~~Lp~h~a~Kki~~~d~~~~~~q~Et-~i~~~i~~f~~~~~v~V~R~rF~PvKn~~dLl~~~Sd 354 (420)
T PF01704_consen 276 IWFSLDFLKRLLERDELQLPIHVAKKKIPYVDNGIKVIQFET-AIGFAIFQFDNSFAVEVPRDRFAPVKNTSDLLLVRSD 354 (420)
T ss_dssp EEEEHHHHHHHHHTTTCCS-EEEEEEESSEECTEEEEEEEEC-GGGGGGGGCTSEEEEEE-GGG--B-SSHHHHHHHHST
T ss_pred eeEEHHHHHHHHHhccccCccEEcchhcccccCCccEEeehh-hhhchHhhccCcEEEEEcHHHcCCccccCcceeeccc
Confidence 899999998887642111 0 0 0110 0111111 1123333433 568899999999988876
Q ss_pred hc
Q 014953 286 LT 287 (415)
Q Consensus 286 ~l 287 (415)
+-
T Consensus 355 ~y 356 (420)
T PF01704_consen 355 LY 356 (420)
T ss_dssp TE
T ss_pred ee
Confidence 54
|
7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A .... |
| >COG1043 LpxA Acyl-[acyl carrier protein] | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.1e-05 Score=70.56 Aligned_cols=79 Identities=18% Similarity=0.150 Sum_probs=40.4
Q ss_pred ccCCCeee-cCCccc-cceECCCCEEcceEEeeeEEccCcEECCCcEEee-cEEeCCccccchhHHHhhh-----hCCCc
Q 014953 307 RNLPPSKI-DDSKIV-DSIISHGSFITSSFIEHSVVGIRSRINANVHLKD-TMMLGADFYETDAEVASLL-----AEGRV 378 (415)
Q Consensus 307 ~i~~~~~i-~~~~i~-~~~ig~~~~I~~~~i~~svig~~~~ig~~~~i~~-sii~~~~~~~~~~~~~~~~-----~~~~~ 378 (415)
.|+|.+.| ++++|. ++.||+-|+|+. +..|++++.|++.++|.+ +.|+.++.|-+.+.++..- ..+..
T Consensus 5 ~IHPTAiIe~gA~ig~~V~IGpf~iIg~----~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T 80 (260)
T COG1043 5 KIHPTAIIEPGAEIGEDVKIGPFCIIGP----NVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPT 80 (260)
T ss_pred ccCcceeeCCCCCcCCCCEECceEEECC----CcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCce
Confidence 34444444 444442 566666666663 345555555555555544 5555555555555554211 11122
Q ss_pred ceEeCCCCEEe
Q 014953 379 PVGIGENTKIK 389 (415)
Q Consensus 379 ~~~Ig~~~~i~ 389 (415)
.+.||+||.|+
T Consensus 81 ~l~IG~~n~IR 91 (260)
T COG1043 81 RLIIGDNNTIR 91 (260)
T ss_pred EEEECCCCeEe
Confidence 35667776665
|
|
| >PRK11132 cysE serine acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=1e-05 Score=73.96 Aligned_cols=11 Identities=0% Similarity=-0.203 Sum_probs=4.7
Q ss_pred ccCccCCCeee
Q 014953 304 TSRRNLPPSKI 314 (415)
Q Consensus 304 ~~~~i~~~~~i 314 (415)
+.+.|++++.+
T Consensus 146 ~~a~IG~g~~I 156 (273)
T PRK11132 146 PAAKIGRGIML 156 (273)
T ss_pred CcceECCCeEE
Confidence 33444444444
|
|
| >PRK10191 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.8e-05 Score=65.74 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=12.2
Q ss_pred eEEccCcEECCCcEEee-cEEeCC
Q 014953 338 SVVGIRSRINANVHLKD-TMMLGA 360 (415)
Q Consensus 338 svig~~~~ig~~~~i~~-sii~~~ 360 (415)
++||++|.||+++.+.+ ..|+++
T Consensus 93 ~~IGd~~~Ig~~~~I~~~v~IG~~ 116 (146)
T PRK10191 93 PHIGNGVELGANVIILGDITIGNN 116 (146)
T ss_pred CEECCCcEEcCCCEEeCCCEECCC
Confidence 35666666666555543 444444
|
|
| >PLN02739 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.3e-05 Score=74.95 Aligned_cols=51 Identities=20% Similarity=0.157 Sum_probs=25.0
Q ss_pred ccccCccCCCeeec---CCccc-cceECCCCEEc-ceEEe---------eeEEccCcEECCCcEE
Q 014953 302 IYTSRRNLPPSKID---DSKIV-DSIISHGSFIT-SSFIE---------HSVVGIRSRINANVHL 352 (415)
Q Consensus 302 ~~~~~~i~~~~~i~---~~~i~-~~~ig~~~~I~-~~~i~---------~svig~~~~ig~~~~i 352 (415)
+.+.+.|+.++.|. ++.|. ++.||++|.|. +++|- +.+||++|.||+++.|
T Consensus 208 I~p~A~IG~Gv~IdHg~GVVIG~~avIGdnv~I~~gVTIGg~g~~~g~r~p~IGd~V~IGagA~I 272 (355)
T PLN02739 208 IHPAARIGKGILLDHGTGVVIGETAVIGDRVSILHGVTLGGTGKETGDRHPKIGDGALLGACVTI 272 (355)
T ss_pred cCCCccccCceEEecCCceEECCCCEECCCCEEcCCceeCCcCCcCCCCCcEECCCCEEcCCCEE
Confidence 44455555555552 23332 44555555554 34442 3456666666655554
|
|
| >PLN02357 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.4e-05 Score=75.38 Aligned_cols=59 Identities=14% Similarity=0.097 Sum_probs=33.5
Q ss_pred ccccCccCCCeeec---CCccc-cceECCCCEEc-ceEEe---------eeEEccCcEECCCcEEe-ecEEeCC
Q 014953 302 IYTSRRNLPPSKID---DSKIV-DSIISHGSFIT-SSFIE---------HSVVGIRSRINANVHLK-DTMMLGA 360 (415)
Q Consensus 302 ~~~~~~i~~~~~i~---~~~i~-~~~ig~~~~I~-~~~i~---------~svig~~~~ig~~~~i~-~sii~~~ 360 (415)
+.+.+.|+.++.+. ++.|. +++||++|.|. +++|. +++||++|.||.++.|. +..|+++
T Consensus 229 I~p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg~g~~~g~~~piIGd~V~IGagA~IlggV~IGdg 302 (360)
T PLN02357 229 IHPGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGTGKQSGDRHPKIGDGVLIGAGTCILGNITIGEG 302 (360)
T ss_pred eCCCCEECCCeEECCCCceEECCCCEECCCCEEeCCceecCccccCCccCceeCCCeEECCceEEECCeEECCC
Confidence 33444455555552 22332 35555555555 34442 47888888888887774 4666667
|
|
| >cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.4e-05 Score=61.77 Aligned_cols=16 Identities=25% Similarity=0.283 Sum_probs=6.2
Q ss_pred eEEccCcEECCCcEEe
Q 014953 338 SVVGIRSRINANVHLK 353 (415)
Q Consensus 338 svig~~~~ig~~~~i~ 353 (415)
+.||++|.|++++.|.
T Consensus 22 v~IG~~~~Ig~~~~i~ 37 (109)
T cd04647 22 ITIGDNVLIGPNVTIY 37 (109)
T ss_pred eEECCCCEECCCCEEE
Confidence 3333333333333333
|
MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form. |
| >PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=8e-05 Score=79.07 Aligned_cols=197 Identities=19% Similarity=0.221 Sum_probs=122.1
Q ss_pred eEEEEcCCeecccC--hHHHHHHHHHcCCcEEEEEEEcCCCcCCcccEEEECCC--CCeEEEEEcCCccccccccccccc
Q 014953 131 DVLILSGDHLYRMD--YMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNE--GRVLSFSEKPKGKDLKAMAVDTTV 206 (415)
Q Consensus 131 ~~lv~~gD~i~~~~--l~~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~--~~v~~~~ek~~~~~~~~~~~~~~~ 206 (415)
.++|..||++..++ +.+ -.+++++.+....+..-..+.|++..|.+ +++..+..||..+....+.
T Consensus 154 g~li~~gDv~~~f~~~~~~------~~~~~~~~~~~~~~~~~~~~HGVfv~~~~~~~~~~~~LqKps~eel~a~~----- 222 (974)
T PRK13412 154 HTLIASGDVYIRSEQPLQD------IPEADVVCYGLWVDPSLATNHGVFVSSRKSPERLDFMLQKPSLEELGGLS----- 222 (974)
T ss_pred ceEEEecchhhhccccccC------CCccCeEEEEeccChhhccCceEEEeCCCChHHHHHHhcCCCHHHHHhhh-----
Confidence 79999999976654 222 12355555555554444578999999876 6788888888866532221
Q ss_pred ccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC------CCcccccchhhhc----------ccceEEEEEeC-ce
Q 014953 207 LGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT------ANDFGSEIIPASA----------NEQFLKAYLFN-DY 269 (415)
Q Consensus 207 ~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~------~~~~~~~~l~~l~----------~~~~i~~~~~~-g~ 269 (415)
.....+.++|+|+|+.+....++.....+ ..++-.|++..|- ++.++....+. +.
T Consensus 223 --------~~~~~l~D~g~~~~~~~a~~~L~~~~~~~~~~~~~~~dlY~Df~~aLg~~~~~~~~el~~l~~~i~~L~~~~ 294 (974)
T PRK13412 223 --------KTHLFLMDIGIWLLSDRAVELLMKRSGKEDGGKLKYYDLYSDFGLALGTHPRIGDDELNALSVAILPLPGGE 294 (974)
T ss_pred --------cCCeEEEeeeEEEEChHHHHHHHHhhhcccCCcceeeehHHHHHHhcCCCCCcchhhhcccceEEEEcCCce
Confidence 11347899999999999887666542211 2233344544432 23456666665 56
Q ss_pred EEecCCHHHHHHHHHhhcCCCCC-CCccCCCCCccccCccCCCeeecCCccccceECCCCEEcc--eEEeeeEEccCcEE
Q 014953 270 WEDIGTIRSFFEANLALTAHPPM-FSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFITS--SFIEHSVVGIRSRI 346 (415)
Q Consensus 270 ~~di~t~~~y~~an~~~l~~~~~-~~~~~~~~~~~~~~~i~~~~~i~~~~i~~~~ig~~~~I~~--~~i~~svig~~~~i 346 (415)
|+-+||-+.|+.....+.+.... -..+... ..-.|. +.+.|+++++++.+++ ..|++|.|+.+++|
T Consensus 295 F~H~GTs~E~l~~~~~~q~~~~~~~~i~~~~------~~~~~~-----~~v~ns~~~~~~s~~~~s~~vE~s~l~~~~~i 363 (974)
T PRK13412 295 FYHYGTSRELISSTLAVQNLVTDQRRIMHRK------VKPHPA-----MFVQNAVLSGKLTAENATLWIENSHVGEGWKL 363 (974)
T ss_pred eEEecCcHHHhcCchhHHHHhhhhhhhhccc------cCCCCc-----eEEEeeEecCCcccCCCeEEEEeeEecCCeEE
Confidence 89999999988654333221100 0011111 111111 2336888999999984 34788999999999
Q ss_pred CCCcEEeecEE
Q 014953 347 NANVHLKDTMM 357 (415)
Q Consensus 347 g~~~~i~~sii 357 (415)
|.++.|.++..
T Consensus 364 g~~~Iisgv~~ 374 (974)
T PRK13412 364 ASRSIITGVPE 374 (974)
T ss_pred cCCcEEecccc
Confidence 99999988753
|
|
| >cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.6e-05 Score=64.99 Aligned_cols=40 Identities=13% Similarity=0.180 Sum_probs=31.7
Q ss_pred hhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 372 LLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 372 ~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
.++++ |.||.+|.|. ++.||+++.|++++.+.+.+.+++.
T Consensus 75 ~Ig~~---~~Ig~~~~i~~gv~Ig~~~vIgags~V~~~v~~~~v 115 (145)
T cd03349 75 IIGND---VWIGHGATILPGVTIGDGAVIAAGAVVTKDVPPYAI 115 (145)
T ss_pred EECCC---CEECCCCEEeCCCEECCCCEECCCCEEccccCCCeE
Confidence 44555 7888888886 8899999999999988888877764
|
Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. |
| >PLN02694 serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.9e-05 Score=71.14 Aligned_cols=14 Identities=7% Similarity=-0.064 Sum_probs=6.9
Q ss_pred ccChHHHHHHHHHc
Q 014953 142 RMDYMDFVQNHRQS 155 (415)
Q Consensus 142 ~~~l~~~l~~h~~~ 155 (415)
..+|.+.|.++...
T Consensus 57 ~~~~~~al~~~l~~ 70 (294)
T PLN02694 57 HSSLERSLSFHLGN 70 (294)
T ss_pred CcCHHHHHHHHHHH
Confidence 33455555555443
|
|
| >TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.1e-05 Score=72.11 Aligned_cols=12 Identities=0% Similarity=-0.250 Sum_probs=4.3
Q ss_pred ccccCccCCCee
Q 014953 302 IYTSRRNLPPSK 313 (415)
Q Consensus 302 ~~~~~~i~~~~~ 313 (415)
+..++.+++++.
T Consensus 187 Vr~gA~LGeGT~ 198 (341)
T TIGR03536 187 VRLGAYVGEGTT 198 (341)
T ss_pred EcCCcEECCCCE
Confidence 333333333333
|
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway. |
| >cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose | Back alignment and domain information |
|---|
Probab=97.95 E-value=8.4e-05 Score=69.45 Aligned_cols=218 Identities=12% Similarity=0.107 Sum_probs=120.2
Q ss_pred EEEEEcCCCCCcccccccCCcccceee---CCcceeehhehhhhhccC--------C-cEEEEEcccC-hhHHHHHHHhh
Q 014953 10 AAVILGGGAGTRLYPLTKQRAKPAVPI---GGAYRLIDVPMSNCINSG--------I-NKVYILTQYN-SASLNRHLARA 76 (415)
Q Consensus 10 ~aVILAaG~g~Rl~plt~~~pK~llpv---~g~~pli~~~l~~l~~~g--------i-~~I~vv~~~~-~~~i~~~l~~~ 76 (415)
.+|+||||.||||+ .+.||.|+|+ .|+ +++++.++++.+.. . -.++|-++.. +++..+++.+.
T Consensus 2 a~vllaGG~GTRLG---~~~pKg~~~v~~~~~~-s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~n 77 (315)
T cd06424 2 VFVLVAGGLGERLG---YSGIKIGLPVELTTNT-TYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEEN 77 (315)
T ss_pred EEEEecCCCccccC---CCCCceeeeccCCCCC-cHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHHC
Confidence 47899999999998 8899999999 478 99999998886532 1 1456667654 57788888764
Q ss_pred ccCCCCc-c---cCCceEEEec-CccCC----CCCC--CccccchHHHHHHhh--hhhcCCCCCCcCeEEEEcCCee-cc
Q 014953 77 YNYGSGV-T---FGDGCVEVLA-ATQTP----GEAG--KRWFQGTADAVRQFH--WLFEDPRNKVIEDVLILSGDHL-YR 142 (415)
Q Consensus 77 ~~~~~~~-~---~~~~~v~i~~-~~~~~----~~~~--~~~~~Gt~~al~~~~--~~i~~~~~~~~~~~lv~~gD~i-~~ 142 (415)
.-|+-.. + |....+-.+. ..... .+.. .-.+.|.|+-..... ..++++...+.+.+.+..-|.. ..
T Consensus 78 ~yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L~~ 157 (315)
T cd06424 78 NYFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNALAF 157 (315)
T ss_pred CccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhhhh
Confidence 3233110 0 1111111121 00000 0000 112456666554332 1222222234678888888884 33
Q ss_pred cChHHHHHHHHHcCCcEEEEEEEcCCCcCCcccEEEE--CCCCC--e--EEEEEcCCcccccccc-cccccccccccccc
Q 014953 143 MDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKI--NNEGR--V--LSFSEKPKGKDLKAMA-VDTTVLGLSKQEAE 215 (415)
Q Consensus 143 ~~l~~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~--d~~~~--v--~~~~ek~~~~~~~~~~-~~~~~~~~~~~~~~ 215 (415)
.-.-.++-.+..+++++...+.+... .+.-|+++. ..+|+ | +++.|-+......... -+. ++ ..-
T Consensus 158 ~adP~fiG~~~~~~~d~~~k~v~~~~--~E~vG~~~~~~~~~g~~~v~nvEYsel~~~~~~~~~~~g~~-----~~-~~~ 229 (315)
T cd06424 158 KAIPAVLGVSATKSLDMNSLTVPRKP--KEAIGALCKLTKNNGKSMTINVEYNQLDPLLRASGKDDGDV-----DD-KTG 229 (315)
T ss_pred ccChhhEEEEecCCCceEeEEEeCCC--CCceeeEEEEecCCCceEEEEEEeecCCHHHHhcCCCCCCc-----cc-ccc
Confidence 33456677777888888877665332 356676653 23443 3 6666554311100000 000 00 000
Q ss_pred cccceeeeeEEEEeHHHHHHHHhh
Q 014953 216 EKPYIASMGVYLFKKEILLNLLRW 239 (415)
Q Consensus 216 ~~~~l~~~Giyi~~~~~l~~~l~~ 239 (415)
.+.+-.+++.++|+-+.+.+.++.
T Consensus 230 ~s~f~gNi~~~~f~l~~~~~~l~~ 253 (315)
T cd06424 230 FSPFPGNINQLVFSLGPYMDELEK 253 (315)
T ss_pred cccCCCeeeeEEEeHHHHHHHHhh
Confidence 123467889999999988877764
|
UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f |
| >cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates | Back alignment and domain information |
|---|
Probab=97.89 E-value=8.5e-05 Score=63.80 Aligned_cols=24 Identities=25% Similarity=0.195 Sum_probs=13.4
Q ss_pred eEeCCCCEEe-eeEECCCeEEcCCccc
Q 014953 380 VGIGENTKIK-YEQLKPICHIVETKYD 405 (415)
Q Consensus 380 ~~Ig~~~~i~-~~~i~~~~~i~~~~~~ 405 (415)
++||+||.|. ++++.++ |++++..
T Consensus 137 v~Ig~~~~VgagavV~~~--vp~~~vv 161 (169)
T cd03357 137 VTIGDNSVIGAGSVVTKD--IPANVVA 161 (169)
T ss_pred CEECCCCEECCCCEEccc--cCCCcEE
Confidence 5666666665 5555553 5555543
|
MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=97.81 E-value=1.6e-05 Score=72.71 Aligned_cols=83 Identities=11% Similarity=0.016 Sum_probs=63.9
Q ss_pred CccccCccCCCeee-cCCccc-cceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCC
Q 014953 301 PIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGR 377 (415)
Q Consensus 301 ~~~~~~~i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~ 377 (415)
.+.....+.+-+.+ .+|.|+ |++||++|+|+ ++.+.+|.|..++.++..+.|..++++.++.|+-++ ++...
T Consensus 260 ~i~~nvlvd~~~~iG~~C~Ig~~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~~~IG~~~----~id~~- 334 (371)
T KOG1322|consen 260 KIVGNVLVDSIASIGENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWNVPIGIWA----RIDKN- 334 (371)
T ss_pred cccccEeeccccccCCccEECCCceECCCcEecCceEEEeeEEEccceechhHHHHhhhccccccccCce----EEecc-
Confidence 33334444444455 677776 59999999999 799999999999999999999999999998887776 33333
Q ss_pred cceEeCCCCEEee
Q 014953 378 VPVGIGENTKIKY 390 (415)
Q Consensus 378 ~~~~Ig~~~~i~~ 390 (415)
++||+|+.|.+
T Consensus 335 --a~lG~nV~V~d 345 (371)
T KOG1322|consen 335 --AVLGKNVIVAD 345 (371)
T ss_pred --cEeccceEEec
Confidence 77888888764
|
|
| >PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=5.8e-05 Score=66.21 Aligned_cols=85 Identities=13% Similarity=0.022 Sum_probs=54.6
Q ss_pred cceECCCCEEcceEEeeeEEccCcEECCCcEEe---ecEEeCCccccchhHHHhh-h----------------hCC---C
Q 014953 321 DSIISHGSFITSSFIEHSVVGIRSRINANVHLK---DTMMLGADFYETDAEVASL-L----------------AEG---R 377 (415)
Q Consensus 321 ~~~ig~~~~I~~~~i~~svig~~~~ig~~~~i~---~sii~~~~~~~~~~~~~~~-~----------------~~~---~ 377 (415)
++.++.+|++.--......||++|.|++++.|. +..|++++.|++++.+... . ..+ .
T Consensus 49 ~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~~~~~~~~ 128 (192)
T PRK09677 49 GFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPPDMRTLES 128 (192)
T ss_pred ceEECCCeEEEecCCCeEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccChhhccccc
Confidence 556666666631001246788888888887776 5777777777777655421 0 000 1
Q ss_pred cceEeCCCCEEe-eeEECCCeEEcCCccc
Q 014953 378 VPVGIGENTKIK-YEQLKPICHIVETKYD 405 (415)
Q Consensus 378 ~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~ 405 (415)
.+++||++|.|. +++|.++++|++++.+
T Consensus 129 ~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~I 157 (192)
T PRK09677 129 SAVVIGQRVWIGENVTILPGVSIGNGCIV 157 (192)
T ss_pred CCeEEcCCcEECCCCEEcCCCEECCCCEE
Confidence 147788888887 8888888888888764
|
|
| >PRK10092 maltose O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=8.6e-05 Score=64.39 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=11.6
Q ss_pred eEeCCCCEEe-eeEECCCeEEcCCc
Q 014953 380 VGIGENTKIK-YEQLKPICHIVETK 403 (415)
Q Consensus 380 ~~Ig~~~~i~-~~~i~~~~~i~~~~ 403 (415)
++||++|+|. ++++.++ |++++
T Consensus 148 v~IG~~~vIgagsvV~~d--i~~~~ 170 (183)
T PRK10092 148 VTIGDNVVVASGAVVTKD--VPDNV 170 (183)
T ss_pred CEECCCCEECCCCEEccc--cCCCc
Confidence 5566665555 5555544 34444
|
|
| >KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.77 E-value=3.3e-05 Score=61.62 Aligned_cols=27 Identities=11% Similarity=0.022 Sum_probs=16.4
Q ss_pred eEeCCCCEEe-eeEECCCeEEcCCcccC
Q 014953 380 VGIGENTKIK-YEQLKPICHIVETKYDS 406 (415)
Q Consensus 380 ~~Ig~~~~i~-~~~i~~~~~i~~~~~~~ 406 (415)
++||.+|+++ -|.|-++..+++.+.++
T Consensus 114 aviGrrCVlkdCc~ild~tVlPpet~vp 141 (184)
T KOG3121|consen 114 AVIGRRCVLKDCCRILDDTVLPPETLVP 141 (184)
T ss_pred eeEcCceEhhhheeccCCcccCcccccC
Confidence 5566666665 56666666666666543
|
|
| >PRK09527 lacA galactoside O-acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.75 E-value=5.8e-05 Score=66.39 Aligned_cols=31 Identities=13% Similarity=-0.028 Sum_probs=15.7
Q ss_pred cCccCCCeee-cCCccc---cceECCCCEEc-ceEE
Q 014953 305 SRRNLPPSKI-DDSKIV---DSIISHGSFIT-SSFI 335 (415)
Q Consensus 305 ~~~i~~~~~i-~~~~i~---~~~ig~~~~I~-~~~i 335 (415)
...++.++++ .++.+. +..||++|.|+ ++.|
T Consensus 75 ni~IG~~v~In~~~~I~d~~~I~IGd~v~Ig~~v~I 110 (203)
T PRK09527 75 NIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTL 110 (203)
T ss_pred CcEEcCCcEECCCcEEecCCCEEECCCCEECCCCEE
Confidence 3445555555 344442 35566666666 4444
|
|
| >cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00013 Score=56.79 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=18.5
Q ss_pred cceECCCCEEc-ceE---EeeeEEccCcEECCCcEEee
Q 014953 321 DSIISHGSFIT-SSF---IEHSVVGIRSRINANVHLKD 354 (415)
Q Consensus 321 ~~~ig~~~~I~-~~~---i~~svig~~~~ig~~~~i~~ 354 (415)
++.|+.+++|+ ++. +.+++||++|.|+.++.+..
T Consensus 34 ~~~i~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~ 71 (101)
T cd03354 34 NCTIYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILG 71 (101)
T ss_pred CCEEcCCCEECCCccCCcCCCCEECCCcEEcCCCEEEC
Confidence 34444444444 222 34556777777777766654
|
This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain. |
| >cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00023 Score=56.02 Aligned_cols=11 Identities=18% Similarity=0.238 Sum_probs=6.5
Q ss_pred cceECCCCEEc
Q 014953 321 DSIISHGSFIT 331 (415)
Q Consensus 321 ~~~ig~~~~I~ 331 (415)
...||++|.|+
T Consensus 23 ~i~IG~~~~I~ 33 (107)
T cd05825 23 PVTIGSDACIS 33 (107)
T ss_pred ceEECCCCEEC
Confidence 35566666666
|
coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms. |
| >KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.66 E-value=7e-05 Score=60.29 Aligned_cols=95 Identities=13% Similarity=0.253 Sum_probs=56.9
Q ss_pred CccCCCeee-cCCcc-ccceECCCCEEcc-eEEe----eeEEccCcEECCCcEEee--------------cEEeCCcccc
Q 014953 306 RRNLPPSKI-DDSKI-VDSIISHGSFITS-SFIE----HSVVGIRSRINANVHLKD--------------TMMLGADFYE 364 (415)
Q Consensus 306 ~~i~~~~~i-~~~~i-~~~~ig~~~~I~~-~~i~----~svig~~~~ig~~~~i~~--------------sii~~~~~~~ 364 (415)
..|.|.+.+ ..+.| ++..|+++|++.. +++. --+||+|+.|.+.+.|.+ -+|+.+.+-+
T Consensus 9 vkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFe 88 (190)
T KOG4042|consen 9 VKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFE 88 (190)
T ss_pred eeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEE
Confidence 445555555 33444 3677777777763 3331 357777777777777666 3455555556
Q ss_pred chhHHHh-hhhCCCc---ceEeCCCCEEe-eeEECCCeEEc
Q 014953 365 TDAEVAS-LLAEGRV---PVGIGENTKIK-YEQLKPICHIV 400 (415)
Q Consensus 365 ~~~~~~~-~~~~~~~---~~~Ig~~~~i~-~~~i~~~~~i~ 400 (415)
-||...+ -+|++.+ .+.+|+||.+. +|++|..++|.
T Consensus 89 Vgc~s~A~kvGd~NVieskayvg~gv~vssgC~vGA~c~v~ 129 (190)
T KOG4042|consen 89 VGCKSSAKKVGDRNVIESKAYVGDGVSVSSGCSVGAKCTVF 129 (190)
T ss_pred eechhhhhhhcCcceEeeeeEecCCcEEcCCceeccceEEe
Confidence 6665554 4555544 36677777776 67777666654
|
|
| >PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00039 Score=60.20 Aligned_cols=95 Identities=14% Similarity=0.140 Sum_probs=59.8
Q ss_pred CcccceeeCC--cceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCceEEEecCccCCCCCCCcc
Q 014953 29 RAKPAVPIGG--AYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRW 106 (415)
Q Consensus 29 ~pK~llpv~g--~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ 106 (415)
.+|+|+++.| + |||+|+++.+. ..+++++|+++... .. . . .+ +.++.+...
T Consensus 3 ~dK~ll~~~g~~~-~ll~~~~~~l~-~~~~~iivv~~~~~-~~----~-----~----~~---~~~i~d~~~-------- 55 (178)
T PRK00576 3 RDKATLPLPGGTT-TLVEHVVGIVG-QRCAPVFVMAAPGQ-PL----P-----E----LP---APVLRDELR-------- 55 (178)
T ss_pred CCCEeeEeCCCCc-CHHHHHHHHHh-hcCCEEEEECCCCc-cc----c-----c----CC---CCEeccCCC--------
Confidence 5899999999 9 99999999876 46899999987542 11 0 0 01 123322211
Q ss_pred ccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHHHH
Q 014953 107 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHR 153 (415)
Q Consensus 107 ~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~h~ 153 (415)
..|...++..++..... ...+.+++++||+ +.+.+ +..+++.+.
T Consensus 56 g~gpl~~~~~gl~~~~~---~~~~~~lv~~~DmP~i~~~~i~~L~~~~~ 101 (178)
T PRK00576 56 GLGPLPATGRGLRAAAE---AGARLAFVCAVDMPYLTVELIDDLARPAA 101 (178)
T ss_pred CCCcHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 13666666555433211 0147999999999 55655 567766543
|
|
| >PLN02830 UDP-sugar pyrophosphorylase | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0018 Score=66.07 Aligned_cols=221 Identities=15% Similarity=0.152 Sum_probs=120.9
Q ss_pred cceEEEEEcCCCCCcccccccCCcccceee---CCcceeehhehhhhhcc-----------CC-cEEEEEcccC-hhHHH
Q 014953 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPI---GGAYRLIDVPMSNCINS-----------GI-NKVYILTQYN-SASLN 70 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~llpv---~g~~pli~~~l~~l~~~-----------gi-~~I~vv~~~~-~~~i~ 70 (415)
.++-.|+||||.||||+ ...||.++|+ .|+ ++++..++++... +. -.++|-++.. ++...
T Consensus 127 ~kvavllLaGGlGTRLG---~~~pK~~lpv~~~~gk-t~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T~ 202 (615)
T PLN02830 127 GNAAFVLVAGGLGERLG---YSGIKVALPTETATGT-CYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHARTL 202 (615)
T ss_pred CcEEEEEecCCcccccC---CCCCCcceecccCCCC-cHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHHH
Confidence 57888999999999998 7899999998 367 9999999887653 11 1456666654 57788
Q ss_pred HHHHhhccCCCCc-c---cCCceEEEecCc-cCC--CC--CC--CccccchHHHHHHhh--hhhcCCCCCCcCeEEEEcC
Q 014953 71 RHLARAYNYGSGV-T---FGDGCVEVLAAT-QTP--GE--AG--KRWFQGTADAVRQFH--WLFEDPRNKVIEDVLILSG 137 (415)
Q Consensus 71 ~~l~~~~~~~~~~-~---~~~~~v~i~~~~-~~~--~~--~~--~~~~~Gt~~al~~~~--~~i~~~~~~~~~~~lv~~g 137 (415)
+++.++.-|+-.. + |....+..+... ... .+ .. .-.+.|.|+-..... ..++++...+.+.+.+...
T Consensus 203 ~~~~~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~v 282 (615)
T PLN02830 203 KLLERNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQD 282 (615)
T ss_pred HHHHHCCccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEec
Confidence 8887643233111 0 000001111100 000 00 00 013446655443332 2222222234689999999
Q ss_pred Cee-cccChHHHHHHHHHcCCcEEEEEEEcCCCcCCcccEEEE--CCCCC----eEEEEEcCCcccccccccc-cccccc
Q 014953 138 DHL-YRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKI--NNEGR----VLSFSEKPKGKDLKAMAVD-TTVLGL 209 (415)
Q Consensus 138 D~i-~~~~l~~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~--d~~~~----v~~~~ek~~~~~~~~~~~~-~~~~~~ 209 (415)
|.. ...-.-.++.++..+++++.+.+.+... .+.-|+++. ..+|+ ++.|.+.+...... ..+ ..+.
T Consensus 283 DN~L~~~Adp~flG~~~~~~~d~~~kvv~K~~--~E~vGvi~~~~~~dG~~l~~vVEYse~~~ll~~a--~~p~g~l~-- 356 (615)
T PLN02830 283 TNGLVFKAIPAALGVSATKGFDMNSLAVPRKA--KEAIGAIAKLTHKDGREMVINVEYNQLDPLLRAT--GHPDGDVN-- 356 (615)
T ss_pred cchhhhcccHHHhHHHHhcCCceEEEEEECCC--CcccceEEEEecCCCCeeeEEEeecccCHHHHhc--cCCCcccc--
Confidence 993 3222367888899999999887776632 355666654 23444 33454443221000 000 0000
Q ss_pred cccccccccceeeeeEEEEeHHHHHHHHhh
Q 014953 210 SKQEAEEKPYIASMGVYLFKKEILLNLLRW 239 (415)
Q Consensus 210 ~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~ 239 (415)
.... .+.+-.++...+++-..+.+.+++
T Consensus 357 -~~~~-~s~FPgNtN~L~v~L~a~~~~l~~ 384 (615)
T PLN02830 357 -DETG-YSPFPGNINQLILKLGPYVKELAK 384 (615)
T ss_pred -cccc-cccCCCCceeeEeeHHHHHHHHHh
Confidence 0000 111223788888898888777764
|
|
| >TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00039 Score=72.88 Aligned_cols=79 Identities=13% Similarity=0.047 Sum_probs=42.3
Q ss_pred cceECCCCEEcceEE---eeeEEccCcEECCCcEEeecEEeCCccccchhHHH-hhhhCCCcceEeCCCCEEe-eeEECC
Q 014953 321 DSIISHGSFITSSFI---EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVA-SLLAEGRVPVGIGENTKIK-YEQLKP 395 (415)
Q Consensus 321 ~~~ig~~~~I~~~~i---~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~-~~~~~~~~~~~Ig~~~~i~-~~~i~~ 395 (415)
.+.||+||.|+...+ ....||+||.|+++|.+.+..+.++. + .+. ..|+++ |.||.+|.|. ++.||+
T Consensus 112 Ga~IG~~v~I~~~~~~~~~li~IG~~~~I~~~v~l~~~~~~~~~-l----~~g~i~IG~~---~~IG~~s~I~~g~~Igd 183 (695)
T TIGR02353 112 GAKIGKGVDIGSLPPVCTDLLTIGAGTIVRKEVMLLGYRAERGR-L----HTGPVTLGRD---AFIGTRSTLDIDTSIGD 183 (695)
T ss_pred CCEECCCCEEEeeecccCCceEECCCCEECCCCEEEcccCCCCc-e----eecCcEECCC---cEECCCCEEcCCCEECC
Confidence 345555555553111 23446666666666665543322111 0 011 133444 7777777775 777777
Q ss_pred CeEEcCCcccCc
Q 014953 396 ICHIVETKYDSS 407 (415)
Q Consensus 396 ~~~i~~~~~~~~ 407 (415)
++.|++++.+.+
T Consensus 184 ~a~vgagS~V~~ 195 (695)
T TIGR02353 184 GAQLGHGSALQG 195 (695)
T ss_pred CCEECCCCEecC
Confidence 777777776655
|
This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size. |
| >PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00013 Score=44.98 Aligned_cols=32 Identities=22% Similarity=0.304 Sum_probs=16.8
Q ss_pred ceECCCCEEc-ceEE-eeeEEccCcEECCCcEEe
Q 014953 322 SIISHGSFIT-SSFI-EHSVVGIRSRINANVHLK 353 (415)
Q Consensus 322 ~~ig~~~~I~-~~~i-~~svig~~~~ig~~~~i~ 353 (415)
+.||++|.|+ ++.| .++.||++|.|++++.|.
T Consensus 2 ~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I~ 35 (36)
T PF00132_consen 2 VVIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVIG 35 (36)
T ss_dssp EEEETTEEEETTEEEETTEEE-TTEEEETTEEEE
T ss_pred CEEcCCCEECCCcEecCCCEECCCCEEcCCCEEC
Confidence 4556666665 3443 345566666665555554
|
A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F .... |
| >TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00044 Score=72.47 Aligned_cols=86 Identities=10% Similarity=0.171 Sum_probs=46.0
Q ss_pred cceECCCCEEcc-eEEe--eeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEe-eeEECCC
Q 014953 321 DSIISHGSFITS-SFIE--HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-YEQLKPI 396 (415)
Q Consensus 321 ~~~ig~~~~I~~-~~i~--~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~~i~~~ 396 (415)
++.||.+|.|+. ..++ -+.||++|.|++++.|..-. ..+..++- -...|+++ |.||.+|+|. ++.||++
T Consensus 597 Ga~IG~~v~i~~~~~~~~dlv~IGd~~~I~~~~~i~~h~-~~~~~~~~---~~v~IG~~---~~IG~~a~V~~g~~IGd~ 669 (695)
T TIGR02353 597 GVKIGRGVYIDGTDLTERDLVTIGDDSTLNEGSVIQTHL-FEDRVMKS---DTVTIGDG---ATLGPGAIVLYGVVMGEG 669 (695)
T ss_pred CCEECCCeEECCeeccCCCCeEECCCCEECCCCEEEecc-cccccccc---CCeEECCC---CEECCCCEECCCCEECCC
Confidence 455566666652 2221 25777777777777764311 11111100 01233334 7777777775 7777777
Q ss_pred eEEcCCcccCc--cccccc
Q 014953 397 CHIVETKYDSS--TISRFS 413 (415)
Q Consensus 397 ~~i~~~~~~~~--~~~~~~ 413 (415)
+.|++++.+.+ .+.++|
T Consensus 670 a~Ig~~SvV~~g~~vp~~s 688 (695)
T TIGR02353 670 SVLGPDSLVMKGEEVPAHT 688 (695)
T ss_pred CEECCCCEEcCCcccCCCC
Confidence 77777776655 454443
|
This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size. |
| >COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00056 Score=58.45 Aligned_cols=57 Identities=16% Similarity=0.120 Sum_probs=32.1
Q ss_pred CCccccCccCCCeee-c--CCcc-ccceECCCCEEc-ceEE---------eeeEEccCcEECCCcEEeecE
Q 014953 300 KPIYTSRRNLPPSKI-D--DSKI-VDSIISHGSFIT-SSFI---------EHSVVGIRSRINANVHLKDTM 356 (415)
Q Consensus 300 ~~~~~~~~i~~~~~i-~--~~~i-~~~~ig~~~~I~-~~~i---------~~svig~~~~ig~~~~i~~si 356 (415)
-.+.+.+.|+++..| . +..| +.+.||++|.|. +++| .+=.||++|.||+||+|-+-|
T Consensus 68 ieIhp~A~IG~g~fIdHg~GvVIgeta~IGddv~I~~gVTLGgtg~~~g~RhPtIg~~V~IGagAkILG~I 138 (194)
T COG1045 68 IEIHPGAKIGRGLFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGNI 138 (194)
T ss_pred eeeCCCCeECCceEEcCCceEEEcceeEECCCeEEEcceEecCCCCcCCCCCCccCCCeEECCCCEEEcce
Confidence 345555666666666 1 2222 245555555554 3333 234788888888887765543
|
|
| >PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00072 Score=40.92 Aligned_cols=29 Identities=31% Similarity=0.337 Sum_probs=10.1
Q ss_pred eECCCCEEc-ceEEeeeEEccCcEECCCcEE
Q 014953 323 IISHGSFIT-SSFIEHSVVGIRSRINANVHL 352 (415)
Q Consensus 323 ~ig~~~~I~-~~~i~~svig~~~~ig~~~~i 352 (415)
.||++|.|+ ++.+ ...||++|.|++++.|
T Consensus 3 ~IG~~~~ig~~~~i-gi~igd~~~i~~g~~I 32 (34)
T PF14602_consen 3 TIGDNCFIGANSTI-GITIGDGVIIGAGVVI 32 (34)
T ss_dssp EE-TTEEE-TT-EE-TSEE-TTEEE-TTEEE
T ss_pred EECCCEEECccccc-CCEEcCCCEECCCCEE
Confidence 344444444 2332 2444444444444443
|
... |
| >PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00068 Score=41.65 Aligned_cols=14 Identities=29% Similarity=0.283 Sum_probs=7.0
Q ss_pred eEEccCcEECCCcE
Q 014953 338 SVVGIRSRINANVH 351 (415)
Q Consensus 338 svig~~~~ig~~~~ 351 (415)
+.||++|.|++++.
T Consensus 2 ~~Ig~~~~i~~~~~ 15 (36)
T PF00132_consen 2 VVIGDNVIIGPNAV 15 (36)
T ss_dssp EEEETTEEEETTEE
T ss_pred CEEcCCCEECCCcE
Confidence 44555555554444
|
A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F .... |
| >COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0025 Score=55.68 Aligned_cols=34 Identities=15% Similarity=0.060 Sum_probs=22.7
Q ss_pred eEeCCCCEEe-eeEECCCeEEcCCcccCccccccc
Q 014953 380 VGIGENTKIK-YEQLKPICHIVETKYDSSTISRFS 413 (415)
Q Consensus 380 ~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~ 413 (415)
|-||.|+.|- +..||+++.|++++.+.+-+.+++
T Consensus 131 vwIG~~a~IlpGV~IG~gavigagsVVtkdvp~~~ 165 (190)
T COG0110 131 VWIGAGAVILPGVTIGEGAVIGAGSVVTKDVPPYG 165 (190)
T ss_pred eEEcCccEECCCEEECCCcEEeeCCEEeCccCCCe
Confidence 5666666665 667777777777777776666654
|
|
| >cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0035 Score=52.22 Aligned_cols=15 Identities=13% Similarity=0.284 Sum_probs=7.2
Q ss_pred eEEccCcEECCCcEE
Q 014953 338 SVVGIRSRINANVHL 352 (415)
Q Consensus 338 svig~~~~ig~~~~i 352 (415)
++||++|.||.++.|
T Consensus 74 ~~Ig~~~~Ig~~~~i 88 (145)
T cd03349 74 VIIGNDVWIGHGATI 88 (145)
T ss_pred cEECCCCEECCCCEE
Confidence 444555555544444
|
Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. |
| >PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0022 Score=38.80 Aligned_cols=22 Identities=18% Similarity=0.181 Sum_probs=11.1
Q ss_pred eEEccCcEECCCcEEeecEEeCC
Q 014953 338 SVVGIRSRINANVHLKDTMMLGA 360 (415)
Q Consensus 338 svig~~~~ig~~~~i~~sii~~~ 360 (415)
..||++|.||+++.| +..|+++
T Consensus 2 v~IG~~~~ig~~~~i-gi~igd~ 23 (34)
T PF14602_consen 2 VTIGDNCFIGANSTI-GITIGDG 23 (34)
T ss_dssp EEE-TTEEE-TT-EE-TSEE-TT
T ss_pred eEECCCEEECccccc-CCEEcCC
Confidence 467777777777776 3444444
|
... |
| >KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.00055 Score=55.28 Aligned_cols=78 Identities=13% Similarity=0.211 Sum_probs=43.3
Q ss_pred cceECCCCEEcc-eEEee--------------eEEccCcEECCCcEEeecEEeCCccccchhHHHh--hhhCCCcceEeC
Q 014953 321 DSIISHGSFITS-SFIEH--------------SVVGIRSRINANVHLKDTMMLGADFYETDAEVAS--LLAEGRVPVGIG 383 (415)
Q Consensus 321 ~~~ig~~~~I~~-~~i~~--------------svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~--~~~~~~~~~~Ig 383 (415)
.-+||+||.|++ +.|.| -+||.+-...-||...-.-++++.++++++.+.. .+..| |.||
T Consensus 47 PI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFeVgc~s~A~kvGd~NVieskayvg~gv~vssg---C~vG 123 (190)
T KOG4042|consen 47 PIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFEVGCKSSAKKVGDRNVIESKAYVGDGVSVSSG---CSVG 123 (190)
T ss_pred CEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEEeechhhhhhhcCcceEeeeeEecCCcEEcCC---ceec
Confidence 567899999874 55533 4666666555566666666666666666554431 22333 5555
Q ss_pred CCCEEe-eeEECCCeEEcC
Q 014953 384 ENTKIK-YEQLKPICHIVE 401 (415)
Q Consensus 384 ~~~~i~-~~~i~~~~~i~~ 401 (415)
..|.+. .-.+-++..|..
T Consensus 124 A~c~v~~~q~lpent~vYg 142 (190)
T KOG4042|consen 124 AKCTVFSHQNLPENTSVYG 142 (190)
T ss_pred cceEEecccccCCcceEEc
Confidence 555554 333444444433
|
|
| >KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.002 Score=51.64 Aligned_cols=25 Identities=32% Similarity=0.493 Sum_probs=12.4
Q ss_pred eEeCCCCEEe-eeEECCCeEEcCCcc
Q 014953 380 VGIGENTKIK-YEQLKPICHIVETKY 404 (415)
Q Consensus 380 ~~Ig~~~~i~-~~~i~~~~~i~~~~~ 404 (415)
+.+|.||+|. +|++.+-++|-+++.
T Consensus 108 Vh~GknaviGrrCVlkdCc~ild~tV 133 (184)
T KOG3121|consen 108 VHLGKNAVIGRRCVLKDCCRILDDTV 133 (184)
T ss_pred eEeccceeEcCceEhhhheeccCCcc
Confidence 4455555554 455555555555443
|
|
| >KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0033 Score=54.57 Aligned_cols=31 Identities=16% Similarity=0.051 Sum_probs=19.7
Q ss_pred eEeCCCCEEe-eeEECCCeEEcCCcccCcccc
Q 014953 380 VGIGENTKIK-YEQLKPICHIVETKYDSSTIS 410 (415)
Q Consensus 380 ~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~ 410 (415)
|-||.++.|- |..||+|++|++|+.+-+-+-
T Consensus 207 vliGaGvtILgnV~IGegavIaAGsvV~kDVP 238 (269)
T KOG4750|consen 207 VLIGAGVTILGNVTIGEGAVIAAGSVVLKDVP 238 (269)
T ss_pred eEEccccEEeCCeeECCCcEEeccceEEeccC
Confidence 6666666654 667777777777766555443
|
|
| >KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.23 Score=47.53 Aligned_cols=212 Identities=15% Similarity=0.234 Sum_probs=107.3
Q ss_pred cceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhc----cCCc-EEEEEcccC-hhHHHHHHHhhccCC
Q 014953 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCIN----SGIN-KVYILTQYN-SASLNRHLARAYNYG 80 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~----~gi~-~I~vv~~~~-~~~i~~~l~~~~~~~ 80 (415)
.++..+=|-||.|+-|+ ...||++++|-+-...++-++.+... .+++ ..++-.++. .++..+.+.++..
T Consensus 102 ~KLavlKLNGGlGttmG---c~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~dVPlvLMNSfnTdedT~kil~ky~~-- 176 (498)
T KOG2638|consen 102 NKLAVLKLNGGLGTTMG---CKGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVDVPLVLMNSFNTDEDTQKILKKYAG-- 176 (498)
T ss_pred hheEEEEecCCcCCccc---cCCCceeEEEcCCCchhHHHHHHHHHHHhhcCCCCCEEEecccccchHHHHHHHHhcC--
Confidence 45556778999999998 88999999997654777766554443 2343 234444444 4566666665431
Q ss_pred CCccc---CC-ceE-----EEecCccCCCC-CCCccc-cchHHHHHHhh--hhhcCCCCCCcCeEEEEcCCeecc-cChH
Q 014953 81 SGVTF---GD-GCV-----EVLAATQTPGE-AGKRWF-QGTADAVRQFH--WLFEDPRNKVIEDVLILSGDHLYR-MDYM 146 (415)
Q Consensus 81 ~~~~~---~~-~~v-----~i~~~~~~~~~-~~~~~~-~Gt~~al~~~~--~~i~~~~~~~~~~~lv~~gD~i~~-~~l~ 146 (415)
...++ .. .+- +.++......+ ....|| .|.|+-..... ..++..-..+.+.++|.+.|.+.. .||
T Consensus 177 ~kv~i~TF~QS~~PRi~~etlLPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDNLGAtvDL- 255 (498)
T KOG2638|consen 177 SKVDIKTFNQSKYPRIDKETLLPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDNLGATVDL- 255 (498)
T ss_pred CceeEEEeccccCCccccccccCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhCCceEEEEeccccccceeeH-
Confidence 11111 10 000 11222111111 113443 46665433221 111111112468999999999765 444
Q ss_pred HHHHHHHHcCCcEEEEEEEcCCCcCCcccEEEECCCCCeEE--EEEcCCcccccccccccccccccccccccccceeeee
Q 014953 147 DFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLS--FSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMG 224 (415)
Q Consensus 147 ~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~v~~--~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 224 (415)
.++++....+.+..|=+++..... ..-|.+. +-+|++.. +..-|..... . +. . .......++.
T Consensus 256 ~ILn~~i~~~~ey~MEvTdKT~aD-vKgGtLi-~y~G~lrlLEiaQVP~ehv~-e------Fk-----S-~kkFkifNTN 320 (498)
T KOG2638|consen 256 NILNHVINNNIEYLMEVTDKTRAD-VKGGTLI-QYEGKLRLLEIAQVPKEHVD-E------FK-----S-IKKFKIFNTN 320 (498)
T ss_pred HHHHHHhcCCCceEEEecccchhh-cccceEE-eecCEEEEEEeccCChhHhh-h------hc-----c-ceeEEEeccC
Confidence 467777777777777665544321 1223333 23455443 3333332110 0 00 0 0012345566
Q ss_pred EEEEeHHHHHHHHhh
Q 014953 225 VYLFKKEILLNLLRW 239 (415)
Q Consensus 225 iyi~~~~~l~~~l~~ 239 (415)
--+++-..+++++++
T Consensus 321 NlWinLkavKrlve~ 335 (498)
T KOG2638|consen 321 NLWINLKAVKKLVEE 335 (498)
T ss_pred CeEEehHHHHHHhhc
Confidence 666777777777765
|
|
| >COG4801 Predicted acyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0074 Score=52.73 Aligned_cols=73 Identities=16% Similarity=0.134 Sum_probs=37.7
Q ss_pred CccccceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEe-e----
Q 014953 317 SKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-Y---- 390 (415)
Q Consensus 317 ~~i~~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~---- 390 (415)
+.++-.++|+....+ ++.|...+++.+|.|+.+|++.+-++.++. +.||+++.|. .
T Consensus 29 S~l~~~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~d------------------ayiGE~~sI~gkl~v~ 90 (277)
T COG4801 29 SMLKYGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVEND------------------AYIGEFSSIKGKLTVI 90 (277)
T ss_pred ceeeeeeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCc------------------eEEeccceeeeeEEEe
Confidence 333333444444444 344445555666666666666665555554 6666666655 2
Q ss_pred --eEECCCeEEcCCcccCc
Q 014953 391 --EQLKPICHIVETKYDSS 407 (415)
Q Consensus 391 --~~i~~~~~i~~~~~~~~ 407 (415)
.-||.++.|..+-..+.
T Consensus 91 gdLdig~dV~Ieggfva~g 109 (277)
T COG4801 91 GDLDIGADVIIEGGFVAKG 109 (277)
T ss_pred cccccccceEEecCeeecc
Confidence 22344555555544443
|
|
| >COG4801 Predicted acyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0092 Score=52.13 Aligned_cols=61 Identities=20% Similarity=0.163 Sum_probs=49.1
Q ss_pred cceECCCCEEcceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEe-eeEECCCeEE
Q 014953 321 DSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-YEQLKPICHI 399 (415)
Q Consensus 321 ~~~ig~~~~I~~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i 399 (415)
+.+||+|+.+. ..++++.+.+|++++|.+.++.++ +.|+.+|.+. |.++..++.|
T Consensus 22 dViIG~nS~l~-----~~V~g~~iivge~v~i~Gdiva~d-------------------iridmw~kv~gNV~ve~dayi 77 (277)
T COG4801 22 DVIIGKNSMLK-----YGVVGEEIIVGERVRIYGDIVAKD-------------------IRIDMWCKVTGNVIVENDAYI 77 (277)
T ss_pred cEEEcccceee-----eeeeeeeEEeccCcEEeeeEEecc-------------------eeeeeeeEeeccEEEcCceEE
Confidence 55566655554 579999999999999999999988 8888888887 8888888888
Q ss_pred cCCccc
Q 014953 400 VETKYD 405 (415)
Q Consensus 400 ~~~~~~ 405 (415)
|+.+..
T Consensus 78 GE~~sI 83 (277)
T COG4801 78 GEFSSI 83 (277)
T ss_pred ecccee
Confidence 887753
|
|
| >KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.01 Score=51.64 Aligned_cols=13 Identities=31% Similarity=0.317 Sum_probs=8.3
Q ss_pred eEEccCcEECCCc
Q 014953 338 SVVGIRSRINANV 350 (415)
Q Consensus 338 svig~~~~ig~~~ 350 (415)
-.||+||.||.|+
T Consensus 201 P~Igd~vliGaGv 213 (269)
T KOG4750|consen 201 PKIGDNVLIGAGV 213 (269)
T ss_pred CcccCCeEEcccc
Confidence 4667777777553
|
|
| >TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.021 Score=50.05 Aligned_cols=85 Identities=16% Similarity=0.176 Sum_probs=56.9
Q ss_pred eeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCceEEEecCccCCCCCCCccccchHHHHHHhhhh
Q 014953 41 RLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWL 120 (415)
Q Consensus 41 pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~ 120 (415)
||++|+++.+...+++++++++++ +.+.+++.. ++ +.++.... .|.+.+++.++..
T Consensus 31 ~ll~~~l~~l~~~~~~~vvvv~~~--~~~~~~~~~---------~~---v~~i~~~~----------~G~~~si~~al~~ 86 (195)
T TIGR03552 31 AMLRDVITALRGAGAGAVLVVSPD--PALLEAARN---------LG---APVLRDPG----------PGLNNALNAALAE 86 (195)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCC--HHHHHHHHh---------cC---CEEEecCC----------CCHHHHHHHHHHH
Confidence 899999999999888888888864 344444321 11 22332111 2899999999877
Q ss_pred hcCCCCCCcCeEEEEcCCe-eccc-ChHHHHHHHH
Q 014953 121 FEDPRNKVIEDVLILSGDH-LYRM-DYMDFVQNHR 153 (415)
Q Consensus 121 i~~~~~~~~~~~lv~~gD~-i~~~-~l~~~l~~h~ 153 (415)
+.. ..+.++++.||+ +... .+.++++.+.
T Consensus 87 ~~~----~~~~vlv~~~D~P~l~~~~i~~l~~~~~ 117 (195)
T TIGR03552 87 ARE----PGGAVLILMADLPLLTPRELKRLLAAAT 117 (195)
T ss_pred hhc----cCCeEEEEeCCCCCCCHHHHHHHHHhcc
Confidence 642 135899999999 4444 4778877653
|
Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis. |
| >cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.13 Score=41.77 Aligned_cols=99 Identities=15% Similarity=0.045 Sum_probs=66.7
Q ss_pred ceeeCCcceeehhehhhhhccC--CcEEEEEcccChhHHHHHHHhhccCCCCcccCCceEEEecCccCCCCCCCccccch
Q 014953 33 AVPIGGAYRLIDVPMSNCINSG--INKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGT 110 (415)
Q Consensus 33 llpv~g~~pli~~~l~~l~~~g--i~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~Gt 110 (415)
++|..|.++++.++++++.+.+ ..+++++.+...+...+.+...... ... +....... ..|.
T Consensus 2 ii~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~---------~~g~ 65 (156)
T cd00761 2 IIPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKK------DPR-VIRVINEE---------NQGL 65 (156)
T ss_pred EEeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhc------CCC-eEEEEecC---------CCCh
Confidence 4566666689999999999887 7789998888777666666543211 001 11221111 2588
Q ss_pred HHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHHH
Q 014953 111 ADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHR 153 (415)
Q Consensus 111 ~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h~ 153 (415)
+.++..++.... .+.++++.+|.++..+ +..++..+.
T Consensus 66 ~~~~~~~~~~~~------~d~v~~~d~D~~~~~~~~~~~~~~~~ 103 (156)
T cd00761 66 AAARNAGLKAAR------GEYILFLDADDLLLPDWLERLVAELL 103 (156)
T ss_pred HHHHHHHHHHhc------CCEEEEECCCCccCccHHHHHHHHHh
Confidence 999988887764 5889999999988887 455434433
|
Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als |
| >COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.069 Score=46.52 Aligned_cols=80 Identities=23% Similarity=0.148 Sum_probs=43.4
Q ss_pred cceECCCCEEc-ceEE---eeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEe-eeEECC
Q 014953 321 DSIISHGSFIT-SSFI---EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-YEQLKP 395 (415)
Q Consensus 321 ~~~ig~~~~I~-~~~i---~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~~i~~ 395 (415)
+..+|.+|.++ ++.+ .+..||+++.+++++.|... .|...............-|++||++|.|. +++|.+
T Consensus 67 ~~~iG~~~~i~~~~~~~~~~~i~ig~~~~i~~~v~i~~~-----~h~~~~~~~~~~~~~~~~~v~IG~~vwIG~~a~Ilp 141 (190)
T COG0110 67 NLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTN-----SHPGDFVTANIGALVGAGPVTIGEDVWIGAGAVILP 141 (190)
T ss_pred ceEECCeeEEcCCcEEEecCCeEECCCceECCCcEEecC-----CCCCChhhcccCCceecCCeEECCCeEEcCccEECC
Confidence 44556666665 3332 23446666666655555442 11111111111002222258889988888 888888
Q ss_pred CeEEcCCccc
Q 014953 396 ICHIVETKYD 405 (415)
Q Consensus 396 ~~~i~~~~~~ 405 (415)
+++||+++..
T Consensus 142 GV~IG~gavi 151 (190)
T COG0110 142 GVTIGEGAVI 151 (190)
T ss_pred CEEECCCcEE
Confidence 8888888853
|
|
| >PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.62 Score=38.59 Aligned_cols=111 Identities=12% Similarity=0.151 Sum_probs=70.9
Q ss_pred ceeeCCcceeehhehhhhhcc--CCcEEEEEcccChhHHHHHHHhhccCCCCcccCCceEEEecCccCCCCCCCccccch
Q 014953 33 AVPIGGAYRLIDVPMSNCINS--GINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGT 110 (415)
Q Consensus 33 llpv~g~~pli~~~l~~l~~~--gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~Gt 110 (415)
.+|.-|....|..+|+.+.++ ...+|+|+-+...+...+.+.+... ....+.++...+. .|.
T Consensus 3 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~-------~~~~i~~i~~~~n---------~g~ 66 (169)
T PF00535_consen 3 VIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAE-------SDPNIRYIRNPEN---------LGF 66 (169)
T ss_dssp EEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHC-------CSTTEEEEEHCCC---------SHH
T ss_pred EEEeeCCHHHHHHHHHHHhhccCCCEEEEEeccccccccccccccccc-------ccccccccccccc---------ccc
Confidence 456667656788888888876 4457777766554444454444321 0112455543333 488
Q ss_pred HHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHHHHcCCcEEEEEEE
Q 014953 111 ADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITISCLP 165 (415)
Q Consensus 111 ~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h~~~~~~~ti~~~~ 165 (415)
+.+...+..... .+.++++..|.+...+ +..+++.+.+.+.++.+....
T Consensus 67 ~~~~n~~~~~a~------~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 116 (169)
T PF00535_consen 67 SAARNRGIKHAK------GEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSVI 116 (169)
T ss_dssp HHHHHHHHHH--------SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEEE
T ss_pred cccccccccccc------eeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 899988888775 4799999999988888 788999888877765554443
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A .... |
| >PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase [] | Back alignment and domain information |
|---|
Probab=92.18 E-value=0.24 Score=48.85 Aligned_cols=47 Identities=17% Similarity=0.194 Sum_probs=40.6
Q ss_pred ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEeeeEECCCe
Q 014953 332 SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKYEQLKPIC 397 (415)
Q Consensus 332 ~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~~i~~~~ 397 (415)
++.|.+|+|..++.||+++.|.+|.+.++ +.||+||+|.++-+....
T Consensus 279 ~~~VinSil~~~~~vg~~svIe~s~l~~~-------------------~~IG~~cIisGv~~~~~~ 325 (414)
T PF07959_consen 279 SSCVINSILEGGVSVGPGSVIEHSHLGGP-------------------WSIGSNCIISGVDINSWS 325 (414)
T ss_pred CeeEEEeEecCCceECCCCEEEeeecCCC-------------------CEECCCCEEECCcccccc
Confidence 46667899999999999999999999999 899999999988555443
|
; GO: 0016772 transferase activity, transferring phosphorus-containing groups |
| >cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
Probab=88.71 E-value=4.7 Score=33.28 Aligned_cols=99 Identities=10% Similarity=0.084 Sum_probs=64.3
Q ss_pred ceeeCCcceeehhehhhhhccC--CcEEEEEcccChhHHHHHHHhhccCCCCcccCCceEEEecCccCCCCCCCccccch
Q 014953 33 AVPIGGAYRLIDVPMSNCINSG--INKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGT 110 (415)
Q Consensus 33 llpv~g~~pli~~~l~~l~~~g--i~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~Gt 110 (415)
++|.-|++.++..+++.+.+.. ..+++|+.....+...+.+.+... .+.++..... .|.
T Consensus 2 ii~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~~----------~~~~~~~~~~---------~g~ 62 (166)
T cd04186 2 IIVNYNSLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELFP----------EVRLIRNGEN---------LGF 62 (166)
T ss_pred EEEecCCHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhCC----------CeEEEecCCC---------cCh
Confidence 3566666578888888887753 457777766555555555543321 1333322222 488
Q ss_pred HHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHHHHcC
Q 014953 111 ADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSG 156 (415)
Q Consensus 111 ~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h~~~~ 156 (415)
+.++..++...+ .+.++++..|.....+ +..+++.+.+.+
T Consensus 63 ~~a~n~~~~~~~------~~~i~~~D~D~~~~~~~l~~~~~~~~~~~ 103 (166)
T cd04186 63 GAGNNQGIREAK------GDYVLLLNPDTVVEPGALLELLDAAEQDP 103 (166)
T ss_pred HHHhhHHHhhCC------CCEEEEECCCcEECccHHHHHHHHHHhCC
Confidence 899988887764 5889999999987777 677777655544
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan | Back alignment and domain information |
|---|
Probab=88.32 E-value=3.6 Score=36.64 Aligned_cols=97 Identities=11% Similarity=0.202 Sum_probs=63.0
Q ss_pred ceeeCCcc-eeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCceEEEecCccCCCCCCCccccchH
Q 014953 33 AVPIGGAY-RLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTA 111 (415)
Q Consensus 33 llpv~g~~-pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~Gt~ 111 (415)
++|.-|.. +.+..+|+.+.+....+|+||.....+...+.+...... ..+.++... . .|-.
T Consensus 5 vIp~~ne~~~~l~~~l~sl~~q~~~eiivvdd~s~d~~~~~l~~~~~~--------~~~~v~~~~-~---------~g~~ 66 (235)
T cd06434 5 IIPVYDEDPDVFRECLRSILRQKPLEIIVVTDGDDEPYLSILSQTVKY--------GGIFVITVP-H---------PGKR 66 (235)
T ss_pred EEeecCCChHHHHHHHHHHHhCCCCEEEEEeCCCChHHHHHHHhhccC--------CcEEEEecC-C---------CChH
Confidence 45666664 678888888877655688888776666555554322111 113333221 1 3777
Q ss_pred HHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHHH
Q 014953 112 DAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHR 153 (415)
Q Consensus 112 ~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h~ 153 (415)
.++..++...+ .+.++++.+|.....+ +..+++.+.
T Consensus 67 ~a~n~g~~~a~------~d~v~~lD~D~~~~~~~l~~l~~~~~ 103 (235)
T cd06434 67 RALAEGIRHVT------TDIVVLLDSDTVWPPNALPEMLKPFE 103 (235)
T ss_pred HHHHHHHHHhC------CCEEEEECCCceeChhHHHHHHHhcc
Confidence 88877766554 5899999999988887 677777665
|
Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate. |
| >PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=86.55 E-value=1.1 Score=48.65 Aligned_cols=53 Identities=8% Similarity=0.016 Sum_probs=43.5
Q ss_pred eEEeeeEEccCcEECCCcE-EeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEeeeE-ECCCeEEcCCcc
Q 014953 333 SFIEHSVVGIRSRINANVH-LKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKYEQ-LKPICHIVETKY 404 (415)
Q Consensus 333 ~~i~~svig~~~~ig~~~~-i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~~-i~~~~~i~~~~~ 404 (415)
+++.||++..++.+++++. |++|.|.++ +.||.+|+|.++. ..-+.+|++++-
T Consensus 332 ~~v~ns~~~~~~s~~~~s~~vE~s~l~~~-------------------~~ig~~~Iisgv~~~~~~~~vP~~~c 386 (974)
T PRK13412 332 MFVQNAVLSGKLTAENATLWIENSHVGEG-------------------WKLASRSIITGVPENSWNLDLPEGVC 386 (974)
T ss_pred eEEEeeEecCCcccCCCeEEEEeeEecCC-------------------eEEcCCcEEecccccccceecCCCcE
Confidence 5678999999999999855 888999999 8999999998875 333577777763
|
|
| >cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily | Back alignment and domain information |
|---|
Probab=86.40 E-value=5 Score=34.02 Aligned_cols=108 Identities=13% Similarity=0.090 Sum_probs=63.7
Q ss_pred eeeCCcceeehhehhhhhcc----CCcEEEEEcccChhHHHHHHHhhccCCCCcccCCceEEEecCccCCCCCCCccccc
Q 014953 34 VPIGGAYRLIDVPMSNCINS----GINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQG 109 (415)
Q Consensus 34 lpv~g~~pli~~~l~~l~~~----gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~G 109 (415)
+|..+....+..+|+.+.+. ...+|+|+-+...+...+.+.... . ++. .+.++..... .|
T Consensus 3 i~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~---~--~~~--~~~~~~~~~n---------~G 66 (185)
T cd04179 3 IPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELA---A--RVP--RVRVIRLSRN---------FG 66 (185)
T ss_pred ecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHH---H--hCC--CeEEEEccCC---------CC
Confidence 45555434566677777765 356777776554444444333211 0 111 1233333332 47
Q ss_pred hHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHHHHcCCcEEEEE
Q 014953 110 TADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITISC 163 (415)
Q Consensus 110 t~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h~~~~~~~ti~~ 163 (415)
.+.++..+..... .+.++++.+|.....+ +.++++...+.+.++.+..
T Consensus 67 ~~~a~n~g~~~a~------gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 115 (185)
T cd04179 67 KGAAVRAGFKAAR------GDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGS 115 (185)
T ss_pred ccHHHHHHHHHhc------CCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEE
Confidence 8888888877654 4889999999977766 7888886555555554443
|
DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex |
| >cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan | Back alignment and domain information |
|---|
Probab=85.32 E-value=6.5 Score=35.15 Aligned_cols=107 Identities=8% Similarity=0.132 Sum_probs=63.9
Q ss_pred ceeeCCcceeehhehhhhhccCC----cEEEEEcccChhHHHHHHHhhccCCCCcccCCceEEEecCccCCCCCCCcccc
Q 014953 33 AVPIGGAYRLIDVPMSNCINSGI----NKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQ 108 (415)
Q Consensus 33 llpv~g~~pli~~~l~~l~~~gi----~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~ 108 (415)
++|.-|.++.+..+++.+.+... -+|+|+-+...+...+.+.... .. . ..+.++.... .
T Consensus 5 iip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~--~~---~--~~v~~i~~~~----------~ 67 (249)
T cd02525 5 IIPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYA--AK---D--PRIRLIDNPK----------R 67 (249)
T ss_pred EEEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHH--hc---C--CeEEEEeCCC----------C
Confidence 45666654677777888876543 3677776555554444443321 00 0 1134432211 2
Q ss_pred chHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHHHHcCCcEEEE
Q 014953 109 GTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITIS 162 (415)
Q Consensus 109 Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h~~~~~~~ti~ 162 (415)
|-+.++..+....+ .+.++++.+|.....+ +..+++.+.+.+..+...
T Consensus 68 ~~~~a~N~g~~~a~------~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~ 116 (249)
T cd02525 68 IQSAGLNIGIRNSR------GDIIIRVDAHAVYPKDYILELVEALKRTGADNVGG 116 (249)
T ss_pred CchHHHHHHHHHhC------CCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEec
Confidence 56677777766654 5899999999987776 788887666655554433
|
Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus. |
| >cd06423 CESA_like CESA_like is the cellulose synthase superfamily | Back alignment and domain information |
|---|
Probab=85.06 E-value=6.3 Score=32.44 Aligned_cols=102 Identities=15% Similarity=0.073 Sum_probs=60.4
Q ss_pred ceeeCCcceeehhehhhhhccC--CcEEEEEcccChhHHHHHHHhhccCCCCcccCCceEEEecCccCCCCCCCccccch
Q 014953 33 AVPIGGAYRLIDVPMSNCINSG--INKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGT 110 (415)
Q Consensus 33 llpv~g~~pli~~~l~~l~~~g--i~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~Gt 110 (415)
.+|.-|.+..|..+|+.+.+.. .-+++|+-....+...+.+.+..... . ..+.++..... .|.
T Consensus 2 iip~~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~~~-----~-~~~~~~~~~~~---------~g~ 66 (180)
T cd06423 2 IVPAYNEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAALY-----I-RRVLVVRDKEN---------GGK 66 (180)
T ss_pred eecccChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhccc-----c-ceEEEEEeccc---------CCc
Confidence 3566665467778888887764 34777776555444444443321100 0 01222222222 488
Q ss_pred HHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHHHHc
Q 014953 111 ADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQS 155 (415)
Q Consensus 111 ~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h~~~ 155 (415)
+.++..++.... .+.++++.+|.+...+ +..++..+.+.
T Consensus 67 ~~~~n~~~~~~~------~~~i~~~D~D~~~~~~~l~~~~~~~~~~ 106 (180)
T cd06423 67 AGALNAGLRHAK------GDIVVVLDADTILEPDALKRLVVPFFAD 106 (180)
T ss_pred hHHHHHHHHhcC------CCEEEEECCCCCcChHHHHHHHHHhccC
Confidence 888888877664 5889999999987776 67774555444
|
The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the |
| >cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily | Back alignment and domain information |
|---|
Probab=83.89 E-value=12 Score=33.62 Aligned_cols=109 Identities=14% Similarity=0.118 Sum_probs=65.6
Q ss_pred cccccCCcc--cceeeCCcceeehhehhhhhccCC----cEEEEEcccChhHHHHHHHhhccCCCCcccCCceEEEecCc
Q 014953 23 YPLTKQRAK--PAVPIGGAYRLIDVPMSNCINSGI----NKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAAT 96 (415)
Q Consensus 23 ~plt~~~pK--~llpv~g~~pli~~~l~~l~~~gi----~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~ 96 (415)
.+-....|+ .++|.-|....|..+|+.+.+... -+++|+.....+...+.+.+.. .. .+.++...
T Consensus 22 ~~~~~~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~---~~------~v~~i~~~ 92 (251)
T cd06439 22 LPDPAYLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYA---DK------GVKLLRFP 92 (251)
T ss_pred CCCCCCCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHh---hC------cEEEEEcC
Confidence 334444555 567777764566777777765432 2577776555544444443211 10 13333322
Q ss_pred cCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHHHHc
Q 014953 97 QTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQS 155 (415)
Q Consensus 97 ~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h~~~ 155 (415)
.. .|.+.++..+..... .+.++++.+|.+...+ +.++++...+.
T Consensus 93 ~~---------~g~~~a~n~gi~~a~------~d~i~~lD~D~~~~~~~l~~l~~~~~~~ 137 (251)
T cd06439 93 ER---------RGKAAALNRALALAT------GEIVVFTDANALLDPDALRLLVRHFADP 137 (251)
T ss_pred CC---------CChHHHHHHHHHHcC------CCEEEEEccccCcCHHHHHHHHHHhcCC
Confidence 22 478888888877664 4899999999988776 78888776433
|
This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. |
| >KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=82.56 E-value=0.85 Score=44.72 Aligned_cols=67 Identities=28% Similarity=0.418 Sum_probs=45.8
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeCCc--ceeehhehhhhhc----------cCCc-EEEEEcccC-hhHHHH
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGA--YRLIDVPMSNCIN----------SGIN-KVYILTQYN-SASLNR 71 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~--~pli~~~l~~l~~----------~gi~-~I~vv~~~~-~~~i~~ 71 (415)
..+..++++|||+|||+. ...||.+.|++-. ..++++..+.+.. .|.+ ..+|-++.. .+.-.+
T Consensus 95 ~~~~a~~llaGgqgtRLg---~~~pkg~~~~G~~~~~slf~~qae~il~lq~~a~~~~~~~~~I~w~ImtS~~T~e~T~~ 171 (477)
T KOG2388|consen 95 EGKVAVVLLAGGQGTRLG---SSGPKGCYPIGLPSGKSLFQIQAERILKLQELASMAVSDGVDIPWYIMTSAFTHEATLE 171 (477)
T ss_pred cCcceEEEeccCceeeec---cCCCcceeecCCccccchhhhhHHHHHHHHHHHhhhhccCCceEEEEecCCCccHHhHh
Confidence 356789999999999998 7899999999853 1577777665542 1222 334445433 466677
Q ss_pred HHHh
Q 014953 72 HLAR 75 (415)
Q Consensus 72 ~l~~ 75 (415)
|+..
T Consensus 172 ~f~~ 175 (477)
T KOG2388|consen 172 YFES 175 (477)
T ss_pred HHhh
Confidence 7764
|
|
| >cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1 | Back alignment and domain information |
|---|
Probab=80.91 E-value=15 Score=32.23 Aligned_cols=108 Identities=9% Similarity=0.095 Sum_probs=62.2
Q ss_pred ceeeCCcceeehhehhhhhccC---CcEEEEEcccChhHHHHHHHhhccCCCCcccCCceEEEecCccCCCCCCCccccc
Q 014953 33 AVPIGGAYRLIDVPMSNCINSG---INKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQG 109 (415)
Q Consensus 33 llpv~g~~pli~~~l~~l~~~g---i~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~G 109 (415)
.+|.-|....|..+++.+.+.- .-+|+||-....+...+.+..... . . ..+.++..... .|
T Consensus 2 iIp~yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~~-~----~--~~i~~~~~~~n---------~G 65 (224)
T cd06442 2 IIPTYNERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELAK-E----Y--PRVRLIVRPGK---------RG 65 (224)
T ss_pred eEeccchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHHH-h----C--CceEEEecCCC---------CC
Confidence 3566665456677777776532 246777754433333333322110 0 0 01333332222 48
Q ss_pred hHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHHHHcCCcEEEE
Q 014953 110 TADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITIS 162 (415)
Q Consensus 110 t~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h~~~~~~~ti~ 162 (415)
-+.++..++.... .+.++++.+|.....+ +..+++.....+.++...
T Consensus 66 ~~~a~n~g~~~a~------gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 113 (224)
T cd06442 66 LGSAYIEGFKAAR------GDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIG 113 (224)
T ss_pred hHHHHHHHHHHcC------CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 8899988877654 4788999999977766 678887755555554443
|
Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, |
| >cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation | Back alignment and domain information |
|---|
Probab=80.84 E-value=10 Score=33.13 Aligned_cols=50 Identities=22% Similarity=0.244 Sum_probs=37.7
Q ss_pred cchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHHHHcCCcEEEEE
Q 014953 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITISC 163 (415)
Q Consensus 108 ~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h~~~~~~~ti~~ 163 (415)
.|.+.++..++.... .+.++++.+|...+.+ +..+++...+.+.++++..
T Consensus 68 ~G~~~a~~~g~~~a~------gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 118 (211)
T cd04188 68 RGKGGAVRAGMLAAR------GDYILFADADLATPFEELEKLEEALKTSGYDIAIGS 118 (211)
T ss_pred CCcHHHHHHHHHHhc------CCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEE
Confidence 488999998887765 4899999999977766 7888877555666555543
|
UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 415 | ||||
| 1yp2_A | 451 | Crystal Structure Of Potato Tuber Adp-Glucose Pyrop | 1e-122 | ||
| 3brk_X | 420 | Crystal Structure Of Adp-Glucose Pyrophosphorylase | 3e-45 | ||
| 3hl3_A | 269 | 2.76 Angstrom Crystal Structure Of A Putative Gluco | 3e-06 | ||
| 1lvw_A | 295 | Crystal Structure Of Glucose-1-phosphate Thymidylyl | 6e-06 | ||
| 1tzf_A | 259 | X-Ray Crystal Structure Of Alpha-D-Glucose-1-Phosph | 1e-04 | ||
| 1fxo_A | 293 | The Structural Basis Of The Catalytic Mechanism And | 3e-04 | ||
| 4arw_A | 302 | Pseudomonas Aeruginosa Rmla In Complex With Alloste | 3e-04 | ||
| 4b2x_A | 303 | Pseudomonas Aeruginosa Rmla In Complex With Alloste | 3e-04 | ||
| 3pkq_A | 292 | Q83d Variant Of S. Enterica Rmla With Dgtp Length = | 6e-04 |
| >pdb|1YP2|A Chain A, Crystal Structure Of Potato Tuber Adp-Glucose Pyrophosphorylase Length = 451 | Back alignment and structure |
|
| >pdb|3BRK|X Chain X, Crystal Structure Of Adp-Glucose Pyrophosphorylase From Agrobacterium Tumefaciens Length = 420 | Back alignment and structure |
|
| >pdb|3HL3|A Chain A, 2.76 Angstrom Crystal Structure Of A Putative Glucose-1-Phosphate Thymidylyltransferase From Bacillus Anthracis In Complex With A Sucrose. Length = 269 | Back alignment and structure |
|
| >pdb|1LVW|A Chain A, Crystal Structure Of Glucose-1-phosphate Thymidylyltransferase, Rmla, Complex With Dtdp Length = 295 | Back alignment and structure |
|
| >pdb|1TZF|A Chain A, X-Ray Crystal Structure Of Alpha-D-Glucose-1-Phosphate Cytidylyltransferase From Salmonella Typhi Length = 259 | Back alignment and structure |
|
| >pdb|1FXO|A Chain A, The Structural Basis Of The Catalytic Mechanism And Regulation Of Glucose-1-Phosphate Thymidylyltransferase (Rmla). Tmp Complex. Length = 293 | Back alignment and structure |
|
| >pdb|4ARW|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric Inhibitor Length = 302 | Back alignment and structure |
|
| >pdb|4B2X|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric Inhibitor Length = 303 | Back alignment and structure |
|
| >pdb|3PKQ|A Chain A, Q83d Variant Of S. Enterica Rmla With Dgtp Length = 292 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 415 | |||
| 1yp2_A | 451 | Glucose-1-phosphate adenylyltransferase small subu | 0.0 | |
| 3brk_X | 420 | Glucose-1-phosphate adenylyltransferase; ADP-gluco | 1e-178 | |
| 2xme_A | 232 | CTP-inositol-1-phosphate cytidylyltransferase; CDP | 4e-23 | |
| 1jyk_A | 254 | LICC protein, CTP:phosphocholine cytidylytransfera | 2e-19 | |
| 2ggo_A | 401 | 401AA long hypothetical glucose-1-phosphate thymid | 2e-13 | |
| 3rsb_A | 196 | Adenosylcobinamide-phosphate guanylyltransferase; | 1e-11 | |
| 1tzf_A | 259 | Glucose-1-phosphate cytidylyltransferase; nucleoti | 6e-10 | |
| 3pnn_A | 303 | Conserved domain protein; structural genomics, PSI | 1e-06 | |
| 4evw_A | 255 | Nucleoside-diphosphate-sugar pyrophosphorylase; st | 4e-05 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-04 | |
| 1lvw_A | 295 | Glucose-1-phosphate thymidylyltransferase; protein | 5e-04 | |
| 1fxo_A | 293 | Glucose-1-phosphate thymidylyltransferase; rhamnos | 5e-04 | |
| 4ecm_A | 269 | Glucose-1-phosphate thymidylyltransferase; HET: DA | 5e-04 | |
| 1mc3_A | 296 | Glucose-1-phosphate thymidylyltransferase; glucose | 5e-04 | |
| 2icy_A | 469 | Probable UTP-glucose-1-phosphate uridylyltransfera | 9e-04 |
| >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* Length = 451 | Back alignment and structure |
|---|
Score = 609 bits (1573), Expect = 0.0
Identities = 223/391 (57%), Positives = 298/391 (76%), Gaps = 7/391 (1%)
Query: 1 MEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYI 60
++ +R+V +ILGGGAGTRLYPLTK+RAKPAVP+G YRLID+P+SNC+NS I+K+Y+
Sbjct: 13 LDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYV 72
Query: 61 LTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWL 120
LTQ+NSASLNRHL+RAY G +G VEVLAA Q+P WFQGTADAVRQ+ WL
Sbjct: 73 LTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPE--NPDWFQGTADAVRQYLWL 130
Query: 121 FEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN 180
FE+ + + LIL+GDHLYRMDY F+Q HR++ ADIT++ LPMD+ RA+ FGLMKI+
Sbjct: 131 FEEHT---VLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKID 187
Query: 181 NEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR 240
EGR++ F+EKP+G+ L+AM VDTT+LGL + A+E P+IASMG+Y+ K+++LNLLR +
Sbjct: 188 EEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDK 247
Query: 241 FPTANDFGSEIIPASANEQF-LKAYLFNDYWEDIGTIRSFFEANLALTAHP-PMFSFYDA 298
FP ANDFGSE+IP + + ++AYL++ YWEDIGTI +F+ ANL +T P P FSFYD
Sbjct: 248 FPGANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDR 307
Query: 299 TKPIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMML 358
+ PIYT R LPPSK+ D+ + DS+I G I + I HSVVG+RS I+ ++D++++
Sbjct: 308 SAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLM 367
Query: 359 GADFYETDAEVASLLAEGRVPVGIGENTKIK 389
GAD+YETDA+ L A+G VP+GIG+N IK
Sbjct: 368 GADYYETDADRKLLAAKGSVPIGIGKNCHIK 398
|
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} Length = 420 | Back alignment and structure |
|---|
Score = 502 bits (1294), Expect = e-178
Identities = 129/407 (31%), Positives = 201/407 (49%), Gaps = 60/407 (14%)
Query: 3 KRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILT 62
+ AR A +L GG G+RL LT +RAKPAV GG R+ID +SN +NSGI ++ + T
Sbjct: 7 QPLARDAMAYVLAGGRGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNSGIRRIGVAT 66
Query: 63 QYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFE 122
QY + SL RHL R +++ + ++L A+Q E +W++GTADAV Q + E
Sbjct: 67 QYKAHSLIRHLQRGWDFFRP--ERNESFDILPASQRVSE--TQWYEGTADAVYQNIDIIE 122
Query: 123 DPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNE 182
E ++IL+GDH+Y+MDY +Q H SGAD+TI CL + A+ FG+M +N +
Sbjct: 123 PYA---PEYMVILAGDHIYKMDYEYMLQQHVDSGADVTIGCLEVPRMEATGFGVMHVNEK 179
Query: 183 GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP 242
++ F EKP D + E +ASMG+Y+F + L+ +R
Sbjct: 180 DEIIDFIEKP--ADPPGI------------PGNEGFALASMGIYVFHTKFLMEAVRRDAA 225
Query: 243 ---TANDFGSEIIPASANEQFLKAYLFND-----------YWEDIGTIRSFFEANLALTA 288
++ DFG +IIP A+ F D YW D+GTI ++++AN+ LT
Sbjct: 226 DPTSSRDFGKDIIPYIVEHGKAVAHRFADSCVRSDFEHEPYWRDVGTIDAYWQANIDLTD 285
Query: 289 HPPMFSFYDATKPIYTSRRNLPPSKIDDS------KIVDSIISHGSFITSSFIEHSVVGI 342
P YD + PI+T PP+K V S++S I+ + + S++
Sbjct: 286 VVPDLDIYDKSWPIWTYAEITPPAKFVHDDEDRRGSAVSSVVSGDCIISGAALNRSLLFT 345
Query: 343 RSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK 389
R N+ L++ ++L + V IG + ++
Sbjct: 346 GVRANSYSRLENAVVLPS-------------------VKIGRHAQLS 373
|
| >2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A* Length = 232 | Back alignment and structure |
|---|
Score = 96.1 bits (240), Expect = 4e-23
Identities = 41/277 (14%), Positives = 77/277 (27%), Gaps = 72/277 (25%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGG---AYRLIDVPMSNCINSGINKVYILTQYNSA 67
AVIL G GTRL + KP V +GG R + ++ +++ I+ +
Sbjct: 21 AVILAAGLGTRLGGVP----KPLVRVGGCEIILRTM-----KLLSPHVSEFIIVASRYAD 71
Query: 68 SLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNK 127
++ L + G V +G ++ ED
Sbjct: 72 DIDAFLK---DKGFNYKI------VRHDRPE---------KGNGYSLLVAKNHVEDR--- 110
Query: 128 VIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLS 187
++ GDH+Y F++ + I + +++ + GRV
Sbjct: 111 ----FILTMGDHVYS---QQFIEKAVRGEGVIAD--REPRFVDIGEATKIRVED-GRVAK 160
Query: 188 FSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDF 247
+ + D G ++ I D
Sbjct: 161 IGKDLREFDC-----------------------VDTGFFVLDDSI-FEHA----EKLRDR 192
Query: 248 GSEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEAN 283
+ + Y+ + W D+ T AN
Sbjct: 193 EEIPLSEIVKLARLPVTYVDGELWMDVDTKEDVRRAN 229
|
| >1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A* Length = 254 | Back alignment and structure |
|---|
Score = 86.3 bits (214), Expect = 2e-19
Identities = 32/280 (11%), Positives = 82/280 (29%), Gaps = 67/280 (23%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
A+IL G GTRL PLT+ K V + LI+ + GIN + I+ Y +
Sbjct: 28 AIILAAGLGTRLRPLTENTPKALVQVNQ-KPLIEYQIEFLKEKGINDIIIIVGYLKEQFD 86
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIE 130
+ +G V ++ + ++
Sbjct: 87 YLKEK---------YGVRLVFNDKYADY----------NNFYSLYLV-------KEELAN 120
Query: 131 DVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSE 190
+I + ++L++ + + + T + +D ++ + ++ +V
Sbjct: 121 SYVIDADNYLFKNMFRNDLTRS-------TYFSVYREDC--TNEWFLVYGDDYKVQDIIV 171
Query: 191 KPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEIL------LNLLRWRFPTA 244
K + ++ GV + ++
Sbjct: 172 DS--KAGRILS----------------------GVSFWDAPTAEKIVSFIDKAYVSGEFV 207
Query: 245 NDFGSEIIPASANEQFLKAYLFND-YWEDIGTIRSFFEAN 283
+ + ++ + E + +I +++ + +
Sbjct: 208 DLYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKLE 247
|
| >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* Length = 401 | Back alignment and structure |
|---|
Score = 70.7 bits (174), Expect = 2e-13
Identities = 57/366 (15%), Positives = 108/366 (29%), Gaps = 115/366 (31%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPM-----SNCINSGINKVYILTQYN 65
A IL G+G RL P+T R K VPI P+ GI + ++
Sbjct: 3 AFILAAGSGERLEPITHTRPKAFVPILSK------PLIEYQIEYLRKCGIRDITVIVSSK 56
Query: 66 SASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPR 125
+ + + V +GT A+
Sbjct: 57 NKEYFEKKLKEISI------------VTQKDD---------IKGTGAAILS--------- 86
Query: 126 NKVIEDVLILSGDHLY--RMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEG 183
K ++ LI+ GD + + + + I + + + D+G++ ++N+
Sbjct: 87 AKFNDEALIIYGDLFFSNEKEICNIITLKEN-----AIIGVKVSN--PKDYGVLVLDNQN 139
Query: 184 RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243
+ EKP + + + G+Y +I
Sbjct: 140 NLSKIIEKP----------EIP-------PSNL----INAGIYKLNSDIF---------- 168
Query: 244 ANDFGSEIIPA-SANEQF----------------LKAYLFNDYWEDIGTIRSFFEANLAL 286
+ S +E+ +K + YW DIG + + N
Sbjct: 169 ------TYLDKISISERGELELTDAINLMAKDHRVKVIEYEGYWMDIGKPWNIIDVN-KW 221
Query: 287 TAHPPMFSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRI 346
+FS + + + I++ D+ I G++I +G S I
Sbjct: 222 ALDNLVFSQNLGN--VEDNVKIKGKVIIEE----DAEIKSGTYIEGP----VYIGKGSEI 271
Query: 347 NANVHL 352
N +L
Sbjct: 272 GPNSYL 277
|
| >3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii} Length = 196 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 1e-11
Identities = 32/153 (20%), Positives = 55/153 (35%), Gaps = 31/153 (20%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
A+I+ GG GTR+ + KP + + G LID +S + S +N ++I T N+
Sbjct: 3 ALIMAGGKGTRMGGVE----KPLIKLCG-RCLIDYVVSPLLKSKVNNIFIATSPNTPKTK 57
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIE 130
++ AY + T G +G + + + F +P
Sbjct: 58 EYINSAYKDYKNIVV----------IDTSG-------KGYIEDLNECIGYFSEP------ 94
Query: 131 DVLILSGD--HLYRMDYMDFVQNHRQSGADITI 161
L++S D +L V A
Sbjct: 95 -FLVVSSDLINLKSKIINSIVDYFYCIKAKTPD 126
|
| >1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A* Length = 259 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 6e-10
Identities = 52/201 (25%), Positives = 72/201 (35%), Gaps = 34/201 (16%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVP-----MSNCINSGINKVYILTQYN 65
AVIL GG GTRL T + KP V IGG P M GI I Y
Sbjct: 5 AVILAGGLGTRLSEETIVKPKPMVEIGG------KPILWHIMKMYSVHGIKDFIICCGYK 58
Query: 66 SASLNRHLARAYNYGSGVTF--GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFED 123
+ + A + + S VTF + +EV + + W D
Sbjct: 59 GYVIKEYFANYFLHMSDVTFHMAENRMEVH------HKRVEPWNVTLVDTGD---SSMTG 109
Query: 124 PRNKVIEDVLILS-------GDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGL 176
R K + + + GD + +D + H+ G T++ FG
Sbjct: 110 GRLKRVAEYVKDDEAFLFTYGDGVADLDIKATIDFHKAHGKKATLTATFP----PGRFGA 165
Query: 177 MKINNEGRVLSFSEKPKGKDL 197
+ I G+V SF EKPKG
Sbjct: 166 LDIQA-GQVRSFQEKPKGDGA 185
|
| >3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis} Length = 303 | Back alignment and structure |
|---|
Score = 49.0 bits (116), Expect = 1e-06
Identities = 40/255 (15%), Positives = 81/255 (31%), Gaps = 17/255 (6%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
+L G G+R Y KQ P G ++D + + I +G ++ + +++
Sbjct: 8 LFVLAAGMGSR-YGSLKQ-LDGIGPGG--DTIMDYSVYDAIRAGFGRLVFVIRHSFEKEF 63
Query: 71 R-HLARAYNYGSGVTFGDGCVEVL-AATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKV 128
R + Y V ++ L P K W GT AV +P +
Sbjct: 64 REKILTKYEGRIPVELVFQELDRLPEGFSCPEGREKPW--GTNHAVLMGRDAIREPFAVI 121
Query: 129 IEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSR--ASDFGLMKINNEGRVL 186
D + ++ +Q + + S G+ +++ + +
Sbjct: 122 NADDFYGRNGFEVLARKLMTLEG-KQGEYCMVGYRVGNTLSESGGVSRGVCQVDEKHLLT 180
Query: 187 SFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAND 246
E+ + G AE+ P SM ++ F + + F +
Sbjct: 181 GVVERTGIERTDGTISFRDETGKICTLAEDAP--VSMNMWGFTPDY-FDYSEELFI---N 234
Query: 247 FGSEIIPASANEQFL 261
F + +E F+
Sbjct: 235 FLNAHGQEPKSEFFI 249
|
| >4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae} Length = 255 | Back alignment and structure |
|---|
Score = 43.9 bits (102), Expect = 4e-05
Identities = 18/191 (9%), Positives = 48/191 (25%), Gaps = 19/191 (9%)
Query: 12 VILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNR 71
VI G +R + + K + G L + +++ + ++ N
Sbjct: 3 VIPMAGMSSRFFKAGYTQPKYMLEAHG-QTLFEHSVNSFAAYFASTPFLFIVRNVYDTAV 61
Query: 72 HLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIED 131
+ F + L + + +
Sbjct: 62 FVREKATQLGIKQFYIAELH------------TETRGQAETVTLGLEELAKQGVDY--QG 107
Query: 132 VLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEK 191
+ + +R +++ + G + F + +V+ +EK
Sbjct: 108 SITVFNIDTFRPNFVFPDISQHSDGYLEVFQGGGDNW----SFAKPEHAGSTKVIQTAEK 163
Query: 192 PKGKDLKAMAV 202
DL + +
Sbjct: 164 NPISDLCSTGL 174
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 3e-04
Identities = 26/314 (8%), Positives = 89/314 (28%), Gaps = 86/314 (27%)
Query: 120 LFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNH---RQSGADITI--------SCLPMDD 168
++ + R+++ D + + ++ R+ ++ + ++ I + + +D
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170
Query: 169 SRASDFGLMKINNEGRV--LSFSEKPKGKDLKAMAVDT-TVLGLSKQEAEEKPYIASMGV 225
+ + + ++ L+ + + M + + + + +
Sbjct: 171 CLSYKV---QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 226 YLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYL-FNDYWEDIGTIRSFFEANL 284
+ + E L LL+ + + L + + +F
Sbjct: 228 HSIQAE-LRRLLKSK------------------PYENCLLVLLNVQ-NAKAWNAF----- 262
Query: 285 ALTAHPPMFSFYDAT-KPIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIR 343
+ + K + T+R ++ D + + T ++H + +
Sbjct: 263 ------------NLSCKILLTTR---------FKQVTDFLS--AATTTHISLDHHSMTL- 298
Query: 344 SRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPV---GIGENTKI--------KYEQ 392
+ L + + + P I E+ + K+
Sbjct: 299 -------TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351
Query: 393 LKPICHIVETKYDS 406
+ I+E+ +
Sbjct: 352 CDKLTTIIESSLNV 365
|
| >1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6 Length = 295 | Back alignment and structure |
|---|
Score = 40.9 bits (97), Expect = 5e-04
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 6/36 (16%)
Query: 12 VILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPM 47
++L GG+GTRLYP+T+ +K +PI Y D PM
Sbjct: 7 IVLAGGSGTRLYPITRAVSKQLLPI---Y---DKPM 36
|
| >1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ... Length = 293 | Back alignment and structure |
|---|
Score = 40.9 bits (97), Expect = 5e-04
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 11/56 (19%)
Query: 12 VILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPM-----SNCINSGINKVYILT 62
+IL GG+GTRL+P T +K +P+ Y D PM S + +GI ++ I++
Sbjct: 6 IILAGGSGTRLHPATLAISKQLLPV---Y---DKPMIYYPLSTLMLAGIREILIIS 55
|
| >4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A* Length = 269 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 5e-04
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 6/36 (16%)
Query: 12 VILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPM 47
+IL GG G+RLYP+TK K +P+ PM
Sbjct: 28 IILAGGTGSRLYPITKVTNKHLLPV---G---RYPM 57
|
| >1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6 Length = 296 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 5e-04
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 11/56 (19%)
Query: 12 VILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPM-----SNCINSGINKVYILT 62
+IL GG+GTRL+P+T+ +K +PI Y D PM S + +GI ++ I+T
Sbjct: 7 IILAGGSGTRLHPITRGVSKQLLPI---Y---DKPMIYYPLSVLMLAGIREILIIT 56
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 415 | |||
| 1yp2_A | 451 | Glucose-1-phosphate adenylyltransferase small subu | 100.0 | |
| 3brk_X | 420 | Glucose-1-phosphate adenylyltransferase; ADP-gluco | 100.0 | |
| 3st8_A | 501 | Bifunctional protein GLMU; acetyltransferase, pyro | 100.0 | |
| 2ggo_A | 401 | 401AA long hypothetical glucose-1-phosphate thymid | 100.0 | |
| 1hm9_A | 468 | GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr | 100.0 | |
| 4fce_A | 459 | Bifunctional protein GLMU; GLMU. csgid, niaid, str | 100.0 | |
| 2v0h_A | 456 | Bifunctional protein GLMU; cell WALL, magnesium, c | 100.0 | |
| 3juk_A | 281 | UDP-glucose pyrophosphorylase (GALU); transfer; HE | 100.0 | |
| 4ecm_A | 269 | Glucose-1-phosphate thymidylyltransferase; HET: DA | 100.0 | |
| 1tzf_A | 259 | Glucose-1-phosphate cytidylyltransferase; nucleoti | 100.0 | |
| 2e3d_A | 302 | UTP--glucose-1-phosphate uridylyltransferase; UDP- | 100.0 | |
| 2ux8_A | 297 | Glucose-1-phosphate uridylyltransferase; UGPG, GAL | 100.0 | |
| 3pnn_A | 303 | Conserved domain protein; structural genomics, PSI | 100.0 | |
| 2pa4_A | 323 | UTP-glucose-1-phosphate uridylyltransferase; phosp | 100.0 | |
| 1fxo_A | 293 | Glucose-1-phosphate thymidylyltransferase; rhamnos | 100.0 | |
| 4evw_A | 255 | Nucleoside-diphosphate-sugar pyrophosphorylase; st | 100.0 | |
| 1lvw_A | 295 | Glucose-1-phosphate thymidylyltransferase; protein | 100.0 | |
| 1mc3_A | 296 | Glucose-1-phosphate thymidylyltransferase; glucose | 100.0 | |
| 2qh5_A | 308 | PMI, ALGA, mannose-6-phosphate isomerase; structur | 99.97 | |
| 1jyk_A | 254 | LICC protein, CTP:phosphocholine cytidylytransfera | 99.96 | |
| 2x65_A | 336 | Mannose-1-phosphate guanylyltransferase; nucleotid | 99.96 | |
| 3oam_A | 252 | 3-deoxy-manno-octulosonate cytidylyltransferase; c | 99.95 | |
| 2cu2_A | 337 | Putative mannose-1-phosphate guanylyl transferase; | 99.95 | |
| 3tqd_A | 256 | 3-deoxy-manno-octulosonate cytidylyltransferase; c | 99.93 | |
| 3k8d_A | 264 | 3-deoxy-manno-octulosonate cytidylyltransferase; K | 99.92 | |
| 2y6p_A | 234 | 3-deoxy-manno-octulosonate cytidylyltransferase; l | 99.91 | |
| 2xme_A | 232 | CTP-inositol-1-phosphate cytidylyltransferase; CDP | 99.91 | |
| 1h7e_A | 245 | 3-deoxy-manno-octulosonate cytidylyltransferase; n | 99.9 | |
| 4fcu_A | 253 | 3-deoxy-manno-octulosonate cytidylyltransferase; s | 99.89 | |
| 1vic_A | 262 | 3-deoxy-manno-octulosonate cytidylyltransferase; s | 99.89 | |
| 2icy_A | 469 | Probable UTP-glucose-1-phosphate uridylyltransfera | 99.85 | |
| 3f1c_A | 246 | Putative 2-C-methyl-D-erythritol 4-phosphate cytid | 99.85 | |
| 2vsh_A | 236 | TARI, 2-C-methyl-D-erythritol 4-phosphate cytidyly | 99.85 | |
| 1vgw_A | 231 | 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; | 99.84 | |
| 2xwl_A | 223 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; | 99.84 | |
| 2yc3_A | 228 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran | 99.84 | |
| 1ezi_A | 228 | CMP-N-acetylneuraminic acid synthetase; homodimer, | 99.84 | |
| 2dpw_A | 232 | Hypothetical protein TTHA0179; transferase, struct | 99.8 | |
| 2i5k_A | 488 | UTP--glucose-1-phosphate uridylyltransferase; LEFT | 99.8 | |
| 1qwj_A | 229 | Cytidine monophospho-N-acetylneuraminic acid synth | 99.8 | |
| 1i52_A | 236 | 4-diphosphocytidyl-2-C-methylerythritol synthase; | 99.79 | |
| 3rsb_A | 196 | Adenosylcobinamide-phosphate guanylyltransferase; | 99.77 | |
| 2wee_A | 197 | MOBA-related protein; unknown function; 1.65A {Myc | 99.75 | |
| 2waw_A | 199 | MOBA relate protein; unknown function; HET: PGE; 1 | 99.74 | |
| 2px7_A | 236 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 99.74 | |
| 3q80_A | 231 | 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; | 99.73 | |
| 1vpa_A | 234 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; | 99.72 | |
| 2iu8_A | 374 | LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a | 99.67 | |
| 2e8b_A | 201 | Probable molybdopterin-guanine dinucleotide biosy | 99.66 | |
| 1jv1_A | 505 | Glcnac1P uridyltransferase isoform 1: AGX1; nucleo | 99.65 | |
| 2oeg_A | 505 | UTP-glucose-1-phosphate uridylyltransferase 2, put | 99.64 | |
| 3d5n_A | 197 | Q97W15_sulso; NESG, SSR125, structural genomics, P | 99.63 | |
| 1e5k_A | 201 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.63 | |
| 3r8y_A | 240 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac | 99.55 | |
| 3ngw_A | 208 | Molybdopterin-guanine dinucleotide biosynthesis P | 99.54 | |
| 1w55_A | 371 | ISPD/ISPF bifunctional enzyme; biosynthetic pathwa | 99.54 | |
| 2yqc_A | 486 | UDP-N-acetylglucosamine pyrophosphorylase; uridine | 99.48 | |
| 3c8v_A | 496 | Putative acetyltransferase; YP_390128.1, structura | 99.46 | |
| 3oc9_A | 405 | UDP-N-acetylglucosamine pyrophosphorylase; structu | 99.46 | |
| 3bfp_A | 194 | Acetyltransferase; LEFT-handed beta helix, COA bin | 99.28 | |
| 3mqg_A | 192 | Lipopolysaccharides biosynthesis acetyltransferas; | 99.24 | |
| 2pig_A | 334 | Putative transferase; SCR6, NESG, YDCK, structural | 99.23 | |
| 1xhd_A | 173 | Putative acetyltransferase/acyltransferase; struct | 99.22 | |
| 4ea9_A | 220 | Perosamine N-acetyltransferase; beta helix, acetyl | 99.21 | |
| 3ixc_A | 191 | Hexapeptide transferase family protein; niaid, ssg | 99.19 | |
| 3r3r_A | 187 | Ferripyochelin binding protein; structural genomic | 99.19 | |
| 1v3w_A | 173 | Ferripyochelin binding protein; beta-helix, carbon | 99.19 | |
| 3eh0_A | 341 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr | 99.18 | |
| 4e79_A | 357 | UDP-3-O-acylglucosamine N-acyltransferase; lipopol | 99.17 | |
| 3kwd_A | 213 | Carbon dioxide concentrating mechanism protein; LE | 99.15 | |
| 3r1w_A | 189 | Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid | 99.13 | |
| 3tv0_A | 194 | Dynactin subunit 6; LEFT-handed beta-helix, ARP11, | 99.13 | |
| 3vbi_A | 205 | ANTD, galactoside O-acetyltransferase; anthrose, a | 99.13 | |
| 3pmo_A | 372 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; | 99.11 | |
| 1j2z_A | 270 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.09 | |
| 4eqy_A | 283 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.05 | |
| 3hsq_A | 259 | Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam | 99.05 | |
| 3r0s_A | 266 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.05 | |
| 3t57_A | 305 | UDP-N-acetylglucosamine O-acyltransferase domain- | 99.04 | |
| 2ggo_A | 401 | 401AA long hypothetical glucose-1-phosphate thymid | 99.01 | |
| 1qre_A | 247 | Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth | 99.01 | |
| 4eqy_A | 283 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 99.0 | |
| 3jqy_B | 252 | NEUO, polysialic acid O-acetyltransferase; LEFT-ha | 99.0 | |
| 4e6u_A | 265 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 98.99 | |
| 3fs8_A | 273 | QDTC; acetyltransferase, natural product, deoxysug | 98.99 | |
| 3tv0_A | 194 | Dynactin subunit 6; LEFT-handed beta-helix, ARP11, | 98.98 | |
| 4e6u_A | 265 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 98.98 | |
| 2qia_A | 262 | UDP-N-acetylglucosamine acyltransferase; LEFT-hand | 98.97 | |
| 3ixc_A | 191 | Hexapeptide transferase family protein; niaid, ssg | 98.97 | |
| 3eg4_A | 304 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 98.96 | |
| 3gos_A | 276 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 98.96 | |
| 1xhd_A | 173 | Putative acetyltransferase/acyltransferase; struct | 98.95 | |
| 3tk8_A | 316 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 98.94 | |
| 3fs8_A | 273 | QDTC; acetyltransferase, natural product, deoxysug | 98.92 | |
| 2wlg_A | 215 | Polysialic acid O-acetyltransferase; enzyme, LEFT- | 98.92 | |
| 3r3r_A | 187 | Ferripyochelin binding protein; structural genomic | 98.9 | |
| 3r8y_A | 240 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac | 98.89 | |
| 2qia_A | 262 | UDP-N-acetylglucosamine acyltransferase; LEFT-hand | 98.89 | |
| 3eh0_A | 341 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr | 98.88 | |
| 3pmo_A | 372 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; | 98.88 | |
| 3r5d_A | 347 | Tetrahydrodipicolinate N-succinyletransferase; 1.8 | 98.88 | |
| 1v3w_A | 173 | Ferripyochelin binding protein; beta-helix, carbon | 98.88 | |
| 3srt_A | 188 | Maltose O-acetyltransferase; structural genomics, | 98.86 | |
| 3q1x_A | 313 | Serine acetyltransferase; cysteine biosynthesis, L | 98.86 | |
| 3nz2_A | 195 | Hexapeptide-repeat containing-acetyltransferase; s | 98.86 | |
| 3mqg_A | 192 | Lipopolysaccharides biosynthesis acetyltransferas; | 98.85 | |
| 3c8v_A | 496 | Putative acetyltransferase; YP_390128.1, structura | 98.85 | |
| 3vbi_A | 205 | ANTD, galactoside O-acetyltransferase; anthrose, a | 98.85 | |
| 4e79_A | 357 | UDP-3-O-acylglucosamine N-acyltransferase; lipopol | 98.85 | |
| 3hjj_A | 190 | Maltose O-acetyltransferase; LEFT-handed beta-heli | 98.84 | |
| 3kwd_A | 213 | Carbon dioxide concentrating mechanism protein; LE | 98.84 | |
| 3r1w_A | 189 | Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid | 98.84 | |
| 3ftt_A | 199 | Putative acetyltransferase sacol2570; galactoside | 98.84 | |
| 3fsy_A | 332 | Tetrahydrodipicolinate N-succinyltransferase; beta | 98.82 | |
| 2iu8_A | 374 | LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a | 98.82 | |
| 2rij_A | 387 | Putative 2,3,4,5-tetrahydropyridine-2-carboxylate | 98.78 | |
| 4hur_A | 220 | Virginiamycin A acetyltransferase; structural geno | 98.78 | |
| 1krr_A | 203 | Galactoside O-acetyltransferase; LEFT-handed paral | 98.77 | |
| 1qre_A | 247 | Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth | 98.76 | |
| 1hm9_A | 468 | GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr | 98.74 | |
| 3r3i_A | 528 | UTP--glucose-1-phosphate uridylyltransferase; ross | 98.73 | |
| 2p2o_A | 185 | Maltose transacetylase; GK1921, GKA001001921.1, ge | 98.72 | |
| 4fce_A | 459 | Bifunctional protein GLMU; GLMU. csgid, niaid, str | 98.72 | |
| 3f1x_A | 310 | Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 | 98.72 | |
| 3mc4_A | 287 | WW/RSP5/WWP domain:bacterial transferase hexapept | 98.71 | |
| 1ocx_A | 182 | Maltose O-acetyltransferase; LEFT-handed parallel | 98.69 | |
| 2pig_A | 334 | Putative transferase; SCR6, NESG, YDCK, structural | 98.69 | |
| 3brk_X | 420 | Glucose-1-phosphate adenylyltransferase; ADP-gluco | 98.67 | |
| 1j2z_A | 270 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 98.67 | |
| 3tk8_A | 316 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 98.66 | |
| 1ssq_A | 267 | SAT, serine acetyltransferase; LEFT-handed paralle | 98.65 | |
| 3jqy_B | 252 | NEUO, polysialic acid O-acetyltransferase; LEFT-ha | 98.65 | |
| 3bfp_A | 194 | Acetyltransferase; LEFT-handed beta helix, COA bin | 98.64 | |
| 3t57_A | 305 | UDP-N-acetylglucosamine O-acyltransferase domain- | 98.64 | |
| 1t3d_A | 289 | SAT, serine acetyltransferase; LEFT-handed-beta-he | 98.64 | |
| 4ea9_A | 220 | Perosamine N-acetyltransferase; beta helix, acetyl | 98.63 | |
| 3hsq_A | 259 | Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam | 98.62 | |
| 3r5d_A | 347 | Tetrahydrodipicolinate N-succinyletransferase; 1.8 | 98.61 | |
| 3gos_A | 276 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 98.6 | |
| 3eg4_A | 304 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 98.6 | |
| 3st8_A | 501 | Bifunctional protein GLMU; acetyltransferase, pyro | 98.58 | |
| 3gue_A | 484 | UTP-glucose-1-phosphate uridylyltransferase 2; pho | 98.57 | |
| 3eev_A | 212 | Chloramphenicol acetyltransferase; beta-helix, str | 98.53 | |
| 1yp2_A | 451 | Glucose-1-phosphate adenylyltransferase small subu | 98.52 | |
| 3fsy_A | 332 | Tetrahydrodipicolinate N-succinyltransferase; beta | 98.51 | |
| 2v0h_A | 456 | Bifunctional protein GLMU; cell WALL, magnesium, c | 98.45 | |
| 2wlg_A | 215 | Polysialic acid O-acetyltransferase; enzyme, LEFT- | 98.45 | |
| 2p2o_A | 185 | Maltose transacetylase; GK1921, GKA001001921.1, ge | 98.42 | |
| 3srt_A | 188 | Maltose O-acetyltransferase; structural genomics, | 98.42 | |
| 3hjj_A | 190 | Maltose O-acetyltransferase; LEFT-handed beta-heli | 98.33 | |
| 4e8l_A | 219 | Virginiamycin A acetyltransferase; structural geno | 98.33 | |
| 1ocx_A | 182 | Maltose O-acetyltransferase; LEFT-handed parallel | 98.33 | |
| 3mc4_A | 287 | WW/RSP5/WWP domain:bacterial transferase hexapept | 98.33 | |
| 3nz2_A | 195 | Hexapeptide-repeat containing-acetyltransferase; s | 98.31 | |
| 1t3d_A | 289 | SAT, serine acetyltransferase; LEFT-handed-beta-he | 98.31 | |
| 1mr7_A | 209 | Streptogramin A acetyltransferase; LEFT-handed par | 98.29 | |
| 3q1x_A | 313 | Serine acetyltransferase; cysteine biosynthesis, L | 98.29 | |
| 1ssq_A | 267 | SAT, serine acetyltransferase; LEFT-handed paralle | 98.29 | |
| 3f1x_A | 310 | Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 | 98.28 | |
| 1krr_A | 203 | Galactoside O-acetyltransferase; LEFT-handed paral | 98.27 | |
| 3ftt_A | 199 | Putative acetyltransferase sacol2570; galactoside | 98.17 | |
| 1xat_A | 212 | Xenobiotic acetyltransferase; chloramphenicol, LEF | 98.14 | |
| 4hur_A | 220 | Virginiamycin A acetyltransferase; structural geno | 98.08 | |
| 3eev_A | 212 | Chloramphenicol acetyltransferase; beta-helix, str | 97.98 | |
| 2rij_A | 387 | Putative 2,3,4,5-tetrahydropyridine-2-carboxylate | 97.86 | |
| 3ogz_A | 630 | UDP-sugar pyrophosphorylase; LEFT handed beta heli | 97.59 | |
| 4e8l_A | 219 | Virginiamycin A acetyltransferase; structural geno | 97.36 | |
| 1xat_A | 212 | Xenobiotic acetyltransferase; chloramphenicol, LEF | 97.34 | |
| 1mr7_A | 209 | Streptogramin A acetyltransferase; LEFT-handed par | 97.21 | |
| 2i5e_A | 211 | Hypothetical protein MM_2497; APC86122, methanosar | 96.88 | |
| 1qg8_A | 255 | Protein (spore coat polysaccharide biosynthesis P | 88.12 | |
| 3bcv_A | 240 | Putative glycosyltransferase protein; protein stru | 87.47 | |
| 3cgx_A | 242 | Putative nucleotide-diphospho-sugar transferase; Y | 86.01 |
| >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-55 Score=433.72 Aligned_cols=394 Identities=57% Similarity=1.008 Sum_probs=293.1
Q ss_pred ccccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCc
Q 014953 4 RDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGV 83 (415)
Q Consensus 4 ~~~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~ 83 (415)
..|++|+|||||||+|+||+|||..+||+|+|++|+||||+|++++|.++|+++|+|+++++.+++.+|+.+.+ +.+.
