Citrus Sinensis ID: 014968

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-----
MMLKLLVLFLFFQISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDSIPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPGIFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEEVLSNREIEKEGFEEAEKVRKAREEEEAQRAREEGEKRRRERGYDRRRYRDRYRDKYRRHDYLDDDYHDEL
cHHHHHHHHHHHccccEEEEEEccccccccccEEEcccccccccccEEEEEccccccccccccEEEccccccEEEccccccccccccEEEEEEEEEccccccccccEEEEEcccccccccccccccEEEEccccccccccEEEEEEccccccccccccccccccccccEEEEEEccccEEEEEEccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEcccEEEEEEEcccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHcccccccccccccccc
cHHHHHHHHHHHHHcccEEEEEEEccccccccEEEEccccccccccEEEEEcccccccccccccEEccccEEEEEEcccccccccccEEEEEEEEEEccccccccEEEEEccccccHHHccccccEEEEEccccccccccEEEEEEEEcccccEEcEcccccccccEEEEEEEEcccccEEEEEcccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccEEEEEEEEEccccEEccEEEEccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHcccccccccccccccccccccccccccccc
MMLKLLVLFLFFQISVSEIFFeerfddgwrsrwvisdwkrsegkagyfkhtagkwhgdpddkgiqthTDARHYAISakipefsnknrTLVVQYSIRFEQDIECGGGYIKLLSAYVNQkkfggdapyslmfgpdicgtqkKHLHVILSYqgqnypikkelecetdKLTHFYTfilrpdasysilidnrerdsgsmytdwdilpprkikavnakkpadwddreyiddpnavkpegydsipkeipdpkakkpdnwdededglwkppkipnpaykgpwrpkriknpnykgkwkipyidnpgifeddpdlyvlkpikYVGIEVWQvkagsvydnilicddpAYAKQVVEEVLSNREIEKEGFEEAEKVRKAREEEEAQRAREEGEKRrrergydrrryrdryrdkyrrhdyldddyhdel
MMLKLLVLFLFFQISVSEIFFeerfddgwrsRWVISDWKRSEGKAGYFKhtagkwhgdpddKGIQTHTDARHYAIsakipefsnknrTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTfilrpdasysILIDNRerdsgsmytdwdilpprkikavnakkpadwddreyiddpnavkpegydsipkeipdpkakkpdnwdededglwkppkipnpaykgpwrpkriknpnykgkWKIPYIDNPGIFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEEVLsnreiekegfeeaekvrkareeeeaqrareegekrrrergydrrryrdryrdkyrrhdyldddyhdel
MMlkllvlflffQISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDSIPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPGIFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEEVLSNReiekegfeeaekvrkareeeeaqrareegekrrrergydrrryrdryrdkyrrhdyldddyhdeL
**LKLLVLFLFFQISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVN***************************************************************WRPKRIKNPNYKGKWKIPYIDNPGIFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEEVL********************************************************************
MMLKLLVLFLFFQISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKI*****K***DWDDREYIDDPNAVKPEGYDSIPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPGIFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEEVLS***************************************************************HD**
MMLKLLVLFLFFQISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDSIPKEIPDPK***********DGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPGIFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEEVLSNREIEKE*********************************DRRRYRDRYRDKYRRHDYLDDDYHDEL
MMLKLLVLFLFFQISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDSIPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPGIFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEEVLSNREIEKEGFEEA*******************************************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MMLKLLVLFLFFQISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDSIPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPGIFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEEVLSNREIEKEGFxxxxxxxxxxxxxxxxxxxxxxxxxxxxRGYDRRRYRDRYRDKYRRHDYLDDDYHDEL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query415 2.2.26 [Sep-21-2011]
O04153424 Calreticulin-3 OS=Arabido yes no 0.978 0.957 0.752 1e-174
Q40401416 Calreticulin OS=Nicotiana N/A no 0.826 0.824 0.643 1e-128
P93508415 Calreticulin OS=Ricinus c N/A no 0.8 0.8 0.654 1e-128
Q9ZPP1416 Calreticulin OS=Berberis N/A no 0.819 0.817 0.654 1e-126
Q38858424 Calreticulin-2 OS=Arabido no no 0.855 0.837 0.613 1e-126
O04151425 Calreticulin-1 OS=Arabido no no 0.848 0.828 0.618 1e-126
O81919416 Calreticulin OS=Beta vulg N/A no 0.826 0.824 0.626 1e-125
Q9XF98421 Calreticulin OS=Prunus ar N/A no 0.814 0.802 0.641 1e-123
Q9SLY8424 Calreticulin OS=Oryza sat no no 0.821 0.804 0.609 1e-119
Q9SP22420 Calreticulin OS=Zea mays N/A no 0.819 0.809 0.605 1e-116
>sp|O04153|CALR3_ARATH Calreticulin-3 OS=Arabidopsis thaliana GN=CRT3 PE=2 SV=2 Back     alignment and function desciption
 Score =  612 bits (1579), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 319/424 (75%), Positives = 363/424 (85%), Gaps = 18/424 (4%)