T Consensus 16 ~~~~~~~avILAaG~gtRl~plT~~~pK~llpi~g~~pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~--~~~~ 93 (451)
T 1yp2_A 16 DASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAY--ASNM 93 (451)
T ss_dssp CHHHHEEEEEC------CCTTTTTTSCGGGCEETTTEETTHHHHHHHHHTTCCEEEEEESCCCHHHHHHHHHHC--C---
T ss_pred ccccceEEEEECCCCCCcccchhcCCcceeeEECCcceeHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHhhhh--hccc
Confidence 34667999999999999999999999999999999878999999999999999999999999899999987643 1000
Q ss_pred -cc-CCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEE
Q 014953 84 -TF-GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITI 161 (415)
Q Consensus 84 -~~-~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti 161 (415)
++ ....++++...+.+ .+.+|+.||+++++.++.++... ..++|++++||++++.+|.+++++|+++++++|+
T Consensus 94 ~~~~~~~~v~i~~~~~~~--~~~~~~~Gt~~al~~a~~~~~~~---~~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~tl 168 (451)
T 1yp2_A 94 GGYKNEGFVEVLAAQQSP--ENPDWFQGTADAVRQYLWLFEEH---TVLEYLILAGDHLYRMDYEKFIQAHRETDADITV 168 (451)
T ss_dssp -----CCEEEEEESCSST--TSCCCCCSHHHHHHHTHHHHTTS---CCSEEEEECSCEECCCCHHHHHHHHHHTTCSEEE
T ss_pred ccccccCcEEEecccccc--cccccccCcHHHHHHHHHHHHhc---CCCeEEEecCcEEEcCCHHHHHHHHHHcCCcEEE
Confidence 01 11224555433321 12345679999999999888531 1479999999999999999999999999999999
Q ss_pred EEEEcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhC
Q 014953 162 SCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF 241 (415)
Q Consensus 162 ~~~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~ 241 (415)
++.+.+.+.+.+||++.+|++++|..|.|||..+....+.++.+++...+......++++++|+|+|++++|..+++...
T Consensus 169 ~~~~~~~~~~~~~g~v~~d~~~~v~~~~ekp~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~ 248 (451)
T 1yp2_A 169 AALPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKF 248 (451)
T ss_dssp EEEEECHHHHTTSEEEEECTTSBEEEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHTTC
T ss_pred EEEEcChhhcccCCEEEECCCCCEEEEEECCCchhhccccccccccccccccccCCcceEEeeEEEEcHHHHHHHHHhhc
Confidence 88877533367899999998899999999998654333334434332211111113578999999999999877776654
Q ss_pred CCCCcccccchhhhccc-ceEEEEEeCceEEecCCHHHHHHHHHhhcCCC-CCCCccCCCCCccccCccCCCeeecCCcc
Q 014953 242 PTANDFGSEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEANLALTAHP-PMFSFYDATKPIYTSRRNLPPSKIDDSKI 319 (415)
Q Consensus 242 ~~~~~~~~~~l~~l~~~-~~i~~~~~~g~~~di~t~~~y~~an~~~l~~~-~~~~~~~~~~~~~~~~~i~~~~~i~~~~i 319 (415)
+...+|.+++++.++++ .++++|.++++|.|++|+++|.+|+++++++. +..+++++++.+.+.+.+.+++++.++.|
T Consensus 249 ~~~~~~~~~~l~~~i~~g~~v~~~~~~~~w~digt~~~l~~a~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~I 328 (451)
T 1yp2_A 249 PGANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADV 328 (451)
T ss_dssp TTCCCTTTTHHHHHHHTTCCEEEEECCSCCEECSSHHHHHHHHHGGGCSSSCSSCSCCSSSCCCCCCCCCCCEEEEEEEE
T ss_pred ccccchHhhHHHHHHhcCCceEEEEeCCEEEECCCHHHHHHHHHHHhcccccchhccCCCCeeccCCccCCCeEEcceEE
Confidence 44556777899988876 78999999999999999999999999999877 66778899999999999999999988888
Q ss_pred ccceECCCCEEcceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEeeeEECCCeEE
Q 014953 320 VDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKYEQLKPICHI 399 (415)
Q Consensus 320 ~~~~ig~~~~I~~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~~i~~~~~i 399 (415)
.++.||++|+|+++.|.+|+||++|.||++++|.+++++++...+...........|...+.||+||.|.+|+||+++.|
T Consensus 329 ~~~~Ig~~~~I~~~~i~~~~Ig~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~i~~~~Ig~~~~I 408 (451)
T 1yp2_A 329 TDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARI 408 (451)
T ss_dssp EEEEECTTCEEEEEEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEESEEECTTCEE
T ss_pred eCeEECCCCEEcceEEeccEECCCCEECCCCEEcCceEECCCCcccccccccccccCceeEEECCCCEEeccEeCCCcEE
Confidence 89999999999888889999999999999999999999988222221111111111211134555555545555555555
Q ss_pred cCCcc
Q 014953 400 VETKY 404 (415)
Q Consensus 400 ~~~~~ 404 (415)
|+++.
T Consensus 409 G~~~~ 413 (451)
T 1yp2_A 409 GDNVK 413 (451)
T ss_dssp CTTCE
T ss_pred CCCCE
Confidence 54443
|
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-52 Score=413.36 Aligned_cols=363 Identities=35% Similarity=0.583 Sum_probs=291.9
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCccc
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (415)
|++|+|||||||.|+||+|||..+||+|+|++|+||||+|++++|.++|+++|+|+++++.+++.+|+.+.|.+.. .+
T Consensus 10 m~~~~avILAaG~gtRl~plT~~~pK~llpi~gk~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~~~~--~~ 87 (420)
T 3brk_X 10 ARDAMAYVLAGGRGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNSGIRRIGVATQYKAHSLIRHLQRGWDFFR--PE 87 (420)
T ss_dssp GGGEEEEEEECCCCGGGGGGGSSSCGGGSEETTTEETHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHSCCCC--GG
T ss_pred hhceEEEEEcCCCCCccchhhcCCcccccccCCCCcHHHHHHHHHHhCCCCeEEEEeCCChHHHHHHHhhhhcccc--cc
Confidence 3468999999999999999999999999999999679999999999999999999999998999999876432110 01
Q ss_pred CCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEEE
Q 014953 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLP 165 (415)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~~ 165 (415)
....+.++...+.. ....|+.||+++++.++.++... ..++|++++||++++.++.++++.|+++++++|+++.+
T Consensus 88 ~~~~v~i~~~~~~~--~~~~~~~Gt~~al~~a~~~l~~~---~~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~tl~~~~ 162 (420)
T 3brk_X 88 RNESFDILPASQRV--SETQWYEGTADAVYQNIDIIEPY---APEYMVILAGDHIYKMDYEYMLQQHVDSGADVTIGCLE 162 (420)
T ss_dssp GTCEEEEECCC---------CCCCHHHHHHTTHHHHHHH---CCSEEEEEESSCEECBCTHHHHHHHHHTTCSEEEEEEE
T ss_pred ccCCEEEeCccccc--cCCccccCCHHHHHHHHHHHHhc---CCCEEEEecccEEEchHHHHHHHHHHHcCCeEEEEEee
Confidence 11124454433210 01124479999999999888520 13789999999999999999999999999999999887
Q ss_pred cCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCC---
Q 014953 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP--- 242 (415)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~--- 242 (415)
.+...+..|+++.+|++++|..|.|||..+... .....++++++|+|+|++++|..+++...+
T Consensus 163 ~~~~~~~~~g~v~~d~~g~v~~~~ekp~~~~~~--------------~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~ 228 (420)
T 3brk_X 163 VPRMEATGFGVMHVNEKDEIIDFIEKPADPPGI--------------PGNEGFALASMGIYVFHTKFLMEAVRRDAADPT 228 (420)
T ss_dssp EETTGGGGSEEEEECTTSBEEEEEESCSSCCCB--------------TTBTTEEEEEEEEEEEEHHHHHHHHTSSCCC--
T ss_pred cCccccCcccEEEECCCCcEEEeEeCCCccccc--------------cccccceEEeeeeEEEeHHHHHHHHHHhcccCC
Confidence 644346789999998889999999998643210 000124789999999999988666654322
Q ss_pred CCCcccccchhhhcccceEEEEEe-----------CceEEecCCHHHHHHHHHhhcCCCCCCCccCCCCCccccCccCCC
Q 014953 243 TANDFGSEIIPASANEQFLKAYLF-----------NDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPP 311 (415)
Q Consensus 243 ~~~~~~~~~l~~l~~~~~i~~~~~-----------~g~~~di~t~~~y~~an~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 311 (415)
...+|..++++.+++++++++|.+ +++|.||+|+++|.+|+++++++++...++.+.+.+.+.+.+.|+
T Consensus 229 ~~~~~~~d~l~~li~~g~v~~~~~~~~~~~~~~~~~~~~~dI~t~~d~~~a~~~ll~~~~~~~~~~~~~~i~~~~~i~~~ 308 (420)
T 3brk_X 229 SSRDFGKDIIPYIVEHGKAVAHRFADSCVRSDFEHEPYWRDVGTIDAYWQANIDLTDVVPDLDIYDKSWPIWTYAEITPP 308 (420)
T ss_dssp --------CTTHHHHHSCEEEEEHHHHBCCCTTCSSCCEECCCSHHHHHHHHHHTTSSSCSSCTTCCSSCCCCCCCCCCC
T ss_pred ccccchHHHHHHHhhhCcEEEEEeccccccccccCCCEEEECCCHHHHHHHHHHHhCCCchhhcCCCCCceeeccccCCC
Confidence 123566789999888889999999 899999999999999999999887766677788888899999999
Q ss_pred eee-c-----CCccccceECCCCEEcceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCC
Q 014953 312 SKI-D-----DSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGEN 385 (415)
Q Consensus 312 ~~i-~-----~~~i~~~~ig~~~~I~~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~ 385 (415)
+++ . ++.+.++.||++|+|.++.|.+|+||++|+||++|.|.+|+|+++ |.||+|
T Consensus 309 ~~i~~~~~~~~~~i~~~~ig~~~~I~~~~i~~~~ig~~~~I~~~~~i~~~~i~~~-------------------~~i~~~ 369 (420)
T 3brk_X 309 AKFVHDDEDRRGSAVSSVVSGDCIISGAALNRSLLFTGVRANSYSRLENAVVLPS-------------------VKIGRH 369 (420)
T ss_dssp CEEECBCSSCBCEEESCEECSSCEEESCEEESCEECTTCEECTTCEEEEEEECTT-------------------CEECTT
T ss_pred cEEecccccCCcEecCCEECCCCEEcCCEEeCcEEcCCCEECCCCEEcceEEcCC-------------------CEECCC
Confidence 999 5 677889999999999778999999999999999999999999999 899999
Q ss_pred CEEeeeEECCCeEEcCCcccCcc
Q 014953 386 TKIKYEQLKPICHIVETKYDSST 408 (415)
Q Consensus 386 ~~i~~~~i~~~~~i~~~~~~~~~ 408 (415)
|.|.+|+||+++.|++++.+.+.
T Consensus 370 ~~i~~~~ig~~~~i~~~~~i~~~ 392 (420)
T 3brk_X 370 AQLSNVVIDHGVVIPEGLIVGED 392 (420)
T ss_dssp CEEEEEEECTTCEECTTCEESSC
T ss_pred CEEeceEECCCCEECCCCEEeCC
Confidence 99999999999999999976554
|
| >3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-44 Score=357.40 Aligned_cols=365 Identities=16% Similarity=0.167 Sum_probs=265.9
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCccc
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (415)
..++.+||||||.||||+|+| ||+|+||+|| |||+|+|++|.++|+++|+|+++|+.+++++|+.+... .|
T Consensus 10 ~~~~~vvILAaG~GtRm~~~~---pK~l~pv~gk-p~i~~~l~~~~~~g~~~i~vv~~~~~~~i~~~~~~~~~-----~~ 80 (501)
T 3st8_A 10 PGDTAVLVLAAGPGTRMRSDT---PKVLHTLAGR-SMLSHVLHAIAKLAPQRLIVVLGHDHQRIAPLVGELAD-----TL 80 (501)
T ss_dssp --CEEEEEEECSCCGGGCCSS---CGGGCEETTE-EHHHHHHHHHHHHCCSEEEEEECTTHHHHHHHHHHHHH-----HH
T ss_pred CCCceEEEECCcCcccCCCCC---CHHHeEECCh-hHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHHHHHH-----hc
Confidence 356889999999999999986 9999999999 99999999999999999999999999999999975321 12
Q ss_pred CCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-eccc-ChHHHHHHHHHcCCcEEEEE
Q 014953 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRM-DYMDFVQNHRQSGADITISC 163 (415)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~-~l~~~l~~h~~~~~~~ti~~ 163 (415)
+.. ++++. |. +++|||+|++++++++.+. ..+++++++||. ++.. .+..++++|+..++++|++.
T Consensus 81 ~~~-i~~~~--q~-------~~lGTa~Av~~a~~~l~~~---~~~~~lvl~gd~~l~~~~~~~~l~~~h~~~~~~~ti~~ 147 (501)
T 3st8_A 81 GRT-IDVAL--QD-------RPLGTGHAVLCGLSALPDD---YAGNVVVTSGDTPLLDADTLADLIATHRAVSAAVTVLT 147 (501)
T ss_dssp TSC-CEEEE--CS-------SCCCHHHHHHHHHTTSCTT---CCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CCc-EEEEE--cC-------CCCCcHHHHHHHHHHhccc---cccceeeecCcceeecHHHHHHHHHHHhhccccceEee
Confidence 211 23322 22 2479999999999998641 246899999998 4444 48999999999999999999
Q ss_pred EEcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC
Q 014953 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (415)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~ 243 (415)
.+.++ +..||.+..|++|+|..+.||++.+.. + ...+++++|+|+|++++|+.+++....+
T Consensus 148 ~~~~d--p~~yG~i~~~~~g~v~~ivEk~~~~~~---------------~--~~i~~in~Giy~f~~~~l~~~l~~l~~~ 208 (501)
T 3st8_A 148 TTLDD--PFGYGRILRTQDHEVMAIVEQTDATPS---------------Q--REIREVNAGVYAFDIAALRSALSRLSSN 208 (501)
T ss_dssp EECSC--CTTSCEEEECTTCCEEEEECGGGCCHH---------------H--HHCCEEEEEEEEEEHHHHHHHHTTCCCC
T ss_pred eccCC--chhccccccccceeEEeeccccCCChh---------------h--ccceeeeceeeeecchhHHHhhhhhccc
Confidence 99887 789999999999999999999876431 1 1247899999999999998887664332
Q ss_pred ---CCcccccchhhhcc-cceEEEEEeCceEEe--cCCHHHHHHHHHhhc---------CCC----CCCCccCCCCCccc
Q 014953 244 ---ANDFGSEIIPASAN-EQFLKAYLFNDYWED--IGTIRSFFEANLALT---------AHP----PMFSFYDATKPIYT 304 (415)
Q Consensus 244 ---~~~~~~~~l~~l~~-~~~i~~~~~~g~~~d--i~t~~~y~~an~~~l---------~~~----~~~~~~~~~~~~~~ 304 (415)
...+..+++..+.. +..+..+..+.+|.. +++...+.++...+. ... +...++.....+.+
T Consensus 209 n~~~e~yltd~i~~~~~~g~~v~~~~~~~~~~~~g~n~~~~l~~~~~~~~~r~~~~~~~~gv~~~dp~~~~i~~dv~IG~ 288 (501)
T 3st8_A 209 NAQQELYLTDVIAILRSDGQTVHASHVDDSALVAGVNNRVQLAELASELNRRVVAAHQLAGVTVVDPATTWIDVDVTIGR 288 (501)
T ss_dssp STTCSCCTTHHHHHHHHTTCCEEEEECSSGGGGCCCSSHHHHHHHHHHHHHHHHHHHHHTTCEESCGGGEEECTTCEECT
T ss_pred ccccccchhhHHHHHHhcCceEEEEeccchhhhcccccHHHHHHHHHHhhhhhhhhhcccCceeeeeccccccCceEECC
Confidence 23334445544443 456777777766554 445555544433221 111 11111122222222
Q ss_pred cCccCCCeee----------------------------------------------cCCccc-cceECCCCEEc-ceEEe
Q 014953 305 SRRNLPPSKI----------------------------------------------DDSKIV-DSIISHGSFIT-SSFIE 336 (415)
Q Consensus 305 ~~~i~~~~~i----------------------------------------------~~~~i~-~~~ig~~~~I~-~~~i~ 336 (415)
.+.|.+++++ +.+.++ +++|+++|.|| .+.++
T Consensus 289 dv~I~~~v~i~g~~~Ig~~~~I~~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~ig~~~~i~~~~~i~~~v~IG~~v~ik 368 (501)
T 3st8_A 289 DTVIHPGTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASVVRTHGSSSSIGDGAAVGPFTYLRPGTALGADGKLGAFVEVK 368 (501)
T ss_dssp TCEECSSEEEETTCEECTTCEECSSCEEEEEEECTTCEECSEEEEEEEECTTCEECSSEEECTTCEECTTCEEEETEEEE
T ss_pred cceecceeeecCccccccceEEeeceeecCceEecCCEEEeecccccccccccccCCceeecCCcEEccccccCCeEEEc
Confidence 2222222211 011111 46677788888 47889
Q ss_pred eeEEccCcEECCCcEEeecEEeCCccccchhHH---------HhhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccC
Q 014953 337 HSVVGIRSRINANVHLKDTMMLGADFYETDAEV---------ASLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDS 406 (415)
Q Consensus 337 ~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~---------~~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~ 406 (415)
+|+||++|+|+..+.+.+|+|+.++.|++++.+ .+.|+++ |.||.||.|. .+.||+++.|++|+.+.
T Consensus 369 ~s~Ig~gskI~~~~~i~d~~Ig~~v~IG~g~i~~n~dg~~~~~t~IGd~---~~iG~~~~l~~~v~Ig~~~~i~ags~v~ 445 (501)
T 3st8_A 369 NSTIGTGTKVPHLTYVGDADIGEYSNIGASSVFVNYDGTSKRRTTVGSH---VRTGSDTMFVAPVTIGDGAYTGAGTVVR 445 (501)
T ss_dssp SCEECTTCEEEESCEEESEEECSSCEECTTCEEECBCSSSBCCEEECTT---CEECTTCEEESSEEECTTCEECTTCEEC
T ss_pred cceecCCcEEeccceecCceEcCCCEECCCEEEEcccCCcccCCEECCC---cEECCCCEEcCCcEECCCCEECCCCEEC
Confidence 999999999999999999999999999998765 2567777 8888888887 89999999999999999
Q ss_pred cccccccc
Q 014953 407 STISRFSL 414 (415)
Q Consensus 407 ~~~~~~~~ 414 (415)
+-+-++++
T Consensus 446 ~dvp~~~l 453 (501)
T 3st8_A 446 EDVPPGAL 453 (501)
T ss_dssp SCBCTTCE
T ss_pred cccCCCCe
Confidence 88888775
|
| >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-43 Score=344.78 Aligned_cols=343 Identities=18% Similarity=0.261 Sum_probs=250.9
Q ss_pred eEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCc
Q 014953 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (415)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (415)
|+|||||||.|+||+|||..+||+|+|++|+ |||+|++++|.++|+++|+|+++++ +.+++.... .
T Consensus 1 m~aiIlA~G~g~R~~plt~~~~K~ll~i~g~-pli~~~l~~l~~~~~~~i~vv~~~~---i~~~~~~~~---~------- 66 (401)
T 2ggo_A 1 MKAFILAAGSGERLEPITHTRPKAFVPILSK-PLIEYQIEYLRKCGIRDITVIVSSK---NKEYFEKKL---K------- 66 (401)
T ss_dssp CEEEEECCCCCGGGTTGGGTSCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECGG---GHHHHHHHC---T-------
T ss_pred CeEEEEcCcCccccCcccCCCCcceeeECCE-eHHHHHHHHHHHCCCCEEEEEeCHH---HHHHhhccC---C-------
Confidence 6899999999999999999999999999999 9999999999999999999999876 666665431 0
Q ss_pred eEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecc--cChHHHHHHHHHcCCcEEEEEEEc
Q 014953 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYR--MDYMDFVQNHRQSGADITISCLPM 166 (415)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~--~~l~~~l~~h~~~~~~~ti~~~~~ 166 (415)
.+.++.... ++.|++++++.+.+ .++|++++||+++. .++.++++ .+++++++.+.
T Consensus 67 ~i~~~~~~~--------~~~g~~~~l~~~~~---------~~~~lv~~~D~~~~~~~~~~~l~~-----~~~~~i~~~~~ 124 (401)
T 2ggo_A 67 EISIVTQKD--------DIKGTGAAILSAKF---------NDEALIIYGDLFFSNEKEICNIIT-----LKENAIIGVKV 124 (401)
T ss_dssp TCEEEECCT--------TCCBSTTTGGGCCC---------SSEEEEEETTEEESCSHHHHHHTT-----CSSEEEEEEEC
T ss_pred cEEEEeCCC--------CCCChHHHHHHhcc---------CCCEEEEeCccccccHHHHHHHHH-----hcCCEEEEEEc
Confidence 023332211 13588888877643 27899999999776 44666665 45678888877
Q ss_pred CCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC--C
Q 014953 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT--A 244 (415)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~--~ 244 (415)
++ +..|+.+..++++++..+.|||..+. ++++++|+|+|++++|.. ++...+. .
T Consensus 125 ~~--~~~~~~v~~~~~g~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~~-l~~~~~~~~~ 180 (401)
T 2ggo_A 125 SN--PKDYGVLVLDNQNNLSKIIEKPEIPP---------------------SNLINAGIYKLNSDIFTY-LDKISISERG 180 (401)
T ss_dssp SC--CSSSCEEEECTTSSEEEEECSCSSCS---------------------CSEEEEEEEEEETHHHHH-HHHSCCCSSS
T ss_pred CC--CcceeEEEECCCCeEEEEEECCCCCC---------------------CcEEEEEEEEEcHHHHHH-hhhcCcCCCC
Confidence 65 56788888888899999999886432 468999999999999864 4443211 1
Q ss_pred CcccccchhhhcccceEEEEEeCceEEecCCHHHHHHHHHhhcCCCCC---CCccCCCCC------------ccccCc--
Q 014953 245 NDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPM---FSFYDATKP------------IYTSRR-- 307 (415)
Q Consensus 245 ~~~~~~~l~~l~~~~~i~~~~~~g~~~di~t~~~y~~an~~~l~~~~~---~~~~~~~~~------------~~~~~~-- 307 (415)
.....++++.+..+.++.++..+++|.||+||+||.+|++.+++++.. ...+++.+. +.+.+.
T Consensus 181 ~~~~~~~~~~~~~g~~v~~~~~~~~~~dI~t~edl~~a~~~l~~~~~~~~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~ 260 (401)
T 2ggo_A 181 ELELTDAINLMAKDHRVKVIEYEGYWMDIGKPWNIIDVNKWALDNLVFSQNLGNVEDNVKIKGKVIIEEDAEIKSGTYIE 260 (401)
T ss_dssp CBCHHHHHHHHHHHSCEEEEECCSCEEECCSHHHHHHHHHHHHHHTCCCEECSEECSSCEEESCEEECTTCEECTTCEEE
T ss_pred ceEHHHHHHHHHCCCcEEEEEecceEEcCCCHHHHHHHHHHHHHhcccccccceeCCCCEEcCCeEEcCCCEECCCCEEe
Confidence 111246676662235899999999999999999999999988765421 011222222 222222
Q ss_pred ----cCCCeee-cCCccc-cceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHH----------
Q 014953 308 ----NLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVA---------- 370 (415)
Q Consensus 308 ----i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~---------- 370 (415)
|++++.| +++.|. +++||++|.|+ ++.|.+|+|++++.|+.++.|.+++|++++.|+.++.+.
T Consensus 261 ~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~~~~~~~ 340 (401)
T 2ggo_A 261 GPVYIGKGSEIGPNSYLRPYTILVEKNKIGASVEVKESVIMEGSKIPHLSYVGDSVIAEDVNFGAGTLIANLRFDEKEVK 340 (401)
T ss_dssp SSEEECTTCEECSSCEECTTEEECSSCEEEETCEEESEEECTTCEEEESCEEESCEECTTCEECTTCEECCSCTTCSCCE
T ss_pred CCeEECCCCEECCCCEEcCCcEECCCCEECCCCEEecCEEcCCcEECCCceEcceEECCCcEECCCcEEcCcccCCCcee
Confidence 2333333 334443 57778888887 577788888888888888888888888888888888764
Q ss_pred ----------------hhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 371 ----------------SLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 371 ----------------~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
+.++++ |.||.||.|. ++.||+++.|++++.+.+.+.++++
T Consensus 341 ~~i~~~~~~~~~~~~~v~Ig~~---~~Ig~~~~I~~gv~Ig~~~vi~~gsvv~~~vp~~~~ 398 (401)
T 2ggo_A 341 VNVKGKRISSGRRKLGAFIGGH---VRTGINVTILPGVKIGAYARIYPGAVVNRDVGYGEF 398 (401)
T ss_dssp EEETTEEEECSCSSCCCEECTT---CEECTTCEECTTCEECTTCEECTTCEECSCBCTTCE
T ss_pred EEECCceEEecccccCcEECCC---eEECCCcEEcCCcEECCCcEECCCCeEccccCCCcE
Confidence 344555 6677777776 7888888888888888888888775
|
| >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-43 Score=348.18 Aligned_cols=354 Identities=19% Similarity=0.231 Sum_probs=250.5
Q ss_pred eEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCc
Q 014953 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (415)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (415)
-+|||||||.|+||++ .+||+|+|++|+ |||+|++++|.++|+++|+|++++..+++.+++.+ +
T Consensus 12 ~~~vIlAaG~g~R~~~---~~pK~l~~i~gk-pli~~~l~~l~~~g~~~iivv~~~~~~~i~~~~~~------~------ 75 (468)
T 1hm9_A 12 NFAIILAAGKGTRMKS---DLPKVLHKVAGI-SMLEHVFRSVGAIQPEKTVTVVGHKAELVEEVLAG------Q------ 75 (468)
T ss_dssp EEEEEECCCCCGGGCC---SSCGGGSEETTE-EHHHHHHHHHHTTCCSEEEEEECTTHHHHHHSSSS------S------
T ss_pred CcEEEEcCCCCccCCC---CCCcEeeEECCc-cHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHhCC------C------
Confidence 5799999999999984 689999999999 99999999999999999999999987777665421 1
Q ss_pred eEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe--ecccChHHHHHHHHHcCCcEEEEEEEc
Q 014953 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGADITISCLPM 166 (415)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~--i~~~~l~~~l~~h~~~~~~~ti~~~~~ 166 (415)
+.++... +..|++++++.++.+++.. .++|++++||. +...++.++++.|++.+++++++..+.
T Consensus 76 -i~~v~~~---------~~~G~~~sl~~a~~~~~~~----~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~i~~~~~ 141 (468)
T 1hm9_A 76 -TEFVTQS---------EQLGTGHAVMMTEPILEGL----SGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAET 141 (468)
T ss_dssp -SEEEECS---------SCCCHHHHHHTTHHHHTTC----CSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEEC
T ss_pred -cEEEeCC---------ccCChHHHHHHHHHHhccC----CCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEecc
Confidence 2222211 1369999999999888521 47899999999 456679999999999888999888887
Q ss_pred CCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC---
Q 014953 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT--- 243 (415)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~--- 243 (415)
.+ +..|+.+..|++++|..+.|||..... ....++.++|+|+|+++.|.+.++.....
T Consensus 142 ~~--~~~~g~v~~d~~g~v~~~~ek~~~~~~-----------------~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~ 202 (468)
T 1hm9_A 142 DN--PFGYGRIVRNDNAEVLRIVEQKDATDF-----------------EKQIKEINTGTYVFDNERLFEALKNINTNNAQ 202 (468)
T ss_dssp SC--CTTSCEEEECTTCCEEEEECTTTCCTT-----------------GGGCCEEEEEEEEEEHHHHHHHHTTCCSCSTT
T ss_pred CC--CCceeEEEECCCCCEEEEEECCCCChH-----------------HhcCeEEEEEEEEEEHHHHHHHHHhhccccCC
Confidence 65 567999999888999999998753210 00247899999999999776666543222
Q ss_pred CCcccccchhhhccc-ceEEEEEeCceEEe--cCCHHHHHHHHHhhcCCC------CCC-------CccC----------
Q 014953 244 ANDFGSEIIPASANE-QFLKAYLFNDYWED--IGTIRSFFEANLALTAHP------PMF-------SFYD---------- 297 (415)
Q Consensus 244 ~~~~~~~~l~~l~~~-~~i~~~~~~g~~~d--i~t~~~y~~an~~~l~~~------~~~-------~~~~---------- 297 (415)
...+..++++.+++. .++++|.++++|.+ ++|++||.+|+..+..+. ... ..++
T Consensus 203 ~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~ 282 (468)
T 1hm9_A 203 GEYYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVMRRRINHKHMVNGVSFVNPEATYIDIDVEIAPEVQ 282 (468)
T ss_dssp CSCCTTHHHHHHHHHTCCEEEEECSSGGGGCCCCSHHHHHHHHHHHHHHHHHHHHHTTCEESCGGGCEECTTCEECTTCE
T ss_pred CeEEHHHHHHHHHHCCCEEEEEEcCChHHhhCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEECCCeeEECCCcEECCCCE
Confidence 223457888887775 58999999999977 559999999997654321 111 1122
Q ss_pred --CCCCccccCccCCCeee-cCCccccceECCCCEEcceEEeeeEEccCcEECCCcEEe-ecEEeCCccccchhHHH---
Q 014953 298 --ATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLK-DTMMLGADFYETDAEVA--- 370 (415)
Q Consensus 298 --~~~~~~~~~~i~~~~~i-~~~~i~~~~ig~~~~I~~~~i~~svig~~~~ig~~~~i~-~sii~~~~~~~~~~~~~--- 370 (415)
+.+.+.+.+.+++++.| +++.|+++.||++|+|+++.|.+|+||++|.||+++.|. +++|+++++|+.++.+.
T Consensus 283 i~~~~~i~~~~~ig~~~~I~~~~~i~~~~ig~~~~i~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~ 362 (468)
T 1hm9_A 283 IEANVILKGQTKIGAETVLTNGTYVVDSTIGAGAVITNSMIEESSVADGVTVGPYAHIRPNSSLGAQVHIGNFVEVKGSS 362 (468)
T ss_dssp ECSSCEEESSCEECTTCEECTTCEEESCEECTTCEECSCEEESCEECTTCEECSSCEECSSCEECTTCEEEEEEEEESCE
T ss_pred ECCCcEECCCCEECCCCEECCCCEEeccEEeCCcEEEEEEEeccccCCCcEECCceEEecCcEECCccEECCCcEEeeeE
Confidence 22223333444444444 455555666777777766666777777777777777777 56666666555443321
Q ss_pred ----------------------------------------hhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCccc
Q 014953 371 ----------------------------------------SLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSSTI 409 (415)
Q Consensus 371 ----------------------------------------~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~ 409 (415)
+.++++ |.||.||.|. ++.||+++.|++++.+.+.+
T Consensus 363 Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~~~~~~~~Ig~~---~~Ig~~~~i~~~v~Ig~~~~i~~~s~v~~~v 439 (468)
T 1hm9_A 363 IGENTKAGHLTYIGNCEVGSNVNFGAGTITVNYDGKNKYKTVIGDN---VFVGSNSTIIAPVELGDNSLVGAGSTITKDV 439 (468)
T ss_dssp ECTTCEEEEEEEEESEEECTTCEECTTCEEECBCSSCBCCEEECTT---CEECTTCEEESSCEECTTCEECTTCEECSCB
T ss_pred EcCCcEeCCceEEccccccCCcEECCCcEEecCcCccCCCcEECCC---eEECCCCEEeCCcEECCCCEECCCCEECCCC
Confidence 222333 4455555554 56777778888888777777
Q ss_pred ccccc
Q 014953 410 SRFSL 414 (415)
Q Consensus 410 ~~~~~ 414 (415)
.+++.
T Consensus 440 ~~~~~ 444 (468)
T 1hm9_A 440 PADAI 444 (468)
T ss_dssp CTTCE
T ss_pred CCCCE
Confidence 76654
|
| >4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-41 Score=338.14 Aligned_cols=353 Identities=16% Similarity=0.202 Sum_probs=244.4
Q ss_pred cceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccC
Q 014953 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (415)
++|.|||||||.|+||+| ++||+|+|++|+ |||+|++++|.++|+++|+|++++..+++.+++... +
T Consensus 7 ~~~~aiIlA~G~g~Rl~~---~~pK~l~~i~g~-pli~~~l~~l~~~~~~~i~vv~~~~~~~i~~~~~~~---------~ 73 (459)
T 4fce_A 7 SSMSVVILAAGKGTRMYS---DLPKVLHPLAGK-PMVQHVIDAAMKLGAQHVHLVYGHGGELLKKTLADP---------S 73 (459)
T ss_dssp CCEEEEEEECCCCGGGCC---SSCGGGSEETTE-EHHHHHHHHHHHHTCSCEEEEESSCHHHHHHHC-------------
T ss_pred CcceEEEECCCCCccCCC---CCCcccCeeCCe-eHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhccC---------C
Confidence 579999999999999996 789999999999 999999999999999999999999888887776421 1
Q ss_pred CceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe--ecccChHHHHHHHHHcCCcEEEEEE
Q 014953 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGADITISCL 164 (415)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~--i~~~~l~~~l~~h~~~~~~~ti~~~ 164 (415)
+.++... ...|++++++.++.++.+ .++|++++||. +...++.++++.|.+ .+++++..
T Consensus 74 ---~~~v~~~---------~~~g~~~~i~~~~~~~~~-----~~~~lv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~~ 134 (459)
T 4fce_A 74 ---LNWVLQA---------EQLGTGHAMQQAAPHFAD-----DEDILMLYGDVPLISVDTLQRLLAAKPE--GGIGLLTV 134 (459)
T ss_dssp ----CEEECS---------SCCCHHHHHHHHGGGSCT-----TSEEEEEETTCTTCCHHHHHHHHHHCCT--TSEEEEEE
T ss_pred ---cEEEeCC---------CCCCcHHHHHHHHHhcCC-----CCcEEEEeCCcccCCHHHHHHHHHHHhh--CCEEEEEE
Confidence 2222211 136999999999988853 48999999999 455668999998865 56677777
Q ss_pred EcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCC--
Q 014953 165 PMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP-- 242 (415)
Q Consensus 165 ~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~-- 242 (415)
+..+ +..|+.+..| ++++..+.|+|..... +..++++++|+|+|+++.|..+++....
T Consensus 135 ~~~~--~~~~g~v~~~-~g~v~~~~ek~~~~~~-----------------~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~ 194 (459)
T 4fce_A 135 KLDN--PSGYGRIVRE-NGDVVGIVEHKDASDA-----------------QREINEINTGILVANGRDLKRWLSLLDNNN 194 (459)
T ss_dssp ECSC--CTTSCEEEEE-TTEEEEEECGGGCCTT-----------------GGGCCEEEEEEEEEEHHHHHHHHHTCCCCS
T ss_pred ecCC--CCcccEEEeC-CCcEEEEEECCCCChH-----------------HhhccEEEEEEEEEEHHHHHHHHHHhCccc
Confidence 7665 5779988887 7899999998653221 0124789999999999988777665321
Q ss_pred -CCCcccccchhhhccc-ceEEEEEeCceE--EecCCHHHHHHHHHhhcCCC------CCCC------------------
Q 014953 243 -TANDFGSEIIPASANE-QFLKAYLFNDYW--EDIGTIRSFFEANLALTAHP------PMFS------------------ 294 (415)
Q Consensus 243 -~~~~~~~~~l~~l~~~-~~i~~~~~~g~~--~di~t~~~y~~an~~~l~~~------~~~~------------------ 294 (415)
....+..++++.++.. .+++++..+++| .+|+||+||..|+..+..+. ....
T Consensus 195 ~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~I~tp~Dl~~ae~~l~~~~~~~l~~~~~~~~~p~~~~~~~~~~ig~~ 274 (459)
T 4fce_A 195 AQGEFYITDIIALAHADGKKIATVHPTRLSEVEGVNNRLQLSALERVFQTEQAEKLLLAGVMLLDPSRFDLRGELTHGRD 274 (459)
T ss_dssp TTCSCCTTHHHHHHHHTTCCEEEECCSSGGGGCCCSSHHHHHHHHHHHHHHHHHHHHHHTCEESCGGGEEEEEEEEECSS
T ss_pred cCCcEEHHHHHHHHHHCCCeEEEEEcCCHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEEeCcEEECCC
Confidence 1233456777776664 689999999765 67999999999986554321 0111
Q ss_pred -ccCCCCCccccCccCCCeee-cCCccccceECCCCEEc-ceEEeeeEEccCcEECCCcEEe-ecEEeCCccccchhHH-
Q 014953 295 -FYDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLK-DTMMLGADFYETDAEV- 369 (415)
Q Consensus 295 -~~~~~~~~~~~~~i~~~~~i-~~~~i~~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~-~sii~~~~~~~~~~~~- 369 (415)
.+++.+.+...+.++.++.| +++.|.++.||++|.|+ ++.|.+++||++|.||++++|. ++++++++.|+.++.+
T Consensus 275 ~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~~~Ig~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~ 354 (459)
T 4fce_A 275 ITIDTNVIIEGHVILGDRVRIGTGCVLKNCVIGDDSEISPYTVLEDARLDANCTVGPFARLRPGAELAEGAHVGNFVEIK 354 (459)
T ss_dssp CEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECSSCEEESCEECTTCEECSSEEECTTCEECTTCEEEEEEEEE
T ss_pred cEECCCeeeccceEECCCCEECCCCEEeccEECCCCEECCCcEEeCCEECCCCEECCccEECCCcEECCCcEECCCeEEe
Confidence 11222222222333333444 44555566666677666 5666666666666666666665 4445444444443321
Q ss_pred ------------------------------------------HhhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccC
Q 014953 370 ------------------------------------------ASLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDS 406 (415)
Q Consensus 370 ------------------------------------------~~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~ 406 (415)
.+.|+++ |.||.|+.|. ++.||+++.|++++.+.
T Consensus 355 ~~~i~~~~~i~~~~~i~~~~Ig~~~~ig~~~~i~~~~~~~~~~v~Ig~~---~~IG~~~~I~~gv~Ig~~~~igagsvV~ 431 (459)
T 4fce_A 355 KARLGKGSKAGHLSYLGDAEIGAGVNIGAGTITCNYDGANKFKTIIGDD---VFVGSDTQLVAPVTVANGATIGAGTTVT 431 (459)
T ss_dssp EEEECTTCEEEEEEEEEEEEECTTCEECTTCEEECBCSSCBCCEEECTT---CEECTTCEEESSEEECTTCEECTTCEEC
T ss_pred eeEEcCCCEECCceEECCeEECCCCEECCCCEEeccccccCCCCEECCC---eEEcCCCEEcCCcEECCCCEECCCCEEc
Confidence 1233444 6666666666 78888888888888888
Q ss_pred cccccccc
Q 014953 407 STISRFSL 414 (415)
Q Consensus 407 ~~~~~~~~ 414 (415)
+.+.+++.
T Consensus 432 ~~v~~~~~ 439 (459)
T 4fce_A 432 RDVAENEL 439 (459)
T ss_dssp SCBCTTCE
T ss_pred cccCCCCE
Confidence 88877764
|
| >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-40 Score=331.43 Aligned_cols=307 Identities=17% Similarity=0.226 Sum_probs=207.8
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCccc
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (415)
++++.|||||||.|+||++ .+||+|+|++|+ |||+|++++|.++|+++++|+++++.+++.+++.+. +
T Consensus 3 ~~~~~aiIlA~G~g~Rl~~---~~pK~l~~i~gk-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~-----~--- 70 (456)
T 2v0h_A 3 KKALSAVILAAGKGTRMYS---DLPKVLHTIAGK-PMVKHVIDTAHQLGSENIHLIYGHGGDLMRTHLANE-----Q--- 70 (456)
T ss_dssp -CCEEEEEECCCCCGGGCS---SSCGGGSEETTE-EHHHHHHHHHHHTTCSCEEEEECTTHHHHHHHTTTC-----C---
T ss_pred CCcceEEEECCCCCcccCC---CCCccccEECCc-cHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhhcC-----C---
Confidence 3568999999999999984 689999999999 999999999999999999999999877777765321 1
Q ss_pred CCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe--ecccChHHHHHHHHHcCCcEEEEE
Q 014953 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGADITISC 163 (415)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~--i~~~~l~~~l~~h~~~~~~~ti~~ 163 (415)
++++.... ..|++++++.+++++.. .++|++++||. +...++.++++.|.+ ++++++.
T Consensus 71 ----~~~v~~~~---------~~g~~~~~~~~~~~~~~-----~~~vlv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~ 130 (456)
T 2v0h_A 71 ----VNWVLQTE---------QLGTAHAVQQAAPFFKD-----NENIVVLYGDAPLITKETLEKLIEAKPE--NGIALLT 130 (456)
T ss_dssp ----CEEEECSC---------CCCHHHHHHHHGGGCCT-----TSEEEEEETTCTTCCHHHHHHHHHHCCT--TSEEEEE
T ss_pred ----cEEEeCCC---------CCCcHHHHHHHHHhcCC-----CCeEEEEcCCcceeCHHHHHHHHHHHhc--CCEEEEE
Confidence 22322111 26999999999988753 47999999999 445678999998866 5778877
Q ss_pred EEcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC
Q 014953 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (415)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~ 243 (415)
.+.++ +..|+.+..| ++++..+.|++..... + ...+++++|+|+|+++.|.+.++.....
T Consensus 131 ~~~~~--~~~~g~v~~~-~g~v~~~~ek~~~~~~---------------~--~~~~~~~~Giy~~~~~~l~~~l~~~~~~ 190 (456)
T 2v0h_A 131 VNLDN--PTGYGRIIRE-NGNVVAIVEQKDANAE---------------Q--LNIKEVNTGVMVSDGASFKKWLARVGNN 190 (456)
T ss_dssp EECSS--CTTSCEEEEE-TTEEEEEECTTTCCHH---------------H--HTCCEEEEEEEEEEHHHHHHHHTTCCCC
T ss_pred eecCC--CCccceEEEc-CCcEEEEEECCCCChh---------------H--hcCcEEEEEEEEEEHHHHHHHHHHhccc
Confidence 77665 5678888887 7899999998763210 0 0236889999999999776666543221
Q ss_pred ---CCcccccchhhhccc-ceEEEEEeCce--EEecCCHHHHHHHHHhhcCCC------CCCCccCC-CCCccccCccCC
Q 014953 244 ---ANDFGSEIIPASANE-QFLKAYLFNDY--WEDIGTIRSFFEANLALTAHP------PMFSFYDA-TKPIYTSRRNLP 310 (415)
Q Consensus 244 ---~~~~~~~~l~~l~~~-~~i~~~~~~g~--~~di~t~~~y~~an~~~l~~~------~~~~~~~~-~~~~~~~~~i~~ 310 (415)
...+..++++.++.. .++.++..+++ |.+|+||+||.+|++.+..+. .....+++ ...+.+.+.+++
T Consensus 191 ~~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~I~tpeDl~~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig~ 270 (456)
T 2v0h_A 191 NAQGEYYLTDLIALANQDNCQVVAVQATDVMEVEGANNRLQLAALERYFQNKQASKLLLEGVMIYDPARFDLRGTLEHGK 270 (456)
T ss_dssp STTCCCCGGGHHHHHHHTTCCEEEEECSCTGGGCCCSSHHHHHHHHHHHHHHHHHHHHHTTCEESCGGGEEEEEEEEECS
T ss_pred cccccEEHHHHHHHHHHcCCEEEEEEeCCcceEEeCCCHHHHHHHHHHHHHHHHHHHHHcCCEEECCCccEEcCceEECC
Confidence 123346777776664 58999999765 579999999999998665321 11122222 122333344444
Q ss_pred Ceee-cCCcc-ccceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCcccc
Q 014953 311 PSKI-DDSKI-VDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYE 364 (415)
Q Consensus 311 ~~~i-~~~~i-~~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~ 364 (415)
++.| +++.| .++.||++|.|+ ++.|.+|+||++|.|++++.|.+++|++++.|+
T Consensus 271 ~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~I~ 327 (456)
T 2v0h_A 271 DVEIDVNVIIEGNVKLGDRVKIGTGCVLKNVVIGNDVEIKPYSVLEDSIVGEKAAIG 327 (456)
T ss_dssp SCEECSSEEEEEEEEECTTCEECTTCEEEEEEECTTCEECSSCEEEEEEECTTCEEC
T ss_pred CCEEcCCcEEcCCcEECCCCEECCCCEEEeEEEeCCCEEcCCeEEccCcCCCCcEEC
Confidence 4444 33333 244555555555 455555555555555555554444444444433
|
| >3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-37 Score=286.59 Aligned_cols=244 Identities=20% Similarity=0.296 Sum_probs=194.1
Q ss_pred ceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcc---
Q 014953 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVT--- 84 (415)
Q Consensus 8 ~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~--- 84 (415)
.|+|||||||.|+||+|+|..+||+|+||+|+ |||+|+++++.++|+++|+|+++++.+++.+|+...+.+.....
T Consensus 2 ~~~avIlAaG~gtRl~plt~~~pK~ll~i~gk-pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~~~ 80 (281)
T 3juk_A 2 IKKCLFPAAGYGTRFLPITKTIPKEMLPIVDK-PLIQYAVEEAMEAGCEVMAIVTGRNKRSLEDYFDTSYEIEHQIQGTN 80 (281)
T ss_dssp CCEEEEECCSCCGGGTTGGGTSCGGGCBSSSS-BHHHHHHHHHHHHTCCEEEEEECTTHHHHHHHTSCCC--------CC
T ss_pred ceEEEEECCcCCcccCccccCCCcccceECCE-EHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHhcchhhhhhhhccc
Confidence 57999999999999999999999999999999 99999999999999999999999999999988754321111000
Q ss_pred ------------cCCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-----hHH
Q 014953 85 ------------FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-----YMD 147 (415)
Q Consensus 85 ------------~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-----l~~ 147 (415)
++. .+.++. +. ++.||+++++.++.++. .++|+|++||++++.+ +.+
T Consensus 81 ~~~~~~~~~~~~~~~-~i~~~~--~~-------~~~Gt~~al~~a~~~l~------~~~~lv~~~D~~~~~~~~~~~l~~ 144 (281)
T 3juk_A 81 KENALKSIRNIIEKC-CFSYVR--QK-------QMKGLGHAILTGEALIG------NEPFAVILADDLCISHDHPSVLKQ 144 (281)
T ss_dssp HHHHHHHHHHHHHHC-EEEEEE--CS-------SCCCHHHHHHHTHHHHC------SSCEEEECTTEEEECTTSCCHHHH
T ss_pred chhhhhhhhccccCc-cEEEEe--cC-------CCCCcHHHHHHHHHHcC------CCCEEEEeCCeeccCccchHHHHH
Confidence 111 122222 21 23699999999999885 3789999999999998 999
Q ss_pred HHHHHHHcCCcEEEEEEEcCCCcCCcccEEEECC--CC--CeEEEEEcCCcccccccccccccccccccccccccceeee
Q 014953 148 FVQNHRQSGADITISCLPMDDSRASDFGLMKINN--EG--RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASM 223 (415)
Q Consensus 148 ~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d~--~~--~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 223 (415)
+++.|.+.++ .++++...+...+.+||++..|+ +| +|..+.|||..... .++++++
T Consensus 145 l~~~~~~~~~-~~v~~~~~~~~~~~~~g~v~~~~~~~g~~~v~~~~Ekp~~~~~-------------------~~~~~~~ 204 (281)
T 3juk_A 145 MTSLYQKYQC-SIVAIEEVALEEVSKYGVIRGEWLEEGVYEIKDMVEKPNQEDA-------------------PSNLAVI 204 (281)
T ss_dssp HHHHHHHHCS-CEEEEEECCTTTGGGSEEEEEEEEETTEEEEEEEEESCCTTTC-------------------SCSEEEE
T ss_pred HHHHHHHcCC-CEEEEEEechhhcccCCEEEeccCCCCceEEeEEEECcCCCCC-------------------CcceeEE
Confidence 9999998877 67777777555578899999986 77 99999999974321 2478899
Q ss_pred eEEEEeHHHHHHHHhhhCCC--CCcccccchhhhcccceEEEEEeCceEEecCCHHHHHHHHHhhcCC
Q 014953 224 GVYLFKKEILLNLLRWRFPT--ANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAH 289 (415)
Q Consensus 224 Giyi~~~~~l~~~l~~~~~~--~~~~~~~~l~~l~~~~~i~~~~~~g~~~di~t~~~y~~an~~~l~~ 289 (415)
|+|+|++++|. .++...+. ......++++.++.++++++|.++|+|.|||||++|.+|++.+++.
T Consensus 205 GiYi~~~~~l~-~l~~~~~~~~~e~~l~d~i~~l~~~~~v~~~~~~g~~~dIgt~~d~~~a~~~l~~~ 271 (281)
T 3juk_A 205 GRYILTPDIFE-ILSETKPGKNNEIQITDALRTQAKRKRIIAYQFKGKRYDCGSVEGYIEASNAYYKK 271 (281)
T ss_dssp EEEEECTTHHH-HHHTCCCCGGGSCCHHHHHHHHHHHSCCEEEECCSEEEETTSHHHHHHHHHHHHHH
T ss_pred EEEEECHHHHH-HHHhcCCCCCCceeHHHHHHHHHhcCCEEEEEeCCeEEcCCCHHHHHHHHHHHHhc
Confidence 99999999985 45543211 1122367888888888999999999999999999999999998854
|
| >4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-35 Score=270.65 Aligned_cols=237 Identities=22% Similarity=0.366 Sum_probs=191.9
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccCh-hHHHHHHHhhccCCCCcc
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNS-ASLNRHLARAYNYGSGVT 84 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~-~~i~~~l~~~~~~~~~~~ 84 (415)
.+.|+|||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|++++.+ +++.+++.. +..
T Consensus 22 ~~~m~aiIlAaG~g~Rl~~lt~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~iivv~~~~~~~~~~~~~~~------~~~ 94 (269)
T 4ecm_A 22 SNAMKGIILAGGTGSRLYPITKVTNKHLLPVGRY-PMIYHAVYKLKQCDITDIMIITGKEHMGDVVSFLGS------GQE 94 (269)
T ss_dssp --CEEEEEECCSCCGGGTTTTSSSCGGGSEETTE-EHHHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTT------SGG
T ss_pred ccCcEEEEECCCCccccccccCCCCceecEECCE-EHHHHHHHHHHHCCCCEEEEECChhhHHHHHHHHhh------ccc
Confidence 3568999999999999999999999999999999 99999999999999999999999754 677777643 223
Q ss_pred cCCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEE
Q 014953 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCL 164 (415)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~ 164 (415)
|+.. +.+.. +. ...|++++++.++.++. .++|++++||++++.++.++++.|+++++++++++.
T Consensus 95 ~~~~-i~~~~--~~-------~~~G~~~al~~a~~~~~------~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~~~~~~ 158 (269)
T 4ecm_A 95 FGVS-FTYRV--QD-------KAGGIAQALGLCEDFVG------NDRMVVILGDNIFSDDIRPYVEEFTNQKEGAKVLLQ 158 (269)
T ss_dssp GTCE-EEEEE--CS-------SCCCHHHHHHTTHHHHT------TSEEEEEETTEEESSCSHHHHHHHHTSSSSEEEEEE
T ss_pred cCce-EEEee--CC-------ccCcHHHHHHHHHHhcC------CCcEEEEeCCccCccCHHHHHHHHHhcCCCeEEEEE
Confidence 3322 22221 11 13699999999998885 489999999999998999999999998999999998
Q ss_pred EcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC-
Q 014953 165 PMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT- 243 (415)
Q Consensus 165 ~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~- 243 (415)
+.++ +..|+++..| +|+|..+.|||..+. ++++++|+|+|++++|. .++...+.
T Consensus 159 ~~~~--~~~~g~v~~d-~g~v~~~~ekp~~~~---------------------~~~~~~Giy~~~~~~l~-~l~~~~~~~ 213 (269)
T 4ecm_A 159 SVDD--PERFGVANIQ-NRKIIEIEEKPKEPK---------------------SSYAVTGIYLYDSKVFS-YIKELKPSA 213 (269)
T ss_dssp ECSC--GGGSEEEEEE-TTEEEEEEESCSSCS---------------------CSEEEEEEEEECTTHHH-HHTSCCBCT
T ss_pred ECCC--CCCceEEEEc-CCEEEEEEECCCCCC---------------------CcEEEEEEEEECHHHHH-hhhhcCCCC
Confidence 8776 5789999987 489999999986432 36889999999999885 44433211
Q ss_pred CC-cccccchhhhcccceEEEEEeCceEEecCCHHHHHHHHHhhcCCC
Q 014953 244 AN-DFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHP 290 (415)
Q Consensus 244 ~~-~~~~~~l~~l~~~~~i~~~~~~g~~~di~t~~~y~~an~~~l~~~ 290 (415)
.. ....++++.++..+++.++..+++|.||+||++|.+|++.+++..
T Consensus 214 ~ge~~l~d~l~~l~~~g~v~~~~~~~~~~dIgt~~dl~~a~~~l~~~~ 261 (269)
T 4ecm_A 214 RGELEITDINNWYLKRGVLTYNEMSGWWTDAGTHVSLQRANALARDIN 261 (269)
T ss_dssp TSCBCHHHHHHHHHHTTCEEEEECCSCEEECSSHHHHHHHHHHTTTCC
T ss_pred CCeeeHHHHHHHHHHcCCEEEEEeCCEEEeCCCHHHHHHHHHHHHhcc
Confidence 11 224678888888889999999999999999999999999987654
|
| >1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-34 Score=261.09 Aligned_cols=246 Identities=25% Similarity=0.332 Sum_probs=180.2
Q ss_pred ceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCccc--
Q 014953 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF-- 85 (415)
Q Consensus 8 ~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~-- 85 (415)
+|+|||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|++++..+++.+++.+....+.+..+
T Consensus 2 ~~~avIlAaG~gtRl~~lt~~~pK~l~~i~gk-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~~~ 80 (259)
T 1tzf_A 2 ASKAVILAGGLGTRLSEETIVKPKPMVEIGGK-PILWHIMKMYSVHGIKDFIICCGYKGYVIKEYFANYFLHMSDVTFHM 80 (259)
T ss_dssp CCEEEEEECSCC--------CCCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECTTHHHHHHHHHTHHHHHSCEEEEG
T ss_pred CcEEEEECCCCcccCCCccCCCCccccEECCE-EHHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHhhcccccccccccc
Confidence 48899999999999999999999999999999 999999999999999999999999988999988653200001111
Q ss_pred CCceEEEecCccCCCC---CCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEE
Q 014953 86 GDGCVEVLAATQTPGE---AGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITIS 162 (415)
Q Consensus 86 ~~~~v~i~~~~~~~~~---~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~ 162 (415)
+...++++.....+-. ..+....||+++++.++.++.. .++|++++||.+++.++.++++.|.+.++.+|+.
T Consensus 81 ~~~~~~~~~~~~~~~~v~~~~~~~~~gt~~al~~a~~~~~~-----~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~t~~ 155 (259)
T 1tzf_A 81 AENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVKD-----DEAFLFTYGDGVADLDIKATIDFHKAHGKKATLT 155 (259)
T ss_dssp GGTEEEETTCCCCCCEEEEEECCSSCCHHHHHHHTGGGTTT-----SSCEEEEETTEEECCCHHHHHHHHHHHCCSEEEE
T ss_pred cccceeeeeccccccceeeeecccccCcHHHHHHHHHhcCC-----CCcEEEEECCEecccCHHHHHHHHHHhCCeEEEE
Confidence 0001222211000000 0001136999999999988842 4789999999999999999999999888887775
Q ss_pred EEEcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCC
Q 014953 163 CLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP 242 (415)
Q Consensus 163 ~~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~ 242 (415)
..+ . +..|+++.+| +|+|..|.|||... .+++++|+|+|++++|. .++.
T Consensus 156 ~~~--~--~~~~g~v~~~-~g~v~~~~ekp~~~----------------------~~~~~~Giy~~~~~~l~-~l~~--- 204 (259)
T 1tzf_A 156 ATF--P--PGRFGALDIQ-AGQVRSFQEKPKGD----------------------GAMINGGFFVLNPSVID-LIDN--- 204 (259)
T ss_dssp EEC--C--CCCSEEEEEE-TTEEEEEEESCSCC----------------------SCCEECCCEEECGGGGG-GCCS---
T ss_pred Eec--C--CCCccEEEEc-CCEEEEEEecCCCC----------------------CceEEEEEEEeCHHHHH-hhcc---
Confidence 433 2 4679988888 78999999988642 25789999999999884 3322
Q ss_pred CCCcccccchhhhcccceEEEEEeCceEEecCCHHHHHHHHHhhcCCC
Q 014953 243 TANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHP 290 (415)
Q Consensus 243 ~~~~~~~~~l~~l~~~~~i~~~~~~g~~~di~t~~~y~~an~~~l~~~ 290 (415)
...++..++++.++++++++++.++++|.||||++||.+|++.+++..
T Consensus 205 ~~~~~~~~~i~~~~~~~~v~~~~~~~~~~dI~t~~d~~~a~~~~~~~~ 252 (259)
T 1tzf_A 205 DATTWEQEPLMTLAQQGELMAFEHPGFWQPMDTLRDKVYLEGLWEKGK 252 (259)
T ss_dssp TTCCTTTHHHHHHHHTTCEEEEEECSCEEECCSHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHcCCEEEEEeCcEEEeCCCHHHHHHHHHHHhcCC
Confidence 123455778888887789999999999999999999999999887643
|
| >2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-34 Score=266.80 Aligned_cols=243 Identities=21% Similarity=0.323 Sum_probs=186.6
Q ss_pred cceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCC-----C
Q 014953 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYG-----S 81 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~-----~ 81 (415)
+.|+|||||||.|+||+|+|..+||+|+||+|+ |||+|+++++.++|+++|+|++++..+++.+|+...+.+. .
T Consensus 7 ~~~~avIlAaG~gtRl~plt~~~pK~ll~i~gk-pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~~ 85 (302)
T 2e3d_A 7 KVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDK-PLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEKR 85 (302)
T ss_dssp SCCEEEEECCSCCGGGTTTTSSSCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECGGGHHHHHHHSCCHHHHHHHC--
T ss_pred cccEEEEECCcCcccCCccccCCCceeeEECCe-EHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHhcchhhhhhhhhc
Confidence 468999999999999999999999999999999 9999999999999999999999998889988885421000 0
Q ss_pred C-c----------ccCCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecc-----c--
Q 014953 82 G-V----------TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYR-----M-- 143 (415)
Q Consensus 82 ~-~----------~~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~-----~-- 143 (415)
+ . .++. .+.++... +..||+++++.++.++. .++|+|++||++++ .
T Consensus 86 ~~~~~l~~~~~~~~~~~-~i~~~~~~---------~~~Gt~~al~~a~~~~~------~~~~lv~~~D~~~~~~~~~~~~ 149 (302)
T 2e3d_A 86 VKRQLLDEVQSICPPHV-TIMQVRQG---------LAKGLGHAVLCAHPVVG------DEPVAVILPDVILDEYESDLSQ 149 (302)
T ss_dssp --CHHHHHHHHTSCTTC-EEEEEECS---------SCCCHHHHHHHTHHHHC------SSCEEEECTTEEECTTSSCTTT
T ss_pred cchhhhhhhhhccccCc-ceEEeeCC---------ccCCHHHHHHHHHHHcC------CCcEEEEcCCccccCccccchH
Confidence 0 0 0011 12232211 23699999999999885 37899999999877 2
Q ss_pred -ChHHHHHHHHHcCCcEEEEEEEcCCCcCCcccEEEEC----CCC---CeEEEEEcCCcccccccccccccccccccccc
Q 014953 144 -DYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN----NEG---RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAE 215 (415)
Q Consensus 144 -~l~~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d----~~~---~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~ 215 (415)
++.++++.|++.++ .++++.+..+ +..||++..+ ++| +|..|.|||.....
T Consensus 150 ~~l~~l~~~~~~~~~-~~i~~~~~~~--~~~yg~v~~~~~~~~~g~~~~v~~~~ekp~~~~~------------------ 208 (302)
T 2e3d_A 150 DNLAEMIRRFDETGH-SQIMVEPVAD--VTAYGVVDCKGVELAPGESVPMVGVVEKPKADVA------------------ 208 (302)
T ss_dssp STHHHHHHHHHHHCC-EEEEEEECSC--GGGSEEEECTTCCCCTTCEEEECEEEESCCTTTC------------------
T ss_pred HHHHHHHHHHHhcCC-cEEEEEEccC--CCCccEEEecccccCCCCceeEEEEEECCCCCcc------------------
Confidence 79999999988776 7777777643 5789988864 456 89999999864221
Q ss_pred cccceeeeeEEEEeHHHHHHHHhhhCCC--CCcccccchhhhcccceEEEEEeCceEEecCCHHHHHHHHHhhcCC
Q 014953 216 EKPYIASMGVYLFKKEILLNLLRWRFPT--ANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAH 289 (415)
Q Consensus 216 ~~~~l~~~Giyi~~~~~l~~~l~~~~~~--~~~~~~~~l~~l~~~~~i~~~~~~g~~~di~t~~~y~~an~~~l~~ 289 (415)
.++++++|+|+|++++|. .++...+. ...+..++++.+++++++.++.++++|.|||||++|.+|++.++..
T Consensus 209 -~~~~~~~Giyi~~~~~l~-~l~~~~~~~~~~~~l~d~i~~l~~~~~v~~~~~~~~~~DIgt~~d~~~a~~~~~~~ 282 (302)
T 2e3d_A 209 -PSNLAIVGRYVLSADIWP-LLAKTPPGAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYGIR 282 (302)
T ss_dssp -SCSEEEEEEEEECTTHHH-HHTCCCC----CCCHHHHHHHHHHHSCEEEEECCSCEEECSSHHHHHHHHHHHHHH
T ss_pred -ccceEEEEEEEECHHHHH-HHHhhCCCCCCceehHHHHHHHHHhCCEEEEEeCCeEEcCCCHHHHHHHHHHHHhc
Confidence 246889999999999885 44443221 1122357778777767999999999999999999999999766543
|
| >2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=265.56 Aligned_cols=248 Identities=20% Similarity=0.243 Sum_probs=172.5
Q ss_pred cccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccC-----
Q 014953 5 DARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNY----- 79 (415)
Q Consensus 5 ~~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~----- 79 (415)
....|+|||||||.|+||+|+|..+||+|+||+|+ |||+|+++++.++|+++|+|++++..+++.+++...+.+
T Consensus 11 ~~~~~~avIlAaG~gtRl~plt~~~pK~ll~i~gk-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~l~~~l~ 89 (297)
T 2ux8_A 11 IKPLRKAVFPVAGLGTRFLPATKAMPKEMLPVVDR-PLIQYAVDEAVEAGIEQMIFVTGRGKSALEDHFDIAYELEATMA 89 (297)
T ss_dssp CCCCCEEEEEECCCCGGGTTTTSSSCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHTSCCHHHHHHHH
T ss_pred ccCccEEEEECCCCccccCccccCCCceeeeECCe-EHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhhhhhhhhhh
Confidence 45669999999999999999999999999999999 999999999999999999999999888888887532100
Q ss_pred CCCc---------ccCCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecc---cChHH
Q 014953 80 GSGV---------TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYR---MDYMD 147 (415)
Q Consensus 80 ~~~~---------~~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~---~~l~~ 147 (415)
..+. .++. .+.++... +..||+++++.++.++. .++|+|++||++++ .++.+
T Consensus 90 ~~~~~~~~~~~~~~~g~-~i~~~~~~---------~~~Gt~~al~~a~~~~~------~~~~lv~~~D~~~~~~~~~l~~ 153 (297)
T 2ux8_A 90 ARGKSLDVLDGTRLKPG-NIAYVRQQ---------EPMGLGHAVWCARDIVG------DEPFAVLLPDDFMFGQPGCLKQ 153 (297)
T ss_dssp TTTCCGGGGTTSCCSTT-SEEEEECC---------SCCCHHHHHHTTHHHHC------SSCEEEECTTEEEESSSCHHHH
T ss_pred hccchhhhhhhcccCCC-ceEEEeCC---------CCCChHHHHHHHHHHcC------CCcEEEEeCCeecCCChHHHHH
Confidence 0000 0111 13333211 13699999999998885 37999999999887 45899
Q ss_pred HHHHHHHcCCcEEEEEEEcCCCcCCcccEEEECC--CC--CeEEEEEcCCcccccccccccccccccccccccccceeee
Q 014953 148 FVQNHRQSGADITISCLPMDDSRASDFGLMKINN--EG--RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASM 223 (415)
Q Consensus 148 ~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d~--~~--~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 223 (415)
+++.|++.++ .++++.+.+...+..||++..++ ++ +|..|.|||..... .++++++
T Consensus 154 l~~~~~~~~~-~~i~~~~~~~~~~~~yg~v~~~~~~~~~~~v~~~~ekp~~~~~-------------------~~~~~~~ 213 (297)
T 2ux8_A 154 MVDAYNKVGG-NLICAEEVPDDQTHRYGIITPGTQDGVLTEVKGLVEKPAPGTA-------------------PSNLSVI 213 (297)
T ss_dssp HHHHHHHHCS-EEEEEC-----------CCCCCCBCSSEEEC---------------------------------CCCEE
T ss_pred HHHHHHhcCC-CEEEEEecCcccCCCCCeEEecccCCCceeEEEEEECCCCCCC-------------------CccEEEE
Confidence 9999988775 56766665433357798887663 45 89999999863211 1367899
Q ss_pred eEEEEeHHHHHHHHhhhCCC--CCcccccchhhhcccceEEEEEeCceEEecCCHHHHHHHHHhhcCCC
Q 014953 224 GVYLFKKEILLNLLRWRFPT--ANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHP 290 (415)
Q Consensus 224 Giyi~~~~~l~~~l~~~~~~--~~~~~~~~l~~l~~~~~i~~~~~~g~~~di~t~~~y~~an~~~l~~~ 290 (415)
|+|+|++++|. .++...+. ......++++.++++++++++.++++|.|||||++|.+|++.++...
T Consensus 214 Giyi~~~~~l~-~l~~~~~~~~~~~~l~d~i~~l~~~~~v~~~~~~~~w~dIgt~~dl~~a~~~~~~~~ 281 (297)
T 2ux8_A 214 GRYILQPEVMR-ILENQGKGAGGEIQLTDAMQRMIGDQPFHGVTFQGTRYDCGDKAGFIQANLAVALSR 281 (297)
T ss_dssp EEEEECTHHHH-HHHHTC--------CCTTGGGGTTTSCEEEEECSSEEEETTSHHHHHHHHHHHHHHC
T ss_pred EEEEECHHHHH-HHHhhCCCCCCeeEHHHHHHHHHhcCCEEEEEecceEEeCCCHHHHHHHHHHHHhcC
Confidence 99999999875 44443221 11224678888888889999999999999999999999998877543
|
| >3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-33 Score=263.62 Aligned_cols=256 Identities=13% Similarity=0.157 Sum_probs=186.9
Q ss_pred cccceEEEEEcCCCCCcccccccCCcccceee--CCcceeehhehhhhhccCCcEEEEEcccCh-hHHHHHHHhhccCCC
Q 014953 5 DARTVAAVILGGGAGTRLYPLTKQRAKPAVPI--GGAYRLIDVPMSNCINSGINKVYILTQYNS-ASLNRHLARAYNYGS 81 (415)
Q Consensus 5 ~~~~~~aVILAaG~g~Rl~plt~~~pK~llpv--~g~~pli~~~l~~l~~~gi~~I~vv~~~~~-~~i~~~l~~~~~~~~ 81 (415)
+|++|+|||||||.|+||+| ||+|+|+ +|+ |||+|+++++.++|+++|+|++++.. +.+.+|+...+..+.
T Consensus 2 ~~m~~~~vIlAaG~g~R~~~-----~K~l~~ig~~g~-pli~~~l~~~~~~~~~~i~vv~~~~~~~~~~~~~~~~~~~~~ 75 (303)
T 3pnn_A 2 NAMKPTLFVLAAGMGSRYGS-----LKQLDGIGPGGD-TIMDYSVYDAIRAGFGRLVFVIRHSFEKEFREKILTKYEGRI 75 (303)
T ss_dssp -CCCCEEEEECTTCBCTTSS-----BCCCCCCSTTSC-CHHHHHHHHHHHHTCCEEEEEECGGGHHHHHHHTHHHHTTTS
T ss_pred CCCceEEEEECCCCcccCCC-----CceEeEcCCCCe-eHHHHHHHHHHHCCCCeEEEEcCchHHHHHHHHHHHHhccCC
Confidence 46678999999999999997 7999999 599 99999999999999999999999995 889999875442211
Q ss_pred CcccCCceEEEecCccC------CCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHHHH
Q 014953 82 GVTFGDGCVEVLAATQT------PGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQ 154 (415)
Q Consensus 82 ~~~~~~~~v~i~~~~~~------~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h~~ 154 (415)
. +.++..... ........++||++|++.+++++ .++|+|++||.+++.+ +.+++++|.+
T Consensus 76 ------~-i~~~~~~~~~~~~~~~~~~~~~~~~Gt~~al~~a~~~i-------~~~~lV~~gD~l~~~~~~~~l~~~~~~ 141 (303)
T 3pnn_A 76 ------P-VELVFQELDRLPEGFSCPEGREKPWGTNHAVLMGRDAI-------REPFAVINADDFYGRNGFEVLARKLMT 141 (303)
T ss_dssp ------C-EEEEECCTTCCCTTCCCCTTCCSCCCHHHHHHTTTTTC-------CSCEEEEESSCBCCHHHHHHHHHHHHT
T ss_pred ------c-EEEEecccccccccccccccccccCCcHHHHHHHHHhc-------CCCEEEEECCeecCHHHHHHHHHHHHH
Confidence 1 222211100 00000012479999999999887 3789999999999887 8999999986
Q ss_pred ---cCCcEEEEEEEcCCCcCCcc-----cEEEECCCCCeEEEEEcCCcccccc-ccccccccccccccc----cccccee
Q 014953 155 ---SGADITISCLPMDDSRASDF-----GLMKINNEGRVLSFSEKPKGKDLKA-MAVDTTVLGLSKQEA----EEKPYIA 221 (415)
Q Consensus 155 ---~~~~~ti~~~~~~~~~~~~~-----g~v~~d~~~~v~~~~ek~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~l~ 221 (415)
.++++++++.+.+++ .++| |++.+|++|+|+.|.|||....... ... ...+. ...++++
T Consensus 142 ~~~~~~~~~v~~~~~~~~-~~~~g~~~~G~v~~d~~g~v~~i~Ekp~~~~~~~~~~~-------~~~~g~~~~~~~~~~i 213 (303)
T 3pnn_A 142 LEGKQGEYCMVGYRVGNT-LSESGGVSRGVCQVDEKHLLTGVVERTGIERTDGTISF-------RDETGKICTLAEDAPV 213 (303)
T ss_dssp TTTCSSEEEEEEEEGGGS-CBTTBCEEEEEEEECTTSBEEEEEEEEEEEEETTEEEE-------ECTTSCEEEECTTCEE
T ss_pred hccccCceEEEEEECCCc-cCccCceeeeeEeeCCCCcEEEEEECCCCccccccccc-------cccccccccCCCCCEE
Confidence 567899998887652 1455 6888988899999999987531000 000 00000 0125789
Q ss_pred eeeEEEEeHHHHHHHHhh-------hC--CCCCcccccchhhhcccc--eEEEEEeCceEEecCCHHHHHHHHHhhcC
Q 014953 222 SMGVYLFKKEILLNLLRW-------RF--PTANDFGSEIIPASANEQ--FLKAYLFNDYWEDIGTIRSFFEANLALTA 288 (415)
Q Consensus 222 ~~Giyi~~~~~l~~~l~~-------~~--~~~~~~~~~~l~~l~~~~--~i~~~~~~g~~~di~t~~~y~~an~~~l~ 288 (415)
++|+|+|++++|..+.+. .. .....+..++++.+++.+ ++.+|.++|+|.|||||++|.+|++.+.+
T Consensus 214 ~~GiY~f~~~~~~~l~~~~~~~l~~~~~~~~~e~~l~d~i~~li~~g~~~v~~~~~~g~w~dIgt~~dl~~a~~~l~~ 291 (303)
T 3pnn_A 214 SMNMWGFTPDYFDYSEELFINFLNAHGQEPKSEFFIPFVVNDLIRSGRASVEVLDTTARWFGVTYSDDRPGVVAKLRE 291 (303)
T ss_dssp EEEEEEECTHHHHHHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHTSCEEEEEECSCCCBCCSSGGGHHHHHHHHHH
T ss_pred EEEEEEECHHHHHHHHHHHHHHHHhcCCCcCCcEEhHHHHHHHHHcCCCcEEEEEeCCceECCCCHHHHHHHHHHHHH
Confidence 999999999998644320 11 112234567888888776 79999999999999999999999987754
|
| >2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-33 Score=262.04 Aligned_cols=248 Identities=20% Similarity=0.250 Sum_probs=185.3
Q ss_pred cceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCC-----C
Q 014953 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYG-----S 81 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~-----~ 81 (415)
+.|+|||||||.|+||+|+|..+||+|+||+|+ |||+|+++++.++|+++|+|++++..+++.+|+...+.+. .
T Consensus 11 ~~~~aVIlAaG~gtRl~plt~~~pK~ll~i~gk-pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~~~~~~~l~~~ 89 (323)
T 2pa4_A 11 AVKTVVVPAAGLGTRFLPATKTVPKELLPVVDT-PGIELIAAEAAELGATRLAIITAPNKAGVLAHFERSSELEETLMER 89 (323)
T ss_dssp -CCEEEEECCCCCGGGTTGGGTSCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECTTCHHHHHTTSCCHHHHHHHHHT
T ss_pred cceEEEEECCCCccccCccccCCCceeeeECCE-EHHHHHHHHHHhCCCCEEEEEecCcHHHHHHHHhccchhhhhhhcc
Confidence 458999999999999999999999999999999 9999999999999999999999998888887764211000 0
Q ss_pred C--------cc--cCCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecc--cChHHHH
Q 014953 82 G--------VT--FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYR--MDYMDFV 149 (415)
Q Consensus 82 ~--------~~--~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~--~~l~~~l 149 (415)
+ .. ++. .+.++. +. +..||+++++.++.++.+ ..+.|+|++||++++ .++..++
T Consensus 90 ~~~~~~~~~~~~~~g~-~i~~~~--~~-------~~~Gt~~al~~a~~~l~~----~~d~~lv~~~D~~~~~~~~l~~l~ 155 (323)
T 2pa4_A 90 GKTDQVEIIRRAADLI-KAVPVT--QD-------KPLGLGHAVGLAESVLDD----DEDVVAVMLPDDLVLPTGVMERMA 155 (323)
T ss_dssp TCHHHHHHTTHHHHHC-EEEEEE--CS-------SCCCHHHHHHTTGGGSCS----SCCEEEEECTTEEEESSCHHHHHH
T ss_pred chhhhhhhhhccccCc-ceEEEe--CC-------ccCCcHHHHHHHHHHhcC----CCCeEEEEeCCcccCchHHHHHHH
Confidence 0 00 111 133332 11 136999999999988752 023499999999887 4589999
Q ss_pred HHHHHcCCcEEEEEEEcCCCcCCcccEEEEC----CCC--CeEEEEEcCCcccccccccccccccccccccccccceeee
Q 014953 150 QNHRQSGADITISCLPMDDSRASDFGLMKIN----NEG--RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASM 223 (415)
Q Consensus 150 ~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d----~~~--~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 223 (415)
+.|.+.++ .++++.+.+...+..||.+..| +++ +|..|.|||..... .+++.++
T Consensus 156 ~~~~~~~~-~~i~~~~~~~~~~~~yg~v~~d~~~~~~~~~~V~~~~Ekp~~~~~-------------------~~~~~~~ 215 (323)
T 2pa4_A 156 QVRAEFGG-SVLCAVEVSEADVSKYGIFEIEADTKDSDVKKVKGMVEKPAIEDA-------------------PSRLAAT 215 (323)
T ss_dssp HHHHTTCS-EEEEEEECCGGGGGGSEEEEEEECCSSTTEEEEEEEEESCCTTTC-------------------SCSEEEE
T ss_pred HHHHhcCC-cEEEEEEecccccCCccEEEeCCcccCCCceeEEEEEECCCCccc-------------------cccEEEE
Confidence 99987765 5677766654346789998876 454 89999999864221 2468899
Q ss_pred eEEEEeHHHHHHHHhhhCCC--CCcccccchhhhccc-ceEEEEEeCceEEecCCHHHHHHHHHhhcCCC
Q 014953 224 GVYLFKKEILLNLLRWRFPT--ANDFGSEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEANLALTAHP 290 (415)
Q Consensus 224 Giyi~~~~~l~~~l~~~~~~--~~~~~~~~l~~l~~~-~~i~~~~~~g~~~di~t~~~y~~an~~~l~~~ 290 (415)
|+|+|++++|. .++...+. ......++++.+++. .++.++.++++|.|||||+||.+|++.++...
T Consensus 216 GiY~~~~~~~~-~l~~~~~~~~ge~~l~d~i~~l~~~g~~v~~~~~~g~w~DIgt~~dl~~a~~~~~~~~ 284 (323)
T 2pa4_A 216 GRYLLDRKIFD-ALRRITPGAGGELQLTDAIDLLIDEGHPVHIVIHQGKRHDLGNPGGYIPACVDFGLSH 284 (323)
T ss_dssp EEEEEETHHHH-HHHHCCCCGGGCCCHHHHHHHHHHTTCCEEEEECCSEEEECSSHHHHHHHHHHHHHTC
T ss_pred EEEEECHHHHH-HHHhhCCCCCCeEeHHHHHHHHHHcCCCEEEEEeCCeEEeCCCHHHHHHHHHHHhhcC
Confidence 99999999885 44443222 111225778887775 78999999999999999999999998877544
|
| >1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-32 Score=252.97 Aligned_cols=233 Identities=23% Similarity=0.382 Sum_probs=183.2
Q ss_pred ceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcc-cChhHHHHHHHhhccCCCCcccC
Q 014953 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQ-YNSASLNRHLARAYNYGSGVTFG 86 (415)
Q Consensus 8 ~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~-~~~~~i~~~l~~~~~~~~~~~~~ 86 (415)
+|+|||||||.||||+|+|...||+|+||+|+ |||+|+++.|..+|+++|+|+++ ++.+.+.+++.+ +..|+
T Consensus 2 ~~~aIILAgG~gtRl~plT~~~pK~llpi~gk-pli~~~l~~l~~~gi~~I~vv~~~~~~~~i~~~l~~------g~~~g 74 (293)
T 1fxo_A 2 KRKGIILAGGSGTRLHPATLAISKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGD------GSNWG 74 (293)
T ss_dssp CEEEEEECCCCCTTTTTHHHHSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTT------SGGGT
T ss_pred CceEEEECCCCCCcCccccCCCCceeCeECCE-eHHHHHHHHHHHCCCCEEEEEeccccHHHHHHHHhc------ccccC
Confidence 58999999999999999999999999999999 99999999999999999998774 556777777643 22343
Q ss_pred CceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCee-cccChHHHHHHHHHcCCcEEEEEEE
Q 014953 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHL-YRMDYMDFVQNHRQSGADITISCLP 165 (415)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i-~~~~l~~~l~~h~~~~~~~ti~~~~ 165 (415)
.. +.+.. +. .+.|++++++.+.+++. .++++++.||.+ .+.++.++++.|.+.+.+++++..+
T Consensus 75 ~~-i~~~~--~~-------~~~G~~~al~~a~~~i~------~~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~ 138 (293)
T 1fxo_A 75 LD-LQYAV--QP-------SPDGLAQAFLIGESFIG------NDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYH 138 (293)
T ss_dssp CE-EEEEE--CS-------SCCCGGGHHHHTHHHHT------TSEEEEEETTEEEECTTHHHHHHHHHTCCSSEEEEEEE
T ss_pred ce-EEEee--CC-------CCCCHHHHHHHHHHHhC------CCCEEEEECChhccCccHHHHHHHHHhcCCCcEEEEEE
Confidence 22 22222 21 13699999999999885 378999999985 4668999999998777778888777
Q ss_pred cCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC-C
Q 014953 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT-A 244 (415)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~-~ 244 (415)
..+ +.+||++..|++|++..|.|||..+. +++.++|+|+|+++++..+ ....+. .
T Consensus 139 v~d--p~~~g~v~~d~~g~v~~~~ekp~~~~---------------------s~~~~~Giy~~~~~~l~~~-~~~~~~~~ 194 (293)
T 1fxo_A 139 VLD--PERYGVVEFDQGGKAISLEEKPLEPK---------------------SNYAVTGLYFYDQQVVDIA-RDLKPSPR 194 (293)
T ss_dssp CSC--GGGSEEEEECTTSCEEEEEESCSSCS---------------------SSEEEEEEEEECTTHHHHH-HHCCCCTT
T ss_pred CCC--cccCcEEEECCCCcEEEEEECCCCCC---------------------CCeEEEEEEEEcHHHHHHH-HhcCcccC
Confidence 766 56899999998999999999986432 3688999999999998643 332221 1
Q ss_pred Cc-ccccchhhhcccceEEEEEeC-ce-EEecCCHHHHHHHHHhhc
Q 014953 245 ND-FGSEIIPASANEQFLKAYLFN-DY-WEDIGTIRSFFEANLALT 287 (415)
Q Consensus 245 ~~-~~~~~l~~l~~~~~i~~~~~~-g~-~~di~t~~~y~~an~~~l 287 (415)
.. ...++++.+++.+++.++... ++ |.||||++||.+|+..+.
T Consensus 195 ge~~~td~~~~~l~~g~~~v~~~~~g~~w~Digt~edl~~a~~~~~ 240 (293)
T 1fxo_A 195 GELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIA 240 (293)
T ss_dssp SSCCHHHHHHHHHHTTCEEEEECCTTSEEEECCSHHHHHHHHHHHH
T ss_pred CceeHHHHHHHHHhcCCeEEEEeCCCCEEEcCCCHHHHHHHHHHHH
Confidence 11 235677777777888888875 75 999999999999998764
|
| >4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=252.23 Aligned_cols=228 Identities=13% Similarity=0.104 Sum_probs=170.1
Q ss_pred EEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhc-cCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCce
Q 014953 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCIN-SGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGC 89 (415)
Q Consensus 11 aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~-~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 89 (415)
+||||||.||||+|+|.++||+|+||+|+ |||+|+++++.+ +|+++|++++++..+ +.+++.+... .++...
T Consensus 2 ~iIlAaG~GtRl~plt~~~PK~llpv~gk-pli~~~l~~l~~~~gi~~iivv~~~~~~-~~~~~~~~~~-----~~~~~~ 74 (255)
T 4evw_A 2 IVIPMAGMSSRFFKAGYTQPKYMLEAHGQ-TLFEHSVNSFAAYFASTPFLFIVRNVYD-TAVFVREKAT-----QLGIKQ 74 (255)
T ss_dssp EEEECCSCCHHHHHTTCCSCGGGCEETTE-EHHHHHHGGGGGGTTTSCEEEEEESSTT-HHHHHHHHHH-----HHTCSS
T ss_pred EEEEcCCCCcccccCCCCCCccccEECCe-EHHHHHHHHHhccCCCceEEEEECchhh-hHHHHHHHHH-----HcCCCC
Confidence 89999999999999999999999999999 999999999999 799999999998876 5555544321 111111
Q ss_pred --EEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeec-ccChHHHHHHHHHcCCcEEEEEEEc
Q 014953 90 --VEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLY-RMDYMDFVQNHRQSGADITISCLPM 166 (415)
Q Consensus 90 --v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~-~~~l~~~l~~h~~~~~~~ti~~~~~ 166 (415)
+.+++ . +.+||++|++.+++++........++|+|++||+++ +.++.++ ..+++.++++.+.
T Consensus 75 ~~~~~~~---~-------~~~Gt~~av~~a~~~l~~~~~~~~~~~lV~~gD~l~~~~~~~~~-----~~~~~~~i~~~~~ 139 (255)
T 4evw_A 75 FYIAELH---T-------ETRGQAETVTLGLEELAKQGVDYQGSITVFNIDTFRPNFVFPDI-----SQHSDGYLEVFQG 139 (255)
T ss_dssp EEEEEES---S-------CCSSHHHHHHHHHHHHHHTTCCCCSCEEECCTTEECTTCCCCGG-----GGSSSEEEEEEEC
T ss_pred ceEEEeC---C-------CCCCHHHHHHHHHHHHhhcccCCCCcEEEEeCCEEEecchhHHH-----hhcCCcEEEEEec
Confidence 22221 1 136999999999999820000014789999999988 5556543 2566788988888
Q ss_pred CCCcCCcccEEEECCCC--CeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHH-HHHHHHhh----
Q 014953 167 DDSRASDFGLMKINNEG--RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKE-ILLNLLRW---- 239 (415)
Q Consensus 167 ~~~~~~~~g~v~~d~~~--~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~-~l~~~l~~---- 239 (415)
++ + .||++..|++| +|+++.||+.. ++++++|+|+|++. .|...+.+
T Consensus 140 ~~--p-~yG~v~~d~~g~~~V~~i~EK~~~-----------------------s~~~~~GiY~f~~~~~~~~~l~~~i~~ 193 (255)
T 4evw_A 140 GG--D-NWSFAKPEHAGSTKVIQTAEKNPI-----------------------SDLCSTGLYHFNRKEDYLEAYREYVAR 193 (255)
T ss_dssp CS--S-CSCEEEESSTTCCBEEEEESSSCS-----------------------SSEEEEEEEEESCHHHHHHHHHHHHTS
T ss_pred CC--C-ceeEEEECCCCCeEEEEEEeccCc-----------------------cCcEEEeEEEECcHHHHHHHHHHHHhc
Confidence 65 3 89999999888 99999999432 36899999999985 33333322
Q ss_pred hCC---CCCcccccchhhhccc-ceEEEEEeC-ceEEecCCHHHHHHHHHhh
Q 014953 240 RFP---TANDFGSEIIPASANE-QFLKAYLFN-DYWEDIGTIRSFFEANLAL 286 (415)
Q Consensus 240 ~~~---~~~~~~~~~l~~l~~~-~~i~~~~~~-g~~~di~t~~~y~~an~~~ 286 (415)
..+ ....+..|+++.+++. .++.++.++ ++|.|+|||++|.++...-
T Consensus 194 ~~~~~~~gE~~ltd~i~~li~~g~~v~~~~~~~~~w~digt~~~l~~~~~~~ 245 (255)
T 4evw_A 194 PSQEWERGELYIAPLYNELIQKGLNIHYHLIARHEVIFCGVPDEYTDFLRQP 245 (255)
T ss_dssp CGGGCSCSCCCSTTHHHHHHHTTCCEEEEECCGGGCEECCSHHHHHHHHHC-
T ss_pred ccccccCCeEehHHHHHHHHHCCCEEEEEEeccccEEECCCHHHHHHHHhcC
Confidence 111 2334567888888765 579999986 9999999999999997643
|
| >1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=250.76 Aligned_cols=233 Identities=24% Similarity=0.381 Sum_probs=182.6
Q ss_pred ceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcc-cChhHHHHHHHhhccCCCCcccC
Q 014953 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQ-YNSASLNRHLARAYNYGSGVTFG 86 (415)
Q Consensus 8 ~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~-~~~~~i~~~l~~~~~~~~~~~~~ 86 (415)
.|+|||||||.||||+|+|..+||+|+||+|+ |||+|+++.|..+|+++|+|+++ ++.+.+.+++.+ +..|+
T Consensus 3 ~m~aIILAgG~GtRl~plT~~~pK~llpi~gk-pli~~~l~~l~~~gi~~Iivv~~~~~~~~i~~~l~~------g~~~g 75 (295)
T 1lvw_A 3 HMKGIVLAGGSGTRLYPITRAVSKQLLPIYDK-PMIYYPLSVLMLAGIRDILIISTPRDLPLYRDLLGD------GSQFG 75 (295)
T ss_dssp SCEEEEECCCCCSTTTTTTTSSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTT------SGGGT
T ss_pred ceEEEEECCCCCCccccccCCCCceecEECCe-eHHHHHHHHHHHCCCCeEEEEeccchHHHHHHHhhh------ccccC
Confidence 48999999999999999999999999999999 99999999999999999999886 566777777743 22343
Q ss_pred CceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCee-cccChHHHHHHHHHcCCcEEEEEEE
Q 014953 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHL-YRMDYMDFVQNHRQSGADITISCLP 165 (415)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i-~~~~l~~~l~~h~~~~~~~ti~~~~ 165 (415)
.. +.++. +. .+.|++++++.+.+++. .++++++.||.+ .+.++.++++.|.+.+..++++..+
T Consensus 76 ~~-i~~~~--~~-------~~~G~~~al~~a~~~i~------~~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~ 139 (295)
T 1lvw_A 76 VR-FSYRV--QE-------EPRGIADAFIVGKDFIG------DSKVALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYY 139 (295)
T ss_dssp SE-EEEEE--CS-------SCCCGGGHHHHTHHHHT------TSCEEEEETTCCEECTTHHHHHHHHHTCCSSEEEEEEE
T ss_pred ce-EEEee--CC-------CCCChHHHHHHHHHHhC------CCcEEEEECCccccCcCHHHHHHHHHHcCCCcEEEEEE
Confidence 22 22222 21 13699999999999885 367888889985 4678999999998777778888877
Q ss_pred cCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC-C
Q 014953 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT-A 244 (415)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~-~ 244 (415)
..+ +.+|+++..|++++|..|.|||..+. +++.++|+|+|+++++..+ ....+. .
T Consensus 140 v~d--p~~~g~v~~d~~g~v~~~~ekp~~~~---------------------s~~~~~Giy~f~~~~l~~~-~~~~~~~~ 195 (295)
T 1lvw_A 140 VRD--PRPFGVVEFDSEGRVISIEEKPSRPK---------------------SNYVVPGLYFYDNQVVEIA-RRIEPSDR 195 (295)
T ss_dssp CSC--CTTSEEEEECTTSBEEEEEESCSSCS---------------------CSEECCSEEEECTTHHHHH-HHCCCCTT
T ss_pred CCC--cccCCEEEECCCCcEEEEEECCCCCC---------------------CCEEEEEeEEEcHHHHHHH-HhcCCccc
Confidence 766 56899999998999999999986432 3578999999999998643 332221 1
Q ss_pred Cc-ccccchhhhcccceEEEEEeC-ce-EEecCCHHHHHHHHHhhc
Q 014953 245 ND-FGSEIIPASANEQFLKAYLFN-DY-WEDIGTIRSFFEANLALT 287 (415)
Q Consensus 245 ~~-~~~~~l~~l~~~~~i~~~~~~-g~-~~di~t~~~y~~an~~~l 287 (415)
.. ...++++.+++.+++.++.+. ++ |.||||++||.+|+..+.
T Consensus 196 ge~~~td~~~~~l~~g~~~v~~~~~g~~w~Digt~edl~~a~~~~~ 241 (295)
T 1lvw_A 196 GELEITSVNEEYLRMGKLRVELMGRGMAWLDTGTHDGLLEASSFIE 241 (295)
T ss_dssp SCCCHHHHHHHHHHTTCEEEEEECTTCEECCCSSHHHHHHHHHHHH
T ss_pred CceeHHHHHHHHHHcCCcEEEEeCCCCeEEeCCCHHHHHHHHHHHH
Confidence 11 135667777777788888775 75 999999999999998664
|
| >1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-32 Score=252.75 Aligned_cols=233 Identities=24% Similarity=0.371 Sum_probs=182.4
Q ss_pred ceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcc-cChhHHHHHHHhhccCCCCcccC
Q 014953 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQ-YNSASLNRHLARAYNYGSGVTFG 86 (415)
Q Consensus 8 ~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~-~~~~~i~~~l~~~~~~~~~~~~~ 86 (415)
.|+|||||||.||||+|+|...||+|+||+|+ |||+|+++.|..+|+++|+|+++ ++.+.+.+++.+ +..|+
T Consensus 3 ~m~aIILAgG~GtRl~plT~~~pK~llpi~gk-pli~~~l~~l~~~gi~~I~vv~~~~~~~~i~~~l~~------g~~~g 75 (296)
T 1mc3_A 3 HMKGIILAGGSGTRLHPITRGVSKQLLPIYDK-PMIYYPLSVLMLAGIREILIITTPEDKGYFQRLLGD------GSEFG 75 (296)
T ss_dssp CCEEEEECCCCCGGGHHHHTTSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTT------SGGGT
T ss_pred ccEEEEECCCCCCcCCcccCCCCceeeEECCe-eHHHHHHHHHHhCCCCcEEEEechhHHHHHHHHHhc------ccccC
Confidence 48999999999999999999999999999999 99999999999999999999886 566777777643 22343
Q ss_pred CceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCee-cccChHHHHHHHHHcCCcEEEEEEE
Q 014953 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHL-YRMDYMDFVQNHRQSGADITISCLP 165 (415)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i-~~~~l~~~l~~h~~~~~~~ti~~~~ 165 (415)
.. +.++. +. .+.|++++++.+..++. .++++++.||.+ .+.++.++++.|.+.+..++++..+
T Consensus 76 ~~-i~~~~--~~-------~~~G~~~al~~a~~~i~------~~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~ 139 (296)
T 1mc3_A 76 IQ-LEYAE--QP-------SPDGLAQAFIIGETFLN------GEPSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQ 139 (296)
T ss_dssp CE-EEEEE--CS-------SCCCSTHHHHHTHHHHT------TSCEEEEETTEEEECSSCHHHHHHHTTCCSSEEEEEEE
T ss_pred ce-EEEec--cC-------CCCCHHHHHHHHHHHhC------CCCEEEEECCccccccCHHHHHHHHHHcCCCCEEEEEE
Confidence 22 22222 21 13699999999999885 367888889984 4677999999998777778888877
Q ss_pred cCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC-C
Q 014953 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT-A 244 (415)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~-~ 244 (415)
..+ +..||++..|++|+|..|.|||..+. +++.++|+|+|+++++.. ++...+. .
T Consensus 140 v~d--p~~yg~v~~d~~g~v~~~~ekp~~~~---------------------s~~~~~Giy~~~~~~l~~-~~~~~~~~~ 195 (296)
T 1mc3_A 140 VMD--PERFGVVEFDDNFRAISLEEKPKQPK---------------------SNWAVTGLYFYDSKVVEY-AKQVKPSER 195 (296)
T ss_dssp CSC--CSSSBBCEEETTEEEEECCBSCSSCS---------------------CSEEEEEEEECCTHHHHH-HHSCCCCSS
T ss_pred CCC--cccCCEEEECCCCcEEEEEECCCCCC---------------------CCEEEEEEEEEcHHHHHH-HHhcCcccc
Confidence 766 56899999998899999999986432 367899999999999854 4432221 1
Q ss_pred Cc-ccccchhhhcccceEEEEEeC-ce-EEecCCHHHHHHHHHhhc
Q 014953 245 ND-FGSEIIPASANEQFLKAYLFN-DY-WEDIGTIRSFFEANLALT 287 (415)
Q Consensus 245 ~~-~~~~~l~~l~~~~~i~~~~~~-g~-~~di~t~~~y~~an~~~l 287 (415)
.. ...++++.+++.+++.++... ++ |.|+||+++|.+|+..+.
T Consensus 196 ge~~~td~~~~~l~~g~~~v~~~~~g~~w~Digt~edl~~a~~~~~ 241 (296)
T 1mc3_A 196 GELEITSINQMYLEAGNLTVELLGRGFAWLDTGTHDSLIEASTFVQ 241 (296)
T ss_dssp SSCCHHHHHHHHHHTTCEEEEECCTTCEEEECCSHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHhcCCeEEEEeCCCCEEEeCCCHHHHHHHHHHHH
Confidence 11 135667777777788888875 75 999999999999998765
|
| >2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.3e-31 Score=247.74 Aligned_cols=241 Identities=18% Similarity=0.331 Sum_probs=153.3
Q ss_pred cceEEEEEcCCCCCccccccc-CCcccceee-CCcceeehhehhhhhccCCcEEEEEcccCh-hHHHHHHHhhccCCCCc
Q 014953 7 RTVAAVILGGGAGTRLYPLTK-QRAKPAVPI-GGAYRLIDVPMSNCINSGINKVYILTQYNS-ASLNRHLARAYNYGSGV 83 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~-~~pK~llpv-~g~~pli~~~l~~l~~~gi~~I~vv~~~~~-~~i~~~l~~~~~~~~~~ 83 (415)
++|+|||||||.|+||+|||. .+||+|+|| +|+ |||+|+++++.++ +++|+|++++.. +.+.+++...
T Consensus 3 ~~~~avIlAgG~gtRl~plt~~~~pK~ll~i~gg~-pli~~~l~~l~~~-~~~i~vv~~~~~~~~i~~~~~~~------- 73 (308)
T 2qh5_A 3 LKIKNILLSGGSGKRLWPLSRSLYPKQFLKLFDHK-SLFELSFKRNASL-VDETLIVCNEKHYFLALEEIKNE------- 73 (308)
T ss_dssp CCEEEEEECC-------------CCGGGCTTBTTB-CHHHHHHHHHHTT-CSEEEEEEEGGGHHHHHHHTTTT-------
T ss_pred CccEEEEEcCCCCccCCccCCCCCCCEEEECCCCC-CHHHHHHHHHHcc-CCCEEEEEChhHHHHHHHHHHHh-------
Confidence 358999999999999999996 899999999 599 9999999999999 999999999875 5666766421
Q ss_pred ccCCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeec-ccC-hHHHHHH---HHHcCCc
Q 014953 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLY-RMD-YMDFVQN---HRQSGAD 158 (415)
Q Consensus 84 ~~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~-~~~-l~~~l~~---h~~~~~~ 158 (415)
|+...+.++... .+.||+++++.+..++.. .+.|++++||+++ +.+ |.++++. |.+.++.
T Consensus 74 -~~~~~~~~i~~~---------~~~gt~~al~~a~~~l~~-----~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (308)
T 2qh5_A 74 -IKNKSVGFLLES---------LSKNTANAIALSALMSDK-----EDLLIVTPSDHLIKDLQAYENAIKKAIDLAQKGFL 138 (308)
T ss_dssp -CSSCEEEEEEES---------SCCCHHHHHHHHHHTSCT-----TSEEEEEESSCBCCCHHHHHHHHHHHHHHHHTTCE
T ss_pred -hCCCccEEEeCC---------CCCChHHHHHHHHHHhCC-----CCeEEEEcCCccccCHHHHHHHHHHHHHHHhcCCE
Confidence 221112333211 136999999999888742 3469999999987 666 8999987 7777788
Q ss_pred EEEEEEEcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHh
Q 014953 159 ITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLR 238 (415)
Q Consensus 159 ~ti~~~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~ 238 (415)
+|+.+.+..+ +..||++..|++++|..|.|||........ + ...++++++|+|+|++++|...++
T Consensus 139 ~t~~~~~~~~--~~~~g~i~~d~~~~V~~~~Ekp~~~~~~~~-~------------~~g~~~~n~Giy~~~~~~ll~~l~ 203 (308)
T 2qh5_A 139 VTFGVSIDKP--NTEFGYIESPNGLDVKRFIEKPSLDKAIEF-Q------------KSGGFYFNSGMFVFQAGVFLDELK 203 (308)
T ss_dssp EEEEEECSSC--CTTSEEEECSSSSBCSEEEESCCHHHHHHH-H------------HHCCEEEEEEEEEEEHHHHHHHHH
T ss_pred EEEEEecCCC--CCCceEEEECCCCEEEEEEECCChHHHHHH-h------------hcCCeEEEeEEEEEEHHHHHHHHH
Confidence 8888877654 467999988777899999999875321000 0 001368999999999987644443
Q ss_pred hhCCC------------C------Cccc---ccchh--------h-hcc-cceEEEEEeCceEEecCCHHHHHHHHHhh
Q 014953 239 WRFPT------------A------NDFG---SEIIP--------A-SAN-EQFLKAYLFNDYWEDIGTIRSFFEANLAL 286 (415)
Q Consensus 239 ~~~~~------------~------~~~~---~~~l~--------~-l~~-~~~i~~~~~~g~~~di~t~~~y~~an~~~ 286 (415)
...+. . ..+. .++++ . +++ +.++++++++++|.|||||++|.+++..-
T Consensus 204 ~~~p~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~sid~~lle~~~~v~~~~~~~~w~digt~~~l~~~~~~~ 282 (308)
T 2qh5_A 204 KHAPTILKGCERAFESLENAYFFEKKIARLSEKSMQDLEDMSIDIALMQQSHKIKMVELNAKWSDLGNFNALFEEAANE 282 (308)
T ss_dssp HHCHHHHHHHHHHGGGCEEECCSSSCEEEECHHHHHTSCCCCHHHHTTTTCSCEEEEECCSCCBC--------------
T ss_pred HhChHHHHHHHHHhhccccccccchhhhhhhHHHHhhCcccceeHHHhcCCCcEEEEECCCceeCCCCHHHHHHHhhcC
Confidence 32111 0 1111 23333 2 454 46899999999999999999999998754
|
| >1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-29 Score=229.07 Aligned_cols=222 Identities=16% Similarity=0.221 Sum_probs=160.7
Q ss_pred cceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccC
Q 014953 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (415)
++|.|||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|++++..+++.++. +.+ +
T Consensus 24 ~~~~aiIlAaG~gtRl~plt~~~pK~l~~i~gk-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~-~~~--------~ 93 (254)
T 1jyk_A 24 IRVKAIILAAGLGTRLRPLTENTPKALVQVNQK-PLIEYQIEFLKEKGINDIIIIVGYLKEQFDYLK-EKY--------G 93 (254)
T ss_dssp CCCEEEEEECSCCGGGTTTTSSSCGGGCEETTE-EHHHHHHHHHHHTTCCCEEEEECTTGGGGTHHH-HHH--------C
T ss_pred cCceEEEECCCCcccCCcccCCCCCEEeeECCE-EHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHH-HhC--------C
Confidence 468999999999999999999999999999999 999999999999999999999998877775443 222 1
Q ss_pred CceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEEEc
Q 014953 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPM 166 (415)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~~~ 166 (415)
+.++...+. ...|++++++.++.++ +++++++||+++..++ ++.+.+.++.+|+ ..
T Consensus 94 ---~~iv~~~~~-------~~~g~~~al~~a~~~~--------~~~lv~~~D~~~~~~~---~~~~~~~~~~~t~---~~ 149 (254)
T 1jyk_A 94 ---VRLVFNDKY-------ADYNNFYSLYLVKEEL--------ANSYVIDADNYLFKNM---FRNDLTRSTYFSV---YR 149 (254)
T ss_dssp ---CEEEECTTT-------TTSCTHHHHHTTGGGC--------TTEEEEETTEEESSCC---CCSCCCSEEEEEC---EE
T ss_pred ---cEEEECCCc-------cCCCcHHHHHHHHHHC--------CCEEEEeCCcccCHHH---HHHHHhCCceEEE---Ec
Confidence 233332221 1259999999988766 2489999999776553 2222223332332 22
Q ss_pred CCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHH---HHHhhhCCC
Q 014953 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILL---NLLRWRFPT 243 (415)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~---~~l~~~~~~ 243 (415)
.++ ...|+++ +|++|+|..+.|++. ..++++|+|+|+++.+. .+++.....
T Consensus 150 ~~~-~~~~~v~-~d~~g~v~~~~e~~~------------------------~~~~~~Giy~~~~~~~~~l~~~l~~~~~~ 203 (254)
T 1jyk_A 150 EDC-TNEWFLV-YGDDYKVQDIIVDSK------------------------AGRILSGVSFWDAPTAEKIVSFIDKAYVS 203 (254)
T ss_dssp SSC-SSCCEEE-ECTTCBEEEEECCCS------------------------SEEBCCSEEEECHHHHHHHHHHHHHHHTT
T ss_pred ccC-CCCeEEE-ECCCCeEEEEEECCC------------------------CCcEEEEEEEEcHHHHHHHHHHHHHHHhc
Confidence 221 1357754 788899999998643 24688999999987433 333332221
Q ss_pred ---CCcccccchhhhcccceEEEEEeC-ceEEecCCHHHHHHHHHhhcC
Q 014953 244 ---ANDFGSEIIPASANEQFLKAYLFN-DYWEDIGTIRSFFEANLALTA 288 (415)
Q Consensus 244 ---~~~~~~~~l~~l~~~~~i~~~~~~-g~~~di~t~~~y~~an~~~l~ 288 (415)
...+..++++.++++.++.++.++ ++|.+|+|++||.+|++.+.+
T Consensus 204 ~~~~e~~~~d~~~~l~~~~~v~~~~~~~~~~~~Idt~edl~~a~~~l~~ 252 (254)
T 1jyk_A 204 GEFVDLYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKLEEILKN 252 (254)
T ss_dssp TCCTTCCTTHHHHTTGGGCCEEEEECCTTSEEECCSHHHHHHHHHHHC-
T ss_pred CCccccCHHHHHHHHHhhCCeEEEEecCCeEEEcCCHHHHHHHHHHhhh
Confidence 234456677777778899999988 799999999999999987653
|
| >2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-29 Score=236.89 Aligned_cols=233 Identities=21% Similarity=0.318 Sum_probs=168.1
Q ss_pred eEEEEEcCCCCCcccccc-cCCcccceeeCC-cceeehhehhhhhcc-CCcEEEEEcccCh-hHHHHHHHhhccCCCCcc
Q 014953 9 VAAVILGGGAGTRLYPLT-KQRAKPAVPIGG-AYRLIDVPMSNCINS-GINKVYILTQYNS-ASLNRHLARAYNYGSGVT 84 (415)
Q Consensus 9 ~~aVILAaG~g~Rl~plt-~~~pK~llpv~g-~~pli~~~l~~l~~~-gi~~I~vv~~~~~-~~i~~~l~~~~~~~~~~~ 84 (415)
|++||||||.||||+||| ..+||+|+|++| + |||+|+++++..+ |+++++|++++.+ +.+.+++... ..
T Consensus 2 m~~VILAgG~GtRl~Pls~~~~pK~ll~l~g~~-pli~~~l~~l~~~~~~~~iivvt~~~~~~~i~~~l~~~------~~ 74 (336)
T 2x65_A 2 MKALILAGGSGERFWPLSTPETPKQFLKLFGNK-SLMRWTFERVLEEMDPKDVIVVTHKDYVERTKKELPEL------PD 74 (336)
T ss_dssp CEEEEECCCBCGGGTTTSCTTCBGGGCCCBTTB-CHHHHHHHHHHTTCCGGGEEEEEEGGGHHHHHHHCTTS------CG
T ss_pred eEEEEECCCCCccCCCCcCCCCCceEEECCCCC-cHHHHHHHHHhccCCCCcEEEEcChHHHHHHHHHhhcc------cc
Confidence 789999999999999999 789999999999 8 9999999999996 8999999999874 4566665321 11
Q ss_pred cCCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeeccc--Ch----HHHHHHHHHcCCc
Q 014953 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRM--DY----MDFVQNHRQSGAD 158 (415)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~--~l----~~~l~~h~~~~~~ 158 (415)
+ . + ++.+ ..+||++++..+...+.. .+.+++++||+++.. +| ..++++|.+.++.
T Consensus 75 ~--~-i-i~e~----------~~~gta~ai~~a~~~~~~-----~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~~~~~ 135 (336)
T 2x65_A 75 E--N-I-IAEP----------MKKNTAPACFIGTKLADD-----DEPVLVLPADHRIPDTKKFWKTVKKALDALEKYDGL 135 (336)
T ss_dssp G--G-E-EEES----------SCCCHHHHHHHHHTTSCT-----TCEEEEEETTCBCCCHHHHHHHHHHHHHHHHHHCSE
T ss_pred c--e-E-EeCC----------CCCCcHHHHHHHHHhhCC-----CCEEEEEcCCceeccHHHHHHHHHHHHHHHHhcCCe
Confidence 1 1 2 2211 136999999988765532 467999999997643 34 4455557766777
Q ss_pred EEEEEEEcCCCcCCcccEEEECCC-----CCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHH
Q 014953 159 ITISCLPMDDSRASDFGLMKINNE-----GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEIL 233 (415)
Q Consensus 159 ~ti~~~~~~~~~~~~~g~v~~d~~-----~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l 233 (415)
+|+.+.+... ...||++..+++ ++|..|.|||........ .....+++++|+|+|++++|
T Consensus 136 vt~~i~p~~~--~~~yG~I~~~~~~~~~~~~V~~f~EKp~~~~a~~~-------------~~~g~y~~n~Giy~~~~~~l 200 (336)
T 2x65_A 136 FTFGIVPTRP--ETGYGYIEIGEELEEGVHKVAQFREKPDLETAKKF-------------VESGRFLWNSGMFLWKAREF 200 (336)
T ss_dssp EEEEECCCSC--CSSSEEEEEEEEEETTEEEEEEEEESCCHHHHHHH-------------HHHTCEEEEEEEEEEEHHHH
T ss_pred EEEEeecccC--CCCceEEEECCccCCCccEEEEEEECCChHHHHHH-------------HhcCCeEEEeeeEEEEHHHH
Confidence 7887766543 367999988754 789999999986432100 00013689999999999987
Q ss_pred HHHHhhhCCC----------CC-cccccchhh---------hcc-cceEEEEEeCceEEecCCHHHHHHH
Q 014953 234 LNLLRWRFPT----------AN-DFGSEIIPA---------SAN-EQFLKAYLFNDYWEDIGTIRSFFEA 282 (415)
Q Consensus 234 ~~~l~~~~~~----------~~-~~~~~~l~~---------l~~-~~~i~~~~~~g~~~di~t~~~y~~a 282 (415)
...++...+. .. +|..+.++. +++ +.++++++++++|.||||+++|.++
T Consensus 201 l~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~sidy~vme~~~~v~v~~~~~~W~DiGt~~~l~~~ 270 (336)
T 2x65_A 201 IEEVKVCEPSIYENLKDVDPRNFEELKKAYEKVPSISVDYAVMEKSKKVRVVKADFEWSDLGNWSSVREI 270 (336)
T ss_dssp HHHHHHHCHHHHHHHTTCCTTCHHHHHHHHHHSCCCCHHHHTTTTCSCEEEEECSSCCBCCCSHHHHHHH
T ss_pred HHHHHHHCHHHHHHHHHhhhhhhhHHHHHHHhCccccHHHHHhcCCCeEEEEEecCCCcCCCCHHHHHhh
Confidence 4444432211 00 233445554 344 4789999999999999999999999
|
| >3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-27 Score=215.70 Aligned_cols=239 Identities=18% Similarity=0.244 Sum_probs=169.7
Q ss_pred ceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCC
Q 014953 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGD 87 (415)
Q Consensus 8 ~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~ 87 (415)
++.|||||+|.|||| | ||+|+|++|| |||+|+++++.++|+++|+|+++ .+.+.+++.+ ++
T Consensus 2 ~~~aiIlA~G~stRl-p-----~K~L~~i~Gk-Pli~~~l~~l~~~~~~~ivVv~~--~~~i~~~~~~---------~g- 62 (252)
T 3oam_A 2 SFTVVIPARYQSTRL-P-----GKPLADIGGK-PMIQWVYEQAMQAGADRVIIATD--DERVEQAVQA---------FG- 62 (252)
T ss_dssp CEEEEEECCCCCSSS-T-----TGGGCEETTE-EHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHH---------TT-
T ss_pred ceEEEEecCcCCCCC-C-----CcceeeECCE-EHHHHHHHHHHhCCCCeEEEECC--HHHHHHHHHH---------cC-
Confidence 588999999999999 3 8999999999 99999999999999999999985 4777777753 11
Q ss_pred ceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ec-ccChHHHHHHHHHcCCcEEEEEEE
Q 014953 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LY-RMDYMDFVQNHRQSGADITISCLP 165 (415)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~-~~~l~~~l~~h~~~~~~~ti~~~~ 165 (415)
+.++...+. .+.||++ +..+...+.. ...+.|++++||. ++ ..++.++++.|.+.++++++++.+
T Consensus 63 --~~v~~~~~~-------~~~Gt~~-~~~~~~~l~~---~~~d~vlv~~gD~Pli~~~~i~~l~~~~~~~~~~~~~~~~~ 129 (252)
T 3oam_A 63 --GVVCMTSPN-------HQSGTER-LAEVVAKMAI---PADHIVVNVQGDEPLIPPAIIRQVADNLAACSAPMATLAVE 129 (252)
T ss_dssp --CEEEECCTT-------CCSHHHH-HHHHHHHTTC---CTTSEEEECCTTCTTCCHHHHHHHHHHHHHSSCSEEEEEEE
T ss_pred --CEEEEcCCC-------CCCcHHH-HHHHHHhcCc---CCCCEEEEEeCCeeecCHHHHHHHHHHHHhcCCCEEEEeee
Confidence 122221121 2368888 4555555521 0158899999998 33 556899999999888899999998
Q ss_pred cCCCcCCcc-----cEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhh
Q 014953 166 MDDSRASDF-----GLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR 240 (415)
Q Consensus 166 ~~~~~~~~~-----g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~ 240 (415)
.++ +.+| +.+..|++|+++.|.++|-........ ..+.....+++.++|+|+|++++|..+....
T Consensus 130 v~~--~~~~~~p~~g~vv~d~~g~v~~fsr~~i~~~~~~~~--------~~~~~~~~~~~~n~GiY~~~~~~l~~~~~~~ 199 (252)
T 3oam_A 130 IED--EAEVFNPNAVKVITDKSGYALYFSRATIPWDRDNFA--------KADKAIVQPLLRHIGIYAYRAGFINTYLDWQ 199 (252)
T ss_dssp ECC--HHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHHHH--------SSSCCCCSCEEEEEEEEEEETTHHHHHHHSC
T ss_pred cCC--HHHhhCCCceEEEECCCCeEEEEeCCCCCCCCCccc--------cccccccccceEEEEEEEcCHHHHHHHHcCC
Confidence 876 4455 899999999999999987543210000 0000001257899999999999998765432
Q ss_pred CCCCCcccc--cchhhhcccceEEEEEeC-ceEEecCCHHHHHHHHHhhcCC
Q 014953 241 FPTANDFGS--EIIPASANEQFLKAYLFN-DYWEDIGTIRSFFEANLALTAH 289 (415)
Q Consensus 241 ~~~~~~~~~--~~l~~l~~~~~i~~~~~~-g~~~di~t~~~y~~an~~~l~~ 289 (415)
+......+ +.+..+-.+.+|.++..+ .+|.+||||+||.+|++.+.++
T Consensus 200 -~~~~e~~E~le~lr~l~~G~~i~~~~~~~~~~~~idt~~dl~~a~~~~~~r 250 (252)
T 3oam_A 200 -PSQLEKIECLEQLRVLWHGEKIHVAVALEAPPAGVDTPEDLEVVRRIVAER 250 (252)
T ss_dssp -CCHHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHHHT
T ss_pred -CCcccccchhHHHHHHHCCCeEEEEEecCCCCCCCCCHHHHHHHHHHHHhh
Confidence 11111001 223333346799998765 4689999999999999877654
|
| >2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20 | Back alignment and structure |
|---|
Probab=99.95 E-value=4.2e-28 Score=230.52 Aligned_cols=233 Identities=20% Similarity=0.311 Sum_probs=163.0
Q ss_pred ceEEEEEcCCCCCcccccc-cCCcccceeeCC-cceeehhehhhhhcc-CCcEEEEEcccCh-hHHHHHHHhhccCCCCc
Q 014953 8 TVAAVILGGGAGTRLYPLT-KQRAKPAVPIGG-AYRLIDVPMSNCINS-GINKVYILTQYNS-ASLNRHLARAYNYGSGV 83 (415)
Q Consensus 8 ~~~aVILAaG~g~Rl~plt-~~~pK~llpv~g-~~pli~~~l~~l~~~-gi~~I~vv~~~~~-~~i~~~l~~~~~~~~~~ 83 (415)
+|.+||||||.||||+||| ..+||+|+|++| + |||+|+++++..+ |+++++|++++.+ +.+.+++ +.
T Consensus 2 ~m~~VILAgG~GtRl~Pls~~~~pK~ll~l~G~~-pli~~~l~~l~~~~~~~~iiVvt~~~~~~~i~~~l------~~-- 72 (337)
T 2cu2_A 2 KTYALVMAGGRGERLWPLSREDRPKPFLPLFEGK-TLLEATLERLAPLVPPERTLLAVRRDQEAVARPYA------DG-- 72 (337)
T ss_dssp CEEEEEECCCCCGGGTTTCBTTBCGGGCBCGGGC-BHHHHHHHHHTTTSCGGGEEEEEEGGGHHHHGGGC------SS--
T ss_pred CeEEEEEcCCCcccCCccCCCCCCceEEEcCCCC-hHHHHHHHHHhCcCCCCCEEEEcChHHHHHHHHHh------cc--
Confidence 4899999999999999999 689999999999 8 9999999999998 8999999999864 3333332 11
Q ss_pred ccCCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeeccc--ChHHHHH----HHHHcCC
Q 014953 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRM--DYMDFVQ----NHRQSGA 157 (415)
Q Consensus 84 ~~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~--~l~~~l~----~h~~~~~ 157 (415)
. .+ ++.+ ...||+.++..+.. +... ...+.|++++||+++.. .|..+++ +|.+ ++
T Consensus 73 -~---~~-i~e~----------~~~gta~ai~~a~~-l~~~--~~~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~-~~ 133 (337)
T 2cu2_A 73 -I---RL-LLEP----------LGRDTAGAVLLGVA-EALK--EGAERLLVLPADHYVGDDEAYREALATMLEAAEE-GF 133 (337)
T ss_dssp -S---EE-EEES----------SCCHHHHHHHHHHH-HHHH--HTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCT-TC
T ss_pred -C---ce-EecC----------CCCCcHHHHHHHHH-Hhcc--CCCCEEEEEECCccCCCHHHHHHHHHHHHHHHHc-CC
Confidence 0 11 2221 13699999988876 5210 01478999999997653 3444444 3444 66
Q ss_pred cEEEEEEEcCCCcCCcccEEEECCC----CCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHH
Q 014953 158 DITISCLPMDDSRASDFGLMKINNE----GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEIL 233 (415)
Q Consensus 158 ~~ti~~~~~~~~~~~~~g~v~~d~~----~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l 233 (415)
.+|+...+... ...||++..+++ ++|..|.|||....... +....+++++|+|+|++++|
T Consensus 134 ~vt~~i~p~~~--~t~yG~I~~~~~~~~~~~V~~f~EKp~~~~a~~--------------~~~~g~~~n~Giy~f~~~~l 197 (337)
T 2cu2_A 134 VVALGLRPTRP--ETEYGYIRLGPREGAWYRGEGFVEKPSYAEALE--------------YIRKGYVWNGGVFAFAPATM 197 (337)
T ss_dssp EEEEEECCSSC--CSSSCEEEEEEEETTEEEEEEEECCCCHHHHHH--------------HHHTTCEEEEEEEEECHHHH
T ss_pred eEEEeeccCCC--CCCceEEEECCcccccCeEEEEEeCCChHHHHH--------------HhhcCCEEEEEEEEEeHHHH
Confidence 77777766543 467999988765 78999999997543110 00011689999999999987
Q ss_pred HHHHhhhCCCC-Ccc--------cccchhh---------hcc-cceEEEEEeCceEEecCCHHHHHHHHH
Q 014953 234 LNLLRWRFPTA-NDF--------GSEIIPA---------SAN-EQFLKAYLFNDYWEDIGTIRSFFEANL 284 (415)
Q Consensus 234 ~~~l~~~~~~~-~~~--------~~~~l~~---------l~~-~~~i~~~~~~g~~~di~t~~~y~~an~ 284 (415)
...++...+.. ..+ ..+.++. +++ +.++++++++++|.|+||+++|.++..
T Consensus 198 l~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~sidy~vme~~~~v~v~~~~~~W~DvGt~~~l~~~~~ 267 (337)
T 2cu2_A 198 AELFRRHLPSHHEALERLLAGASLEEVYAGLPKISIDYGVMEKAERVRVVLGRFPWDDVGNWRALERVFS 267 (337)
T ss_dssp HHHHHHHCHHHHHHHHHHHTTCCHHHHHHTSCCCCHHHHTGGGCSSEEEEEECSCEECCCSTTHHHHHHT
T ss_pred HHHHHHHCHHHHHHHHHHhcCCcHHHHHhhCccchHHHHHhhCCCcEEEEEeCCcEEcCCCHHHHHHHhh
Confidence 44554332210 000 0223332 344 468999999999999999999999954
|
| >3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=9.3e-25 Score=199.06 Aligned_cols=236 Identities=16% Similarity=0.170 Sum_probs=159.2
Q ss_pred cceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccC
Q 014953 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (415)
+++.|||||+|.||||. ||+|+|++|| |||+|+++++.++|+++|+|+++ .+.+.+++.. ++
T Consensus 8 M~~~aIIlA~G~stRl~------~K~L~~i~Gk-Pli~~~l~~l~~~~i~~VvVvt~--~~~i~~~~~~---------~g 69 (256)
T 3tqd_A 8 MEFRVIIPARFDSTRLP------GKALVDIAGK-PMIQHVYESAIKSGAEEVVIATD--DKRIRQVAED---------FG 69 (256)
T ss_dssp -CCEEEEECCCC---CT------TGGGCEETTE-EHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHH---------TT
T ss_pred CCceEEEEcCCCCCCCC------CCCeeeECCc-hHHHHHHHHHHhCCCCEEEEECC--HHHHHHHHHH---------cC
Confidence 56899999999999993 8999999999 99999999999999999999985 4667776643 11
Q ss_pred CceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ec-ccChHHHHHHHHHc-CCcEEEEE
Q 014953 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LY-RMDYMDFVQNHRQS-GADITISC 163 (415)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~-~~~l~~~l~~h~~~-~~~~ti~~ 163 (415)
+.++...+. ++.|++. +..+..++.. ...+.|+++.||. ++ ...+..+++.|.+. ++++++++
T Consensus 70 ---~~v~~~~~~-------~~~Gt~~-i~~a~~~l~~---~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~a~l~ 135 (256)
T 3tqd_A 70 ---AVVCMTSSD-------HQSGTER-IAEAAVALGF---EDDEIIVCLQGDEPLIPPDAIRKLAEDLDEHDNVKVASLC 135 (256)
T ss_dssp ---CEEEECCTT-------CCSHHHH-HHHHHHHTTC---CTTCEEEEECTTCCCCCHHHHHHHHHHHHHCC--CEEEEE
T ss_pred ---CeEEEeCCC-------CCCcHHH-HHHHHHHhCc---CCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEe
Confidence 122211111 2358876 7777777631 0158999999999 44 44589999999875 55777777
Q ss_pred EEcCCC----cCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhh
Q 014953 164 LPMDDS----RASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRW 239 (415)
Q Consensus 164 ~~~~~~----~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~ 239 (415)
.+..++ ++..++ +..|++|+++.|.++|.+........ ........+++...|+|.|++++|..+..
T Consensus 136 ~~v~~~~~~~~p~~vk-vv~d~~g~~l~fsr~pip~~r~~~~~-------~~~~~~~~~~~~~~GiY~y~~~~l~~~~~- 206 (256)
T 3tqd_A 136 TPITEVDELFNPHSTK-VVLNRRNYALYFSHAPIPWGRDTFSD-------KENLQLNGSHYRHVGIYAYRVGFLEEYLS- 206 (256)
T ss_dssp EECCCHHHHTCTTSCE-EEECTTSBEEEEESSCSSCCTTTTTC-------GGGCCCSSCCEEEEEEEEEEHHHHHHHHH-
T ss_pred eEcCCHHHhhCCCccE-EEECCCCEEeEEecCCCCCCCccccc-------ccccccCCcceEEEEEEEcCHHHHHHHHh-
Confidence 776431 123333 56788999999999987432100000 00000012578999999999999976543
Q ss_pred hCCCCCcccc----cchhhhcccceEEEEEeCce-EEecCCHHHHHHHHHh
Q 014953 240 RFPTANDFGS----EIIPASANEQFLKAYLFNDY-WEDIGTIRSFFEANLA 285 (415)
Q Consensus 240 ~~~~~~~~~~----~~l~~l~~~~~i~~~~~~g~-~~di~t~~~y~~an~~ 285 (415)
..+. .++. +.+..+-.+.+|.++.++++ |.+||||+||.+|++.
T Consensus 207 l~~s--~lE~~e~leqlr~le~G~~i~~~~~~~~~~~~idtpeDl~~a~~~ 255 (256)
T 3tqd_A 207 WDAC--PAEKMEALEQLRILWHGGRIHMVVAKSKCPPGVDTEEDLERVRAY 255 (256)
T ss_dssp SCCC--HHHHHHTCTTHHHHHTTCCCEEEECSSCCCCCCSSHHHHHHHHTT
T ss_pred CCCC--cccchhhhHHHHHHHCCCeEEEEEeCCCCCCCcCCHHHHHHHHHh
Confidence 2122 1111 23444556789999999975 8999999999999764
|
| >3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-24 Score=198.80 Aligned_cols=236 Identities=17% Similarity=0.229 Sum_probs=163.6
Q ss_pred cceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccC
Q 014953 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (415)
+++.|||||+|.|||| | +|+|+|++|| |||+|+++++.++|+++|+|+++ .+.+.+++.+ ++
T Consensus 17 M~~~aIIlA~G~stRl-p-----~K~L~~i~Gk-Pmi~~~l~~l~~~~i~~IvV~t~--~~~i~~~~~~---------~g 78 (264)
T 3k8d_A 17 MSFVVIIPARYASTRL-P-----GKPLVDINGK-PMIVHVLERARESGAERIIVATD--HEDVARAVEA---------AG 78 (264)
T ss_dssp -CCEEEEECCSCCSSS-T-----TGGGCEETTE-EHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHH---------TT
T ss_pred CceEEEEEcCCCCCCC-C-----CcceeeECCe-EHHHHHHHHHHhCCCCEEEEECC--HHHHHHHHHH---------cC
Confidence 4678999999999999 2 5999999999 99999999999999999999884 4667766643 11
Q ss_pred CceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ec-ccChHHHHHHHHHcCCcEEEEEE
Q 014953 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LY-RMDYMDFVQNHRQSGADITISCL 164 (415)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~-~~~l~~~l~~h~~~~~~~ti~~~ 164 (415)
+.++...+ +++.||+. +..+...+.. ...+.|+++.||. +. ...+..+++.|.+.++++++++.
T Consensus 79 ---~~v~~~~~-------~~~~Gt~~-i~~~~~~l~~---~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~~~~~ 144 (264)
T 3k8d_A 79 ---GEVCMTRA-------DHQSGTER-LAEVVEKCAF---SDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAV 144 (264)
T ss_dssp ---CEEEECCT-------TCCSHHHH-HHHHHHHHTC---CTTCEEEEECTTCTTCCHHHHHHHHHHHHTSSCSEEEEEE
T ss_pred ---CEEEEecC-------CCCCCHHH-HHHHHHHhcc---CCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCCEEEEEE
Confidence 12221111 12358876 7777776631 1158999999999 33 45589999999888889999999
Q ss_pred EcCCCc----CCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhh
Q 014953 165 PMDDSR----ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR 240 (415)
Q Consensus 165 ~~~~~~----~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~ 240 (415)
+..++. +..+ .+..|++|+++.|.++|.......... ...+. ..+++.++|+|.|++++|..+...
T Consensus 145 ~v~d~~~~~~p~~v-kVv~d~~g~~l~fsr~~ip~~r~~~~~-------~~~~~-~~~~~~~~GiY~y~~~~l~~~~~~- 214 (264)
T 3k8d_A 145 PIHNAEEAFNPNAV-KVVLDAEGYALYFSRATIPWDRDRFAE-------GLETV-GDNFLRHLGIYGYRAGFIRRYVNW- 214 (264)
T ss_dssp ECCSHHHHTCTTSC-EEEECTTSBEEEEESSCCSCCHHHHHH-------CSSCC-CSCCEEECSEEEEEHHHHHHHHHS-
T ss_pred EcCCHHHccCCCce-EEEECCCCeEEEEecCCCCCCCccccc-------ccccc-CCcceEEEEEEEECHHHHHHHHhC-
Confidence 887521 1222 356788999999999986422100000 00000 124788999999999999876542
Q ss_pred CCCCCcccc----cchhhhcccceEEEEEeC-ceEEecCCHHHHHHHHHhh
Q 014953 241 FPTANDFGS----EIIPASANEQFLKAYLFN-DYWEDIGTIRSFFEANLAL 286 (415)
Q Consensus 241 ~~~~~~~~~----~~l~~l~~~~~i~~~~~~-g~~~di~t~~~y~~an~~~ 286 (415)
.+. .++. +.+..+-.+.+|+++... .+|.+|+||+||.+|+..+
T Consensus 215 ~~~--~lE~~e~leqlr~le~G~~I~~~~~~~~~~~~IdtpeDl~~a~~~l 263 (264)
T 3k8d_A 215 QPS--PLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRAEM 263 (264)
T ss_dssp CCC--HHHHHHTCTTHHHHHTTCCEEEEECSCCCSCCCCSHHHHHHHHHHC
T ss_pred CCC--hhhhHHHHHHHHHHHCCCceEEEEeCCCCCCCCCCHHHHHHHHHHh
Confidence 121 1111 233444557799998664 4689999999999998743
|
| >2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-23 Score=189.79 Aligned_cols=224 Identities=18% Similarity=0.221 Sum_probs=153.1
Q ss_pred ceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCC
Q 014953 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGD 87 (415)
Q Consensus 8 ~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~ 87 (415)
++.|||||||.|+||+ ||+|+|++|+ |||+|+++++.++ +++|+|++++ +++.+++.+ +
T Consensus 2 ~~~aiIlA~G~g~R~~------~K~l~~i~g~-pli~~~l~~~~~~-~~~i~v~~~~--~~i~~~~~~---------~-- 60 (234)
T 2y6p_A 2 RRAVIIPARLGSTRLK------EKPLKNLLGK-PLIRWVVEGLVKT-GERVILATDS--ERVKEVVED---------L-- 60 (234)
T ss_dssp CEEEEEECCSCCTTTT------TGGGCEETTE-EHHHHHHHHHHTT-TSCEEEEESC--HHHHHHHTT---------T--
T ss_pred ceEEEEEcCCCCCCCC------CCcceeECCE-EHHHHHHHHHHHh-CCEEEEECCh--HHHHHHHHh---------c--
Confidence 5789999999999995 9999999999 9999999999999 9999999976 566666532 1
Q ss_pred ceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecc-cChHHHHHHHHHcCCcEEEEEEE
Q 014953 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYR-MDYMDFVQNHRQSGADITISCLP 165 (415)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~-~~l~~~l~~h~~~~~~~ti~~~~ 165 (415)
+.++...+. ...|+++++ .++..+. .+.|++++||. +++ .++.++++.|.+.++.++++...
T Consensus 61 --~~~~~~~~~-------~~~g~~~~~-~~~~~~~------~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~ 124 (234)
T 2y6p_A 61 --CEVFLTPSD-------LPSGSDRVL-YVVRDLD------VDLIINYQGDEPFVYEEDIKLIFRELEKGERVVTLARKD 124 (234)
T ss_dssp --SEEEECCTT-------CCSHHHHHH-HHHTTCC------CSEEEECCTTCCCCCHHHHHHHHHHHHHTCSEEEEEEEC
T ss_pred --eEEEECCcc-------cccchHHHH-HHHHhCC------CCEEEEecCCcCcCCHHHHHHHHHHHHhCCCeEEEecCC
Confidence 112211111 124788766 3444332 47899999999 777 56899999998877444554442
Q ss_pred cCC-CcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCC
Q 014953 166 MDD-SRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA 244 (415)
Q Consensus 166 ~~~-~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~~ 244 (415)
... ..+..++ +..+++|++..+.++|..... ++. ..+.+.++|+|+|+++.|..+.... +..
T Consensus 125 ~~~~~~~~~~~-~~~~~~g~v~~~~e~~~~~~~--------------~~~-~~~~~~~~giy~~~~~~l~~~~~~~-~~~ 187 (234)
T 2y6p_A 125 KEAYERPEDVK-VVLDREGYALYFSRSPIPYFR--------------KND-TFYPLKHVGIYGFRKETLMEFGAMP-PSK 187 (234)
T ss_dssp SGGGGCTTSCE-EEECTTSBEEEEESSCCSCCS--------------SCC-SSCCEEEEEEEEEEHHHHHHHHHSC-CCH
T ss_pred HHHhcCCCceE-EEEcCCCCEeeeecCCCCccc--------------ccc-cceeeEEEEEEEcCHHHHHHHHhCC-CCc
Confidence 111 1123344 345778999999998753110 000 0124679999999999987655321 111
Q ss_pred Ccccccc---hhhhcccceEEEEEeCceEEecCCHHHHHHHHHhh
Q 014953 245 NDFGSEI---IPASANEQFLKAYLFNDYWEDIGTIRSFFEANLAL 286 (415)
Q Consensus 245 ~~~~~~~---l~~l~~~~~i~~~~~~g~~~di~t~~~y~~an~~~ 286 (415)
... .+. +..+..+.++.++..+++|.||+||+||..|++.+
T Consensus 188 ~~~-~d~~~~~~~~~~g~~v~~~~~~~~~~dI~t~~dl~~a~~~~ 231 (234)
T 2y6p_A 188 LEQ-IEGLEQLRLLENGIKIKVLITENYYHGVDTEEDLKIVEEKL 231 (234)
T ss_dssp HHH-HHTCTHHHHHHTTCCCEEEECCSCCCCCCSHHHHHHHHHHC
T ss_pred cch-hhHHHHHHHHHCCCeEEEEEeCCcccCCCCHHHHHHHHHHH
Confidence 011 111 22233478999999999999999999999998765
|
| >2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.9e-24 Score=193.25 Aligned_cols=214 Identities=18% Similarity=0.221 Sum_probs=135.9
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCccc
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (415)
|++|.|||||||.|+||+|+ ||+|+|++|+ |||+|+++++.++ +++|+|++ +..+++.+++...+
T Consensus 16 m~~~~~iIlA~G~g~R~~~~----~K~l~~i~g~-pli~~~l~~l~~~-~~~i~vv~-~~~~~~~~~~~~~~-------- 80 (232)
T 2xme_A 16 IKLMKAVILAAGLGTRLGGV----PKPLVRVGGC-EIILRTMKLLSPH-VSEFIIVA-SRYADDIDAFLKDK-------- 80 (232)
T ss_dssp CCCEEEEEEECC------CC----CGGGCEETTE-EHHHHHHHHHGGG-EEEEEEEE-STTHHHHHHHHTTS--------
T ss_pred cccceEEEECCcCcCcCCCC----CcEEeEECCE-EHHHHHHHHHHHh-CCEEEEEe-CChHHHHHHHHHhc--------
Confidence 56799999999999999976 9999999999 9999999999998 99999999 77777777764322
Q ss_pred CCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHHHHcCCcEEEEEE
Q 014953 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITISCL 164 (415)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h~~~~~~~ti~~~ 164 (415)
+. .+.++..... ..|++++++.++.+++ +++++++||++++.+ +..+++ .. . +++..
T Consensus 81 ~~-~~~~v~~~~~--------~~g~~~~i~~a~~~~~-------~~~lv~~~D~p~~~~~~~~l~~----~~-~-~~~~~ 138 (232)
T 2xme_A 81 GF-NYKIVRHDRP--------EKGNGYSLLVAKNHVE-------DRFILTMGDHVYSQQFIEKAVR----GE-G-VIADR 138 (232)
T ss_dssp CC-CEEEEECSCG--------GGCHHHHHHTTGGGCC-------SSEEEEETTEEECHHHHHHHTT----CC-E-EEEES
T ss_pred CC-cEEEEECCCC--------CCCcHHHHHHHHHHCC-------CCEEEEcCCcccCHHHHHHHHh----CC-C-cEEEc
Confidence 11 1334332111 2599999999987763 579999999987554 244433 21 1 22221
Q ss_pred EcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCC
Q 014953 165 PMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA 244 (415)
Q Consensus 165 ~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~~ 244 (415)
........+++.+..+ +|++..+.+++.. ++..++|+|++++++|. .+++.....
T Consensus 139 ~~~~~~~~~~~~v~~~-~g~v~~~~~~~~~-----------------------~~~~~~g~~~~~~~~~~-~l~~~~~~g 193 (232)
T 2xme_A 139 EPRFVDIGEATKIRVE-DGRVAKIGKDLRE-----------------------FDCVDTGFFVLDDSIFE-HAEKLRDRE 193 (232)
T ss_dssp SCSSSCTTTSCEEEEE-TTEEEEEETTCSS-----------------------CSEEEEEEEEECTTHHH-HHGGGTTSS
T ss_pred cccccCCCcceEEEEc-CCEEEEeecCCCC-----------------------cceEEEEEEEECHHHHH-HHHHHHhcC
Confidence 1111123456666665 6899999877542 24678999999999886 444432111
Q ss_pred CcccccchhhhcccceEEEEEeC-ceEEecCCHHHHHHHHHh
Q 014953 245 NDFGSEIIPASANEQFLKAYLFN-DYWEDIGTIRSFFEANLA 285 (415)
Q Consensus 245 ~~~~~~~l~~l~~~~~i~~~~~~-g~~~di~t~~~y~~an~~ 285 (415)
...++.+++.+++.++.++ ++|.||+||+||.+|++.
T Consensus 194 ----~~~l~~ll~~~~v~~~~~~~~~~~dI~tpeDl~~a~~~ 231 (232)
T 2xme_A 194 ----EIPLSEIVKLARLPVTYVDGELWMDVDTKEDVRRANRA 231 (232)
T ss_dssp ----CCCHHHHHHHHTCBEEECCSCCEEEEECC---------
T ss_pred ----hhHHHHHHHcCCEEEEEECCCCEEeCCCHHHHHHHHhh
Confidence 1224455555567777775 689999999999998764
|
| >1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=7.4e-23 Score=186.35 Aligned_cols=228 Identities=17% Similarity=0.239 Sum_probs=155.4
Q ss_pred ceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCC-cEEEEEcccChhHHHHHHHhhccCCCCcccC
Q 014953 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGI-NKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (415)
Q Consensus 8 ~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi-~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (415)
++.|||||||.|+|| | ||+|+|++|+ |||+|+++.+.++|+ ++|+|++++ +.+.+++.+. +
T Consensus 2 ~~~aiIlA~G~~~R~-~-----~K~l~~i~g~-pli~~~i~~~~~~~~~~~ivvv~~~--~~i~~~~~~~---------~ 63 (245)
T 1h7e_A 2 KAVIVIPARYGSSRL-P-----GKPLLDIVGK-PMIQHVYERALQVAGVAEVWVATDD--PRVEQAVQAF---------G 63 (245)
T ss_dssp CEEEEEECCSCCSSS-T-----TGGGCEETTE-EHHHHHHHHHHTCTTCCEEEEEESC--HHHHHHHHHT---------T
T ss_pred CeEEEEEcCCcCCCC-C-----CCcccccCCc-hHHHHHHHHHHhCCCCCeEEEECCc--HHHHHHHHHc---------C
Confidence 588999999999999 5 9999999999 999999999999996 999999976 5676666431 1
Q ss_pred CceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCee-c-ccChHHHHHHHHHc-CCcEEEEE
Q 014953 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHL-Y-RMDYMDFVQNHRQS-GADITISC 163 (415)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i-~-~~~l~~~l~~h~~~-~~~~ti~~ 163 (415)
+.++...+. +..|+++++ .+...+. .+.+++++||.. . ..++..+++.|.+. ++++++.+
T Consensus 64 ---~~~~~~~~~-------~~~g~~~~~-~~~~~~~------~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~ 126 (245)
T 1h7e_A 64 ---GKAIMTRND-------HESGTDRLV-EVMHKVE------ADIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLC 126 (245)
T ss_dssp ---CEEEECCSC-------CSSHHHHHH-HHHHHSC------CSEEEECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred ---CeEEeCCCc-------cCCcHHHHH-HHHHhCC------CCEEEEEcCCcCcCCHHHHHHHHHHHHhCCCCCEEEEe
Confidence 223222111 124776655 4444442 478999999993 3 44589999999887 77787777
Q ss_pred EEcCCCc--CCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhC
Q 014953 164 LPMDDSR--ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF 241 (415)
Q Consensus 164 ~~~~~~~--~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~ 241 (415)
.+..... ...+..+..+++|++..|.+++..... ++ ...+.+.++|+|+|+++.|..++ ..
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~r--------------~~-~~~~~~~~~g~y~~~~~~l~~~~-~~- 189 (245)
T 1h7e_A 127 HAISAAEAAEPSTVKVVVNTRQDALYFSRSPIPYPR--------------NA-EKARYLKHVGIYAYRRDVLQNYS-QL- 189 (245)
T ss_dssp EEECHHHHTCTTSCEEEECTTCBEEEEESSCSSCCT--------------TG-GGCCEEEEEEEEEEEHHHHHHGG-GS-
T ss_pred ecCCHHHhcCCCCcEEEECCCCcEEEeecCCCCCCc--------------cc-ccCceeEEEEEEEcCHHHHHHHH-hC-
Confidence 6662110 011222333678899999876543110 00 00124679999999999886654 21
Q ss_pred CCCCcccccchhhh---cccceEEEEEeCceEEecCCHHHHHHHHHhhc
Q 014953 242 PTANDFGSEIIPAS---ANEQFLKAYLFNDYWEDIGTIRSFFEANLALT 287 (415)
Q Consensus 242 ~~~~~~~~~~l~~l---~~~~~i~~~~~~g~~~di~t~~~y~~an~~~l 287 (415)
........+.++.+ ..+.++.++..+++|.||+||+||..|+..+.
T Consensus 190 ~~~~~~~td~~~~~~~~~~g~~v~~~~~~~~~~dIdtp~Dl~~a~~~l~ 238 (245)
T 1h7e_A 190 PESMPEQAESLEQLRLMNAGINIRTFEVAATGPGVDTPACLEKVRALMA 238 (245)
T ss_dssp CCCHHHHHHTCTTHHHHHTTCCEEEEECCCCCCCSSSHHHHHHHHHHHH
T ss_pred CCCccccchhhHHHHHHHCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHH
Confidence 11111122444433 23679999999999999999999999987654
|
| >4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3e-22 Score=182.27 Aligned_cols=237 Identities=14% Similarity=0.151 Sum_probs=159.9
Q ss_pred eEEEEEcCCCCCcccccccCCcccceeeCCcceeehheh-hhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCC
Q 014953 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPM-SNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGD 87 (415)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l-~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~ 87 (415)
..|||||+|.|+||. +|+|+|++|+ |||+|++ +.+.++++++|+|++++ +.+.+++.. ++.
T Consensus 2 ~~aiIlA~G~stR~~------~K~L~~i~Gk-Pli~~~i~~~~~~~~~~~vvVvt~~--~~i~~~~~~---------~g~ 63 (253)
T 4fcu_A 2 KHIVIPARFSSSRLP------GKPLLLIHDR-PMILRVVDQAKKVEGFDDLCVATDD--ERIAEICRA---------EGV 63 (253)
T ss_dssp EEEEEECCSCCTTST------TGGGSEETTE-EHHHHHHHHHHTCTTCCEEEEEESC--HHHHHHHHT---------TTC
T ss_pred eEEEEEeCCCCCCCC------CCceeeECCe-EhHHHHHHHHHHhcCCCEEEEECCH--HHHHHHHHH---------cCC
Confidence 469999999999995 5999999999 9999999 99999999999999963 667666542 111
Q ss_pred ceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecc-cChHHHHHHHHHc-CCcEEEEEE
Q 014953 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYR-MDYMDFVQNHRQS-GADITISCL 164 (415)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~-~~l~~~l~~h~~~-~~~~ti~~~ 164 (415)
. ++...+. ...|+ +++..++..+.. ...+.|+++.||. +.. ..+..+++.|.+. ++.++.++.
T Consensus 64 ~---v~~~~~~-------~~~Gt-~~i~~a~~~~~~---~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~at~~~ 129 (253)
T 4fcu_A 64 D---VVLTSAD-------HPSGT-DRLSEVARIKGW---DADDIIVNVQGDEPLLPAQLVQQVAKLLVDKPNCSMSTLCE 129 (253)
T ss_dssp C---EEECCTT-------CCCHH-HHHHHHHHHHTC---CTTCEEEECCTTCTTCCHHHHHHHHHHHHHCTTCSEEEEEE
T ss_pred e---EEEeCCC-------CCChH-HHHHHHHHhcCc---CCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeE
Confidence 1 2111111 12476 478888777742 1147899999999 554 4589999999876 344444444
Q ss_pred EcCC----CcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhh
Q 014953 165 PMDD----SRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR 240 (415)
Q Consensus 165 ~~~~----~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~ 240 (415)
+..+ .++..+ .+..|++|+++.|.++|-......... .++.....++.++|+|+|++++|..+...
T Consensus 130 ~~~~~~~~~~p~~~-kvv~d~~g~~l~fsr~~ip~~r~~~~~--------~~~~~~~~~~~~~GiY~f~~~~l~~~~~~- 199 (253)
T 4fcu_A 130 PIHALDEFQRDSIV-KVVMSKQNEALYFSRATIPYDRDGAKR--------DEPTLHTQAFRHLGLYAYRVSLLQEYVTW- 199 (253)
T ss_dssp ECCCHHHHHCTTSC-EEEECTTSBEEEEESSCCSCCTTTSSS--------SSCCCCSCCEEEEEEEEEEHHHHHHHTTS-
T ss_pred EcCCHHHccCCCcc-EEEECCCCeEEEecCCCCCCCCCcccc--------cccccccceeEEEEEEEeCHHHHHHHHhC-
Confidence 4322 123443 457788999999999876432110000 00000124678999999999999876422
Q ss_pred CCCCCccc-ccch---hhhcccceEEEEEeCce-EEecCCHHHHHHHHHhhcCC
Q 014953 241 FPTANDFG-SEII---PASANEQFLKAYLFNDY-WEDIGTIRSFFEANLALTAH 289 (415)
Q Consensus 241 ~~~~~~~~-~~~l---~~l~~~~~i~~~~~~g~-~~di~t~~~y~~an~~~l~~ 289 (415)
+ ...+. .|.+ ..+-.+.+|+++..+++ |.+||||+||.+|++.+.+|
T Consensus 200 -~-~~~le~~e~le~lr~l~~G~~I~~~~~~~~~~~~IdtpeDL~~a~~~l~~r 251 (253)
T 4fcu_A 200 -E-MGKLEKLESLEQLRVLENGHRIAIAVAEANLPPGVDTQADLDRLNNMPVES 251 (253)
T ss_dssp -C-CCHHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHTSCGGG
T ss_pred -C-CCcccchhHHHHHHHHHCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHhh
Confidence 1 11221 1223 33345779999999999 99999999999999866543
|
| >1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=5e-22 Score=182.69 Aligned_cols=244 Identities=18% Similarity=0.237 Sum_probs=159.1
Q ss_pred ceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCC
Q 014953 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGD 87 (415)
Q Consensus 8 ~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~ 87 (415)
++.|||||||.|+||. +|+|+|++|+ |||+|+++++.++++++|+|++++ +.+.+++.+ + +
T Consensus 2 ~~~aiIlA~G~g~R~~------~K~l~~~~gk-pli~~~l~~l~~~~~~~ivvv~~~--~~i~~~~~~-~--------~- 62 (262)
T 1vic_A 2 SFTVIIPARFASSRLP------GKPLADIKGK-PMIQHVFEKALQSGASRVIIATDN--ENVADVAKS-F--------G- 62 (262)
T ss_dssp CCEEEEECCCCCSSST------TGGGCEETTE-EHHHHHHHHHHHTTCSEEEEEESC--HHHHHHHHH-T--------T-
T ss_pred CcEEEEEcCCCCCCCC------CCccccCCCe-EHHHHHHHHHHhCCCceEEEECCc--HHHHHHHHh-c--------C-
Confidence 5789999999999994 4999999999 999999999999999999999975 456666643 1 1
Q ss_pred ceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ec-ccChHHHHHHHHHcCCcEEEEEEE
Q 014953 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LY-RMDYMDFVQNHRQSGADITISCLP 165 (415)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~-~~~l~~~l~~h~~~~~~~ti~~~~ 165 (415)
+.++...+. +..|++ .+..+...+.. ...+.|++++||. +. ..++..+++.|.+.++++++++.+
T Consensus 63 --~~~~~~~~~-------~~~g~~-~~~~~~~~l~~---~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~ 129 (262)
T 1vic_A 63 --AEVCMTSVN-------HNSGTE-RLAEVVEKLAI---PDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVK 129 (262)
T ss_dssp --CEEEECCCS-------SCCHHH-HHHHHHHHTTC---CTTCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEEE
T ss_pred --CEEEECCcc-------ccCChH-HHHHHHHHhcc---CCCCEEEEEeCCcCccCHHHHHHHHHHHHhcCCCEEEEEEe
Confidence 222221111 124665 45555555532 1147899999998 33 456899999998888888888887
Q ss_pred cCCCc---CCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCC
Q 014953 166 MDDSR---ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP 242 (415)
Q Consensus 166 ~~~~~---~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~ 242 (415)
..+.. ...+..+..+++|++..|.+++..........+ ..-.+.+. -..+..++|+|+|+++++..+.... +
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~g~v~~f~~~~~~~~r~~~~~~---~~~~~~~~-p~~~~~~~giy~~~~~~l~~~~~~~-~ 204 (262)
T 1vic_A 130 IHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFMNL---QDVQKVQL-SDAYLRHIGIYAYRAGFIKQYVQWA-P 204 (262)
T ss_dssp CCCHHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHHHTTC---SCGGGCCC-CTTCEEEEEEEEEEHHHHHHHHHSC-C
T ss_pred cCCHHHhcCCCceEEEECCCCCEeeeecCCCCcCCcccccc---cccccccc-ccceEEEEEEEEeeHHHHHHHHhCC-C
Confidence 76420 133455555778999999887532110000000 00000000 0125789999999999887543221 1
Q ss_pred CCCcccccchh--hhc-ccceEEEEEeC-ceEEecCCHHHHHHHHHhhcCC
Q 014953 243 TANDFGSEIIP--ASA-NEQFLKAYLFN-DYWEDIGTIRSFFEANLALTAH 289 (415)
Q Consensus 243 ~~~~~~~~~l~--~l~-~~~~i~~~~~~-g~~~di~t~~~y~~an~~~l~~ 289 (415)
...+. .++++ .++ .+.++.++..+ ++|.||+||+||..|+..+...
T Consensus 205 ~~~~~-~e~~~~~~~l~~g~~v~~~~~~~~~~~dI~tpeDl~~a~~~l~~~ 254 (262)
T 1vic_A 205 TQLEN-LEKLEQLRVLYNGERIHVELAKEVPAVGVDTAEDLEKVRAILAAN 254 (262)
T ss_dssp CHHHH-HHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHHHT
T ss_pred Cchhh-hhhHHHHHHHHCCCeEEEEEeCCCCCCCCCCHHHHHHHHHHHHhc
Confidence 10000 11222 233 46799999998 7999999999999999887654
|
| >3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0 | Back alignment and structure |
|---|
Probab=99.85 E-value=8e-21 Score=172.89 Aligned_cols=229 Identities=13% Similarity=0.105 Sum_probs=147.0
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccC-CcEEEEEcccChhH-HHHHHHhhccCCCCc
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSAS-LNRHLARAYNYGSGV 83 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~g-i~~I~vv~~~~~~~-i~~~l~~~~~~~~~~ 83 (415)
|+++.|||||||.|+||++ .++||+|+|++|+ |||+|+++++.+++ +++|+|++++.... +.+.+.. +...
T Consensus 1 M~~~~aIIlAaG~g~Rm~~--~~~pK~l~~l~Gk-pll~~~l~~~~~~~~~~~ivvv~~~~~~~~~~~~~~~-~~~~--- 73 (246)
T 3f1c_A 1 MSLIYAQILAGGKGTRMGN--VSMPKQFLPLNGK-PIIVHTVEKFILNTRFDKILISSPKEWMNHAEDNIKK-YISD--- 73 (246)
T ss_dssp -CCEEEEEECC-----C-C--SSCCGGGSEETTE-EHHHHHHHHHHTCTTCSEEEEEECGGGHHHHHHHHHH-HCCC---
T ss_pred CCccEEEEECCccccccCC--CCCCCeEEEECCe-eHHHHHHHHHHcCCCCCEEEEEeCHHHHHHHHHHHHH-hCCC---
Confidence 4568899999999999986 4789999999999 99999999999987 99999999977654 3333332 2111
Q ss_pred ccCCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCC-CCCcCeEEEEcCCe-ec-ccChHHHHHHHHHcCCcEE
Q 014953 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPR-NKVIEDVLILSGDH-LY-RMDYMDFVQNHRQSGADIT 160 (415)
Q Consensus 84 ~~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~-~~~~~~~lv~~gD~-i~-~~~l~~~l~~h~~~~~~~t 160 (415)
..+.++.. + .+..++++.++.++.+.. ....+.+++++||. +. ...+..+++.|.+.++.
T Consensus 74 ----~~~~~~~~-~----------~~~~~sv~~al~~l~~~~~~~~~~~vlv~~~d~Pli~~~~i~~li~~~~~~~a~-- 136 (246)
T 3f1c_A 74 ----DRIVVIEG-G----------EDRNETIMNGIRFVEKTYGLTDDDIIVTHDAVRPFLTHRIIEENIDAALETGAV-- 136 (246)
T ss_dssp ----TTEEEEEC-C----------SSHHHHHHHHHHHHHHHTCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHTSEE--
T ss_pred ----CCEEEECC-C----------CchHHHHHHHHHHHhhhhcCCCCCEEEEecCcccCCCHHHHHHHHHHHHhcCCE--
Confidence 11333321 1 367889999988875200 00147899999998 43 44589999999887654
Q ss_pred EEEEEcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhh
Q 014953 161 ISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR 240 (415)
Q Consensus 161 i~~~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~ 240 (415)
+.+.+..+ .++..++++.+..+.+++... ..-.-++|+.+.|...++..
T Consensus 137 i~~~~~~d------~i~~~~~~~~v~~~~~r~~l~-------------------------~~qtpq~f~~~~L~~a~~~~ 185 (246)
T 3f1c_A 137 DTVIEALD------TIVESSNHEVITDIPVRDHMY-------------------------QGQTPQSFNMKKVFNHYQNL 185 (246)
T ss_dssp EEEEECSS------CEEECSSSSBCCBCCCGGGEE-------------------------EEEEEEEEEHHHHHHHHHTS
T ss_pred EEEEeccc------eEEEecCCCeEEEecChHHhh-------------------------hhcCCceeEHHHHHHHHHHH
Confidence 34444433 233444445555554443211 11234689988887776543
Q ss_pred CCCCCcccccchhhhc-ccceEEEEEeCceEEecCCHHHHHHHHHhhcCC
Q 014953 241 FPTANDFGSEIIPASA-NEQFLKAYLFNDYWEDIGTIRSFFEANLALTAH 289 (415)
Q Consensus 241 ~~~~~~~~~~~l~~l~-~~~~i~~~~~~g~~~di~t~~~y~~an~~~l~~ 289 (415)
.........|.+..+. .+.++..++.+.+|.+|+||+||..|+..+.++
T Consensus 186 ~~~~~~~~TD~~~~~~~~g~~v~~v~~~~~~~~Itt~~Dl~~ae~~l~~~ 235 (246)
T 3f1c_A 186 TPEKKQILTDACKICLLAGDDVKLVKGEIFNIKITTPYDLKVANAIIQER 235 (246)
T ss_dssp CHHHHHHCCCHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHHHHH
T ss_pred HHcCCCccCcHHHHHHHcCCCEEEEeCCCCccCcCCHHHHHHHHHHHhcc
Confidence 1111112234443333 356899999999999999999999999877654
|
| >2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=8.9e-21 Score=171.47 Aligned_cols=224 Identities=11% Similarity=0.066 Sum_probs=138.0
Q ss_pred eEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhcc-CCcEEEEEcccCh-hHHHHHHHhhccCCCCcccC
Q 014953 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNS-ASLNRHLARAYNYGSGVTFG 86 (415)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~-gi~~I~vv~~~~~-~~i~~~l~~~~~~~~~~~~~ 86 (415)
|.|||||||.|+||++ ..+||+|+|++|+ |||+|+++++.++ ++++|+|++++.. +.+.+++.. + +..+.
T Consensus 3 ~~~iIlA~G~g~R~~~--~~~~K~l~~i~g~-pli~~~l~~l~~~~~~~~i~vv~~~~~~~~~~~~~~~-~----~~~~~ 74 (236)
T 2vsh_A 3 IYAGILAGGTGTRMGI--SNLPKQFLELGDR-PILIHTIEKFVLEPSIEKIVVGVHGDWVSHAEDLVDK-Y----LPLYK 74 (236)
T ss_dssp EEEEEEEC-------------CGGGSEETTE-EHHHHHHHHHHTCTTCCCEEEEECGGGHHHHHHHHHH-H----CGGGG
T ss_pred eEEEEeCCccccccCC--CCCCCeeeeeCCc-cHHHHHHHHHHcCCCCCeEEEEeCHHHHHHHHHHHHh-c----ccccc
Confidence 7899999999999997 6789999999999 9999999999998 5999999999887 556665532 2 10111
Q ss_pred CceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCC--CcCeEEEEcCCe-ecc-cChHHHHHHHHHcCCcEEEE
Q 014953 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNK--VIEDVLILSGDH-LYR-MDYMDFVQNHRQSGADITIS 162 (415)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~--~~~~~lv~~gD~-i~~-~~l~~~l~~h~~~~~~~ti~ 162 (415)
........ ..|++++++.++.++... .. ..+.+++++||. ++. .++..+++.|.+.++ +++
T Consensus 75 -~~~~~~~~-----------~~~~~~~i~~~l~~~~~~-~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~--~~~ 139 (236)
T 2vsh_A 75 -ERIIITKG-----------GADRNTSIKNIIEAIDAY-RPLTPEDIVVTHDSVRPFITLRMIQDNIQLAQNHDA--VDT 139 (236)
T ss_dssp -GGEEEEEC-----------CSSHHHHHHHHHHHHHHH-SCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHSSE--EEE
T ss_pred -CceEEECC-----------CCchHHHHHHHHHHHHhh-ccCCCCCEEEEecCCcccCCHHHHHHHHHHHHhcCc--EEE
Confidence 01222110 037889999988877310 00 036789999999 544 468999999987765 344
Q ss_pred EEEcCCCcCCcccEEEECCCC-CeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhC
Q 014953 163 CLPMDDSRASDFGLMKINNEG-RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF 241 (415)
Q Consensus 163 ~~~~~~~~~~~~g~v~~d~~~-~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~ 241 (415)
+.+..+ + +..+++| ++..+.+++.. ... ...|+|+++.+..+++...
T Consensus 140 ~~~~~~--~-----~~~~~~g~~~~~~~~~~~~------------------------~~~-~~p~~f~~~~l~~~~~~~~ 187 (236)
T 2vsh_A 140 VVEAVD--T-----IVESTNGQFITDIPNRAHL------------------------YQG-QTPQTFRCKDFMDLYGSLS 187 (236)
T ss_dssp EEECCS--C-----EEECSSSSBCCBCCCGGGE------------------------EEE-EEEEEEEHHHHHHHHHTCC
T ss_pred EEeccc--c-----EEEeCCCCeeeeecChHHh------------------------eee-cCCcEecHHHHHHHHHHHH
Confidence 445443 1 1223566 77666554211 111 2378899988876665321
Q ss_pred CCCCcccccchhhhcc-cceEEEEEeCceEEecCCHHHHHHHHHhhc
Q 014953 242 PTANDFGSEIIPASAN-EQFLKAYLFNDYWEDIGTIRSFFEANLALT 287 (415)
Q Consensus 242 ~~~~~~~~~~l~~l~~-~~~i~~~~~~g~~~di~t~~~y~~an~~~l 287 (415)
.....-..+.+..+.. +.++..+..+++|.||+||+||..|+..+.
T Consensus 188 ~~g~~~~~~~~~~l~~~~~~v~~~~~~~~~~dIdtpeDl~~a~~~~~ 234 (236)
T 2vsh_A 188 DEEKEILTDACKIFVIKGKDVALAKGEYSNLKITTVTDLKIAKSMIE 234 (236)
T ss_dssp HHHHHHCCSHHHHHHHTTCCEEEEECCTTCCCCCSHHHHHHHHHHTC
T ss_pred hcCCCcCCCHHHHHHHcCCCEEEEECCccccCcCCHHHHHHHHHHhh
Confidence 1000001222233222 457888998889999999999999987653
|
| >1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A | Back alignment and structure |
|---|
Probab=99.84 E-value=4.9e-20 Score=166.06 Aligned_cols=220 Identities=13% Similarity=0.114 Sum_probs=133.1
Q ss_pred cceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccC-CcEEEEEcccChhHHHHHHHhhccCCCCccc
Q 014953 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~g-i~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (415)
++|.|||||||.|+||++ ..||+|+|++|+ |||+|+++.+.+++ +++|+|++++..+.+.+ +.+.. .
T Consensus 5 ~~~~aiIlA~G~g~R~~~---~~~K~l~~~~gk-pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~-~~~~~-~------ 72 (231)
T 1vgw_A 5 RKNIALIPAAGIGVRFGA---DKPKQYVEIGSK-TVLEHVLGIFERHEAVDLTVVVVSPEDTFADK-VQTAF-P------ 72 (231)
T ss_dssp CCEEEEEECC-------------CCSCCEETTE-EHHHHHHHHHHTCTTCCEEEEECCTTCSTHHH-HHHHC-T------
T ss_pred CceEEEEEcccccccCCC---CCCceEeEECCe-EHHHHHHHHHHcCCCCCeEEEEECccHHHHHH-HHhcC-C------
Confidence 568999999999999985 579999999999 99999999999875 99999999987766665 43311 0
Q ss_pred CCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCC-CCCcCeEEEEcCCe-eccc-ChHHHHHHHHHcCCcEEEE
Q 014953 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPR-NKVIEDVLILSGDH-LYRM-DYMDFVQNHRQSGADITIS 162 (415)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~-~~~~~~~lv~~gD~-i~~~-~l~~~l~~h~~~~~~~ti~ 162 (415)
..+.++. . ..|++++++.++..+.... ....+.+++++||. +.+. .+..+++.|.+.+.. .++
T Consensus 73 --~~i~~~~--~---------~~~~~~si~~~l~~~~~~~~~~~~~~vlv~~~D~p~~~~~~i~~l~~~~~~~~~~-~~~ 138 (231)
T 1vgw_A 73 --QVRVWKN--G---------GQTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAAEG-GIL 138 (231)
T ss_dssp --TSEEECC--C---------CSSHHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTTCTTC-EEE
T ss_pred --CceEEEc--C---------CCcHHHHHHHHHHHHhhhccCCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCe-EEE
Confidence 1133331 1 1489999999988773100 00147899999998 4444 488999988765423 344
Q ss_pred EEEcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCC
Q 014953 163 CLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP 242 (415)
Q Consensus 163 ~~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~ 242 (415)
+.+..+ . .... ++|++....++ .. .... .+.|+|+.+.|..+++....
T Consensus 139 ~~~~~~--~----~~~~-~~g~i~~~~~~---~~---------------------~~~~-~~p~~f~~~~l~~~~~~~~~ 186 (231)
T 1vgw_A 139 AVPVAD--T----LKRA-ESGQISATVDR---SG---------------------LWQA-QTPQLFQAGLLHRALAAENL 186 (231)
T ss_dssp EEECCS--C----EEEE-SSSBEEEEECC---TT---------------------EEEE-EEEEEEEHHHHHHHHHC---
T ss_pred Eeeccc--c----eEEe-CCCceEecCCh---HH---------------------heee-eCCcEecHHHHHHHHHHHhh
Confidence 444433 1 1112 34555433211 10 0112 24889999888766653211
Q ss_pred CCCcccccchhhhcccceEEEEEeCceEEecCCHHHHHHHHHhh
Q 014953 243 TANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLAL 286 (415)
Q Consensus 243 ~~~~~~~~~l~~l~~~~~i~~~~~~g~~~di~t~~~y~~an~~~ 286 (415)
........++.. .+.++..+..++.|.||+||+||..|+..+
T Consensus 187 ~g~~~~~~~~~~--~~~~v~~v~~~~~~~dIdtpeDl~~a~~~l 228 (231)
T 1vgw_A 187 GGITDEASAVEK--LGVRPLLIQGDARNLKLTQPQDAYIVRLLL 228 (231)
T ss_dssp -CCCSHHHHHHT--TTCCCEEEECCTTCCCCCSHHHHHHHHHHC
T ss_pred cCCCcHHHHHHH--cCCCEEEEECCccccCcCCHHHHHHHHHHH
Confidence 110001112222 146788888778999999999999998754
|
| >2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.2e-20 Score=167.37 Aligned_cols=214 Identities=18% Similarity=0.136 Sum_probs=146.8
Q ss_pred ceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccC-CcEEEEEcccChhH-HHHHHHhhccCCCCccc
Q 014953 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSAS-LNRHLARAYNYGSGVTF 85 (415)
Q Consensus 8 ~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~g-i~~I~vv~~~~~~~-i~~~l~~~~~~~~~~~~ 85 (415)
+|.|||||||.|+||+ ...||+|+|++|+ |||+|+++.+.+++ +++|+|++++.... +.+++. + .
T Consensus 2 ~~~~vIlA~G~g~R~~---~~~~K~l~~~~g~-pli~~~l~~l~~~~~~~~i~vv~~~~~~~~~~~~~~-------~--~ 68 (223)
T 2xwl_A 2 ATVAVVPAAGSGERLR---AGRPKAFVTLGGT-PLLEHALSGLRASGVIDRIVIAVPPALTDESKLVFG-------G--E 68 (223)
T ss_dssp CEEEEEECCCCCGGGT---SSSCGGGSEETTE-EHHHHHHHHHHHHSCCSEEEEEECGGGHHHHHHHTC-------B--T
T ss_pred ceEEEEECCccCcccC---CCCCCeeeEECCe-EHHHHHHHHHhcCCCCCeEEEEEcccHHHHHHHHhc-------c--C
Confidence 5889999999999998 4689999999999 99999999999988 99999999987643 433321 0 0
Q ss_pred CCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-eccc-ChHHHHHHHHHcCCcEEEEE
Q 014953 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRM-DYMDFVQNHRQSGADITISC 163 (415)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~-~l~~~l~~h~~~~~~~ti~~ 163 (415)
.+.++.. . .+++++++.++..++. .+.+++++||. +.+. ++..+++.|. .+.+.++.+
T Consensus 69 ---~v~~~~~--~---------~~~~~~i~~al~~~~~-----~~~vlv~~~D~P~~~~~~i~~l~~~~~-~~~~~~i~~ 128 (223)
T 2xwl_A 69 ---DSVIVSG--G---------VDRTESVALALEAAGD-----AEFVLVHDAARALTPPALIARVVAALK-EGHSAVVPG 128 (223)
T ss_dssp ---TEEEEEC--C---------SSHHHHHHHHHTTCTT-----CSEEEECCTTCTTCCHHHHHHHHHHHH-HTCSEEEEE
T ss_pred ---CeEEEcC--C---------CCHHHHHHHHHHhcCC-----CCEEEEEcCCcccCCHHHHHHHHHHHh-hcCCeEEEE
Confidence 1333321 1 2678899988877621 47899999998 4444 5899999883 334566666
Q ss_pred EEcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC
Q 014953 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (415)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~ 243 (415)
.+..+ +..+ .|++|++..+.+++.. ......|+|+++.+..+.+...