Query: 4   KLLVLFLFFQISV--------SEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKW 55
           KL     FF +SV        SEIF EE F+ GW+SRWV+SDWKR+EGKAG FKHTAGKW
Sbjct: 7   KLSFFCFFFLVSVLTLAPLAFSEIFLEEHFEGGWKSRWVLSDWKRNEGKAGTFKHTAGKW 66

Query: 56  HGDPDDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYV 115
            GDPD+KGIQT+ DA+HYAISAKIPEFSNKNRTLVVQYS++ EQDIECGG YIKLLS YV
Sbjct: 67  PGDPDNKGIQTYNDAKHYAISAKIPEFSNKNRTLVVQYSVKIEQDIECGGAYIKLLSGYV 126

Query: 116 NQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILR 175
           NQK+FGGD PYSLMFGPDICGTQ K LHVI+SYQGQNYPIKK+L+CETDKL HFYTFILR
Sbjct: 127 NQKQFGGDTPYSLMFGPDICGTQTKKLHVIVSYQGQNYPIKKDLQCETDKLNHFYTFILR 186

Query: 176 PDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYD 235
           PDASYS+L+DN+ER+ GSMYTDWDILPPRKIK  NAKKP DWDDREYIDDPN VKPEG+D
Sbjct: 187 PDASYSVLVDNKEREFGSMYTDWDILPPRKIKVKNAKKPEDWDDREYIDDPNDVKPEGFD 246

Query: 236 SIPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDN 295
           SIP+EIPD KAK+P++WDE+E+GLW+PPKIPN AYKGPW+ KRIKNPNYKGKWK P+IDN
Sbjct: 247 SIPREIPDRKAKEPEDWDEEENGLWEPPKIPNSAYKGPWKAKRIKNPNYKGKWKNPWIDN 306

Query: 296 PGIFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEEVLS-NREIEK 354
           P  FEDDPDLYVLK IKY GIEVWQVKAGS++DNILICDDPAYA+ +V++  + +RE EK
Sbjct: 307 PE-FEDDPDLYVLKSIKYAGIEVWQVKAGSIFDNILICDDPAYARSIVDDYFAQHRESEK 365

Query: 355 EGFEEAEKVRKAREEEEAQRAREEGEKRRRERGYDRRRYRDRYRDKYRR---HDYLDDDY 411
           E F EAEK RKARE+EEA+ AREEGE+RR+ER +   RY DR R +Y+R    DY+ DDY
Sbjct: 366 ELFAEAEKERKAREDEEARIAREEGERRRKERDH---RYGDRRR-RYKRPNPRDYM-DDY 420

Query: 412 HDEL 415
           HDEL
Sbjct: 421 HDEL 424
Molecular calcium-binding chaperone promoting folding, oligomeric assembly and quality control in the ER via the calreticulin/calnexin cycle. This lectin may interact transiently with almost all of the monoglucosylated glycoproteins that are synthesized in the ER.
Arabidopsis thaliana (taxid: 3702)
>sp|Q40401|CALR_NICPL Calreticulin OS=Nicotiana plumbaginifolia GN=CAL1 PE=2 SV=1 Back     alignment and function description
>sp|P93508|CALR_RICCO Calreticulin OS=Ricinus communis PE=2 SV=1 Back     alignment and function description
>sp|Q9ZPP1|CALR_BERST Calreticulin OS=Berberis stolonifera PE=2 SV=1 Back     alignment and function description
>sp|Q38858|CALR2_ARATH Calreticulin-2 OS=Arabidopsis thaliana GN=CRT2 PE=1 SV=3 Back     alignment and function description
>sp|O04151|CALR1_ARATH Calreticulin-1 OS=Arabidopsis thaliana GN=CRT1 PE=1 SV=1 Back     alignment and function description
>sp|O81919|CALR_BETVU Calreticulin OS=Beta vulgaris PE=2 SV=1 Back     alignment and function description
>sp|Q9XF98|CALR_PRUAR Calreticulin OS=Prunus armeniaca PE=2 SV=1 Back     alignment and function description
>sp|Q9SLY8|CALR_ORYSJ Calreticulin OS=Oryza sativa subsp. japonica GN=Os07g0246200 PE=1 SV=2 Back     alignment and function description
>sp|Q9SP22|CALR_MAIZE Calreticulin OS=Zea mays GN=CRT PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query415
224093048424 predicted protein [Populus trichocarpa] 0.973 0.952 0.789 0.0
224146178421 predicted protein [Populus trichocarpa] 0.995 0.980 0.841 1e-180
357507831421 Calreticulin-3 [Medicago truncatula] gi| 0.990 0.976 0.812 1e-180
255638717408 unknown [Glycine max] 0.872 0.887 0.823 1e-179
255547520423 calreticulin, putative [Ricinus communis 0.990 0.971 0.834 1e-179
356566955421 PREDICTED: calreticulin-3-like, partial 0.872 0.859 0.826 1e-179
356531872422 PREDICTED: calreticulin-3-like [Glycine 0.949 0.933 0.803 1e-179
217074662393 unknown [Medicago truncatula] 0.922 0.974 0.826 1e-175
224133234434 predicted protein [Populus trichocarpa] 0.966 0.923 0.790 1e-175
297849152423 hypothetical protein ARALYDRAFT_888076 [ 0.980 0.962 0.758 1e-174
>gi|224093048|ref|XP_002309786.1| predicted protein [Populus trichocarpa] gi|222852689|gb|EEE90236.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  647 bits (1668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/418 (78%), Positives = 372/418 (88%), Gaps = 14/418 (3%)

Query: 1   MMLKLLVLFLFFQISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPD 60
           ++  +  LFLF  +++SEIFFEERF DGW+ RWV+SDWKRSEGKAG FK+TAGKW GDPD
Sbjct: 18  LLFTIHCLFLF-PVTLSEIFFEERFQDGWKDRWVLSDWKRSEGKAGTFKYTAGKWPGDPD 76

Query: 61  DKGIQTHTDARHYAISAKI-PEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKK 119
           DKGIQT+ DA+H+AISAKI PEFSNKNRTLVVQYSI+FEQ+IECGGGYIKL S YVNQKK
Sbjct: 77  DKGIQTYNDAKHFAISAKISPEFSNKNRTLVVQYSIKFEQEIECGGGYIKLFSGYVNQKK 136

Query: 120 FGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDAS 179
           FGGD PYS MFGPDICGTQ K LHVI+SYQGQNYPIKK+L+CETDKLTHFYTFILRPDAS
Sbjct: 137 FGGDTPYSFMFGPDICGTQTKKLHVIMSYQGQNYPIKKDLQCETDKLTHFYTFILRPDAS 196

Query: 180 YSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDSIPK 239
           YS+L+DNRER+SG+MYTDWDILPP KIK   AK+PADWDDREYI+DPN VKPEGYDSIP+
Sbjct: 197 YSVLVDNRERESGTMYTDWDILPPPKIKDTKAKRPADWDDREYIEDPNDVKPEGYDSIPR 256

Query: 240 EIPDPKAKKPDNWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPGIF 299
           EIPDPKAK+PDNWDE+EDG+W+PPKIPNPAYKGPW+ K+IKNPNYKGKWK P+IDNP  F
Sbjct: 257 EIPDPKAKEPDNWDEEEDGIWRPPKIPNPAYKGPWKRKKIKNPNYKGKWKTPWIDNPE-F 315

Query: 300 EDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEEVLSNREIEKEGFEE 359
           EDDPDLYVLKPIKYVGIEVWQVKAGS++DNILICDDP YA+++V++V  NREIEK+ FEE
Sbjct: 316 EDDPDLYVLKPIKYVGIEVWQVKAGSIFDNILICDDPQYAREIVKDVFQNREIEKDAFEE 375

Query: 360 AEKVRKAREEEEAQRAREEGEKRRRERGYDRRRYRDRYRDKYRRHDYLD--DDYHDEL 415
           AEKVR+AREEEEAQRAREEGEKRR+ERGY + R         RRHD  D  DDYHDEL
Sbjct: 376 AEKVRRAREEEEAQRAREEGEKRRKERGYRKPR---------RRHDPRDYLDDYHDEL 424