T Consensus 129 ~~~~d--~~~~----~~~~g~~~~~~e~~~l-------------------------~~~~~p~~f~~~~l~~~~~~~~-- 175 (223)
T 2xwl_A 129 LAPAD--TIKA----VDANGAVLGTPERAGL-------------------------RAVQTPQGFHADVLRRAYARAT-- 175 (223)
T ss_dssp ECCSS--CEEE----ECTTSBEEECCCGGGE-------------------------EEECSCEEEEHHHHHHHHTTCC--
T ss_pred Eeccc--ceEE----EcCCCcEEeecChHHh-------------------------eeeeCCcccCHHHHHHHHHHhh--
Confidence 65543 2222 3667888877665321 0112357889887766654321
Q ss_pred CCcccccchhhhcc-cceEEEEEeCceEEecCCHHHHHHHHHhhcC
Q 014953 244 ANDFGSEIIPASAN-EQFLKAYLFNDYWEDIGTIRSFFEANLALTA 288 (415)
Q Consensus 244 ~~~~~~~~l~~l~~-~~~i~~~~~~g~~~di~t~~~y~~an~~~l~ 288 (415)
..+..+....+.. +.++..++.+++|.||+||+||..|+..+.+
T Consensus 176 -~~~~~~~~~~~~~~~~~v~~~~~~~~~~dIdtpeDl~~a~~~l~~ 220 (223)
T 2xwl_A 176 -AGGVTDDASLVEQLGTPVQIVDGDPLAFKITTPLDLVLAEAVLAH 220 (223)
T ss_dssp -SCCCCCHHHHHHTTTCCCEEEECCGGGCCCCSHHHHHHHHHHHHH
T ss_pred -CCCCccHHHHHHHcCCCEEEEECCcccccccCHHHHHHHHHHHhh
Confidence 1122233332222 4678888888899999999999999876643
|
| >2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.1e-20 Score=168.17 Aligned_cols=219 Identities=12% Similarity=0.106 Sum_probs=138.8
Q ss_pred cceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhcc-CCcEEEEEcccChhHHHHHHHhhccCCCCccc
Q 014953 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~-gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (415)
+++.|||||||.|+||+ ...||+|+|++|+ |||+|+++.+.++ ++++|+|++++..+.+.+++... +
T Consensus 3 ~~~~aiIlAaG~g~R~~---~~~~K~l~~i~g~-pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~--------~ 70 (228)
T 2yc3_A 3 KSVSVILLAGGQGKRMK---MSMPKQYIPLLGQ-PIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEES--------I 70 (228)
T ss_dssp TCEEEEEECCCCC----------CGGGSEETTE-EHHHHHHHHHHHCTTEEEEEEECCGGGHHHHHTTTTT--------S
T ss_pred cceEEEEECCccccccC---CCCCccEeEECCE-EHHHHHHHHHHcCCCCCeEEEEEChHHHHHHHHHHHh--------C
Confidence 46899999999999997 4579999999999 9999999999998 89999999998876665554321 1
Q ss_pred CCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecc-cChHHHHHHHHHcCCcEEEEE
Q 014953 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYR-MDYMDFVQNHRQSGADITISC 163 (415)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~-~~l~~~l~~h~~~~~~~ti~~ 163 (415)
+. .+.++.. . .|..++++.++.++.. ..+.++++.||. +.. .++..+++.|.+.++ ++++
T Consensus 71 ~~-~v~~~~~--~---------~~~~~sv~~al~~~~~----~~~~vl~~d~d~P~~~~~~i~~l~~~~~~~~~--~i~~ 132 (228)
T 2yc3_A 71 DV-DLSFAIP--G---------KERQDSVYSGLQEIDV----NSELVCIHDSARPLVNTEDVEKVLKDGSAVGA--AVLG 132 (228)
T ss_dssp SS-EEEEECC--C---------SSHHHHHHHHHTTSCT----TCSEEEEEETTCTTCCHHHHHHHHHHHHHHSE--EEEE
T ss_pred CC-cEEEECC--C---------CCHHHHHHHHHHhhcc----CCCEEEEecCCCccCCHHHHHHHHHHHHhcCc--eEEE
Confidence 11 1333321 1 3888999999887742 136789999997 444 458999998877654 4545
Q ss_pred EEcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC
Q 014953 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (415)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~ 243 (415)
.+..+. +...++++.+..+.+++. .+...+ .|+|+.+.|...++.....
T Consensus 133 ~~~~~~------~~~~~~~~~v~~~~~~~~------------------------~~~~~~-~~~f~~~~l~~~~~~~~~~ 181 (228)
T 2yc3_A 133 VPAKAT------IKEVNSDSLVVKTLDRKT------------------------LWEMQT-PQVIKPELLKKGFELVKSE 181 (228)
T ss_dssp EECCSC------CCCBCTTSCBCCCCSCCC------------------------CEEEEE-EEEECHHHHHHHHHHHHHH
T ss_pred Eeccce------EEEEcCCCceEEecCccc------------------------eEEEeC-CcEEEHHHHHHHHHHHHhc
Confidence 554321 112244445543221110 122333 8999988776555431111
Q ss_pred CCcccccchhhhcc-cceEEEEEeCceEEecCCHHHHHHHHHhhc
Q 014953 244 ANDFGSEIIPASAN-EQFLKAYLFNDYWEDIGTIRSFFEANLALT 287 (415)
Q Consensus 244 ~~~~~~~~l~~l~~-~~~i~~~~~~g~~~di~t~~~y~~an~~~l 287 (415)
. ....+.+..+.+ +.++..+..+..|.||+||+||..|+..+.
T Consensus 182 ~-~~~~~~~~~l~~~g~~v~~~~~~~~~~dIdtpeDl~~a~~~l~ 225 (228)
T 2yc3_A 182 G-LEVTDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERILS 225 (228)
T ss_dssp T-CCCCSTTHHHHHSSSCCEEEECCTTCCCCCSHHHHHHHHHHHT
T ss_pred C-CCcccHHHHHHHcCCceEEEeCCccccCcCCHHHHHHHHHHHh
Confidence 1 112344433332 457766665668999999999999987654
|
| >1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A | Back alignment and structure |
|---|
Probab=99.84 E-value=3e-20 Score=167.15 Aligned_cols=217 Identities=16% Similarity=0.128 Sum_probs=145.6
Q ss_pred cceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccC-CcEEEEEcccChhHHHHHHHhhccCCCCccc
Q 014953 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~g-i~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (415)
+++.|||||||.|+||+ ||+|+|++|+ |||+|+++.+.+++ +++|+|++++ +.+.+++.+ + +
T Consensus 3 m~~~aiIlA~G~g~R~~------~K~l~~i~gk-pll~~~l~~~~~~~~~~~ivvv~~~--~~i~~~~~~-~--~----- 65 (228)
T 1ezi_A 3 KQNIAVILARQNSKGLP------LKNLRKMNGI-SLLGHTINAAISSKCFDRIIVSTDG--GLIAEEAKN-F--G----- 65 (228)
T ss_dssp CEEEEEEECCSSCSSST------TTTTCEETTE-EHHHHHHHHHHHHCCCSEEEEEESC--HHHHHHHHH-T--T-----
T ss_pred CceEEEEecCCCCCCCC------CcccceeCCc-CHHHHHHHHHHhCCCCCEEEEECCC--HHHHHHHHH-c--C-----
Confidence 35779999999999996 9999999999 99999999999988 7999999964 455555532 1 1
Q ss_pred CCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ec-ccChHHHHHHHHHcCCcEEEEE
Q 014953 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LY-RMDYMDFVQNHRQSGADITISC 163 (415)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~-~~~l~~~l~~h~~~~~~~ti~~ 163 (415)
.. + +..+..-. ....|++++++.++..+.. ..+.+++++||. +. ..++..+++.|.+.++++++.+
T Consensus 66 -~~-~-~~~~~~~~-----~~~~g~~~sv~~~l~~~~~----~~d~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~ 133 (228)
T 1ezi_A 66 -VE-V-VLRPAELA-----SDTASSISGVIHALETIGS----NSGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSA 133 (228)
T ss_dssp -CE-E-EECCC-----------CHHHHHHHHHHHHHTC----CSEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEE
T ss_pred -CE-E-EeCchHHc-----CCCCChHHHHHHHHHHhCC----CCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCEEEEE
Confidence 11 1 11111000 0124889999999988742 147899999998 33 3558899988877777778877
Q ss_pred EEcCCCcCCcccEEEECCCCCeEEEEEcCC-cccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCC
Q 014953 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPK-GKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP 242 (415)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~ 242 (415)
.+..+. + ++....|++|++..+.+... .... +. ....+..++|+|+++++.+...+
T Consensus 134 ~~~~~~-p--~~~~~~~~~g~~~~~~~~~~~~~~~--------------~~-~~~~~~~~~giy~~~~~~l~~~~----- 190 (228)
T 1ezi_A 134 CPMEHH-P--LKTLLQINNGEYAPMRHLSDLEQPR--------------QQ-LPQAFRPNGAIYINDTASLIANN----- 190 (228)
T ss_dssp EECSSC-T--TSCEEECC--CEEESSCHHHHTCCG--------------GG-SCCEEEEEEEEEEEEHHHHHHHT-----
T ss_pred EecCCC-c--ceeeEEcCCCcEeeccccccccCCc--------------cc-CchhheeeeEEEEEeHHHHhhCC-----
Confidence 776541 2 33333467788888765211 0000 00 00123467899999998775321
Q ss_pred CCCcccccchhhhcccceEEEEEeC-ceEEecCCHHHHHHHHHhhc
Q 014953 243 TANDFGSEIIPASANEQFLKAYLFN-DYWEDIGTIRSFFEANLALT 287 (415)
Q Consensus 243 ~~~~~~~~~l~~l~~~~~i~~~~~~-g~~~di~t~~~y~~an~~~l 287 (415)
. ..+.++..+..+ .+|.||+||+||..|+..+.
T Consensus 191 -------~-----~~g~~v~~~~~~~~~~~dIdtpeDl~~a~~~l~ 224 (228)
T 1ezi_A 191 -------C-----FFIAPTKLYIMSHQDSIDIDTELDLQQAENILN 224 (228)
T ss_dssp -------S-----SCCSSCEEEECCTGGGCCCCSHHHHHHHHHHHC
T ss_pred -------c-----ccCCceEEEEeCcccccCCCCHHHHHHHHHHHH
Confidence 0 115677778776 58999999999999987654
|
| >2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19 | Back alignment and structure |
|---|
Probab=99.80 E-value=9.7e-21 Score=170.84 Aligned_cols=200 Identities=14% Similarity=0.155 Sum_probs=135.7
Q ss_pred ceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCC
Q 014953 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGD 87 (415)
Q Consensus 8 ~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~ 87 (415)
+|.|||||||. |||++.+...||+|+|++|+ |||+|+++.+..+++ +|+|++.+ +.+.+++
T Consensus 2 ~~~~vIlAaG~-tRl~~r~~~~~K~l~~i~g~-pll~~~l~~l~~~~~-~ivvv~~~--~~i~~~~-------------- 62 (232)
T 2dpw_A 2 RPSAIVLAGGK-EAWAERFGVGSKALVPYRGR-PMVEWVLEALYAAGL-SPVYVGEN--PGLVPAP-------------- 62 (232)
T ss_dssp CCEEEEECCCB-CSGGGTTTCSBGGGSEETTE-ETHHHHHHHHHHTTC-EEEEESCC--SSCSSCC--------------
T ss_pred ceeEEEECCCC-CccccccCCCCceeeEECCE-EHHHHHHHHHHhcCC-EEEEEeCh--HHHhhhc--------------
Confidence 58899999999 88877766689999999999 999999999999998 88887543 3322111
Q ss_pred ceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe--ecccChHHHHHHHHHcCCcEEEEEEE
Q 014953 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGADITISCLP 165 (415)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~--i~~~~l~~~l~~h~~~~~~~ti~~~~ 165 (415)
.+.+ . . ..|++++++.++.++. +.|++++||+ +...++..+++ | +.++++++...+
T Consensus 63 -~~~~--~-~---------~~g~~~~i~~a~~~~~-------~~~lv~~~D~P~~~~~~i~~l~~-~-~~~~~~~~~~~~ 120 (232)
T 2dpw_A 63 -ALTL--P-D---------RGGLLENLEQALEHVE-------GRVLVATGDIPHLTEEAVRFVLD-K-APEAALVYPIVP 120 (232)
T ss_dssp -SEEE--C-C---------CSSHHHHHHHHHHTCC-------SEEEEEETTCTTCCHHHHHHHHH-H-CCSCSEEEEEEE
T ss_pred -CeEe--c-C---------CCCHHHHHHHHHHHcC-------CCEEEEeCCcccCCHHHHHHHHh-c-CCCCCEEEEEee
Confidence 1333 1 1 2599999999987762 6899999999 44556889998 6 566777777766
Q ss_pred cCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhh-----
Q 014953 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR----- 240 (415)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~----- 240 (415)
.++. ...|+.+ .+++..+.||| .+++|+|+|+++++..+.+..
T Consensus 121 ~~~~-~~~~~~~----~~~v~~~~ek~---------------------------~~~~g~~~~~~~~l~~~~~~~~~~~~ 168 (232)
T 2dpw_A 121 KEAV-EARFPRT----KRTYARLREGT---------------------------FTGGNLLLLDKSLFRKALPLARRVVA 168 (232)
T ss_dssp HHHH-HHHCTTC----CCCCEEETTEE---------------------------EEECSEEEEEHHHHTTTHHHHHHHHH
T ss_pred ccch-hhhCCCc----ceeEEEEecCc---------------------------eeeeeEEEEcHHHHHHHHHHHHHHHH
Confidence 4321 0223321 23455554432 367899999999876543311
Q ss_pred CCC-------------------CCcccccchhhhcc--cceEEEEEeC--ceEEecCCHHHHH
Q 014953 241 FPT-------------------ANDFGSEIIPASAN--EQFLKAYLFN--DYWEDIGTIRSFF 280 (415)
Q Consensus 241 ~~~-------------------~~~~~~~~l~~l~~--~~~i~~~~~~--g~~~di~t~~~y~ 280 (415)
... ......+++..+.. +.++..+..+ +.|.|||||+||.
T Consensus 169 ~~~~P~~~~~~~~~~~l~~~~~ge~~l~~~~~~~~~~~g~~v~~v~~~~~~~~~dIdtpeDl~ 231 (232)
T 2dpw_A 169 LRKRPLALARLVGWDVLLKLLLGRLSLAEVEARAQRILGVEARALVTPYPEVGVDVDREEDLV 231 (232)
T ss_dssp TTTCHHHHHHHHCHHHHHHHHHTCCCHHHHHHHHHHHHSSCEEEEECSCGGGTCCCCSHHHHC
T ss_pred hccCHHHHHHHHCHHHHHHHHhccCCHHHHHHHHHHHhCcEEEEEecCChhhccCCCChhhcc
Confidence 000 01122344444432 4688888884 6799999999984
|
| >2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.5e-18 Score=169.14 Aligned_cols=339 Identities=12% Similarity=0.111 Sum_probs=199.0
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeC-Ccceeehhehhhhhcc----CCc-EEEEEcc-cChhHHHHHHHhhcc
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIG-GAYRLIDVPMSNCINS----GIN-KVYILTQ-YNSASLNRHLARAYN 78 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~-g~~pli~~~l~~l~~~----gi~-~I~vv~~-~~~~~i~~~l~~~~~ 78 (415)
..++.+||||||.||||+ .+.||+|+||+ |+ ||++|+++++... |+. .++|+++ +..+.+.+++.+...
T Consensus 90 ~~k~avViLAGG~GTRmg---s~~PK~l~~V~~gk-~~Le~~i~~i~~l~~~~G~~Ip~vImts~~t~e~t~~~~~~~~~ 165 (488)
T 2i5k_A 90 LSKLAVLKLNGGLGTSMG---CVGPKSVIEVREGN-TFLDLSVRQIEYLNRQYDSDVPLLLMNSFNTDKDTEHLIKKYSA 165 (488)
T ss_dssp GGGEEEEEECCCBSGGGT---CCSBSTTSCCBTTB-CHHHHHHHHHHHHHHHHTCCCEEEEECCTTTHHHHHHHHGGGCS
T ss_pred cCCceEEEEcCCCcccCC---CCCCccccccCCCC-cHHHHHHHHHHHhHHhcCCCccEEEEECCCCHHHHHHHHHhccc
Confidence 467889999999999998 78999999999 99 9999999999876 533 3666666 888999999976322
Q ss_pred CCCCcccCCceEEEecCccC---------------CCC--CCCccccchHHHHHHh-----hhhhcCCCCCCcCeEEEEc
Q 014953 79 YGSGVTFGDGCVEVLAATQT---------------PGE--AGKRWFQGTADAVRQF-----HWLFEDPRNKVIEDVLILS 136 (415)
Q Consensus 79 ~~~~~~~~~~~v~i~~~~~~---------------~~~--~~~~~~~Gt~~al~~~-----~~~i~~~~~~~~~~~lv~~ 136 (415)
++ .. +.++ .|. ... .-...+.|||+++... ++.+.. ...++++|++
T Consensus 166 fg------~~-i~~f--~Q~~~P~i~~d~~~~l~~~~~~~~~~~~P~GtGga~~~L~~sg~l~~l~~---~g~~~v~V~n 233 (488)
T 2i5k_A 166 NR------IR-IRSF--NQSRFPRVYKDSLLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIA---QGREILFVSN 233 (488)
T ss_dssp SS------CE-EEEE--CCCCEECEETTTCCBSCSSSSSCTTSEECCCGGGHHHHHHHHTHHHHHHH---TTCCEEEEEC
T ss_pred cC------ce-EEEE--EeCccceEccccceeeccCCCCCceeeecCCCchhhhhhhhcCcHHHHHh---cCCCEEEEEe
Confidence 22 11 2211 111 000 0012467999999733 344421 1258999999
Q ss_pred CCeecc-cChHHHHHHHHHcCCcEEEEEEEcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccc
Q 014953 137 GDHLYR-MDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAE 215 (415)
Q Consensus 137 gD~i~~-~~l~~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~ 215 (415)
||+++. .|+. ++.+|.++++++++.+.+.+++ ...||.+..+ +|+ ..+.|..+.+....-.+ .. .
T Consensus 234 gDnL~~~~d~~-~L~~~~~~~a~~t~~v~~~~~p-~~~yG~Iv~~-dG~-~~iVE~~e~~~e~~~~~---------~~-~ 299 (488)
T 2i5k_A 234 GDNLGATVDLK-ILNHMIETGAEYIMELTDKTRA-DVKGGTLISY-DGQ-VRLLEVAQVPKEHIDEF---------KN-I 299 (488)
T ss_dssp TTBSSCCCCHH-HHHHHHHSCCSEEEEEEECCGG-GSSSCEEEEE-TTE-EEEECGGGSCTTSHHHH---------TC-T
T ss_pred CCcCCCcccHH-HHHHHHhcCCcEEEEEEEecCC-CCceeEEEEE-CCc-EEEEEeccCCHHHHhhc---------cc-c
Confidence 999776 4675 6799999999999999887652 2459988775 566 44554322221000000 00 0
Q ss_pred cccceeeeeEEEEeHHHHHHHHhhhC---CC------------------CCcccccchhhhcccceEEEEEeC-ceEEec
Q 014953 216 EKPYIASMGVYLFKKEILLNLLRWRF---PT------------------ANDFGSEIIPASANEQFLKAYLFN-DYWEDI 273 (415)
Q Consensus 216 ~~~~l~~~Giyi~~~~~l~~~l~~~~---~~------------------~~~~~~~~l~~l~~~~~i~~~~~~-g~~~di 273 (415)
......++|+|+|+.++|..+++... +. .+.|+.|+++.. + ...++.++ ..|..+
T Consensus 300 ~~~~~~Ntgi~~f~~~~L~~~l~~~~~~lp~~v~~K~i~~~~~~~~~~qlE~~~~d~~~~~-~--~~~~~~V~R~~F~Pv 376 (488)
T 2i5k_A 300 RKFTNFNTNNLWINLKAVKRLIESSNLEMEIIPNQKTITRDGHEINVLQLETACGAAIRHF-D--GAHGVVVPRSRFLPV 376 (488)
T ss_dssp TTCCEEEEEEEEEEHHHHHHHHHTTCCCCCCBCCEECCCC-----CEECCBCCGGGGGGGS-S--SCEEEEECGGGCCBC
T ss_pred cccCEEEEEEEEEeHHHHHHHHhhccCCCcceecCccccCCCCCCceEEeeehhhhHHhhc-c--CceEEEecccccccc
Confidence 12356799999999999988877521 10 012223333322 1 22334432 247888
Q ss_pred CCHHHHHHHHHhhcCCCCCCCccCCCCCccccCccCCCeeecC--Ccccc--ceECC-CCEEcceEEeeeEEccCcEECC
Q 014953 274 GTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKIDD--SKIVD--SIISH-GSFITSSFIEHSVVGIRSRINA 348 (415)
Q Consensus 274 ~t~~~y~~an~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~i~~--~~i~~--~~ig~-~~~I~~~~i~~svig~~~~ig~ 348 (415)
.+..+++.+..++...........+.. ..+.|-+.+.+ ..+++ ..+.. -..++ ...=.|--+++.|+
T Consensus 377 Kn~~~ll~~~~~~~~~~~g~~~~~~~~-----~e~~P~v~~~~~~~~~~~~~~rf~~~p~i~~---~~~l~v~Gdv~fg~ 448 (488)
T 2i5k_A 377 KTCSDLLLVKSDLFRLEHGSLKLDPSR-----FGPNPLIKLGSHFKKVSGFNARIPHIPKIVE---LDHLTITGNVFLGK 448 (488)
T ss_dssp CSHHHHHHHTSTTEEEETTEEEECTTC-----CSSCCEEEECGGGSSHHHHHHHCSSCCBCTT---EEEEEEESSEEECT
T ss_pred cCCccHHHHHHHHHHHhcCcEeecCCc-----CCCCCeEEECCcccchhhHHhhcCCCccccc---cceEEEEeeeEEcC
Confidence 888888777665432211111111110 11223333311 11111 11111 22222 12335555788888
Q ss_pred CcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEeeeEECCCeEE
Q 014953 349 NVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKYEQLKPICHI 399 (415)
Q Consensus 349 ~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~~i~~~~~i 399 (415)
++.+.++++.... -++ +..|-+|++++|.++..+..|
T Consensus 449 ~v~l~G~v~i~a~-----------~~~---~~~ip~g~~l~n~~~~~~~~~ 485 (488)
T 2i5k_A 449 DVTLRGTVIIVCS-----------DGH---KIDIPNGSILENVVVTGNLQI 485 (488)
T ss_dssp TCEEEEEEEEECC-----------TTC---CEEECTTCEEEEEEEEEEEEE
T ss_pred CcEEEEEEEEEcC-----------CCC---eEEeCCCCEEecceeeccccc
Confidence 9999887765431 011 267899999998877766665
|
| >1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=99.80 E-value=6.5e-19 Score=158.52 Aligned_cols=217 Identities=16% Similarity=0.186 Sum_probs=135.3
Q ss_pred cceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccC-CcEEEEEcccChhHHHHHHHhhccCCCCccc
Q 014953 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~g-i~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (415)
+++.|||||+|.|+||. +|+|+|++|+ |||+|+++.+.+++ +++|+|++. .+.+.+++.+ +
T Consensus 2 ~~~~aiIlA~G~s~R~~------~K~l~~i~Gk-pli~~~i~~~~~~~~~~~ivv~~~--~~~i~~~~~~-~-------- 63 (229)
T 1qwj_A 2 PHLAALVLARGGSKGIP------LKNIKRLAGV-PLIGWVLRAALDAGVFQSVWVSTD--HDEIENVAKQ-F-------- 63 (229)
T ss_dssp CCEEEEEECCSCCSSSS------CTTTSEETTE-EHHHHHHHHHHHHTCCSEEEEEES--CHHHHHHHHH-T--------
T ss_pred CcEEEEEEcCCCCCCCC------CcccceECCE-EHHHHHHHHHHhCCCcCEEEEECC--hHHHHHHHHH-c--------
Confidence 46889999999999994 5999999999 99999999999998 699999884 4566666542 1
Q ss_pred CCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecc-cChHHHHHHHHHcCCcEEEEE
Q 014953 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYR-MDYMDFVQNHRQSGADITISC 163 (415)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~-~~l~~~l~~h~~~~~~~ti~~ 163 (415)
+.. + +....... .+ ..+..++++.++..+.. .+.|++++||. +.+ .++..+++.|.+.+++.++.+
T Consensus 64 g~~-~-~~~~~~~~----~~-~~~~~~~v~~al~~~~~-----~d~vlv~~~D~Pli~~~~i~~l~~~~~~~~~~~~~~~ 131 (229)
T 1qwj_A 64 GAQ-V-HRRSSETS----KD-SSTSLDAIVEFLNYHNE-----VDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSV 131 (229)
T ss_dssp TCE-E-EECCGGGS----ST-TCCHHHHHHHHHTTCTT-----CSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEE
T ss_pred CCE-E-EeChhhhc----CC-CCcHHHHHHHHHHhcCC-----CCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 111 1 22111100 00 12445888888876632 57899999999 444 458999999988877766555
Q ss_pred EEcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC
Q 014953 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (415)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~ 243 (415)
.+..+ +..+++ .| + +..|.+++...... ..+.+.....+..++|+|+++++.| +.
T Consensus 132 ~~~~~--p~~~~v--~~--~-~~~~~~~~~~~~~~----------~~~~~~~~~~~~~n~giY~~~~~~l---~~----- 186 (229)
T 1qwj_A 132 VRRHQ--FRWSEI--QK--G-VREVTEPLNLNPAK----------RPRRQDWDGELYENGSFYFAKRHLI---EM----- 186 (229)
T ss_dssp EEECC--CEECCC--CS--S-TTCCCCBSSSBTTB----------CCCTTTSCCEEEEEEEEEEEEHHHH---HT-----
T ss_pred eeccC--hhHhhc--cc--c-cccccccccccccc----------ccCCCCCCceEEEeeEEEEEEHHHh---cc-----
Confidence 44332 233322 22 2 21122111100000 0000000013567999999999887 11
Q ss_pred CCcccccchhhhcccceEEEEEeC-ceEEecCCHHHHHHHHHhhcC
Q 014953 244 ANDFGSEIIPASANEQFLKAYLFN-DYWEDIGTIRSFFEANLALTA 288 (415)
Q Consensus 244 ~~~~~~~~l~~l~~~~~i~~~~~~-g~~~di~t~~~y~~an~~~l~ 288 (415)
.+..+..+..+..+ ++|.||+|++||..|+..+..
T Consensus 187 ----------~~~~g~~~~~~~~~~~~~~dIdt~~Dl~~a~~~~~~ 222 (229)
T 1qwj_A 187 ----------GYLQGGKMAYYEMRAEHSVDIDVDIDWPIAEQRVLR 222 (229)
T ss_dssp ----------TCSSCSSEEEEECCGGGCCCHHHHCSHHHHHHHHHH
T ss_pred ----------ccccCCeEEEEECCcccccCCCCHHHHHHHHHHHHH
Confidence 11233444332555 689999999999999887643
|
| >1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A | Back alignment and structure |
|---|
Probab=99.79 E-value=2.3e-18 Score=155.65 Aligned_cols=219 Identities=14% Similarity=0.130 Sum_probs=139.7
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccC-CcEEEEEcccChhHHHHHHHhhccCCCCcc
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVT 84 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~g-i~~I~vv~~~~~~~i~~~l~~~~~~~~~~~ 84 (415)
+++|.|||||||.|+||+ ...||+|+|++|+ |||+|+++.+.+++ +++|+|++++..+.+.+ +..
T Consensus 5 ~~~~~~iIlA~G~g~R~~---~~~~K~l~~i~g~-pll~~~i~~l~~~~~~~~ivvv~~~~~~~~~~-~~~--------- 70 (236)
T 1i52_A 5 HLDVCAVVPAAGFGRRMQ---TECPKQYLSIGNQ-TILEHSVHALLAHPRVKRVVIAISPGDSRFAQ-LPL--------- 70 (236)
T ss_dssp CCCEEEEEEECCCCGGGC---CSSCGGGSEETTE-EHHHHHHHHHHTSTTEEEEEEEECTTCCSGGG-SGG---------
T ss_pred CCceeEEEECCcCccccC---CCCCcceeeECCE-EHHHHHHHHHHhCCCCCeEEEEeCccHHHHHH-HHh---------
Confidence 456899999999999997 4579999999999 99999999999887 89999999987655543 211
Q ss_pred cCCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-eccc-ChHHHHHHHHHcCCcEEEE
Q 014953 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRM-DYMDFVQNHRQSGADITIS 162 (415)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~-~l~~~l~~h~~~~~~~ti~ 162 (415)
++...+.++.. . .|+.++++.++..+.+ .+.+++++||. +.+. .+..+++.+.+.++.. +.
T Consensus 71 ~~~~~v~~~~~--~---------~g~~~~i~~al~~~~~-----~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~-~~ 133 (236)
T 1i52_A 71 ANHPQITVVDG--G---------DERADSVLAGLKAAGD-----AQWVLVHDAARPCLHQDDLARLLALSETSRTGG-IL 133 (236)
T ss_dssp GGCTTEEEEEC--C---------SSHHHHHHHHHHTSTT-----CSEEEECCTTCTTCCHHHHHHHHGGGGTCSSCE-EE
T ss_pred cCCCCEEEECC--C---------CCHHHHHHHHHHhcCC-----CCEEEEEcCccccCCHHHHHHHHHHHHhcCCeE-EE
Confidence 11111333321 1 3788999998877642 47899999998 4454 4788888776654232 33
Q ss_pred EEEcCCCcCCcccEEEECCC-CCeEEEEEcCCcccccccccccccccccccccccccceee-eeEEEEeHHHHHHHHhhh
Q 014953 163 CLPMDDSRASDFGLMKINNE-GRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIAS-MGVYLFKKEILLNLLRWR 240 (415)
Q Consensus 163 ~~~~~~~~~~~~g~v~~d~~-~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Giyi~~~~~l~~~l~~~ 240 (415)
+.+..+ . + ...+++ |++....+. ..+.. -+.++|+.+.+..+++..
T Consensus 134 ~~~~~~--~--~--~~~~~~~~~i~~~~~~--------------------------~~i~~~~~p~~f~~~~l~~~~~~~ 181 (236)
T 1i52_A 134 AAPVRD--T--M--KRAEPGKNAIAHTVDR--------------------------NGLWHALTPQFFPRELLHDCLTRA 181 (236)
T ss_dssp EEECCS--C--E--EEECTTSSSEEEEECC--------------------------TTCEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEeccc--c--E--EEEcCCCCceeeccCh--------------------------HhheeeeCCceecHHHHHHHHHHH
Confidence 334332 1 1 112333 455432211 01111 255678887665555432
Q ss_pred CCCCCccc--ccchhhhcccceEEEEEeCceEEecCCHHHHHHHHHhhcCC
Q 014953 241 FPTANDFG--SEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAH 289 (415)
Q Consensus 241 ~~~~~~~~--~~~l~~l~~~~~i~~~~~~g~~~di~t~~~y~~an~~~l~~ 289 (415)
......+. ..++.. .+.++..+..++.|.||+||+||..|+..+.++
T Consensus 182 ~~~g~~~td~~~~~~~--~~~~v~~v~~~~~~~dIdtpeDl~~a~~~~~~~ 230 (236)
T 1i52_A 182 LNEGATITDEASALEY--CGFHPQLVEGRADNIKVTRPEDLALAEFYLTRT 230 (236)
T ss_dssp HHTTCCCCSHHHHHHH--TTCCCEEEECCTTCCCCCSHHHHHHHHHHHCC-
T ss_pred HhcCCCcccHHHHHHH--cCCCEEEEecCccccccCCHHHHHHHHHHHHHh
Confidence 11111111 112221 146788888888999999999999998876543
|
| >3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-18 Score=152.14 Aligned_cols=130 Identities=24% Similarity=0.331 Sum_probs=93.9
Q ss_pred eEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCc
Q 014953 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (415)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (415)
|+|||||||.|+||+| .||+|+|++|+ |||+|+++++.++++++|+|++++..+.+.+++...+.+..
T Consensus 1 m~aiIlA~G~s~R~~~----~~K~l~~~~g~-pli~~~l~~l~~~~~~~v~vv~~~~~~~i~~~~~~~~~~~~------- 68 (196)
T 3rsb_A 1 MDALIMAGGKGTRMGG----VEKPLIKLCGR-CLIDYVVSPLLKSKVNNIFIATSPNTPKTKEYINSAYKDYK------- 68 (196)
T ss_dssp CEEEEEC----CGGGG----SCGGGCEETTE-EHHHHHHHHHHSSSCCCEEEECCTTCHHHHHHHHHHTTTTT-------
T ss_pred CEEEEECCCCCCcCCC----CCccEEEECCE-EHHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHHhhccCCC-------
Confidence 6899999999999987 89999999999 99999999999999999999999998888888876432211
Q ss_pred eEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe--ecccChHHHHHHHHH-----cCCcEEE
Q 014953 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQ-----SGADITI 161 (415)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~--i~~~~l~~~l~~h~~-----~~~~~ti 161 (415)
.+.++... ..|++++++.++..+ .+.|++++||. +....+.++++.|.+ .+.+..+
T Consensus 69 ~~~~~~~~----------~~g~~~si~~al~~~-------~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~ 131 (196)
T 3rsb_A 69 NIVVIDTS----------GKGYIEDLNECIGYF-------SEPFLVVSSDLINLKSKIINSIVDYFYCIKAKTPDVEALA 131 (196)
T ss_dssp EEEE------------------CCCCCTTTTTC-------SSCEEEEETTEESCCHHHHHHHHHHHHHHHTTCC--CEEE
T ss_pred CEEEEECC----------CCCcHHHHHHHHHhC-------CCCEEEEeCCcccCCHHHHHHHHHHHHhhhcccCCCceEE
Confidence 13333211 147888888887665 37999999999 344558999999987 5566666
Q ss_pred EEEEcC
Q 014953 162 SCLPMD 167 (415)
Q Consensus 162 ~~~~~~ 167 (415)
++.+..
T Consensus 132 ~~~p~~ 137 (196)
T 3rsb_A 132 VMIPKE 137 (196)
T ss_dssp EEEETT
T ss_pred EEEEcc
Confidence 666654
|
| >2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A | Back alignment and structure |
|---|
Probab=99.75 E-value=4e-18 Score=149.56 Aligned_cols=121 Identities=14% Similarity=0.249 Sum_probs=89.7
Q ss_pred cceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccC
Q 014953 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (415)
++|.|||||||.|+||. .||+|+|++|+ |||+|+++++.++++++|+|++++..+.+.+++.. ++
T Consensus 4 ~~~~~iIlA~G~~~R~g-----~~K~l~~~~g~-pll~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~---------~~ 68 (197)
T 2wee_A 4 TQITGVVLAAGRSNRLG-----TPKQLLPYRDT-TVLGATLDVARQAGFDQLILTLGGAASAVRAAMAL---------DG 68 (197)
T ss_dssp SEEEEEEEECCCCTTTS-----SCGGGSEETTE-EHHHHHHHHHHHTTCSEEEEEECTTHHHHHHHSCC---------TT
T ss_pred CceEEEEECCCCcccCC-----CCeEcCeeCCc-cHHHHHHHHHHhcCCCcEEEEeCCCHHHHHHHhcc---------CC
Confidence 45889999999999995 89999999999 99999999999999999999999887666655421 11
Q ss_pred CceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecc-cChHHHHHHHHHcCCcE
Q 014953 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYR-MDYMDFVQNHRQSGADI 159 (415)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~-~~l~~~l~~h~~~~~~~ 159 (415)
+.++.... +..|++++++.++.++.. ..+.+++++||. +.+ ..+..+++. +.++++
T Consensus 69 ---~~~~~~~~--------~~~g~~~~i~~al~~~~~----~~~~vlv~~~D~P~~~~~~i~~l~~~--~~~~~i 126 (197)
T 2wee_A 69 ---TDVVVVED--------VERGCAASLRVALARVHP----RATGIVLMLGDQPQVAPATLRRIIDV--GPATEI 126 (197)
T ss_dssp ---SEEEECC------------CCHHHHHHHHTTSCT----TEEEEEEEETTCTTCCHHHHHHHHHH--GGGSSE
T ss_pred ---CEEEECCC--------cccCHHHHHHHHHHHhcc----cCCeEEEEeCCcCCCCHHHHHHHHhh--cCCCCE
Confidence 22332111 125899999999877631 147899999999 444 447888876 344443
|
| >2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-17 Score=145.77 Aligned_cols=187 Identities=12% Similarity=0.164 Sum_probs=126.4
Q ss_pred cceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccC
Q 014953 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (415)
+++.|||||||.|+||+ .||+|+|++|+ |||+|+++.+..+++++|+|++++..+++.+++.. ++
T Consensus 4 ~~~~~iIlA~G~~~R~g-----~~K~l~~~~g~-pli~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~---------~~ 68 (199)
T 2waw_A 4 SRVTGVVLAAGYSRRLG-----TPKQLLPLGDT-TLLGATLAMARRCPFDQLIVTLGGAADEVLEKVEL---------DG 68 (199)
T ss_dssp CCEEEEEEESSCCTTTT-----SCGGGCEETTE-EHHHHHHHHHHTSSCSEEEEEECTTHHHHHHHSCC---------TT
T ss_pred CceEEEEECCCCCCCCC-----CCEEeCEeCcc-CHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhcc---------CC
Confidence 45899999999999996 79999999999 99999999999999999999999877666655421 11
Q ss_pred CceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeec--ccChHHHHHHHHHcCCcEEEEEE
Q 014953 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLY--RMDYMDFVQNHRQSGADITISCL 164 (415)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~--~~~l~~~l~~h~~~~~~~ti~~~ 164 (415)
+.++.... +..|++++++.++.++.. ..+.+++++||..+ ..++..+++. +.++++++...
T Consensus 69 ---~~~~~~~~--------~~~g~~~~i~~al~~~~~----~~~~vlv~~~D~P~~~~~~i~~l~~~--~~~~~~~~~~~ 131 (199)
T 2waw_A 69 ---LDIVLVDD--------AGLGCSSSLKSALTWVDP----TAEGIVLMLGDQPGITASAVASLIAG--GRGATIAVCEY 131 (199)
T ss_dssp ---SEEEECCC--------CCTTCCCHHHHHHHTSCT----TCSEEEEEETTCTTCCHHHHHHHHHH--HTTCSEEEEEE
T ss_pred ---CEEEECCC--------cccCHHHHHHHHHHhhhc----cCCeEEEEeCCcccCCHHHHHHHHhh--cCCCCEEEEec
Confidence 22332111 125889999999887731 14789999999943 4457888876 44444432211
Q ss_pred EcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCC
Q 014953 165 PMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA 244 (415)
Q Consensus 165 ~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~~ 244 (415)
+++ + . .-++|+++.+..+.. . ...
T Consensus 132 -----------------~g~-------~---~---------------------------~P~~~~~~~l~~~~~-~-~~~ 155 (199)
T 2waw_A 132 -----------------ANG-------I---G---------------------------HPFWVSRGVFGDLAE-L-HGD 155 (199)
T ss_dssp -----------------TTE-------E---E---------------------------EEEEEEGGGHHHHHT-C-SST
T ss_pred -----------------CCc-------c---c---------------------------CCEEEcHHHHHHHHh-c-CCC
Confidence 111 0 0 002667776655442 1 111
Q ss_pred Ccccccchhhhccc--ceEEEEEe-CceEEecCCHHHHHHHHHhh
Q 014953 245 NDFGSEIIPASANE--QFLKAYLF-NDYWEDIGTIRSFFEANLAL 286 (415)
Q Consensus 245 ~~~~~~~l~~l~~~--~~i~~~~~-~g~~~di~t~~~y~~an~~~ 286 (415)
. . +..++.. .++..++. .++|.||+||+||..++..+
T Consensus 156 ~----~-~~~~l~~~~~~v~~~~~~~~~~~dIdtpeDl~~~~~~~ 195 (199)
T 2waw_A 156 K----G-VWRLIESGRHGVRRIRVDADVPLDVDTWDDYERLLASV 195 (199)
T ss_dssp T----C-HHHHHHSSSSCEEEEECSSCCCCCCSSHHHHHHHHHHH
T ss_pred H----H-HHHHHHhCcccEEEEEcCcccccCCCCHHHHHHHHHHH
Confidence 1 1 2233332 46777777 46899999999999998765
|
| >2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=99.74 E-value=8.5e-18 Score=151.87 Aligned_cols=206 Identities=13% Similarity=0.054 Sum_probs=125.6
Q ss_pred ceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCC
Q 014953 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGD 87 (415)
Q Consensus 8 ~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~ 87 (415)
++.|||||||.|+||++ . ||+|+|++|+ |||+|+++. ..++++|+|++++. +.+ + .. .
T Consensus 25 ~~~aiILAgG~s~Rm~~---~-~K~l~~i~gk-pli~~~l~~--~~~~~~ivvv~~~~---~~~-~------~~---~-- 82 (236)
T 2px7_A 25 EVSVLIPAAGNGLRLGR---G-PKAFLQVGGR-TLLEWTLAA--FRDAAEVLVALPPG---AEP-P------KG---L-- 82 (236)
T ss_dssp CCEEEEECCC----------C-CGGGCBCSSS-BHHHHHHHH--TTTCSEEEEEECTT---CCC-C------TT---C--
T ss_pred ceEEEEEcCCCCccCCC---C-CCeEEEECCE-EHHHHHHHh--cCCCCeEEEEeCHH---HHH-h------hc---C--
Confidence 45699999999999983 3 9999999999 999999999 67899999999851 111 1 10 0
Q ss_pred ceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-eccc-ChHHHHHHHHHcCCcEEEEEEE
Q 014953 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRM-DYMDFVQNHRQSGADITISCLP 165 (415)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~-~l~~~l~~h~~~~~~~ti~~~~ 165 (415)
.+.++.. . .|+.++++.++..+. .+.+++++||. +++. .+..+++.+.+.++ .+.+.+
T Consensus 83 -~v~~~~~--~---------~~~~~~i~~al~~~~------~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~--~i~~~~ 142 (236)
T 2px7_A 83 -GAVFLEG--G---------ATRQASVARLLEAAS------LPLVLVHDVARPFVSRGLVARVLEAAQRSGA--AVPVLP 142 (236)
T ss_dssp -SCEEEEC--C---------SSHHHHHHHHHHHCC------SSEEEECCTTCCCCCHHHHHHHHHHHHHHSE--EEEEEE
T ss_pred -CcEEEeC--C---------CchHHHHHHHHHHcC------CCeEEEecCccccCCHHHHHHHHHHHHhcCC--eEEEEe
Confidence 1233211 1 367888988887764 37899999998 5454 47889988876543 344444
Q ss_pred cCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCC
Q 014953 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAN 245 (415)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~~~ 245 (415)
..+ ... ..+ +|++..+.++.. .+... ..++|+++.|..+++.......
T Consensus 143 ~~~--~~~----~~~-~G~v~~~~~~~~------------------------~~~~~-~~~~f~~~~l~~~~~~~~~~g~ 190 (236)
T 2px7_A 143 VPD--TLM----APE-GEAYGRVVPREA------------------------FRLVQ-TPQGFFTALLREAHAYARRKGL 190 (236)
T ss_dssp CCS--EEE----EEC-SSSCEEEECGGG------------------------CEEEC-SCEEEEHHHHHHHHHHHHHHTC
T ss_pred cCC--cEE----Eec-CCeEEecCChHh------------------------hcccc-CCeEEcHHHHHHHHHHHHhcCC
Confidence 433 111 124 677765543211 01222 2567888877655543211000
Q ss_pred cccccchhhhc-ccceEEEEEeCceEEecCCHHHHHHHHHhhcC
Q 014953 246 DFGSEIIPASA-NEQFLKAYLFNDYWEDIGTIRSFFEANLALTA 288 (415)
Q Consensus 246 ~~~~~~l~~l~-~~~~i~~~~~~g~~~di~t~~~y~~an~~~l~ 288 (415)
. ..+....+. .+.++..+..++.|.||+||+||..|+..+.+
T Consensus 191 ~-~~d~~~ll~~~~~~v~~v~~~~~~~dIdtpeDl~~a~~~l~~ 233 (236)
T 2px7_A 191 E-ASDDAQLVQALGYPVALVEGEATAFKITHPQDLVLAEALARV 233 (236)
T ss_dssp C-CSSHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHHTC
T ss_pred C-chhHHHHHHHcCCcEEEEECCccccCCCCHHHHHHHHHHHHh
Confidence 1 111111111 24578888888899999999999999876643
|
| >3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-16 Score=142.44 Aligned_cols=218 Identities=17% Similarity=0.169 Sum_probs=146.3
Q ss_pred cceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccC-CcEEEEEcccCh-hHHHHHHHhhccCCCCcc
Q 014953 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNS-ASLNRHLARAYNYGSGVT 84 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~g-i~~I~vv~~~~~-~~i~~~l~~~~~~~~~~~ 84 (415)
.++.|||||||.|+||. ...||+|+|++|+ |||+|+++.+.+++ +++|+|++++.. +.+.+++..
T Consensus 6 ~~~~aIIlAaG~g~Rmg---~~~~K~l~~l~Gk-pll~~~l~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~--------- 72 (231)
T 3q80_A 6 GEVVAIVPAAGSGERLA---VGVPKAFYQLDGQ-TLIERAVDGLLDSGVVDTVVVAVPADRTDEARQILGH--------- 72 (231)
T ss_dssp CCEEEEEECCCCCTTTC---SSSCGGGCEETTE-EHHHHHHHHHHHTSCCCEEEEEECGGGHHHHHHHHGG---------
T ss_pred CceEEEEECCCCCccCC---CCCCceEEEECCe-EHHHHHHHHHHhCCCCCeEEEECChHHHHHHHHHhcC---------
Confidence 36889999999999997 5689999999999 99999999999874 899999998876 444444321
Q ss_pred cCCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHHHHHcCCcEEEE
Q 014953 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITIS 162 (415)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~h~~~~~~~ti~ 162 (415)
.+.++... .+..++++.++..+.+. ...+.++++.||. +...+ +..+++.+.+ +.+..+.
T Consensus 73 ----~v~~v~gg-----------~~r~~sv~~gl~~~~~~--~~~d~Vlv~~~d~Pli~~~~i~~li~~~~~-~~~~~i~ 134 (231)
T 3q80_A 73 ----RAMIVAGG-----------SNRTDTVNLALTVLSGT--AEPEFVLVHDAARALTPPALVARVVEALRD-GYAAVVP 134 (231)
T ss_dssp ----GCEEEECC-----------SSHHHHHHHHHGGGC-----CCSEEEECCTTCTTCCHHHHHHHHHHHHT-TCSEEEE
T ss_pred ----CeEEEcCC-----------CchHHHHHHHHHHhhhc--CCCCEEEEEcCCcCCCCHHHHHHHHHHHhh-cCCeEEE
Confidence 12232211 24578899998877531 0136899999999 55544 7888888765 2455666
Q ss_pred EEEcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCC
Q 014953 163 CLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP 242 (415)
Q Consensus 163 ~~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~ 242 (415)
..+..++ - ...+++|.|....+. .. -+.+.+ -+.|+.+.|...++....
T Consensus 135 ~~p~~dt--~----~~~~~~g~v~~~~~r---~~---------------------l~~~qT-Pq~F~~~~L~~a~~~~~~ 183 (231)
T 3q80_A 135 VLPLSDT--I----KAVDANGVVLGTPER---AG---------------------LRAVQT-PQGFTTDLLLRSYQRGSL 183 (231)
T ss_dssp EECCSSC--E----EEECTTSBEEECCCG---GG---------------------EEEECS-CEEEEHHHHHHHHHHHTC
T ss_pred EEeccCC--E----EEEcCCCcEEEecch---hh---------------------eEEEcC-CcEEEHHHHHHHHHHHHh
Confidence 6666552 1 124667777655321 11 133444 489999988877765432
Q ss_pred C-CCcccccchhhh-cccceEEEEEeCceEEecCCHHHHHHHHHhh
Q 014953 243 T-ANDFGSEIIPAS-ANEQFLKAYLFNDYWEDIGTIRSFFEANLAL 286 (415)
Q Consensus 243 ~-~~~~~~~~l~~l-~~~~~i~~~~~~g~~~di~t~~~y~~an~~~ 286 (415)
+ ......|-..-+ ..+.++..++-+..++.|++|+|+..|+..+
T Consensus 184 ~n~~~~~TD~~~~~~~~g~~v~~v~g~~~n~kIt~p~Dl~~ae~~l 229 (231)
T 3q80_A 184 DLPAAEYTDDASLVEHIGGQVQVVDGDPLAFKITTKLDLLLAQAIV 229 (231)
T ss_dssp -----CCSSSHHHHHHTTCCCEEEECCGGGCCCCSHHHHHHHHHHH
T ss_pred hcCCCCCCcHHHHHHHcCCcEEEEECCccccCcCCHHHHHHHHHHh
Confidence 1 111223333222 2367788877777789999999999998754
|
| >1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-16 Score=143.04 Aligned_cols=212 Identities=17% Similarity=0.190 Sum_probs=133.9
Q ss_pred cceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccC-CcEEEEEcccChhHH-HHHHHhhccCCCCcc
Q 014953 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASL-NRHLARAYNYGSGVT 84 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~g-i~~I~vv~~~~~~~i-~~~l~~~~~~~~~~~ 84 (415)
-.|.|||||||.|+||+ ...||+|+|++|+ |||+|+++++.+++ +++|+|++++..... .+++ .
T Consensus 12 ~~~~aiILAaG~s~Rm~---~~~~K~l~~i~Gk-pli~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~------~---- 77 (234)
T 1vpa_A 12 HMNVAILLAAGKGERMS---ENVPKQFLEIEGR-MLFEYPLSTFLKSEAIDGVVIVTRREWFEVVEKRV------F---- 77 (234)
T ss_dssp CCEEEEEEECCCCGGGC---CSSCGGGCEETTE-ETTHHHHHHHHHCTTCSEEEEEECGGGHHHHHTTC------C----
T ss_pred ccCeEEEEcCcchhhcC---CCCCceEEEECCe-EHHHHHHHHHHcCCCCCeEEEEEChHHHHHHHHHh------c----
Confidence 35889999999999997 3579999999999 99999999999988 899999998876433 2211 1
Q ss_pred cCCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-eccc-ChHHHHHHHHHcCCcEEEE
Q 014953 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRM-DYMDFVQNHRQSGADITIS 162 (415)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~-~l~~~l~~h~~~~~~~ti~ 162 (415)
+.. .+... .. | .+..++++.++..+... ..+.+++++||. +... .+..+++.+.+.++ .++
T Consensus 78 ~~~-~~~~~---~g----g----~~~~~sv~~al~~~~~~---~~~~vlv~~~D~Pli~~~~i~~l~~~~~~~~~--~i~ 140 (234)
T 1vpa_A 78 HEK-VLGIV---EG----G----DTRSQSVRSALEFLEKF---SPSYVLVHDSARPFLRKKHVSEVLRRARETGA--ATL 140 (234)
T ss_dssp CTT-EEEEE---EC----C----SSHHHHHHHHHHHHGGG---CCSEEEEEETTSCCCCHHHHHHHHHHHHHHSE--EEE
T ss_pred cCC-ceEEe---CC----C----CcHHHHHHHHHHHhhhc---CCCEEEEecCcccCCCHHHHHHHHHHHHhcCC--EEE
Confidence 111 12110 00 0 13778888888777320 136788889998 4454 48889988876543 343
Q ss_pred EEEcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCC
Q 014953 163 CLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP 242 (415)
Q Consensus 163 ~~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~ 242 (415)
+.+..+. +...+.+| + .+.++.. .+..-.-++|+.+.+..+++...
T Consensus 141 ~~~~~~~------~~~~~~~g-v-~~~~r~~-------------------------~~~~~~p~~f~~~~l~~~~~~~~- 186 (234)
T 1vpa_A 141 ALKNSDA------LVRVENDR-I-EYIPRKG-------------------------VYRILTPQAFSYEILKKAHENGG- 186 (234)
T ss_dssp EEECCSE------EEEEETTE-E-EEECCTT-------------------------EEEEEEEEEEEHHHHHHHHTTCC-
T ss_pred EEecCCc------EEEECCCC-c-ccCChhH-------------------------eeeecCCccccHHHHHHHHHhcC-
Confidence 4444321 22234556 5 4443211 01111334788887766654310
Q ss_pred CCCcccccchhhhc-ccceEEEEEeCceEEecCCHHHHHHHHHhhc
Q 014953 243 TANDFGSEIIPASA-NEQFLKAYLFNDYWEDIGTIRSFFEANLALT 287 (415)
Q Consensus 243 ~~~~~~~~~l~~l~-~~~~i~~~~~~g~~~di~t~~~y~~an~~~l 287 (415)
...+....+. .+.++..+..++.|.||+||+||..|+..+.
T Consensus 187 ----~~~~~~~~~~~~g~~v~~v~~~~~~~dIdtpeDl~~a~~~l~ 228 (234)
T 1vpa_A 187 ----EWADDTEPVQKLGVKIALVEGDPLCFKVTFKEDLELARIIAR 228 (234)
T ss_dssp ----CCSSSHHHHHTTTCCCEEEECCGGGCCCCSTTHHHHHHHHHH
T ss_pred ----CCCcHHHHHHHcCCcEEEEECCchhcCCCCHHHHHHHHHHHh
Confidence 0111111111 1456777777778999999999999987654
|
| >2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-17 Score=160.67 Aligned_cols=103 Identities=10% Similarity=0.080 Sum_probs=59.1
Q ss_pred CeEEEEcCCeeccc--ChHHHHHHHHHcCCcEEEEEEEcCCCcCCcccEEEECC--CCCeEEEEEcCCcccccccccccc
Q 014953 130 EDVLILSGDHLYRM--DYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINN--EGRVLSFSEKPKGKDLKAMAVDTT 205 (415)
Q Consensus 130 ~~~lv~~gD~i~~~--~l~~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d~--~~~v~~~~ek~~~~~~~~~~~~~~ 205 (415)
..=|+-.+|++++. +|.+++++|. +|+.. .+.+..+|+..+++ +++| .|.|||+....
T Consensus 11 ~~~~~~~~dhiy~m~~~l~~i~~~h~-----~tl~g----~~~~~~~Gv~~ld~a~~g~I-~F~ekPk~~~~-------- 72 (374)
T 2iu8_A 11 SSGLVPRGSHMSQSTYSLEQLADFLK-----VEFQG----NGATLLSGVEEIEEAKTAHI-TFLDNEKYAKH-------- 72 (374)
T ss_dssp ----------CCSCCEEHHHHHHHTT-----CEEES----CTTCEECEECCTTTCCTTEE-EECCSSSTHHH--------
T ss_pred ccCcccCccccccCcCcHHHHHHhhC-----CEEEC----CCcceEEEEeccccCCCCeE-EEEeCchhhhh--------
Confidence 34577789999987 8999999985 35553 22356788888874 4566 99999985321
Q ss_pred cccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCCcccccchhhhcccceEEEEEeCceEEe
Q 014953 206 VLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLFNDYWED 272 (415)
Q Consensus 206 ~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~i~~~~~~g~~~d 272 (415)
..+.++|+|+|+++++..+. .| .+.+| ++...+.++|....+|++
T Consensus 73 ------------~~~~~aGiyI~~~~~l~~~~--------~~-~~~~p-l~~~~~~~a~~~~~~~~~ 117 (374)
T 2iu8_A 73 ------------LKSSEAGAIIISRTQFQKYR--------DL-NKNFL-ITSESPSLVFQKCLELFI 117 (374)
T ss_dssp ------------HHTCCCSEEEEEHHHHHTST--------TS-CSCEE-EESSCHHHHHHHHHTTTS
T ss_pred ------------hhcCCcEEEEeChhHhhhcc--------cc-ccceE-EEeCCHHHHHHHHHHHhc
Confidence 14678999999998774221 12 45566 555444444433334443
|
| >2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.66 E-value=6.9e-17 Score=142.18 Aligned_cols=179 Identities=13% Similarity=0.112 Sum_probs=111.1
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCccc
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (415)
++++.|||||||.|+||+ .||+|+|++|+ |||+|+++.+..+ +++|+|++++... +++.
T Consensus 12 ~~~~~~iILA~G~g~Rmg-----~~K~ll~i~g~-pll~~~l~~l~~~-~~~i~vv~~~~~~---~~~~----------- 70 (201)
T 2e8b_A 12 SKVNTCYVLAGGKSKRFG-----EDKLLYEIKGK-KVIERVYETAKSV-FKEVYIVAKDREK---FSFL----------- 70 (201)
T ss_dssp CSCCEEEEEEESSCCCCS-----TTHHHHHHHHH-HHHHHHHHHHHTT-CSEEEEEESCSGG---GGGG-----------
T ss_pred ccCceEEEECCCCCccCC-----CCcccceECce-EHHHHHHHHHHHh-CCEEEEEeCcHHH---hhcC-----------
Confidence 345789999999999997 79999999999 9999999999988 8999999987754 1110
Q ss_pred CCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCee-cccC-hHH-HHHHHHHcCCcEEEE
Q 014953 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHL-YRMD-YMD-FVQNHRQSGADITIS 162 (415)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i-~~~~-l~~-~l~~h~~~~~~~ti~ 162 (415)
+ +.++..... ..|++++++.++..+. .+.+++++||+. .+.+ +.. ++ +.++++.
T Consensus 71 ~---~~~v~~~~~--------~~g~~~~i~~al~~~~------~~~~lv~~~D~P~i~~~~i~~~l~------~~~~~v~ 127 (201)
T 2e8b_A 71 N---APVVLDEFE--------ESASIIGLYTALKHAK------EENVFVLSGDLPLMKKETVLYVLE------NFKEPVS 127 (201)
T ss_dssp T---CCEEECCCS--------SCCHHHHHHHHHHHCS------SSEEEEEETTCTTCCHHHHHHHHH------TCCSSEE
T ss_pred C---ceEEecCCC--------CCCcHHHHHHHHHHcC------CCCEEEEeCCcCcCCHHHHHHHHh------cCCEEEE
Confidence 1 122221111 2599999999988774 478999999994 3443 455 44 1111110
Q ss_pred EEEcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCC
Q 014953 163 CLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP 242 (415)
Q Consensus 163 ~~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~ 242 (415)
.+ +|+ ....+|+| |+++++..+.+....
T Consensus 128 ----------------~~-~g~----------------------------------~~p~~giy-~~~~~~~~l~~~~~~ 155 (201)
T 2e8b_A 128 ----------------VA-KTE----------------------------------KLHTLVGV-YSKKLLEKIEERIKK 155 (201)
T ss_dssp ----------------EE-ESS----------------------------------SEEEEEEE-EEGGGHHHHHHHHHT
T ss_pred ----------------ec-CCc----------------------------------eeeEEEEE-eChhHHHHHHHHHHc
Confidence 00 110 12357999 999877544321111
Q ss_pred CCCcccccchhhhcccceEEEEEeC--ceEE--ecCCHHHHHHHHHh
Q 014953 243 TANDFGSEIIPASANEQFLKAYLFN--DYWE--DIGTIRSFFEANLA 285 (415)
Q Consensus 243 ~~~~~~~~~l~~l~~~~~i~~~~~~--g~~~--di~t~~~y~~an~~ 285 (415)
.. ..+..+++..++..+.++ +.|. |||||+||.+++..
T Consensus 156 g~-----~~~~~~l~~~~~~~~~~~~~~~~~~~dintpedl~~~~~~ 197 (201)
T 2e8b_A 156 GD-----YRIWALLKDVGYNEVEIPEELRYTLLNMNTKEDLKRILAI 197 (201)
T ss_dssp TC-----CCHHHHHHHHCCEEEECCGGGGGGGCCSCCC---------
T ss_pred CC-----chHHHHHHHCCeEEeccccccchhhcCCCCHHHHHHHHHH
Confidence 11 122333333456666664 5789 99999999988754
|
| >1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=7e-16 Score=152.34 Aligned_cols=212 Identities=16% Similarity=0.168 Sum_probs=139.6
Q ss_pred cceEEEEEcCCCCCcccccccCCcccceee---CCcceeehhehhhhhc--------cC----CcEEEEEcccChhHHHH
Q 014953 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPI---GGAYRLIDVPMSNCIN--------SG----INKVYILTQYNSASLNR 71 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~llpv---~g~~pli~~~l~~l~~--------~g----i~~I~vv~~~~~~~i~~ 71 (415)
.+|.+||||||.||||+ .+.||+|+|| .|+ |+++++++++.+ .| +..+++...+..+.+.+
T Consensus 101 ~kvavViLAGG~GTRLg---~~~PK~l~pv~~~~gk-~~le~~~e~l~~lq~la~~~~G~~~~ip~vImtS~~t~e~t~~ 176 (505)
T 1jv1_A 101 NKVAVLLLAGGQGTRLG---VAYPKGMYDVGLPSRK-TLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKE 176 (505)
T ss_dssp TCEEEEEECCCCCCTTS---CSSCGGGCCCCCTTCC-CHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECTTTHHHHHH
T ss_pred CceEEEEEcCCccccCC---CCCCCccceeecCCCC-cHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCHHHHHH
Confidence 67999999999999996 6799999999 799 999999999876 36 77777777777899999
Q ss_pred HHHhhccCCCCcccCCceEEEecCcc-----C--CCC-----CCCccccchHHHHHHhhh--hhcCCCCCCcCeEEEEcC
Q 014953 72 HLARAYNYGSGVTFGDGCVEVLAATQ-----T--PGE-----AGKRWFQGTADAVRQFHW--LFEDPRNKVIEDVLILSG 137 (415)
Q Consensus 72 ~l~~~~~~~~~~~~~~~~v~i~~~~~-----~--~~~-----~~~~~~~Gt~~al~~~~~--~i~~~~~~~~~~~lv~~g 137 (415)
|+.+...|+-. ...+....... . ... .-...+.|+|+.+..+.. .++.....+.++|+|+++
T Consensus 177 ~f~~~~~fGl~----~~~I~~f~Q~~~P~i~~~g~~~l~~~~~~e~~P~GtGG~~~~L~~sg~L~~l~~~g~e~~~V~n~ 252 (505)
T 1jv1_A 177 FFTKHKYFGLK----KENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCV 252 (505)
T ss_dssp HHHHTGGGGSC----GGGEEEEECCEEECEETTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEET
T ss_pred HHHhhhhcCCC----cCceEEEEecceEEEcCCCcccccCCcccccCCCCchHHHHHHHHcCcHHHHHhcCCCEEEEEEC
Confidence 99764222211 00122111000 0 000 001235799999876542 111000012489999999
Q ss_pred Cee-cccChHHHHHHHHHcCCcEEEEEEEcCCCcCCcccEEEECCCCCe--EEEEEcCCccccccccccccccccccccc
Q 014953 138 DHL-YRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRV--LSFSEKPKGKDLKAMAVDTTVLGLSKQEA 214 (415)
Q Consensus 138 D~i-~~~~l~~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~v--~~~~ek~~~~~~~~~~~~~~~~~~~~~~~ 214 (415)
|++ +..+...++.+|..+++++++.+.+.... .+.+|++..+ +|++ +.+.|+|..... .. ++ ..
T Consensus 253 Dn~L~~~~d~~~lg~~~~~~~~~~~~v~~k~~~-~e~~Gvl~~~-dg~~~vvEy~E~p~~~~~---~~-------~~-~g 319 (505)
T 1jv1_A 253 DNILVKVADPRFIGFCIQKGADCGAKVVEKTNP-TEPVGVVCRV-DGVYQVVEYSEISLATAQ---KR-------SS-DG 319 (505)
T ss_dssp TBTTCCTTCHHHHHHHHHTTCSEEEEEEECCST-TCSCCEEEEE-TTEEEEECGGGSCHHHHH---CB-------CT-TS
T ss_pred CccccccchHHHHHHHHHcCCCEEEEEEEccCC-ccCcceEEEE-CCeEEEEEEeeCCHHHhh---hc-------cc-cc
Confidence 995 77777889999999999999988873321 5789998875 4554 444444432110 00 00 01
Q ss_pred ccccceeeeeEEEEeHHHHHHHHhh
Q 014953 215 EEKPYIASMGVYLFKKEILLNLLRW 239 (415)
Q Consensus 215 ~~~~~l~~~Giyi~~~~~l~~~l~~ 239 (415)
....+..++|+|+|+.++++.+.+.
T Consensus 320 ~~~~~~~N~~~~~f~l~~L~~i~~~ 344 (505)
T 1jv1_A 320 RLLFNAGNIANHFFTVPFLRDVVNV 344 (505)
T ss_dssp SBSSCEEEEEEEEEEHHHHHHHHHT
T ss_pred ccccceeeEEEEEecHHHHHHHHHh
Confidence 1234789999999999999877653
|
| >2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=4.2e-15 Score=145.94 Aligned_cols=346 Identities=14% Similarity=0.113 Sum_probs=195.7
Q ss_pred cceEEEEEcCCCCCcccccccCCcccceeeC-CcceeehhehhhhhccC------CcEEEEEcccChhHHHHHHH-hhcc
Q 014953 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIG-GAYRLIDVPMSNCINSG------INKVYILTQYNSASLNRHLA-RAYN 78 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~llpv~-g~~pli~~~l~~l~~~g------i~~I~vv~~~~~~~i~~~l~-~~~~ 78 (415)
.++.+||||||.||||+ .+.||+|+||+ |+ |+++++++++.+.| +.-+++...+..+.+.+|+. +...
T Consensus 74 ~k~avViLAGGlGTRLg---~~~PK~llpV~~gk-~fLe~~ie~l~~~~~~~g~~ip~viMtS~~t~e~t~~~f~~~~~~ 149 (505)
T 2oeg_A 74 QSTVVLKLNGGLGTGMG---LCDAKTLLEVKDGK-TFLDFTALQVQYLRQHCSEHLRFMLMDSFNTSASTKSFLKARYPW 149 (505)
T ss_dssp HTEEEEEEECCCCGGGT---CCSCGGGSEEETTE-EHHHHHHHHHHHHHHHTCTTCEEEEEECHHHHHHHHHHHHHHCHH
T ss_pred hcceEEEEcCCcccccC---CCCCCcccccCCCC-cHHHHHHHHHHHHHHhcCCCcCEEEEeCCCCHHHHHHHHhhhhhc
Confidence 37899999999999999 77999999999 99 99999999999875 33344445555788999997 4221
Q ss_pred CCC---Ccc-cCCceEEEecCcc-C-----CCCCCCccccchHHHHHHh-----hhh-hcCCCCCCcCeEEEEcCCeecc
Q 014953 79 YGS---GVT-FGDGCVEVLAATQ-T-----PGEAGKRWFQGTADAVRQF-----HWL-FEDPRNKVIEDVLILSGDHLYR 142 (415)
Q Consensus 79 ~~~---~~~-~~~~~v~i~~~~~-~-----~~~~~~~~~~Gt~~al~~~-----~~~-i~~~~~~~~~~~lv~~gD~i~~ 142 (415)
++- ... |....+..+.... . ..+.-...+.|+|+++... ++. ++. +.++++|.++|+++.
T Consensus 150 fGl~~~~I~~f~Q~~~P~~~~~~~~~i~~~~~~~~e~~P~G~Gg~~~aL~~sGlL~~l~~~----G~e~i~V~N~DNL~~ 225 (505)
T 2oeg_A 150 LYQVFDSEVELMQNQVPKILQDTLEPAAWAENPAYEWAPPGHGDIYTALYGSGKLQELVEQ----GYRYMFVSNGDNLGA 225 (505)
T ss_dssp HHTTCCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCTTHHHHHHHHTTHHHHHHHT----TCCEEEEECTTCTTC
T ss_pred cCCCccceEEEEEcCEEeEecCCCceeecCCCCccccCcCCchHHHHHHHhcChHHHHHhc----CCCEEEEEECCcccc
Confidence 221 001 1111111111100 0 0000012356999998754 222 321 257999999999874
Q ss_pred -cChHHHHHHHHHcCCcEEEEEEEcCCCcCCcccEEEEC------CCCC-------e--EEEEEcCCccccccccccccc
Q 014953 143 -MDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKIN------NEGR-------V--LSFSEKPKGKDLKAMAVDTTV 206 (415)
Q Consensus 143 -~~l~~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d------~~~~-------v--~~~~ek~~~~~~~~~~~~~~~ 206 (415)
.|+ .++.+|.++++++++.+.+...+ ...+|++..+ .+|+ + +++.+-|+.....
T Consensus 226 ~~D~-~llg~~~~~~ad~~~~v~~k~~~-d~~~Gvl~~~~~~~~~~dg~~nvEyn~~~llEyse~p~e~~~~-------- 295 (505)
T 2oeg_A 226 TIDK-RVLAYMEKEKIDFLMEVCRRTES-DKKGGHLARQTVYVKGKDGQPDAEKRVLLLRESAQCPKADMES-------- 295 (505)
T ss_dssp CCCH-HHHHHHHHHTCSEEEEEEECCTT-CCSSEEEEEEEEEECCSSSCCCEEEEEEEEEEGGGSCGGGHHH--------
T ss_pred ccCH-HHHHHHHhcCCcEEEEEEEecCC-ccceeEEEEecccccccCCccccccCceeEEEeccCChhhhhc--------
Confidence 467 89999999999999999887762 2568888773 4577 3 3333333321100
Q ss_pred ccccccccccccceeeeeEEEEeHHHHHHHHhhh-----CCC-----C--------------CcccccchhhhcccceEE
Q 014953 207 LGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR-----FPT-----A--------------NDFGSEIIPASANEQFLK 262 (415)
Q Consensus 207 ~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~-----~~~-----~--------------~~~~~~~l~~l~~~~~i~ 262 (415)
........+.++...+|+-+++..+++.. .+. . +.++.|+++.. + +..
T Consensus 296 -----~~g~~~f~~~Ninn~~~~l~~l~~~~~~~~~~~~Lp~~vn~K~i~~~d~~~~~~~qlE~~~~d~~~~~-~--~~~ 367 (505)
T 2oeg_A 296 -----FQDINKYSFFNTNNLWIRLPVLLETMQEHGGTLPLPVIRNEKTVDSSNSASPKVYQLETAMGAAIAMF-E--SAS 367 (505)
T ss_dssp -----HHCTTTTCEEEEEEEEEEHHHHHHHHHHTTSSCCCCCEEEEEESSSSCTTSCEEEEEECCGGGGGGSC-T--TCE
T ss_pred -----ccCccccCeeEEEEEEEEHHHHHHHHhhhcCccCCcceecccccCCCCCCCCCeEEEeEHHHHHHHhc-C--cce
Confidence 01112235578999999999998887651 110 0 01112222211 1 234
Q ss_pred EEEeCc-eEEecCCHHHHHHHHHhhcCCCCCCCccCCCCCccccCccCCCeee-c--CCccc--cceECCC-CEEcceEE
Q 014953 263 AYLFND-YWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKI-D--DSKIV--DSIISHG-SFITSSFI 335 (415)
Q Consensus 263 ~~~~~g-~~~di~t~~~y~~an~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~i-~--~~~i~--~~~ig~~-~~I~~~~i 335 (415)
++.++- .|..+.+..++..+..++......-.+...... ....|.+.+ + ...+. ...+..| ..|.+ .
T Consensus 368 ~~~V~R~~FsPvKn~~dl~~~~sdly~~~~~~~~~~~~~~----~~~~p~i~l~p~~~~~~~~~~~r~~~g~psi~~--~ 441 (505)
T 2oeg_A 368 AIVVPRSRFAPVKTCADLLALRSDAYVVTDDFRLVLDDRC----HGHPPVVDLDSAHYKMMNGFEKLVQHGVPSLVE--C 441 (505)
T ss_dssp EEECCGGGCCCCSSHHHHHHHHSTTEEECTTCCEEECGGG----TTCCCEEEECHHHHSSHHHHHHHSTTCCCBCTT--E
T ss_pred EEEeccceeecccCCCCHHHHHHHHHhhcCCceEEEcccc----cCcCCeEEEChhHcCcHHHHHHhcCCCCCcccc--C
Confidence 444432 478888999999888877654321112111000 011222222 1 11221 1223332 12321 1
Q ss_pred eeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEeeeEECCCe
Q 014953 336 EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKYEQLKPIC 397 (415)
Q Consensus 336 ~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~~i~~~~ 397 (415)
..=+|--.++.|.++.+.++++..... -++ +..|-+|++++|..+...-
T Consensus 442 ~~L~v~G~~~f~~~v~l~G~v~i~a~~----------~~~---~~~ip~g~~l~n~~~~~~~ 490 (505)
T 2oeg_A 442 KRVTVKGLVQFGAGNVLTGTVTIENTD----------SAS---AFVIPDGAKLNDTTASPQQ 490 (505)
T ss_dssp EEEEEESSEECCTTCEEEEEEEEECCS----------CSS---CEECCTTCEEESCEECC--
T ss_pred cEEEEEcceEEccCcEEEEEEEEEecC----------CCC---cEEeCCCCEEeCceechhh
Confidence 122444456678888888876655410 011 2678888888887776543
|
| >3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.1e-16 Score=137.54 Aligned_cols=115 Identities=17% Similarity=0.251 Sum_probs=84.6
Q ss_pred ceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCC
Q 014953 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGD 87 (415)
Q Consensus 8 ~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~ 87 (415)
+|.|||||||.|+||+ .||+|+|++|+ |||+|+++.+... +++|++++..+.+.+++. .+
T Consensus 2 ~~~~iIlAgG~g~Rmg-----~~K~l~~i~g~-pll~~~l~~l~~~---~ivvv~~~~~~~~~~~~~----------~~- 61 (197)
T 3d5n_A 2 NIGVIILAAGEGKRFG-----GDKLLAKIDNT-PIIMRTIRIYGDL---EKIIIVGKYVNEMLPLLM----------DQ- 61 (197)
T ss_dssp CEEEEEECSCCTTCCC-----SSGGGSBSSSS-BHHHHHHHHTTTS---BCCEEECTTHHHHGGGCT----------TS-
T ss_pred ceEEEEECCcCcccCC-----CCeeeCEeCce-EHHHHHHHHHHhC---CEEEEECCCHHHHHHHhc----------CC-
Confidence 4789999999999997 49999999999 9999999999877 888999887544433221 11
Q ss_pred ceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHHHHHcCCcE
Q 014953 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADI 159 (415)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~h~~~~~~~ 159 (415)
+ ++.... +..|++++++.++..+.+ .+.+++++||. +.+.+ +..+++.+ +.++++
T Consensus 62 --~-~v~~~~--------~~~G~~~si~~al~~~~~-----~~~vlv~~~D~P~i~~~~i~~l~~~~-~~~~~~ 118 (197)
T 3d5n_A 62 --I-VIYNPF--------WNEGISTSLKLGLRFFKD-----YDAVLVALGDMPFVTKEDVNKIINTF-KPNCKA 118 (197)
T ss_dssp --C-EEECTT--------GGGCHHHHHHHHHHHTTT-----SSEEEEEETTCCCSCHHHHHHHHHTC-CTTCSE
T ss_pred --E-EEECCC--------CCCCHHHHHHHHHHhhcc-----CCcEEEEeCCccccCHHHHHHHHHHh-cCCCcE
Confidence 2 221111 125999999999988753 37899999999 55544 77887766 444443
|
| >1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.7e-15 Score=133.26 Aligned_cols=111 Identities=15% Similarity=0.164 Sum_probs=83.8
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCccc
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (415)
|+++.|||||||.|+||+ ..||+|+|++|+ |||+|+++.+.. ++++|+|++++..+.+. . +
T Consensus 4 mm~~~~iILAgG~s~Rmg----~~~K~ll~i~G~-pli~~~l~~l~~-~~~~ivvv~~~~~~~~~----~---------~ 64 (201)
T 1e5k_A 4 MTTITGVVLAGGKARRMG----GVDKGLLELNGK-PLWQHVADALMT-QLSHVVVNANRHQEIYQ----A---------S 64 (201)
T ss_dssp CCSEEEEEECCCCCSSSC----SSCGGGSEETTE-EHHHHHHHHHHH-HCSCEEEECSSSHHHHH----T---------T
T ss_pred CCcceEEEEcCCCCCcCC----CCCCceeeECce-eHHHHHHHHHHh-hCCEEEEEcCCcHHHHh----h---------c
Confidence 467999999999999996 379999999999 999999999984 68999999988754321 1 1
Q ss_pred CCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHH
Q 014953 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQN 151 (415)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~ 151 (415)
+ +.++..... ...|++++++.++..+. .+.+++++||+ +...+ +..+++.
T Consensus 65 ~---~~~v~~~~~-------~~~G~~~si~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~ 116 (201)
T 1e5k_A 65 G---LKVIEDSLA-------DYPGPLAGMLSVMQQEA------GEWFLFCPCDTPYIPPDLAARLNHQ 116 (201)
T ss_dssp S---CCEECCCTT-------CCCSHHHHHHHHHHHCC------SSEEEEEETTCTTCCTTHHHHHHHT
T ss_pred C---CeEEecCCC-------CCCCHHHHHHHHHHhCC------CCcEEEEeCCcCcCCHHHHHHHHhh
Confidence 1 122221111 01489999999988774 47899999999 55555 6777765
|
| >3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2e-15 Score=136.62 Aligned_cols=137 Identities=15% Similarity=0.216 Sum_probs=86.2
Q ss_pred cccceEEEEEeCce----EEecCCHHHHHHHHHhhcCCC-----------CCCCccCCCCCccccCccCCCeee------
Q 014953 256 ANEQFLKAYLFNDY----WEDIGTIRSFFEANLALTAHP-----------PMFSFYDATKPIYTSRRNLPPSKI------ 314 (415)
Q Consensus 256 ~~~~~i~~~~~~g~----~~di~t~~~y~~an~~~l~~~-----------~~~~~~~~~~~~~~~~~i~~~~~i------ 314 (415)
.+..++++|...+| |.|+++ |+.+|+.++... +...+..+.+.+.+++.+.+++.|
T Consensus 36 ~~~~~~~~~~~~~~~~g~w~di~~---~l~~n~~~l~~~~~~~~~~~~~~~~~~~~~~~~~I~~~a~I~~~v~Ig~~~~I 112 (240)
T 3r8y_A 36 PETVQAFVNKKSGVLFGEWSEIKT---ILDENSKYIVDYVVENDRRNSAIPMLDLKGIKARIEPGAIIRDHVEIGDNAVI 112 (240)
T ss_dssp CTTSEEEECSSEEEEEEEHHHHHH---HHHHTTTTEEEEEEEECCBSBCSCBCCCTTCSSEECTTCEEBSSCEECTTCEE
T ss_pred CCcceEEEcCCCeEEEccHHHHHH---HHHhccceechhhhhhhhhhhccchhhccCCCCEECCCCEECCCcEECCCCEE
Confidence 44567777776666 777776 888888776322 111112223333333333333333
Q ss_pred -cCCcc-ccceECCCCEEc-ceEEe-eeEEccCcEECCCcEEee---------cEEeCCccccchhHHHhhhhCCCcceE
Q 014953 315 -DDSKI-VDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKD---------TMMLGADFYETDAEVASLLAEGRVPVG 381 (415)
Q Consensus 315 -~~~~i-~~~~ig~~~~I~-~~~i~-~svig~~~~ig~~~~i~~---------sii~~~~~~~~~~~~~~~~~~~~~~~~ 381 (415)
.++.| .++.||++|+|+ ++.|. +|+||++|+|++++.|.+ ++|+++ |.
T Consensus 113 ~~~s~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~~~~~Ig~~-------------------~~ 173 (240)
T 3r8y_A 113 MMNATINIGAVIGEGSMIDMNAVLGGRATVGKNCHVGAGAVLAGVIEPPSAKPVIVEDD-------------------VV 173 (240)
T ss_dssp CTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECCCCSCTTSCCCEECTT-------------------CE
T ss_pred CCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCCccCCCCCCcEECCC-------------------CE
Confidence 33333 355566666665 45553 566666666666666655 555555 89
Q ss_pred eCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 382 IGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 382 Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
||.+|.|. +++||+++.|++++.+.+.+..++.
T Consensus 174 IG~~~~I~~~~~Ig~~~~I~~gsvV~~~vp~~~v 207 (240)
T 3r8y_A 174 IGANVVVLEGVTVGKGAVVAAGAVVTEDVPPYTV 207 (240)
T ss_dssp ECTTCEECTTCEECTTCEECTTCEECSCBCTTEE
T ss_pred ECCCCEECCCcEECCCCEECCCCEECCCcCCCcE
Confidence 99999994 9999999999999988887777654
|
| >3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.54 E-value=7.2e-14 Score=123.18 Aligned_cols=115 Identities=17% Similarity=0.255 Sum_probs=83.4
Q ss_pred eEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCc
Q 014953 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (415)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (415)
|.|||||||.|+||+ .||+|+|++|+ |||+|+++.+... +|+|++++ .+.+. .+.+.+ +
T Consensus 1 m~aiILAgG~s~Rmg-----~~K~ll~~~G~-pli~~~~~~l~~~---~vvvv~~~-~~~~~-~~~~~~--------~-- 59 (208)
T 3ngw_A 1 MKVAVLVGGVGRRIG-----MEKTEVMLCGK-KLIEWVLEKYSPF---QTVFVCRD-EKQAE-KLSSRY--------E-- 59 (208)
T ss_dssp CEEEEECCCCCTTTT-----SCGGGCEETTE-EHHHHHHHHHTTS---EEEEECSS-HHHHH-HHHTTS--------C--
T ss_pred CEEEEECCCchhhCC-----CCCcccEECCe-eHHHHHHHHhcCC---CEEEEECC-HHHHH-HHHHhc--------C--
Confidence 689999999999996 79999999999 9999999999876 89999874 23332 332211 1
Q ss_pred eEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHHHHHcCCcEEE
Q 014953 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITI 161 (415)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~h~~~~~~~ti 161 (415)
+.++..... -.|...+++.++..+ . +.+ +++||+ +.+.+ +..+++.+.+.++++++
T Consensus 60 -~~~v~d~~~--------~~G~~~si~~gl~~~-~------~~v-v~~~D~P~i~~~~i~~l~~~~~~~~~~~v~ 117 (208)
T 3ngw_A 60 -AEFIWDLHK--------GVGSIAGIHAALRHF-G------SCV-VAAIDMPFVKPEVLEHLYKEGEKAGCDALI 117 (208)
T ss_dssp -SCEECCTTC--------CCSHHHHHHHHHHHH-S------SEE-EEETTCTTCCHHHHHHHHHHHHHHTCSEEE
T ss_pred -CeEEecCCC--------CCChHHHHHHHHHHc-C------CCE-EEECCccCCCHHHHHHHHHHhhcCCCCEEE
Confidence 122322111 148889999998877 3 678 999999 55555 78888877665665544
|
| >1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=7.6e-15 Score=140.11 Aligned_cols=196 Identities=14% Similarity=0.129 Sum_probs=124.9
Q ss_pred cceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhc-cCCcEEEEEcccChhHHHHHHHhhccCCCCccc
Q 014953 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCIN-SGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~-~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (415)
+++.|||||||.|+||. ...||+|+|++|+ |||+|+++.+.+ .++++|+|+++ ..+.+.+++ . +
T Consensus 2 mki~aIILAaG~ssRmg---~~~pK~ll~l~Gk-PLi~~~l~~l~~~~~~~~IvVvt~-~~~~i~~~~------~-~--- 66 (371)
T 1w55_A 2 SEMSLIMLAAGNSTRFN---TKVKKQFLRLGND-PLWLYATKNLSSFYPFKKIVVTSS-NITYMKKFT------K-N--- 66 (371)
T ss_dssp CCEEEEEECCSCCTTTC---SSSCGGGCEEBTE-EHHHHHHHHHHTTSCCSCEEEEES-CHHHHHTTC------S-S---
T ss_pred CccEEEEECCCCCccCC---CCCCcceEEECCe-EHHHHHHHHHHccCCCCeEEEEcC-CHHHHHHHh------C-C---
Confidence 56899999999999997 4579999999999 999999999998 68999999998 433333221 1 0
Q ss_pred CCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-eccc-ChHHHHHHHHHcCCcEEEEE
Q 014953 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRM-DYMDFVQNHRQSGADITISC 163 (415)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~-~l~~~l~~h~~~~~~~ti~~ 163 (415)
+.++. .. .|+.++++.++..+. .+.+++++||. +.+. .+..+++.+.+.+ .++.+
T Consensus 67 ----v~~v~--~g---------~g~~~sv~~aL~~l~------~d~vlv~~~D~Pli~~~~i~~li~~~~~~~--a~i~~ 123 (371)
T 1w55_A 67 ----YEFIE--GG---------DTRAESLKKALELID------SEFVMVSDVARVLVSKNLFDRLIENLDKAD--CITPA 123 (371)
T ss_dssp ----SEEEE--CC---------SSHHHHHHHHHTTCC------SSEEEEEETTCTTCCHHHHHHHHTTGGGCS--EEEEE
T ss_pred ----CEEEe--CC---------CChHHHHHHHHHhcC------CCeEEEEeCCcccCCHHHHHHHHHHHHhcC--CEEEE
Confidence 22321 11 378899999887764 47899999999 4444 4788888776553 34444
Q ss_pred EEcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeee-eEEEEeHHHHHHHHhhhCC
Q 014953 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASM-GVYLFKKEILLNLLRWRFP 242 (415)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Giyi~~~~~l~~~l~~~~~ 242 (415)
.+..+. ..+ + .+.+... .+... .-+.|+.+.+..+++...
T Consensus 124 ~~~~d~--vk~----------v---~~t~~r~-----------------------~l~~~~~P~~f~~~~l~~~~~~~~- 164 (371)
T 1w55_A 124 LKVADT--TLF----------D---NEALQRE-----------------------KIKLIQTPQISKTKLLKKALDQNL- 164 (371)
T ss_dssp ECCCSC--EEE----------T---TEEECGG-----------------------GCCEECSCEEEEHHHHHHHTSSCC-
T ss_pred EEeecC--eee----------e---eeecCcc-----------------------ceeecCCcceecHHHHHHHHHhcc-
Confidence 443321 000 0 0001100 01111 124678777765543211
Q ss_pred CCCcccccchhhhc-ccceEEEEEeCceEEecCCHHHHHHHH
Q 014953 243 TANDFGSEIIPASA-NEQFLKAYLFNDYWEDIGTIRSFFEAN 283 (415)
Q Consensus 243 ~~~~~~~~~l~~l~-~~~~i~~~~~~g~~~di~t~~~y~~an 283 (415)
. ..+....+. .+.++..++.++.|.||+||+||..|+
T Consensus 165 ---~-~td~~~ll~~~g~~V~~v~~~~~~~dIdTpeDL~~Ae 202 (371)
T 1w55_A 165 ---E-FTDDSTAIAAMGGKIWFVEGEENARKLTFKEDLKKLD 202 (371)
T ss_dssp ---C-CSSHHHHHHTTTCCEEEEECCGGGCCCCSGGGGGGSC
T ss_pred ---c-ccCHHHHHHhCCCcEEEEECCccccCCCCHHHHHHHH
Confidence 0 111111111 245788888778899999999999886
|
| >2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-13 Score=134.99 Aligned_cols=213 Identities=17% Similarity=0.195 Sum_probs=139.0
Q ss_pred cceEEEEEcCCCCCcccccccCCcccceeeC---Ccceeehhehhhhhcc--------C------CcEEEEEcccChhHH
Q 014953 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIG---GAYRLIDVPMSNCINS--------G------INKVYILTQYNSASL 69 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~llpv~---g~~pli~~~l~~l~~~--------g------i~~I~vv~~~~~~~i 69 (415)
.++.+|+||||.||||. .+.||+|+||+ |+ |+++++++++.+. | +..+++...+..+.+
T Consensus 102 gkvavvlLaGG~GTRLg---~~~PK~l~~v~l~~gk-~~l~~~~e~l~~~~~~~~~~~G~~~~~~ip~~ImtS~~t~~~t 177 (486)
T 2yqc_A 102 GEVAVLLMAGGQGTRLG---SSAPKGCFNIELPSQK-SLFQIQAEKILKIEQLAQQYLKSTKKPIINWYIMTSGPTRNAT 177 (486)
T ss_dssp TCEEEEEEEESBCGGGT---CSSBGGGCBCCCTTCC-BHHHHHHHHHHHHHHHHHHHHTCSSCCCCEEEEEECGGGHHHH
T ss_pred CCeEEEEEcCCccccCC---CCCCCccceecCCCCC-cHHHHHHHHHHHHHHHhhhhcCCCcCCccCEEEEECCCCHHHH
Confidence 47999999999999995 78999999999 99 9999999999986 6 888888888989999
Q ss_pred HHHHHhhccCCCCcccCCceEEEecCccCCC--CCC-----------CccccchHHHHHHhhh--hhcCCCCCCcCeEEE
Q 014953 70 NRHLARAYNYGSGVTFGDGCVEVLAATQTPG--EAG-----------KRWFQGTADAVRQFHW--LFEDPRNKVIEDVLI 134 (415)
Q Consensus 70 ~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~--~~~-----------~~~~~Gt~~al~~~~~--~i~~~~~~~~~~~lv 134 (415)
.+|+.+...|+-.. ..+.+.....-+. ..| ...+.|+|+.+..... .+++....+.+.+.+
T Consensus 178 ~~~~~~~~~fgl~~----~~v~~f~Q~~~P~i~~dg~~i~l~~~~~i~~~P~G~Ggi~~aL~~sG~Ld~l~~~G~~yi~v 253 (486)
T 2yqc_A 178 ESFFIENNYFGLNS----HQVIFFNQGTLPCFNLQGNKILLELKNSICQSPDGNGGLYKALKDNGILDDLNSKGIKHIHM 253 (486)
T ss_dssp HHHHHHTGGGGSCG----GGEEEEECCEEECBCTTSSSBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEE
T ss_pred HHHHhhccccCCCc----ceEEEEecccceeEcCCCCccccCCCCccccCcCCchHHHHHHHHcCcHHHHHhcCCeEEEE
Confidence 99997643232111 1122111000000 001 1135799988765431 111111122578889
Q ss_pred EcCCeecc--cChHHHHHHHHHcCCcEEEEEEEcCCCcCCcccEEEECC-CC--CeEEEEEcCCcccccccccccccccc
Q 014953 135 LSGDHLYR--MDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINN-EG--RVLSFSEKPKGKDLKAMAVDTTVLGL 209 (415)
Q Consensus 135 ~~gD~i~~--~~l~~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d~-~~--~v~~~~ek~~~~~~~~~~~~~~~~~~ 209 (415)
.+.|.+.. .| ..++.+|..+++++++.+.+...+ ....|++.... +| +|+.+.|+|...... .
T Consensus 254 ~~vDN~l~~~~D-p~~lg~~~~~~~~~~~~vv~k~~~-~e~~Gvl~~~~~dg~~~vvEy~E~~~~~~~~---~------- 321 (486)
T 2yqc_A 254 YCVDNCLVKVAD-PIFIGFAIAKKFDLATKVVRKRDA-NESVGLIVLDQDNQKPCVIEYSEISQELANK---K------- 321 (486)
T ss_dssp EETTBTTCCTTC-HHHHHHHHHHTCSEEEEEEECCST-TCCCCEEEEETTTTEEEEECGGGSCHHHHHC---E-------
T ss_pred ECCCCceeeccC-HHHHHHHHHcCCCEEEEEEEcCCC-CCceeEEEEEecCCCEEEEEEecCCHHHhhc---c-------
Confidence 99998544 34 468899999999999988876442 36678877532 45 477777776532100 0
Q ss_pred ccc-ccccccceeeeeEEEEeHHHHHHHHhh
Q 014953 210 SKQ-EAEEKPYIASMGVYLFKKEILLNLLRW 239 (415)
Q Consensus 210 ~~~-~~~~~~~l~~~Giyi~~~~~l~~~l~~ 239 (415)
+++ ......+..++++|+|+.+++...++.
T Consensus 322 ~~~~~~~~~~~~~Ni~~~~~~l~~L~~~l~~ 352 (486)
T 2yqc_A 322 DPQDSSKLFLRAANIVNHYYSVEFLNKMIPK 352 (486)
T ss_dssp ETTEEEEESSCEEEEEEEEEEHHHHHHHHHH
T ss_pred cccccccccccceeEEEEEEeHHHHHHHHHh
Confidence 000 011134678999999999999875544
|
| >3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
Probab=99.46 E-value=3e-14 Score=140.11 Aligned_cols=238 Identities=11% Similarity=0.017 Sum_probs=129.7
Q ss_pred ccchHHHHHHhhhhhcCCCCCCcCeEEEEc----CCeecccChHHHHHHHHHc--C---------CcEEEEEEEcCCCcC
Q 014953 107 FQGTADAVRQFHWLFEDPRNKVIEDVLILS----GDHLYRMDYMDFVQNHRQS--G---------ADITISCLPMDDSRA 171 (415)
Q Consensus 107 ~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~----gD~i~~~~l~~~l~~h~~~--~---------~~~ti~~~~~~~~~~ 171 (415)
+++++++++.+...+ .+++|+. +|.....+|.+++..|+++ + +..|+.+....+.-.
T Consensus 123 pL~~a~~i~~~d~~~--------~~t~V~~~~~kpd~~~~~~l~~l~~~h~~~~~g~~~~~~~ig~~~ti~L~~l~d~li 194 (496)
T 3c8v_A 123 PLHDDEVITIKDSFL--------NKTLVHSNSHDPESPEEFTIRNTVAMPYANIHGSLTEGSFIGSFATVDLSTIHNSVV 194 (496)
T ss_dssp ECSSCCEEEEESCEE--------ESCEEESCCCCTTCTTEEEEESCEECTTCEEESCCEESCEECTTCEEESCEEESCEE
T ss_pred chhHhhhHHhhhhcC--------CceEEeccccCCCCccccchHHHHHHHHHhhcCCcccceEecccceeeHHHHHHHHH
Confidence 367777754442211 1237777 5877777776777777753 2 233444444444212
Q ss_pred CcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCCcccccc
Q 014953 172 SDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEI 251 (415)
Q Consensus 172 ~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~ 251 (415)
..++.+. .+++....++|...- ..++.....+|.|+++++...+...
T Consensus 195 ~~~~~~~---~g~i~~~~~~pg~~~-------------------i~~~~~lnf~Y~f~~~~L~~~l~~~----------- 241 (496)
T 3c8v_A 195 RYFSYVQ---TGELVGKCVEPGQIW-------------------IKSGDELEFHYSFDKAILDKYISQE----------- 241 (496)
T ss_dssp CTTCEEE---SSEEESCEECTTEEE-------------------EECTTSEEEEEECCHHHHTTTCBCC-----------
T ss_pred HHHhhhc---CCceEEeeecCCcee-------------------cccccccceEEEcCHHHHHHHHhhc-----------
Confidence 4555552 366766666665211 0122344569999998876432111
Q ss_pred hhhhcccceEEEEEeCceEEec--CCHHHHHHHHHhhcC----CCCCCCccCCCCCccccCccCCCeee-cCCccccceE
Q 014953 252 IPASANEQFLKAYLFNDYWEDI--GTIRSFFEANLALTA----HPPMFSFYDATKPIYTSRRNLPPSKI-DDSKIVDSII 324 (415)
Q Consensus 252 l~~l~~~~~i~~~~~~g~~~di--~t~~~y~~an~~~l~----~~~~~~~~~~~~~~~~~~~i~~~~~i-~~~~i~~~~i 324 (415)
.+.. ..+.|.|+ ..++++.++...... ....-.++++.+.+...+.|++++.| +++.|.++.|
T Consensus 242 -----~~~n-----~~g~~~Dll~~~~~d~~~i~~~~~~~~~~~I~~~a~I~p~a~i~g~v~IG~~~~I~~~a~I~~v~I 311 (496)
T 3c8v_A 242 -----AGSC-----PTGVLMEFVEVRQEDFEEVFASGHMASGAGSASGASVSGYAVIKGDTVIGENVLVSQRAYLDNAWM 311 (496)
T ss_dssp -----TTSC-----CBSHHHHHHHTTTHHHHHHHHC--------CCTTCEECTTSEEESSCEECTTCEECTTCEEEEEEE
T ss_pred -----cCcc-----ccceeeehhccchHHHHHHhhccccccCcccCCCcEECCCcEEeCCeEECCCCEECCCcEEeceEe
Confidence 0000 12223333 234555444221111 00111244444444455566666666 5666667777
Q ss_pred CCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEe-e----eEECCCeE
Q 014953 325 SHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-Y----EQLKPICH 398 (415)
Q Consensus 325 g~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~----~~i~~~~~ 398 (415)
|++|.|+ ++.|.+|+||++|.||+++.|.+++|+++ |.||.+|.|. + ++||+++.