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224146178|ref|XP_002325909.1| predicted protein [Populus trichocarpa] gi|222862784|gb|EEF00291.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357507831|ref|XP_003624204.1| Calreticulin-3 [Medicago truncatula] gi|355499219|gb|AES80422.1| Calreticulin-3 [Medicago truncatula] Back     alignment and taxonomy information
>gi|255638717|gb|ACU19663.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|255547520|ref|XP_002514817.1| calreticulin, putative [Ricinus communis] gi|223545868|gb|EEF47371.1| calreticulin, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356566955|ref|XP_003551690.1| PREDICTED: calreticulin-3-like, partial [Glycine max] Back     alignment and taxonomy information
>gi|356531872|ref|XP_003534500.1| PREDICTED: calreticulin-3-like [Glycine max] Back     alignment and taxonomy information
>gi|217074662|gb|ACJ85691.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|224133234|ref|XP_002327993.1| predicted protein [Populus trichocarpa] gi|222837402|gb|EEE75781.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297849152|ref|XP_002892457.1| hypothetical protein ARALYDRAFT_888076 [Arabidopsis lyrata subsp. lyrata] gi|297338299|gb|EFH68716.1| hypothetical protein ARALYDRAFT_888076 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query415
TAIR|locus:2201816424 CRT3 "calreticulin 3" [Arabido 0.797 0.780 0.810 8.6e-159
UNIPROTKB|P93508415 P93508 "Calreticulin" [Ricinus 0.797 0.797 0.656 1.9e-131
TAIR|locus:2195326424 CRT1b "calreticulin 1b" [Arabi 0.797 0.780 0.641 9.6e-128
TAIR|locus:2010723425 CRT1a "calreticulin 1a" [Arabi 0.790 0.771 0.644 1.1e-126
UNIPROTKB|Q9SLY8424 LOC_Os07g14270 "Calreticulin" 0.787 0.771 0.628 1e-123
DICTYBASE|DDB_G0283539424 crtA "calreticulin" [Dictyoste 0.792 0.775 0.5 2.8e-98
ZFIN|ZDB-GENE-000208-17418 calr "calreticulin" [Danio rer 0.778 0.772 0.522 6.6e-97
ZFIN|ZDB-GENE-030131-9907417 calrl "calreticulin like" [Dan 0.780 0.776 0.518 2e-95
ZFIN|ZDB-GENE-030131-4042419 calrl2 "calreticulin, like 2" 0.780 0.773 0.506 6.8e-95
UNIPROTKB|Q7Z1E6398 crt "Calreticulin" [Bombyx mor 0.790 0.824 0.516 1.8e-94
TAIR|locus:2201816 CRT3 "calreticulin 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1547 (549.6 bits), Expect = 8.6e-159, P = 8.6e-159
 Identities = 269/332 (81%), Positives = 304/332 (91%)

Query:    14 ISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHY 73
             ++ SEIF EE F+ GW+SRWV+SDWKR+EGKAG FKHTAGKW GDPD+KGIQT+ DA+HY
Sbjct:    25 LAFSEIFLEEHFEGGWKSRWVLSDWKRNEGKAGTFKHTAGKWPGDPDNKGIQTYNDAKHY 84

Query:    74 AISAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPD 133
             AISAKIPEFSNKNRTLVVQYS++ EQDIECGG YIKLLS YVNQK+FGGD PYSLMFGPD
Sbjct:    85 AISAKIPEFSNKNRTLVVQYSVKIEQDIECGGAYIKLLSGYVNQKQFGGDTPYSLMFGPD 144

Query:   134 ICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGS 193
             ICGTQ K LHVI+SYQGQNYPIKK+L+CETDKL HFYTFILRPDASYS+L+DN+ER+ GS
Sbjct:   145 ICGTQTKKLHVIVSYQGQNYPIKKDLQCETDKLNHFYTFILRPDASYSVLVDNKEREFGS 204

Query:   194 MYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDSIPKEIPDPKAKKPDNWD 253
             MYTDWDILPPRKIK  NAKKP DWDDREYIDDPN VKPEG+DSIP+EIPD KAK+P++WD
Sbjct:   205 MYTDWDILPPRKIKVKNAKKPEDWDDREYIDDPNDVKPEGFDSIPREIPDRKAKEPEDWD 264

Query:   254 EDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPGIFEDDPDLYVLKPIKY 313
             E+E+GLW+PPKIPN AYKGPW+ KRIKNPNYKGKWK P+IDNP  FEDDPDLYVLK IKY
Sbjct:   265 EEENGLWEPPKIPNSAYKGPWKAKRIKNPNYKGKWKNPWIDNPE-FEDDPDLYVLKSIKY 323

Query:   314 VGIEVWQVKAGSVYDNILICDDPAYAKQVVEE 345
              GIEVWQVKAGS++DNILICDDPAYA+ +V++
Sbjct:   324 AGIEVWQVKAGSIFDNILICDDPAYARSIVDD 355
GO:0005509 "calcium ion binding" evidence=IEA;ISS
GO:0005783 "endoplasmic reticulum" evidence=IEA;IDA
GO:0006457 "protein folding" evidence=IEA;IGI
GO:0009507 "chloroplast" evidence=ISM
GO:0051082 "unfolded protein binding" evidence=IEA
GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP
GO:0042742 "defense response to bacterium" evidence=IMP
GO:0005789 "endoplasmic reticulum membrane" evidence=IDA
GO:0009626 "plant-type hypersensitive response" evidence=IMP
GO:0046283 "anthocyanin-containing compound metabolic process" evidence=IMP
GO:0055074 "calcium ion homeostasis" evidence=IGI
GO:0006995 "cellular response to nitrogen starvation" evidence=RCA
GO:0009617 "response to bacterium" evidence=RCA
GO:0009627 "systemic acquired resistance" evidence=RCA
GO:0009697 "salicylic acid biosynthetic process" evidence=RCA
GO:0031347 "regulation of defense response" evidence=RCA
GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA
GO:0045087 "innate immune response" evidence=RCA
UNIPROTKB|P93508 P93508 "Calreticulin" [Ricinus communis (taxid:3988)] Back     alignment and assigned GO terms
TAIR|locus:2195326 CRT1b "calreticulin 1b" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010723 CRT1a "calreticulin 1a" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9SLY8 LOC_Os07g14270 "Calreticulin" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0283539 crtA "calreticulin" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-000208-17 calr "calreticulin" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-9907 calrl "calreticulin like" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-4042 calrl2 "calreticulin, like 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q7Z1E6 crt "Calreticulin" [Bombyx mori (taxid:7091)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O04153CALR3_ARATHNo assigned EC number0.75230.97830.9575yesno
P18418CALR_RATNo assigned EC number0.50450.77830.7764yesno
P29413CALR_DROMENo assigned EC number0.46380.88430.9039yesno
P27797CALR_HUMANNo assigned EC number0.50150.77830.7745yesno
Q9XF98CALR_PRUARNo assigned EC number0.64110.81440.8028N/Ano
O81919CALR_BETVUNo assigned EC number0.62600.82650.8245N/Ano
Q9SP22CALR_MAIZENo assigned EC number0.60520.81920.8095N/Ano
Q9ZPP1CALR_BERSTNo assigned EC number0.65490.81920.8173N/Ano
Q8K3H7CALR_CRIGRNo assigned EC number0.50150.77830.7745yesno
Q40401CALR_NICPLNo assigned EC number0.64340.82650.8245N/Ano
P28491CALR_PIGNo assigned EC number0.47750.82160.8177yesno
Q23858CALR_DICDINo assigned EC number0.48120.88910.8702yesno
Q9STD3CALR_CHLRENo assigned EC number0.53500.81200.8023N/Ano
Q7Z1E6CALR_BOMMONo assigned EC number0.51170.80480.8391N/Ano
P14211CALR_MOUSENo assigned EC number0.50750.77830.7764yesno
P15253CALR_RABITNo assigned EC number0.48030.82160.8157yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00070148
hypothetical protein (425 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query415
pfam00262359 pfam00262, Calreticulin, Calreticulin family 1e-133
>gnl|CDD|215825 pfam00262, Calreticulin, Calreticulin family Back     alignment and domain information 
 Score =  386 bits (993), Expect = e-133
 Identities = 167/363 (46%), Positives = 215/363 (59%), Gaps = 53/363 (14%)

Query: 19  IFFEERFDDG--WRSRWVISDWKRSEGKAGYFKHTAGKWHGD-PDDKGIQTHTDARHYAI 75
           ++F E+FDD   W  RW+ S  K+ +   G +K  AGK++G    DKG+ T  DA+ YAI
Sbjct: 1   VYFFEQFDDDDLWEKRWIPSKAKKDD--DGKWKVEAGKFYGGEEKDKGLVTKDDAKFYAI 58

Query: 76  SAKIPE-FSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDI 134
           SAK P+ FSNK +TLVVQY ++ +Q I+CGG YIKLLS   +QK F G+ PY++MFGPDI
Sbjct: 59  SAKFPKPFSNKGKTLVVQYEVKLQQGIDCGGAYIKLLSKDFDQKDFSGETPYTIMFGPDI 118

Query: 135 CGTQKKHLHVIL------SYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRE 188
           CG+  K +H I        Y+ + + IKK +    DKLTH YT I+RPD ++ ILID   
Sbjct: 119 CGSDTKKVHFIFRHKPITGYKEEKHLIKKPISR-CDKLTHLYTLIIRPDNTFEILIDGEV 177

Query: 189 RDSGSMYTDWD--ILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYD-SIPKEIPDPK 245
             SGS+  D+D    PP++I     KKP DWDDRE I DP A KPE +D   P+ IPDP 
Sbjct: 178 VKSGSLLEDFDPPFNPPKEIPDPTDKKPEDWDDREKIPDPEAKKPEDWDEDEPEFIPDPN 237

Query: 246 AKKPDNW-------------------DEDEDGLWKPPKIPNPA----------------- 269
           A KP+ W                   D++EDG W+ P IPNP                  
Sbjct: 238 AVKPEGWLEDEPEYIPDPDATKPEDWDDEEDGEWEAPMIPNPKCEKACGCGKPPMIKNPK 297