T Consensus 312 G~~~~I~~~~~I~~~vIG~~~~Ig~~a~I~gv~IGd~-------------------v~IG~~a~I~~~~~~~v~IG~~a~ 372 (496)
T 3c8v_A 312 GKGSNAQENCYIINSRLERNCVTAHGGKIINAHLGDM-------------------IFTGFNSFLQGSESSPLKIGDGCV 372 (496)
T ss_dssp CTTCEECTTCEEEEEEEEESCEECTTCEEESEEEEET-------------------CEECTTCEEECCSSSCEEECTTCE
T ss_pred cCCCEECCCceEeceEeCCCCEECCCcEEcCceECCC-------------------cEECCCCEEeCCCCcceEECCCCE
Confidence 7777777 57777777777777777777777777777 6666666666 4 46666666
Q ss_pred EcCCcccC----cccccccc
Q 014953 399 IVETKYDS----STISRFSL 414 (415)
Q Consensus 399 i~~~~~~~----~~~~~~~~ 414 (415)
|++++.+. ..|-++|+
T Consensus 373 IGagsvV~~~~~~~I~~~s~ 392 (496)
T 3c8v_A 373 VMPHTIIDLEEPLEIPAGHL 392 (496)
T ss_dssp ECTTCEEECSSCEEECSSEE
T ss_pred ECCCCEEecCCCcEeCCCCE
Confidence 66666555 45554443
|
| >3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.46 E-value=6.6e-13 Score=126.37 Aligned_cols=210 Identities=11% Similarity=0.088 Sum_probs=140.8
Q ss_pred cceEEEEEcCCCCCcccccccCCcccceee---CCcceeehhehhhhhc-------------cCCcEEEEEcccChhHHH
Q 014953 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPI---GGAYRLIDVPMSNCIN-------------SGINKVYILTQYNSASLN 70 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~llpv---~g~~pli~~~l~~l~~-------------~gi~~I~vv~~~~~~~i~ 70 (415)
.++.+|+||||.||||+ .+.||+|+|| .|+ |+++++++++.+ .++.-+++...+.++.+.
T Consensus 34 gkvavvlLAGG~GTRLG---~~~PK~~~~Vgl~~gk-s~lq~~~e~i~~lq~l~~~~~~~~~~~Ip~~IMtS~~t~e~t~ 109 (405)
T 3oc9_A 34 GKTALITPAGGQGSRLG---FEHPKGMFVLPFEIPK-SIFQMTSERLLRLQELASEYSHQKNVMIHWFLMTNEETIEEIN 109 (405)
T ss_dssp TCEEEEEECCSBCTTTT---CCSBGGGCEECSSSCE-EHHHHHHHHHHHHHHHHHHHHCCSCCCCEEEEEECTTTHHHHH
T ss_pred CceEEEEecCCCccccc---CCCCCccccccCCCCC-cHHHHHHHHHHHHHHHHhhhccccCCCCCEEEEeCCccHHHHH
Confidence 57899999999999996 6899999999 899 999999988863 578777777888889999
Q ss_pred HHHHhhccCCCCcccCCceEEEec-----CccCC-------CCCCCccccchHHHHHHhhh--hhcCCCCCCcCeEEEEc
Q 014953 71 RHLARAYNYGSGVTFGDGCVEVLA-----ATQTP-------GEAGKRWFQGTADAVRQFHW--LFEDPRNKVIEDVLILS 136 (415)
Q Consensus 71 ~~l~~~~~~~~~~~~~~~~v~i~~-----~~~~~-------~~~~~~~~~Gt~~al~~~~~--~i~~~~~~~~~~~lv~~ 136 (415)
+|+.+...|+-.. ..+.... ..... ...-...+.|+|+....... .+++....+.+.+++.+
T Consensus 110 ~~f~~~~~fGl~~----~~i~~f~Q~~~P~i~~dg~i~l~~~~~i~~~P~GhGgi~~aL~~sG~Ld~l~~~Gieyi~v~n 185 (405)
T 3oc9_A 110 NYFKEHQYFGLSS----EQIHCFPQGMLPVVDFNGKILYEKKDKPYMAPNGHGGLFKALKDNGILEFMNEKGIKYSVAHN 185 (405)
T ss_dssp HHHHHTGGGGSCT----TSEEEEECCEEECBCTTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEEC
T ss_pred HHHHhCcccCCCc----cceEEEeeCceeEEecCCCeecCCCCccccccCCChHHHHHHHHCCcHHHHHhcCCEEEEEEe
Confidence 9998643232110 1121111 00000 00001234688887765431 12111111247899999
Q ss_pred CCe-ecccChHHHHHHHHHcCCcEEEEEEEcCCCcCCcccEEEE-CCCCCeEEEEEcCCccccccccccccccccccccc
Q 014953 137 GDH-LYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKI-NNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEA 214 (415)
Q Consensus 137 gD~-i~~~~l~~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~-d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~ 214 (415)
.|. +.......++.+|.++++++++-+.+...+ .+..|++.. |...+|+.+.|.|.. .... ....
T Consensus 186 vDN~L~~~~Dp~~lg~~~~~~~d~~~kvv~k~~~-dek~Gvl~~~dg~~~vvEysei~~e-~e~~-----------~~~g 252 (405)
T 3oc9_A 186 VDNILCKDVDPNMIGYMDLLQSEICIKIVKKGFK-EEKVGVLVKEQERIKVVEYTELTDE-LNKQ-----------LSNG 252 (405)
T ss_dssp TTBTTCCSSCHHHHHHHHHTTCSEEEEEEECCST-TCSCCEEEEETTEEEEECGGGCCTT-TTCB-----------CTTS
T ss_pred CCCcccccCCHHHHHHHHHcCCCEEEEEEECCCC-CCccceEEEECCeeEEEEEeeCCHH-Hhhc-----------CCCC
Confidence 999 888888899999999999999999887652 267888875 433467777776664 2100 0011
Q ss_pred ccccceeeeeEEEEeHHHHHHHH
Q 014953 215 EEKPYIASMGVYLFKKEILLNLL 237 (415)
Q Consensus 215 ~~~~~l~~~Giyi~~~~~l~~~l 237 (415)
....+..++++++|+.++|+++.
T Consensus 253 ~l~fn~~Ni~~h~fs~~fL~~i~ 275 (405)
T 3oc9_A 253 EFIYNCGHISINGYSTSFLEKAA 275 (405)
T ss_dssp CBSSCEEEEEEEEEEHHHHHHHT
T ss_pred ceeeccceeEeeecCHHHHHHhh
Confidence 12346778999999999998776
|
| >3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A | Back alignment and structure |
|---|
Probab=99.28 E-value=2.7e-11 Score=105.55 Aligned_cols=127 Identities=14% Similarity=0.063 Sum_probs=95.3
Q ss_pred eEEecCCHHHHHHHHHhhcCCC-CCCCccCCCCCccccCccC--CCeee-cCCccc-cceECCCCEEc-ceEEe-eeEEc
Q 014953 269 YWEDIGTIRSFFEANLALTAHP-PMFSFYDATKPIYTSRRNL--PPSKI-DDSKIV-DSIISHGSFIT-SSFIE-HSVVG 341 (415)
Q Consensus 269 ~~~di~t~~~y~~an~~~l~~~-~~~~~~~~~~~~~~~~~i~--~~~~i-~~~~i~-~~~ig~~~~I~-~~~i~-~svig 341 (415)
+..-++++....+..+.+.+.. ....+++|.+.+.+++.++ +++.+ +++.|. ++.||++|+|+ ++.|. ++.||
T Consensus 50 ~~iaig~~~~r~~~~~~l~~~~~~~~~~i~~~a~i~~~~~Ig~~~g~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~Ig 129 (194)
T 3bfp_A 50 FFIAIGNNEIRKKIYQKISENGFKIVNLIHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIG 129 (194)
T ss_dssp EEECCCCHHHHHHHHHHHHTTTCCBCCEECTTCEECTTCEECTTSCCEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCccccccCCeEEECCCceeCCCCCcEEcCCCEECCCCEECCCCEECCCCEEcCCCEEC
Confidence 4567888877666666555432 2234667777777777888 88888 667664 68888888887 67775 78888
Q ss_pred cCcEECCCcEEee-cEEeCCccccchhHHHhhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 342 IRSRINANVHLKD-TMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 342 ~~~~ig~~~~i~~-sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
++|+|++++.|.+ +.|+++ |.||.++.|. ++.|++++.|++++.+.+.+..++.
T Consensus 130 ~~~~I~~~~~i~~~~~Ig~~-------------------~~Ig~~~~i~~~~~Ig~~~~Igagsvv~~~v~~~~~ 185 (194)
T 3bfp_A 130 EFSHVSVGAKCAGNVKIGKN-------------------CFLGINSCVLPNLSLADDSILGGGATLVKNQDEKGV 185 (194)
T ss_dssp TTCEECTTCEECTTCEECTT-------------------CEECTTCEECTTCEECTTCEECTTCEECSCBCSCCE
T ss_pred CCCEECCCCEECCCcEECCC-------------------CEEcCCCEECCCCEECCCCEECCCCEEccccCCCCE
Confidence 8888888888877 777777 8888888887 8889999999999887777766553
|
| >3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1e-11 Score=108.11 Aligned_cols=117 Identities=17% Similarity=0.240 Sum_probs=82.0
Q ss_pred ccCCCCCccccCccCCCeee-cCCccc-cceECCCCEEc-ceEEe-eeEEccCcEECCCcEEee-cEEeCCccccchhHH
Q 014953 295 FYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKD-TMMLGADFYETDAEV 369 (415)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i~-~svig~~~~ig~~~~i~~-sii~~~~~~~~~~~~ 369 (415)
+++|.+.+.+.+.+++++.| +++.|. ++.||++|.|+ ++.|. ++.||++|.|++++.|.+ +.|++++.++.++.+
T Consensus 5 ~I~p~a~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~Ig~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~ig~~~~~ 84 (192)
T 3mqg_A 5 TIHPTAIVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQNNVSVYDNVFLEDDVFCGPSMVF 84 (192)
T ss_dssp EECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSSCEECTTCEECTTEEECTTCEECTTCBC
T ss_pred EECCCcEECCCCEECCCCEECCCCEECCCcEECCCCEECCCEEECCceEECCCcEEcCCcEEeCCCEECCCCEECCceEE
Confidence 45566666666666666666 555553 67778888887 56664 477777777777777743 566666666555433
Q ss_pred H-----------------hhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 370 A-----------------SLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 370 ~-----------------~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
. +.++++ |.||.+|.|. ++.||+++.|++++.+.+.+.++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~Ig~~---v~IG~~~~I~~g~~Ig~~~~IgagsvV~~~vp~~~v 144 (192)
T 3mqg_A 85 TNVYNPRAAIERKSEYRDTIVRQG---ATLGANCTVVCGATIGRYAFVGAGAVVNKDVPDFAL 144 (192)
T ss_dssp CSCSSCBTTBCCGGGCCCEEECTT---CEECTTCEECTTCEECTTCEECTTCEECSCBCTTEE
T ss_pred ecccCCccccccccccCCcEECCC---cEECCCCEECCCCEECCCCEEcCCCEECcccCCCCE
Confidence 2 355666 7888888887 8999999999999998888877764
|
| >2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A | Back alignment and structure |
|---|
Probab=99.23 E-value=5e-12 Score=118.62 Aligned_cols=138 Identities=12% Similarity=0.124 Sum_probs=83.9
Q ss_pred EEecCCHHHHHHHHHhhcCCC--CCCCccC-CCCCccc-cCccCCCeee-cCCccc-cceECCCCEEc-ceEEeeeEEcc
Q 014953 270 WEDIGTIRSFFEANLALTAHP--PMFSFYD-ATKPIYT-SRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGI 342 (415)
Q Consensus 270 ~~di~t~~~y~~an~~~l~~~--~~~~~~~-~~~~~~~-~~~i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i~~svig~ 342 (415)
..+|..+.+|-...+..+.+| ++..+.. .+..+.. .+.+.+++++ +++.|. ++.||++|+|+ ++.|.+|+|++
T Consensus 26 l~ri~al~~f~~v~~g~lgg~i~~e~nl~~~~~~~I~~~~a~I~~~a~I~~~~~I~g~~~Ig~~~~Ig~~~~I~~~~Ig~ 105 (334)
T 2pig_A 26 LRQVIAVTDFNDVKAGTSGGWVDADNVLSQQGDCWIYDENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISD 105 (334)
T ss_dssp EEEEEESSCBTTBCTTCEEEEESSTTSBCSSSSCEECCTTCEEETTCEECTTCEEESSCEEESSCEECTTCEEESCEEES
T ss_pred EEEEEEeeccccccCCccCCeEeccCCcccCCceEEcCCCeEEcCCcEECCCcEEeeeeeECCCcEECCCCEEEeEEEcC
Confidence 456666666666666666554 1111211 2223334 4555566666 566664 68888888888 68888999999
Q ss_pred CcEECCCcEEeecEEeCCccccchhHHH------------------hhhhCCCc--------ceEeCCCCEEeeeEECCC
Q 014953 343 RSRINANVHLKDTMMLGADFYETDAEVA------------------SLLAEGRV--------PVGIGENTKIKYEQLKPI 396 (415)
Q Consensus 343 ~~~ig~~~~i~~sii~~~~~~~~~~~~~------------------~~~~~~~~--------~~~Ig~~~~i~~~~i~~~ 396 (415)
+|.|+++++|.+|++++++.+..++++. +.++++.. .|.|+.||.|.+++|+++
T Consensus 106 ~~~I~~~s~I~~s~I~~~~~I~~~~~i~~~s~I~~~~~~~~~~~~g~~I~~~a~I~~s~I~~g~~I~~~a~I~~svI~~~ 185 (334)
T 2pig_A 106 GARISDNVTIQSSSVREECAIYGDARVLNQSEILAIQGLTHEHAQILQIYDRATVNHSRIVHQVQLYGNATITHAFIEHR 185 (334)
T ss_dssp SCEECTTCEEESCEEESSEEECTTCEEESSCEEEC--------CCCEEECTTCEEESCEEETTCEECTTCEEESEEECTT
T ss_pred CCEEeCCcEEeccEEcCCeEEecCCEEeCCEEEeecceeecccCCCeEECCCCEEeccEEcCCCEEcCCeEEeCcEEcCC
Confidence 9999999999998887777765555332 11111110 155555555656666666
Q ss_pred eEEcCCcccCc
Q 014953 397 CHIVETKYDSS 407 (415)
Q Consensus 397 ~~i~~~~~~~~ 407 (415)
+.|++++.+..
T Consensus 186 a~I~~~a~V~~ 196 (334)
T 2pig_A 186 AEVFDFALIEG 196 (334)
T ss_dssp CEECTTCEEEC
T ss_pred CEECCCcEECC
Confidence 66666665543
|
| >1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A | Back alignment and structure |
|---|
Probab=99.22 E-value=2.7e-11 Score=103.53 Aligned_cols=73 Identities=14% Similarity=0.066 Sum_probs=42.7
Q ss_pred ceECCCCEEc-ceEEe-----eeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEe-eeEEC
Q 014953 322 SIISHGSFIT-SSFIE-----HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-YEQLK 394 (415)
Q Consensus 322 ~~ig~~~~I~-~~~i~-----~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~~i~ 394 (415)
+.||++|.|+ ++.|. +++||++|.|++++.|.+++|+++ |.||.+|.|. ++.||
T Consensus 52 v~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~-------------------~~Ig~~~~i~~~~~Ig 112 (173)
T 1xhd_A 52 TIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILHSCHIKKD-------------------ALIGMGSIILDGAEIG 112 (173)
T ss_dssp EEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEEESCEECTT-------------------CEECTTCEECTTCEEC
T ss_pred EEECCCCEECCCCEEEeCCCCCeEECCCCEECCCCEEeCCEECCC-------------------CEEcCCCEEcCCCEEC
Confidence 4455555555 34444 455555555555555555555555 6777777766 67777
Q ss_pred CCeEEcCCcccC--ccccccc
Q 014953 395 PICHIVETKYDS--STISRFS 413 (415)
Q Consensus 395 ~~~~i~~~~~~~--~~~~~~~ 413 (415)
+++.|++++.+. +.|.+++
T Consensus 113 ~~~~Ig~~s~V~~~~~i~~~~ 133 (173)
T 1xhd_A 113 EGAFIGAGSLVSQGKKIPPNT 133 (173)
T ss_dssp TTCEECTTCEECTTCEECTTE
T ss_pred CCCEECCCCEECCCcEeCCCC
Confidence 777777777665 4455444
|
| >4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=5.4e-11 Score=105.87 Aligned_cols=125 Identities=12% Similarity=0.056 Sum_probs=92.8
Q ss_pred EecCCHHHHHHHHHhhcCCC-CCCCccCCCCCccccCccCCCeee-cCCccc-cceECCCCEEc-ceEEe-eeEEccCcE
Q 014953 271 EDIGTIRSFFEANLALTAHP-PMFSFYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-HSVVGIRSR 345 (415)
Q Consensus 271 ~di~t~~~y~~an~~~l~~~-~~~~~~~~~~~~~~~~~i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i~-~svig~~~~ 345 (415)
.-+++++...+..+.+.+.. ....++++.+.+...+.+++++.| +++.|. ++.||++|.|+ ++.|. +|+||++|+
T Consensus 76 iAIg~~~~R~~i~~~l~~~g~~~~~~i~~~a~i~~~v~IG~g~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~ 155 (220)
T 4ea9_A 76 VAIGDNRLRQKLGRKARDHGFSLVNAIHPSAVVSPSVRLGEGVAVMAGVAINADSWIGDLAIINTGAVVDHDCRLGAACH 155 (220)
T ss_dssp ECCCCHHHHHHHHHHHHHTTCEECCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCE
T ss_pred EecCCHHHHHHHHHHHHhcCCCcCCcCCCCCEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCCEECCCCEECCCCE
Confidence 34667665555555554332 223456777777777777777777 666664 78888888888 67775 688888888
Q ss_pred ECCCcEEee-cEEeCCccccchhHHHhhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 346 INANVHLKD-TMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 346 ig~~~~i~~-sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
|++++.|.+ +.|+++ |.||.++.|. ++.||+++.|++++.+.+.+..++.
T Consensus 156 i~~~~~i~~~v~Ig~~-------------------~~Ig~~~~i~~~~~Ig~~~~igagsvv~~~v~~~~~ 207 (220)
T 4ea9_A 156 LGPASALAGGVSVGER-------------------AFLGVGARVIPGVTIGADTIVGAGGVVVRDLPDSVL 207 (220)
T ss_dssp ECTTCEECSSCEECTT-------------------CEECTTCEECTTCEECTTCEECTTCEECSCBCTTCE
T ss_pred ECCCCEEcCCCEECCC-------------------CEECCCCEEcCCcEECCCCEECCCCEEccccCCCcE
Confidence 888888887 677777 8999999997 8999999999999988887776654
|
| >3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.6e-11 Score=104.51 Aligned_cols=91 Identities=13% Similarity=0.096 Sum_probs=51.7
Q ss_pred cceECCCCEEc-ceEEe----eeEEccCcEECCCcEEe------ecEEeCCccccchhHHH-hhhhCCCcceEeCCCCEE
Q 014953 321 DSIISHGSFIT-SSFIE----HSVVGIRSRINANVHLK------DTMMLGADFYETDAEVA-SLLAEGRVPVGIGENTKI 388 (415)
Q Consensus 321 ~~~ig~~~~I~-~~~i~----~svig~~~~ig~~~~i~------~sii~~~~~~~~~~~~~-~~~~~~~~~~~Ig~~~~i 388 (415)
++.||++|.|+ ++.|. +.+||++|.|++++.|. +++|++++.|+.++.+. +.++++ |.||.+|.|
T Consensus 51 ~v~IG~~~~I~~~~~I~~~~~~i~IG~~~~I~~~~~I~~~~~~g~~~Ig~~~~Ig~~~~i~~~~Ig~~---~~Ig~~~~I 127 (191)
T 3ixc_A 51 DVCIGKNASIWYGTVLRGDVDKIEVGEGTNIQDNTVVHTDSMHGDTVIGKFVTIGHSCILHACTLGNN---AFVGMGSIV 127 (191)
T ss_dssp EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEECC----CCEEECTTCEECTTCEECSCEECTT---CEECTTCEE
T ss_pred CcEECCCCEECCCCEEecCCCCeEECCCCEECCCCEEeecCCcCCeEECCCCEECCCCEEECCEECCC---CEECCCCEE
Confidence 34444444444 34442 22555555555555554 55555555555554443 234444 777777777
Q ss_pred e-eeEECCCeEEcCCcccC--cccccccc
Q 014953 389 K-YEQLKPICHIVETKYDS--STISRFSL 414 (415)
Q Consensus 389 ~-~~~i~~~~~i~~~~~~~--~~~~~~~~ 414 (415)
. ++.|++++.|++++.+. +.|.+++.
T Consensus 128 ~~~~~Ig~~~~Ig~gsvV~~~~~i~~~~~ 156 (191)
T 3ixc_A 128 MDRAVMEEGSMLAAGSLLTRGKIVKSGEL 156 (191)
T ss_dssp CTTCEECTTCEECTTCEECTTCEECTTEE
T ss_pred eCCeEECCCCEECCCCEECCCcCcCCCeE
Confidence 6 67777777777777766 56655543
|
| >3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A | Back alignment and structure |
|---|
Probab=99.19 E-value=4.8e-11 Score=103.34 Aligned_cols=73 Identities=14% Similarity=0.092 Sum_probs=47.6
Q ss_pred eECCCCEEc-ceEE------------eeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEe
Q 014953 323 IISHGSFIT-SSFI------------EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK 389 (415)
Q Consensus 323 ~ig~~~~I~-~~~i------------~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~ 389 (415)
.||++|.|+ ++.| .+++||++|.||+++.|.+++|+++ |.||.+|.|.
T Consensus 56 ~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~-------------------~~Ig~~~~I~ 116 (187)
T 3r3r_A 56 AIGARTNIQDGSVLHVTHKSSSNPHGNPLIIGEDVTVGHKVMLHGCTIGNR-------------------VLVGMGSIVL 116 (187)
T ss_dssp EECTTCEECTTCEEECBCCBTTBC-CBCEEECSSCEECTTCEEESCEECSS-------------------EEECTTCEEC
T ss_pred EECCCCEECCCCEEecCCccccCCCCCCeEECCCCEECCCCEEeCcEECCC-------------------CEECCCCEEC
Confidence 555555555 4555 4556666666666666666555555 7788888875
Q ss_pred -eeEECCCeEEcCCcccC--cccccccc
Q 014953 390 -YEQLKPICHIVETKYDS--STISRFSL 414 (415)
Q Consensus 390 -~~~i~~~~~i~~~~~~~--~~~~~~~~ 414 (415)
++.||+++.|++++.+. +.+-+++.
T Consensus 117 ~~~~Ig~~~~Ig~~s~V~~~~~i~~~~v 144 (187)
T 3r3r_A 117 DGAIIEDDVMIGAGSLVPQHKRLESGYL 144 (187)
T ss_dssp TTCEECSSEEECTTCEECTTCEECTTEE
T ss_pred CCCEECCCCEECCCCEECCCcCcCCCcE
Confidence 77888888888887766 56655543
|
| >1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A | Back alignment and structure |
|---|
Probab=99.19 E-value=5.4e-11 Score=101.70 Aligned_cols=92 Identities=12% Similarity=0.016 Sum_probs=55.9
Q ss_pred cCCCCCccccCccCCCeee-cCCcccc----ceECCCCEEc-ceEEe-----eeEEccCcEECCCcEEeecEEeCCcccc
Q 014953 296 YDATKPIYTSRRNLPPSKI-DDSKIVD----SIISHGSFIT-SSFIE-----HSVVGIRSRINANVHLKDTMMLGADFYE 364 (415)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~i-~~~~i~~----~~ig~~~~I~-~~~i~-----~svig~~~~ig~~~~i~~sii~~~~~~~ 364 (415)
+++.+.+...+.+++++.+ +++.+.. +.||++|.|+ ++.|. +++||++|.|++++.|.+++|+++
T Consensus 19 I~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~---- 94 (173)
T 1v3w_A 19 VDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHGAKVGNY---- 94 (173)
T ss_dssp ECTTSEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEESCEECSS----
T ss_pred ECCCCEEeCCEEECCCCEECCCeEEecCCceEEECCCCEECCCcEEEecCCCCeEECCCCEECCCCEECCCEECCC----
Confidence 3444444444455555555 4555542 6777777777 56665 477788888877777777777777
Q ss_pred chhHHHhhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccC
Q 014953 365 TDAEVASLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDS 406 (415)
Q Consensus 365 ~~~~~~~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~ 406 (415)
|.||.+|.|. ++.||+++.|++++.+.
T Consensus 95 ---------------~~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~ 122 (173)
T 1v3w_A 95 ---------------VIIGISSVILDGAKIGDHVIIGAGAVVP 122 (173)
T ss_dssp ---------------EEECTTCEECTTCEECSSEEECTTCEEC
T ss_pred ---------------CEECCCCEEeCCCEECCCCEECCCCEEC
Confidence 5555555544 45555555555555443
|
| >3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.18 E-value=7.8e-11 Score=111.80 Aligned_cols=97 Identities=13% Similarity=0.120 Sum_probs=49.4
Q ss_pred EecCCHHHHHHHHHhhcCC-CCCCCccCCCCCccccCccCCCeee-cCCccc-cceECCCCEEc-ceEE-eeeEEccCcE
Q 014953 271 EDIGTIRSFFEANLALTAH-PPMFSFYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFI-EHSVVGIRSR 345 (415)
Q Consensus 271 ~di~t~~~y~~an~~~l~~-~~~~~~~~~~~~~~~~~~i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i-~~svig~~~~ 345 (415)
+-+.+|...+.-...++.. ......++|.+.+.+++.++++++| +++.|. ++.||++|+|+ ++.| .++.||++|.
T Consensus 74 ~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~a~i~~~a~ig~~~~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~ 153 (341)
T 3eh0_A 74 LVVKNPYLTYARMAQILDTTPQPAQNIAPSAVIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSR 153 (341)
T ss_dssp EECSCHHHHHHHHHHHHCCCCCSCCSBCTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCE
T ss_pred EEeCCHHHHHHHHHHHhcccCCccCccCCCcEECCCcEECCCCEECCCcEECCCcEECCCcEECCCcEECCCCEECCCcE
Confidence 4567787755544444443 2333456666666666666666655 444443 45555555554 3444 3444444444
Q ss_pred ECCCcEE-eecEEeCCccccchh
Q 014953 346 INANVHL-KDTMMLGADFYETDA 367 (415)
Q Consensus 346 ig~~~~i-~~sii~~~~~~~~~~ 367 (415)
|++++.| .++.|+++++|.+++
T Consensus 154 I~~~~~I~~~~~IG~~~~I~~g~ 176 (341)
T 3eh0_A 154 LWANVTIYHEIQIGQNCLIQSGT 176 (341)
T ss_dssp ECSSCEECTTCEECSSCEECTTC
T ss_pred ECCCcEECCCCEECCccEEcCCc
Confidence 4444444 334444444444443
|
| >4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A | Back alignment and structure |
|---|
Probab=99.17 E-value=9.1e-11 Score=111.88 Aligned_cols=101 Identities=11% Similarity=0.035 Sum_probs=54.3
Q ss_pred eEEecCCHHHHHHHHHhhcCCCCCCCccCCCCCccccCccCCCeee-cCCccc-cceECCCCEEc-ceEEe-eeEEccCc
Q 014953 269 YWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-HSVVGIRS 344 (415)
Q Consensus 269 ~~~di~t~~~y~~an~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i~-~svig~~~ 344 (415)
.|.-+.+|...+.-...++...+....++|.+.+.+++.+++++.| +++.|. ++.||++|+|+ ++.|. ++.||++|
T Consensus 78 ~~i~~~~p~~~~~~~~~~~~~~~~~~~i~p~a~I~~~a~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~ 157 (357)
T 4e79_A 78 NFIIVDNPYLAFAILTHVFDKKISSTGIESTARIHPSAVISETAYIGHYVVIGENCVVGDNTVIQSHTKLDDNVEVGKDC 157 (357)
T ss_dssp EEEECSCHHHHHHHHHTTSSCCCCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSC
T ss_pred cEEEECCHHHHHHHHHHHhccccccCeeCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCC
Confidence 3566788887655544454433222556666666666666666655 444443 45555555555 34443 45555555
Q ss_pred EECCCcEE-eecEEeCCccccchhHH
Q 014953 345 RINANVHL-KDTMMLGADFYETDAEV 369 (415)
Q Consensus 345 ~ig~~~~i-~~sii~~~~~~~~~~~~ 369 (415)
.|++++.| .+++|+++++|.+++.+
T Consensus 158 ~I~~~~~I~~~~~IG~~~~I~~g~~I 183 (357)
T 4e79_A 158 FIDSYVTITGSSKLRDRVRIHSSTVI 183 (357)
T ss_dssp EECTTCEECTTCEECSSCEECTTCEE
T ss_pred EECCCcEEecccEEEeEeeccCCeEE
Confidence 55555555 33445555555444443
|
| >3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A | Back alignment and structure |
|---|
Probab=99.15 E-value=1.3e-10 Score=102.71 Aligned_cols=109 Identities=12% Similarity=0.040 Sum_probs=68.2
Q ss_pred ccCCCCCccccCccCCCeee-cCCccc-----cceECCCCEEc-ceEEee---------------eEEccCcEECCCcEE
Q 014953 295 FYDATKPIYTSRRNLPPSKI-DDSKIV-----DSIISHGSFIT-SSFIEH---------------SVVGIRSRINANVHL 352 (415)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~i-~~~~i~-----~~~ig~~~~I~-~~~i~~---------------svig~~~~ig~~~~i 352 (415)
++++.+.+...+.|++++.| +++.|. ++.||++|.|+ ++.|.. ++||++|.|++++.|
T Consensus 47 ~I~~~a~i~~~v~IG~~~~I~~~~~I~~~~~~~v~IG~~~~Ig~~~~I~~~~~~~~ig~~~~~~~~~IG~~v~Ig~~~~I 126 (213)
T 3kwd_A 47 YVHSFSNLIGDVRIKDYVHIAPGTSIRADEGTPFHIGSRTNIQDGVVIHGLQQGRVIGDDGQEYSVWIGDNVSITHMALI 126 (213)
T ss_dssp EECTTSEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECSSCCEECTTSCEESEEECTTCEECTTCEE
T ss_pred EECCCCEEeCceEECCCCEEcCCcEEecCCCCceEECCCCEECCCCEEEecCCCceeccCCcccceEECCCcEECCCcEE
Confidence 34455555555566666666 556663 36778888887 577753 778888888888888
Q ss_pred ee-cEEeCCccccchhHHH-hhhhCCCcceEeCCCCEEeeeEECCCeEEcCCcccC
Q 014953 353 KD-TMMLGADFYETDAEVA-SLLAEGRVPVGIGENTKIKYEQLKPICHIVETKYDS 406 (415)
Q Consensus 353 ~~-sii~~~~~~~~~~~~~-~~~~~~~~~~~Ig~~~~i~~~~i~~~~~i~~~~~~~ 406 (415)
.+ ++|++++.|+.++.+. +.++++ |.||+++.|.+++|++++.|++++.+.
T Consensus 127 ~~~v~Ig~~v~IG~~a~I~~~~Ig~~---~~Igags~V~~~~i~~~~~v~~~~vv~ 179 (213)
T 3kwd_A 127 HGPAYIGDGCFIGFRSTVFNARVGAG---CVVMMHVLIQDVEIPPGKYVPSGMVIT 179 (213)
T ss_dssp EEEEEECTTCEECTTCEEEEEEECTT---CEECSSCEEESCEECTTBEECTTCEEC
T ss_pred cCCCEECCCCEECCCCEEeCcEECCC---CEEcCCCEECCcEeCCCCEECCCcEEc
Confidence 77 7777776666555443 234444 555555555555556666666555443
|
| >3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-10 Score=100.84 Aligned_cols=56 Identities=14% Similarity=0.054 Sum_probs=33.6
Q ss_pred EEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccC--ccccccc
Q 014953 339 VVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDS--STISRFS 413 (415)
Q Consensus 339 vig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~--~~~~~~~ 413 (415)
+||++|.||+++.|.+++|+++ |.||.+|.|. ++.||+++.|++++.+. +.|-+++
T Consensus 89 ~Ig~~~~Ig~~~~i~~~~Ig~~-------------------~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~g~~i~~~~ 147 (189)
T 3r1w_A 89 IIGDDVTIGHQAMLHGCTIGNR-------------------VLIGMKSMIMDGAIVEDEVIVAAGATVSPGKVLESGF 147 (189)
T ss_dssp EECSSEEECTTCEEESCEECSS-------------------EEECTTCEECTTCEECSSCEECTTCEECTTCEECTTE
T ss_pred EECCCCEECCCCEEeCcEECCC-------------------cEECCCCEEcCCCEECCCCEEccCCEECCCCEeCCCC
Confidence 5555555555555555555555 6666666664 66666666666666655 4554443
|
| >3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.13 E-value=7.8e-11 Score=102.65 Aligned_cols=27 Identities=15% Similarity=-0.044 Sum_probs=13.5
Q ss_pred eEeCCCCEEe-eeEECCCeEEcCCcccC
Q 014953 380 VGIGENTKIK-YEQLKPICHIVETKYDS 406 (415)
Q Consensus 380 ~~Ig~~~~i~-~~~i~~~~~i~~~~~~~ 406 (415)
|.||.+|.|. ++.||++|.|++++.+.
T Consensus 109 ~~Ig~~~~I~~gv~IG~~~~IgagsvV~ 136 (194)
T 3tv0_A 109 NVIESKAYVGRNVILTSGCIIGACCNLN 136 (194)
T ss_dssp CEECTTCEECTTEEECSSCEECTTCEEC
T ss_pred ceecceeeECCeEEECCCCEECCCCEEC
Confidence 4455555554 55555555555554443
|
| >3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.4e-10 Score=102.05 Aligned_cols=90 Identities=16% Similarity=0.101 Sum_probs=55.8
Q ss_pred ceECCCCEEc-ceEEe-eeEEccCcEECCCcEE----eecEEeCCccccchhHHH-------------------------
Q 014953 322 SIISHGSFIT-SSFIE-HSVVGIRSRINANVHL----KDTMMLGADFYETDAEVA------------------------- 370 (415)
Q Consensus 322 ~~ig~~~~I~-~~~i~-~svig~~~~ig~~~~i----~~sii~~~~~~~~~~~~~------------------------- 370 (415)
+.||++|.|+ ++.|. ++.||++|.|++++.| .+++|++++.|+.++.+.
T Consensus 53 v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (205)
T 3vbi_A 53 ISIGNNVRIDDFCILSGKVTIGSYSHIAAYTALYGGEVGIEMYDFANISSRTIVYAAIDDFSGNALMGPTIPNQYKNVKT 132 (205)
T ss_dssp EEECSSEEECTTCEEEEEEEECSSEEECTTCEEEEEEEEEEECTTCEECTTCEEESEECCCSSSSCCSTTSCGGGCCCEE
T ss_pred eEECCCCEECCCCEEccceEECCCCEECCCeEEEcCCccEEECCCCEECCCcEEEeCCCCcccccccCcccccccceecc
Confidence 4444444444 34442 4555555555555555 225555555555554441
Q ss_pred --hhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 371 --SLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 371 --~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
..|+++ |.||.+|.|. ++.||+++.|++++.+.+.+..++.
T Consensus 133 ~~v~IG~~---v~IG~~~~I~~gv~Ig~~~~Ig~gsvV~~~v~~~~v 176 (205)
T 3vbi_A 133 GKVILKKH---VIIGAHSIIFPNVVIGEGVAVGAMSMVKESLDDWYI 176 (205)
T ss_dssp CCEEECTT---CEECTTCEECSSCEECTTCEECTTCEECSCBCTTEE
T ss_pred CCEEECCC---CEECCCCEEcCCCEECCCCEEcCCCEECCccCCCeE
Confidence 234444 8888888887 8999999999999988888877664
|
| >3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.11 E-value=3.2e-10 Score=108.61 Aligned_cols=45 Identities=7% Similarity=-0.090 Sum_probs=24.1
Q ss_pred EEecCCHHHHHHHHHhhcCCC-CCCCccCCCCCccccCccCCCeee
Q 014953 270 WEDIGTIRSFFEANLALTAHP-PMFSFYDATKPIYTSRRNLPPSKI 314 (415)
Q Consensus 270 ~~di~t~~~y~~an~~~l~~~-~~~~~~~~~~~~~~~~~i~~~~~i 314 (415)
+.-+.+|+..+.....++... .....++|.+.+.+++.++++++|
T Consensus 95 ~l~~~~p~~~~~~~~~~~~~~~~~~~~i~p~a~i~~~a~Ig~~~~I 140 (372)
T 3pmo_A 95 ALVVANPYLAYASLSHLFDRKPKAAAGIHPTAIVAADAEVDPSASV 140 (372)
T ss_dssp EEECSCHHHHHHHHHGGGCCCCCCCSEECTTCEECTTCEECTTCEE
T ss_pred EEEECCHHHHHHHHHHHhccccccccccCCCCEECCCCEECCCCEE
Confidence 455677776665545555433 223345666555555555555544
|
| >1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=1.6e-10 Score=105.93 Aligned_cols=35 Identities=20% Similarity=0.323 Sum_probs=20.3
Q ss_pred eEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 380 VGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 380 ~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
|.||.++.|. ++.||+++.|++++.+.+.+-+|++
T Consensus 147 ~~Ig~~a~V~~~v~IG~~a~Ig~~s~V~~dvp~~~~ 182 (270)
T 1j2z_A 147 VNIGGLTAIHQFVRIAKGCMIAGKSALGKDVPPYCT 182 (270)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEECSBBCTTEE
T ss_pred eEEecCCEECCCcEeCCceEEecCcEecccCCCCeE
Confidence 3444444444 5666666666666666666666654
|
| >4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.05 E-value=3.1e-10 Score=104.86 Aligned_cols=35 Identities=11% Similarity=0.165 Sum_probs=18.9
Q ss_pred eEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 380 VGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 380 ~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
|.||.++.|. ++.|++++.|++++.+.+.+-+|++
T Consensus 168 ~~Ig~~a~V~~~v~Ig~~~vvg~~s~V~~dvp~~~~ 203 (283)
T 4eqy_A 168 AIVGGMSGVHQYVRIGAHSMLGGASALVQDIPPFVI 203 (283)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEECSBBCTTEE
T ss_pred eEEecCCEEcCCeEECCCcEECCCCeEecccCCCcE
Confidence 3344444444 4555555556666666666666553
|
| >3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=2.5e-10 Score=104.08 Aligned_cols=91 Identities=11% Similarity=0.125 Sum_probs=50.7
Q ss_pred cceECCCCEEc-ceEE--------------eeeEEccCcEECCCcEEe-------ecEEeCCccccchhHHH--------
Q 014953 321 DSIISHGSFIT-SSFI--------------EHSVVGIRSRINANVHLK-------DTMMLGADFYETDAEVA-------- 370 (415)
Q Consensus 321 ~~~ig~~~~I~-~~~i--------------~~svig~~~~ig~~~~i~-------~sii~~~~~~~~~~~~~-------- 370 (415)
++.||++|.|+ ++.| .+++||++|.|++++.|. ++.|++++.+..++.+.
T Consensus 48 ~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~ 127 (259)
T 3hsq_A 48 GSEIGKFNRFHQGAVIGVMPQDLGFNQQLLTKTVIGDHNIFREYSNIHKGTKEDSPTVIGNKNYFMGNSHVGHDCILGNN 127 (259)
T ss_dssp TEEECSSCEECTTCEEEECCSCTTCCTTSCCCEEECSSCEECTTCEEECCSBTTBCEEECSSCEECTTCEECTTCEECSS
T ss_pred CcEECCCcEECCCCEECCCcccccccCccCCcEEECCCcEECCCCEECCCccCCCcEEECCCcEEcCCcEECCCcEECCc
Confidence 35666666666 4555 356777777777777776 34444443333332221
Q ss_pred ------------hhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 371 ------------SLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 371 ------------~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
+.++++ |.||.++.|. ++.||+++.|++++.+.+.+.+|++
T Consensus 128 ~~i~~~~~i~~~v~Igd~---~~Ig~~a~V~~~v~Ig~~~~Vg~~s~V~~dvp~~~~ 181 (259)
T 3hsq_A 128 NILTHGAVLAGHVTLGNF---AFISGLVAVHQFCFVGDYSMVAGLAKVVQDVPPYST 181 (259)
T ss_dssp CEECTTCEECTTCEECSS---CEECSSEEECTTCEECTTCEECSSEEECSBBCTTEE
T ss_pred cEEcCCceECCccEECCC---cEEeCCCEECCCCEECCCCEECCCCEEcccCCCCcE
Confidence 122333 4444445554 5666666677777777777776664
|
| >3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0 | Back alignment and structure |
|---|
Probab=99.05 E-value=3.2e-10 Score=103.84 Aligned_cols=91 Identities=21% Similarity=0.242 Sum_probs=51.9
Q ss_pred cceECCCCEEc-ceEE--------------eeeEEccCcEECCCcEEee--------cEEeCCccccchhHH--------
Q 014953 321 DSIISHGSFIT-SSFI--------------EHSVVGIRSRINANVHLKD--------TMMLGADFYETDAEV-------- 369 (415)
Q Consensus 321 ~~~ig~~~~I~-~~~i--------------~~svig~~~~ig~~~~i~~--------sii~~~~~~~~~~~~-------- 369 (415)
++.||++|.|+ ++.| .+++||++|.|++++.|.. +.|++++.+..++.+
T Consensus 52 ~~~IG~~~~I~~~a~I~~~~~~~~~~g~~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~ 131 (266)
T 3r0s_A 52 DTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVIGKNATIREFATINSGTAKGDGFTRIGDNAFIMAYCHIAHDCLLGN 131 (266)
T ss_dssp SCEECTTCEECTTCEEEECCSCSCCC----CEEEECTTCEECTTCEEECCCTTTTSEEEECTTCEECTTCEECTTCEECS
T ss_pred CcEECCCcEEccCceeccCCccccccCCcCceEEECCCCEECCceEecCCcccCCccEEECCCceeCCcceEccccccCC
Confidence 45666666666 4556 4666777777776666653 444444443333322
Q ss_pred ----------H--hhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 370 ----------A--SLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 370 ----------~--~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
. ..++++ |.||.++.|. ++.||+++.|++++.+.+.+.+|++
T Consensus 132 ~~~i~~~~~i~~~v~Igd~---~~Ig~~a~V~~~v~Ig~~a~Vg~~s~V~~dvp~~~~ 186 (266)
T 3r0s_A 132 NIILANNATLAGHVELGDF---TVVGGLTPIHQFVKVGEGCMIAGASALSQDIVPFCL 186 (266)
T ss_dssp SCEECTTCEECTTCEECTT---CEECTTCEECTTCEECTTCEECSSCBBCSCBCTTEE
T ss_pred CeEECCCceecCCeEECCC---cEEccCCEECCCcEECCCCEEccCCeEecccCCCeE
Confidence 1 223333 4455555554 5666777777777777777777764
|
| >3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.04 E-value=3.9e-10 Score=105.31 Aligned_cols=58 Identities=9% Similarity=0.039 Sum_probs=29.5
Q ss_pred ccCCCCCccccCccCCCeee-cCCccc-cceECCCCEEc-ceEEe-eeEEccCcEECCCcEE
Q 014953 295 FYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHL 352 (415)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i~-~svig~~~~ig~~~~i 352 (415)
.++|.+.+.+++.+++++.| +++.|. ++.||++|.|+ ++.|. ++.||++|.|++++.|
T Consensus 9 ~I~p~A~I~~~a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I 70 (305)
T 3t57_A 9 LIHPSAVVHPNAVIGKGVSVGPYCTIGSSVKLGNGCKLYPSSHVFGNTELGESCVLMTGAVV 70 (305)
T ss_dssp CBCTTSEECTTSEECTTCEECTTCEECTTEEECTTCEECTTCEECSSEEECTTCEECTTCEE
T ss_pred eECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCCcEEccCcEe
Confidence 45555555555555555555 444443 45555555555 34443 4444444444444444
|
| >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=2.4e-10 Score=111.13 Aligned_cols=85 Identities=24% Similarity=0.330 Sum_probs=61.0
Q ss_pred ccccCccCCCeee-cCCcc------c-cceECCCCEEc-ceEEe-eeEEccCcEECCCcEEeecEEeCCccccchhHHH-
Q 014953 302 IYTSRRNLPPSKI-DDSKI------V-DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVA- 370 (415)
Q Consensus 302 ~~~~~~i~~~~~i-~~~~i------~-~~~ig~~~~I~-~~~i~-~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~- 370 (415)
+.+.+.+.+++.+ +++.| . ++.||++|.|+ ++.|. +++||++|.||+++.|.+++|++++.|+.++.+.
T Consensus 235 i~~~~~i~~~~~ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~ 314 (401)
T 2ggo_A 235 VEDNVKIKGKVIIEEDAEIKSGTYIEGPVYIGKGSEIGPNSYLRPYTILVEKNKIGASVEVKESVIMEGSKIPHLSYVGD 314 (401)
T ss_dssp ECSSCEEESCEEECTTCEECTTCEEESSEEECTTCEECSSCEECTTEEECSSCEEEETCEEESEEECTTCEEEESCEEES
T ss_pred eCCCCEEcCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCcEECCCCEECCCCEEecCEEcCCcEECCCceEcc
Confidence 4455555555555 34444 2 56788888887 67775 7999999999999999999999998888877663
Q ss_pred hhhhCCCcceEeCCCCEEe
Q 014953 371 SLLAEGRVPVGIGENTKIK 389 (415)
Q Consensus 371 ~~~~~~~~~~~Ig~~~~i~ 389 (415)
+.++++ |.||++|.|.
T Consensus 315 ~~Ig~~---~~Ig~~~~i~ 330 (401)
T 2ggo_A 315 SVIAED---VNFGAGTLIA 330 (401)
T ss_dssp CEECTT---CEECTTCEEC
T ss_pred eEECCC---cEECCCcEEc
Confidence 355666 6666666654
|
| >1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A | Back alignment and structure |
|---|
Probab=99.01 E-value=1.1e-09 Score=99.04 Aligned_cols=65 Identities=9% Similarity=-0.028 Sum_probs=40.8
Q ss_pred eEEccCcEECCCcEEee-cEEeCCccccchhHHH-hhhhCCCcceEeCCCCEEeeeEECCCeEEcCCccc
Q 014953 338 SVVGIRSRINANVHLKD-TMMLGADFYETDAEVA-SLLAEGRVPVGIGENTKIKYEQLKPICHIVETKYD 405 (415)
Q Consensus 338 svig~~~~ig~~~~i~~-sii~~~~~~~~~~~~~-~~~~~~~~~~~Ig~~~~i~~~~i~~~~~i~~~~~~ 405 (415)
++||++|.||+++.|.+ ++|++++.|+.++.+. +.++++ |.||.++.|.++.|++++.|++++.+
T Consensus 141 v~IG~~v~Ig~~~~I~~~~~Ig~~v~IG~~a~I~~v~Ig~~---~~IgagsvV~~~~I~~~~~v~~g~vv 207 (247)
T 1qre_A 141 VYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFKSKVGNN---CVLEPRSAAIGVTIPDGRYIPAGMVV 207 (247)
T ss_dssp EEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEECTT---CEECTTCEEESCEECTTBEECTTCEE
T ss_pred eEECCCCEECCCCEEcCCcEECCCCEECCCCEEeceEECCC---CEECCCCEECCeEeCCCCEECCCCEE
Confidence 67777777777777777 7777776666665443 244555 55555555555555666666555543
|
| >4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.00 E-value=4.2e-10 Score=104.00 Aligned_cols=82 Identities=11% Similarity=0.108 Sum_probs=51.0
Q ss_pred cceECCCCEEc-ceEE-------------eeeEEccCcEECCCcEEee--------cEEeCCccccchhHHH--hhhhCC
Q 014953 321 DSIISHGSFIT-SSFI-------------EHSVVGIRSRINANVHLKD--------TMMLGADFYETDAEVA--SLLAEG 376 (415)
Q Consensus 321 ~~~ig~~~~I~-~~~i-------------~~svig~~~~ig~~~~i~~--------sii~~~~~~~~~~~~~--~~~~~~ 376 (415)
++.||++|.|+ ++.| .+++||++|.|++++.|.. ++|++++.+..++.+. +.++++
T Consensus 70 ~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~g~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~ 149 (283)
T 4eqy_A 70 HTTIGEDNRIGHYASVGGRPQDMKYKDEPTRLVIGDRNTIREFTTIHTGTVQDAGVTTLGDDNWIMAYVHIGHDCRVGSH 149 (283)
T ss_dssp EEEECSSCEECTTEEEEECCCCTTCCCCCCEEEECSSCEECTTEEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSS
T ss_pred CcEECCCcEEcCCcEECCCCccccccCCCceEEECCCcccCcceeEccceecCCCceEECCCcEECceeEEcCCcEECCC
Confidence 67788888887 5777 3788888888888888875 6677776666665442 344444
Q ss_pred CcceEeCCCCEEe-eeEECCCeEEcCCccc
Q 014953 377 RVPVGIGENTKIK-YEQLKPICHIVETKYD 405 (415)
Q Consensus 377 ~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~ 405 (415)
|.|+.++.+. +++||+++.|+.++.+
T Consensus 150 ---v~i~~~~~i~~~v~Igd~~~Ig~~a~V 176 (283)
T 4eqy_A 150 ---VVLSSNAQMAGHVEIGDWAIVGGMSGV 176 (283)
T ss_dssp ---CEECTTCEECTTCEECTTCEECTTCEE
T ss_pred ---cEECCCceEcCCcEECCCeEEecCCEE
Confidence 4444444443 3444444444444443
|
| >3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.00 E-value=6.2e-10 Score=101.04 Aligned_cols=75 Identities=16% Similarity=0.134 Sum_probs=58.6
Q ss_pred cceECCCCEEc-ceEEe----eeEEccCcEECCCcEEeec--------------------EEeCCccccchhHHHhhhhC
Q 014953 321 DSIISHGSFIT-SSFIE----HSVVGIRSRINANVHLKDT--------------------MMLGADFYETDAEVASLLAE 375 (415)
Q Consensus 321 ~~~ig~~~~I~-~~~i~----~svig~~~~ig~~~~i~~s--------------------ii~~~~~~~~~~~~~~~~~~ 375 (415)
++.||++|.|+ ++.|. ++.||++|.||+++.|.++ +|+++
T Consensus 105 ~v~IG~~~~Ig~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~v~Igd~--------------- 169 (252)
T 3jqy_B 105 KVIIGRRTTIGAGFEVVTDKCNVTIGHDCMIARDVILRASDGHPIFDIHSKKRINWAKDIIISSY--------------- 169 (252)
T ss_dssp EEEECTTCEECTTCEEECSSSEEEECTTCEECSSEEEECSCSSCEEETTTCBBCCCCCCEEECSS---------------
T ss_pred EEEECCCCEECCCcEEEeCCCCeEECCCCEEcCCcEEecCCCcccccccccccccccCCeEEecC---------------
Confidence 56777777777 56666 7788888888888887775 44444
Q ss_pred CCcceEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 376 GRVPVGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 376 ~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
|.||.+|.|. ++.||+++.|++++.+.+.+-.+++
T Consensus 170 ----v~IG~~a~I~~gv~IG~~~~IgagsvV~~~vp~~~~ 205 (252)
T 3jqy_B 170 ----VWVGRNVSIMKGVSVGSGSVIGYGSIVTKDVPSMCA 205 (252)
T ss_dssp ----CEECSSEEECTTCEECTTCEECTTCEECSCBCTTEE
T ss_pred ----cEECCCCEECCCCEECCCCEECCCCEECcccCCCCE
Confidence 8899999887 8999999999999988888777664
|
| >4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=6.1e-10 Score=101.91 Aligned_cols=57 Identities=12% Similarity=0.253 Sum_probs=35.4
Q ss_pred cEEeCCccccchhHHH--hhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 355 TMMLGADFYETDAEVA--SLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 355 sii~~~~~~~~~~~~~--~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
+.|++++.+..++.+. ..++++ |.||.++.|. ++.|++++.|++++.+.+.+-+|++
T Consensus 129 ~~Ig~~~~i~~~~~i~~~v~Igd~---~~Ig~~a~V~~~v~Ig~~~~i~~~svV~~dvp~~~~ 188 (265)
T 4e6u_A 129 CIVGDHNIFANNVGVAGHVHIGDH---VIVGGNSGIHQFCKIDSYSMIGGASLILKDVPAYVM 188 (265)
T ss_dssp CEECSSCEECTTCEECTTCEECSS---CEECTTCEECTTCEECTTCEECTTCEECSBBCTTEE
T ss_pred EEECCCcEEcCCcEECCCcEECCC---eEEcCCCEECCCcEECCCCEEcCCCEEcccCCCCeE
Confidence 3444444444443332 344555 6666666666 6778888888888888887777764
|
| >3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=7.5e-10 Score=101.81 Aligned_cols=74 Identities=18% Similarity=0.103 Sum_probs=42.8
Q ss_pred cCCCCCccccCccCCCeee-cCCccc-cceECCCCEEc-ceEEee---------------eEEccCcEECCCcEEe-ecE
Q 014953 296 YDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEH---------------SVVGIRSRINANVHLK-DTM 356 (415)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i~~---------------svig~~~~ig~~~~i~-~si 356 (415)
+++.+.+.+++.+++++.| +++.|. ++.||++|+|+ ++.|.+ ++||++|.|++++.|. +++
T Consensus 11 I~~~a~I~~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~ 90 (273)
T 3fs8_A 11 IKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDFYNDRINKKHPLIIGENALIRTENVIYGDTI 90 (273)
T ss_dssp ECTTCEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEEEECCTTHHHHTCCCCCCEEECTTCEECTTCEEESSCE
T ss_pred ECCCcEECCCCEECCCcEECCCCEECCCCEECCCcEECCCcEeCCccccccccccccccceEECCCCEECCCCEEeCCCE
Confidence 4444445455555555555 445553 56666666666 455543 6777777777777763 466
Q ss_pred EeCCccccchhHH
Q 014953 357 MLGADFYETDAEV 369 (415)
Q Consensus 357 i~~~~~~~~~~~~ 369 (415)
|++++.|+.++.+
T Consensus 91 Ig~~~~Ig~~~~I 103 (273)
T 3fs8_A 91 IGDNFQTGHKVTI 103 (273)
T ss_dssp ECTTCEECSSCEE
T ss_pred ECCCCEECCceEE
Confidence 6666555555544
|
| >3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.98 E-value=8.6e-10 Score=95.99 Aligned_cols=77 Identities=18% Similarity=0.187 Sum_probs=47.3
Q ss_pred ceECCCCEEc-ceEEe-----------------eeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeC
Q 014953 322 SIISHGSFIT-SSFIE-----------------HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIG 383 (415)
Q Consensus 322 ~~ig~~~~I~-~~~i~-----------------~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig 383 (415)
+.||++|.|+ ++.|. .++||+++.|+.++.+.++.|++++.|+.++.+. .+ |+||
T Consensus 52 i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~----~g---v~IG 124 (194)
T 3tv0_A 52 IVIGEGNLIEEQALIINAYPDNITPDTEDPEPKPMIIGTNNVFEVGCYSQAMKMGDNNVIESKAYVG----RN---VILT 124 (194)
T ss_dssp EEECTTCEECTTCEEEECCCSCC---------CCEEECSSCEECTTCEECCSEECSSCEECTTCEEC----TT---EEEC
T ss_pred eEECCCccccCCcccccccccccccccccCcCCceEECCcceEecceeEeeeeecccceecceeeEC----Ce---EEEC
Confidence 4566666666 45552 3567777777777777777777776666655443 22 5666
Q ss_pred CCCEEe-eeEECCCeEEcCCccc
Q 014953 384 ENTKIK-YEQLKPICHIVETKYD 405 (415)
Q Consensus 384 ~~~~i~-~~~i~~~~~i~~~~~~ 405 (415)
+||.|. +++|.++++|++++.+
T Consensus 125 ~~~~IgagsvV~~~~~Ip~~svv 147 (194)
T 3tv0_A 125 SGCIIGACCNLNTFEVIPENTVI 147 (194)
T ss_dssp SSCEECTTCEECCCEEECTTEEE
T ss_pred CCCEECCCCEECCCcEECCCCEE
Confidence 666665 6666666666666543
|
| >4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=8.2e-10 Score=101.08 Aligned_cols=57 Identities=16% Similarity=0.096 Sum_probs=23.9
Q ss_pred cCCCCCccccCccCCCeee-cCCccc-cceECCCCEEc-ceEEe-eeEEccCcEECCCcEE
Q 014953 296 YDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHL 352 (415)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i~-~svig~~~~ig~~~~i 352 (415)
++|.+.+.+.+.+++++.| +++.|. ++.||++|.|+ ++.|. ++.||++|.|++++.|
T Consensus 10 I~p~a~i~~~a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I 70 (265)
T 4e6u_A 10 IHSTAIIDPSAVIASDVQIGPYCIIGPQVTIGAGTKLHSHVVVGGFTRIGQNNEIFQFASV 70 (265)
T ss_dssp BCTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSSEEECSSCEECTTCEE
T ss_pred ECCCCEECCCCEECCCCEECCCeEECCCCEECCCCEEcCCcEEeCCcEECCCCEEcCCcEE
Confidence 3444444444444444444 333332 34444444444 33332 3444444444444444
|
| >2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A | Back alignment and structure |
|---|
Probab=98.97 E-value=1.1e-09 Score=100.09 Aligned_cols=35 Identities=9% Similarity=0.099 Sum_probs=21.2
Q ss_pred eEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 380 VGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 380 ~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
|.||.++.|. ++.||+++.|++++.+.+.+-+|++
T Consensus 151 ~~Ig~~~~I~~~v~Ig~~~~ig~~s~V~~~v~~~~~ 186 (262)
T 2qia_A 151 AIIGGMTAVHQFCIIGAHVMVGGCSGVAQDVPPYVI 186 (262)
T ss_dssp CEECTTCEECTTCEECTTCEECSSCEECSBBCTTEE
T ss_pred cEEccCCEECCCCEECCCCEEccCCEECCcCCCCeE
Confidence 4444444444 5666666777777777766666654
|
| >3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.2e-09 Score=93.19 Aligned_cols=103 Identities=12% Similarity=0.047 Sum_probs=73.9
Q ss_pred cCCCCCccccCccCCCeee-cCCccc----cceECCCCEEc-ceEEe------eeEEccCcEECCCcEEeecEEeCCccc
Q 014953 296 YDATKPIYTSRRNLPPSKI-DDSKIV----DSIISHGSFIT-SSFIE------HSVVGIRSRINANVHLKDTMMLGADFY 363 (415)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~i-~~~~i~----~~~ig~~~~I~-~~~i~------~svig~~~~ig~~~~i~~sii~~~~~~ 363 (415)
+.+.+.+...+.++.++.| +++.|. ++.||++|.|+ ++.|. +++||++|.||+++.|.+++|++++.|
T Consensus 42 I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~i~IG~~~~I~~~~~I~~~~~~g~~~Ig~~~~Ig~~~~i~~~~Ig~~~~I 121 (191)
T 3ixc_A 42 IAGNARIIGDVCIGKNASIWYGTVLRGDVDKIEVGEGTNIQDNTVVHTDSMHGDTVIGKFVTIGHSCILHACTLGNNAFV 121 (191)
T ss_dssp ECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEECC----CCEEECTTCEECTTCEECSCEECTTCEE
T ss_pred ECCCCEEeCCcEECCCCEECCCCEEecCCCCeEECCCCEECCCCEEeecCCcCCeEECCCCEECCCCEEECCEECCCCEE
Confidence 3344444444555566666 556664 34889999999 68887 899999999999999999999999988
Q ss_pred cchhHHHhhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCccc
Q 014953 364 ETDAEVASLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYD 405 (415)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~ 405 (415)
+.++.+.. + +.||++|.|. +++|.++..|++++..
T Consensus 122 g~~~~I~~----~---~~Ig~~~~Ig~gsvV~~~~~i~~~~~v 157 (191)
T 3ixc_A 122 GMGSIVMD----R---AVMEEGSMLAAGSLLTRGKIVKSGELW 157 (191)
T ss_dssp CTTCEECT----T---CEECTTCEECTTCEECTTCEECTTEEE
T ss_pred CCCCEEeC----C---eEECCCCEECCCCEECCCcCcCCCeEE
Confidence 88765432 2 5666666666 6666666666666543
|
| >3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.2e-09 Score=101.36 Aligned_cols=73 Identities=15% Similarity=0.199 Sum_probs=46.6
Q ss_pred CCCCCccccCccCCCeeecCCcc-ccceECCCCEEc-ceEEe-eeEEccCcEECCCcEEee---------cEEeCCcccc
Q 014953 297 DATKPIYTSRRNLPPSKIDDSKI-VDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKD---------TMMLGADFYE 364 (415)
Q Consensus 297 ~~~~~~~~~~~i~~~~~i~~~~i-~~~~ig~~~~I~-~~~i~-~svig~~~~ig~~~~i~~---------sii~~~~~~~ 364 (415)
.+.+.+..++.|++++.|....+ .++.||++|.|. ++.|. ++.||++|.|++++.|.+ ++|++++.|+
T Consensus 133 ~p~a~I~~~v~Ig~g~~I~~~~I~~~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~~~~~~~~~~~v~IGd~v~IG 212 (304)
T 3eg4_A 133 VPNCIVRHSAYIAPNAILMPSFVNLGAYVDKGAMIDTWATVGSCAQIGKNVHLSGGVGIGGVLEPMQAGPTIIEDNCFIG 212 (304)
T ss_dssp CTTCEEBTTCEECTTCEECSEEECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTCCCCEECTTCEEC
T ss_pred cCCEEECCCcEECCCCEEeCCEECCCCEECCCcEEcCCcEECCCCccCCCcEECCCCEECCccccCccCCeEEcCCCEEC
Confidence 34445555555666666522122 367777777777 46664 478888888888888877 7788886565
Q ss_pred chhHH
Q 014953 365 TDAEV 369 (415)
Q Consensus 365 ~~~~~ 369 (415)
.++.+
T Consensus 213 ~~a~I 217 (304)
T 3eg4_A 213 ARSEV 217 (304)
T ss_dssp TTCEE
T ss_pred CCCEE
Confidence 55433
|
| >3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A | Back alignment and structure |
|---|
Probab=98.96 E-value=1.4e-09 Score=99.84 Aligned_cols=68 Identities=7% Similarity=0.187 Sum_probs=43.1
Q ss_pred CCCCccccCccCCCeee-cCCcc-ccceECCCCEEc-ceEEee-eEEccCcEECCCcEEee---------cEEeCCcccc
Q 014953 298 ATKPIYTSRRNLPPSKI-DDSKI-VDSIISHGSFIT-SSFIEH-SVVGIRSRINANVHLKD---------TMMLGADFYE 364 (415)
Q Consensus 298 ~~~~~~~~~~i~~~~~i-~~~~i-~~~~ig~~~~I~-~~~i~~-svig~~~~ig~~~~i~~---------sii~~~~~~~ 364 (415)
+.+.+..++.+++++.| ++ .+ .++.||++|.|+ ++.|.+ +.||++|.|++++.|.+ ++|++++.|+
T Consensus 109 p~a~I~~~~~Ig~g~~I~~~-~i~~~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~g~~~~~~~~~v~IGd~v~IG 187 (276)
T 3gos_A 109 PPATVRKGAFIARNTVLMPS-YVNIGAFVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFVG 187 (276)
T ss_dssp TTCEEBTTCEECTTCEECSE-EECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTSCCCEECTTCEEC
T ss_pred CCcEECCCCEECCCCEEcCC-EEcCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCccccCCCCCeEECCCCEEC
Confidence 34444555555555555 22 22 267788888887 577754 88888888888888753 6777774444
Q ss_pred ch
Q 014953 365 TD 366 (415)
Q Consensus 365 ~~ 366 (415)
.+
T Consensus 188 ~~ 189 (276)
T 3gos_A 188 AR 189 (276)
T ss_dssp TT
T ss_pred CC
Confidence 44
|
| >1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A | Back alignment and structure |
|---|
Probab=98.95 E-value=3.4e-09 Score=90.38 Aligned_cols=90 Identities=16% Similarity=0.132 Sum_probs=60.4
Q ss_pred ccCCCeee-cCCcc-ccceECCCCEEc-ceEEee----eEEccCcEECCCcEEe-----ecEEeCCccccchhHHHhhhh
Q 014953 307 RNLPPSKI-DDSKI-VDSIISHGSFIT-SSFIEH----SVVGIRSRINANVHLK-----DTMMLGADFYETDAEVASLLA 374 (415)
Q Consensus 307 ~i~~~~~i-~~~~i-~~~~ig~~~~I~-~~~i~~----svig~~~~ig~~~~i~-----~sii~~~~~~~~~~~~~~~~~ 374 (415)
.+++++.+ +++.+ .++.||++|.|+ ++.|.. ++||++|.|++++.|. +++|++++.|+.++.+.
T Consensus 14 ~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~---- 89 (173)
T 1xhd_A 14 KIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILH---- 89 (173)
T ss_dssp EECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEEE----
T ss_pred EECCCcEECCCCEEECCEEECCCcEEcCCcEEecCCCeEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCCEEe----
Confidence 34444444 34444 477888888888 677754 8999999999999998 79999995555544332
Q ss_pred CCCcceEeCCCCEEe-eeEECCCeEEcCCcc
Q 014953 375 EGRVPVGIGENTKIK-YEQLKPICHIVETKY 404 (415)
Q Consensus 375 ~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~ 404 (415)
+ +.||++|.|. +++|.++++|++++.
T Consensus 90 -~---~~Ig~~~~Ig~~~~i~~~~~Ig~~~~ 116 (173)
T 1xhd_A 90 -S---CHIKKDALIGMGSIILDGAEIGEGAF 116 (173)
T ss_dssp -S---CEECTTCEECTTCEECTTCEECTTCE
T ss_pred -C---CEECCCCEEcCCCEEcCCCEECCCCE
Confidence 1 4556666665 566666666665553
|
| >3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.4e-09 Score=101.09 Aligned_cols=68 Identities=6% Similarity=0.096 Sum_probs=36.3
Q ss_pred CCCccccCccCCCeee-cCCccccceECCCCEEc-ceEE-eeeEEccCcEECCCcEEee---------cEEeCCccccch
Q 014953 299 TKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKD---------TMMLGADFYETD 366 (415)
Q Consensus 299 ~~~~~~~~~i~~~~~i-~~~~i~~~~ig~~~~I~-~~~i-~~svig~~~~ig~~~~i~~---------sii~~~~~~~~~ 366 (415)
...+..++.|++++.| ++....++.||++|.|. +++| .++.||++|.|++++.|.+ ++|++++.|+.+
T Consensus 151 ~a~I~~~~~IG~g~~I~~~~I~~g~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~I~~~~~~~~~~~v~IGd~v~IG~~ 230 (316)
T 3tk8_A 151 PAIARRGSFIAKNVVLMPSYTNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGAR 230 (316)
T ss_dssp TCEEBTTCEECTTCEECSEEECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTSCCCEECTTCEECTT
T ss_pred CeEEeCCcEEcCCCEECCCEEeCCCEECCCCEEccceEECCCCEECCCCEEcCCCEECCCcccccCCCcEECCCCEECCC
Confidence 3344444444444444 22111255666666666 3555 3466677777776666665 566666444433
|
| >3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.4e-09 Score=100.03 Aligned_cols=35 Identities=3% Similarity=-0.033 Sum_probs=27.2
Q ss_pred eEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 380 VGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 380 ~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
|.||.++.|. ++.||+++.|++++.+.+.+.++++
T Consensus 177 ~~IG~~~~I~~g~~IG~~~~IgagsvV~~dvp~~~~ 212 (273)
T 3fs8_A 177 AVIAARSVVLPGIHINEDALVGAGAVVTKDVPKETV 212 (273)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEECSCBCTTEE
T ss_pred eEEcCCCEEcCCCEECCCCEECCCCEECccCCCCcE
Confidence 6666677776 7888888888888888888877764
|
| >2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2.5e-09 Score=94.58 Aligned_cols=88 Identities=9% Similarity=-0.005 Sum_probs=52.7
Q ss_pred ceECCCCEEcceEE-----eeeEEccCcEECCCcEEeecE----EeCCccccchh--HHHhhhhCCCcceEeCCCCEEe-
Q 014953 322 SIISHGSFITSSFI-----EHSVVGIRSRINANVHLKDTM----MLGADFYETDA--EVASLLAEGRVPVGIGENTKIK- 389 (415)
Q Consensus 322 ~~ig~~~~I~~~~i-----~~svig~~~~ig~~~~i~~si----i~~~~~~~~~~--~~~~~~~~~~~~~~Ig~~~~i~- 389 (415)
+.||++|.|+.+.+ .+++||++|.|++++.|.++- .... .+... .-...|+++ |.||.+|.|.
T Consensus 80 ~~IG~~~~Ig~~~ii~~~~~~i~IG~~~~Ig~~~~I~~~~~h~~~~~~--~~~~~~~~~~v~Igd~---v~IG~~~~I~~ 154 (215)
T 2wlg_A 80 LQIQAKTTMGNGEITIAEKGKISIGKDCMLAHGYEIRNTDMHPIYSLE--NGERINHGKDVIIGNH---VWLGRNVTILK 154 (215)
T ss_dssp EEECTTCEECSEEEEECTTCEEEECTTCEECTTEEEESCCSSCEEETT--TCBBCCCCCCEEECTT---CEECTTCEECT
T ss_pred EEEcCCCEECCEEEEEeCCCCEEECCCCEEcCCEEEECCCCccccccc--ccccccCCCCeEECCC---cEECCCCEECC
Confidence 66677777764333 456677777777777766540 0000 00000 000123333 7888888887
Q ss_pred eeEECCCeEEcCCcccCcccccccc
Q 014953 390 YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 390 ~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
++.||+++.|++++.+.+.+-+++.
T Consensus 155 gv~Ig~~~vIgagsvV~~~vp~~~i 179 (215)
T 2wlg_A 155 GVCIPNNVVVGSHTVLYKSFKEPNC 179 (215)
T ss_dssp TCEECSSCEECTTCEECSCCCCCSC
T ss_pred CCEECCCCEECCCCEEcCccCCCeE
Confidence 8899999999999988877766654
|
| >3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A | Back alignment and structure |
|---|
Probab=98.90 E-value=5.7e-09 Score=90.16 Aligned_cols=92 Identities=14% Similarity=0.008 Sum_probs=55.9
Q ss_pred CCccccCccCCCeeecCCccccceECCCCEEc-ceEEe----eeEEccCcEECCCcEE------------eecEEeCCcc
Q 014953 300 KPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE----HSVVGIRSRINANVHL------------KDTMMLGADF 362 (415)
Q Consensus 300 ~~~~~~~~i~~~~~i~~~~i~~~~ig~~~~I~-~~~i~----~svig~~~~ig~~~~i------------~~sii~~~~~ 362 (415)
..+..++.+.+++.+. .++.||++|.|+ ++.|. ++.||++|.|++++.| .+++|++++.
T Consensus 16 ~~ig~~~~I~~~~~i~----~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~ 91 (187)
T 3r3r_A 16 PGIGQRVMIDTSSVVI----GDVRLADDVGIWPLVVIRGDVNYVAIGARTNIQDGSVLHVTHKSSSNPHGNPLIIGEDVT 91 (187)
T ss_dssp CEECTTCEECTTCEEE----EEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCBTTBC-CBCEEECSSCE
T ss_pred cccCCCeEECCCCEEE----CceEECCCCEECCCcEEEcCCccEEECCCCEECCCCEEecCCccccCCCCCCeEECCCCE
Confidence 4444555555555552 367777777777 56664 3599999999999999 6788888844
Q ss_pred ccchhHHHhhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCc
Q 014953 363 YETDAEVASLLAEGRVPVGIGENTKIK-YEQLKPICHIVETK 403 (415)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~ 403 (415)
|+.++.+. + +.||++|.|. +|+|.++++|++++
T Consensus 92 Ig~~~~i~-----~---~~Ig~~~~Ig~~~~I~~~~~Ig~~~ 125 (187)
T 3r3r_A 92 VGHKVMLH-----G---CTIGNRVLVGMGSIVLDGAIIEDDV 125 (187)
T ss_dssp ECTTCEEE-----S---CEECSSEEECTTCEECTTCEECSSE
T ss_pred ECCCCEEe-----C---cEECCCCEECCCCEECCCCEECCCC
Confidence 44433331 1 3444444444 44444444444444
|
| >3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=2.8e-09 Score=95.97 Aligned_cols=84 Identities=17% Similarity=0.108 Sum_probs=39.9
Q ss_pred cceECCCCEEc-ceEE-eeeEEccCcEECCCcEEe-ecEEeCCccccchhHHHhhhhCC-CcceEeCCCCEEe-eeEECC
Q 014953 321 DSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLK-DTMMLGADFYETDAEVASLLAEG-RVPVGIGENTKIK-YEQLKP 395 (415)
Q Consensus 321 ~~~ig~~~~I~-~~~i-~~svig~~~~ig~~~~i~-~sii~~~~~~~~~~~~~~~~~~~-~~~~~Ig~~~~i~-~~~i~~ 395 (415)
++.||++|+|+ ++.| .+++||++|.|+.++.|. +++|+++++|+.++.+....... ..++.||++|.|. +|+|.+
T Consensus 103 ~v~Ig~~~~I~~~s~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~~~~~Ig~~~~IG~~~~I~~ 182 (240)
T 3r8y_A 103 HVEIGDNAVIMMNATINIGAVIGEGSMIDMNAVLGGRATVGKNCHVGAGAVLAGVIEPPSAKPVIVEDDVVIGANVVVLE 182 (240)
T ss_dssp SCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECCCCSCTTSCCCEECTTCEECTTCEECT
T ss_pred CcEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCCccCCCCCCcEECCCCEECCCCEECC
Confidence 45555555554 3444 345555555555555554 45555555554444432211000 0124555555554 555555
Q ss_pred CeEEcCCcc
Q 014953 396 ICHIVETKY 404 (415)
Q Consensus 396 ~~~i~~~~~ 404 (415)
+++|++++.
T Consensus 183 ~~~Ig~~~~ 191 (240)
T 3r8y_A 183 GVTVGKGAV 191 (240)
T ss_dssp TCEECTTCE
T ss_pred CcEECCCCE
Confidence 555555543
|
| >2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A | Back alignment and structure |
|---|
Probab=98.89 E-value=2.3e-09 Score=97.96 Aligned_cols=54 Identities=19% Similarity=0.216 Sum_probs=38.4
Q ss_pred CCccc-cceECCCCEEc-ceEEe-------------eeEEccCcEECCCcEEee--------cEEeCCccccchhHH
Q 014953 316 DSKIV-DSIISHGSFIT-SSFIE-------------HSVVGIRSRINANVHLKD--------TMMLGADFYETDAEV 369 (415)
Q Consensus 316 ~~~i~-~~~ig~~~~I~-~~~i~-------------~svig~~~~ig~~~~i~~--------sii~~~~~~~~~~~~ 369 (415)
++.|. ++.||++|.|+ ++.|. +++||++|.|++++.|.. ++|++++.+..++.+
T Consensus 47 ~~~I~~~~~IG~~~~I~~~~~I~~~~~~~~~~g~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~Ig~~~~I 123 (262)
T 2qia_A 47 HVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRESVTIHRGTVQGGGLTKVGSDNLLMINAHI 123 (262)
T ss_dssp SCEECSEEEECSSCEECTTCEEEECCSCTTCCSCCCEEEECSSCEECTTCEEECCCTTTTSEEEECSSCEECTTCEE
T ss_pred CCEECCCcEECCCCEEecceEECcCCccccccCCccceEECCCceeCCCCEEcCCccCCCCcCEECCCcEEeeeeEE
Confidence 44443 67788888888 57774 688888888888888864 666766666665544
|
| >3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.88 E-value=2.7e-09 Score=101.09 Aligned_cols=16 Identities=25% Similarity=0.422 Sum_probs=9.9
Q ss_pred eeEEccCcEECCCcEE
Q 014953 337 HSVVGIRSRINANVHL 352 (415)
Q Consensus 337 ~svig~~~~ig~~~~i 352 (415)
+++||++|.||+++.|
T Consensus 200 ~v~IGd~v~Ig~~~~I 215 (341)
T 3eh0_A 200 RVIIGDRVEIGACTTI 215 (341)
T ss_dssp CEEECSSCEECTTCEE
T ss_pred cEEECCCcEECCccEe
Confidence 3566666666666666
|
| >3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.88 E-value=3.3e-09 Score=101.55 Aligned_cols=20 Identities=5% Similarity=-0.019 Sum_probs=10.6
Q ss_pred eeEECCCeEEcCCcccCccc
Q 014953 390 YEQLKPICHIVETKYDSSTI 409 (415)
Q Consensus 390 ~~~i~~~~~i~~~~~~~~~~ 409 (415)
++.|++++.|+.++.+.+.+
T Consensus 298 ~v~Ig~~~vI~a~s~V~k~v 317 (372)
T 3pmo_A 298 HIEICDNVFVTGMTMVTRSI 317 (372)
T ss_dssp SCEECSSEEECTTCEECSCB
T ss_pred CCEECCCCEEeeCCEEccCc
Confidence 34455555555555555555
|
| >3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A | Back alignment and structure |
|---|
Probab=98.88 E-value=1.6e-09 Score=99.32 Aligned_cols=70 Identities=7% Similarity=-0.027 Sum_probs=41.5
Q ss_pred cCCCCCccccCccCCCeee-cCCccc-cceECCCCEEc-ceEEeeeEEccCcEECCCcEEee---------cEEeCCccc
Q 014953 296 YDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKD---------TMMLGADFY 363 (415)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~---------sii~~~~~~ 363 (415)
++|.+.+..++.|++++.| +++.|. ++.||.+|+|. ++.+ .++||++|.|++++.|.+ .+|++++.|
T Consensus 187 I~P~AvI~~GA~IGeGv~Igp~a~Vn~na~IGdg~iI~~~a~i-gv~IGdnv~IgpGa~IgG~~~~~~~~~V~IGdnv~I 265 (347)
T 3r5d_A 187 IADTARVRLGAYIGEGTTVMHEGFVNFNAGTEGPGMIEGRVSA-GVFVGKGSDLGGGCSTMGTLSGGGNIVISVGEGCLI 265 (347)
T ss_dssp ESSGGGBBTTEEECTTEEECTTCEECTTEEESSSEEECSEECT-TCEECTTEEECTTCEECC------CCCCEECTTCEE
T ss_pred ECCcCEECCCCEECCCCEECCCCEECCCCEECCCcEEcCCceE-eEEECCCCEECCCCEEccccCCCCccceEECCCCEE
Confidence 3444444444555555555 333332 56666666665 2333 488999999999988876 577777433
Q ss_pred cch
Q 014953 364 ETD 366 (415)
Q Consensus 364 ~~~ 366 (415)
+.+
T Consensus 266 GAn 268 (347)
T 3r5d_A 266 GAN 268 (347)
T ss_dssp CTT
T ss_pred CCC
Confidence 333
|
| >1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A | Back alignment and structure |
|---|
Probab=98.88 E-value=9e-09 Score=87.75 Aligned_cols=91 Identities=18% Similarity=0.087 Sum_probs=55.5
Q ss_pred CccccCccCCCeeecCCccccceECCCCEEc-ceEEee----eEEccCcEECCCcEEe-----ecEEeCCccccchhHHH
Q 014953 301 PIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEH----SVVGIRSRINANVHLK-----DTMMLGADFYETDAEVA 370 (415)
Q Consensus 301 ~~~~~~~i~~~~~i~~~~i~~~~ig~~~~I~-~~~i~~----svig~~~~ig~~~~i~-----~sii~~~~~~~~~~~~~ 370 (415)
.+.+++.+.+++.+. .++.||++|.|+ ++.|.. ++||++|.|++++.|. +++|++++.|..++.+.
T Consensus 12 ~i~~~~~I~~~a~i~----g~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~ 87 (173)
T 1v3w_A 12 RIHPSAFVDENAVVI----GDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVH 87 (173)
T ss_dssp EECTTCEECTTSEEE----EEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEE
T ss_pred EECCCCEECCCCEEe----CCEEECCCCEECCCeEEecCCceEEECCCCEECCCcEEEecCCCCeEECCCCEECCCCEEC
Confidence 344444455555442 367788888887 576653 8999999999999998 58888884444433331
Q ss_pred hhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCc
Q 014953 371 SLLAEGRVPVGIGENTKIK-YEQLKPICHIVETK 403 (415)
Q Consensus 371 ~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~ 403 (415)
+ +.||++|.|. +++|.++++|++++
T Consensus 88 -----~---~~Ig~~~~Ig~~~~i~~~~~Ig~~~ 113 (173)
T 1v3w_A 88 -----G---AKVGNYVIIGISSVILDGAKIGDHV 113 (173)
T ss_dssp -----S---CEECSSEEECTTCEECTTCEECSSE
T ss_pred -----C---CEECCCCEECCCCEEeCCCEECCCC
Confidence 1 3444444444 44444444444444
|
| >3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=6.9e-09 Score=89.69 Aligned_cols=89 Identities=12% Similarity=0.037 Sum_probs=64.2
Q ss_pred cCccCCCeeecCCccccceECCCCEEc-ceEEee---eEEccCcEECCCcEEe-------------------ecEEeCCc
Q 014953 305 SRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEH---SVVGIRSRINANVHLK-------------------DTMMLGAD 361 (415)
Q Consensus 305 ~~~i~~~~~i~~~~i~~~~ig~~~~I~-~~~i~~---svig~~~~ig~~~~i~-------------------~sii~~~~ 361 (415)
.+.+.++.++.-. .++.||+++.|+ ++.|.+ ..||++|.||+++.|. +++|+++
T Consensus 62 ~~~I~~~~~~~~g--~~~~IG~~~~i~~~~~i~~~~~i~IG~~~~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG~~- 138 (188)
T 3srt_A 62 QINVEQNIRCDYG--YNIHVGENFFANYDCIFLDVCKIEIGDNVMLAPNVQIYTAYHPIDAQLRNSGIEYGSPVKIGDN- 138 (188)
T ss_dssp CEEECSCEEESSS--TTEEECTTEEECTTEEEECSSCEEECSSCEECTTCEEECEECCSSHHHHHTTEEEECCEEECSS-
T ss_pred CCEEcCCEEEEeC--CCeEECCcccccCceEEecCCceEECCeeEECCCcEEeeCCccCchhhccccceECCCcEECCC-
Confidence 4445555555100 366777777777 566643 3899999999999993 3445555
Q ss_pred cccchhHHHhhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 362 FYETDAEVASLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
|.||.||.|. ++.||+++.|++++.+.+.+-.++.
T Consensus 139 ------------------v~IG~~~~I~~gv~IG~~~vIgagsvV~~dvp~~~v 174 (188)
T 3srt_A 139 ------------------VWIGGGVIITPGITIGDNVVIGAGSVVTKDIPPNTV 174 (188)
T ss_dssp ------------------CEECTTCEECTTCEECSSEEECTTCEECSCBCSSEE
T ss_pred ------------------cEEcCCCEECCCcEECCCCEECCCCEECcccCCCCE
Confidence 8899999987 8999999999999988887766653
|
| >3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A | Back alignment and structure |
|---|
Probab=98.86 E-value=3.2e-09 Score=98.30 Aligned_cols=74 Identities=14% Similarity=0.137 Sum_probs=51.3
Q ss_pred eEEccCcEECCCcEEee-cEEeCCccccchhHHHhhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 338 SVVGIRSRINANVHLKD-TMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 338 svig~~~~ig~~~~i~~-sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
++||++|.|++++.|.+ +.+++++.+..++.....|+++ |.||.||.|. +++||+++.|++++.+.+.+..++.
T Consensus 190 ~~IG~~v~I~~~vtIG~~~~ig~~~~i~~~~~~~~~IGd~---v~IGaga~Ilggv~IG~~a~IGagsvV~~dVp~gs~ 265 (313)
T 3q1x_A 190 AIIGEWCRIYQSVTLGAMHFQEEGGVIKRGTKRHPTVGDY---VTIGTGAKVLGNIIVGSHVRIGANCWIDRDVDSNQT 265 (313)
T ss_dssp CEECSSCEECTTCEEECCCCCCTTCCCCCCSSCSCEECSS---CEECTTCEEESSCEECSSEEECTTCEECSCBCSSEE
T ss_pred cEECCCCEECCCcEEeCCcEECCCceEcCCCccCCEECCC---CEECCCCEECCCcEECCCCEECCCCEECCCcCCCCE
Confidence 45555555555555543 4444555555544444466666 9999999997 8999999999999999888877764
|
| >3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=8.2e-09 Score=89.73 Aligned_cols=91 Identities=13% Similarity=0.120 Sum_probs=59.3
Q ss_pred cceECCCCEEc-ceEEe---eeEEccCcEECCCcEEeecEE-eCCccccchhHHH--hhhhCCCcceEeCCCCEEe-eeE
Q 014953 321 DSIISHGSFIT-SSFIE---HSVVGIRSRINANVHLKDTMM-LGADFYETDAEVA--SLLAEGRVPVGIGENTKIK-YEQ 392 (415)
Q Consensus 321 ~~~ig~~~~I~-~~~i~---~svig~~~~ig~~~~i~~sii-~~~~~~~~~~~~~--~~~~~~~~~~~Ig~~~~i~-~~~ 392 (415)
++.||++|.|+ ++.|. ..+||++|.||+++.|..+.- .+......+..+. ..|+++ |.||.||.|. ++.
T Consensus 76 ~v~IG~~~~I~~~~~i~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~---v~IG~~~~I~~gv~ 152 (195)
T 3nz2_A 76 TIRIGDHTFINMNVVMLDGAPITIGDHVLIGPSTQFYTASHSLDYRRRQAWETICKPIVIEDD---VWIGGNVVINQGVT 152 (195)
T ss_dssp TEEECTTCEECTTEEEECSSCEEECTTCEECTTCEEECEECCSSGGGTTTCCCEECCEEECTT---CEECTTCEECTTCE
T ss_pred CeEECCCcEECcCCEEecCceEEECCCCEECCCCEEecCCCCcccccccccceecCCeEECCC---CEEcCCCEECCCCE
Confidence 56677777776 56663 348999999999998876421 1110011111110 133333 8888888887 899
Q ss_pred ECCCeEEcCCcccCcccccccc
Q 014953 393 LKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 393 i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
||+++.|++++.+.+.+-.++.
T Consensus 153 IG~~~vIgagsvV~~dvp~~~v 174 (195)
T 3nz2_A 153 IGARSVVAANSVVNQDVPPDTL 174 (195)
T ss_dssp ECTTCEECTTCEECSCBCSSEE
T ss_pred ECCCCEECCCCEEccccCCCcE
Confidence 9999999999988888776654
|
| >3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=4.8e-09 Score=91.03 Aligned_cols=24 Identities=4% Similarity=-0.147 Sum_probs=11.6
Q ss_pred eEeCCCCEEe-eeEECCCeEEcCCc
Q 014953 380 VGIGENTKIK-YEQLKPICHIVETK 403 (415)
Q Consensus 380 ~~Ig~~~~i~-~~~i~~~~~i~~~~ 403 (415)
+.||++|.|. +|+|.++++|++++
T Consensus 103 ~~Ig~~v~IG~~~~I~~g~~Ig~~~ 127 (192)
T 3mqg_A 103 TIVRQGATLGANCTVVCGATIGRYA 127 (192)
T ss_dssp EEECTTCEECTTCEECTTCEECTTC
T ss_pred cEECCCcEECCCCEECCCCEECCCC
Confidence 3444444444 44444444444444
|
| >3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
Probab=98.85 E-value=5e-09 Score=103.03 Aligned_cols=81 Identities=11% Similarity=0.163 Sum_probs=59.0
Q ss_pred CccCCCeee-cCCcc-ccceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEe
Q 014953 306 RRNLPPSKI-DDSKI-VDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGI 382 (415)
Q Consensus 306 ~~i~~~~~i-~~~~i-~~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~I 382 (415)
..+.+++++ +++.+ .++.||++|.|+ ++.|.+++||++|.|+++|.|.+|+|+++ |.|
T Consensus 274 ~~I~~~a~I~p~a~i~g~v~IG~~~~I~~~a~I~~v~IG~~~~I~~~~~I~~~vIG~~-------------------~~I 334 (496)
T 3c8v_A 274 AGSASGASVSGYAVIKGDTVIGENVLVSQRAYLDNAWMGKGSNAQENCYIINSRLERN-------------------CVT 334 (496)
T ss_dssp --CCTTCEECTTSEEESSCEECTTCEECTTCEEEEEEECTTCEECTTCEEEEEEEEES-------------------CEE
T ss_pred cccCCCcEECCCcEEeCCeEECCCCEECCCcEEeceEecCCCEECCCceEeceEeCCC-------------------CEE
Confidence 445566666 55555 378999999998 68889999999999999999999999999 455
Q ss_pred CCCCEEeeeEECCCeEEcCCccc
Q 014953 383 GENTKIKYEQLKPICHIVETKYD 405 (415)
Q Consensus 383 g~~~~i~~~~i~~~~~i~~~~~~ 405 (415)
|.+|.|.+|+||++|.||+++.+
T Consensus 335 g~~a~I~gv~IGd~v~IG~~a~I 357 (496)
T 3c8v_A 335 AHGGKIINAHLGDMIFTGFNSFL 357 (496)
T ss_dssp CTTCEEESEEEEETCEECTTCEE
T ss_pred CCCcEEcCceECCCcEECCCCEE
Confidence 55555555555555555555443
|
| >3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=4.7e-09 Score=92.16 Aligned_cols=96 Identities=13% Similarity=0.004 Sum_probs=66.3
Q ss_pred ccCCCCCccc--cCccCCCeee-cCCccc-cceECCCCEEc-ceEE----eeeEEccCcEECCCcEE-------------
Q 014953 295 FYDATKPIYT--SRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFI----EHSVVGIRSRINANVHL------------- 352 (415)
Q Consensus 295 ~~~~~~~~~~--~~~i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i----~~svig~~~~ig~~~~i------------- 352 (415)
.+.+...+.. ...++.++.| +++.|. ++.||++|.|+ ++.| .+++||++|.|++++.|
T Consensus 40 ~I~~~~~i~~~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~~~~ 119 (205)
T 3vbi_A 40 LISKKASIYNPGVISIGNNVRIDDFCILSGKVTIGSYSHIAAYTALYGGEVGIEMYDFANISSRTIVYAAIDDFSGNALM 119 (205)
T ss_dssp EEBTTSEEESGGGEEECSSEEECTTCEEEEEEEECSSEEECTTCEEEEEEEEEEECTTCEECTTCEEESEECCCSSSSCC
T ss_pred EECCCeEEccCCeeEECCCCEECCCCEEccceEECCCCEECCCeEEEcCCccEEECCCCEECCCcEEEeCCCCccccccc
Confidence 3445555544 5667777777 667775 78899999999 6888 34999999999999999
Q ss_pred -------------eecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCc
Q 014953 353 -------------KDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-YEQLKPICHIVETK 403 (415)
Q Consensus 353 -------------~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~ 403 (415)
.+++|++++.|+.+ |.|.+++.|. +|+|+.++.|..+.
T Consensus 120 ~~~~~~~~~~~~~~~v~IG~~v~IG~~-------------~~I~~gv~Ig~~~~Ig~gsvV~~~v 171 (205)
T 3vbi_A 120 GPTIPNQYKNVKTGKVILKKHVIIGAH-------------SIIFPNVVIGEGVAVGAMSMVKESL 171 (205)
T ss_dssp STTSCGGGCCCEECCEEECTTCEECTT-------------CEECSSCEECTTCEECTTCEECSCB
T ss_pred CcccccccceeccCCEEECCCCEECCC-------------CEEcCCCEECCCCEEcCCCEECCcc
Confidence 44667777666655 5555555554 55555555555443
|
| >4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A | Back alignment and structure |
|---|
Probab=98.85 E-value=3.6e-09 Score=100.80 Aligned_cols=15 Identities=27% Similarity=0.512 Sum_probs=6.6
Q ss_pred eEEccCcEECCCcEE
Q 014953 338 SVVGIRSRINANVHL 352 (415)
Q Consensus 338 svig~~~~ig~~~~i 352 (415)
++||++|.||+++.|
T Consensus 206 v~IGd~v~IG~~~~I 220 (357)
T 4e79_A 206 VLIGNDVRIGSNCSI 220 (357)
T ss_dssp EEECTTCEECTTCEE
T ss_pred EEEcCCcEEccccEE
Confidence 344444444444444
|
| >3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=9.3e-09 Score=89.03 Aligned_cols=104 Identities=11% Similarity=0.054 Sum_probs=64.9
Q ss_pred cCccCCCeee-cCCccccceECCCCEEc-ceEEe---eeEEccCcEECCCcEEeecEEeCCc-cccchhHHH--hhhhCC
Q 014953 305 SRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIE---HSVVGIRSRINANVHLKDTMMLGAD-FYETDAEVA--SLLAEG 376 (415)
Q Consensus 305 ~~~i~~~~~i-~~~~i~~~~ig~~~~I~-~~~i~---~svig~~~~ig~~~~i~~sii~~~~-~~~~~~~~~--~~~~~~ 376 (415)
++.+.+++++ -+ .++.||++|.|+ ++.|. ...||++|.||+++.|..+....+. ....+.... ..|+++
T Consensus 64 ~~~I~~~~~~~~g---~~v~IG~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~ 140 (190)
T 3hjj_A 64 KAQINPDFRCDYG---YNIHVGKSFFANFNCVILDVCEVRIGDHCMFAPGVHIYTATHPLHPVERNSGKEYGKPVKIGNN 140 (190)
T ss_dssp CCEECSSCEESSS---TTEEECTTCEECTTCEEECSSCEEECTTCEECTTCEEECEECCSSHHHHTSSEEEECCEEECTT
T ss_pred CcEECCCEEEEeC---CceEECCceeeCCCeEEEeCCCeEECCceEEcCCcEEecCCccCchhhccccccccCCeEECCC
Confidence 3445555544 11 256666666666 45553 5689999999999999653211110 000000000 123333
Q ss_pred CcceEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 377 RVPVGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 377 ~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
|.||.+|.|. ++.||+++.|++++.+.+.+..++.