Query: 270 YKGPWRPKRIKNPNYKGKWKIPYIDNPGIFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDN 329
           YKG W+P  I NPNYKG WK   I NP  FE DP+ Y L+PI  +G E+WQVK+G ++DN
Sbjct: 298 YKGKWKPPMIDNPNYKGVWKPRKIPNPDYFE-DPNPYNLEPIGAIGFELWQVKSGILFDN 356

Query: 330 ILI 332
           ILI
Sbjct: 357 ILI 359

Length = 359

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 415
KOG0674406 consensus Calreticulin [Posttranslational modifica 100.0
PF00262367 Calreticulin: Calreticulin family; InterPro: IPR00 100.0
KOG0675558 consensus Calnexin [Posttranslational modification 100.0
KOG0674406 consensus Calreticulin [Posttranslational modifica 100.0
PF00262367 Calreticulin: Calreticulin family; InterPro: IPR00 99.96
KOG0675558 consensus Calnexin [Posttranslational modification 99.89
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=1.4e-135  Score=995.39  Aligned_cols=360  Identities=53%  Similarity=1.037  Sum_probs=347.8

Q ss_pred             ChhH--HHHHHHHhhccceeeeeecccC--CCcccCeeeCCcccCCCCCCcEEeecCcccCCCC-CceeeeCcccchhhh
Q 014968            1 MMLK--LLVLFLFFQISVSEIFFEERFD--DGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPD-DKGIQTHTDARHYAI   75 (415)
Q Consensus         1 ~~~~--~~~~l~~~~~~~~~v~F~E~F~--~~w~~rWv~S~~~k~~~~~G~~~~~~gk~~g~~~-d~GL~~~~~ar~yaI   75 (415)
                      ||..  ++|||+++++++++|||.|.|.  ++|+.|||+|++++.  .+|.|.+++|+|+|++. |+||||+++||||||
T Consensus         1 ~~~~~~~~~ll~~v~~~sa~Vyf~E~F~d~~~w~~rwv~skhk~~--~fG~f~ls~g~f~g~~~~DkGiqTsqd~rfya~   78 (406)
T KOG0674|consen    1 MLPSFWVLCLLALVALASAEVYFKEEFLDEDGWENRWVQSKHKSR--DFGKFVLSAGKFYGDEEKDKGIQTSQDARFYAI   78 (406)
T ss_pred             CchhHHHHHHHHHHHHHhhhhhhhhhhcCCCCceEEEEEeecccc--ccCceEeccccccCcccccccccccccceeeee
Confidence            4444  5677777888899999999995  579999999999864  68999999999999988 999999999999999


Q ss_pred             hcCCCCCCCCCCceEEEEEEeeecccccCCceeEEecccccccccCCCCCceeeecCCccCCCCCeEEEEEeeCCCcccc
Q 014968           76 SAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPI  155 (415)
Q Consensus        76 S~k~~~f~~k~k~LVvQYeVk~e~~idCGGaYiKLl~~~~d~~~f~~~TpY~IMFGPD~Cg~~~~kvH~Il~~~~~~~~i  155 (415)
                      |++|++|+|++++|||||+|||+|.|+|||||||||++++||.+|+++|||.|||||||||++|+|||+||+|+++||+|
T Consensus        79 sa~F~~FsnK~kTLv~q~tVkheQ~~dcgggyiKl~~~d~Dq~~f~ges~y~iMfGPDICG~~tkKVhvil~ykg~nhli  158 (406)
T KOG0674|consen   79 SAKFKPFSNKGKTLVIQFTVKHEQKIDCGGGYIKLFPADLDQTDFHGESPYNIMFGPDICGFGTKKVHVILNYKGKNHLI  158 (406)
T ss_pred             ecccccccccCceEEEEEEecccccccCCceeEEeeecccchhhcCCCcccccccCCcccCCCCceEEEEEecccccchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCcccCCCccceeeEEeCCCCceEEEEcceeecCCCCCCCCCCCCCccccCCCCCCCCCCCCCcccCCCCCCCCCCCC
Q 014968          156 KKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYD  235 (415)
Q Consensus       156 kk~~~~~~D~ltHlYTLIl~pd~tyeI~ID~~~~~~Gsl~~Dwd~~pp~~I~Dp~~~KP~DWdd~~~I~Dp~~~KPedWd  235 (415)
                      ++.++|++|++|||||||||||+||+|+|||+.+.+|||++||+++||++|.||.++||+||+++++|+||+++||++|+
T Consensus       159 kK~i~Ck~D~~tHlYTlIlRPd~TYeVkIDn~~~esGsle~DWdll~~KKikdP~a~KPedWDer~~I~DpeD~Kp~dwe  238 (406)
T KOG0674|consen  159 KKDIRCKDDELTHLYTLILRPDATYEVKIDNQQVESGSLEDDWDLLPPKKIKDPDAKKPEDWDEREYIPDPEDKKPQDWE  238 (406)
T ss_pred             ccccccccCCcceeEEEEecCCCeeEEEEcccccccCccccccccccccccCCccccCcccchhhccCCCccccCccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCcCCcCCCCCCCCCCCCcccCCCCCcccCCCcccccCceeee
Q 014968          236 SIPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPGIFEDDPDLYVLKPIKYVG  315 (415)
Q Consensus       236 ~~p~~I~dp~a~kP~dWd~~~dG~W~~p~I~NP~ykG~W~p~~I~NP~Ykg~W~~~~I~Np~~y~~d~~~~~~~~i~~iG  315 (415)
                       .|.+||||+|+||+|||+++||+|+||||+||.|+|+|+|++|+||+|||.|.+|+|.||+ |.+++.+|.+.+|++||
T Consensus       239 -~pehipDpdakKpedWddemDGEWe~P~i~nPey~gewkPkqi~np~yKg~w~hp~i~npe-y~~d~~ly~~~ni~~lg  316 (406)
T KOG0674|consen  239 -KPEHIPDPDAKKPEDWDDEMDGEWEAPMIPNPEYKGEWKPKQIKNPAYKGKWIHPEIDNPE-YPDDPELYHYENIGVLG  316 (406)
T ss_pred             -cccccCCcccCCcccccccccCCcCCCCCCCccccCccCcccccCccccceeeccccCCCc-CCCCcceeeecccceee
Confidence             7999999999999999999999999999999999999999999999999999999999999 99999999999999999


Q ss_pred             EeeEeecCCceeeeeEecCCHHHHHHHHHHhhcc-hhhhhhchHHHHHHH
Q 014968          316 IEVWQVKAGSVYDNILICDDPAYAKQVVEEVLSN-REIEKEGFEEAEKVR  364 (415)
Q Consensus       316 ~ElW~~~~g~~fDNili~dd~~~A~~~~~~t~~~-~~~E~~~~e~~e~~~  364 (415)
                      ||||||+||+||||||||+|+++|++++++||+. +.+|++|++++++.+
T Consensus       317 ldLWQVKSgtIFDN~LitdD~eyA~k~~~eTwg~~k~~ek~~~~~~~k~q  366 (406)
T KOG0674|consen  317 LDLWQVKSGTIFDNFLITDDEEYAEKFANETWGKTKDAEKEMKDKADKEQ  366 (406)
T ss_pred             eeEEEeecceeecceEecCCHHHHHHHHHhhhcccccHHHHhhhhhhhhc
Confidence            9999999999999999999999999999999998 999999999876544

>PF00262 Calreticulin: Calreticulin family; InterPro: IPR001580 Synonym(s): Calregulin, CRP55, HACBP Calreticulin [] is a high-capacity calcium-binding protein which is present in most tissues and located at the periphery of the endoplasmic (ER) and the sarcoplamic reticulum (SR) membranes Back     alignment and domain information
>KOG0675 consensus Calnexin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00262 Calreticulin: Calreticulin family; InterPro: IPR001580 Synonym(s): Calregulin, CRP55, HACBP Calreticulin [] is a high-capacity calcium-binding protein which is present in most tissues and located at the periphery of the endoplasmic (ER) and the sarcoplamic reticulum (SR) membranes Back     alignment and domain information
>KOG0675 consensus Calnexin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query415
3rg0_A332 Structural And Functional Relationships Between The 8e-76
1jhn_A424 Crystal Structure Of The Lumenal Domain Of Calnexin 2e-57
3o0v_A273 Crystal Structure Of The Calreticulin Lectin Domain 3e-50
3o0v_A273 Crystal Structure Of The Calreticulin Lectin Domain 3e-05
3pos_A265 Crystal Structure Of The Globular Domain Of Human C 1e-49
3pos_A265 Crystal Structure Of The Globular Domain Of Human C 1e-05
3o0w_A273 Structural Basis Of Carbohydrate Recognition By Cal 3e-49
3o0w_A273 Structural Basis Of Carbohydrate Recognition By Cal 3e-05
1hhn_A101 Calreticulin P-Domain Length = 101 3e-22
1k9c_A74 Solution Structure Of Calreticulin P-Domain Subdoma 3e-15
1k91_A37 Solution Structure Of Calreticulin P-Domain Subdoma 6e-06
3ici_C38 Crystal Structure Of Cyclophilin B In Complex With 9e-05
>pdb|3RG0|A Chain A, Structural And Functional Relationships Between The Lectin And Arm Domains Of Calreticulin Length = 332 Back     alignment and structure 
Iteration: 1