T Consensus 141 ---v~IG~~~~I~~gv~IG~~~vIgagsvV~~dvp~~~v 176 (190)
T 3hjj_A 141 ---VWVGGGAIINPGVSIGDNAVIASGAVVTKDVPNNVV 176 (190)
T ss_dssp ---CEECTTCEECTTCEECTTCEECTTCEECSCBCTTEE
T ss_pred ---CEECCCCEECCCCEECCCCEECCCCEECcccCCCCE
Confidence 8899999998 9999999999999998888877654
|
| >3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A | Back alignment and structure |
|---|
Probab=98.84 E-value=1.1e-08 Score=90.20 Aligned_cols=48 Identities=13% Similarity=0.034 Sum_probs=31.6
Q ss_pred ceECCCCEEc-ceEEee-eEEccCcEECCCcEEeecEEeCCccccchhHH
Q 014953 322 SIISHGSFIT-SSFIEH-SVVGIRSRINANVHLKDTMMLGADFYETDAEV 369 (415)
Q Consensus 322 ~~ig~~~~I~-~~~i~~-svig~~~~ig~~~~i~~sii~~~~~~~~~~~~ 369 (415)
+.||++|.|+ ++.|.. ++||++|.||+++.|.+++|+++++|+.++.+
T Consensus 112 ~~IG~~v~Ig~~~~I~~~v~Ig~~v~IG~~a~I~~~~Ig~~~~Igags~V 161 (213)
T 3kwd_A 112 VWIGDNVSITHMALIHGPAYIGDGCFIGFRSTVFNARVGAGCVVMMHVLI 161 (213)
T ss_dssp EEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEECTTCEECSSCEE
T ss_pred eEECCCcEECCCcEEcCCCEECCCCEECCCCEEeCcEECCCCEEcCCCEE
Confidence 5667777776 466654 77777777777777777667776666665433
|
| >3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.5e-08 Score=87.58 Aligned_cols=82 Identities=16% Similarity=0.061 Sum_probs=53.9
Q ss_pred CCccccCccCCCeeecCCccccceECCCCEEc-ceEEe----eeEEccCcEECCCcEEeec------------EEeCCcc
Q 014953 300 KPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIE----HSVVGIRSRINANVHLKDT------------MMLGADF 362 (415)
Q Consensus 300 ~~~~~~~~i~~~~~i~~~~i~~~~ig~~~~I~-~~~i~----~svig~~~~ig~~~~i~~s------------ii~~~~~ 362 (415)
..+..++.+.+++.+. .++.||++|.|+ ++.|. ++.||++|.|++++.|..+ +|+++
T Consensus 20 ~~ig~~~~I~~~~~i~----~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~-- 93 (189)
T 3r1w_A 20 PKLGERVFVDRSSVII----GDVELGDDCSVWPLAVIRGDMHHIRIGARTSVQDGSVLHITHASDYNPGGYPLIIGDD-- 93 (189)
T ss_dssp CEECTTCEECTTCEEE----EEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCSSSSTTCBCEEECSS--
T ss_pred CEECCCcEECCCCEEe----eeeEECCCCEECCCCEEecCCCceEECCCCEECCCCEEecCCcccCCCCCCCeEECCC--
Confidence 3444555555555552 367777777777 56663 4599999999999999876 88888
Q ss_pred ccchhHHHhhhhCCCcceEeCCCCEEeeeEECCCeEEcCCcc
Q 014953 363 YETDAEVASLLAEGRVPVGIGENTKIKYEQLKPICHIVETKY 404 (415)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~~i~~~~~i~~~~~ 404 (415)
|.||++|.|.+++||+++.|++++.
T Consensus 94 -----------------~~Ig~~~~i~~~~Ig~~~~Ig~~~~ 118 (189)
T 3r1w_A 94 -----------------VTIGHQAMLHGCTIGNRVLIGMKSM 118 (189)
T ss_dssp -----------------EEECTTCEEESCEECSSEEECTTCE
T ss_pred -----------------CEECCCCEEeCcEECCCcEECCCCE
Confidence 5555555555555555555555544
|
| >3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A | Back alignment and structure |
|---|
Probab=98.84 E-value=8.1e-09 Score=90.09 Aligned_cols=104 Identities=11% Similarity=0.048 Sum_probs=63.2
Q ss_pred cCccCCCeeec-CCccccceECCCCEEc-ceEEe---eeEEccCcEECCCcEEeecEEeCC-ccccchhHH--HhhhhCC
Q 014953 305 SRRNLPPSKID-DSKIVDSIISHGSFIT-SSFIE---HSVVGIRSRINANVHLKDTMMLGA-DFYETDAEV--ASLLAEG 376 (415)
Q Consensus 305 ~~~i~~~~~i~-~~~i~~~~ig~~~~I~-~~~i~---~svig~~~~ig~~~~i~~sii~~~-~~~~~~~~~--~~~~~~~ 376 (415)
++.+.++.++. + .++.||++|.|+ ++.|. ..+||++|.||++|.|..+.-... .....+... ...|+++
T Consensus 60 ~~~i~~~~~~~~g---~~~~IG~~~~I~~~~~i~~~~~v~IG~~v~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~ 136 (199)
T 3ftt_A 60 NVSISIPFDTDYG---WNVKLGKNVYVNTNCYFMDGGQITIGDNVFIGPNCGFYTATHPLNFHHRNEGFEKAGPIHIGSN 136 (199)
T ss_dssp SEEECSSEEESSS---TTEEECSSEEECTTEEEECSSCEEECSSEEECTTCEEECEECCSSHHHHHTTEEEECCEEECSS
T ss_pred CeEEeCCEEEEec---CCcEECCCeEECCCeEEecCCEEEECCCCEECCCCEEecCCCcCccccccccceecCCeEEcCC
Confidence 34455555541 1 356667777776 56663 359999999999999954320000 000000000 0012222
Q ss_pred CcceEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 377 RVPVGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 377 ~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
|.||.||.|. ++.||+++.|++++.+.+.+-.++.
T Consensus 137 ---v~IG~~~~I~~gv~IG~~~vIgagsvV~~dvp~~~v 172 (199)
T 3ftt_A 137 ---TWFGGHVAVLPGVTIGEGSVIGAGSVVTKDIPPHSL 172 (199)
T ss_dssp ---EEECTTCEECTTCEECTTCEECTTCEECSCBCTTEE
T ss_pred ---cEEcCCCEECCCCEECCCCEECCCCEECcccCCCCE
Confidence 8899999887 8999999999999988887766653
|
| >3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=5.5e-09 Score=95.07 Aligned_cols=47 Identities=19% Similarity=0.207 Sum_probs=30.4
Q ss_pred eEEccCcEECCCcEEee---------cEEeCCccccchhHHHhhhhCCCcceEeCCCCEEeeeEECCCeEEcCCcc
Q 014953 338 SVVGIRSRINANVHLKD---------TMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKYEQLKPICHIVETKY 404 (415)
Q Consensus 338 svig~~~~ig~~~~i~~---------sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~~i~~~~~i~~~~~ 404 (415)
+.||++|.|++++.|.+ ..|+++ |.||.||.| ++.||++|+|++|+.
T Consensus 208 v~IGd~v~IgpGa~IgG~~~~~~~~~V~IGDn-------------------v~IGanAtI-gVtIGd~~iIGAGSV 263 (332)
T 3fsy_A 208 VVVGDGSDVGGGASIMGTLSGGGTHVISIGKR-------------------CLLGANSGL-GISLGDDCVVEAGLY 263 (332)
T ss_dssp CEECTTCEECTTCEECSBCC---CCBCEECTT-------------------CEECTTCEE-CSCBCSSCEECTTCE
T ss_pred eEECCCCEECCCCEEcCCCCCCCccceEECCC-------------------CEECCCCEE-eeEECCCCEECCCCE
Confidence 67888888888887765 566666 566666665 555555555555553
|
| >2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=6.5e-09 Score=99.86 Aligned_cols=35 Identities=14% Similarity=0.079 Sum_probs=21.2
Q ss_pred eEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 380 VGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 380 ~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
|.||.++.|. ++.||+++.|++++.+.+.+-++++
T Consensus 293 ~~Ig~~~~i~~~v~Ig~~~~I~a~s~V~~~v~~~~~ 328 (374)
T 2iu8_A 293 VIIGGQAGITGHICIADHVIMMAQTGVTKSITSPGI 328 (374)
T ss_dssp CEECTTCEECSSCEECTTEEECTTCEECSCBCSCEE
T ss_pred eEEecCcEECCCcccCCCcEEccCceeecccCCCcE
Confidence 4444444444 5667777777777777766665543
|
| >2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.5e-08 Score=95.72 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=17.7
Q ss_pred eCceEEecCC--HHHHHHHHHhhc
Q 014953 266 FNDYWEDIGT--IRSFFEANLALT 287 (415)
Q Consensus 266 ~~g~~~di~t--~~~y~~an~~~l 287 (415)
...+|.+.+. |++|......+.
T Consensus 168 ~~~~Wt~~G~~~~~~f~~~~~~l~ 191 (387)
T 2rij_A 168 SNVAWSDDKPIELEYLRANEMRLK 191 (387)
T ss_dssp CCEEEETTEEECHHHHHHHHHHHH
T ss_pred ceeeeccCcccCHHHHHHHHHHHH
Confidence 4568999998 788888888776
|
| >4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A | Back alignment and structure |
|---|
Probab=98.78 E-value=9.9e-09 Score=91.03 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=30.6
Q ss_pred eEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 380 VGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 380 ~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
|.||.||.|. ++.||+++.|++++.+.+.+-+++.
T Consensus 126 v~IG~~a~I~~gv~IG~gavIgagsvV~~dVp~~~v 161 (220)
T 4hur_A 126 VWIGRDVTIMPGVKIGDGAIIAAEAVVTKNVAPYSI 161 (220)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEECSCBCTTEE
T ss_pred cEECCCCEEeCCCEECCCCEEcCCCEEcccCCCCcE
Confidence 8888888887 8999999999999998888877764
|
| >1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=2.4e-08 Score=86.96 Aligned_cols=105 Identities=15% Similarity=0.076 Sum_probs=65.5
Q ss_pred cCccCCCeeecCCccccceECCCCEEc-ceEEee---eEEccCcEECCCcEEeecEE-eCCccccchhHHH--hhhhCCC
Q 014953 305 SRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEH---SVVGIRSRINANVHLKDTMM-LGADFYETDAEVA--SLLAEGR 377 (415)
Q Consensus 305 ~~~i~~~~~i~~~~i~~~~ig~~~~I~-~~~i~~---svig~~~~ig~~~~i~~sii-~~~~~~~~~~~~~--~~~~~~~ 377 (415)
++.|.++.++.- -.++.||++|.|+ ++.|.+ ..||++|.||+++.|..+.- .+......+..+. ..|+++
T Consensus 61 ~~~I~~~~~~~~--g~~i~IG~~~~I~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IGd~- 137 (203)
T 1krr_A 61 NAWVEPPVYFSY--GSNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNN- 137 (203)
T ss_dssp SCEECSCEEESC--STTEEECSSCEECSCEEEECSSCEEECSSCEECSSCEEESEECCSSTTTCTTCCBEECCEEECTT-
T ss_pred CcEEcCCeEEEe--CCCeEECCeeEECCccEEecccceEECCCCEECCCCEEecCCcccchhhcccCceeCCCcEECCC-
Confidence 445555554310 1367788888887 566653 78999999999998864310 0111011111010 123333
Q ss_pred cceEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 378 VPVGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 378 ~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
|.||.||.|. ++.||+++.|++++.+.+.+-+++.
T Consensus 138 --v~IG~~a~I~~gv~IG~~~vIgagsvV~~dvp~~~v 173 (203)
T 1krr_A 138 --VWIGSHVVINPGVTIGDNSVIGAGSIVTKDIPPNVV 173 (203)
T ss_dssp --CEECTTCEECTTCEECTTCEECTTCEECSCBCTTEE
T ss_pred --eEECCCCEEeCCeEECCCCEECCCCEECCCcCCCcE
Confidence 7888888887 8888889999999888877766654
|
| >1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A | Back alignment and structure |
|---|
Probab=98.76 E-value=3.2e-08 Score=89.36 Aligned_cols=26 Identities=12% Similarity=0.068 Sum_probs=12.4
Q ss_pred eEeCCCCEEeeeEECCCeEEcCCccc
Q 014953 380 VGIGENTKIKYEQLKPICHIVETKYD 405 (415)
Q Consensus 380 ~~Ig~~~~i~~~~i~~~~~i~~~~~~ 405 (415)
|.||.||.|.++.||+++.|++++.+
T Consensus 165 v~IG~~a~I~~v~Ig~~~~IgagsvV 190 (247)
T 1qre_A 165 TFIGMQAFVFKSKVGNNCVLEPRSAA 190 (247)
T ss_dssp CEECTTCEEEEEEECTTCEECTTCEE
T ss_pred CEECCCCEEeceEECCCCEECCCCEE
Confidence 44444444444444444444444444
|
| >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.5e-08 Score=100.49 Aligned_cols=100 Identities=17% Similarity=0.187 Sum_probs=68.2
Q ss_pred cCccCCCeee-cCCccc-cceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHH--hhhhCCCc-
Q 014953 305 SRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVA--SLLAEGRV- 378 (415)
Q Consensus 305 ~~~i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~--~~~~~~~~- 378 (415)
.+.+++++.| +++.|. ++.||++|+|+ ++.|.+|.||++|.|+ ++.|.+++|++++.|++++.+. +.++++..
T Consensus 274 ~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~ig~~~~i~-~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~I 352 (468)
T 1hm9_A 274 DVEIAPEVQIEANVILKGQTKIGAETVLTNGTYVVDSTIGAGAVIT-NSMIEESSVADGVTVGPYAHIRPNSSLGAQVHI 352 (468)
T ss_dssp TCEECTTCEECSSCEEESSCEECTTCEECTTCEEESCEECTTCEEC-SCEEESCEECTTCEECSSCEECSSCEECTTCEE
T ss_pred CcEECCCCEECCCcEECCCCEECCCCEECCCCEEeccEEeCCcEEE-EEEEeccccCCCcEECCceEEecCcEECCccEE
Confidence 3445555555 455553 78899999998 6999999999999999 9999999999998888887664 34455410
Q ss_pred -------ceEeCCCCEEe------eeEECCCeEEcCCccc
Q 014953 379 -------PVGIGENTKIK------YEQLKPICHIVETKYD 405 (415)
Q Consensus 379 -------~~~Ig~~~~i~------~~~i~~~~~i~~~~~~ 405 (415)
++.||+++.+. +++||+++.|++++..
T Consensus 353 g~~~~i~~~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~i 392 (468)
T 1hm9_A 353 GNFVEVKGSSIGENTKAGHLTYIGNCEVGSNVNFGAGTIT 392 (468)
T ss_dssp EEEEEEESCEECTTCEEEEEEEEESEEECTTCEECTTCEE
T ss_pred CCCcEEeeeEEcCCcEeCCceEEccccccCCcEECCCcEE
Confidence 12233343332 2456666666666543
|
| >3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A | Back alignment and structure |
|---|
Probab=98.73 E-value=2e-07 Score=90.99 Aligned_cols=350 Identities=12% Similarity=0.109 Sum_probs=180.1
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeC-Ccceeehhehhhhhcc----CCc-EEEEEcc-cChhHHHHHHHhhcc
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIG-GAYRLIDVPMSNCINS----GIN-KVYILTQ-YNSASLNRHLARAYN 78 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~-g~~pli~~~l~~l~~~----gi~-~I~vv~~-~~~~~i~~~l~~~~~ 78 (415)
..++.+|+||||.||||+ ...||.++|+. |+ ++++++++++.+. |.. .++|-++ ..++...+++.+..-
T Consensus 125 l~kvavvlLaGGlGTRLG---~~~PK~~i~V~sgk-tflql~~eqI~~l~~~~g~~IPl~IMTS~~T~~~T~~~f~k~~~ 200 (528)
T 3r3i_A 125 LNKLVVVKLNGGLGTSMG---CKGPKSLIGVRNEN-TFLDLTVQQIEHLNKTYNTDVPLVLMNSFNTDEDTKKILQKYNH 200 (528)
T ss_dssp CTTEEEEEECCCBCTTTT---CSSBGGGSEEETTE-EHHHHHHHHHHHHHHHHTCCCCEEEEECTTTHHHHHSSCGGGTT
T ss_pred cCceEEEEeCCCCccccC---CCCCccceecCCCC-cHHHHHHHHHHHHHHHhCCCCCEEEEeccchhHHHHHHHHhcCc
Confidence 467899999999999997 78999999997 67 9999999998864 422 3455555 445778888776432
Q ss_pred CCCCcc-cCCceEEEecCccC-CC--------CCCC-ccccchHHHHHHhh--hhhcCCCCCCcCeEEEEcCCeec-ccC
Q 014953 79 YGSGVT-FGDGCVEVLAATQT-PG--------EAGK-RWFQGTADAVRQFH--WLFEDPRNKVIEDVLILSGDHLY-RMD 144 (415)
Q Consensus 79 ~~~~~~-~~~~~v~i~~~~~~-~~--------~~~~-~~~~Gt~~al~~~~--~~i~~~~~~~~~~~lv~~gD~i~-~~~ 144 (415)
++.... |....+..+..... .- .... -.+.|.|+-..... ..+++....+.+.+.+.+.|.+. ..|
T Consensus 201 fg~~V~~F~Q~~~P~i~~dg~l~l~~~~~~~~~~~~~~~P~GhGdiy~aL~~sGlLd~l~~~Gieyi~v~nvDNlga~vD 280 (528)
T 3r3i_A 201 CRVKIYTFNQSRYPRINKESLLPVAKDVSYSGENTEAWYPPGHGDIYASFYNSGLLDTFIGEGKEYIFVSNIDNLGATVD 280 (528)
T ss_dssp SSCCEEEEECCCBCCEETTTCCCC-------------CBCCBTTTHHHHHHHHSHHHHHHHTTCCEEEEEETTBTTCCCC
T ss_pred cCCCeEEEEeCCeeeEecCCceecccccccCCCcceeeCcCCChHHHHHHHHCChHHHHHhcCCEEEEEEccCCcccccC
Confidence 321110 00000000000000 00 0000 12345554332221 12222111246899999999954 344
Q ss_pred hHHHHHHHHHc----CCcEEEEEEEcCCCcCCcccEEEECCCCC--eEEEEEcCCccccccccccccccccccccccccc
Q 014953 145 YMDFVQNHRQS----GADITISCLPMDDSRASDFGLMKINNEGR--VLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKP 218 (415)
Q Consensus 145 l~~~l~~h~~~----~~~~ti~~~~~~~~~~~~~g~v~~d~~~~--v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (415)
..++.++..+ ++++.+-+.+...+ .+.-|+++. .+|+ ++++.+-|+.... ........
T Consensus 281 -p~~Lg~~~~~~~~~~~d~~~kVv~Kt~~-dek~Gvl~~-~dGk~~vvEyseip~e~~~-------------~~~g~~~f 344 (528)
T 3r3i_A 281 -LYILNHLMNPPNGKRCEFVMEVTNKTRA-DVKGGTLTQ-YEGKLRLVEIAQVPKAHVD-------------EFKSVSKF 344 (528)
T ss_dssp -HHHHHHHSSCSSSCCCSEEEEECCCCTT-CCSSCEEEC-SSSSCEEECTTSSCGGGTT-------------TSSCSSSC
T ss_pred -HHHHHHHHhcccccCCcEEEEEeEcccc-CCcccEEEE-ECCeEEEEEecCCChhHhh-------------ccCCcccC
Confidence 3467777666 78888766654432 233466654 3555 3333333322110 00111234
Q ss_pred ceeeeeEEEEeHHHHHHHHhhhCCCC------------------CcccccchhhhcccceEEEEEeC-ceEEecCCHHHH
Q 014953 219 YIASMGVYLFKKEILLNLLRWRFPTA------------------NDFGSEIIPASANEQFLKAYLFN-DYWEDIGTIRSF 279 (415)
Q Consensus 219 ~l~~~Giyi~~~~~l~~~l~~~~~~~------------------~~~~~~~l~~l~~~~~i~~~~~~-g~~~di~t~~~y 279 (415)
.+.++...+|+-++++++++...... +.+..++++.. .+..++.++ ..|..+.+..|+
T Consensus 345 ~~~Ntnnlw~~L~~L~~v~~~~~l~Lp~ivn~K~vd~~~~viqlEt~igd~i~~f---~~~~~i~VpR~rF~PvKn~sdL 421 (528)
T 3r3i_A 345 KIFNTNNLWISLAAVKRLQEQNAIDMEIIVNAKTLDGGLNVIQLETAVGAAIKSF---ENSLGINVPRSRFLPVKTTSDL 421 (528)
T ss_dssp CCCEEEEEEEEHHHHHHHHHTTCCCCCCEEEEECCSSSSCEEEEEBCSTTCSTTS---SSCCCEECCGGGCCBCCSHHHH
T ss_pred CeEEEEEEEEEHHHHHHHHHhCCCCCCceecCcccCCCCCEEEeHHHHHHHHHhc---cCcEEEEEehHHcccccchHHH
Confidence 56889999999999998887531110 00111122111 122334443 238899999999
Q ss_pred HHHHHhhcCCCCCCCccCCCCCc--cccCccCCCeeecCCccc--cceECC-CCEEcceEEeeeEEccCcEECCCcEEee
Q 014953 280 FEANLALTAHPPMFSFYDATKPI--YTSRRNLPPSKIDDSKIV--DSIISH-GSFITSSFIEHSVVGIRSRINANVHLKD 354 (415)
Q Consensus 280 ~~an~~~l~~~~~~~~~~~~~~~--~~~~~i~~~~~i~~~~i~--~~~ig~-~~~I~~~~i~~svig~~~~ig~~~~i~~ 354 (415)
+....++-......-...+.... .+...+++. -..+. ..-+.. -..++ ..+=.|--+|+-|+++++.+
T Consensus 422 ll~~Sdly~l~~g~l~~~~~r~~~~~P~v~L~~~----~~~v~~f~~rf~~iP~l~~---~~~LtV~Gdv~fg~~v~l~G 494 (528)
T 3r3i_A 422 LLVMSNLYSLNAGSLTMSEKREFPTVPLVKLGSS----FTKVQDYLRRFESIPDMLE---LDHLTVSGDVTFGKNVSLKG 494 (528)
T ss_dssp HHHHSTTSEEETTEEECCSSCSSCCCCEEEECTT----SCSHHHHHHHCSSCCEEEE---EEEEEEESEEECCTTCEEEE
T ss_pred HHHhcceeEeeCCeEEecccccCCCCCEEEeCcc----cCcHHHHHHhCCCCCCccc---CCEEEEecceEECCCcEEEE
Confidence 98876653221110011111100 011111111 11111 111211 11121 23445666788899999988
Q ss_pred cEEeCCccccchhHHHhhhhCCCcceEeCCCCEEeeeEECCCeEE
Q 014953 355 TMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKYEQLKPICHI 399 (415)
Q Consensus 355 sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~~i~~~~~i 399 (415)
.++.... +| .+..|-+|++++|.+|..+..|
T Consensus 495 ~v~i~~~-------------~g-~~~~ip~g~~len~~v~g~~~~ 525 (528)
T 3r3i_A 495 TVIIIAN-------------HG-DRIDIPPGAVLENKIVSGNLRI 525 (528)
T ss_dssp EEEEECC-------------TT-CEEECCTTCEEEEEEEC-----
T ss_pred EEEEEcC-------------CC-CceecCCCCEEeccEEeccccc
Confidence 7776331 01 1267999999999888876655
|
| >2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A | Back alignment and structure |
|---|
Probab=98.72 E-value=3.4e-08 Score=84.94 Aligned_cols=75 Identities=15% Similarity=0.148 Sum_probs=56.6
Q ss_pred cceECCCCEEc-ceEE---eeeEEccCcEECCCcEEee-------------------cEEeCCccccchhHHHhhhhCCC
Q 014953 321 DSIISHGSFIT-SSFI---EHSVVGIRSRINANVHLKD-------------------TMMLGADFYETDAEVASLLAEGR 377 (415)
Q Consensus 321 ~~~ig~~~~I~-~~~i---~~svig~~~~ig~~~~i~~-------------------sii~~~~~~~~~~~~~~~~~~~~ 377 (415)
++.||++|.|. ++.| .+..||++|.||+++.|.. +.|+++
T Consensus 74 ~v~IG~~~~i~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IGd~----------------- 136 (185)
T 2p2o_A 74 NIHVGENFFMNFDGVILDVCEVRIGDHCFIGPGVHIYTATHPLDPHERNSGLEYGKPVVIGHN----------------- 136 (185)
T ss_dssp TEEECTTEEECSSEEEECSSCEEECTTCEECTTCEEECEECCSSHHHHHTCCBEECCEEECSS-----------------
T ss_pred CEEECCeeEEcCCeEEEeccceEECCCcEEeCCCEEEcCCCcCChhhcccCccccCCeEEcCC-----------------
Confidence 56677777776 5665 3678999999999998853 344444
Q ss_pred cceEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 378 VPVGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 378 ~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
|.||.||.|. ++.||+++.|++++.+.+.|..++.
T Consensus 137 --v~IG~~~~I~~gv~IG~~~vIgagsvV~~~vp~~~v 172 (185)
T 2p2o_A 137 --VWIGGRAVINPGVTIGDNAVIASGAVVTKDVPANAV 172 (185)
T ss_dssp --CEECTTCEECTTCEECTTCEECTTCEECSCBCTTEE
T ss_pred --eEECCCCEECCCCEECCCCEECCCCEECCCCCCCcE
Confidence 8888888887 8888899999998888777766653
|
| >4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=1.1e-08 Score=101.25 Aligned_cols=81 Identities=22% Similarity=0.201 Sum_probs=60.4
Q ss_pred CccCCCeee-cCCcc-ccceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHH--hhhhCCCcce
Q 014953 306 RRNLPPSKI-DDSKI-VDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVA--SLLAEGRVPV 380 (415)
Q Consensus 306 ~~i~~~~~i-~~~~i-~~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~--~~~~~~~~~~ 380 (415)
+.+++++.| +++.| .++.||++|.|+ ++.|.+++||++|.|++++.|.+++|++++.|++++.+. +.++++ +
T Consensus 269 ~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~~~Ig~~~~ig~~~~i~~~~~ig~~---~ 345 (459)
T 4fce_A 269 LTHGRDITIDTNVIIEGHVILGDRVRIGTGCVLKNCVIGDDSEISPYTVLEDARLDANCTVGPFARLRPGAELAEG---A 345 (459)
T ss_dssp EEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECSSCEEESCEECTTCEECSSEEECTTCEECTT---C
T ss_pred EEECCCcEECCCeeeccceEECCCCEECCCCEEeccEECCCCEECCCcEEeCCEECCCCEECCccEECCCcEECCC---c
Confidence 445566666 55666 478899999998 788889999999999999999999999998888887664 344555 4
Q ss_pred EeCCCCEEe
Q 014953 381 GIGENTKIK 389 (415)
Q Consensus 381 ~Ig~~~~i~ 389 (415)
.||++|.|.
T Consensus 346 ~Ig~~~~i~ 354 (459)
T 4fce_A 346 HVGNFVEIK 354 (459)
T ss_dssp EEEEEEEEE
T ss_pred EECCCeEEe
Confidence 555544443
|
| >3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=98.72 E-value=2e-08 Score=92.67 Aligned_cols=35 Identities=11% Similarity=-0.034 Sum_probs=31.2
Q ss_pred eEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 380 VGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 380 ~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
|.||+||.|. +++||+++.|++++.+.+.+-+++.
T Consensus 258 V~IGaga~Il~gv~IGd~a~IGagsvV~~dVp~~sv 293 (310)
T 3f1x_A 258 VIVYSNATILGRVTIGKGATVGGNIWVTENVPAGSR 293 (310)
T ss_dssp CEECTTCEEESSCEECTTCEECSSCEECSCBCTTCE
T ss_pred cEEcCCCEECCCcEECCCCEECCCCEECCccCCCcE
Confidence 8999999998 9999999999999998888877764
|
| >3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.71 E-value=2.5e-08 Score=90.85 Aligned_cols=35 Identities=20% Similarity=0.114 Sum_probs=27.8
Q ss_pred eEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 380 VGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 380 ~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
|.||.||.|. +++||++++|++++.+.+.+-.++.
T Consensus 223 v~IGaga~Il~gv~IG~~a~IGagsvV~kdVp~~sv 258 (287)
T 3mc4_A 223 VLIGAGAKILGNIQVGQCSKIAAGSVVLKSVPHNVT 258 (287)
T ss_dssp CEECTTCEEESSCEECTTCEECTTCEECSCBCTTEE
T ss_pred CEECCCCEECCCcEECCCCEECCCCEEccccCCCCE
Confidence 7888888887 7888888888888887777766553
|
| >1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=98.69 E-value=3.9e-08 Score=84.34 Aligned_cols=75 Identities=11% Similarity=0.113 Sum_probs=56.7
Q ss_pred cceECCCCEEc-ceEEe---eeEEccCcEECCCcEEee-------------------cEEeCCccccchhHHHhhhhCCC
Q 014953 321 DSIISHGSFIT-SSFIE---HSVVGIRSRINANVHLKD-------------------TMMLGADFYETDAEVASLLAEGR 377 (415)
Q Consensus 321 ~~~ig~~~~I~-~~~i~---~svig~~~~ig~~~~i~~-------------------sii~~~~~~~~~~~~~~~~~~~~ 377 (415)
++.||++|.|+ ++.|. ...||++|.|++++.|.. +.|+++
T Consensus 72 ~v~IG~~~~I~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG~~----------------- 134 (182)
T 1ocx_A 72 NIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNN----------------- 134 (182)
T ss_dssp TEEECSSEEECSSEEEECSSCEEECTTCEECTTCEEECEECCSSHHHHTTTCBEECCEEECTT-----------------
T ss_pred CEEECCCcEEeCCeEEEeccceEEcCCcEEeCCcEEEeCCCccChhhcccCccccCCeEEeCC-----------------
Confidence 56667777776 56553 578999999999999852 344444
Q ss_pred cceEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 378 VPVGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 378 ~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
|.||.||.|. ++.||+++.|++++.+.+.|-.++.
T Consensus 135 --v~Ig~~a~I~~gv~IG~~~vIgagsvV~~dip~~~v 170 (182)
T 1ocx_A 135 --VWIGGRAVINPGVTIGDNVVVASGAVVTKDVPDNVV 170 (182)
T ss_dssp --CEECTTCEECTTCEECTTCEECTTCEECSCBCSSEE
T ss_pred --eEECCCCEECCCcEECCCCEECCCCEECCcCCCCcE
Confidence 8888888887 8889999999999888877776654
|
| >2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A | Back alignment and structure |
|---|
Probab=98.69 E-value=2.1e-08 Score=93.99 Aligned_cols=107 Identities=13% Similarity=0.091 Sum_probs=63.0
Q ss_pred cCCCCCccccCccCCCeee-cCCccccceECCCCEEc-ceEEeeeEEccCcEECCCcE----------------------
Q 014953 296 YDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVH---------------------- 351 (415)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~i-~~~~i~~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~---------------------- 351 (415)
+.+...+...+.|++++.| +++.|.+|+||++++|+ ++.|++|+|+++|.|+.+++
T Consensus 74 I~~~~~I~g~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~s~I~~s~I~~~~~I~~~~~i~~~s~I~~~~~~~~~~~~g~~ 153 (334)
T 2pig_A 74 ITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECAIYGDARVLNQSEILAIQGLTHEHAQILQ 153 (334)
T ss_dssp ECTTCEEESSCEEESSCEECTTCEEESCEEESSCEECTTCEEESCEEESSEEECTTCEEESSCEEEC--------CCCEE
T ss_pred ECCCcEEeeeeeECCCcEECCCCEEEeEEEcCCCEEeCCcEEeccEEcCCeEEecCCEEeCCEEEeecceeecccCCCeE
Confidence 3444555555666666666 66777788888888887 67777777776666555543
Q ss_pred ------EeecEEeCCccccchhHHH-hhhhCCCcceEeCCCCEEeee-----EECCCeEEcCCccc
Q 014953 352 ------LKDTMMLGADFYETDAEVA-SLLAEGRVPVGIGENTKIKYE-----QLKPICHIVETKYD 405 (415)
Q Consensus 352 ------i~~sii~~~~~~~~~~~~~-~~~~~~~~~~~Ig~~~~i~~~-----~i~~~~~i~~~~~~ 405 (415)
|.+|+|..++.|+.++.+. +.++++ +.|++++.+.+. +|++++.|+.+++.
T Consensus 154 I~~~a~I~~s~I~~g~~I~~~a~I~~svI~~~---a~I~~~a~V~~~~~~~v~I~~~~~I~g~a~V 216 (334)
T 2pig_A 154 IYDRATVNHSRIVHQVQLYGNATITHAFIEHR---AEVFDFALIEGDKDNNVWICDCAKVYGHARV 216 (334)
T ss_dssp ECTTCEEESCEEETTCEECTTCEEESEEECTT---CEECTTCEEECCSSCCEEECTTCEECTTCEE
T ss_pred ECCCCEEeccEEcCCCEEcCCeEEeCcEEcCC---CEECCCcEECCceeccEEECCCcEEeeeEEE
Confidence 3344444444444444332 233444 566666666533 36666666665544
|
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=98.67 E-value=3.9e-08 Score=96.06 Aligned_cols=66 Identities=20% Similarity=0.142 Sum_probs=60.0
Q ss_pred cCccCCCeeecCCccccceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeC
Q 014953 305 SRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIG 383 (415)
Q Consensus 305 ~~~i~~~~~i~~~~i~~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig 383 (415)
++.|+++|.|.++.|.+++||++|+|+ ++.|.+|+||++|.||++|.|.+|+|+++ |.||
T Consensus 324 ~~~ig~~~~I~~~~i~~~~ig~~~~I~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~-------------------~~i~ 384 (420)
T 3brk_X 324 SSVVSGDCIISGAALNRSLLFTGVRANSYSRLENAVVLPSVKIGRHAQLSNVVIDHG-------------------VVIP 384 (420)
T ss_dssp SCEECSSCEEESCEEESCEECTTCEECTTCEEEEEEECTTCEECTTCEEEEEEECTT-------------------CEEC
T ss_pred CCEECCCCEEcCCEEeCcEEcCCCEECCCCEEcceEEcCCCEECCCCEEeceEECCC-------------------CEEC
Confidence 677888888877888899999999999 79999999999999999999999999999 7888
Q ss_pred CCCEEe
Q 014953 384 ENTKIK 389 (415)
Q Consensus 384 ~~~~i~ 389 (415)
+|++|.
T Consensus 385 ~~~~i~ 390 (420)
T 3brk_X 385 EGLIVG 390 (420)
T ss_dssp TTCEES
T ss_pred CCCEEe
Confidence 888876
|
| >1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 | Back alignment and structure |
|---|
Probab=98.67 E-value=3.3e-08 Score=90.51 Aligned_cols=74 Identities=14% Similarity=0.098 Sum_probs=51.5
Q ss_pred cCCCCCccccCccCCCeee-cCCccc-cceECCCCEEc-ceEEe-eeEEccCcEECCCcEE-------------eecEEe
Q 014953 296 YDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHL-------------KDTMML 358 (415)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i~-~svig~~~~ig~~~~i-------------~~sii~ 358 (415)
++|.+.+.+.+.+++++.| +++.|. ++.||++|.|+ ++.|. ++.||++|.|++++.| .+++|+
T Consensus 4 I~p~a~I~~~a~Ig~~~~Ig~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~~~Ig~~~~~~~~~g~~~~~~IG 83 (270)
T 1j2z_A 4 IAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIG 83 (270)
T ss_dssp BCTTCEECTTSEECTTCEECTTCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEESCCCSCSSCCSCCCEEEEC
T ss_pred cCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCcEEeCCeEEcCCCEEEeeeEECcCCccccccCCccceEEC
Confidence 4566666666666666666 566664 77788888887 57776 7888888888888888 456666
Q ss_pred CCccccchhHH
Q 014953 359 GADFYETDAEV 369 (415)
Q Consensus 359 ~~~~~~~~~~~ 369 (415)
+++.|..++.+
T Consensus 84 ~~~~I~~~~~I 94 (270)
T 1j2z_A 84 EDNLIREFCMI 94 (270)
T ss_dssp SSCEECTTCEE
T ss_pred CCCEECCCeEE
Confidence 66666655544
|
| >3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.66 E-value=3.1e-08 Score=92.11 Aligned_cols=53 Identities=21% Similarity=0.355 Sum_probs=26.1
Q ss_pred ccccCccCCCeee-cCCccccceECCCCEEc-ceEEe-eeEEccCcEECCCcEEee
Q 014953 302 IYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKD 354 (415)
Q Consensus 302 ~~~~~~i~~~~~i-~~~~i~~~~ig~~~~I~-~~~i~-~svig~~~~ig~~~~i~~ 354 (415)
+.+.+.+.++++| +++.|...+|+.+|.|| ++.|. +++||++|.||+++.|..
T Consensus 148 I~p~a~I~~~~~IG~g~~I~~~~I~~g~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~ 203 (316)
T 3tk8_A 148 VVPPAIARRGSFIAKNVVLMPSYTNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSG 203 (316)
T ss_dssp ECTTCEEBTTCEECTTCEECSEEECTTCEECTTCEECTTEEECTTCEECTTCEECT
T ss_pred EeCCeEEeCCcEEcCCCEECCCEEeCCCEECCCCEEccceEECCCCEECCCCEEcC
Confidence 3344444444444 34444434555555555 35553 255555555555555544
|
| >1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=6.5e-08 Score=87.52 Aligned_cols=59 Identities=20% Similarity=0.174 Sum_probs=40.6
Q ss_pred eeEEccCcEECCCcEEeec---------EEeCCccccchhHHHhhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccC
Q 014953 337 HSVVGIRSRINANVHLKDT---------MMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDS 406 (415)
Q Consensus 337 ~svig~~~~ig~~~~i~~s---------ii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~ 406 (415)
+|+||++|+|++++.|.++ +|+++ |.||.|+.|. +++||++++|++++.+.
T Consensus 163 ~~~IG~~v~I~~gvtig~~~~~~~~~~~~IGd~-------------------v~IGaga~Il~gv~IG~~a~IGagsvV~ 223 (267)
T 1ssq_A 163 TSVIENDVSILQGVTLGGTGKESGDRHPKVREG-------------------VMIGAGAKILGNIEVGKYAKIGANSVVL 223 (267)
T ss_dssp TCEECTTCEECTTCEEECCSSSCSSCSCEECTT-------------------CEECTTCEEESSCEECTTCEECTTCEEC
T ss_pred eeEECCCCEEcCCcEECCCcccCCCCCeEECCC-------------------eEEcCCCEEeCCcEECCCCEECCCCEEc
Confidence 4566666666666666653 44444 7788888876 78888888888888777
Q ss_pred cccccccc
Q 014953 407 STISRFSL 414 (415)
Q Consensus 407 ~~~~~~~~ 414 (415)
+.+.+++.
T Consensus 224 ~dVp~~~~ 231 (267)
T 1ssq_A 224 NPVPEYAT 231 (267)
T ss_dssp SCBCTTCE
T ss_pred cCCCCCCE
Confidence 77766553
|
| >3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.65 E-value=3.7e-08 Score=89.22 Aligned_cols=83 Identities=12% Similarity=0.037 Sum_probs=68.8
Q ss_pred ccceECCCCEEc-ceEEe---eeEEccCcEECCCcEEe----ecEEeCCccccchhHHHhh---------------hhCC
Q 014953 320 VDSIISHGSFIT-SSFIE---HSVVGIRSRINANVHLK----DTMMLGADFYETDAEVASL---------------LAEG 376 (415)
Q Consensus 320 ~~~~ig~~~~I~-~~~i~---~svig~~~~ig~~~~i~----~sii~~~~~~~~~~~~~~~---------------~~~~ 376 (415)
.++.||++|.|. ++.+. +++||++|.|++++.|. ++.|++++.|+.++.+... ...
T Consensus 84 ~~v~Ig~~~~I~~~~~i~~g~~v~IG~~~~Ig~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~- 162 (252)
T 3jqy_B 84 NYVRIHKNSKIKGDIVATKGSKVIIGRRTTIGAGFEVVTDKCNVTIGHDCMIARDVILRASDGHPIFDIHSKKRINWAK- 162 (252)
T ss_dssp CEEEECTTCEEEEEEEEESSCEEEECTTCEECTTCEEECSSSEEEECTTCEECSSEEEECSCSSCEEETTTCBBCCCCC-
T ss_pred CeEEECCCCEECCceEEccCCEEEECCCCEECCCcEEEeCCCCeEECCCCEEcCCcEEecCCCcccccccccccccccC-
Confidence 356799999998 57773 79999999999999999 8999999999888876542 111
Q ss_pred CcceEeCCCCEEe-eeEECCCeEEcCCccc
Q 014953 377 RVPVGIGENTKIK-YEQLKPICHIVETKYD 405 (415)
Q Consensus 377 ~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~ 405 (415)
+++||++|.|. +|+|.++++|++++.+
T Consensus 163 --~v~Igd~v~IG~~a~I~~gv~IG~~~~I 190 (252)
T 3jqy_B 163 --DIIISSYVWVGRNVSIMKGVSVGSGSVI 190 (252)
T ss_dssp --CEEECSSCEECSSEEECTTCEECTTCEE
T ss_pred --CeEEecCcEECCCCEECCCCEECCCCEE
Confidence 37899999998 9999999999999864
|
| >3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A | Back alignment and structure |
|---|
Probab=98.64 E-value=5.3e-08 Score=84.53 Aligned_cols=77 Identities=16% Similarity=0.215 Sum_probs=47.4
Q ss_pred cceEC--CCCEEc-ceEEe-eeEEccCcEECCCcEEe-ecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEe-eeEEC
Q 014953 321 DSIIS--HGSFIT-SSFIE-HSVVGIRSRINANVHLK-DTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-YEQLK 394 (415)
Q Consensus 321 ~~~ig--~~~~I~-~~~i~-~svig~~~~ig~~~~i~-~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~~i~ 394 (415)
++.|| ++|.|+ ++.|. ++.||++|.|++++.|. ++.|+++++|.+++.+. .+ ++||++|.|. +++|.
T Consensus 87 ~~~Ig~~~g~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~----~~---~~Ig~~~~Ig~~~~i~ 159 (194)
T 3bfp_A 87 SAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCA----GN---VKIGKNCFLGINSCVL 159 (194)
T ss_dssp TCEECTTSCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEEC----TT---CEECTTCEECTTCEEC
T ss_pred CceeCCCCCcEEcCCCEECCCCEECCCCEECCCCEEcCCCEECCCCEECCCCEEC----CC---cEECCCCEEcCCCEEC
Confidence 44555 555555 34442 57777777777777776 57777775555543332 22 6677777776 66666
Q ss_pred CCeEEcCCcc
Q 014953 395 PICHIVETKY 404 (415)
Q Consensus 395 ~~~~i~~~~~ 404 (415)
++++|++++.
T Consensus 160 ~~~~Ig~~~~ 169 (194)
T 3bfp_A 160 PNLSLADDSI 169 (194)
T ss_dssp TTCEECTTCE
T ss_pred CCCEECCCCE
Confidence 6777776664
|
| >3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.64 E-value=3.9e-08 Score=91.65 Aligned_cols=15 Identities=13% Similarity=0.306 Sum_probs=7.2
Q ss_pred eEEccCcEECCCcEE
Q 014953 338 SVVGIRSRINANVHL 352 (415)
Q Consensus 338 svig~~~~ig~~~~i 352 (415)
++||++|.|++++.|
T Consensus 78 ~~IG~~~~Ig~~a~I 92 (305)
T 3t57_A 78 TFIGCNNIIGHHAVV 92 (305)
T ss_dssp EEECSSCEECTTCEE
T ss_pred eEECCceEECCccEe
Confidence 444444444444444
|
| >1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6 | Back alignment and structure |
|---|
Probab=98.64 E-value=6.8e-08 Score=88.19 Aligned_cols=28 Identities=11% Similarity=0.013 Sum_probs=25.2
Q ss_pred cCeEE--EEcCCeecccChHHHHHHHHHcC
Q 014953 129 IEDVL--ILSGDHLYRMDYMDFVQNHRQSG 156 (415)
Q Consensus 129 ~~~~l--v~~gD~i~~~~l~~~l~~h~~~~ 156 (415)
.+++| ++++|++...+|.++|.+|...+
T Consensus 39 ~EP~L~~~l~~~IL~~~~l~~aLa~~La~k 68 (289)
T 1t3d_A 39 CEPMLASFYHATLLKHENLGSALSYMLANK 68 (289)
T ss_dssp HCGGGHHHHHHHTTTCSSHHHHHHHHHHHH
T ss_pred cCCHHHHHhcccccCCCCHHHHHHHHHhcc
Confidence 58999 99999999999999999998764
|
| >4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=8e-08 Score=85.19 Aligned_cols=9 Identities=44% Similarity=0.689 Sum_probs=3.6
Q ss_pred eEeCCCCEE
Q 014953 380 VGIGENTKI 388 (415)
Q Consensus 380 ~~Ig~~~~i 388 (415)
++||++|.|
T Consensus 184 ~~Ig~~~~i 192 (220)
T 4ea9_A 184 VTIGADTIV 192 (220)
T ss_dssp CEECTTCEE
T ss_pred cEECCCCEE
Confidence 334444433
|
| >3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=5.8e-08 Score=88.35 Aligned_cols=75 Identities=16% Similarity=0.154 Sum_probs=54.2
Q ss_pred cCCCCCccccCccCCCeee-cCCcc-ccceECCCCEEc-ceEEe-eeEEccCcEECCCcEE--------------eecEE
Q 014953 296 YDATKPIYTSRRNLPPSKI-DDSKI-VDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHL--------------KDTMM 357 (415)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~i-~~~~i-~~~~ig~~~~I~-~~~i~-~svig~~~~ig~~~~i--------------~~sii 357 (415)
++|.+.+.+.+.+++++.| +.+.| .++.||++|.|+ ++.|. ++.||++|.|++++.| .++.|
T Consensus 3 I~p~a~I~~~a~ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~v~I 82 (259)
T 3hsq_A 3 IHPTAIIDPKAELHESVEVGPYSIIEGNVSIQEGTIIEGHVKICAGSEIGKFNRFHQGAVIGVMPQDLGFNQQLLTKTVI 82 (259)
T ss_dssp BCTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTEEECSSCEECTTCEEEECCSCTTCCTTSCCCEEE
T ss_pred cCCCcEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCcEEcCCcEECCCcEECCCCEECCCcccccccCccCCcEEE
Confidence 3455555556666666666 55555 377888888887 57775 5999999999999999 45777
Q ss_pred eCCccccchhHHH
Q 014953 358 LGADFYETDAEVA 370 (415)
Q Consensus 358 ~~~~~~~~~~~~~ 370 (415)
++++.|.+++.+.
T Consensus 83 G~~~~Ig~~~~I~ 95 (259)
T 3hsq_A 83 GDHNIFREYSNIH 95 (259)
T ss_dssp CSSCEECTTCEEE
T ss_pred CCCcEECCCCEEC
Confidence 8887777777664
|
| >3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A | Back alignment and structure |
|---|
Probab=98.61 E-value=3e-08 Score=90.91 Aligned_cols=98 Identities=16% Similarity=0.135 Sum_probs=67.4
Q ss_pred ccCccCCCeee-cCCccc-cceECCCCEEc-ceEEe-eeEEccCcEECCCcEEeecEEeCCccccchhHHH---------
Q 014953 304 TSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVA--------- 370 (415)
Q Consensus 304 ~~~~i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i~-~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~--------- 370 (415)
....+.+++.| +.+.|. ++.||+||+|+ ++.|. ++.||++|.|..++.+. +.|+++++|.+++.+.
T Consensus 177 ~~~vI~~gv~I~P~AvI~~GA~IGeGv~Igp~a~Vn~na~IGdg~iI~~~a~ig-v~IGdnv~IgpGa~IgG~~~~~~~~ 255 (347)
T 3r5d_A 177 TDYVVPAGVRIADTARVRLGAYIGEGTTVMHEGFVNFNAGTEGPGMIEGRVSAG-VFVGKGSDLGGGCSTMGTLSGGGNI 255 (347)
T ss_dssp GGTCCCTTEEESSGGGBBTTEEECTTEEECTTCEECTTEEESSSEEECSEECTT-CEECTTEEECTTCEECC------CC
T ss_pred cceeccCCcEECCcCEECCCCEECCCCEECCCCEECCCCEECCCcEEcCCceEe-EEECCCCEECCCCEEccccCCCCcc
Confidence 34455555666 445553 56677777777 45553 67777777777666554 7888888888887664
Q ss_pred -hhhhCCCcceEeCCCCEEeeeEECCCeEEcCCcccC
Q 014953 371 -SLLAEGRVPVGIGENTKIKYEQLKPICHIVETKYDS 406 (415)
Q Consensus 371 -~~~~~~~~~~~Ig~~~~i~~~~i~~~~~i~~~~~~~ 406 (415)
..|+++ |.||.|+.| ++.||++++|++|+.+.
T Consensus 256 ~V~IGdn---v~IGAnAtI-GVtIGd~~iIGAGSVVt 288 (347)
T 3r5d_A 256 VISVGEG---CLIGANAGI-GIPLGDRNIVEAGLYIT 288 (347)
T ss_dssp CCEECTT---CEECTTCEE-CSCBCTTCEECTTCEEC
T ss_pred ceEECCC---CEECCCCEE-eeEECCCCEECCCCEEC
Confidence 356777 888888888 77778888888777644
|
| >3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A | Back alignment and structure |
|---|
Probab=98.60 E-value=1e-07 Score=87.23 Aligned_cols=83 Identities=6% Similarity=0.119 Sum_probs=43.1
Q ss_pred ceECCCCEEcceEEe-eeEEccCcEECCCcEEee-cEEeCCccccchhHH----------HhhhhCCCcceEeCCCCEEe
Q 014953 322 SIISHGSFITSSFIE-HSVVGIRSRINANVHLKD-TMMLGADFYETDAEV----------ASLLAEGRVPVGIGENTKIK 389 (415)
Q Consensus 322 ~~ig~~~~I~~~~i~-~svig~~~~ig~~~~i~~-sii~~~~~~~~~~~~----------~~~~~~~~~~~~Ig~~~~i~ 389 (415)
+.||++|.|+...+. ++.||++|.|+.++.|.+ +.|+++++|..++.+ .+.|+++ |.||.||.|.
T Consensus 117 ~~Ig~g~~I~~~~i~~~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~g~~~~~~~~~v~IGd~---v~IG~~a~I~ 193 (276)
T 3gos_A 117 AFIARNTVLMPSYVNIGAFVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDN---CFVGARSEVV 193 (276)
T ss_dssp CEECTTCEECSEEECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTSCCCEECTT---CEECTTCEEC
T ss_pred CEECCCCEEcCCEEcCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCccccCCCCCeEECCC---CEECCCCEEC
Confidence 344444444322221 444455555544444444 455555555544443 2345555 6666666665
Q ss_pred -eeEECCCeEEcCCcccCc
Q 014953 390 -YEQLKPICHIVETKYDSS 407 (415)
Q Consensus 390 -~~~i~~~~~i~~~~~~~~ 407 (415)
++.||+++.|++++.+.+
T Consensus 194 ~gv~IG~~avIgagsvV~~ 212 (276)
T 3gos_A 194 EGVIVEEGSVISMGVFIGQ 212 (276)
T ss_dssp TTCEECTTCEECTTCEECT
T ss_pred CCCEECCCCEECCCCEECC
Confidence 666666666666666554
|
| >3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis} | Back alignment and structure |
|---|
Probab=98.60 E-value=1e-07 Score=88.28 Aligned_cols=26 Identities=8% Similarity=-0.068 Sum_probs=12.5
Q ss_pred eEeCCCCEEe-eeEECCCeEEcCCccc
Q 014953 380 VGIGENTKIK-YEQLKPICHIVETKYD 405 (415)
Q Consensus 380 ~~Ig~~~~i~-~~~i~~~~~i~~~~~~ 405 (415)
|.||.||.|. +++||+++.|++++.+
T Consensus 209 v~IG~~a~I~~gv~IG~~avIgagsvV 235 (304)
T 3eg4_A 209 CFIGARSEVVEGCIVREGSVLGMGVFI 235 (304)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEE
T ss_pred CEECCCCEEcCCcEECCCcEECCCCEE
Confidence 4444444443 4455555555555443
|
| >3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=9.8e-08 Score=95.40 Aligned_cols=98 Identities=13% Similarity=0.099 Sum_probs=72.8
Q ss_pred CCCCCccccCccCCCeee-cCCccccceECCCCEEc-ceEEeeeEEccCcEECCCcEEee--------cEEeCCccccch
Q 014953 297 DATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKD--------TMMLGADFYETD 366 (415)
Q Consensus 297 ~~~~~~~~~~~i~~~~~i-~~~~i~~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~--------sii~~~~~~~~~ 366 (415)
.+.+.+.+++.++..+.+ ..+.+++++||++|.|+ .+.+.+|+||++|.||+++.+.| ++|+++++|+.+
T Consensus 344 g~~~~i~~~~~i~~~v~IG~~v~ik~s~Ig~gskI~~~~~i~d~~Ig~~v~IG~g~i~~n~dg~~~~~t~IGd~~~iG~~ 423 (501)
T 3st8_A 344 GPFTYLRPGTALGADGKLGAFVEVKNSTIGTGTKVPHLTYVGDADIGEYSNIGASSVFVNYDGTSKRRTTVGSHVRTGSD 423 (501)
T ss_dssp CSSEEECTTCEECTTCEEEETEEEESCEECTTCEEEESCEEESEEECSSCEECTTCEEECBCSSSBCCEEECTTCEECTT
T ss_pred CCceeecCCcEEccccccCCeEEEccceecCCcEEeccceecCceEcCCCEECCCEEEEcccCCcccCCEECCCcEECCC
Confidence 344445555666666666 56677899999999999 58889999999999999999865 788888777766
Q ss_pred hHHHhhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCc
Q 014953 367 AEVASLLAEGRVPVGIGENTKIK-YEQLKPICHIVETK 403 (415)
Q Consensus 367 ~~~~~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~ 403 (415)
+.+.. + +.||+||.|. +|+|.++ |++++
T Consensus 424 ~~l~~----~---v~Ig~~~~i~ags~v~~d--vp~~~ 452 (501)
T 3st8_A 424 TMFVA----P---VTIGDGAYTGAGTVVRED--VPPGA 452 (501)
T ss_dssp CEEES----S---EEECTTCEECTTCEECSC--BCTTC
T ss_pred CEEcC----C---cEECCCCEECCCCEECcc--cCCCC
Confidence 54432 2 7777777776 7777766 45554
|
| >3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=98.57 E-value=3.1e-06 Score=82.04 Aligned_cols=345 Identities=13% Similarity=0.123 Sum_probs=184.0
Q ss_pred cceEEEEEcCCCCCcccccccCCcccceee-CCcceeehhehhhhhcc----CCc-EEEEEcccC-hhHHHHHHHhhccC
Q 014953 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPI-GGAYRLIDVPMSNCINS----GIN-KVYILTQYN-SASLNRHLARAYNY 79 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~llpv-~g~~pli~~~l~~l~~~----gi~-~I~vv~~~~-~~~i~~~l~~~~~~ 79 (415)
.++-.|.||||.||||+ ...||.++|+ .|+ ++++..++++... |.. .++|-++.. ++...+++.++..|
T Consensus 75 ~kvavvlLaGGlGTRLG---~~~pKg~~~v~sgk-sflql~~eqI~~l~~~~~~~iPl~IMTS~~T~~~T~~~~~k~~~F 150 (484)
T 3gue_A 75 RQAVVLKLNGGLGTGMG---LNGPKSLLQVKNGQ-TFLDFTALQLEHFRQVRNCNVPFMLMNSFSTSGETKNFLRKYPTL 150 (484)
T ss_dssp TTEEEEEEECCCCGGGT---CSSCGGGSEEETTE-EHHHHHHHHHHHHHHHHTCCCCEEEEECTTTHHHHHHHGGGCHHH
T ss_pred hhcEEEEEcCCcccccC---CCCCceeeecCCCC-cHHHHHHHHHHHHHHHcCCCceEEEECCcchhHHHHHHHHhCccc
Confidence 47889999999999997 7799999999 566 9999999888752 332 456666654 57788888764222
Q ss_pred CC----CcccCCceEEEecCccC-----CCCCCC-ccccchHHHHHHhh--hhhcCCCCCCcCeEEEEcCCeecccChHH
Q 014953 80 GS----GVTFGDGCVEVLAATQT-----PGEAGK-RWFQGTADAVRQFH--WLFEDPRNKVIEDVLILSGDHLYRMDYMD 147 (415)
Q Consensus 80 ~~----~~~~~~~~v~i~~~~~~-----~~~~~~-~~~~Gt~~al~~~~--~~i~~~~~~~~~~~lv~~gD~i~~~~l~~ 147 (415)
+- -.-|....+..+..... ...... -.+.|.|+-..... ..+++....+.+.+.+.+.|.+...---.
T Consensus 151 gl~~~~v~~F~Q~~~P~i~~dg~~~i~~~~~~~i~~~P~GhGdiy~aL~~sGiLd~l~~~Gieyi~v~~vDNL~a~~Dp~ 230 (484)
T 3gue_A 151 YEVFDSDIELMQNRVPKIRQDNFFPVTYEADPTCEWVPPGHGDVYTVLYSSGKLDYLLGKGYRYMFISNGDNLGATLDVR 230 (484)
T ss_dssp HTTCCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCGGGHHHHHHHHSHHHHHHHTTCCEEEEEETTCTTCCCCHH
T ss_pred CCCccceEEEEeCceeeEecCCCceeecCCCCceeeccCCchHHHHHHHhCCcHHHHHHcCCEEEEEEcCCCcccccCHH
Confidence 21 11111111111111110 000001 12346655333221 12222111236899999999966543356
Q ss_pred HHHHHHHcCCcEEEEEEEcCCCcCCcccEEEEC---------CCCC--eEEEEEcCCccccccccccccccccccccccc
Q 014953 148 FVQNHRQSGADITISCLPMDDSRASDFGLMKIN---------NEGR--VLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEE 216 (415)
Q Consensus 148 ~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d---------~~~~--v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (415)
++.++.++++++.+-+.+...+ .+.-|++... .+|+ ++++.+-|..... .+ +. ..
T Consensus 231 ~lG~~~~~~~d~~~kvv~Kt~~-dekgG~l~~~~~~~~~~~~~dG~~~vvEyseip~e~~~-~f-----------~~-~~ 296 (484)
T 3gue_A 231 LLDYMHEKQLGFLMEVCRRTES-DKKGGHLAYKDVIDETTGQTRRRFVLRESAQCPKEDED-SF-----------QN-IA 296 (484)
T ss_dssp HHHHHHHTTCSEEEEEEECCTT-CCSSEEEEEEC--------CCCEEEEEEGGGSCGGGHH-HH-----------TC-TT
T ss_pred HHHHHHhcCCCEEEEEEECCCC-CCceeEEEEEccccccccCCCCCEEEEEeccCCHHHHh-hh-----------cC-CC
Confidence 8888899999999888776653 2345655442 2454 3334333332110 00 00 00
Q ss_pred ccceeeeeEEEEeHHHHHHHHhhhC-----CC-------------------CCcccccchhhhcccceEEEEEeC-ceEE
Q 014953 217 KPYIASMGVYLFKKEILLNLLRWRF-----PT-------------------ANDFGSEIIPASANEQFLKAYLFN-DYWE 271 (415)
Q Consensus 217 ~~~l~~~Giyi~~~~~l~~~l~~~~-----~~-------------------~~~~~~~~l~~l~~~~~i~~~~~~-g~~~ 271 (415)
..-+.+++-.+++-..++++++... +. .+.|..|+++.. .+..++.++ ..|.
T Consensus 297 g~~~FNtnNi~~~l~~l~~~l~~~~g~~~Lp~~vn~K~id~~k~~~~~~iqlE~~~~d~~~~~---~~~~~ieV~R~rF~ 373 (484)
T 3gue_A 297 KHCFFNTNNIWINLMELKKMMDEQLGVLRLPVMRNPKTVNPQDSQSTKVYQLEVAMGAAISLF---DRSEAVVVPRERFA 373 (484)
T ss_dssp TSCEEEEEEEEEEHHHHHHHHHHTTTCCCCCCEEEEEESSTTCTTSCEEEEEECCGGGGGTTS---SSEEEEECCGGGCC
T ss_pred CceEeEeeeEEEEHHHHHHHHHhccCcCCCCcEeccceecCCCCCCCCEeehHHHHHHHHHhC---CccEEEEEChhhcc
Confidence 1234578888999888877776531 10 011222222222 245555554 4588
Q ss_pred ecCCHHHHHHHHHhhcCCCCCCCccC-CCCCccccCccCCCeeecC---Cccc--cceECCC--CEEcceEEeeeEEccC
Q 014953 272 DIGTIRSFFEANLALTAHPPMFSFYD-ATKPIYTSRRNLPPSKIDD---SKIV--DSIISHG--SFITSSFIEHSVVGIR 343 (415)
Q Consensus 272 di~t~~~y~~an~~~l~~~~~~~~~~-~~~~~~~~~~i~~~~~i~~---~~i~--~~~ig~~--~~I~~~~i~~svig~~ 343 (415)
.+.+..|++.+..++......-.+.. +.. ....|.+.+.. ..+. ...+..| +.++ ..+=.|--+
T Consensus 374 PvKn~sdLl~~~Sdly~l~~~~~l~~~~~~-----~~~~P~v~L~~~~~~~v~~f~~rf~~giPsl~~---~~~L~V~Gd 445 (484)
T 3gue_A 374 PVKTCSDLLALRSDAYQVTEDQRLVLCEER-----NGKPPAIDLDGEHYKMIDGFEKLVKGGVPSLRQ---CTSLTVRGL 445 (484)
T ss_dssp CCSSHHHHHHHHSTTEEECTTSCEEECGGG-----TTCCCEEEECTTTSSSHHHHHHHHTTCCCBCTT---EEEEEEESS
T ss_pred ccccchHHHHHhhhceeccCCceEEecccc-----CCCCCeEEECchhcCcHHHHHHhcCCCCCChhh---CCEEEEecc
Confidence 89999999998777654322111111 100 00111122211 1221 1112221 1121 123455567
Q ss_pred cEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEeeeEEC
Q 014953 344 SRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKYEQLK 394 (415)
Q Consensus 344 ~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~~i~ 394 (415)
++.|+++.+.+.++.... +| .+..|-+|++++|.++.
T Consensus 446 v~fg~~v~l~G~v~i~~~-------------~g-~~~~ip~g~~l~~~~~~ 482 (484)
T 3gue_A 446 VEFGADVSVRGNVVIKNL-------------KE-EPLIIGSGRVLDNEVVV 482 (484)
T ss_dssp EEECTTCEEEEEEEEEEC-------------SS-SCEEECTTCEEESCEEE
T ss_pred eEECCCcEEEEEEEEEcC-------------CC-CeeecCCCCEecceecC
Confidence 888888888887766431 11 12678999999887763
|
| >3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=98.53 E-value=1.5e-07 Score=82.92 Aligned_cols=35 Identities=14% Similarity=0.143 Sum_probs=30.0
Q ss_pred eEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 380 VGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 380 ~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
|.||.||.|. ++.||+++.|++++.+.+.+-++++
T Consensus 118 v~IG~~a~I~~gv~IG~~~iIgagsvV~~dVp~~~v 153 (212)
T 3eev_A 118 VWIGTEAMIMPGVKIGHGAIIASRSVVTKDVAPYEV 153 (212)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEECSCBCTTEE
T ss_pred CEECCCCEEcCCCEECCCCEECCCCEEccccCCCcE
Confidence 8888888887 8999999999999988888877764
|
| >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=6e-08 Score=95.63 Aligned_cols=97 Identities=18% Similarity=0.103 Sum_probs=76.9
Q ss_pred cCccCCCeeecCCccccceECCCCEEc-ceEEeeeEEccC-------------------cEECCCcEEeecEEeCCcccc
Q 014953 305 SRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIR-------------------SRINANVHLKDTMMLGADFYE 364 (415)
Q Consensus 305 ~~~i~~~~~i~~~~i~~~~ig~~~~I~-~~~i~~svig~~-------------------~~ig~~~~i~~sii~~~~~~~ 364 (415)
++.|+++|+|.++.+.+++||++|.|+ ++.|.++++..+ +.||+++.|.+++|++++.|+
T Consensus 330 ~~~Ig~~~~I~~~~i~~~~Ig~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~i~~~~Ig~~~~IG 409 (451)
T 1yp2_A 330 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIG 409 (451)
T ss_dssp EEEECTTCEEEEEEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEESEEECTTCEEC
T ss_pred CeEECCCCEEcceEEeccEECCCCEECCCCEEcCceEECCCCcccccccccccccCceeEEECCCCEEeccEeCCCcEEC
Confidence 456677777744667789999999999 799999888888 999999999999999999888
Q ss_pred chhHHHhh--hhCCCcceEeCCCCEEe-e-eEECCCeEEcCCcc
Q 014953 365 TDAEVASL--LAEGRVPVGIGENTKIK-Y-EQLKPICHIVETKY 404 (415)
Q Consensus 365 ~~~~~~~~--~~~~~~~~~Ig~~~~i~-~-~~i~~~~~i~~~~~ 404 (415)
+++.+... +... ++||++|.|. + ++||+++.|++++.
T Consensus 410 ~~~~i~~~~~~~~~---~~ig~~~~ig~~~v~Ig~~a~i~agsv 450 (451)
T 1yp2_A 410 DNVKIINKDNVQEA---ARETDGYFIKSGIVTVIKDALIPSGII 450 (451)
T ss_dssp TTCEECCSSCCSCE---EEGGGTEEEETTEEEECTTCEECTTCB
T ss_pred CCCEEeCCcccccC---ceeCCCEEEcCCEEEECCCcEECCCcc
Confidence 88877642 2222 3677777776 3 67999999998875
|
| >3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=8.1e-08 Score=87.43 Aligned_cols=94 Identities=12% Similarity=0.139 Sum_probs=43.3
Q ss_pred cCCCeee-cCCccc-cceECCCCEEc-ceEEe-eeEEccCcEECCCcEEeecEEeCCccccchhHHHhhh-hCCCcceEe
Q 014953 308 NLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLL-AEGRVPVGI 382 (415)
Q Consensus 308 i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i~-~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~-~~~~~~~~I 382 (415)
+..++.| +.+.|. ++.||+||+|+ ++.|. ++.++.+|.|...+.+ ++.|+++++|..++.+.... ..++.+++|
T Consensus 158 I~~gv~I~P~AvI~~gA~IGeGv~Igp~~fVniga~Ig~g~~In~~i~i-Gv~IGd~v~IgpGa~IgG~~~~~~~~~V~I 236 (332)
T 3fsy_A 158 VPTGVRIADADRVRLGAHLAPGTTVMHEGFVNYNAGTLGASMVEGRISA-GVVVGDGSDVGGGASIMGTLSGGGTHVISI 236 (332)
T ss_dssp CCTTCEESCGGGBBTTEEECTTCEECTTCEECTTEEESSCCEECSEECT-TCEECTTCEECTTCEECSBCC---CCBCEE
T ss_pred cCCCcEECCcCEECCCCEECCCCEEccccEEEECCeECcCCEECCceec-ceEECCCCEECCCCEEcCCCCCCCccceEE
Confidence 3334444 333332 44555555555 23331 3444444444332222 24555555555544443211 111224666
Q ss_pred CCCCEEe-eeEECCCeEEcCCcc
Q 014953 383 GENTKIK-YEQLKPICHIVETKY 404 (415)
Q Consensus 383 g~~~~i~-~~~i~~~~~i~~~~~ 404 (415)
|++|.|. +|+| +++||+++.
T Consensus 237 GDnv~IGanAtI--gVtIGd~~i 257 (332)
T 3fsy_A 237 GKRCLLGANSGL--GISLGDDCV 257 (332)
T ss_dssp CTTCEECTTCEE--CSCBCSSCE
T ss_pred CCCCEECCCCEE--eeEECCCCE
Confidence 7777666 6666 666666664
|
| >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=1.3e-07 Score=93.32 Aligned_cols=103 Identities=17% Similarity=0.217 Sum_probs=72.7
Q ss_pred cCCCCCccccCccCCCeee-cCCccccceECCCCEEc-ceEEeeeEEccCcEECCCcEEe-ecEEeCCccccchhHHHhh
Q 014953 296 YDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLK-DTMMLGADFYETDAEVASL 372 (415)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~i-~~~~i~~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~-~sii~~~~~~~~~~~~~~~ 372 (415)
+++...+.+.+.|+.++.| +++.|.++.||++|.|+ ++.|.+++||++|.||+++.|. ++.|+++++|++++.+..
T Consensus 274 I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~~ig~~~~ig~~~~i~~- 352 (456)
T 2v0h_A 274 IDVNVIIEGNVKLGDRVKIGTGCVLKNVVIGNDVEIKPYSVLEDSIVGEKAAIGPFSRLRPGAELAAETHVGNFVEIKK- 352 (456)
T ss_dssp ECSSEEEEEEEEECTTCEECTTCEEEEEEECTTCEECSSCEEEEEEECTTCEECSSEEECTTCEECTTCEEEEEEEEES-
T ss_pred EcCCcEEcCCcEECCCCEECCCCEEEeEEEeCCCEEcCCeEEccCcCCCCcEECCccEECCCCEECCCCEECCCCEEec-
Confidence 3444444445556666666 66777788888888888 6888888888888888888887 578888877777766542
Q ss_pred hhCCCcceEeCCCCEEe------eeEECCCeEEcCCcccC
Q 014953 373 LAEGRVPVGIGENTKIK------YEQLKPICHIVETKYDS 406 (415)
Q Consensus 373 ~~~~~~~~~Ig~~~~i~------~~~i~~~~~i~~~~~~~ 406 (415)
+.||+++.+. +++||+++.|++++...
T Consensus 353 -------~~i~~~~~i~~~~~~~~~~Ig~~v~Ig~~~~i~ 385 (456)
T 2v0h_A 353 -------STVGKGSKVNHLTYVGDSEIGSNCNIGAGVITC 385 (456)
T ss_dssp -------CEECTTCEEEEEEEEESEEECTTCEECTTCEEE
T ss_pred -------cEECCCCEeccceeecCcEECCCcEECCceEEe
Confidence 3455555443 46888888888887543
|
| >2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=2.2e-07 Score=82.04 Aligned_cols=85 Identities=11% Similarity=-0.011 Sum_probs=65.9
Q ss_pred cceECCCCEEc-ceEEee----eEEccCcEECCCcEE----eecEEeCCccccchhHHHhh----h-----hC---CCcc
Q 014953 321 DSIISHGSFIT-SSFIEH----SVVGIRSRINANVHL----KDTMMLGADFYETDAEVASL----L-----AE---GRVP 379 (415)
Q Consensus 321 ~~~ig~~~~I~-~~~i~~----svig~~~~ig~~~~i----~~sii~~~~~~~~~~~~~~~----~-----~~---~~~~ 379 (415)
++.||++|.|+ ++.+.. +.||++|.|++.+.+ .+++|++++.|+.++.+... + ++ -..+
T Consensus 58 ~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~Ig~~~ii~~~~~~i~IG~~~~Ig~~~~I~~~~~h~~~~~~~~~~~~~~~~ 137 (215)
T 2wlg_A 58 TLFIADDVEIMGLVCSLHSDCSLQIQAKTTMGNGEITIAEKGKISIGKDCMLAHGYEIRNTDMHPIYSLENGERINHGKD 137 (215)
T ss_dssp EEEECTTCEEESEEEEECTTCEEEECTTCEECSEEEEECTTCEEEECTTCEECTTEEEESCCSSCEEETTTCBBCCCCCC
T ss_pred EEEECCCCEECCCeEEEcCCceEEEcCCCEECCEEEEEeCCCCEEECCCCEEcCCEEEECCCCcccccccccccccCCCC
Confidence 38899999998 577763 999999999995555 67899999888888877642 0 00 0014
Q ss_pred eEeCCCCEEe-eeEECCCeEEcCCccc
Q 014953 380 VGIGENTKIK-YEQLKPICHIVETKYD 405 (415)
Q Consensus 380 ~~Ig~~~~i~-~~~i~~~~~i~~~~~~ 405 (415)
++||++|.|. +|+|.++++|++++.+
T Consensus 138 v~Igd~v~IG~~~~I~~gv~Ig~~~vI 164 (215)
T 2wlg_A 138 VIIGNHVWLGRNVTILKGVCIPNNVVV 164 (215)
T ss_dssp EEECTTCEECTTCEECTTCEECSSCEE
T ss_pred eEECCCcEECCCCEECCCCEECCCCEE
Confidence 7899999998 9999999999998864
|
| >2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A | Back alignment and structure |
|---|
Probab=98.42 E-value=7.7e-07 Score=76.43 Aligned_cols=57 Identities=16% Similarity=0.076 Sum_probs=35.8
Q ss_pred ccCccCCCeee-cCCcc---ccceECCCCEEc-ceEEe-------------------eeEEccCcEECCCcEEe-ecEEe
Q 014953 304 TSRRNLPPSKI-DDSKI---VDSIISHGSFIT-SSFIE-------------------HSVVGIRSRINANVHLK-DTMML 358 (415)
Q Consensus 304 ~~~~i~~~~~i-~~~~i---~~~~ig~~~~I~-~~~i~-------------------~svig~~~~ig~~~~i~-~sii~ 358 (415)
....+++++++ .++.+ .++.||++|.|+ ++.|. .++||++|.||++|.|. ++.|+
T Consensus 73 ~~v~IG~~~~i~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~~~I~~gv~IG 152 (185)
T 2p2o_A 73 YNIHVGENFFMNFDGVILDVCEVRIGDHCFIGPGVHIYTATHPLDPHERNSGLEYGKPVVIGHNVWIGGRAVINPGVTIG 152 (185)
T ss_dssp TTEEECTTEEECSSEEEECSSCEEECTTCEECTTCEEECEECCSSHHHHHTCCBEECCEEECSSCEECTTCEECTTCEEC
T ss_pred CCEEECCeeEEcCCeEEEeccceEECCCcEEeCCCEEEcCCCcCChhhcccCccccCCeEEcCCeEECCCCEECCCCEEC
Confidence 34556666666 45555 356778888887 56663 46777777777776665 34444
Q ss_pred CC
Q 014953 359 GA 360 (415)
Q Consensus 359 ~~ 360 (415)
++
T Consensus 153 ~~ 154 (185)
T 2p2o_A 153 DN 154 (185)
T ss_dssp TT
T ss_pred CC
Confidence 44
|
| >3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=7.7e-07 Score=76.68 Aligned_cols=82 Identities=11% Similarity=0.005 Sum_probs=46.8
Q ss_pred cCccCCCeee-cCCccc---cceECCCCEEc-ceEE-------------------eeeEEccCcEECCCcEEe-ecEEeC
Q 014953 305 SRRNLPPSKI-DDSKIV---DSIISHGSFIT-SSFI-------------------EHSVVGIRSRINANVHLK-DTMMLG 359 (415)
Q Consensus 305 ~~~i~~~~~i-~~~~i~---~~~ig~~~~I~-~~~i-------------------~~svig~~~~ig~~~~i~-~sii~~ 359 (415)
+..+++++++ .++.+. ...||++|.|+ ++.| ..++||++|.||.+|.|. ++.|++
T Consensus 76 ~~~IG~~~~i~~~~~i~~~~~i~IG~~~~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~IG~ 155 (188)
T 3srt_A 76 NIHVGENFFANYDCIFLDVCKIEIGDNVMLAPNVQIYTAYHPIDAQLRNSGIEYGSPVKIGDNVWIGGGVIITPGITIGD 155 (188)
T ss_dssp TEEECTTEEECTTEEEECSSCEEECSSCEECTTCEEECEECCSSHHHHHTTEEEECCEEECSSCEECTTCEECTTCEECS
T ss_pred CeEECCcccccCceEEecCCceEECCeeEECCCcEEeeCCccCchhhccccceECCCcEECCCcEEcCCCEECCCcEECC
Confidence 3445555555 444443 23677777777 5655 356788888888777665 355555
Q ss_pred CccccchhHHHhhhhCCCcceEeCCCCEEeeeEECCCeEEcCCccc
Q 014953 360 ADFYETDAEVASLLAEGRVPVGIGENTKIKYEQLKPICHIVETKYD 405 (415)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~~i~~~~~i~~~~~~ 405 (415)
+ |.||.++++.+.+-...+.+|.-++.
T Consensus 156 ~-------------------~vIgagsvV~~dvp~~~v~~G~Pa~v 182 (188)
T 3srt_A 156 N-------------------VVIGAGSVVTKDIPPNTVAVGNPCRV 182 (188)
T ss_dssp S-------------------EEECTTCEECSCBCSSEEEETTTTEE
T ss_pred C-------------------CEECCCCEECcccCCCCEEEccCCEE
Confidence 5 66666666664433333444444433
|
| >3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=1.1e-06 Score=75.89 Aligned_cols=31 Identities=10% Similarity=-0.034 Sum_probs=19.4
Q ss_pred cCccCCCeee-cCCccc---cceECCCCEEc-ceEE
Q 014953 305 SRRNLPPSKI-DDSKIV---DSIISHGSFIT-SSFI 335 (415)
Q Consensus 305 ~~~i~~~~~i-~~~~i~---~~~ig~~~~I~-~~~i 335 (415)
+..+++++++ .++.|. .+.||++|.|+ ++.|
T Consensus 78 ~v~IG~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~I 113 (190)
T 3hjj_A 78 NIHVGKSFFANFNCVILDVCEVRIGDHCMFAPGVHI 113 (190)
T ss_dssp TEEECTTCEECTTCEEECSSCEEECTTCEECTTCEE
T ss_pred ceEECCceeeCCCeEEEeCCCeEECCceEEcCCcEE
Confidence 4555666666 555553 45677777777 5666
|
| >4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.33 E-value=8.1e-07 Score=78.24 Aligned_cols=41 Identities=15% Similarity=0.169 Sum_probs=32.4
Q ss_pred hhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 371 SLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 371 ~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
+.|+++ |.||.+|.|. ++.||+++.|++++.+.+.+-+++.
T Consensus 119 v~Igd~---v~IG~~a~I~~gv~IG~~~~IgagsvV~~dv~~~~~ 160 (219)
T 4e8l_A 119 IEIGND---VWIGRDVTIMPGVKIGDGAIIAAEAVVTKNVAPYSI 160 (219)
T ss_dssp EEECSS---CEECTTCEECTTCEECTTCEECTTCEECSCBCTTEE
T ss_pred cEECCC---eEECCCCEEcCCCEECCCCEECCCCEEcccCCCCeE
Confidence 345555 7788888887 7899999999999988888877764
|
| >1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=98.33 E-value=2.3e-06 Score=73.24 Aligned_cols=49 Identities=10% Similarity=-0.014 Sum_probs=28.8
Q ss_pred cCccCCCeee-cCCccc---cceECCCCEEc-ceEEe-------------------eeEEccCcEECCCcEEe
Q 014953 305 SRRNLPPSKI-DDSKIV---DSIISHGSFIT-SSFIE-------------------HSVVGIRSRINANVHLK 353 (415)
Q Consensus 305 ~~~i~~~~~i-~~~~i~---~~~ig~~~~I~-~~~i~-------------------~svig~~~~ig~~~~i~ 353 (415)
...++.++++ .++.|. .+.||++|.|+ ++.|. +++||++|.||++|.|.
T Consensus 72 ~v~IG~~~~I~~~~~i~~~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG~~v~Ig~~a~I~ 144 (182)
T 1ocx_A 72 NIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVIN 144 (182)
T ss_dssp TEEECSSEEECSSEEEECSSCEEECTTCEECTTCEEECEECCSSHHHHTTTCBEECCEEECTTCEECTTCEEC
T ss_pred CEEECCCcEEeCCeEEEeccceEEcCCcEEeCCcEEEeCCCccChhhcccCccccCCeEEeCCeEECCCCEEC
Confidence 4445555555 444442 46677777777 56652 46666666666655543
|
| >3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.33 E-value=1.2e-06 Score=79.83 Aligned_cols=60 Identities=10% Similarity=-0.000 Sum_probs=32.6
Q ss_pred CccccCccCCCeeec---CCccc-cceECCCCEEc-ceEEee---------eEEccCcEECCCcEEee-cEEeCC
Q 014953 301 PIYTSRRNLPPSKID---DSKIV-DSIISHGSFIT-SSFIEH---------SVVGIRSRINANVHLKD-TMMLGA 360 (415)
Q Consensus 301 ~~~~~~~i~~~~~i~---~~~i~-~~~ig~~~~I~-~~~i~~---------svig~~~~ig~~~~i~~-sii~~~ 360 (415)
.+.+++.|++++.|. ++.|. ++.||++|.|+ +++|.. ++||++|.||++|+|.+ +.|+++
T Consensus 166 ~I~p~a~IG~~v~I~hg~gvvIG~~~~IGd~v~I~~gvtIg~~~~~~~~r~~~IGd~v~IGaga~Il~gv~IG~~ 240 (287)
T 3mc4_A 166 DIHPAARLGSGLFLDHATGLVVGETAVVEDNVSILHGVTLGGTGKSSGDRHPKIRQGVLIGAGAKILGNIQVGQC 240 (287)
T ss_dssp EECTTCEECSSCEEESCTTCEECTTCEECSSCEEETTCEEEC-----CCCSCEECTTCEECTTCEEESSCEECTT
T ss_pred EECCCCEECCCeEEccCCCeEECCCeEECCCCEEcCCCEEcCCcccCCCcCCEECCCCEECCCCEECCCcEECCC
Confidence 344445555555552 23332 45666666665 455543 56777777776666654 445555
|
| >3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=1.8e-06 Score=74.79 Aligned_cols=31 Identities=16% Similarity=0.046 Sum_probs=15.4
Q ss_pred cCccCCCeee-cCCccc---cceECCCCEEc-ceEE
Q 014953 305 SRRNLPPSKI-DDSKIV---DSIISHGSFIT-SSFI 335 (415)
Q Consensus 305 ~~~i~~~~~i-~~~~i~---~~~ig~~~~I~-~~~i 335 (415)
++.|+.+++| .++.|. ...||++|.|+ ++.|
T Consensus 76 ~v~IG~~~~I~~~~~i~~~~~i~IG~~~~Ig~~~~I 111 (195)
T 3nz2_A 76 TIRIGDHTFINMNVVMLDGAPITIGDHVLIGPSTQF 111 (195)
T ss_dssp TEEECTTCEECTTEEEECSSCEEECTTCEECTTCEE
T ss_pred CeEECCCcEECcCCEEecCceEEECCCCEECCCCEE
Confidence 3444444444 344442 23566666666 4544
|
| >1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6 | Back alignment and structure |
|---|
Probab=98.31 E-value=1.4e-06 Score=79.55 Aligned_cols=35 Identities=17% Similarity=0.071 Sum_probs=26.8
Q ss_pred eEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 380 VGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 380 ~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
|.||.||.|. ++.||++++|++++.+.+.+..++.
T Consensus 216 v~IGaga~Ilggv~IG~~a~IGagsvV~~dVp~~s~ 251 (289)
T 1t3d_A 216 VMIGAGAKILGNIEVGRGAKIGAGSVVLQPVPPHTT 251 (289)
T ss_dssp CEECTTCEEESSCEECTTCEECTTCEECSCBCTTCE
T ss_pred eEECCCCEEecCcEECCCCEECCCCEEccCCCCCCE
Confidence 7888888876 7888888888888877777766653
|
| >1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=1.2e-06 Score=76.76 Aligned_cols=75 Identities=12% Similarity=0.179 Sum_probs=48.1
Q ss_pred eeEEccCcEECCCcEEee---cEEeCC-----ccccchh----------HH--HhhhhCCCcceEeCCCCEEe-eeEECC
Q 014953 337 HSVVGIRSRINANVHLKD---TMMLGA-----DFYETDA----------EV--ASLLAEGRVPVGIGENTKIK-YEQLKP 395 (415)
Q Consensus 337 ~svig~~~~ig~~~~i~~---sii~~~-----~~~~~~~----------~~--~~~~~~~~~~~~Ig~~~~i~-~~~i~~ 395 (415)
+++||++|.|+++++|.. ...+.+ ..++.++ .+ .+.++++ |.||.+|.|. ++.||+
T Consensus 60 ~v~IG~~~~Ig~gv~I~~~~~~h~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~v~Ig~~---v~IG~~a~I~~gv~Ig~ 136 (209)
T 1mr7_A 60 KLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGND---VWIGKDVVIMPGVKIGD 136 (209)
T ss_dssp CEEECSSCEECTTCEEECGGGCCCCSSCCCCGGGGCTTGGGGCCCGGGSCCCCCEEECSS---CEECTTCEECTTCEECT
T ss_pred CEEECCCCEEcCCCEEEeCCCcccccCccccceEECCcccccccccccccccCCcEECCC---CEEcCCCEEcCCCEECC
Confidence 468888888888887631 111111 1111111 11 1345555 7788888887 789999
Q ss_pred CeEEcCCcccCcccccccc
Q 014953 396 ICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 396 ~~~i~~~~~~~~~~~~~~~ 414 (415)
++.|++++.+.+.+-++++
T Consensus 137 ~~~Igags~V~~~v~~~~i 155 (209)
T 1mr7_A 137 GAIVAANSVVVKDIAPYML 155 (209)
T ss_dssp TCEECTTCEECSCBCTTEE
T ss_pred CCEEcCCCEEcCCCCCCeE
Confidence 9999999988888877764
|
| >3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A | Back alignment and structure |
|---|
Probab=98.29 E-value=8.3e-07 Score=82.10 Aligned_cols=19 Identities=5% Similarity=0.067 Sum_probs=10.0
Q ss_pred CceEEecCCHHHHHHHHHhhcCC
Q 014953 267 NDYWEDIGTIRSFFEANLALTAH 289 (415)
Q Consensus 267 ~g~~~di~t~~~y~~an~~~l~~ 289 (415)
+|+|. ...|..|...+...
T Consensus 128 pG~~a----l~~yRlah~L~~~~ 146 (313)
T 3q1x_A 128 PGFQA----VIVYRIAHVLYECG 146 (313)
T ss_dssp HHHHH----HHHHHHHHHHHHTT
T ss_pred cCHHH----HHHHHHHHHHHHcC
Confidence 45554 45555666555443
|
| >1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=1.3e-06 Score=78.89 Aligned_cols=28 Identities=11% Similarity=0.012 Sum_probs=25.0
Q ss_pred cCeEE--EEcCCeecccChHHHHHHHHHcC
Q 014953 129 IEDVL--ILSGDHLYRMDYMDFVQNHRQSG 156 (415)
Q Consensus 129 ~~~~l--v~~gD~i~~~~l~~~l~~h~~~~ 156 (415)
.+++| ++++|++...+|.++|.+|...+
T Consensus 19 ~EP~L~~~l~~~IL~~~~l~~aLa~~la~k 48 (267)
T 1ssq_A 19 NEPMLASFFHSTILKHQNLGGALSYLLANK 48 (267)
T ss_dssp HCHHHHHHHHHHTTTSSSHHHHHHHHHHHH
T ss_pred cCCHHHHHhcccccCCCCHHHHHHHHHhcc
Confidence 48899 99999999999999999998764
|
| >3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.6e-06 Score=80.08 Aligned_cols=15 Identities=20% Similarity=0.275 Sum_probs=6.5
Q ss_pred eEeCCCCEEe-eeEEC
Q 014953 380 VGIGENTKIK-YEQLK 394 (415)
Q Consensus 380 ~~Ig~~~~i~-~~~i~ 394 (415)
++||+||.|. +++|.
T Consensus 270 v~IGd~a~IGagsvV~ 285 (310)
T 3f1x_A 270 VTIGKGATVGGNIWVT 285 (310)
T ss_dssp CEECTTCEECSSCEEC
T ss_pred cEECCCCEECCCCEEC
Confidence 4444444443 44444
|
| >1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=4.2e-06 Score=72.73 Aligned_cols=31 Identities=13% Similarity=-0.028 Sum_probs=17.4
Q ss_pred cCccCCCeee-cCCccc---cceECCCCEEc-ceEE
Q 014953 305 SRRNLPPSKI-DDSKIV---DSIISHGSFIT-SSFI 335 (415)
Q Consensus 305 ~~~i~~~~~i-~~~~i~---~~~ig~~~~I~-~~~i 335 (415)
...|+.++++ .++.+. .+.||++|.|+ ++.|
T Consensus 75 ~i~IG~~~~I~~~~~i~~~~~i~IG~~v~Ig~~v~I 110 (203)
T 1krr_A 75 NIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTL 110 (203)
T ss_dssp TEEECSSCEECSCEEEECSSCEEECSSCEECSSCEE
T ss_pred CeEECCeeEECCccEEecccceEECCCCEECCCCEE
Confidence 4445555555 344443 35677777777 5555
|
| >3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A | Back alignment and structure |
|---|
Probab=98.17 E-value=4.7e-06 Score=72.43 Aligned_cols=31 Identities=10% Similarity=0.055 Sum_probs=16.3
Q ss_pred cCccCCCeee-cCCccc---cceECCCCEEc-ceEE
Q 014953 305 SRRNLPPSKI-DDSKIV---DSIISHGSFIT-SSFI 335 (415)
Q Consensus 305 ~~~i~~~~~i-~~~~i~---~~~ig~~~~I~-~~~i 335 (415)
++.++++++| .++.|. .+.||++|.|+ ++.|
T Consensus 74 ~~~IG~~~~I~~~~~i~~~~~v~IG~~v~Ig~~~~I 109 (199)
T 3ftt_A 74 NVKLGKNVYVNTNCYFMDGGQITIGDNVFIGPNCGF 109 (199)
T ss_dssp TEEECSSEEECTTEEEECSSCEEECSSEEECTTCEE
T ss_pred CcEECCCeEECCCeEEecCCEEEECCCCEECCCCEE
Confidence 3445555555 444442 34666666666 4555
|
| >1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=8.3e-06 Score=71.37 Aligned_cols=40 Identities=13% Similarity=0.137 Sum_probs=32.1
Q ss_pred hhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 372 LLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 372 ~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
.|+++ |.||.+|.|. ++.||+++.|++++.+.+.+.++++
T Consensus 112 ~IG~~---v~IG~~a~I~~gv~Ig~~~~IgagsvV~~~vp~~~~ 152 (212)
T 1xat_A 112 LIGHE---VWIGTEAMFMPGVRVGHGAIIGSRALVTGDVEPYAI 152 (212)
T ss_dssp EECTT---CEECTTCEECTTCEECTTCEECTTCEECSCBCTTEE
T ss_pred EECCC---CEECCCCEEeCCCEECCCCEECCCCEEcccCCCCcE
Confidence 44555 7788888887 8999999999999998888887764
|
| >4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A | Back alignment and structure |
|---|
Probab=98.08 E-value=1.3e-06 Score=77.34 Aligned_cols=28 Identities=18% Similarity=0.323 Sum_probs=16.9
Q ss_pred cceECCCCEEcceEEeeeEEccCcEECCCcEE
Q 014953 321 DSIISHGSFITSSFIEHSVVGIRSRINANVHL 352 (415)
Q Consensus 321 ~~~ig~~~~I~~~~i~~svig~~~~ig~~~~i 352 (415)
+++|+++|.|++ +++||++|.|+++++|
T Consensus 54 ~~vI~~~~~Ig~----~v~IG~~~~Ig~~v~i 81 (220)
T 4hur_A 54 DQVLYHYEVIGD----KLIIGRFCSIGPGTTF 81 (220)
T ss_dssp GGEESCCTTTCC----CEEECSSCEECTTCEE
T ss_pred CeEEeCCCEECC----CeEECCCCEECCCCEE
Confidence 344555554442 4677777777777775
|
| >3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=97.98 E-value=1.4e-05 Score=70.11 Aligned_cols=14 Identities=21% Similarity=0.237 Sum_probs=5.9
Q ss_pred eEEccCcEECCCcE
Q 014953 338 SVVGIRSRINANVH 351 (415)
Q Consensus 338 svig~~~~ig~~~~ 351 (415)
+.||++|.|++++.
T Consensus 59 v~IG~~~~I~~~v~ 72 (212)
T 3eev_A 59 LVIGSFCSIGSGAV 72 (212)
T ss_dssp EEECSSCEECTTCE
T ss_pred cEECCCCEECCCCE
Confidence 34444444444443
|
| >2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=97.86 E-value=1.8e-05 Score=74.80 Aligned_cols=52 Identities=15% Similarity=0.087 Sum_probs=29.8
Q ss_pred eeEEccCcEECCCcEEee---------cEEeCCccccchhHHHhhhhCCCcceEeCCCCEEeeeEECCCeEEcCCcccCc
Q 014953 337 HSVVGIRSRINANVHLKD---------TMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKYEQLKPICHIVETKYDSS 407 (415)
Q Consensus 337 ~svig~~~~ig~~~~i~~---------sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~~i~~~~~i~~~~~~~~ 407 (415)
+++||++|.|++++.|.+ ++|+++ |.||.||. .++.||+++.|++++.+.+
T Consensus 264 ~vvIGdnv~Ig~ga~I~g~l~g~~~~~VvIGdn-------------------v~IGagAv-~GV~IGdgavIGAGsVVt~ 323 (387)
T 2rij_A 264 SAIVGEGSDVGGGASILGVLSGTSGNAISVGKA-------------------CLLGANSV-TGIPLGDNCIVDAGIAVLE 323 (387)
T ss_dssp TCEECTTCEECTTCEECCBCSSTTCCBCEECTT-------------------CEECTTCE-ECSCBCTTCEECTTCEECT
T ss_pred CCEECCCCEECCCceEcceecCCCccCeEEeCC-------------------CEECCCCc-CCcEECCCCEECCCCEECC
Confidence 466777777777665332 445555 55555555 5555555555555555444
Q ss_pred c
Q 014953 408 T 408 (415)
Q Consensus 408 ~ 408 (415)
.
T Consensus 324 d 324 (387)
T 2rij_A 324 G 324 (387)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00041 Score=69.08 Aligned_cols=223 Identities=17% Similarity=0.193 Sum_probs=119.6
Q ss_pred cceEEEEEcCCCCCcccccccCCcccceeeC---Ccceeehhehhhhhc-cCCc-EEEEEccc-ChhHHHHHHHhhccCC
Q 014953 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIG---GAYRLIDVPMSNCIN-SGIN-KVYILTQY-NSASLNRHLARAYNYG 80 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~llpv~---g~~pli~~~l~~l~~-~gi~-~I~vv~~~-~~~~i~~~l~~~~~~~ 80 (415)
.++..|+||||.||||+ ...||.++|++ ++ +++++.++++.+ .|.. .++|-++. .++...+++.+ +.+.
T Consensus 113 ~kvavvllaGGlGTRLG---~~~pK~~lpv~~~s~k-s~lql~~e~i~~~~g~~iPl~IMTS~~T~~~T~~~~~~-fgl~ 187 (630)
T 3ogz_A 113 CKTVFVLVAGGLGERLG---YSSIKVSLPVETATNT-TYLAYYLRWAQRVGGKEVPFVIMTSDDTHDRTLQLLRE-LQLE 187 (630)
T ss_dssp GGEEEEEECCCEEGGGT---EEEEGGGSBSCTTTCC-BHHHHHHHHHHHHHCTTCCEEEEECTTTHHHHHHHHHH-TTCC
T ss_pred hhceEEEecCCcccccC---CCCCcccceecCCCCC-cHHHHHHHHHHHHhCCCCcEEEEecccchHHHHHHHHH-hCCC
Confidence 37889999999999997 78999999997 88 999999999986 3432 45555554 45788888876 4221
Q ss_pred CC-c-ccCCceEEEecCcc-C-C-CCCC--CccccchHHHHHHhh--h------------------hhcCCCCCCcCeEE
Q 014953 81 SG-V-TFGDGCVEVLAATQ-T-P-GEAG--KRWFQGTADAVRQFH--W------------------LFEDPRNKVIEDVL 133 (415)
Q Consensus 81 ~~-~-~~~~~~v~i~~~~~-~-~-~~~~--~~~~~Gt~~al~~~~--~------------------~i~~~~~~~~~~~l 133 (415)
.. . -|....+-.+.... . . .+.+ .-.+.|.|+-..... . .++++...+.+.+.
T Consensus 188 ~~~V~~F~Q~~~P~i~~~~g~l~l~~~~~i~~~P~GhGdv~~aL~~sG~~~~~~~~~~~~~~~~~~lLd~l~~~Gieyi~ 267 (630)
T 3ogz_A 188 VPNLHVLKQGQVFCFADSAAHLALDETGKLLRKPHGHGDVHSLIYNATVKRDVVPDSGDGTATAQPLVNDWLAAGYESIV 267 (630)
T ss_dssp CTTEEEEECCCEECBSSTTCCBCBCTTSSBCEECCCTTHHHHHHHHCBC--------------CCBHHHHHHHTTCCEEE
T ss_pred cccEEEEEcCCEEEEecCCCceeecCCCcccCCCCCCHHHHHHHHHcCCCcccccccccccccHHHHHHHHHHcCCEEEE
Confidence 11 0 01111111111000 0 0 0001 112345555333221 1 22221112468999
Q ss_pred EEcCCe-ecccChHHHHHHHHHcCCcEEEEEEEcCCCcCCcccEEEE--CCCCCe-E-EEEEcCCccccccccc--cccc
Q 014953 134 ILSGDH-LYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKI--NNEGRV-L-SFSEKPKGKDLKAMAV--DTTV 206 (415)
Q Consensus 134 v~~gD~-i~~~~l~~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~--d~~~~v-~-~~~ek~~~~~~~~~~~--~~~~ 206 (415)
+.+.|. +...---.++.++.++++++.+-+.+... ...-|.+.. ..+|+. . .+.|....+..-.... +...
T Consensus 268 v~~vDN~L~~~~DP~~lG~~~~~~~d~~~kvv~r~p--~E~vG~l~~~~~~dGk~~~v~vVEYsei~~~~~~~~~~~g~~ 345 (630)
T 3ogz_A 268 FIQDTNAGATITIPISLALSAEHSLDMNFTCIPRVP--KEPIGLLCRTKKNSGDPWLVANVEYNVFAEVSRALNKDGGDE 345 (630)
T ss_dssp EECTTBTTHHHHHHHHHHHHHHTTCSEEEEEECCCS--SCSSCEEEEEESSTTSCCEEEEECHHHHHHHHHHC-------
T ss_pred EEccCCccccccCHHHhHHHHhcCCCEEEEEEECCC--CcceeeEEEEecCCCceeeeeEEEeccCCHhHhhccCCCccc
Confidence 999999 43333345788888899999888776432 344565554 245666 2 2344221110000000 0000
Q ss_pred ccccccccccccceeeeeEEEEeHHHHHHHHhh
Q 014953 207 LGLSKQEAEEKPYIASMGVYLFKKEILLNLLRW 239 (415)
Q Consensus 207 ~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~ 239 (415)
+ . .....+.+..++...+|+-+.+.+.+..
T Consensus 346 ~--~-~~~~~~~f~GNtNnl~~~L~a~~~~l~~ 375 (630)
T 3ogz_A 346 V--S-DPTGFSPFPGSVNTLVFKLSSYVDRLRE 375 (630)
T ss_dssp --------CCCSSCEEEEEEEEEHHHHHHHHHH
T ss_pred c--c-cccccccccccceeeeEEHHHHHHHHHh
Confidence 0 0 0000133455889999999855555553
|
| >4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00021 Score=62.77 Aligned_cols=27 Identities=19% Similarity=0.156 Sum_probs=20.9
Q ss_pred ceEeCCCCEEe-eeEECCCeEEcCCccc
Q 014953 379 PVGIGENTKIK-YEQLKPICHIVETKYD 405 (415)
Q Consensus 379 ~~~Ig~~~~i~-~~~i~~~~~i~~~~~~ 405 (415)
+++||++|.|. +|+|.++++|++++.+
T Consensus 118 ~v~Igd~v~IG~~a~I~~gv~IG~~~~I 145 (219)
T 4e8l_A 118 DIEIGNDVWIGRDVTIMPGVKIGDGAII 145 (219)
T ss_dssp CEEECSSCEECTTCEECTTCEECTTCEE
T ss_pred CcEECCCeEECCCCEEcCCCEECCCCEE
Confidence 37788888887 8888888888887753
|
| >1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00028 Score=61.61 Aligned_cols=25 Identities=16% Similarity=0.076 Sum_probs=15.4
Q ss_pred eEeCCCCEEe-eeEECCCeEEcCCcc
Q 014953 380 VGIGENTKIK-YEQLKPICHIVETKY 404 (415)
Q Consensus 380 ~~Ig~~~~i~-~~~i~~~~~i~~~~~ 404 (415)
++||++|.|. +|+|.++++|++++.
T Consensus 111 v~IG~~v~IG~~a~I~~gv~Ig~~~~ 136 (212)
T 1xat_A 111 TLIGHEVWIGTEAMFMPGVRVGHGAI 136 (212)
T ss_dssp EEECTTCEECTTCEECTTCEECTTCE
T ss_pred eEECCCCEECCCCEEeCCCEECCCCE
Confidence 5666666665 666666666666653
|
| >1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00039 Score=60.56 Aligned_cols=14 Identities=21% Similarity=0.387 Sum_probs=5.8
Q ss_pred eEEccCcEECCCcE
Q 014953 338 SVVGIRSRINANVH 351 (415)
Q Consensus 338 svig~~~~ig~~~~ 351 (415)
++||++|.||.++.
T Consensus 114 v~Ig~~v~IG~~a~ 127 (209)
T 1mr7_A 114 TIIGNDVWIGKDVV 127 (209)
T ss_dssp EEECSSCEECTTCE
T ss_pred cEECCCCEEcCCCE
Confidence 33444444443333
|
| >2i5e_A Hypothetical protein MM_2497; APC86122, methanosarcina mazei GO1, hypothetic protein, STRU genomics, PSI-2, protein structure initiative; 2.10A {Methanosarcina mazei} SCOP: c.68.1.21 | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00034 Score=61.10 Aligned_cols=105 Identities=21% Similarity=0.212 Sum_probs=69.1
Q ss_pred cceEEEEEc--CCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEE-EEEcccChhHHHHHHHhhccCCCCc
Q 014953 7 RTVAAVILG--GGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKV-YILTQYNSASLNRHLARAYNYGSGV 83 (415)
Q Consensus 7 ~~~~aVILA--aG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I-~vv~~~~~~~i~~~l~~~~~~~~~~ 83 (415)
..|.+||++ +...|||.|. ..+......++ ||++|+++.+..++++.+ ++++++.. .. .+
T Consensus 2 ~~~~~vip~k~g~~KtRL~~~---l~~~~~~~l~~-~ll~~vl~~l~~~~~~~v~vvv~~~~~--~~-----~~------ 64 (211)
T 2i5e_A 2 NAMRAVIPYKKAGAKSRLSPV---LSLQEREEFVE-LMLNQVISSLKGAGIEQVDILSPSVYG--LE-----EM------ 64 (211)
T ss_dssp CCCEEEEECCCTTTTGGGTTT---SCHHHHHHHHH-HHHHHHHHHHHHTTCSEEEEEESSCTT--CS-----SC------
T ss_pred CceEEEEEeCCCCCccccCcc---CCHHHHHHHHH-HHHHHHHHHHHHcCCceEEEEEcCcHH--HH-----hh------
Confidence 458899999 6667777521 11222225678 999999999999999999 88887642 11 11
Q ss_pred ccCCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHH
Q 014953 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQ 150 (415)
Q Consensus 84 ~~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~ 150 (415)
++ +.++... .|.+.+++.+...+ .+.++++.||+ +...+ +..+++
T Consensus 65 -~~---~~~v~~~-----------~gl~~sl~~a~~~~-------~~~vlvi~~D~P~l~~~~i~~l~~ 111 (211)
T 2i5e_A 65 -TE---ARVLLDE-----------KDLNEALNRYLKEA-------EEPVLIVMADLPLLSPEHIKEISS 111 (211)
T ss_dssp -CS---SEEEECC-----------SCHHHHHHHHHHHC-------CSCEEEECSCCTTCCHHHHHHHTT
T ss_pred -cC---CEEEECC-----------CCHHHHHHHHHHhc-------CCCEEEEcCCcCCCCHHHHHHHHc
Confidence 11 2232211 28899999987655 26899999999 44443 566655
|
| >1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A* | Back alignment and structure |
|---|
Probab=88.12 E-value=6.6 Score=34.00 Aligned_cols=100 Identities=13% Similarity=0.165 Sum_probs=63.8
Q ss_pred ceeeCCcceeehhehhhhhccCCc--EEEEEcccChhHHHHHHHhhccCCCCcccCCceEEEecCc--------cCCCCC
Q 014953 33 AVPIGGAYRLIDVPMSNCINSGIN--KVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAAT--------QTPGEA 102 (415)
Q Consensus 33 llpv~g~~pli~~~l~~l~~~gi~--~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~--------~~~~~~ 102 (415)
.+|.-|....|..+|+.+.++... +|+||-....+...+.+.+... ...+.++... ..
T Consensus 6 iIp~yn~~~~l~~~l~Sl~~q~~~~~eiivvDd~S~d~t~~~~~~~~~--------~~~i~~i~~~~~~~~~~~~n---- 73 (255)
T 1qg8_A 6 IMTSYNKSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLN--------DNRVRFYQSDISGVKERTEK---- 73 (255)
T ss_dssp EEEESSCTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGG--------STTEEEEECCCCSHHHHHSS----
T ss_pred EEEcCCCHHHHHHHHHHHHhccCCceEEEEEECCCCchHHHHHHHHhh--------cCCEEEEecccccccccccc----
Confidence 456656546788888888765443 5666655444444454433211 1124554433 22
Q ss_pred CCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHHHHc
Q 014953 103 GKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQS 155 (415)
Q Consensus 103 ~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h~~~ 155 (415)
.|.+.+...++...+ .+.++++.+|.+...+ +..+++.+.+.
T Consensus 74 -----~G~~~a~N~gi~~a~------g~~i~~lD~Dd~~~~~~l~~~~~~~~~~ 116 (255)
T 1qg8_A 74 -----TRYAALINQAIEMAE------GEYITYATDDNIYMPDRLLKMVRELDTH 116 (255)
T ss_dssp -----CHHHHHHHHHHHHCC------CSEEEEEETTEEECTTHHHHHHHHHHHC
T ss_pred -----cCHHHHHHHHHHHcC------CCEEEEeCCCCccChHHHHHHHHHHHhC
Confidence 488888888877654 5899999999988877 78888877765
|
| >3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=87.47 E-value=2.6 Score=36.21 Aligned_cols=107 Identities=13% Similarity=0.152 Sum_probs=63.4
Q ss_pred ceeeCCcceeehhehhhhhccCCc--EEEEEcccChhHHHHHHHhhccCCCCcccCCceEEEecCccCCCCCCCccccch
Q 014953 33 AVPIGGAYRLIDVPMSNCINSGIN--KVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGT 110 (415)
Q Consensus 33 llpv~g~~pli~~~l~~l~~~gi~--~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~Gt 110 (415)
.+|.-|....|..+|+.+.+.... +|+||-....+...+.+.+... .. ..+.++.. +. .|.
T Consensus 10 iIp~yn~~~~l~~~l~Sl~~q~~~~~eiIvvDd~S~d~t~~~~~~~~~-----~~--~~i~~i~~-~n---------~G~ 72 (240)
T 3bcv_A 10 IVPIYNVEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAA-----QY--PNIKVIHK-KN---------AGL 72 (240)
T ss_dssp EEEESSCTTTHHHHHHHHHTCSSSSEEEEEEECCCSSSHHHHHHHHHH-----HC--SSEEEEEC-CC---------CCH
T ss_pred EEecCCCHHHHHHHHHHHHhCcCCCeEEEEEECCCCcCHHHHHHHHHh-----hC--CCEEEEEC-CC---------CCh
Confidence 344445435677777777665433 6666644322222222221100 00 11445532 22 488
Q ss_pred HHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHHHHcCCcEEEE
Q 014953 111 ADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITIS 162 (415)
Q Consensus 111 ~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h~~~~~~~ti~ 162 (415)
+.+...++...+ .+.++++.+|.+...+ |..+++...+.+.++.+.
T Consensus 73 ~~a~N~g~~~a~------g~~i~~lD~Dd~~~~~~l~~l~~~~~~~~~~~v~~ 119 (240)
T 3bcv_A 73 GMACNSGLDVAT------GEYVAFCDSDDYVDSDMYMTMYNVAQKYTCDAVFT 119 (240)
T ss_dssp HHHHHHHHHHCC------SSEEEECCTTCCCCTTHHHHHHHHHHHHTCSEEEC
T ss_pred HHHHHHHHHHcC------CCEEEEECCCCcCCHHHHHHHHHHHHhcCCCEEEE
Confidence 999988887764 5899999999988887 788888777766665443
|
| >3cgx_A Putative nucleotide-diphospho-sugar transferase; YP_389115.1, joint center for structural genomics; 1.90A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
Probab=86.01 E-value=1.6 Score=38.43 Aligned_cols=87 Identities=7% Similarity=-0.019 Sum_probs=56.8
Q ss_pred eeehhehhhhhccCCcEEEEEcccChhHHH--HHHHhhccCCCCcccCCceEEEecCccCCCCCCCccccchHHHHHHhh
Q 014953 41 RLIDVPMSNCINSGINKVYILTQYNSASLN--RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFH 118 (415)
Q Consensus 41 pli~~~l~~l~~~gi~~I~vv~~~~~~~i~--~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~ 118 (415)
+|+.++++.+...+...++++++.....+. ..+. +.+ +.+.+ |. ..|.+.++..+.
T Consensus 38 ~ll~~tl~~~~~~~~~~vvvvt~~~~~~~~~~~~~~-----~~~-------~~~~~--q~--------~~gLg~rl~~a~ 95 (242)
T 3cgx_A 38 HFVQDMLQGLARLHADLHICYVPGDADLPEKFKAWL-----GPQ-------HMFAA--QQ--------GLDLGERMKHAM 95 (242)
T ss_dssp HHHHHHHHHHTTSSSEEEEEECCCCTTHHHHHHHHH-----CTT-------SEEEE--CC--------SSSHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCEEEEEcCCchhhhhhhhhhc-----cCC-------cEEec--CC--------CCCHHHHHHHHH
Confidence 799999999999988878777776554432 2221 111 11221 21 148899999888
Q ss_pred hhh-cCCCCCCcCeEEEEcCCe--ecccChHHHHHHHH
Q 014953 119 WLF-EDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHR 153 (415)
Q Consensus 119 ~~i-~~~~~~~~~~~lv~~gD~--i~~~~l~~~l~~h~ 153 (415)
..+ .. ..+.++++.+|+ +...++.++++.+.
T Consensus 96 ~~~~~~----~~~~vliigaD~P~L~~~~l~~a~~~l~ 129 (242)
T 3cgx_A 96 QKAFDD----GYDRVVLMGSDIPDYPCELVQKALNDLQ 129 (242)
T ss_dssp HHHHHT----TCSEEEEECSSCTTCCHHHHHHHHHHTT
T ss_pred HHHHhC----CCCeEEEEcCCCCCCCHHHHHHHHHHhc
Confidence 765 21 147899999999 44556788877554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 415 | ||||
| d1yp2a2 | 307 | c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltr | 2e-75 | |
| d1fxoa_ | 292 | c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa | 2e-33 | |
| d1lvwa_ | 295 | c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacteri | 2e-30 | |
| d1mc3a_ | 291 | c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} | 7e-30 | |
| d1tzfa_ | 259 | c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransf | 8e-23 | |
| d2icya2 | 378 | c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 | 8e-22 | |
| d1yp2a1 | 135 | b.81.1.4 (A:317-451) Glucose-1-phosphate adenylylt | 2e-15 | |
| d1jyka_ | 229 | c.68.1.13 (A:) CTP:phosphocholine cytidylytransfer | 4e-12 | |
| d1g97a2 | 250 | c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate | 3e-09 | |
| d2cu2a2 | 268 | c.68.1.20 (A:1-268) Putative mannose-1-phosphate g | 3e-06 | |
| d2oi6a2 | 248 | c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate | 3e-05 | |
| d2dpwa1 | 231 | c.68.1.19 (A:1-231) Uncharacterized protein TTHA01 | 0.003 |
| >d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Score = 235 bits (600), Expect = 2e-75
Identities = 183/304 (60%), Positives = 237/304 (77%), Gaps = 7/304 (2%)
Query: 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYN 65
+R+V +ILGGGAGTRLYPLTK+RAKPAVP+G YRLID+P+SNC+NS I+K+Y+LTQ+N
Sbjct: 9 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFN 68
Query: 66 SASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPR 125
SASLNRHL+RAY G +G VEVLAA Q+P WFQGTADAVRQ+ WLFE+
Sbjct: 69 SASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPD--WFQGTADAVRQYLWLFEEHT 126
Query: 126 NKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRV 185
+ LIL+GDHLYRMDY F+Q HR++ ADIT++ LPMD+ RA+ FGLMKI+ EGR+
Sbjct: 127 V---LEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRI 183
Query: 186 LSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAN 245
+ F+EKP+G+ L+AM VDTT+LGL + A+E P+IASMG+Y+ K+++LNLLR +FP AN
Sbjct: 184 IEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGAN 243
Query: 246 DFGSEIIPASANEQF-LKAYLFNDYWEDIGTIRSFFEANLALTAHP-PMFSFYDATKPIY 303
DFGSE+IP + + ++AYL++ YWEDIGTI +F+ ANL +T P P FSFYD + PIY
Sbjct: 244 DFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIY 303
Query: 304 TSRR 307
T R
Sbjct: 304 TQPR 307
|
| >d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Pseudomonas aeruginosa [TaxId: 287]
Score = 124 bits (313), Expect = 2e-33
Identities = 54/278 (19%), Positives = 102/278 (36%), Gaps = 51/278 (18%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASL- 69
+IL GG+GTRL+P T +K +P+ +I P+S + +GI ++ I++
Sbjct: 4 GIILAGGSGTRLHPATLAISKQLLPVYD-KPMIYYPLSTLMLAGIREILIISTPQDTPRF 62
Query: 70 NRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVI 129
+ L N+G +++ A Q G A A
Sbjct: 63 QQLLGDGSNWG---------LDLQYAVQP-------SPDGLAQAFLIGE-----SFIGND 101
Query: 130 EDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFS 189
L+L + Y D+ + + + Q ++ + D +G+++ + G+ +S
Sbjct: 102 LSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLD--PERYGVVEFDQGGKAISLE 159
Query: 190 EKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA--NDF 247
EKP E K A G+Y + +++ +++ R P+
Sbjct: 160 EKPL---------------------EPKSNYAVTGLYFYDQQV-VDIARDLKPSPRGELE 197
Query: 248 GSEIIPASANEQFLKAYLFND--YWEDIGTIRSFFEAN 283
+++ A L + W D GT S EA
Sbjct: 198 ITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAG 235
|
| >d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 295 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 116 bits (292), Expect = 2e-30
Identities = 63/279 (22%), Positives = 100/279 (35%), Gaps = 53/279 (18%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
++L GG+GTRLYP+T+ +K +PI +I P+S + +GI + I++ L
Sbjct: 6 GIVLAGGSGTRLYPITRAVSKQLLPIYD-KPMIYYPLSVLMLAGIRDILIISTPRDLPLY 64
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIE 130
R L G G FG V Q +G ADA D +
Sbjct: 65 RDL-----LGDGSQFG---VRFSYRVQE-------EPRGIADAFIVGKDFIGDS-----K 104
Query: 131 DVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSE 190
L+L + Y + + ++ I + D FG+++ ++EGRV+S E
Sbjct: 105 VALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYYVRD--PRPFGVVEFDSEGRVISIEE 162
Query: 191 KPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSE 250
KP K G+Y + +++ R +D G
Sbjct: 163 KPS---------------------RPKSNYVVPGLYFYDNQVVEIARRIE---PSDRGEL 198
Query: 251 IIPASANEQFLKAYL------FNDYWEDIGTIRSFFEAN 283
I + E L W D GT EA+
Sbjct: 199 EITSVNEEYLRMGKLRVELMGRGMAWLDTGTHDGLLEAS 237
|
| >d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} Length = 291 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RffH species: Escherichia coli [TaxId: 562]
Score = 114 bits (288), Expect = 7e-30
Identities = 59/280 (21%), Positives = 106/280 (37%), Gaps = 55/280 (19%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
+IL GG+GTRL+P+T+ +K +PI +I P+S + +GI ++ I+T
Sbjct: 4 GIILAGGSGTRLHPITRGVSKQLLPIYD-KPMIYYPLSVLMLAGIREILIITTPEDKGYF 62
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIE 130
+ L G G FG +++ A Q + G A A
Sbjct: 63 QRL-----LGDGSEFG---IQLEYAEQPSPD-------GLAQAFIIGETFLNGE-----P 102
Query: 131 DVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSE 190
L+L + + + +++ T+ + D FG+++ ++ R +S E
Sbjct: 103 SCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQVMD--PERFGVVEFDDNFRAISLEE 160
Query: 191 KPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSE 250
KPK + K A G+Y + ++ + + P+ E
Sbjct: 161 KPK---------------------QPKSNWAVTGLYFYDSKV-VEYAKQVKPSER---GE 195
Query: 251 IIPASANEQFLKAYLFN-------DYWEDIGTIRSFFEAN 283
+ S N+ +L+A W D GT S EA+
Sbjct: 196 LEITSINQMYLEAGNLTVELLGRGFAWLDTGTHDSLIEAS 235
|
| >d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: Glucose-1-phosphate cytidylyltransferase RfbF species: Salmonella typhimurium [TaxId: 90371]
Score = 94.8 bits (234), Expect = 8e-23
Identities = 42/273 (15%), Positives = 82/273 (30%), Gaps = 32/273 (11%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
AVIL GG GTRL T + KP V IGG ++ M GI I Y +
Sbjct: 5 AVILAGGLGTRLSEETIVKPKPMVEIGG-KPILWHIMKMYSVHGIKDFIICCGYKGYVIK 63
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIE 130
+ A + + S VTF R +
Sbjct: 64 EYFANYFLHMSDVTFHMAE---------------------------NRMEVHHKRVEPWN 96
Query: 131 DVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSE 190
L+ +GD + V + + + + G+ + +
Sbjct: 97 VTLVDTGDSSMTGGRLKRVAEYVKDDEAFLFTYGDGVADLDIKATIDFHKAHGKKATLTA 156
Query: 191 KPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSE 250
A+ + + +++ + + + G ++ ++ + + E
Sbjct: 157 TFPPGRFGALDIQAGQVRSFQEKPKGDGAMINGGFFVLNPSVIDLIDNDAT----TWEQE 212
Query: 251 IIPASANEQFLKAYLFNDYWEDIGTIRSFFEAN 283
+ A + L A+ +W+ + T+R
Sbjct: 213 PLMTLAQQGELMAFEHPGFWQPMDTLRDKVYLE 245
|
| >d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 378 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: UDP-glucose pyrophosphorylase 2 (UDPGP 2) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 93.8 bits (233), Expect = 8e-22
Identities = 33/264 (12%), Positives = 83/264 (31%), Gaps = 41/264 (15%)
Query: 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCI------NSGINKVYILT 62
+ + L GG GT + K + + +D+ + + V + +
Sbjct: 75 LVVLKLNGGLGTT---MGCTGPKSVIEVRDGLTFLDLIVIQIENLNNKYGCKVPLVLMNS 131
Query: 63 QYNSASLNRHLARAYNYGSGVTF----------GDGCVEVLAATQTPGEAGKRWFQGTAD 112
++ + + N + D V + +T E + G D
Sbjct: 132 FNTHDDTHKIVEKYTNSNVDIHTFNQSKYPRVVADEFVPWPSKGKTDKEG--WYPPGHGD 189
Query: 113 AVRQFHW--LFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSR 170
+ ++ E V + + D+L + + +++ Q+ + + P +
Sbjct: 190 VFPALMNSGKLDTFLSQGKEYVFVANSDNLGAIVDLTILKHLIQNKNEYCMEVTPKTLAD 249
Query: 171 ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKK 230
L+ + ++L ++ P +++ ++ EK I +
Sbjct: 250 VKGGTLISYEGKVQLLEIAQVPDEH-------------VNEFKSIEKFKIFNTNNLWVNL 296
Query: 231 EILLNLLRWRFPTANDFGSEIIPA 254
+ + L+ A+ EIIP
Sbjct: 297 KAIKKLVE-----ADALKMEIIPN 315
|
| >d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 135 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Score = 70.5 bits (172), Expect = 2e-15
Identities = 41/91 (45%), Positives = 60/91 (65%)
Query: 309 LPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAE 368
LPPSK+ D+ + DS+I G I + I HSVVG+RS I+ ++D++++GAD+YETDA+
Sbjct: 2 LPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDAD 61
Query: 369 VASLLAEGRVPVGIGENTKIKYEQLKPICHI 399
L A+G VP+GIG+N IK + I
Sbjct: 62 RKLLAAKGSVPIGIGKNCHIKRAIIDKNARI 92
|
| >d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CTP:phosphocholine cytidylytransferase LicC species: Streptococcus pneumoniae [TaxId: 1313]
Score = 63.1 bits (152), Expect = 4e-12
Identities = 29/280 (10%), Positives = 74/280 (26%), Gaps = 67/280 (23%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
A+IL G GTRL PLT+ K V + LI+ + GIN + I+ Y +
Sbjct: 6 AIILAAGLGTRLRPLTENTPKALVQVNQ-KPLIEYQIEFLKEKGINDIIIIVGYLKEQFD 64
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIE 130
+ A + + ++
Sbjct: 65 YLKEKYGVR--------------------------LVFNDKYADYNNFYSLYLVKEELAN 98
Query: 131 DVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSE 190
+I + ++L++ + + + + ++ + ++ +V
Sbjct: 99 SYVIDADNYLFKNMFRNDLTRST---------YFSVYREDCTNEWFLVYGDDYKVQDIIV 149
Query: 191 KPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEI------LLNLLRWRFPTA 244
K GV + ++
Sbjct: 150 DSKAGR------------------------ILSGVSFWDAPTAEKIVSFIDKAYVSGEFV 185
Query: 245 NDFGSEIIPASANEQFLKAYLF-NDYWEDIGTIRSFFEAN 283
+ + ++ + E + + +I +++ + +
Sbjct: 186 DLYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKLE 225
|
| >d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Score = 55.1 bits (131), Expect = 3e-09
Identities = 37/265 (13%), Positives = 72/265 (27%), Gaps = 45/265 (16%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
A+IL G GTR+ K + G +++ + K + + + +
Sbjct: 4 AIILAAGKGTRMKSDL---PKVLHKVAGIS-MLEHVFRSVGAIQPEKTVTVVGHKAELVE 59
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIE 130
LA + + + GT AV + E
Sbjct: 60 EVLAGQTEFVT----------------------QSEQLGTGHAVMMTEPILEGLSG--HT 95
Query: 131 DVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSE 190
V+ + + + H TI D+ +G + N+ VL E
Sbjct: 96 LVIAGDTPLITGESLKNLIDFHINHKNVATILTAETDNP--FGYGRIVRNDNAEVLRIVE 153
Query: 191 KPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSE 250
+ D + G + E L + + ++
Sbjct: 154 QKDATD-FEKQIKEINTGTYVFDNERLFEA-------------LKNINTNNAQGEYYITD 199
Query: 251 IIP-ASANEQFLKAYLFNDYWEDIG 274
+I + + AY D+ E +G
Sbjct: 200 VIGIFRETGEKVGAYTLKDFDESLG 224
|
| >d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: mannose-1-phosphate guanylyl transferase domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 species: Thermus thermophilus [TaxId: 274]
Score = 45.8 bits (107), Expect = 3e-06
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 9 VAAVILGGGAGTRLYPL-TKQRAKPAVPIGGAYRLID 44
A+++ GG G RL+PL + R KP +P+ L++
Sbjct: 3 TYALVMAGGRGERLWPLSREDRPKPFLPLFEGKTLLE 39
|
| >d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 42.8 bits (99), Expect = 3e-05
Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 4/90 (4%)
Query: 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSA 67
++ VIL G GTR+Y K + G ++ + G V+++ +
Sbjct: 2 AMSVVILAAGKGTRMYS---DLPKVLHTLAGKA-MVQHVIDAANELGAAHVHLVYGHGGD 57
Query: 68 SLNRHLARAYNYGSGVTFGDGCVEVLAATQ 97
L + L G +
Sbjct: 58 LLKQALKDDNLNWVLQAEQLGTGHAMQQAA 87
|
| >d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: TTHA0179-like domain: Uncharacterized protein TTHA0179 species: Thermus thermophilus [TaxId: 274]
Score = 36.4 bits (83), Expect = 0.003
Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYN 65
+A++L GG +K VP G +++ + +G++ VY+
Sbjct: 2 RPSAIVLAGGKEAWAERFG-VGSKALVPYRG-RPMVEWVLEALYAAGLSPVYVGENPG 57
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 415 | |||
| d1yp2a2 | 307 | Glucose-1-phosphate adenylyltransferase small subu | 100.0 | |
| d1fxoa_ | 292 | RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} | 100.0 | |
| d1mc3a_ | 291 | RffH {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1lvwa_ | 295 | RmlA (RfbA) {Archaeon Methanobacterium thermoautot | 100.0 | |
| d1tzfa_ | 259 | Glucose-1-phosphate cytidylyltransferase RfbF {Sal | 100.0 | |
| d2cu2a2 | 268 | Putative mannose-1-phosphate guanylyl transferase | 99.97 | |
| d1jyka_ | 229 | CTP:phosphocholine cytidylytransferase LicC {Strep | 99.97 | |
| d1g97a2 | 250 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.95 | |
| d2oi6a2 | 248 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.92 | |
| d1i52a_ | 225 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.74 | |
| d1w77a1 | 226 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.68 | |
| d1vpaa_ | 221 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.63 | |
| d1vgwa_ | 226 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.63 | |
| d1yp2a1 | 135 | Glucose-1-phosphate adenylyltransferase small subu | 99.53 | |
| d2dpwa1 | 231 | Uncharacterized protein TTHA0179 {Thermus thermoph | 99.51 | |
| d1vh1a_ | 246 | CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn | 99.45 | |
| d1vica_ | 255 | CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn | 99.44 | |
| d1h7ea_ | 245 | CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn | 99.44 | |
| d1fxja1 | 78 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.36 | |
| d1eyra_ | 225 | CMP acylneuraminate synthetase {Neisseria meningit | 99.3 | |
| d1e5ka_ | 188 | Molybdenum cofactor biosynthesis protein MobA {Esc | 99.27 | |
| d1w55a1 | 205 | IspD/IspF bifunctional enzyme, CDP-me synthase dom | 99.25 | |
| d3bswa1 | 193 | Acetyltransferase PglD {Campylobacter jejuni [TaxI | 99.14 | |
| d1qwja_ | 228 | CMP acylneuraminate synthetase {Mouse (Mus musculu | 99.1 | |
| d1yp2a1 | 135 | Glucose-1-phosphate adenylyltransferase small subu | 99.09 | |
| d1fxja1 | 78 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.08 | |
| d1j2za_ | 259 | UDP N-acetylglucosamine acyltransferase {Helicobac | 99.06 | |
| d2icya2 | 378 | UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale c | 99.05 | |
| d1g97a1 | 196 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.03 | |
| d1qrea_ | 210 | gamma-carbonic anhydrase {Archaeon Methanosarcina | 99.01 | |
| d1qrea_ | 210 | gamma-carbonic anhydrase {Archaeon Methanosarcina | 98.94 | |
| d2jf2a1 | 262 | UDP N-acetylglucosamine acyltransferase {Escherich | 98.92 | |
| d1krra_ | 200 | Galactoside acetyltransferase {Escherichia coli [T | 98.9 | |
| d2jf2a1 | 262 | UDP N-acetylglucosamine acyltransferase {Escherich | 98.82 | |
| d3tdta_ | 274 | Tetrahydrodipicolinate-N-succinlytransferase, THDP | 98.74 | |
| d1xhda_ | 172 | Putative acetyltransferase/acyltransferase BC4754 | 98.72 | |
| d1g97a1 | 196 | N-acetylglucosamine 1-phosphate uridyltransferase | 98.63 | |
| d2oi6a1 | 201 | N-acetylglucosamine 1-phosphate uridyltransferase | 98.6 | |
| d1ocxa_ | 182 | Maltose O-acetyltransferase {Escherichia coli [Tax | 98.59 | |
| d1v3wa_ | 173 | Ferripyochelin binding protein {Archaeon Pyrococcu | 98.57 | |
| d3bswa1 | 193 | Acetyltransferase PglD {Campylobacter jejuni [TaxI | 98.54 | |
| d1j2za_ | 259 | UDP N-acetylglucosamine acyltransferase {Helicobac | 98.51 | |
| d3tdta_ | 274 | Tetrahydrodipicolinate-N-succinlytransferase, THDP | 98.43 | |
| d1mr7a_ | 203 | Xenobiotic acetyltransferase {Enterococcus faecium | 98.4 | |
| d1xhda_ | 172 | Putative acetyltransferase/acyltransferase BC4754 | 98.4 | |
| d1krra_ | 200 | Galactoside acetyltransferase {Escherichia coli [T | 98.25 | |
| d1xata_ | 208 | Xenobiotic acetyltransferase {Pseudomonas aerugino | 98.25 | |
| d1jv1a_ | 501 | UDP-N-acetylglucosamine pyrophosphorylase {Human ( | 98.24 | |
| d1v3wa_ | 173 | Ferripyochelin binding protein {Archaeon Pyrococcu | 98.11 | |
| d1ssqa_ | 241 | Serine acetyltransferase {Haemophilus influenzae [ | 98.1 | |
| d1ocxa_ | 182 | Maltose O-acetyltransferase {Escherichia coli [Tax | 97.88 | |
| d2f9ca1 | 320 | Hypothetical protein YdcK {Salmonella enterica [Ta | 97.83 | |
| d1mr7a_ | 203 | Xenobiotic acetyltransferase {Enterococcus faecium | 97.8 | |
| d2oi6a1 | 201 | N-acetylglucosamine 1-phosphate uridyltransferase | 97.78 | |
| d1ssqa_ | 241 | Serine acetyltransferase {Haemophilus influenzae [ | 97.62 | |
| d2f9ca1 | 320 | Hypothetical protein YdcK {Salmonella enterica [Ta | 97.29 | |
| d1xata_ | 208 | Xenobiotic acetyltransferase {Pseudomonas aerugino | 97.26 | |
| d1omza_ | 265 | Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-Ga | 82.23 |
| >d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=100.00 E-value=1.3e-43 Score=332.69 Aligned_cols=295 Identities=62% Similarity=1.097 Sum_probs=233.4
Q ss_pred cceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccC
Q 014953 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (415)
.++.|||||||.||||+|||.++||+|+||+|++|||+|+|++|.++|+++|+|+++|+.+++.+|+.+.+.........
T Consensus 10 ~~~~AIILAaG~GtRL~plT~~~PK~llpv~g~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~l~~~~~ 89 (307)
T d1yp2a2 10 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 89 (307)
T ss_dssp HHEEEEEC------CCTTTTTTSCGGGCEETTTEETTHHHHHHHHHTTCCEEEEEESCCCHHHHHHHHHHCC--------
T ss_pred CceEEEEECCCCcccCChhhcCCCcceEEECCCCCHHHHHHHHHHHcCCCEEEEEeccccccchhhhhcccccccccccc
Confidence 45999999999999999999999999999988559999999999999999999999999999999998765321111011
Q ss_pred CceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEEEc
Q 014953 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPM 166 (415)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~~~ 166 (415)
.....++...+.. .+.+++.|++++++.+..++++. ..++|++++||++++.++..+++.|+.+++.++++....
T Consensus 90 ~~~~~~~~~~~~~--~~~~~~~g~~~ai~~~~~~i~~~---~~~~~iv~~~D~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 164 (307)
T d1yp2a2 90 EGFVEVLAAQQSP--ENPDWFQGTADAVRQYLWLFEEH---TVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPM 164 (307)
T ss_dssp CCEEEEEESCSST--TSCCCCCSHHHHHHHTHHHHTTS---CCSEEEEECSCEECCCCHHHHHHHHHHTTCSEEEEEEEE
T ss_pred cccceeeceeeec--cccccccchhHHHHHhHHhhhcc---ccceEEEecCcceeccchhhhhhhhhhccccceEEEEec
Confidence 1222333333322 23456789999999999998752 257899999999999999999999999999999988888
Q ss_pred CCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCCc
Q 014953 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAND 246 (415)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~~~~ 246 (415)
+.+....||++.+|++++|..|.|+|.......+..+..++.+.........++.++|+|+|++++|..+++...+...+
T Consensus 165 ~~~~~~~~gvv~~d~~~~v~~~~Ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~giyi~~~~~l~~~~~~~~~~~~~ 244 (307)
T d1yp2a2 165 DEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGAND 244 (307)
T ss_dssp CHHHHTTSEEEEECTTSBEEEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHTTCTTCCC
T ss_pred ccccccccceEEECCCCcEEEEEECCCCcccccccccccccccccchhhcccchhhCceEEECHHHHHHHhhhccccccc
Confidence 76667889999999999999999999977655555555555554444444568899999999999998887776666677
Q ss_pred ccccchhhhccc-ceEEEEEeCceEEecCCHHHHHHHHHhhcCCC-CCCCccCCCCCccccC
Q 014953 247 FGSEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEANLALTAHP-PMFSFYDATKPIYTSR 306 (415)
Q Consensus 247 ~~~~~l~~l~~~-~~i~~~~~~g~~~di~t~~~y~~an~~~l~~~-~~~~~~~~~~~~~~~~ 306 (415)
+..++++.+++. .++++|+++|+|.|||||++|.+||++++++. +...++.+++++++.+
T Consensus 245 ~~~d~i~~li~~g~~v~~~~~~g~W~Digt~~~~~~a~~~ll~~~~~~~~~~~~~~~i~~~~ 306 (307)
T d1yp2a2 245 FGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQP 306 (307)
T ss_dssp TTTTHHHHHHHTTCCEEEEECCSCCEECSSHHHHHHHHHGGGCSSSCSSCSCCSSSCCCCCC
T ss_pred hHHHHHHHHHHCCCcEEEEEeCCeEEECcCHHHHHHHHHHHhcCCCchhhccCCCCCccCCC
Confidence 888999988775 58999999999999999999999999999876 4446788889988764
|
| >d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=3.8e-41 Score=309.48 Aligned_cols=234 Identities=22% Similarity=0.358 Sum_probs=194.6
Q ss_pred ceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccC-hhHHHHHHHhhccCCCCcccC
Q 014953 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYN-SASLNRHLARAYNYGSGVTFG 86 (415)
Q Consensus 8 ~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~-~~~i~~~l~~~~~~~~~~~~~ 86 (415)
++||||||||.||||+|+|..+||||+||+|+ |||+|+|++|..+|+++|++++++. .+.+.+++. .+..++
T Consensus 1 k~KavILAgG~GtRl~plT~~~pKpllpi~gk-PiI~~~l~~l~~~Gi~ei~ii~~~~~~~~i~~~~~------~~~~~g 73 (292)
T d1fxoa_ 1 KRKGIILAGGSGTRLHPATLAISKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLG------DGSNWG 73 (292)
T ss_dssp CEEEEEECCCCCTTTTTHHHHSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHT------TSGGGT
T ss_pred CcEEEEECCCCCCcCChhhcCCCcccCEECCE-ehHHHHHHHHHHCCCCEEEEEeCcCCHHHHHHHhc------cccccC
Confidence 57999999999999999999999999999999 9999999999999999998887754 456666654 333454
Q ss_pred CceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEEEc
Q 014953 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPM 166 (415)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~~~ 166 (415)
.. +..+ .|. ++.||++|+..+.+++++ .+.|+++++|++++.|+.+++++|.++++.+|+++.++
T Consensus 74 ~~-I~y~--~q~-------~~~Gta~ai~~a~~~i~~-----~~~~lil~dD~~~~~dl~~ll~~h~~~~~~~~i~~~~V 138 (292)
T d1fxoa_ 74 LD-LQYA--VQP-------SPDGLAQAFLIGESFIGN-----DLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHV 138 (292)
T ss_dssp CE-EEEE--ECS-------SCCCGGGHHHHTHHHHTT-----SEEEEEETTEEEECTTHHHHHHHHHTCCSSEEEEEEEC
T ss_pred eE-EEEc--cCC-------CCCcHHHHHHhhhhhcCC-----CceEEEEccccccCcCHHHHHHHHHhCCCCcEEEEEEC
Confidence 32 2222 232 247999999999999975 45678888899999999999999999999999999998
Q ss_pred CCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC--C
Q 014953 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT--A 244 (415)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~--~ 244 (415)
++ +++||++.+|+++++..+.|||..+. ++++.+|+|+|++++++ +++...+. .
T Consensus 139 ~~--p~~yGV~~~d~~~ki~~~~EKP~~p~---------------------Snla~~G~Y~f~~~~~~-~~~~l~~s~rg 194 (292)
T d1fxoa_ 139 LD--PERYGVVEFDQGGKAISLEEKPLEPK---------------------SNYAVTGLYFYDQQVVD-IARDLKPSPRG 194 (292)
T ss_dssp SC--GGGSEEEEECTTSCEEEEEESCSSCS---------------------SSEEEEEEEEECTTHHH-HHHHCCCCTTS
T ss_pred CC--HHHCeEEEEcCCCCEeEEEECCCCCC---------------------CCcEEEEEEEEChHHHH-HHHhCCCCCCC
Confidence 77 67999999999999999999998653 68999999999999985 55555433 2
Q ss_pred CcccccchhhhcccceEEEEEeC-c-eEEecCCHHHHHHHHHhhc
Q 014953 245 NDFGSEIIPASANEQFLKAYLFN-D-YWEDIGTIRSFFEANLALT 287 (415)
Q Consensus 245 ~~~~~~~l~~l~~~~~i~~~~~~-g-~~~di~t~~~y~~an~~~l 287 (415)
+....|+++.+++.+++.++.+. | +|+|+||+++|++|++.+.
T Consensus 195 E~eitD~~~~~l~~~~~~~~~~~~~~~W~D~Gt~~~l~~a~~~v~ 239 (292)
T d1fxoa_ 195 ELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIA 239 (292)
T ss_dssp SCCHHHHHHHHHHTTCEEEEECCTTSEEEECCSHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHcCCeEEEEeCCCCEEEeCCCHHHHHHHHHHHH
Confidence 44567889999999988888774 3 5999999999999998664
|
| >d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RffH species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.2e-40 Score=303.60 Aligned_cols=233 Identities=24% Similarity=0.360 Sum_probs=189.9
Q ss_pred eEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCc
Q 014953 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (415)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (415)
|+|||||||.||||+|+|..+||||+||+|+ |||+|+|+.|..+|+++|+|+++++.+.+.+.+ ++++.+|+..
T Consensus 2 MkaiIlagG~GtRl~p~t~~~pK~llpi~~k-p~i~~~l~~l~~~gi~~i~iv~~~~~~~~~~~~-----~~~g~~~gi~ 75 (291)
T d1mc3a_ 2 MKGIILAGGSGTRLHPITRGVSKQLLPIYDK-PMIYYPLSVLMLAGIREILIITTPEDKGYFQRL-----LGDGSEFGIQ 75 (291)
T ss_dssp CEEEEECCCCCGGGHHHHTTSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHH-----HTTSGGGTCE
T ss_pred ccEEEECCcCccccchhhcCCCccccEECCE-ehHHHHHHHHHHcCCCEEEEEeCcccHHHHHHH-----hCchHhhCcE
Confidence 8999999999999999999999999999999 999999999999999999999998876544333 2445566533
Q ss_pred eEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEEEcCC
Q 014953 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDD 168 (415)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~~~~~ 168 (415)
+.++ .|. .++||++|+..+.+++++ .+.++++++|.+++.++..++++|.++++++|+++.++++
T Consensus 76 -I~y~--~Q~-------~plGta~Ai~~a~~fi~~-----~~~~lvlgddi~~~~~~~~~l~~~~~~~~~atI~~~~V~d 140 (291)
T d1mc3a_ 76 -LEYA--EQP-------SPDGLAQAFIIGETFLNG-----EPSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQVMD 140 (291)
T ss_dssp -EEEE--ECS-------SCCCSTHHHHHTHHHHTT-----SCEEEEETTEEEECSSCHHHHHHHTTCCSSEEEEEEECSC
T ss_pred -EEEE--ECC-------CCCchHHHHHHHHHHhCC-----CCeEEEECCCcccCcCHHHHHHHHHhCcCCcEEEEEECCC
Confidence 2322 333 247999999999999974 3446667777789999999999999999999999999987
Q ss_pred CcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC-CCc-
Q 014953 169 SRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT-AND- 246 (415)
Q Consensus 169 ~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~-~~~- 246 (415)
+++||++.+|++|+|..+.|||..+. ++++.+|+|+|++++++ .++...+. ...
T Consensus 141 --P~~yGVve~d~~g~i~~i~EKP~~p~---------------------Sn~a~~GiY~f~~~v~~-~~~~lk~s~rgE~ 196 (291)
T d1mc3a_ 141 --PERFGVVEFDDNFRAISLEEKPKQPK---------------------SNWAVTGLYFYDSKVVE-YAKQVKPSERGEL 196 (291)
T ss_dssp --CSSSBBCEEETTEEEEECCBSCSSCS---------------------CSEEEEEEEECCTHHHH-HHHSCCCCSSSSC
T ss_pred --cccCCCceeccCcceeEEEECCCCCC---------------------CCeEEEEEEEeChHHHH-HHhcCCCCCCCce
Confidence 78999999999999999999998653 58999999999999996 44544332 212
Q ss_pred ccccchhhhcccceEEEEEeC-c-eEEecCCHHHHHHHHHhh
Q 014953 247 FGSEIIPASANEQFLKAYLFN-D-YWEDIGTIRSFFEANLAL 286 (415)
Q Consensus 247 ~~~~~l~~l~~~~~i~~~~~~-g-~~~di~t~~~y~~an~~~ 286 (415)
-..|+++.+++.+++..+.+. | +|+|+||+++|.+|+..+
T Consensus 197 EItdl~~~~l~~~~~~~~~~~~g~~W~D~Gt~~~l~~a~~~v 238 (291)
T d1mc3a_ 197 EITSINQMYLEAGNLTVELLGRGFAWLDTGTHDSLIEASTFV 238 (291)
T ss_dssp CHHHHHHHHHHTTCEEEEECCTTCEEEECCSHHHHHHHHHHH
T ss_pred eehHHHHHHHHcCCceEEEecCCCEEEeCCCHHHHHHHHHHH
Confidence 235777878888877777664 4 699999999999999755
|
| >d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=100.00 E-value=9.4e-35 Score=269.92 Aligned_cols=235 Identities=23% Similarity=0.351 Sum_probs=185.5
Q ss_pred cceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHH-HHHHhhccCCCCccc
Q 014953 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN-RHLARAYNYGSGVTF 85 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~-~~l~~~~~~~~~~~~ 85 (415)
..|+|||||||.||||+|+|.+.||||+||+|+ |||+|++++|..+|+++++|+++++...+. +++.+ ...+
T Consensus 2 ~~MkavIlagG~GtRl~p~t~~~PK~ll~i~~k-pii~~~l~~l~~~g~~~i~Iv~~~~~~~~~~~~~~~------~~~~ 74 (295)
T d1lvwa_ 2 AHMKGIVLAGGSGTRLYPITRAVSKQLLPIYDK-PMIYYPLSVLMLAGIRDILIISTPRDLPLYRDLLGD------GSQF 74 (295)
T ss_dssp CSCEEEEECCCCCSTTTTTTTSSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTT------SGGG
T ss_pred CCcEEEEECCCCcccCCcccCCCCcccCeECCE-EHHHHHHHHHHHCCCCeEEEEeCcccHHHHHHHhcc------chhc
Confidence 469999999999999999999999999999999 999999999999999999999998875444 44432 2233
Q ss_pred CCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEEE
Q 014953 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLP 165 (415)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~~ 165 (415)
+.. +.++. ++ .+.||++|+..+..++++ ++.++++++|++++.++..++..|.+.+..+|+++.+
T Consensus 75 ~~~-i~~v~--e~-------~~~gta~Al~~a~~~l~~-----~~~~li~~~d~~~~~~~~~~~~~~~~~~~~~ti~~~~ 139 (295)
T d1lvwa_ 75 GVR-FSYRV--QE-------EPRGIADAFIVGKDFIGD-----SKVALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYY 139 (295)
T ss_dssp TSE-EEEEE--CS-------SCCCGGGHHHHTHHHHTT-----SCEEEEETTCCEECTTHHHHHHHHHTCCSSEEEEEEE
T ss_pred CCE-EEEEE--CC-------CCCCHHHHHHHHHHHcCC-----CCEEEEeCCcceechhHHHHHHHHHhCCCCeEEEEEE
Confidence 322 33332 22 136999999999999964 4568888888899999999999999999999999988
Q ss_pred cCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC--
Q 014953 166 MDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT-- 243 (415)
Q Consensus 166 ~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~-- 243 (415)
.++ +.+||++.++++++|..|.|||..+. ++++++|+|+|++++|. ++......
T Consensus 140 ~~~--~~~yG~i~~~~~~~v~~~~EKp~~~~---------------------s~~~~~Giy~~n~~if~-~~~~~~~~~~ 195 (295)
T d1lvwa_ 140 VRD--PRPFGVVEFDSEGRVISIEEKPSRPK---------------------SNYVVPGLYFYDNQVVE-IARRIEPSDR 195 (295)
T ss_dssp CSC--CTTSEEEEECTTSBEEEEEESCSSCS---------------------CSEECCSEEEECTTHHH-HHHHCCCCTT
T ss_pred cCC--CccccEEEECCCCcEEEEeecccCcc---------------------cceeecceEEECHHHHH-HHHhcCCCcC
Confidence 776 67899999998999999999998643 36899999999999885 44443221
Q ss_pred CCcccccchhhhcccc--eEEEEEeCceEEecCCHHHHHHHHHhhc
Q 014953 244 ANDFGSEIIPASANEQ--FLKAYLFNDYWEDIGTIRSFFEANLALT 287 (415)
Q Consensus 244 ~~~~~~~~l~~l~~~~--~i~~~~~~g~~~di~t~~~y~~an~~~l 287 (415)
......++++.++... +++.+..+.+|.|+||+++|.+|+.++.
T Consensus 196 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~w~Digt~~~l~~~s~~i~ 241 (295)
T d1lvwa_ 196 GELEITSVNEEYLRMGKLRVELMGRGMAWLDTGTHDGLLEASSFIE 241 (295)
T ss_dssp SCCCHHHHHHHHHHTTCEEEEEECTTCEECCCSSHHHHHHHHHHHH
T ss_pred CCeeccchHHHHHHhCCCeEEEcCCCcEEeCCCChHHHHHHHHHHH
Confidence 1222345666666555 4555556789999999999999997663
|
| >d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: Glucose-1-phosphate cytidylyltransferase RfbF species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=3.1e-32 Score=247.87 Aligned_cols=238 Identities=25% Similarity=0.326 Sum_probs=177.4
Q ss_pred cceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccC
Q 014953 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (415)
+.+||||||||.||||+|+|.+.||||+||+|+ |||+|+|+.|.++|+++|+|+++|..+++.+|+.+.+.+.....+.
T Consensus 1 ~~~kAiILAAG~GtRl~~lT~~~PK~Ll~i~gk-plI~~~i~~l~~~gi~~i~iv~gy~~~~i~~~~~~~~~~~~~i~~~ 79 (259)
T d1tzfa_ 1 MASKAVILAGGLGTRLSEETIVKPKPMVEIGGK-PILWHIMKMYSVHGIKDFIICCGYKGYVIKEYFANYFLHMSDVTFH 79 (259)
T ss_dssp CCCEEEEEECSCC--------CCCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECTTHHHHHHHHHTHHHHHSCEEEE
T ss_pred CCceEEEECCCccccCChhhCCCCccceEECCE-EHHHHHHHHHHHcCCCeeeeccchhHHHHHHHHhcchhccccccch
Confidence 357899999999999999999999999999999 9999999999999999999999999999999987543211111110
Q ss_pred --------------CceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHH
Q 014953 87 --------------DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNH 152 (415)
Q Consensus 87 --------------~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h 152 (415)
...+.++.... ..++.+++..+.+.+.. .++|+++++|.+++.++..+++.|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~~~ 145 (259)
T d1tzfa_ 80 MAENRMEVHHKRVEPWNVTLVDTGD---------SSMTGGRLKRVAEYVKD-----DEAFLFTYGDGVADLDIKATIDFH 145 (259)
T ss_dssp GGGTEEEETTCCCCCCEEEEEECCS---------SCCHHHHHHHTGGGTTT-----SSCEEEEETTEEECCCHHHHHHHH
T ss_pred hccccchhhhccccccceeEEeccc---------cccccchhhhhhhhccC-----CCceEEeccccccccchhhhhhhh
Confidence 01122222211 36899999999887754 578999999999999999999999
Q ss_pred HHcCCcEEEEEEEcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHH
Q 014953 153 RQSGADITISCLPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEI 232 (415)
Q Consensus 153 ~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~ 232 (415)
...+...+...... .++++.+... .+++..+.+.+... +++..+|+|++++++
T Consensus 146 ~~~~~~~~~~~~~~----~~~~~~~~~~-~~~i~~~~~~~~~~----------------------~~~~~~G~y~~~~~~ 198 (259)
T d1tzfa_ 146 KAHGKKATLTATFP----PGRFGALDIQ-AGQVRSFQEKPKGD----------------------GAMINGGFFVLNPSV 198 (259)
T ss_dssp HHHCCSEEEEEECC----CCCSEEEEEE-TTEEEEEEESCSCC----------------------SCCEECCCEEECGGG
T ss_pred cccccceeeccccc----cccCCceecc-cceEEeeeeccccc----------------------eeeecceeccccchh
Confidence 99888877766543 2445555543 45666666655432 367889999999987
Q ss_pred HHHHHhhhCCCCCcccccchhhhcccceEEEEEeCceEEecCCHHHHHHHHHhhcCCC
Q 014953 233 LLNLLRWRFPTANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHP 290 (415)
Q Consensus 233 l~~~l~~~~~~~~~~~~~~l~~l~~~~~i~~~~~~g~~~di~t~~~y~~an~~~l~~~ 290 (415)
+.. +. ....++..++++.+++.+++++|.++|||.||||++||..+|+.+.+..
T Consensus 199 ~~~-i~---~~~~~~~~~~l~~l~~~~~v~~~~~~g~W~didt~~d~~~~~~~~~~~~ 252 (259)
T d1tzfa_ 199 IDL-ID---NDATTWEQEPLMTLAQQGELMAFEHPGFWQPMDTLRDKVYLEGLWEKGK 252 (259)
T ss_dssp GGG-CC---STTCCTTTHHHHHHHHTTCEEEEEECSCEEECCSHHHHHHHHHHHHTTC
T ss_pred hhh-cc---cCcCccHHHHHHHHHhcCCeEEEEeCCEEEECCCHHHHHHHHHHHHcCC
Confidence 742 22 2344567789999999999999999999999999999999999888754
|
| >d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: mannose-1-phosphate guanylyl transferase domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 species: Thermus thermophilus [TaxId: 274]
Probab=99.97 E-value=2.5e-31 Score=242.82 Aligned_cols=235 Identities=21% Similarity=0.342 Sum_probs=163.9
Q ss_pred cceEEEEEcCCCCCccccc-ccCCcccceeeC-Ccceeehhehhhhhc-cCCcEEEEEcccChhHHHHHHHhhccCCCCc
Q 014953 7 RTVAAVILGGGAGTRLYPL-TKQRAKPAVPIG-GAYRLIDVPMSNCIN-SGINKVYILTQYNSASLNRHLARAYNYGSGV 83 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~pl-t~~~pK~llpv~-g~~pli~~~l~~l~~-~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~ 83 (415)
|++.|||||||.||||+|| |.++||||+||. ++ |||+|+++++.. .+++++++++++..+.+.++. ..+.
T Consensus 1 MKi~aVILAGG~GtRL~PlS~~~~PK~ll~i~g~k-~ll~~~i~rl~~~~~~~~i~i~~~~~~~~~~~~~------~~~~ 73 (268)
T d2cu2a2 1 MKTYALVMAGGRGERLWPLSREDRPKPFLPLFEGK-TLLEATLERLAPLVPPERTLLAVRRDQEAVARPY------ADGI 73 (268)
T ss_dssp CCEEEEEECCCCCGGGTTTCBTTBCGGGCBCGGGC-BHHHHHHHHHTTTSCGGGEEEEEEGGGHHHHGGG------CSSS
T ss_pred CCceEEEecCCCcccCCCcccCCCCceeeecCCCC-CHHHHHHHHhhCcCCccchhhhhhHHHHHHhhhh------cccc
Confidence 4567999999999999999 678999999985 68 999999999987 467889999998877665432 1211
Q ss_pred ccCCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccCh--HHHHHH---HHHcCCc
Q 014953 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDY--MDFVQN---HRQSGAD 158 (415)
Q Consensus 84 ~~~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l--~~~l~~---h~~~~~~ 158 (415)
.++...+ ..||++++..+...+.. ...+.|+|++||++++.++ ...+.. +.+++..
T Consensus 74 -------~ii~E~~---------~~~t~~a~~~~~~~~~~---~~~~~vlvl~~D~~~~~~~~~~~~i~~~~~~~~~~~~ 134 (268)
T d2cu2a2 74 -------RLLLEPL---------GRDTAGAVLLGVAEALK---EGAERLLVLPADHYVGDDEAYREALATMLEAAEEGFV 134 (268)
T ss_dssp -------EEEEESS---------CCHHHHHHHHHHHHHHH---HTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCTTCE
T ss_pred -------ceeeeee---------cCCcccchhhHHHHHhc---cCCceeEEEecchhhcccHHHHHHHHHHHHHHhcCCe
Confidence 1221112 25899998887655422 1258899999999988774 333443 2345566
Q ss_pred EEEEEEEcCCCcCCcccEEEECCCC----CeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHH
Q 014953 159 ITISCLPMDDSRASDFGLMKINNEG----RVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILL 234 (415)
Q Consensus 159 ~ti~~~~~~~~~~~~~g~v~~d~~~----~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~ 234 (415)
+|+...+... +..||++..++++ +|.+|.|||........ ....+++++|+|+|++++|.
T Consensus 135 ~~~~~~~~~~--~~~yG~i~~~~~~~~~~~v~~f~EKp~~~~~~~~--------------~~~~~~~N~Giy~f~~~~l~ 198 (268)
T d2cu2a2 135 VALGLRPTRP--ETEYGYIRLGPREGAWYRGEGFVEKPSYAEALEY--------------IRKGYVWNGGVFAFAPATMA 198 (268)
T ss_dssp EEEEECCSSC--CSSSCEEEEEEEETTEEEEEEEECCCCHHHHHHH--------------HHTTCEEEEEEEEECHHHHH
T ss_pred Eeeecccccc--ccccceEEeccccccchhhheeecccchhhhhhh--------------hccCcccchhhhhcchHHHH
Confidence 6666666544 6889999886543 79999999986543211 11247899999999999886
Q ss_pred HHHhhhCCC---------CCcccccchhh---------hc-ccceEEEEEeCceEEecCCHHHHHHHH
Q 014953 235 NLLRWRFPT---------ANDFGSEIIPA---------SA-NEQFLKAYLFNDYWEDIGTIRSFFEAN 283 (415)
Q Consensus 235 ~~l~~~~~~---------~~~~~~~~l~~---------l~-~~~~i~~~~~~g~~~di~t~~~y~~an 283 (415)
..+++..+. ......+.++. ++ +..++.+++++++|.|+||++++.+..
T Consensus 199 ~~~~~~~p~i~~~~~~~~~~~~~~~~f~~l~~iSiDyavlEk~~~v~~v~~d~~W~DvGtw~s~~~~~ 266 (268)
T d2cu2a2 199 ELFRRHLPSHHEALERLLAGASLEEVYAGLPKISIDYGVMEKAERVRVVLGRFPWDDVGNWRALERVF 266 (268)
T ss_dssp HHHHHHCHHHHHHHHHHHTTCCHHHHHHTSCCCCHHHHTGGGCSSEEEEEECSCEECCCSTTHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHhcchHHHHHhhCccccchhhhhcccCCceEEecCCCcCCCcCHHHHHHHh
Confidence 655543221 01111222222 12 246899999999999999999999865
|
| >d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CTP:phosphocholine cytidylytransferase LicC species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.97 E-value=8.8e-30 Score=227.51 Aligned_cols=220 Identities=16% Similarity=0.198 Sum_probs=161.9
Q ss_pred cceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccC
Q 014953 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (415)
++|+|||||||.||||+|+|...||||+||+|+ |||+|+++.|.++|+++|+|+++|..+++ +++.+.+ +
T Consensus 2 m~mkaiIlaaG~GtRl~p~t~~~pK~ll~i~gk-pli~~~i~~l~~~g~~~i~iv~g~~~e~i-~~~~~~~--------~ 71 (229)
T d1jyka_ 2 IRVKAIILAAGLGTRLRPLTENTPKALVQVNQK-PLIEYQIEFLKEKGINDIIIIVGYLKEQF-DYLKEKY--------G 71 (229)
T ss_dssp CCCEEEEEECSCCGGGTTTTSSSCGGGCEETTE-EHHHHHHHHHHHTTCCCEEEEECTTGGGG-THHHHHH--------C
T ss_pred CceeEEEECCCCcccCCccccCCCcceeEECCE-EHHHHHHHHHHHhCCcccccccccchhhh-hhhhhhc--------c
Confidence 689999999999999999999999999999999 99999999999999999999999988887 4554443 1
Q ss_pred CceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccChHHHHHHHHHcCCcEEEEEEEc
Q 014953 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPM 166 (415)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~l~~~l~~h~~~~~~~ti~~~~~ 166 (415)
++++...+. ...|++++++.+.+.++ ++|++.++|.+++..+.+.+ .. ..+.....
T Consensus 72 ---i~i~~~~~~-------~~~Gt~~sl~~a~~~l~-------~~~ii~~dd~~~~~~~~~~~----~~---~~~~~~~~ 127 (229)
T d1jyka_ 72 ---VRLVFNDKY-------ADYNNFYSLYLVKEELA-------NSYVIDADNYLFKNMFRNDL----TR---STYFSVYR 127 (229)
T ss_dssp ---CEEEECTTT-------TTSCTHHHHHTTGGGCT-------TEEEEETTEEESSCCCCSCC----CS---EEEEECEE
T ss_pred ---ccccccccc-------cccccccccccchhhhc-------ccccccccccccccchhhhh----hc---cccceeee
Confidence 223322222 12699999999988773 57888777777665443321 11 23333333
Q ss_pred CCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHH---hhhCC-
Q 014953 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLL---RWRFP- 242 (415)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l---~~~~~- 242 (415)
.+ +..++.+..+++++|..+.++|.. .+..+|+|++++.....+. +....
T Consensus 128 ~~--~~~~~~~~~~~~~~i~~~~~~~~~------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~~~ 181 (229)
T d1jyka_ 128 ED--CTNEWFLVYGDDYKVQDIIVDSKA------------------------GRILSGVSFWDAPTAEKIVSFIDKAYVS 181 (229)
T ss_dssp SS--CSSCCEEEECTTCBEEEEECCCSS------------------------EEBCCSEEEECHHHHHHHHHHHHHHHTT
T ss_pred ee--ccccceeEEccCCceeeEEEeccc------------------------ceEEEEEEEEcHHHHHHHHHHHHHhhcc
Confidence 33 456788888889999999888753 3466899999987654333 22211
Q ss_pred --CCCcccccchhhhcccceEEEEEeCc-eEEecCCHHHHHHHHHhh
Q 014953 243 --TANDFGSEIIPASANEQFLKAYLFND-YWEDIGTIRSFFEANLAL 286 (415)
Q Consensus 243 --~~~~~~~~~l~~l~~~~~i~~~~~~g-~~~di~t~~~y~~an~~~ 286 (415)
....+..+++...+.+..++++...+ .|.+|+|++||.+|+..+
T Consensus 182 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~t~edl~~a~~~~ 228 (229)
T d1jyka_ 182 GEFVDLYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKLEEIL 228 (229)
T ss_dssp TCCTTCCTTHHHHTTGGGCCEEEEECCTTSEEECCSHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHhCCceEEEecCCCEEecCCHHHHHHHHHhh
Confidence 12233445667777788899998876 599999999999998754
|
| >d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.95 E-value=7e-27 Score=210.87 Aligned_cols=231 Identities=18% Similarity=0.214 Sum_probs=175.1
Q ss_pred EEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCce
Q 014953 10 AAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGC 89 (415)
Q Consensus 10 ~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 89 (415)
.|||||||.||||+| ..||||+||+|+ |||+|+++.|.++|+++++|+++|..+.+..+.....
T Consensus 3 ~AIIlAaG~GtRl~~---~~PK~L~~i~Gk-pli~~~l~~l~~~~~~~iivv~~~~~~~~~~~~~~~~------------ 66 (250)
T d1g97a2 3 FAIILAAGKGTRMKS---DLPKVLHKVAGI-SMLEHVFRSVGAIQPEKTVTVVGHKAELVEEVLAGQT------------ 66 (250)
T ss_dssp EEEEECCCCCGGGCC---SSCGGGSEETTE-EHHHHHHHHHGGGCCSEEEEEECTTHHHHHHHTTTTS------------
T ss_pred EEEEECCCCCCCCCC---CCCceeeEECCe-eHHHHHHHHHHHcCCCeEEEecccccchhhhhccccc------------
Confidence 599999999999998 579999999999 9999999999999999999999998876665543211
Q ss_pred EEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeec-ccChHHHHHHHHHcCCcEEEEEEEcCC
Q 014953 90 VEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLY-RMDYMDFVQNHRQSGADITISCLPMDD 168 (415)
Q Consensus 90 v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~-~~~l~~~l~~h~~~~~~~ti~~~~~~~ 168 (415)
..... .. +.|+.+++..+...+... ..+.+++.++|.++ ..++..++++|...++..++...+...
T Consensus 67 ~~~~~-~~---------~~g~~~~~~~a~~~l~~~---~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 133 (250)
T d1g97a2 67 EFVTQ-SE---------QLGTGHAVMMTEPILEGL---SGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETDN 133 (250)
T ss_dssp EEEEC-SS---------CCCHHHHHHTTHHHHTTC---CSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECSC
T ss_pred ccccc-cc---------ccccchHHHHHHHhhhcc---cCcceEEecCCCccCHHHHHHHHHHHhhhccccccccceecc
Confidence 11111 11 259999999998888642 13445555555544 455899999999999999998887765
Q ss_pred CcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCC---CCC
Q 014953 169 SRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP---TAN 245 (415)
Q Consensus 169 ~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~---~~~ 245 (415)
+..++.+..+.++.+..+.+++...... ...++..+|+|+|+...+...++.... ...
T Consensus 134 --~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----------------~~~~~~~~g~y~f~~~~l~~~l~~~~~~~~~~~ 194 (250)
T d1g97a2 134 --PFGYGRIVRNDNAEVLRIVEQKDATDFE-----------------KQIKEINTGTYVFDNERLFEALKNINTNNAQGE 194 (250)
T ss_dssp --CTTSCEEEECTTCCEEEEECGGGCCHHH-----------------HTCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCS
T ss_pred --cCCCceEEEeeceEEEEeeccccccccc-----------------cccceeeeeeeecchHHHHHHHHHhccCcchhh
Confidence 5678888888888999998887654211 124678999999999888766654322 133
Q ss_pred cccccchhhhccc-ceEEEEEeCceEEe--cCCHHHHHHHHHhhcC
Q 014953 246 DFGSEIIPASANE-QFLKAYLFNDYWED--IGTIRSFFEANLALTA 288 (415)
Q Consensus 246 ~~~~~~l~~l~~~-~~i~~~~~~g~~~d--i~t~~~y~~an~~~l~ 288 (415)
.+..++++.+++. .+|.+++++++|.+ |+|++|+..|++.+.+
T Consensus 195 ~~~~~~~~~~~~~g~~V~~~~~~~~~~~~gInt~~dL~~ae~~~~~ 240 (250)
T d1g97a2 195 YYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVMRR 240 (250)
T ss_dssp CCGGGHHHHHHHTTCCEEEEECSSGGGGCCCSSHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHCCCeEEEEEcCCcceecCCCCHHHHHHHHHHHHH
Confidence 4556777776664 58999999999966 7899999999877654
|
| >d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=1.7e-24 Score=195.01 Aligned_cols=230 Identities=19% Similarity=0.231 Sum_probs=158.4
Q ss_pred ceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCC
Q 014953 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGD 87 (415)
Q Consensus 8 ~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~ 87 (415)
.|++||||||.||||+| ++||||+||+|+ |||+|+|+.|...|+++|+|++++..+.+.++....
T Consensus 2 ~MkvIILAAG~GtRm~~---~~PKpli~i~gk-piie~~i~~l~~~~~~~iiiv~~~~~~~~~~~~~~~----------- 66 (248)
T d2oi6a2 2 AMSVVILAAGKGTRMYS---DLPKVLHTLAGK-AMVQHVIDAANELGAAHVHLVYGHGGDLLKQALKDD----------- 66 (248)
T ss_dssp CEEEEEECCSCCGGGCC---SSCGGGSEETTE-EHHHHHHHHHHHHTCSCEEEEESSCHHHHHHHCCCT-----------
T ss_pred CceEEEECCCCCCCCCC---CCCeeeEEECCh-hHHHHHHHHHHHcCCcEEEeccCcccceeeeecccc-----------
Confidence 69999999999999997 589999999999 999999999999999999999999987776654211
Q ss_pred ceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHHHHcCCcEEEEEEEc
Q 014953 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITISCLPM 166 (415)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h~~~~~~~ti~~~~~ 166 (415)
....+... .+.|+++++..+..++.. ..++++..+|..+... ....+. +.......+++..+.
T Consensus 67 ~~~~~~~~----------~~~g~~~~~~~~~~~i~~-----~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 130 (248)
T d2oi6a2 67 NLNWVLQA----------EQLGTGHAMQQAAPFFAD-----DEDILMLYGDVPLISVETLQRLR-DAKPQGGIGLLTVKL 130 (248)
T ss_dssp TEEEEECS----------SCCCHHHHHHHHGGGSCT-----TSEEEEEETTCTTCCHHHHHHHH-HHCCTTSEEEEEEEC
T ss_pred cccccccc----------cCcccHHHHHhhhhhhcc-----ccceeeecCccccccchhHHHHH-HHhhccccceeEEEe
Confidence 11222211 136999999999988865 5788888888865432 211111 222334445555555
Q ss_pred CCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC---
Q 014953 167 DDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT--- 243 (415)
Q Consensus 167 ~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~--- 243 (415)
.+ +..++.+..+ ++....+.+++..... .....+..+|.|.|+.+.|...+......
T Consensus 131 ~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 190 (248)
T d2oi6a2 131 DD--PTGYGRITRE-NGKVTGIVEHKDATDE-----------------QRQIQEINTGILIANGADMKRWLAKLTNNNAQ 190 (248)
T ss_dssp SC--CTTSCEEEEE-TTEEEEEECGGGCCTT-----------------GGGCCEEEEEEEEEEHHHHHHHHTTCCCCSTT
T ss_pred cC--Cccccccccc-cCccceeeeccCCChh-----------------hhhhhhhhhhhhccchHHHHHHHHHhhccccc
Confidence 54 5667776664 4555555543332210 01235678999999998887666543221
Q ss_pred CCcccccchhhhccc-ceEEEEEeCceEE--ecCCHHHHHHHHHhhcC
Q 014953 244 ANDFGSEIIPASANE-QFLKAYLFNDYWE--DIGTIRSFFEANLALTA 288 (415)
Q Consensus 244 ~~~~~~~~l~~l~~~-~~i~~~~~~g~~~--di~t~~~y~~an~~~l~ 288 (415)
...+..++++.+++. .+|.++..+++|. .|+||+||..|++.+.+
T Consensus 191 ~e~~ltd~~~~~~~~g~~v~~v~~~~~~e~~gI~t~eDL~~ae~i~~~ 238 (248)
T d2oi6a2 191 GEYYITDIIALAYQEGREIVAVHPQRLSEVEGVNNRLQLSRLERVYQS 238 (248)
T ss_dssp CSCCTTHHHHHHHHTTCCEEEECCSSGGGGCCCSSHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHCCCeEEEEEcCCHHHhCCCCCHHHHHHHHHHHHH
Confidence 222345677776664 6889988888874 48899999999876543
|
| >d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=1.9e-17 Score=146.23 Aligned_cols=218 Identities=14% Similarity=0.095 Sum_probs=133.0
Q ss_pred cceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhcc-CCcEEEEEcccChhHHHHHHHhhccCCCCccc
Q 014953 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~-gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (415)
|++.|||||||.||||. .+.||+|+|++|+ |||+|+++.+.++ ++++|+|++++..+.+.++.....
T Consensus 2 M~i~AIILAaG~gtRm~---~~~pK~L~~i~gk-plI~~~i~~~~~~~~i~~Iivv~~~~~~~~~~~~~~~~-------- 69 (225)
T d1i52a_ 2 LDVCAVVPAAGFGRRMQ---TECPKQYLSIGNQ-TILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANH-------- 69 (225)
T ss_dssp CCEEEEEEECCCCGGGC---CSSCGGGSEETTE-EHHHHHHHHHHTSTTEEEEEEEECTTCCSGGGSGGGGC--------
T ss_pred CCEEEEEeCCCcceeCC---CCCCcceeEECCE-EHHHHHHHHHHhCccccccccccchhhhhhhhhhhccc--------
Confidence 57889999999999997 6799999999999 9999999999886 689999999877655433322211
Q ss_pred CCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHHHHHcCCcEEEEE
Q 014953 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISC 163 (415)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~h~~~~~~~ti~~ 163 (415)
..+.+.. +. .+..++++.+...+.+ .+.+++..+|. +...+ +..+++..... ....+..
T Consensus 70 --~~v~~~~--~~---------~~~~~sv~~~~~~~~~-----~~~vl~~~~~~p~i~~~~~~~~~~~~~~~-~~~~v~~ 130 (225)
T d1i52a_ 70 --PQITVVD--GG---------DERADSVLAGLKAAGD-----AQWVLVHDAARPCLHQDDLARLLALSETS-RTGGILA 130 (225)
T ss_dssp --TTEEEEE--CC---------SSHHHHHHHHHHTSTT-----CSEEEECCTTCTTCCHHHHHHHHGGGGTC-SSCEEEE
T ss_pred --ccccccc--CC---------cchhHHHHhhhcccCc-----cceeeeeccCCCCCCHHHHHHHHhhhhhc-ccccccc
Confidence 1132221 11 2567899999888764 57788888987 44443 55555544443 4445555
Q ss_pred EEcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC
Q 014953 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (415)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~ 243 (415)
.+..+. . ......++......++.. .....+.+.|..+.+...++.....
T Consensus 131 ~~~~d~--~---~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~f~~~~l~~~~~~~~~~ 180 (225)
T d1i52a_ 131 APVRDT--M---KRAEPGKNAIAHTVDRNG-------------------------LWHALTPQFFPRELLHDCLTRALNE 180 (225)
T ss_dssp EECCSC--E---EEECTTSSSEEEEECCTT-------------------------CEEEEEEEEEEHHHHHHHHHHHHHT
T ss_pred cceeec--c---chhcccccccccccchHH-------------------------HHHHhhhhhhhhHHHHHHHHHHHhc
Confidence 554431 1 111122233333222211 1123356677777776666543222
Q ss_pred CCcccccchhhhc-ccceEEEEEeCceEEecCCHHHHHHHHHhh
Q 014953 244 ANDFGSEIIPASA-NEQFLKAYLFNDYWEDIGTIRSFFEANLAL 286 (415)
Q Consensus 244 ~~~~~~~~l~~l~-~~~~i~~~~~~g~~~di~t~~~y~~an~~~ 286 (415)
.. ...|...-+. .+.++..+..+..-..|+||+|+..|+..+
T Consensus 181 ~~-~~tD~~~l~~~~g~~v~~v~~~~~nikItt~eDl~~Ae~~l 223 (225)
T d1i52a_ 181 GA-TITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYL 223 (225)
T ss_dssp TC-CCCSHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHH
T ss_pred CC-CCCcHHHHHHHCCCceEEEecCccccCcCCHHHHHHHHHHh
Confidence 21 1233333332 256676666432235699999999997643
|
| >d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Probab=99.68 E-value=5.7e-16 Score=136.75 Aligned_cols=217 Identities=12% Similarity=0.095 Sum_probs=122.7
Q ss_pred ceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhcc-CCcEEEEEcccChhHHHHHHHhhccCCCCcccC
Q 014953 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (415)
Q Consensus 8 ~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~-gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (415)
++.+||||||.||||. .+.||+|+||+|+ |||+|+++.+.++ .+++|+|++++....+.+.+... +.
T Consensus 4 ~i~~IIlAaG~GtRm~---~~~pK~l~~l~Gk-pli~~~l~~~~~~~~~~~Iivv~~~~~~~~~~~~~~~--------~~ 71 (226)
T d1w77a1 4 SVSVILLAGGQGKRMK---MSMPKQYIPLLGQ-PIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEES--------ID 71 (226)
T ss_dssp CEEEEEECCC----------CCCTTTSEETTE-EHHHHHHHHHHTCTTEEEEEEECCGGGTHHHHTTTTS--------CS
T ss_pred ceEEEEeCCccCccCc---CCCCceeeEECCe-eHHHHHHHHHHhhccccceeeccchhhhhhhhccccc--------cc
Confidence 4789999999999997 6799999999999 9999999999887 47889888876554433332211 11
Q ss_pred CceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHHHHHcCCcEEEEEE
Q 014953 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCL 164 (415)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~h~~~~~~~ti~~~ 164 (415)
. .+.++... ..+.++++.++..+.. ..+.+++..||. +...+ +..+++.+.+.+.. +...
T Consensus 72 ~-~~~~~~gg-----------~~r~~sv~~~l~~~~~----~~~~Vli~d~~~P~i~~~~i~~l~~~~~~~~~~--i~~~ 133 (226)
T d1w77a1 72 V-DLRFAIPG-----------KERQDSVYSGLQEIDV----NSELVCIHDSARPLVNTEDVEKVLKDGSAVGAA--VLGV 133 (226)
T ss_dssp S-EEEEECCC-----------SSHHHHHHHHHHTSCT----TCSEEEEEETTCTTCCHHHHHHHHHHHHHHSEE--EEEE
T ss_pred c-cccccccc-----------chhhhhhhhhHhhhcc----ccccceecccccccccHHHhhhhhhhhhccCce--eecc
Confidence 1 13332110 1357888888877653 257788889998 44444 67888877776653 3333
Q ss_pred EcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCC
Q 014953 165 PMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA 244 (415)
Q Consensus 165 ~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~~ 244 (415)
+..+. ..+ ...++......+... .....+-+.|+.+.|...++....+.
T Consensus 134 ~~~d~--~~~----~~~~~~~~~~~~r~~-------------------------~~~~~~p~~f~~~~l~~~~~~~~~~~ 182 (226)
T d1w77a1 134 PAKAT--IKE----VNSDSLVVKTLDRKT-------------------------LWEMQTPQVIKPELLKKGFELVKSEG 182 (226)
T ss_dssp ECCSC--CCC----BCTTSCBC------C-------------------------CEEEEEEEEECHHHHHHHHHHHHHSC
T ss_pred ccccc--eEE----EccCCceeecccchh-------------------------hhHHHHHHhHhhHHHHHHHHHHHhcC
Confidence 33221 100 112222222111111 12334567888888776655432221
Q ss_pred Ccccccchhh-hcccceEEEEEeCceEEecCCHHHHHHHHHhh
Q 014953 245 NDFGSEIIPA-SANEQFLKAYLFNDYWEDIGTIRSFFEANLAL 286 (415)
Q Consensus 245 ~~~~~~~l~~-l~~~~~i~~~~~~g~~~di~t~~~y~~an~~~ 286 (415)
..+ .|...- ...+.++..+.-+..-..|+||+|+..|...+
T Consensus 183 ~~~-TD~~~l~~~~g~~v~~v~g~~~n~KItt~eDl~~ae~lL 224 (226)
T d1w77a1 183 LEV-TDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERIL 224 (226)
T ss_dssp CCC-CC-CCTTGGGSSCCEEEECCTTCCCCCSHHHHHHHHHHH
T ss_pred CCc-CcHHHHHHHCCCceEEEECChhhcCcCCHHHHHHHHHHh
Confidence 111 222111 12366777665443345699999999997654
|
| >d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Thermotoga maritima [TaxId: 2336]
Probab=99.63 E-value=3.9e-15 Score=130.82 Aligned_cols=208 Identities=17% Similarity=0.210 Sum_probs=124.0
Q ss_pred EEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhcc-CCcEEEEEcccChhHHHHHHHhhccCCCCcccCCce
Q 014953 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGC 89 (415)
Q Consensus 11 aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~-gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 89 (415)
|||||||.|+||+ .+.||+|+||+|+ |||+|+++.+.++ ++++|+|++++.... ++.... .. ...
T Consensus 6 AIILAaG~gtRm~---~~~pK~l~~i~gk-pli~~~i~~~~~~~~~~~Iivv~~~~~~~---~~~~~~--~~-----~~~ 71 (221)
T d1vpaa_ 6 AILLAAGKGERMS---ENVPKQFLEIEGR-MLFEYPLSTFLKSEAIDGVVIVTRREWFE---VVEKRV--FH-----EKV 71 (221)
T ss_dssp EEEEECCCCGGGC---CSSCGGGCEETTE-ETTHHHHHHHHHCTTCSEEEEEECGGGHH---HHHTTC--CC-----TTE
T ss_pred EEEccCcCcccCC---CCCCcceeEECCE-EHHHHHHHHHHhccccccceEEecchhhh---HHHhhh--cc-----ccc
Confidence 8999999999997 6789999999999 9999999999886 589999998755432 222221 11 112
Q ss_pred EEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHHHHHcCCcEEEEEEEcC
Q 014953 90 VEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCLPMD 167 (415)
Q Consensus 90 v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~h~~~~~~~ti~~~~~~ 167 (415)
+.+.... .+...++..+...+.. ...+.+++++||. +...+ +..+++.+.+... .+...+..
T Consensus 72 ~~~~~~~-----------~~~~~s~~~~~~~~~~---~~~~~v~~~~~d~p~~~~~~i~~li~~~~~~~~--~~~~~~~~ 135 (221)
T d1vpaa_ 72 LGIVEGG-----------DTRSQSVRSALEFLEK---FSPSYVLVHDSARPFLRKKHVSEVLRRARETGA--ATLALKNS 135 (221)
T ss_dssp EEEEECC-----------SSHHHHHHHHHHHHGG---GCCSEEEEEETTSCCCCHHHHHHHHHHHHHHSE--EEEEEECC
T ss_pred ccccccc-----------ccccchHHHHHHHHHh---cCCCcEEEeccccccccHHHHHhhhhhhccccc--cccccccc
Confidence 3332211 1445566666555533 1258899999998 44444 6788887766543 23333332
Q ss_pred CCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCCCcc
Q 014953 168 DSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDF 247 (415)
Q Consensus 168 ~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~~~~~ 247 (415)
+ .+...+ +++...+ ++. ..+...+-+.|..+.+....++. ..+
T Consensus 136 d------~~~~~~-~~~~~~~---~~~-----------------------~~~~~~~~~~~~~~~l~~~~~~~----~~~ 178 (221)
T d1vpaa_ 136 D------ALVRVE-NDRIEYI---PRK-----------------------GVYRILTPQAFSYEILKKAHENG----GEW 178 (221)
T ss_dssp S------EEEEEE-TTEEEEE---CCT-----------------------TEEEEEEEEEEEHHHHHHHHTTC----CCC
T ss_pred c------eeEeec-Cccceec---chH-----------------------HHHHhhhhhhhhHHHHHHHHHhC----CCC
Confidence 2 112221 2222111 110 12334556677777776554332 112
Q ss_pred cccchhhhc-ccceEEEEEeCceEEecCCHHHHHHHHHhh
Q 014953 248 GSEIIPASA-NEQFLKAYLFNDYWEDIGTIRSFFEANLAL 286 (415)
Q Consensus 248 ~~~~l~~l~-~~~~i~~~~~~g~~~di~t~~~y~~an~~~ 286 (415)
.|....+. .+.++..+..+.....|+||+|+..|...+
T Consensus 179 -tD~~~l~~~~g~~v~~i~g~~~n~kI~t~eDl~~Ae~ll 217 (221)
T d1vpaa_ 179 -ADDTEPVQKLGVKIALVEGDPLCFKVTFKEDLELARIIA 217 (221)
T ss_dssp -SSSHHHHHTTTCCCEEEECCGGGCCCCSTTHHHHHHHHH
T ss_pred -ccHHHHHHHcCCceEEEecChhhcCCCCHHHHHHHHHHH
Confidence 33333332 256677666554455799999999887644
|
| >d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Neisseria gonorrhoeae [TaxId: 485]
Probab=99.63 E-value=4.4e-15 Score=130.96 Aligned_cols=219 Identities=11% Similarity=0.108 Sum_probs=117.7
Q ss_pred cceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccC-CcEEEEEcccChhHHHHHHHhhccCCCCccc
Q 014953 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~g-i~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (415)
++.-|||||||.|+||. .+.||+|++++|+ |||+|+++.+.+.+ ++.++||+++. +.+.+++...+ ..
T Consensus 2 ~K~iAIIlAaG~gtRm~---~~~pK~l~~i~gk-pli~~~i~~~~~~~~~~~iivv~~~~-~~~~~~~~~~~--~~---- 70 (226)
T d1vgwa_ 2 RKNIALIPAAGIGVRFG---ADKPKQYVEIGSK-TVLEHVLGIFERHEAVDLTVVVVSPE-DTFADKVQTAF--PQ---- 70 (226)
T ss_dssp CCEEEEEECC-------------CCSCCEETTE-EHHHHHHHHHHTCTTCCEEEEECCTT-CSTHHHHHHHC--TT----
T ss_pred CceEEEEeCCCCcccCC---cCCCeeeeEECCE-EHHHHHHHHHHhCCCccccceecchh-hhhhhhhcccc--cc----
Confidence 45669999999999996 6789999999999 99999999998875 56777776544 44455554432 11
Q ss_pred CCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHHHHHcCCcEEEEE
Q 014953 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISC 163 (415)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~h~~~~~~~ti~~ 163 (415)
...+..... ....+...++......... ...+.+++.+||. ++..+ +..+++.+...+...++ .
T Consensus 71 ---~~~~~~g~~-------~~~~s~~~~l~~~~~~~~~---~~~~~v~~~~~~~P~i~~~~i~~~i~~~~~~~~~~i~-~ 136 (226)
T d1vgwa_ 71 ---VRVWKNGGQ-------TRAETVRNGVAKLLETGLA---AETDNILVHDAARCCLPSEALARLIEQAGNAAEGGIL-A 136 (226)
T ss_dssp ---SEEECCCCS-------SHHHHHHHHHHHHHHHSSS---CTTSEEEECCTTCTTCCHHHHHHHHHHHTTCTTCEEE-E
T ss_pred ---eeecccccc-------ccchhhhHHHHHHHHhccc---ccccceeecccccccCcHHHHHHHHhhhcccccceee-c
Confidence 122221111 0012333334333322211 2256788889997 44544 78888888777665443 3
Q ss_pred EEcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC
Q 014953 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (415)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~ 243 (415)
.+..+ ..... +++.+....++..... .. .-..|..+.+...+....
T Consensus 137 ~~~~~------~~~~~-~~~~i~~~~~r~~~~~------------------------~~-~p~~f~~~~l~~~~~~~~-- 182 (226)
T d1vgwa_ 137 VPVAD------TLKRA-ESGQISATVDRSGLWQ------------------------AQ-TPQLFQAGLLHRALAAEN-- 182 (226)
T ss_dssp EECCS------CEEEE-SSSBEEEEECCTTEEE------------------------EE-EEEEEEHHHHHHHHHC----
T ss_pred ccccc------cceec-cCCeEEeccchHHHHH------------------------HH-hhhcccHHHHHHHHHHhh--
Confidence 33322 22222 4567766554433211 11 123556666655544321
Q ss_pred CCcccccchhhh-cccceEEEEEeCceEEecCCHHHHHHHHHh
Q 014953 244 ANDFGSEIIPAS-ANEQFLKAYLFNDYWEDIGTIRSFFEANLA 285 (415)
Q Consensus 244 ~~~~~~~~l~~l-~~~~~i~~~~~~g~~~di~t~~~y~~an~~ 285 (415)
...+ .|...-+ ..+.++..+.-+.....|+||+|+..|...
T Consensus 183 ~~~~-tD~~~l~~~~g~~v~~v~g~~~nikItt~eDl~~ae~l 224 (226)
T d1vgwa_ 183 LGGI-TDEASAVEKLGVRPLLIQGDARNLKLTQPQDAYIVRLL 224 (226)
T ss_dssp --CC-CSHHHHHHTTTCCCEEEECCTTCCCCCSHHHHHHHHHH
T ss_pred cCCC-CcHHHHHHHcCCceEEEECCccccCcCCHHHHHHHHHH
Confidence 1111 2222212 236677777655556789999999999653
|
| >d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=99.53 E-value=2.3e-14 Score=115.52 Aligned_cols=94 Identities=38% Similarity=0.591 Sum_probs=83.4
Q ss_pred CCCeeecCCccccceECCCCEEcceEEeeeEEccCcEECCCcEEeecEEeCCccccchhHHHh---hhhCCCcceEeCCC
Q 014953 309 LPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVAS---LLAEGRVPVGIGEN 385 (415)
Q Consensus 309 ~~~~~i~~~~i~~~~ig~~~~I~~~~i~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~---~~~~~~~~~~Ig~~ 385 (415)
.||+++.++.+.+|+||+||.|+++.+++|+||++|.||+++.|.++++++++.+.....+.. .++++ +.||++
T Consensus 2 lPp~~i~~~~i~~s~Ig~g~~I~~~~i~~s~IG~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~i~~~---v~Ig~~ 78 (135)
T d1yp2a1 2 LPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVP---IGIGKN 78 (135)
T ss_dssp CCCEEEEEEEEEEEEECTTCEEEEEEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCC---SEECTT
T ss_pred CCCcccCCCEEEeCEECCCCEEeCCEEeccccCCcEEECCCCEEEcCEEECCCEEeCCcEEEecceEcCCC---CEECcc
Confidence 478888888889999999999998889999999999999999999999999999887776653 33455 899999
Q ss_pred CEEeeeEECCCeEEcCCccc
Q 014953 386 TKIKYEQLKPICHIVETKYD 405 (415)
Q Consensus 386 ~~i~~~~i~~~~~i~~~~~~ 405 (415)
|+|++++|+++++|++++..
T Consensus 79 ~~I~~~iIg~~~~IG~g~~i 98 (135)
T d1yp2a1 79 CHIKRAIIDKNARIGDNVKI 98 (135)
T ss_dssp CEEESEEECTTCEECTTCEE
T ss_pred eEeccceecCCCEECCCcEE
Confidence 99999999999999999874
|
| >d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: TTHA0179-like domain: Uncharacterized protein TTHA0179 species: Thermus thermophilus [TaxId: 274]
Probab=99.51 E-value=4.2e-15 Score=131.56 Aligned_cols=119 Identities=17% Similarity=0.182 Sum_probs=88.3
Q ss_pred cceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccC
Q 014953 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (415)
++..|||||||.|+||++++. .||+|+||+|+ |||+|+++++.++|++++++++++..... .
T Consensus 1 M~~~avIlA~G~~~r~~r~g~-~~K~L~~i~Gk-pli~~~~~~l~~~~~~~vvv~~~~~~~~~---------------~- 62 (231)
T d2dpwa1 1 MRPSAIVLAGGKEAWAERFGV-GSKALVPYRGR-PMVEWVLEALYAAGLSPVYVGENPGLVPA---------------P- 62 (231)
T ss_dssp CCCEEEEECCCBCSGGGTTTC-SBGGGSEETTE-ETHHHHHHHHHHTTCEEEEESCCSSCSSC---------------C-
T ss_pred CCceEEEECCCCCCCCCCCCC-CCceeeEECCe-eHHHHHHHHHHhcCCCeEEeeeeccccce---------------e-
Confidence 467899999999999999883 57999999999 99999999999999999988887653210 0
Q ss_pred CceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHHHHHcCCcEEEEEE
Q 014953 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCL 164 (415)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~h~~~~~~~ti~~~ 164 (415)
.... . ...|+.++++.++..+ .+++++++||. +++.+ +..+++.+.+ .+..+.+.
T Consensus 63 ---~~~~---~--------~~~~~~~~v~~al~~~-------~~~~lv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~~ 119 (231)
T d2dpwa1 63 ---ALTL---P--------DRGGLLENLEQALEHV-------EGRVLVATGDIPHLTEEAVRFVLDKAPE--AALVYPIV 119 (231)
T ss_dssp ---SEEE---C--------CCSSHHHHHHHHHHTC-------CSEEEEEETTCTTCCHHHHHHHHHHCCS--CSEEEEEE
T ss_pred ---eeec---c--------cchHHHHHHHHHHHhh-------cCceEEeeCCCccCCHHHHHHHHHHhhh--cCceEEEE
Confidence 1110 1 1248999999998876 37899999999 54544 7777775543 34444444
Q ss_pred Ec
Q 014953 165 PM 166 (415)
Q Consensus 165 ~~ 166 (415)
+.
T Consensus 120 ~~ 121 (231)
T d2dpwa1 120 PK 121 (231)
T ss_dssp EH
T ss_pred ec
Confidence 43
|
| >d1vh1a_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KdsB [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Escherichia coli, KdsB [TaxId: 562]
Probab=99.45 E-value=3.7e-12 Score=113.20 Aligned_cols=237 Identities=16% Similarity=0.196 Sum_probs=145.1
Q ss_pred eEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCc
Q 014953 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (415)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (415)
..|||+|.|.++|+ .-|+|.+|+|+ |||+|+++++.++++++|+|++. .+.+.++..+. +. .
T Consensus 2 ~i~iIpAR~gSkri------p~KnL~~i~Gk-pLI~~~i~~a~~s~i~~iiVsTd--~~~i~~~~~~~---g~------~ 63 (246)
T d1vh1a_ 2 FVVIIPARYASTRL------PGKPLVDINGK-PMIVHVLERARESGAERIIVATD--HEDVARAVEAA---GG------E 63 (246)
T ss_dssp CEEEEECCCCCC--------CCTTTCEETTE-EHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHHT---TC------E
T ss_pred EEEEEecCCCCcCC------CCchhhhcCCc-cHHHHHHHHHHHcCCCcEEEEec--Cccccchhhcc---cc------c
Confidence 46999999999998 34999999999 99999999999999999999885 45555555432 11 1
Q ss_pred eEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeec-cc-ChHHHHHHHHHcCCcEEEEEEEc
Q 014953 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLY-RM-DYMDFVQNHRQSGADITISCLPM 166 (415)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~-~~-~l~~~l~~h~~~~~~~ti~~~~~ 166 (415)
+...+.... .|+......+..+... ..+.++.+.||..+ +. ++..+++.+.....+......+.
T Consensus 64 -v~~~~~~~~---------~~~~~~~~~~~~~~~~----~~~~i~~~~~d~pl~~~~~i~~~i~~~~~~~~~~~~~~~~~ 129 (246)
T d1vh1a_ 64 -VCMTRADHQ---------SGTERLAEVVEKCAFS----DDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPI 129 (246)
T ss_dssp -EEECC--------------CHHHHHHHHHHTTCC----TTCEEEECCTTCTTCCHHHHHHHHHHHHHSSSSEEEEEEEC
T ss_pred -ceeeccccc---------ccchHHHHHHHhhccc----ccceeeeeccccccchhhHHHHHhhhhcccccccccccccc
Confidence 222222211 2454444333332221 25678889999944 33 37888888888887776666655
Q ss_pred CCCc---CCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC
Q 014953 167 DDSR---ASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (415)
Q Consensus 167 ~~~~---~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~ 243 (415)
.... ......+..+.+|++..+.+.+......... ...+.....++...|+|+|+++.|..... ..+.
T Consensus 130 ~~~~~~~~~~~vk~v~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~giy~~~~~~l~~~~~-~~~s 200 (246)
T d1vh1a_ 130 HNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFA--------EGLETVGDNFLRHLGIYGYRAGFIRRYVN-WQPS 200 (246)
T ss_dssp CCHHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHHHS--------SCCCCCCSCCEEEEEEEEEEHHHHHHHHH-SCCC
T ss_pred cchhcccCCCcceeeecccCcccccccccchhhhhhhh--------hhhhccchhhheecceeeechhhhhhhcc-CCCC
Confidence 4311 1223345667788888887665543211000 00011123466788999999999865432 1111
Q ss_pred CCccc--ccchhhhcccceEEEEEeCce-EEecCCHHHHHHHHHhh
Q 014953 244 ANDFG--SEIIPASANEQFLKAYLFNDY-WEDIGTIRSFFEANLAL 286 (415)
Q Consensus 244 ~~~~~--~~~l~~l~~~~~i~~~~~~g~-~~di~t~~~y~~an~~~ 286 (415)
...-. -+.+..+-.+.++.++..+.. ..||+|++||..|...|
T Consensus 201 ~~E~~e~le~lR~i~~g~~i~~~~~~~~~~~~IDt~~Dl~~a~k~m 246 (246)
T d1vh1a_ 201 PLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRAEM 246 (246)
T ss_dssp HHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHC
T ss_pred hHHHHHhHHHHHHHHCCCceEEEEecCCCCCCCCCHHHHHHHHhcC
Confidence 00000 123333334678988888764 68999999999997643
|
| >d1vica_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Haemophilus influenzae [TaxId: 727]
Probab=99.44 E-value=4.8e-12 Score=113.00 Aligned_cols=242 Identities=17% Similarity=0.197 Sum_probs=147.4
Q ss_pred eEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCcccCCc
Q 014953 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (415)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (415)
..|||+|.|.++|+ ..|.|.+++|+ |||.|+++++.++++++|+|++.. +++.+...+. +. .
T Consensus 2 ~~~iIpAR~gSkRl------p~Knl~~i~Gk-pLI~~~i~~a~~s~i~~IiVsTd~--~~i~~~~~~~---~~------~ 63 (255)
T d1vica_ 2 FTVIIPARFASSRL------PGKPLADIKGK-PMIQHVFEKALQSGASRVIIATDN--ENVADVAKSF---GA------E 63 (255)
T ss_dssp CEEEEECCCCCSSS------TTGGGCEETTE-EHHHHHHHHHHHTTCSEEEEEESC--HHHHHHHHHT---TC------E
T ss_pred EEEEEecCCCCCCC------CCchhhhhCCc-CHHHHHHHHHHHCCCCeEEEEcCC--cccchhhhhh---cc------c
Confidence 46899999999998 23999999999 999999999999999999888754 3444443321 11 1
Q ss_pred eEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeec-cc-ChHHHHHHHHHcCCcEEEEEEEc
Q 014953 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLY-RM-DYMDFVQNHRQSGADITISCLPM 166 (415)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~-~~-~l~~~l~~h~~~~~~~ti~~~~~ 166 (415)
+........ .|+..+...+..+... ..+.++++.||..+ +. ++..+++.+.......+......
T Consensus 64 -~~~~~~~~~---------~~~~~~~~~~~~~~~~----~~~~iv~~~~d~p~~~~~~i~~~i~~~~~~~~~~~~~~~~~ 129 (255)
T d1vica_ 64 -VCMTSVNHN---------SGTERLAEVVEKLAIP----DNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKI 129 (255)
T ss_dssp -EEECCCSSC---------CHHHHHHHHHHHTTCC----TTCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEEEC
T ss_pred -cceeeeccC---------CcchhhHHHHHHhhcc----CCceEEEEecchhhhhhhhhhhhhhhcccccccccceeeec
Confidence 222222211 3555555444333321 25678889999943 33 37888888888877777666654
Q ss_pred CCC---cCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC
Q 014953 167 DDS---RASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (415)
Q Consensus 167 ~~~---~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~ 243 (415)
... ..........++++.+..+.+.+........... ...........+....|+|+|+++.+...... .+.
T Consensus 130 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~-~~~ 204 (255)
T d1vica_ 130 HDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFMNL----QDVQKVQLSDAYLRHIGIYAYRAGFIKQYVQW-APT 204 (255)
T ss_dssp CCHHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHHHTTC----SCGGGCCCCTTCEEEEEEEEEEHHHHHHHHHS-CCC
T ss_pred cchhhccCccceeeeeccCCcccccccccccccchhhhhc----cchhhcccccchheeeeeecccHHHHhhhhcc-CCC
Confidence 321 1123344566677888888776654321100000 00011111234566789999999988755322 111
Q ss_pred CCcccc--cchhhhcccceEEEEEeCc-eEEecCCHHHHHHHHHhhc
Q 014953 244 ANDFGS--EIIPASANEQFLKAYLFND-YWEDIGTIRSFFEANLALT 287 (415)
Q Consensus 244 ~~~~~~--~~l~~l~~~~~i~~~~~~g-~~~di~t~~~y~~an~~~l 287 (415)
.....+ +.+..+-.+.++..+..+. .+.||+|++||..|...+-
T Consensus 205 ~le~~e~le~lr~l~ng~~I~~~~~~~~~~idIDt~eDl~~ae~ilk 251 (255)
T d1vica_ 205 QLENLEKLEQLRVLYNGERIHVELAKEVPAVGVDTAEDLEKVRAILA 251 (255)
T ss_dssp HHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHH
T ss_pred hhHHHHhHHHHHHHHCCCceeEEEeCCCCCcCCCCHHHHHHHHHHHH
Confidence 000001 1222333567888887765 4789999999999976553
|
| >d1h7ea_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KpsU [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Escherichia coli, KpsU [TaxId: 562]
Probab=99.44 E-value=3.1e-12 Score=113.55 Aligned_cols=229 Identities=17% Similarity=0.237 Sum_probs=138.9
Q ss_pred ceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhcc-CCcEEEEEcccChhHHHHHHHhhccCCCCcccC
Q 014953 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (415)
Q Consensus 8 ~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~-gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (415)
+.-|||+|.|.++|+ ..|+|++++|+ |||+|+++++.+. ++++|+|++... .+.+... .+ +
T Consensus 2 k~i~iIpAR~~SkRl------~~Knl~~i~Gk-Pli~~~i~~a~~~~~~d~Iiv~td~~--~i~~~~~-~~--------~ 63 (245)
T d1h7ea_ 2 KAVIVIPARYGSSRL------PGKPLLDIVGK-PMIQHVYERALQVAGVAEVWVATDDP--RVEQAVQ-AF--------G 63 (245)
T ss_dssp CEEEEEECCSCCSSS------TTGGGCEETTE-EHHHHHHHHHHTCTTCCEEEEEESCH--HHHHHHH-HT--------T
T ss_pred CEEEEEcCCCCCcCC------CCccccccCCc-cHHHHHHHHHHhCCCCCeEEEecccc--cchhhhh-hc--------C
Confidence 567999999999998 35999999999 9999999999876 678888887543 3333332 11 1
Q ss_pred CceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCeec-cc-ChHHHHHHHHHcCCcEEEEEE
Q 014953 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLY-RM-DYMDFVQNHRQSGADITISCL 164 (415)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~i~-~~-~l~~~l~~h~~~~~~~ti~~~ 164 (415)
.. + +...... .++.+.+..+...++ .+.++++.||..+ +. .+..+++.+............
T Consensus 64 ~~-~-~~~~~~~---------~~~~~~~~~~~~~~~------~d~vv~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~~~~ 126 (245)
T d1h7ea_ 64 GK-A-IMTRNDH---------ESGTDRLVEVMHKVE------ADIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLC 126 (245)
T ss_dssp CE-E-EECCSCC---------SSHHHHHHHHHHHSC------CSEEEECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred ce-E-EEecCcc---------ccccHHHHHHHHhcC------CCEEEEecchhhhcccccchhhhhcccccccccccccc
Confidence 11 1 1111111 245566666666664 4788889999944 33 367888877766554333332
Q ss_pred EcCC--CcC-CcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhC
Q 014953 165 PMDD--SRA-SDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF 241 (415)
Q Consensus 165 ~~~~--~~~-~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~ 241 (415)
.... ... ...........+....+...+..... ...........|+|.|+++.|..... ..
T Consensus 127 ~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~g~~~~~~~~l~~~~~-~~ 190 (245)
T d1h7ea_ 127 HAISAAEAAEPSTVKVVVNTRQDALYFSRSPIPYPR---------------NAEKARYLKHVGIYAYRRDVLQNYSQ-LP 190 (245)
T ss_dssp EEECHHHHTCTTSCEEEECTTCBEEEEESSCSSCCT---------------TGGGCCEEEEEEEEEEEHHHHHHGGG-SC
T ss_pred cccccccccCCcceeeccchhhhhhhhhhhhhhhhh---------------cccccccceeeeeEEeeecccccccc-cc
Confidence 2211 001 11223334444556666554443211 01112356778999999998875432 11
Q ss_pred CCCCcccc--cchhhhcccceEEEEEeCceEEecCCHHHHHHHHHhhc
Q 014953 242 PTANDFGS--EIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALT 287 (415)
Q Consensus 242 ~~~~~~~~--~~l~~l~~~~~i~~~~~~g~~~di~t~~~y~~an~~~l 287 (415)
+......+ +.+..+-.+.++.++..++.+.+|+|++||..|...+.
T Consensus 191 ~s~~e~~e~ie~lr~l~ng~~I~~~~~~~~~~~IDt~~Dl~~a~~il~ 238 (245)
T d1h7ea_ 191 ESMPEQAESLEQLRLMNAGINIRTFEVAATGPGVDTPACLEKVRALMA 238 (245)
T ss_dssp CCHHHHHHTCTTHHHHHTTCCEEEEECCCCCCCSSSHHHHHHHHHHHH
T ss_pred CChhhhhhhHHHHHHHHCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHH
Confidence 11100011 22332335678999998888899999999999976554
|
| >d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.36 E-value=1.4e-12 Score=93.47 Aligned_cols=62 Identities=19% Similarity=0.262 Sum_probs=56.2
Q ss_pred cceECCCCEEc-ceEEe-eeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhCCCcceEeCCCCEEeeeEECCCeE
Q 014953 321 DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKYEQLKPICH 398 (415)
Q Consensus 321 ~~~ig~~~~I~-~~~i~-~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~~i~~~~~ 398 (415)
++.||++|.|+ ++.|+ ++.||+||+||++|.|.+|.|+++ +.|+++|.|++|+|+++++
T Consensus 14 ~v~IG~~~~I~~~~~i~g~~~IG~~v~Ig~~~~i~~~~Ig~~-------------------~~I~~~s~i~~~~Ig~~~~ 74 (78)
T d1fxja1 14 TLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDD-------------------CEISPYTVVEDANLAAACT 74 (78)
T ss_dssp EEEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTT-------------------CEECTTCEEESEEECTTCE
T ss_pred cEEECCCCEECCccEEeCCcEECCCCEECCCeEEecCEECCC-------------------CEEcCCcEEECCEECCCCE
Confidence 56677777777 57775 689999999999999999999999 8999999999999999999
Q ss_pred EcC
Q 014953 399 IVE 401 (415)
Q Consensus 399 i~~ 401 (415)
|||
T Consensus 75 IGP 77 (78)
T d1fxja1 75 IGP 77 (78)
T ss_dssp ESC
T ss_pred ECc
Confidence 997
|
| >d1eyra_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP acylneuraminate synthetase species: Neisseria meningitidis [TaxId: 487]
Probab=99.30 E-value=2.2e-11 Score=106.27 Aligned_cols=216 Identities=16% Similarity=0.124 Sum_probs=132.0
Q ss_pred ceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccC-CcEEEEEcccChhHHHHHHHhhccCCCCcccC
Q 014953 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (415)
Q Consensus 8 ~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~g-i~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (415)
+.-|||+|.|.++|+ ..|+|++++|+ |||+|+++.+.+++ +++|+|.+. .+.+.+.... + +
T Consensus 4 ~~iaiIpar~~S~R~------p~K~l~~i~gk-pLi~~~i~~~~~s~~~~~Iiv~td--~~~i~~i~~~-~--~------ 65 (225)
T d1eyra_ 4 QNIAVILARQNSKGL------PLKNLRKMNGI-SLLGHTINAAISSKCFDRIIVSTD--GGLIAEEAKN-F--G------ 65 (225)
T ss_dssp EEEEEEECCSCCSSS------TTGGGCEETTE-EHHHHHHHHHHHHTCCSEEEEEES--CHHHHHHHHH-T--T------
T ss_pred CEEEEEccCCCCcCC------CCccccccCCe-EHHHHHHHHHHHcCCCceEEEeec--cchhhhhhhh-h--c------
Confidence 345899999999998 35999999999 99999999999987 578777663 4445554432 2 1
Q ss_pred CceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHHHHHcCCcEEEEEE
Q 014953 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCL 164 (415)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~h~~~~~~~ti~~~ 164 (415)
.. + +........ ...++.+.++.+...+.. ..+.++.+.||. +.+.. +.++++.+.+.+.+..+.+.
T Consensus 66 ~~-~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~----~~d~ii~~~~~~P~~~~~~I~~~i~~~~~~~~d~~~~~~ 134 (225)
T d1eyra_ 66 VE-V-VLRPAELAS-----DTASSISGVIHALETIGS----NSGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSAC 134 (225)
T ss_dssp CE-E-EECCHHHHS-----TTCCHHHHHHHHHHHHTC----CSEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEEE
T ss_pred ce-e-eeecccccc-----ccccchhhcccccccccc----ccceEEEeeccccccccccccccceeeccccccccceee
Confidence 11 1 111111100 013566777777766643 257899999999 44443 78888888877777666665
Q ss_pred EcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCCC
Q 014953 165 PMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTA 244 (415)
Q Consensus 165 ~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~~ 244 (415)
+... ...+.. ...+++.+..+........ ..+.....+..+.++|+++.+.+... ..
T Consensus 135 ~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~y~~~g~iy~~~~~~l~~~-~~----- 191 (225)
T d1eyra_ 135 PMEH--HPLKTL-LQINNGEYAPMRHLSDLEQ--------------PRQQLPQAFRPNGAIYINDTASLIAN-NC----- 191 (225)
T ss_dssp ECSS--CTTSCE-EECSSSCEEESSCGGGGTS--------------CGGGSCCEEEEEEEEEEEEHHHHHHH-TS-----
T ss_pred cccc--cccccc-ccccccccccccccccccc--------------ccccCcceeeecceeEEeeHHHHHHc-CC-----
Confidence 5543 122333 3334555554432221111 11111234677889999999877532 00
Q ss_pred CcccccchhhhcccceEEEEEeCc-eEEecCCHHHHHHHHHhh
Q 014953 245 NDFGSEIIPASANEQFLKAYLFND-YWEDIGTIRSFFEANLAL 286 (415)
Q Consensus 245 ~~~~~~~l~~l~~~~~i~~~~~~g-~~~di~t~~~y~~an~~~ 286 (415)
.-+.++..+..+. ..+||+|++||..|...+
T Consensus 192 -----------~~~~~~~~~~i~~~~~~dIdt~eDl~~ae~i~ 223 (225)
T d1eyra_ 192 -----------FFIAPTKLYIMSHQDSIDIDTELDLQQAENIL 223 (225)
T ss_dssp -----------SCCSSCEEEECCTTTTCCCCSHHHHHHHHHHH
T ss_pred -----------ccCCCeEEEEcCccceECCCCHHHHHHHHHHh
Confidence 1123444455443 357999999999997643
|
| >d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Molybdenum cofactor biosynthesis protein MobA domain: Molybdenum cofactor biosynthesis protein MobA species: Escherichia coli [TaxId: 562]
Probab=99.27 E-value=4.6e-12 Score=107.68 Aligned_cols=110 Identities=16% Similarity=0.192 Sum_probs=75.0
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccCCcEEEEEcccChhHHHHHHHhhccCCCCccc
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (415)
|..+.|||||||.|+||+ ..||+|++++|+ |||+|+++.+... +.+++|+++...+... .. +
T Consensus 1 M~~i~~iILAgG~ssRmG----~~~K~ll~~~g~-~ll~~~l~~l~~~-~~~ivv~~~~~~~~~~-----~~----~--- 62 (188)
T d1e5ka_ 1 MTTITGVVLAGGKARRMG----GVDKGLLELNGK-PLWQHVADALMTQ-LSHVVVNANRHQEIYQ-----AS----G--- 62 (188)
T ss_dssp CCSEEEEEECCCCCSSSC----SSCGGGSEETTE-EHHHHHHHHHHHH-CSCEEEECSSSHHHHH-----TT----S---
T ss_pred CCceeEEEEcCCCCcCCC----CCCcccCEECCE-ehhHHHHhhhccc-ccccccccCccHHhhh-----hc----C---
Confidence 566889999999999996 248999999999 9999999999876 5678888776543221 11 1
Q ss_pred CCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHH
Q 014953 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQ 150 (415)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~ 150 (415)
+.+..+.... ..|...++..+..... .+.+++++||+ +.+.+ +..+++
T Consensus 63 ----~~v~~d~~~~-------~~~~~~g~~~~~~~~~------~~~vlv~~~D~P~i~~~~i~~L~~ 112 (188)
T d1e5ka_ 63 ----LKVIEDSLAD-------YPGPLAGMLSVMQQEA------GEWFLFCPCDTPYIPPDLAARLNH 112 (188)
T ss_dssp ----CCEECCCTTC-------CCSHHHHHHHHHHHCC------SSEEEEEETTCTTCCTTHHHHHHH
T ss_pred ----CCcccccccc-------ccchhHHHHHHHHhcc------cceEEEeccCCCCCCHHHHHHHHH
Confidence 1122111110 1356666766665443 58899999999 55666 455544
|
| >d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: IspD/IspF bifunctional enzyme, CDP-me synthase domain species: Campylobacter jejuni [TaxId: 197]
Probab=99.25 E-value=2.6e-12 Score=110.55 Aligned_cols=122 Identities=16% Similarity=0.261 Sum_probs=84.6
Q ss_pred eEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccC-CcEEEEEcccChhHHHHHHHhhccCCCCcccCC
Q 014953 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVTFGD 87 (415)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~g-i~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~ 87 (415)
+.+||||||.|+||+ .+.||+|++++|+ |||+|+++++.+.. ++.|+|++. ..+ ++.. +...
T Consensus 2 is~IILAaG~g~Rmg---~~~pK~~~~i~gk-pii~~~l~~~~~~~~~~~Ivvv~~-~~~----~~~~---~~~~----- 64 (205)
T d1w55a1 2 MSLIMLAAGNSTRFN---TKVKKQFLRLGND-PLWLYATKNLSSFYPFKKIVVTSS-NIT----YMKK---FTKN----- 64 (205)
T ss_dssp EEEEEECCSCCTTTC---SSSCGGGCEEBTE-EHHHHHHHHHHTTSCCSCEEEEES-CHH----HHHT---TCSS-----
T ss_pred eEEEEeCCccCeeCC---cCCCceeEEECCE-EHHHHHHHHHHhhccccccccccc-ccc----cccc---cccc-----
Confidence 578999999999997 6789999999999 99999999998864 677766654 322 2221 1111
Q ss_pred ceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-ecccC-hHHHHHHHHHcCCcEEEEEEE
Q 014953 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCLP 165 (415)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~~-l~~~l~~h~~~~~~~ti~~~~ 165 (415)
+.++... ....++++.++..++ .+.+++..||. +++.+ +..+++.+.+. ++.+.+.+
T Consensus 65 --~~~v~Gg-----------~~r~~Sv~~gl~~~~------~~~VlIhd~~rP~i~~~~i~~li~~~~~~--~~~i~~~~ 123 (205)
T d1w55a1 65 --YEFIEGG-----------DTRAESLKKALELID------SEFVMVSDVARVLVSKNLFDRLIENLDKA--DCITPALK 123 (205)
T ss_dssp --SEEEECC-----------SSHHHHHHHHHTTCC------SSEEEEEETTCTTCCHHHHHHHHTTGGGC--SEEEEEEC
T ss_pred --ccccccc-----------cchhhhhhhhhhhhh------hcceeeeccCcccCcHHHHHHHHhhhhcc--cccccccc
Confidence 2222110 246788998888775 47889999999 55555 67787766544 44555555
Q ss_pred cCC
Q 014953 166 MDD 168 (415)
Q Consensus 166 ~~~ 168 (415)
..+
T Consensus 124 ~~d 126 (205)
T d1w55a1 124 VAD 126 (205)
T ss_dssp CCS
T ss_pred ccc
Confidence 543
|
| >d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: PglD-like domain: Acetyltransferase PglD species: Campylobacter jejuni [TaxId: 197]
Probab=99.14 E-value=1.2e-10 Score=99.03 Aligned_cols=127 Identities=14% Similarity=0.057 Sum_probs=86.2
Q ss_pred eEEecCCHHHHHHHHHhhcCC-CCCCCccCCCCCccccCccC--CCeee-cCCccc-cceECCCCEEc-ceEEe-eeEEc
Q 014953 269 YWEDIGTIRSFFEANLALTAH-PPMFSFYDATKPIYTSRRNL--PPSKI-DDSKIV-DSIISHGSFIT-SSFIE-HSVVG 341 (415)
Q Consensus 269 ~~~di~t~~~y~~an~~~l~~-~~~~~~~~~~~~~~~~~~i~--~~~~i-~~~~i~-~~~ig~~~~I~-~~~i~-~svig 341 (415)
++.-++++..-.+....+... ....++++|++.+.+.+.+. +++.+ +++.|. ++.||++|.|. ++.|. ++.||
T Consensus 49 ~~iaIG~~~~R~~~~~~~~~~~~~~~~~I~p~a~I~~~~~I~~g~g~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig 128 (193)
T d3bswa1 49 FFIAIGNNEIRKKIYQKISENGFKIVNLIHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIG 128 (193)
T ss_dssp EEECCSCHHHHHHHHHHHHHTTCCBCCEECTTCEECTTSEECTTSCCEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred EEEEECCcHHHHHHHHHhhhhccccceecCCCcEEeeeeEEccccCceEeeeeeecCCceeeeccccccccccceeeecc
Confidence 345678876433333333332 23445677877777766663 34666 556664 67777777776 56663 67777
Q ss_pred cCcEECCCcEEee-cEEeCCccccchhHHHhhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 342 IRSRINANVHLKD-TMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 342 ~~~~ig~~~~i~~-sii~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
++|.+++++.+.+ +.|+++ |.||.|+.|. ++.||+++.|++++.+.+.+..++.
T Consensus 129 ~~~~i~~~~~i~g~v~Ig~~-------------------~~IG~~s~I~~~v~Ig~~~~IgagsvV~~dv~~~~~ 184 (193)
T d3bswa1 129 EFSHVSVGAKCAGNVKIGKN-------------------CFLGINSCVLPNLSLADDSILGGGATLVKNQDEKGV 184 (193)
T ss_dssp TTCEECTTCEECTTCEECTT-------------------CEECTTCEECTTCEECTTCEECTTCEECSCBCSCCE
T ss_pred ccccccccccccccceeecc-------------------ccCCceeeEcCCeEECCCCEECCCCEECcCCCCCcE
Confidence 7777777777766 555555 8899999987 8999999999999988888776654
|
| >d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP acylneuraminate synthetase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.10 E-value=7e-10 Score=96.77 Aligned_cols=217 Identities=14% Similarity=0.169 Sum_probs=127.0
Q ss_pred cceEEEEEcCCCCCcccccccCCcccceeeCCcceeehhehhhhhccC-CcEEEEEcccChhHHHHHHHhhccCCCCccc
Q 014953 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~g-i~~I~vv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (415)
+++.|||+|.|.++|| .-|+|++++|+ |||+|+++++.+++ +++|+|.+. .+.+.+...+. +
T Consensus 2 ~ki~aiIpaR~~S~Rl------p~K~l~~i~gk-pLi~~~i~~~~ks~~id~Iivstd--~~~i~~~~~~~---~----- 64 (228)
T d1qwja_ 2 PHLAALVLARGGSKGI------PLKNIKRLAGV-PLIGWVLRAALDAGVFQSVWVSTD--HDEIENVAKQF---G----- 64 (228)
T ss_dssp CCEEEEEECCSCCSSS------SCTTTSEETTE-EHHHHHHHHHHHHTCCSEEEEEES--CHHHHHHHHHT---T-----
T ss_pred CCEEEEeccCCCCCCC------CCcchhhhCCe-eHHHHHHHHHHhcCCcceEEEecc--hhhhhhhhhhc---C-----
Confidence 5788999999999999 25999999999 99999999999876 677777764 34444444321 1
Q ss_pred CCceEEEecCccCCCCCCCccccchHHHHHHhhhhhcCCCCCCcCeEEEEcCCe-eccc-ChHHHHHHHHHcCCcEEEEE
Q 014953 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRM-DYMDFVQNHRQSGADITISC 163 (415)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~~~~lv~~gD~-i~~~-~l~~~l~~h~~~~~~~ti~~ 163 (415)
.. + +......... .....+.+.++...... .+.++++.+|. +.+. ++.++++.+.+.+.+..+.+
T Consensus 65 -~~-~-~~~~~~~~~~-----~~~~~~~i~~~~~~~~~-----~~~iv~~~~~~P~~~~~~I~~~i~~~~~~~~d~~~~~ 131 (228)
T d1qwja_ 65 -AQ-V-HRRSSETSKD-----SSTSLDAIVEFLNYHNE-----VDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSV 131 (228)
T ss_dssp -CE-E-EECCGGGSST-----TCCHHHHHHHHHTTCTT-----CSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEE
T ss_pred -cc-c-cccccccccc-----cchhhhhhhhccccccc-----cceeeeecccccccCchhhhhhhhhhhccCccccccc
Confidence 11 1 1111111100 13567777776654433 57888888998 3333 48899999988888877666
Q ss_pred EEcCCCcCCcccEEEECCCCCeEEEEEcCCcccccccccccccccccccccccccceeeeeEEEEeHHHHHHHHhhhCCC
Q 014953 164 LPMDDSRASDFGLMKINNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT 243 (415)
Q Consensus 164 ~~~~~~~~~~~g~v~~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi~~~~~l~~~l~~~~~~ 243 (415)
.+.... .+........+........+... ...+.....+..+.++|+++.+++.. .
T Consensus 132 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--------------~~~qd~~~~y~~ng~~~~~k~~~~~~---~---- 187 (228)
T d1qwja_ 132 VRRHQF---RWSEIQKGVREVTEPLNLNPAKR--------------PRRQDWDGELYENGSFYFAKRHLIEM---G---- 187 (228)
T ss_dssp EEECCC---EECCCCSSTTCCCCBSSSBTTBC--------------CCTTTSCCEEEEEEEEEEEEHHHHHT---T----
T ss_pred cccccc---cchhhhhhccccccchhhhhhhc--------------cccccccceeeeeeEEEEEeHHHHhh---C----
Confidence 554321 11111000001000000000000 00111112355667788888776641 1
Q ss_pred CCcccccchhhhcccceEEEEEeCc-eEEecCCHHHHHHHHHhhcC
Q 014953 244 ANDFGSEIIPASANEQFLKAYLFND-YWEDIGTIRSFFEANLALTA 288 (415)
Q Consensus 244 ~~~~~~~~l~~l~~~~~i~~~~~~g-~~~di~t~~~y~~an~~~l~ 288 (415)
. +.+.+...|..+. ...||+|++|+..|.+.+..
T Consensus 188 --~---------~~~~k~~~~~i~~~~~idIDt~eD~~~Ae~~l~k 222 (228)
T d1qwja_ 188 --Y---------LQGGKMAYYEMRAEHSVDIDVDIDWPIAEQRVLR 222 (228)
T ss_dssp --C---------SSCSSEEEEECCGGGCCCHHHHCSHHHHHHHHHH
T ss_pred --C---------cCCCCEEEEEcCccceECCCCHHHHHHHHHHHHH
Confidence 0 1234566666653 35799999999999877653
|
| >d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=99.09 E-value=1.3e-10 Score=93.00 Aligned_cols=97 Identities=18% Similarity=0.100 Sum_probs=75.7
Q ss_pred cCccCCCeeecCCccccceECCCCEEc-ceEEeeeEEccC-------------------cEECCCcEEeecEEeCCcccc
Q 014953 305 SRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIR-------------------SRINANVHLKDTMMLGADFYE 364 (415)
Q Consensus 305 ~~~i~~~~~i~~~~i~~~~ig~~~~I~-~~~i~~svig~~-------------------~~ig~~~~i~~sii~~~~~~~ 364 (415)
++.+++++.+.++.+.+|+||++|+|+ ++.|.+++++.+ +.||++|+|.+++|+++++|+
T Consensus 14 ~s~Ig~g~~I~~~~i~~s~IG~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~i~~~v~Ig~~~~I~~~iIg~~~~IG 93 (135)
T d1yp2a1 14 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIG 93 (135)
T ss_dssp EEEECTTCEEEEEEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEESEEECTTCEEC
T ss_pred eCEECCCCEEeCCEEeccccCCcEEECCCCEEEcCEEECCCEEeCCcEEEecceEcCCCCEECcceEeccceecCCCEEC
Confidence 466788888866677889999999999 799988887755 789999999999999998888
Q ss_pred chhHHHh--hhhCCCcceEeCCCCEEe-e-eEECCCeEEcCCcc
Q 014953 365 TDAEVAS--LLAEGRVPVGIGENTKIK-Y-EQLKPICHIVETKY 404 (415)
Q Consensus 365 ~~~~~~~--~~~~~~~~~~Ig~~~~i~-~-~~i~~~~~i~~~~~ 404 (415)
+++.+.. .+.+. +.+++++.+. + ++|++++.|++|+.
T Consensus 94 ~g~~i~~~~~~~~~---~~~~~~~~i~~g~vvIg~~~~I~~g~v 134 (135)
T d1yp2a1 94 DNVKIINKDNVQEA---ARETDGYFIKSGIVTVIKDALIPSGII 134 (135)
T ss_dssp TTCEECCSSCCSCE---EEGGGTEEEETTEEEECTTCEECTTCB
T ss_pred CCcEECCCcccccc---eeeCCCEEECCCeEEECCCCEECcCcC
Confidence 7776643 23333 5566666665 3 77999999999875
|
| >d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.08 E-value=5.5e-11 Score=84.96 Aligned_cols=59 Identities=19% Similarity=0.217 Sum_probs=50.4
Q ss_pred ccccCccCCCeee-cCCccc-cceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCC
Q 014953 302 IYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGA 360 (415)
Q Consensus 302 ~~~~~~i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~ 360 (415)
+...+.+++++.| +++.++ ++.||+||+|+ +|.|++|.||++|+|++++.|.+|+|+++
T Consensus 11 I~g~v~IG~~~~I~~~~~i~g~~~IG~~v~Ig~~~~i~~~~Ig~~~~I~~~s~i~~~~Ig~~ 72 (78)
T d1fxja1 11 LRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAA 72 (78)
T ss_dssp EEEEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECTTCEEESEEECTT
T ss_pred EeccEEECCCCEECCccEEeCCcEECCCCEECCCeEEecCEECCCCEEcCCcEEECCEECCC
Confidence 4445666677777 666665 78999999999 79999999999999999999999999999
|
| >d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Helicobacter pylori [TaxId: 210]
Probab=99.06 E-value=1.3e-10 Score=103.69 Aligned_cols=116 Identities=16% Similarity=0.155 Sum_probs=69.1
Q ss_pred cCCCCCccccCccCCCeee-cCCccc-cceECCCCEEc-ceEEe-eeEEccCcEECCCcEEee-----------------
Q 014953 296 YDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKD----------------- 354 (415)
Q Consensus 296 ~~~~~~~~~~~~i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i~-~svig~~~~ig~~~~i~~----------------- 354 (415)
++|++.+.+++.|++++.| ++|.|. ++.||++|+|+ ++.|. +|.||++|.|.+++.|..
T Consensus 3 Ih~sAiI~~~a~Ig~~V~IG~~~vIg~~v~Ig~~~~I~~~v~I~~~t~IG~~~~i~~~~~Ig~~~~~~~~~~~~~~~~ig 82 (259)
T d1j2za_ 3 IAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIG 82 (259)
T ss_dssp BCTTCEECTTSEECTTCEECTTCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEESCCCSCSSCCSCCCEEEEC
T ss_pred CCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCEEEeCCCEEeeecccCCccEECCCCcccccccccceEEec
Confidence 4556666666666666666 555553 56666666666 45553 677777777776666621
Q ss_pred ---------------------cEEeCCccccch------hHH--------------HhhhhCCCcceEeCCCCEEe-eeE
Q 014953 355 ---------------------TMMLGADFYETD------AEV--------------ASLLAEGRVPVGIGENTKIK-YEQ 392 (415)
Q Consensus 355 ---------------------sii~~~~~~~~~------~~~--------------~~~~~~~~~~~~Ig~~~~i~-~~~ 392 (415)
+.+++++.+..+ +.+ .+.++++ |.||.++.|. ++.
T Consensus 83 ~~~~i~~~~~i~~~~~~~~~~t~iG~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~g~v~Ig~~---v~IG~~s~I~~gv~ 159 (259)
T d1j2za_ 83 EDNLIREFCMINPGTEGGIKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDY---VNIGGLTAIHQFVR 159 (259)
T ss_dssp SSCEECTTCEECCCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSS---CEECTTCEECTTCE
T ss_pred cccccccccccccccccccccccccCceEEeccccccceecccceeeeecccccccccccccc---ceecceeeeecccE
Confidence 112222111111 111 0233444 6666666676 788
Q ss_pred ECCCeEEcCCcccCcccccccc
Q 014953 393 LKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 393 i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
||+++.|++++.+.+-+-+|++
T Consensus 160 IG~~a~IgagSvV~kdVp~~~i 181 (259)
T d1j2za_ 160 IAKGCMIAGKSALGKDVPPYCT 181 (259)
T ss_dssp ECTTCEECTTCEECSBBCTTEE
T ss_pred eccceeeeeeeeecccccccee
Confidence 8888888888888888888775
|
| >d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: UDP-glucose pyrophosphorylase 2 (UDPGP 2) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.05 E-value=4.4e-09 Score=97.78 Aligned_cols=255 Identities=12% Similarity=0.128 Sum_probs=152.8
Q ss_pred ccceEEEEEcCCCCCcccccccCCcccceeeC-Ccceeehhehhhhhc----cCCc-EEEEEcccC-hhHHHHHHHhhcc
Q 014953 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIG-GAYRLIDVPMSNCIN----SGIN-KVYILTQYN-SASLNRHLARAYN 78 (415)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~llpv~-g~~pli~~~l~~l~~----~gi~-~I~vv~~~~-~~~i~~~l~~~~~ 78 (415)
..++-+|+||||.||||+ .+.||+|+||+ |+ ++++..++++.. .|.. .++|-+++. ++...+++.+...
T Consensus 72 l~kvavv~LaGG~GTRLG---~~~pK~~~~v~~~~-t~ldl~~~~i~~l~~~~~~~iP~~iMtS~~T~~~t~~~l~~~~~ 147 (378)
T d2icya2 72 LDKLVVLKLNGGLGTTMG---CTGPKSVIEVRDGL-TFLDLIVIQIENLNNKYGCKVPLVLMNSFNTHDDTHKIVEKYTN 147 (378)
T ss_dssp HTTEEEEEEECCBSGGGT---CCSBGGGSEEETTE-EHHHHHHHHHHHHHHHHSCCCCEEEEECTTTHHHHHHHHGGGTT
T ss_pred hCCEEEEEecCCcccccC---CCCCceeeEeCCCC-CHHHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHhcc
Confidence 367899999999999996 78999999997 56 999999999874 3432 566777654 5788888876543
Q ss_pred CCCCccc-CCceEE--------EecCccCCCCCCCcc-ccchHHHHHHh-----hhhhcCCCCCCcCeEEEEcCCeeccc
Q 014953 79 YGSGVTF-GDGCVE--------VLAATQTPGEAGKRW-FQGTADAVRQF-----HWLFEDPRNKVIEDVLILSGDHLYRM 143 (415)
Q Consensus 79 ~~~~~~~-~~~~v~--------i~~~~~~~~~~~~~~-~~Gt~~al~~~-----~~~i~~~~~~~~~~~lv~~gD~i~~~ 143 (415)
++....+ ....+. .+..... .....| +.|.|+..... ++.+.. .+.+.+.+.+.|.+...
T Consensus 148 fg~~i~~f~Q~~~P~~~~~~~~~~~~~~~--~~~~~~~P~GhGdi~~aL~~sG~Ld~l~~---~Gieyi~v~~vDNl~a~ 222 (378)
T d2icya2 148 SNVDIHTFNQSKYPRVVADEFVPWPSKGK--TDKEGWYPPGHGDVFPALMNSGKLDTFLS---QGKEYVFVANSDNLGAI 222 (378)
T ss_dssp SSSCEEEEECCCEECEETTTTEEGGGGTC--CSGGGEECCCGGGHHHHHHHHSHHHHHHT---TTCCEEEEEETTBTTCC
T ss_pred CCCceEEEEecccccccCCcccccccccC--CCcceeecCCChhhhHHHHhcChHHHHHh---cCCEEEEEEccCCcccc
Confidence 3321110 000000 1100000 000112 45777766543 223322 34689999999997765
Q ss_pred ChHHHHHHHHHcCCcEEEEEEEcCCCcCCcccEEE-ECCCCCeEEEEEcCCcccccccccccccccccccccccccceee
Q 014953 144 DYMDFVQNHRQSGADITISCLPMDDSRASDFGLMK-INNEGRVLSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIAS 222 (415)
Q Consensus 144 ~l~~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~-~d~~~~v~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 222 (415)
.-..++.+|.++++++++-+.+...+. +.-|.+. .|..-+++.+.+.|....... ....+..+.+
T Consensus 223 ~Dp~~lG~~~~~~~~~~~kvv~Kt~~d-ek~G~l~~~dg~~~vvEyse~p~e~~~~~-------------~~~~~~~~~N 288 (378)
T d2icya2 223 VDLTILKHLIQNKNEYCMEVTPKTLAD-VKGGTLISYEGKVQLLEIAQVPDEHVNEF-------------KSIEKFKIFN 288 (378)
T ss_dssp CCHHHHHHHHHHTCSEEEEEEECCTTC-CSSCEEEEETTEEEEECGGGSCGGGHHHH-------------HSSSSCCEEE
T ss_pred cchHHHHHHHhcCCcceeEEEecCCCC-CceeEEEEECCceeeeehhcCChhHHhhh-------------cCCcCcceee
Confidence 456789999999999999888765532 2334444 333334555655554321100 0001124578
Q ss_pred eeEEEEeHHHHHHHHhhhCCC-----------------CCcccccchhhhcccceEEEEEeC-ceEEecCCHHHHHHHHH
Q 014953 223 MGVYLFKKEILLNLLRWRFPT-----------------ANDFGSEIIPASANEQFLKAYLFN-DYWEDIGTIRSFFEANL 284 (415)
Q Consensus 223 ~Giyi~~~~~l~~~l~~~~~~-----------------~~~~~~~~l~~l~~~~~i~~~~~~-g~~~di~t~~~y~~an~ 284 (415)
++.++++-++++++++..... .+.|..|+++.. .+..++.++ ..|..+.++.|++.+..
T Consensus 289 ~nn~~~~l~~l~~~~~~~~~~l~~~~~~K~~~~~~~iqlE~~i~d~~~~~---~~~~~~eV~R~rF~PvKn~sDll~~~s 365 (378)
T d2icya2 289 TNNLWVNLKAIKKLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRFF---DNAIGVNVPRSRFLPVKASSDLLLVQS 365 (378)
T ss_dssp EEEEEEEHHHHHHHHHTTCCCCCCBCCEEEETTEEEECCBCCGGGGGGGS---TTCEEEECCGGGCCBCCSHHHHHHHHS
T ss_pred eeeeeeeHHHHHHHHhhccCCCceEecCcCCCCCCeeehhhHHHHHHHhC---CCcEEEEecccccCCCCChHHHHHHhh
Confidence 999999999998887643111 122233333321 234444443 34888899999887765
Q ss_pred hh
Q 014953 285 AL 286 (415)
Q Consensus 285 ~~ 286 (415)
++
T Consensus 366 d~ 367 (378)
T d2icya2 366 DL 367 (378)
T ss_dssp TT
T ss_pred ce
Confidence 43
|
| >d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.03 E-value=1.8e-10 Score=98.28 Aligned_cols=35 Identities=14% Similarity=0.066 Sum_probs=28.9
Q ss_pred eEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 380 VGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 380 ~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
|.||.++.|. ++.||+++.|++++.+.+.+-++++
T Consensus 149 ~~iG~~~~I~~gv~IG~~s~IgagsvVtkdvp~~~i 184 (196)
T d1g97a1 149 VFVGSNSTIIAPVELGDNSLVGAGSTITKDVPADAI 184 (196)
T ss_dssp CEECTTCEEESSCEECTTCEECTTCEECSCBCTTCE
T ss_pred CEEeeeeEEcCCcEECCCCEECCCCEECcCcCCCCE
Confidence 5666666665 7889999999999999999988875
|
| >d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: gamma-carbonic anhydrase species: Archaeon Methanosarcina thermophila [TaxId: 2210]
Probab=99.01 E-value=2.9e-10 Score=98.06 Aligned_cols=47 Identities=9% Similarity=0.064 Sum_probs=22.3
Q ss_pred cEEeCCccccchhHHH--hhhhCCCcceEeCCCCEEeeeEECCCeEEcCCcc
Q 014953 355 TMMLGADFYETDAEVA--SLLAEGRVPVGIGENTKIKYEQLKPICHIVETKY 404 (415)
Q Consensus 355 sii~~~~~~~~~~~~~--~~~~~~~~~~~Ig~~~~i~~~~i~~~~~i~~~~~ 404 (415)
+.|++++.|+.++.+. +.++++ |.||.|+.|.++.||+++.|++++.
T Consensus 104 ~~IG~~v~IG~~~~i~g~~~IGd~---~~IG~gs~i~~~~IG~~~vIg~~sv 152 (210)
T d1qrea_ 104 VYIGNNVSLAHQSQVHGPAAVGDD---TFIGMQAFVFKSKVGNNCVLEPRSA 152 (210)
T ss_dssp EEECTTCEECTTCEEEEEEEECTT---CEECTTCEEEEEEECTTCEECTTCE
T ss_pred eeeccccccccccccccCCcccCC---cEeeCCccccccccccCcEEecCcE
Confidence 3344444444444331 234444 5555555555555555555555443
|
| >d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: gamma-carbonic anhydrase species: Archaeon Methanosarcina thermophila [TaxId: 2210]
Probab=98.94 E-value=8.5e-10 Score=95.03 Aligned_cols=107 Identities=8% Similarity=-0.016 Sum_probs=71.2
Q ss_pred CCCCCccccCccCCCeee-cCCccc-----cceECCCCEEc-ceEE------------------------eeeEEccCcE
Q 014953 297 DATKPIYTSRRNLPPSKI-DDSKIV-----DSIISHGSFIT-SSFI------------------------EHSVVGIRSR 345 (415)
Q Consensus 297 ~~~~~~~~~~~i~~~~~i-~~~~i~-----~~~ig~~~~I~-~~~i------------------------~~svig~~~~ 345 (415)
+|++.+...+.++++++| +++.|+ ...||++|.|+ ++.| .++.||++|+
T Consensus 32 ~p~A~i~g~V~IG~~~~Igp~~vIrgd~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~IG~~v~ 111 (210)
T d1qrea_ 32 DPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVS 111 (210)
T ss_dssp CTTCEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEEESEEECTTCE
T ss_pred CCCCEEecceEECCCCEEccCeeeecccCCceEEcccceeeeeeEeccceeeccccccccCccccccccccceeeccccc
Confidence 333333333345555555 455552 35566666666 4555 2478888888
Q ss_pred ECCCcEEe-ecEEeCCccccchhHHH-hhhhCCCcceEeCCCCEEeeeEECCCeEEcCCcccC
Q 014953 346 INANVHLK-DTMMLGADFYETDAEVA-SLLAEGRVPVGIGENTKIKYEQLKPICHIVETKYDS 406 (415)
Q Consensus 346 ig~~~~i~-~sii~~~~~~~~~~~~~-~~~~~~~~~~~Ig~~~~i~~~~i~~~~~i~~~~~~~ 406 (415)
||+++.|. ++.|++++.|+.++.+. +.++++ |.||.++.+.+++|.+++.|++++..-
T Consensus 112 IG~~~~i~g~~~IGd~~~IG~gs~i~~~~IG~~---~vIg~~svv~g~~i~~g~~I~~g~~v~ 171 (210)
T d1qrea_ 112 LAHQSQVHGPAAVGDDTFIGMQAFVFKSKVGNN---CVLEPRSAAIGVTIPDGRYIPAGMVVT 171 (210)
T ss_dssp ECTTCEEEEEEEECTTCEECTTCEEEEEEECTT---CEECTTCEEESCEECTTBEECTTCEEC
T ss_pred cccccccccCCcccCCcEeeCCccccccccccC---cEEecCcEecCcEeCCCcEECCCcEEe
Confidence 88888886 47888888888887554 356666 777777777788888888888877543
|
| >d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Escherichia coli, gene lpxA [TaxId: 562]
Probab=98.92 E-value=9.4e-10 Score=98.08 Aligned_cols=35 Identities=9% Similarity=0.099 Sum_probs=24.0
Q ss_pred eEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 380 VGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 380 ~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
|.||.++.+. ++.||+++.|++++.+.+.+-++++
T Consensus 151 v~ig~~~~i~~~v~IG~~a~igagS~Vtkdvp~~~~ 186 (262)
T d2jf2a1 151 AIIGGMTAVHQFCIIGAHVMVGGCSGVAQDVPPYVI 186 (262)
T ss_dssp CEECTTCEECTTCEECTTCEECSSCEECSBBCTTEE
T ss_pred EEeccCceeccccEeehhceeeccceEeecCCcccc
Confidence 4455555554 5777777777888888887777764
|
| >d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Galactoside acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=98.90 E-value=2.1e-09 Score=91.36 Aligned_cols=108 Identities=15% Similarity=0.066 Sum_probs=74.1
Q ss_pred CccccCccCCCeee-cCCccccceECCCCEEc-ceEE---eeeEEccCcEECCCcEEeecEEe-CCccccchhHHH--hh
Q 014953 301 PIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFI---EHSVVGIRSRINANVHLKDTMML-GADFYETDAEVA--SL 372 (415)
Q Consensus 301 ~~~~~~~i~~~~~i-~~~~i~~~~ig~~~~I~-~~~i---~~svig~~~~ig~~~~i~~sii~-~~~~~~~~~~~~--~~ 372 (415)
.+.+++.|.|++++ .+ .++.||++|.|+ +++| ....||++|.||+++.|...... +......+.... ..
T Consensus 56 ~iG~~~~I~p~~~i~~G---~nv~IG~~~~I~~~~~I~~~~~i~IG~~v~Ig~~v~I~~~~~~~~~~~~~~~~~~~~~v~ 132 (200)
T d1krra_ 56 TVGENAWVEPPVYFSYG---SNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPIT 132 (200)
T ss_dssp BCCSSCEECSCEEESCS---TTEEECSSCEECSCEEEECSSCEEECSSCEECSSCEEESEECCSSTTTCTTCCBEECCEE
T ss_pred cCCCCCEEcCCEEEecC---CccEECCccEECceEEEecCCCcEeCCCccccceeEEecccccceecccccceeecceEE
Confidence 34556777777777 22 245677777776 5666 34689999999999999764332 222222222211 24
Q ss_pred hhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 373 LAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 373 ~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
++++ |.||.||.|. ++.||+++.|++++.+.+.+.++|+
T Consensus 133 Igd~---v~IG~~~~I~~Gv~IG~~~vIgagSvV~kdvp~~~i 172 (200)
T d1krra_ 133 IGNN---VWIGSHVVINPGVTIGDNSVIGAGSIVTKDIPPNVV 172 (200)
T ss_dssp ECTT---CEECTTCEECTTCEECTTCEECTTCEECSCBCTTEE
T ss_pred EccC---cccceeeecccccccCCCcEEeCCCEEeeEcCCCcE
Confidence 5565 8888888887 8999999999999999998888775
|
| >d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Escherichia coli, gene lpxA [TaxId: 562]
Probab=98.82 E-value=2.4e-09 Score=95.32 Aligned_cols=55 Identities=15% Similarity=0.156 Sum_probs=25.5
Q ss_pred ccCCCCCccccCccCCCeee-cCCccc-cceECCCCEEc-ceEEe-eeEEccCcEECCC
Q 014953 295 FYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIE-HSVVGIRSRINAN 349 (415)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i~-~svig~~~~ig~~ 349 (415)
+++|++.+.+++.|++++.| ++|.|. ++.||++|+|+ +++|. ++.+++++.+.++
T Consensus 7 ~I~p~a~I~~~~~Ig~~v~Ig~~~~I~~~v~Ig~~~~I~~~~~I~~~~~ig~~~~i~~~ 65 (262)
T d2jf2a1 7 FVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQF 65 (262)
T ss_dssp EECTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSEEEECSSCEECTT
T ss_pred EECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEeCCEEEcCCccccccceeeee
Confidence 34444444444445445544 444442 45555555555 34442 3444444444333
|
| >d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD species: Mycobacterium bovis [TaxId: 1765]
Probab=98.74 E-value=1.1e-08 Score=88.50 Aligned_cols=99 Identities=9% Similarity=0.129 Sum_probs=55.5
Q ss_pred CCCccccCccCCCeeecCCcc-ccceECCCCEEc-ceEEe-eeEEccCcEECCCcEEeecEEeCCccccchhHHHhhhhC
Q 014953 299 TKPIYTSRRNLPPSKIDDSKI-VDSIISHGSFIT-SSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAE 375 (415)
Q Consensus 299 ~~~~~~~~~i~~~~~i~~~~i-~~~~ig~~~~I~-~~~i~-~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~~~~~~~ 375 (415)
.+.+..++.+.+++.+..+.+ ..++||++|.|. .++|. .+.||++|+|+.|+.|.+.. ++-...-+++++
T Consensus 108 ga~VR~GayI~~~vVlmps~VNigA~ig~~~midt~a~vgs~aqIG~~vhis~g~~igGvl-------ep~~~~p~iIed 180 (274)
T d3tdta_ 108 PATVRQGAFIARNTVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVL-------EPLQANPTIIED 180 (274)
T ss_dssp TCEEBTTCEECTTCEECSEEECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCSB-------TTBCSSCCEECT
T ss_pred CceeccCcEECCCcEEeeeEeccccEEcCCcEEcccceecceeEECCCeEECCCcEEEecc-------ccCCCCCcEEec
Confidence 344444444555444332322 367778888887 56664 35666677766666666533 111111223333
Q ss_pred CCcceEeCCCCEEe-eeEECCCeEEcCCcccCc
Q 014953 376 GRVPVGIGENTKIK-YEQLKPICHIVETKYDSS 407 (415)
Q Consensus 376 ~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~ 407 (415)
+ |.||.+|.+- +++|++++.|++|+...+
T Consensus 181 ~---~~IGa~s~v~egv~Vg~~avi~~gv~i~~ 210 (274)
T d3tdta_ 181 N---CFIGARSEVVEGVIVEEGSVISMGVYLGQ 210 (274)
T ss_dssp T---CEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred C---cEeccCceEecCEEecCceEeccceEEec
Confidence 3 7777777765 777777777777766554
|
| >d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Putative acetyltransferase/acyltransferase BC4754 species: Bacillus cereus [TaxId: 1396]
Probab=98.72 E-value=1.9e-08 Score=83.60 Aligned_cols=91 Identities=15% Similarity=0.146 Sum_probs=53.1
Q ss_pred cceECCCCEEc-ceEEe----eeEEccCcEECCCcEEeec-----EEeCCccccchhHHH-hhhhCCCcceEeCCCCEEe
Q 014953 321 DSIISHGSFIT-SSFIE----HSVVGIRSRINANVHLKDT-----MMLGADFYETDAEVA-SLLAEGRVPVGIGENTKIK 389 (415)
Q Consensus 321 ~~~ig~~~~I~-~~~i~----~svig~~~~ig~~~~i~~s-----ii~~~~~~~~~~~~~-~~~~~~~~~~~Ig~~~~i~ 389 (415)
++.||++|.|+ +++|. +..||+++.+++++.+... +++++..+...+.+. +.++++ +.||.++.|.
T Consensus 30 ~v~IG~~~~Ig~~~~I~~~~~~i~IG~~~~i~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~i~~~---~~ig~~~~i~ 106 (172)
T d1xhda_ 30 DVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILHSCHIKKD---ALIGMGSIIL 106 (172)
T ss_dssp EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEEESCEECTT---CEECTTCEEC
T ss_pred CEEECCCcEecCCcccccccccccccceeeeeeeceeccCCcCCeeeeeeeeeeeeecccccccccc---eEEecccEee
Confidence 45555555555 44442 3567777777766666552 333333333333222 233444 7777777776
Q ss_pred -eeEECCCeEEcCCcccC--cccccccc
Q 014953 390 -YEQLKPICHIVETKYDS--STISRFSL 414 (415)
Q Consensus 390 -~~~i~~~~~i~~~~~~~--~~~~~~~~ 414 (415)
++.||+++.|++++.+. +.|.++++
T Consensus 107 ~gv~IG~~~~IgagsvV~~~~~i~~~~v 134 (172)
T d1xhda_ 107 DGAEIGEGAFIGAGSLVSQGKKIPPNTL 134 (172)
T ss_dssp TTCEECTTCEECTTCEECTTCEECTTEE
T ss_pred CCcEEcCcccccceEEEeeCeEECCCeE
Confidence 77888888888888765 45666664
|
| >d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.63 E-value=1.2e-08 Score=86.63 Aligned_cols=65 Identities=12% Similarity=0.229 Sum_probs=33.7
Q ss_pred ccCCCC-CccccCccCCCeee-cCCccc-cceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCC
Q 014953 295 FYDATK-PIYTSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGA 360 (415)
Q Consensus 295 ~~~~~~-~~~~~~~i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~ 360 (415)
+++|++ .+.+.+.++++++| +++.|. ++.||++|+|+ ++.|+++.||++|.|.. ..+.++.+.++
T Consensus 3 ~i~P~s~~I~~~v~Ig~~~~I~~~vvI~~~v~IG~~~~I~~~~~i~~~~IG~~~~I~~-~~i~~~~~g~~ 71 (196)
T d1g97a1 3 FVNPEATYIDIDVEIASEVQIEANVTLKGQTKIGAETVLTNGTYVVDSTIGAGAVITN-SMIEESSVADG 71 (196)
T ss_dssp ESCGGGCEECTTCEECTTCEECTTCEEESSCEECTTCEECTTCEEESCEECTTCEECS-CEEESCEECTT
T ss_pred EeCCCeEEECCCcEECCCCEECCCCEECCCcEECCCceEcCceEeeeeecccCccccc-cceeeccccCc
Confidence 445433 24445555555555 444443 56666666666 45555666666666553 23444444444
|
| >d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.60 E-value=2.4e-08 Score=85.08 Aligned_cols=35 Identities=14% Similarity=0.118 Sum_probs=30.4
Q ss_pred eEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 380 VGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 380 ~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
|.||.++.|. ++.||+++.|++++.+.+.+.++|+
T Consensus 150 v~iG~~~~I~~~v~IG~~s~IgagsvV~kdVp~~si 185 (201)
T d2oi6a1 150 VFVGSDTQLVAPVTVGKGATIAAGTTVTRNVGENAL 185 (201)
T ss_dssp CEECTTCEEESSEEECTTCEECTTCEECSCBCTTCE
T ss_pred EEEeEeeeEcCCcEECCCCEECCCCEEeeecCCCCE
Confidence 6777777776 8999999999999999999999886
|
| >d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Maltose O-acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=98.59 E-value=1.5e-08 Score=84.78 Aligned_cols=91 Identities=11% Similarity=0.113 Sum_probs=59.4
Q ss_pred cceECCCCEEc-ceEEe---eeEEccCcEECCCcEEeecEEe-CCccccchhHHH--hhhhCCCcceEeCCCCEEe-eeE
Q 014953 321 DSIISHGSFIT-SSFIE---HSVVGIRSRINANVHLKDTMML-GADFYETDAEVA--SLLAEGRVPVGIGENTKIK-YEQ 392 (415)
Q Consensus 321 ~~~ig~~~~I~-~~~i~---~svig~~~~ig~~~~i~~sii~-~~~~~~~~~~~~--~~~~~~~~~~~Ig~~~~i~-~~~ 392 (415)
|..||++|.|+ +++|. ...||++|.|++++.|...... +......++.+. ..++++ |.||.||.|. ++.
T Consensus 72 ni~IG~~~~I~~~~~I~d~~~I~IG~~~~Ig~~v~I~~~~~~~~~~~~~~~~~~~~~v~Ig~~---~~iG~~~~I~~Gv~ 148 (182)
T d1ocxa_ 72 NIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNN---VWIGGRAVINPGVT 148 (182)
T ss_dssp TEEECSSEEECSSEEEECSSCEEECTTCEECTTCEEECEECCSSHHHHTTTCBEECCEEECTT---CEECTTCEECTTCE
T ss_pred ceeECCccEECCCcEEecCCeEEECCCeEECcCceEeecccccceeeeeccceEcceeEECce---EeeCceeeccCcEE
Confidence 44455555555 44442 2378888888888887765432 222222222222 245666 7888888887 888
Q ss_pred ECCCeEEcCCcccCcccccccc
Q 014953 393 LKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 393 i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
||+++.|++++.+.+.+-++|+
T Consensus 149 IG~~~vIgagsvV~kdvp~~~i 170 (182)
T d1ocxa_ 149 IGDNVVVASGAVVTKDVPDNVV 170 (182)
T ss_dssp ECTTCEECTTCEECSCBCSSEE
T ss_pred ECCCCEECCCCEEccCCCCCeE
Confidence 9999999999999888887765
|
| >d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Ferripyochelin binding protein species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.57 E-value=6.9e-08 Score=80.13 Aligned_cols=105 Identities=18% Similarity=0.178 Sum_probs=59.9
Q ss_pred ccCCCeee-cCCcc-ccceECCCCEEc-ceEEe----eeEEccCcEECCCcEEeecE-----EeCCccccchhHH-Hhhh
Q 014953 307 RNLPPSKI-DDSKI-VDSIISHGSFIT-SSFIE----HSVVGIRSRINANVHLKDTM-----MLGADFYETDAEV-ASLL 373 (415)
Q Consensus 307 ~i~~~~~i-~~~~i-~~~~ig~~~~I~-~~~i~----~svig~~~~ig~~~~i~~si-----i~~~~~~~~~~~~-~~~~ 373 (415)
.|+++++| +++.| .++.||++|.|+ ++.|. ...+++++.++..+.+..+. +..+......... .+.+
T Consensus 12 ~I~~~~~I~~~a~I~g~v~IG~~~~Ig~~~~I~~~~~~v~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 91 (173)
T d1v3wa_ 12 RIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHGAKV 91 (173)
T ss_dssp EECTTCEECTTSEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEESCEE
T ss_pred EECcCcEECCCCEEeCceEECCCCEECCCccccccccccccccccccccccccccccCCCcccCcceeeeeeeeeeeeec
Confidence 34444444 34443 356667777766 45552 45678888887777765321 1111111111111 1355
Q ss_pred hCCCcceEeCCCCEEe-eeEECCCeEEcCCcccC--cccccccc
Q 014953 374 AEGRVPVGIGENTKIK-YEQLKPICHIVETKYDS--STISRFSL 414 (415)
Q Consensus 374 ~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~--~~~~~~~~ 414 (415)
+++ |.||.+|.|. +++||+++.|++++.+. +.|-+|++
T Consensus 92 g~~---~~ig~~~~i~~gv~Ig~~~vIgagsvV~~~~~i~~~~i 132 (173)
T d1v3wa_ 92 GNY---VIIGISSVILDGAKIGDHVIIGAGAVVPPNKEIPDYSL 132 (173)
T ss_dssp CSS---EEECTTCEECTTCEECSSEEECTTCEECTTCEECTTEE
T ss_pred CCc---ccccceeeecCCEEEcceeEEcCCcEEeCCeEeCCCCE
Confidence 565 7788888776 78888888888887665 45666654
|
| >d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: PglD-like domain: Acetyltransferase PglD species: Campylobacter jejuni [TaxId: 197]
Probab=98.54 E-value=9e-08 Score=80.81 Aligned_cols=16 Identities=6% Similarity=0.194 Sum_probs=6.8
Q ss_pred eEeCCCCEEe-eeEECC
Q 014953 380 VGIGENTKIK-YEQLKP 395 (415)
Q Consensus 380 ~~Ig~~~~i~-~~~i~~ 395 (415)
+.||+||.|. ++++.+
T Consensus 161 v~Ig~~~~IgagsvV~~ 177 (193)
T d3bswa1 161 LSLADDSILGGGATLVK 177 (193)
T ss_dssp CEECTTCEECTTCEECS
T ss_pred eEECCCCEECCCCEECc
Confidence 4444444443 444433
|
| >d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Helicobacter pylori [TaxId: 210]
Probab=98.51 E-value=7.6e-08 Score=85.33 Aligned_cols=58 Identities=12% Similarity=0.060 Sum_probs=27.6
Q ss_pred CccccCccCCCeeecCCccccceECCCCEEc-ceEE-eeeEEccCcEECCCcEEee-cEEeCCcc
Q 014953 301 PIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFI-EHSVVGIRSRINANVHLKD-TMMLGADF 362 (415)
Q Consensus 301 ~~~~~~~i~~~~~i~~~~i~~~~ig~~~~I~-~~~i-~~svig~~~~ig~~~~i~~-sii~~~~~ 362 (415)
.+.+++.|.|.+.|. .++.||++|+|+ +++| ++|.|+++|+|+.+++|.+ +.+.++++
T Consensus 2 ~Ih~sAiI~~~a~Ig----~~V~IG~~~vIg~~v~Ig~~~~I~~~v~I~~~t~IG~~~~i~~~~~ 62 (259)
T d1j2za_ 2 KIAKTAIISPKAEIN----KGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAV 62 (259)
T ss_dssp CBCTTCEECTTSEEC----TTCEECTTCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCE
T ss_pred cCCCCCEECCCCEEC----CCCEECCCCEECCCCEECCCCEECCCEEEeCCCEEeeecccCCccE
Confidence 355555666666551 245555555555 3333 2444444444444444432 33333333
|
| >d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD species: Mycobacterium bovis [TaxId: 1765]
Probab=98.43 E-value=1.7e-07 Score=80.99 Aligned_cols=85 Identities=11% Similarity=0.083 Sum_probs=60.2
Q ss_pred cceECCCCEEcceEE-eeeEEccCcEECCCcEEee-cEEeCCccccchhHHHhhhh-CCCcceEeCCCCEEe-eeEECCC
Q 014953 321 DSIISHGSFITSSFI-EHSVVGIRSRINANVHLKD-TMMLGADFYETDAEVASLLA-EGRVPVGIGENTKIK-YEQLKPI 396 (415)
Q Consensus 321 ~~~ig~~~~I~~~~i-~~svig~~~~ig~~~~i~~-sii~~~~~~~~~~~~~~~~~-~~~~~~~Ig~~~~i~-~~~i~~~ 396 (415)
.++|++|+++-.+.| ..+.||++|.|..++.|+. |.|++++||..|+.+...++ -++.|+.|+++|.|. +|.|-++
T Consensus 114 GayI~~~vVlmps~VNigA~ig~~~midt~a~vgs~aqIG~~vhis~g~~igGvlep~~~~p~iIed~~~IGa~s~v~eg 193 (274)
T d3tdta_ 114 GAFIARNTVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARSEVVEG 193 (274)
T ss_dssp TCEECTTCEECSEEECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCSBTTBCSSCCEECTTCEECTTCEECTT
T ss_pred CcEECCCcEEeeeEeccccEEcCCcEEcccceecceeEECCCeEECCCcEEEeccccCCCCCcEEecCcEeccCceEecC
Confidence 567777776666655 3677777777777777775 47777777777777766553 333367788888887 8888888
Q ss_pred eEEcCCccc
Q 014953 397 CHIVETKYD 405 (415)
Q Consensus 397 ~~i~~~~~~ 405 (415)
+.|+.++..
T Consensus 194 v~Vg~~avi 202 (274)
T d3tdta_ 194 VIVEEGSVI 202 (274)
T ss_dssp CEECTTCEE
T ss_pred EEecCceEe
Confidence 888877754
|
| >d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Enterococcus faecium, VAT(D) [TaxId: 1352]
Probab=98.40 E-value=9.2e-08 Score=81.46 Aligned_cols=75 Identities=13% Similarity=0.159 Sum_probs=47.8
Q ss_pred eeEEccCcEECCCcEEee---cEEeCCccccchhH---------------H--HhhhhCCCcceEeCCCCEEe-eeEECC
Q 014953 337 HSVVGIRSRINANVHLKD---TMMLGADFYETDAE---------------V--ASLLAEGRVPVGIGENTKIK-YEQLKP 395 (415)
Q Consensus 337 ~svig~~~~ig~~~~i~~---sii~~~~~~~~~~~---------------~--~~~~~~~~~~~~Ig~~~~i~-~~~i~~ 395 (415)
++.||++|.|++++.|.. ..+.+++.+..... + .+.++++ |.||.+|.|. ++.||+
T Consensus 60 ~v~IG~~~~Ig~gv~I~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~g~v~IGd~---v~IG~~~~I~~gv~IG~ 136 (203)
T d1mr7a_ 60 KLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGND---VWIGKDVVIMPGVKIGD 136 (203)
T ss_dssp CEEECSSCEECTTCEEECGGGCCCCSSCCCCGGGGCTTGGGGCCCGGGSCCCCCEEECSS---CEECTTCEECTTCEECT
T ss_pred ccEECCCeEECCCCcEeeecCcEeccCceEeeeeecccccCcccccccccCccCeEECCE---EEECCceeEEeEEEEcC
Confidence 467888888888887631 22333322211100 0 1234555 7777777776 788888
Q ss_pred CeEEcCCcccCcccccccc
Q 014953 396 ICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 396 ~~~i~~~~~~~~~~~~~~~ 414 (415)
++.|++++.+.+.+-++++
T Consensus 137 ~~~IgagSvV~kdv~~~~i 155 (203)
T d1mr7a_ 137 GAIVAANSVVVKDIAPYML 155 (203)
T ss_dssp TCEECTTCEECSCBCTTEE
T ss_pred CCEEecCeEEeeeCCCCEE
Confidence 9999999998888877765
|
| >d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Putative acetyltransferase/acyltransferase BC4754 species: Bacillus cereus [TaxId: 1396]
Probab=98.40 E-value=3.1e-07 Score=75.98 Aligned_cols=104 Identities=14% Similarity=0.081 Sum_probs=67.1
Q ss_pred ccCCCCCccccCccCCCeee-cCCccc----cceECCCCEEc-ceEEee-----eEEccCcEECCCcEEeecEEeCCccc
Q 014953 295 FYDATKPIYTSRRNLPPSKI-DDSKIV----DSIISHGSFIT-SSFIEH-----SVVGIRSRINANVHLKDTMMLGADFY 363 (415)
Q Consensus 295 ~~~~~~~~~~~~~i~~~~~i-~~~~i~----~~~ig~~~~I~-~~~i~~-----svig~~~~ig~~~~i~~sii~~~~~~ 363 (415)
++++.+.+..++.|+.+|.| +++.|. ...||++|.++ ++.+.. ++|++++.++..+.+.++.+.+++.+
T Consensus 20 ~I~~~a~I~~~v~IG~~~~Ig~~~~I~~~~~~i~IG~~~~i~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~i~~~~~i 99 (172)
T d1xhda_ 20 FIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILHSCHIKKDALI 99 (172)
T ss_dssp EECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEEESCEECTTCEE
T ss_pred EECCCCEEeCCEEECCCcEecCCcccccccccccccceeeeeeeceeccCCcCCeeeeeeeeeeeeecccccccccceEE
Confidence 34455555555555566666 555553 35778888877 455533 68888888888888888888888877
Q ss_pred cchhHHHhhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCccc
Q 014953 364 ETDAEVASLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYD 405 (415)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~ 405 (415)
+.++.+.. + ++||++|.|. +|+|.++..|++++..
T Consensus 100 g~~~~i~~----g---v~IG~~~~IgagsvV~~~~~i~~~~v~ 135 (172)
T d1xhda_ 100 GMGSIILD----G---AEIGEGAFIGAGSLVSQGKKIPPNTLA 135 (172)
T ss_dssp CTTCEECT----T---CEECTTCEECTTCEECTTCEECTTEEE
T ss_pred ecccEeeC----C---cEEcCcccccceEEEeeCeEECCCeEE
Confidence 77654432 2 5566666665 6666666666666543
|
| >d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Galactoside acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=98.25 E-value=5.4e-07 Score=76.14 Aligned_cols=25 Identities=12% Similarity=-0.081 Sum_probs=11.5
Q ss_pred ccCCCeee-cCCcc---ccceECCCCEEc
Q 014953 307 RNLPPSKI-DDSKI---VDSIISHGSFIT 331 (415)
Q Consensus 307 ~i~~~~~i-~~~~i---~~~~ig~~~~I~ 331 (415)
.|+.+++| .++.| ..+.||++|.|+
T Consensus 76 ~IG~~~~I~~~~~I~~~~~i~IG~~v~Ig 104 (200)
T d1krra_ 76 HIGRNFYANFNLTIVDDYTVTIGDNVLIA 104 (200)
T ss_dssp EECSSCEECSCEEEECSSCEEECSSCEEC
T ss_pred EECCccEECceEEEecCCCcEeCCCcccc
Confidence 34444444 34444 134455555555
|
| >d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.25 E-value=8.7e-07 Score=75.40 Aligned_cols=40 Identities=13% Similarity=0.137 Sum_probs=32.8
Q ss_pred hhhCCCcceEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 372 LLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 372 ~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
.++++ |.||.||.|. ++.||+++.|++++.+.+.+.++|+
T Consensus 110 ~Igd~---v~IG~~s~I~~gv~IG~~~vIgagSvVtkdvp~~si 150 (208)
T d1xata_ 110 LIGHE---VWIGTEAMFMPGVRVGHGAIIGSRALVTGDVEPYAI 150 (208)
T ss_dssp EECTT---CEECTTCEECTTCEECTTCEECTTCEECSCBCTTEE
T ss_pred EEcCC---eEECccccccCCeEeCCCCEEeCceEEeecCCcCcE
Confidence 44555 7788888887 8999999999999999998888875
|
| >d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase {Human (Homo sapiens), AGX1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: UDP-N-acetylglucosamine pyrophosphorylase species: Human (Homo sapiens), AGX1 [TaxId: 9606]
Probab=98.24 E-value=5e-06 Score=79.38 Aligned_cols=216 Identities=17% Similarity=0.211 Sum_probs=122.8
Q ss_pred cceEEEEEcCCCCCcccccccCCcccceee---CCcceeehhehhhhhcc----------CC-cEEEEEcccC-hhHHHH
Q 014953 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPI---GGAYRLIDVPMSNCINS----------GI-NKVYILTQYN-SASLNR 71 (415)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~llpv---~g~~pli~~~l~~l~~~----------gi-~~I~vv~~~~-~~~i~~ 71 (415)
.++-+|+||||.||||+ ...||.++|| .++ ++++..++++.+. +. -.++|.++.. ++...+
T Consensus 101 gkvavvllaGG~GTRLG---~~~pK~~~~v~~~~~k-sllql~~e~i~~l~~~a~~~~~~~~~iPl~IMtS~~T~~~t~~ 176 (501)
T d1jv1a_ 101 NKVAVLLLAGGQGTRLG---VAYPKGMYDVGLPSRK-TLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKE 176 (501)
T ss_dssp TCEEEEEECCCCCCTTS---CSSCGGGCCCCCTTCC-CHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECTTTHHHHHH
T ss_pred CCEEEEEECCCccccCC---CCCCceeeeeccCCCC-cHHHHHHHHHHHHHHHHHHhcCCCCCceEEEECChhHhHHHHH
Confidence 57889999999999997 7899999998 567 8999988877642 22 2456666654 578889
Q ss_pred HHHhhccCCCCcc----cCCceEEEecCccCC--CCCC--CccccchHHHHHHhhh--hhcCCCCCCcCeEEEEcCCeec
Q 014953 72 HLARAYNYGSGVT----FGDGCVEVLAATQTP--GEAG--KRWFQGTADAVRQFHW--LFEDPRNKVIEDVLILSGDHLY 141 (415)
Q Consensus 72 ~l~~~~~~~~~~~----~~~~~v~i~~~~~~~--~~~~--~~~~~Gt~~al~~~~~--~i~~~~~~~~~~~lv~~gD~i~ 141 (415)
++.+..-|+-... |....+..+...... ...+ .-.|.|.|+....... .+++....+.+.+.+.+.|.+.
T Consensus 177 ~l~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~i~~~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l 256 (501)
T d1jv1a_ 177 FFTKHKYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNIL 256 (501)
T ss_dssp HHHHTGGGGSCGGGEEEEECCEEECEETTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEETTBTT
T ss_pred HHHhccccCCCcCceEEEEecCcceECCCCCcccCCCCcccccCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecCCcc
Confidence 9886532332110 111111111100000 0000 0123466554433321 1221111236899999999954
Q ss_pred -ccChHHHHHHHHHcCCcEEEEEEEcCCCcCCcccEEEECCCCCe--EEEEEcCCccccccccccccccccccccccccc
Q 014953 142 -RMDYMDFVQNHRQSGADITISCLPMDDSRASDFGLMKINNEGRV--LSFSEKPKGKDLKAMAVDTTVLGLSKQEAEEKP 218 (415)
Q Consensus 142 -~~~l~~~l~~h~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~~~v--~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (415)
..---.++..+..+++++.+-+.+...+ .+.-|++.. .+|+. +.+.+-|..... . .........
T Consensus 257 ~~~~Dp~~lG~~~~~~~~~~~kvv~k~~~-~e~~G~l~~-~dg~~~vvEysel~~~~~~---~--------~~~~g~l~f 323 (501)
T d1jv1a_ 257 VKVADPRFIGFCIQKGADCGAKVVEKTNP-TEPVGVVCR-VDGVYQVVEYSEISLATAQ---K--------RSSDGRLLF 323 (501)
T ss_dssp CCTTCHHHHHHHHHTTCSEEEEEEECCST-TCSCCEEEE-ETTEEEEECGGGSCHHHHH---C--------BCTTSSBSS
T ss_pred ccccCHHHHHHHHhcccceeEEEEEcCCC-CcccceEEE-ECCeEEEEEeccCCHHHHh---h--------ccCCCcccc
Confidence 3323568888999999999988876542 234566554 24543 333333221110 0 001111123
Q ss_pred ceeeeeEEEEeHHHHHHHHhh
Q 014953 219 YIASMGVYLFKKEILLNLLRW 239 (415)
Q Consensus 219 ~l~~~Giyi~~~~~l~~~l~~ 239 (415)
...+++.++|+-++++++++.
T Consensus 324 ~~~Ni~~~~fsl~fl~~~~~~ 344 (501)
T d1jv1a_ 324 NAGNIANHFFTVPFLRDVVNV 344 (501)
T ss_dssp CEEEEEEEEEEHHHHHHHHHT
T ss_pred cccceeheeeEHHHHHHHHHh
Confidence 467889999999999988753
|
| >d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Ferripyochelin binding protein species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.11 E-value=2.3e-06 Score=70.60 Aligned_cols=102 Identities=12% Similarity=0.088 Sum_probs=45.4
Q ss_pred CCCCCccccCccCCCeee-cCCccc----cceECCCCEEc-ceEEe-----eeEEccCcEECCCcEEeecEEeCCccccc
Q 014953 297 DATKPIYTSRRNLPPSKI-DDSKIV----DSIISHGSFIT-SSFIE-----HSVVGIRSRINANVHLKDTMMLGADFYET 365 (415)
Q Consensus 297 ~~~~~~~~~~~i~~~~~i-~~~~i~----~~~ig~~~~I~-~~~i~-----~svig~~~~ig~~~~i~~sii~~~~~~~~ 365 (415)
++.+.+...+.|++++.| +++.|. +..|+++|.+. .+.+. .+.++.++.+........+.|++++.++.
T Consensus 20 ~~~a~I~g~v~IG~~~~Ig~~~~I~~~~~~v~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~ 99 (173)
T d1v3wa_ 20 DENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHGAKVGNYVIIGI 99 (173)
T ss_dssp CTTSEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEESCEECSSEEECT
T ss_pred CCCCEEeCceEECCCCEECCCccccccccccccccccccccccccccccCCCcccCcceeeeeeeeeeeeecCCcccccc
Confidence 333333334444444444 344442 23455555554 23321 12333334444444444444445444444
Q ss_pred hhHHHhhhhCCCcceEeCCCCEEe-eeEECCCeEEcCCccc
Q 014953 366 DAEVASLLAEGRVPVGIGENTKIK-YEQLKPICHIVETKYD 405 (415)
Q Consensus 366 ~~~~~~~~~~~~~~~~Ig~~~~i~-~~~i~~~~~i~~~~~~ 405 (415)
++.+ ..+ ++||++|.|. +|+|.++..|++++..
T Consensus 100 ~~~i----~~g---v~Ig~~~vIgagsvV~~~~~i~~~~iv 133 (173)
T d1v3wa_ 100 SSVI----LDG---AKIGDHVIIGAGAVVPPNKEIPDYSLV 133 (173)
T ss_dssp TCEE----CTT---CEECSSEEECTTCEECTTCEECTTEEE
T ss_pred eeee----cCC---EEEcceeEEcCCcEEeCCeEeCCCCEE
Confidence 3222 222 5566666665 5666666666665543
|
| >d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Serine acetyltransferase domain: Serine acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=98.10 E-value=1.9e-06 Score=74.83 Aligned_cols=35 Identities=17% Similarity=0.189 Sum_probs=30.4
Q ss_pred eEeCCCCEEe-eeEECCCeEEcCCcccCcccccccc
Q 014953 380 VGIGENTKIK-YEQLKPICHIVETKYDSSTISRFSL 414 (415)
Q Consensus 380 ~~Ig~~~~i~-~~~i~~~~~i~~~~~~~~~~~~~~~ 414 (415)
|.||.|+.|- +..||++++||+++.+.+.+-+++.
T Consensus 196 v~IGaga~Ilg~v~IG~~a~IgAgsvV~kdVp~~~v 231 (241)
T d1ssqa_ 196 VMIGAGAKILGNIEVGKYAKIGANSVVLNPVPEYAT 231 (241)
T ss_dssp CEECTTCEEESSCEECTTCEECTTCEECSCBCTTCE
T ss_pred eEECCCCEEcCCcEECCCCEECCCCEECCCCCCCCE
Confidence 8899999887 8999999999999998888877764
|
| >d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Maltose O-acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=97.88 E-value=1e-05 Score=66.95 Aligned_cols=16 Identities=25% Similarity=0.339 Sum_probs=6.9
Q ss_pred eEeCCCCEEe-eeEECC
Q 014953 380 VGIGENTKIK-YEQLKP 395 (415)
Q Consensus 380 ~~Ig~~~~i~-~~~i~~ 395 (415)
++||+||.|. ++++.+
T Consensus 147 v~IG~~~vIgagsvV~k 163 (182)
T d1ocxa_ 147 VTIGDNVVVASGAVVTK 163 (182)
T ss_dssp CEECTTCEECTTCEECS
T ss_pred EEECCCCEECCCCEEcc
Confidence 4444444444 444433
|
| >d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: YdcK-like domain: Hypothetical protein YdcK species: Salmonella enterica [TaxId: 28901]
Probab=97.83 E-value=1.3e-05 Score=72.92 Aligned_cols=73 Identities=11% Similarity=0.167 Sum_probs=48.1
Q ss_pred CCCCCccccCccCCCeee-cCCccc-cceECCCCEEcceEE-eeeEEccCcEECCCcEEeecEEeCCccccchhHH
Q 014953 297 DATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFITSSFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAEV 369 (415)
Q Consensus 297 ~~~~~~~~~~~i~~~~~i-~~~~i~-~~~ig~~~~I~~~~i-~~svig~~~~ig~~~~i~~sii~~~~~~~~~~~~ 369 (415)
++++.+.+.+.+.+++.+ +.+.|. ++.||++|.|+++.| .++.|+++|+|++++.+.++.+.++.++...+.+
T Consensus 61 ~~nA~V~~~a~I~~na~i~~~~~I~~~a~Ig~n~~ig~a~I~~~a~I~~n~~i~~~~~i~~~~i~g~~~v~~~a~i 136 (320)
T d2f9ca1 61 DENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECAIYGDARVLNQSEI 136 (320)
T ss_dssp STTCEECSSCEECTTCEECSSCEECSSCEECSSCEESSCEECSSEEECSSCEEESCEECSSEEECSSCEEESSCEE
T ss_pred CCCcEECCCCEECCCCEECCCcEECCCcEECCcEEECCcEEEcCcEEeeeeeecCccEEeeeEEECCeEEeCCcEE
Confidence 344555566666666666 555553 677777777776666 4677888888877777777777777666555433
|
| >d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Enterococcus faecium, VAT(D) [TaxId: 1352]
Probab=97.80 E-value=6.1e-06 Score=69.82 Aligned_cols=26 Identities=19% Similarity=0.105 Sum_probs=21.1
Q ss_pred ceEeCCCCEEe-eeEECCCeEEcCCcc
Q 014953 379 PVGIGENTKIK-YEQLKPICHIVETKY 404 (415)
Q Consensus 379 ~~~Ig~~~~i~-~~~i~~~~~i~~~~~ 404 (415)
++.||++|.|. +|+|.++++|++++.
T Consensus 113 ~v~IGd~v~IG~~~~I~~gv~IG~~~~ 139 (203)
T d1mr7a_ 113 DTIIGNDVWIGKDVVIMPGVKIGDGAI 139 (203)
T ss_dssp CEEECSSCEECTTCEECTTCEECTTCE
T ss_pred CeEECCEEEECCceeEEeEEEEcCCCE
Confidence 37788888887 888888888888875
|
| >d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.78 E-value=3.6e-05 Score=64.66 Aligned_cols=24 Identities=17% Similarity=0.354 Sum_probs=11.6
Q ss_pred eeEEccCcEECCCcEEeecEEeCC
Q 014953 337 HSVVGIRSRINANVHLKDTMMLGA 360 (415)
Q Consensus 337 ~svig~~~~ig~~~~i~~sii~~~ 360 (415)
++.||++|+|++++.|.++.++.+
T Consensus 32 ~v~IG~~~~I~~~~~I~~~~~~~~ 55 (201)
T d2oi6a1 32 NVTLGHRVKIGTGCVIKNSVIGDD 55 (201)
T ss_dssp EEEECTTCEECTTCEEESCEECTT
T ss_pred ceEECCCcEECCCEEEeeeccCCc
Confidence 445555555555555544444433
|
| >d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Serine acetyltransferase domain: Serine acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=97.62 E-value=5e-05 Score=65.62 Aligned_cols=51 Identities=16% Similarity=0.076 Sum_probs=24.8
Q ss_pred ccccCccCCCeee-c--CCccc-cceECCCCEEc-ceEE---------eeeEEccCcEECCCcEE
Q 014953 302 IYTSRRNLPPSKI-D--DSKIV-DSIISHGSFIT-SSFI---------EHSVVGIRSRINANVHL 352 (415)
Q Consensus 302 ~~~~~~i~~~~~i-~--~~~i~-~~~ig~~~~I~-~~~i---------~~svig~~~~ig~~~~i 352 (415)
+.+.+.|++++.+ . +..|. ++.||.+|.|. ++++ .+.+||++|.||.||+|
T Consensus 140 I~~~~~Ig~g~~i~h~~givig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~Ig~~v~IGaga~I 204 (241)
T d1ssqa_ 140 IHPAAKIGHGIMFDHATGIVVGETSVIENDVSILQGVTLGGTGKESGDRHPKVREGVMIGAGAKI 204 (241)
T ss_dssp ECTTCEECSSCEESSCTTCEECTTCEECTTCEECTTCEEECCSSSCSSCSCEECTTCEECTTCEE
T ss_pred cccCCEEccCcccCccceEEEeccceecCCeeecccccccccccCCCCCCCccCCCeEECCCCEE
Confidence 3444555555555 1 22222 44455555554 3333 13567777777755543
|
| >d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: YdcK-like domain: Hypothetical protein YdcK species: Salmonella enterica [TaxId: 28901]
Probab=97.29 E-value=0.00044 Score=62.29 Aligned_cols=58 Identities=14% Similarity=0.237 Sum_probs=32.4
Q ss_pred ccCccCCCeee-cCCccc-cceECCCCEEc-ceEEeeeEEccCcEECCCcEEeecEEeCCc
Q 014953 304 TSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGAD 361 (415)
Q Consensus 304 ~~~~i~~~~~i-~~~~i~-~~~ig~~~~I~-~~~i~~svig~~~~ig~~~~i~~sii~~~~ 361 (415)
..+.+.+++.+ .+++|. ++.|+.+++|+ ++.+.++.|.+++.|+.+++|.++.+.+++
T Consensus 62 ~nA~V~~~a~I~~na~i~~~~~I~~~a~Ig~n~~ig~a~I~~~a~I~~n~~i~~~~~i~~~ 122 (320)
T d2f9ca1 62 ENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREEC 122 (320)
T ss_dssp TTCEECSSCEECTTCEECSSCEECSSCEECSSCEESSCEECSSEEECSSCEEESCEECSSE
T ss_pred CCcEECCCCEECCCCEECCCcEECCCcEECCcEEECCcEEEcCcEEeeeeeecCccEEeee
Confidence 34555555555 445553 55556666665 355555666666666666666555555553
|
| >d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.26 E-value=0.00034 Score=58.85 Aligned_cols=26 Identities=15% Similarity=0.064 Sum_probs=19.1
Q ss_pred ceEeCCCCEEe-eeEECCCeEEcCCcc
Q 014953 379 PVGIGENTKIK-YEQLKPICHIVETKY 404 (415)
Q Consensus 379 ~~~Ig~~~~i~-~~~i~~~~~i~~~~~ 404 (415)
+++||++|.|. +|+|.++++|++++.
T Consensus 108 ~v~Igd~v~IG~~s~I~~gv~IG~~~v 134 (208)
T d1xata_ 108 DTLIGHEVWIGTEAMFMPGVRVGHGAI 134 (208)
T ss_dssp CEEECTTCEECTTCEECTTCEECTTCE
T ss_pred CEEEcCCeEECccccccCCeEeCCCCE
Confidence 36777777776 777777777777764
|
| >d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Exostosin domain: Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.23 E-value=0.32 Score=39.81 Aligned_cols=104 Identities=14% Similarity=0.020 Sum_probs=61.1
Q ss_pred ceeeCCcceeehhehhhhhccCCc-EEEEEcccChhHHHHHHHhhccCCCCcccCCceEEEecCccCCCCCCCccccchH
Q 014953 33 AVPIGGAYRLIDVPMSNCINSGIN-KVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTA 111 (415)
Q Consensus 33 llpv~g~~pli~~~l~~l~~~gi~-~I~vv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~Gt~ 111 (415)
++|.-|++..|..+|+.+.+.... +++||.....+.-.+.+.+.. .. .. . ..+. ..+. .|.+
T Consensus 8 ii~tyn~~~~l~~~l~sl~~q~~~~~~iiV~d~~sd~~~~~i~~~~--~~---~~-~-~~~~-~~~~---------~g~~ 70 (265)
T d1omza_ 8 IMQTYNRTDLLLRLLNHYQAVPSLHKVIVVWNNVGEKGPEELWNSL--GP---HP-I-PVIF-KPQT---------ANKM 70 (265)
T ss_dssp EEEESSCHHHHHHHHHHHTTSTTEEEEEEEECCTTCCCTHHHHHHT--CC---CS-S-CEEE-EECS---------SCCG
T ss_pred EEEcCCCHHHHHHHHHHHHcCCCcCeEEEEECCCCCccHHHHHHHh--cc---cc-e-EEEE-ecCC---------CCch
Confidence 456667767899999999877553 455554433322222222221 11 00 0 1111 1222 3666
Q ss_pred HHHHHhhhhhcCCCCCCcCeEEEEcCCeecccC-hHHHHHHHHHcCCcE
Q 014953 112 DAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADI 159 (415)
Q Consensus 112 ~al~~~~~~i~~~~~~~~~~~lv~~gD~i~~~~-l~~~l~~h~~~~~~~ 159 (415)
.+...++...+ .+.++++.+|.+...+ +..+++.+.+.+...
T Consensus 71 ~a~n~~~~~a~------ge~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~ 113 (265)
T d1omza_ 71 RNRLQVFPEVE------TNAVLMVDDDTLISAQDLVFAFSIWQQFPDQI 113 (265)
T ss_dssp GGGGSCCTTCC------SSEEEEECTTEEECHHHHHHHHHHHTTSTTSE
T ss_pred hhhhhhHHhCC------cCEEEEeCcccCCCHHHHHHHHHHHHhCCCcc
Confidence 67666655543 5899999999988887 788888776665543
|