 Score =  280 bits (717), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 147/331 (44%), Positives = 209/331 (63%), Gaps = 38/331 (11%)
Query: 19  IFFEERFDDG--WRSRWVISDWKRSEGKAGYFKHTAGKWHGDPD-DKGIQTHTDARHYAI 75
           I+F+E+F DG  W +RWV S  K   GK   F  ++GK++GD + DKG+QT  DAR YA+
Sbjct: 7   IYFKEQFLDGDAWTNRWVESKHKSDFGK---FVLSSGKFYGDLEKDKGLQTSQDARFYAL 63
Query: 76  SAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDIC 135
           SAK   FSNK +TLVVQ++++ EQ+I+CGGGY+KL  + ++QK   GD+ Y++MFGPDIC
Sbjct: 64  SAKFEPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPSGLDQKDMHGDSEYNIMFGPDIC 123
Query: 136 GTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMY 195
           G   K +HVI +Y+G+N  I K++  + D+ TH YT I+RPD +Y + IDN + +SGS+ 
Sbjct: 124 GPGTKKVHVIFNYKGKNVLINKDIRSKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLE 183
Query: 196 TDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDSIPKEIPDPKAKKPDNWDED 255
            DWD LPP+KIK  +A KP DWD+R  IDDP   KPE                  +WD+ 
Sbjct: 184 DDWDFLPPKKIKDPDAAKPEDWDERAKIDDPTDSKPE------------------DWDKG 225
Query: 256 EDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPGIFEDDPDLYVLKPIKYVG 315
             G             G W+P++I NP+YKG W  P IDNP  +  D ++Y       +G
Sbjct: 226 GSG-------------GEWKPRQIDNPDYKGTWIHPEIDNPE-YSPDANIYAYDSFAVLG 271
Query: 316 IEVWQVKAGSVYDNILICDDPAYAKQVVEEV 346
           +++WQVK+G+++DN LI +D AYA++   E 
Sbjct: 272 LDLWQVKSGTIFDNFLITNDEAYAEEFGNET 302
>pdb|1JHN|A Chain A, Crystal Structure Of The Lumenal Domain Of Calnexin Length = 424 Back     alignment and structure
>pdb|3O0V|A Chain A, Crystal Structure Of The Calreticulin Lectin Domain Length = 273 Back     alignment and structure
>pdb|3O0V|A Chain A, Crystal Structure Of The Calreticulin Lectin Domain Length = 273 Back     alignment and structure
>pdb|3POS|A Chain A, Crystal Structure Of The Globular Domain Of Human Calreticulin Length = 265 Back     alignment and structure
>pdb|3POS|A Chain A, Crystal Structure Of The Globular Domain Of Human Calreticulin Length = 265 Back     alignment and structure
>pdb|3O0W|A Chain A, Structural Basis Of Carbohydrate Recognition By Calreticulin Length = 273 Back     alignment and structure
>pdb|3O0W|A Chain A, Structural Basis Of Carbohydrate Recognition By Calreticulin Length = 273 Back     alignment and structure
>pdb|1HHN|A Chain A, Calreticulin P-Domain Length = 101 Back     alignment and structure
>pdb|1K9C|A Chain A, Solution Structure Of Calreticulin P-Domain Subdomain (Residues 189-261) Length = 74 Back     alignment and structure
>pdb|1K91|A Chain A, Solution Structure Of Calreticulin P-Domain Subdomain (Residues 221-256) Length = 37 Back     alignment and structure
>pdb|3ICI|C Chain C, Crystal Structure Of Cyclophilin B In Complex With Calmegin Fragment Length = 38 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query415
3rg0_A332 Calreticulin; beta-sandwich, chaperone, monoglucos 1e-117
1jhn_A424 Calnexin; jelly-roll, beta sandwich, chaperone; 2. 1e-116
3pow_A265 Calreticulin; legume lectin fold, CNX/CRT family, 5e-72
3pow_A265 Calreticulin; legume lectin fold, CNX/CRT family, 1e-12
1hhn_A101 Calreticulin; molecular chaperone; NMR {Rattus nor 7e-38
3ici_C38 Calnexin, PP90; protein-protein complex, endoplasm 6e-14
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 3e-05
>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins binding, carbohydrate binding, calcium binding, endoplasmic reticulu; 2.57A {Mus musculus} Length = 332 Back     alignment and structure
 Score =  345 bits (885), Expect = e-117
 Identities = 149/363 (41%), Positives = 215/363 (59%), Gaps = 41/363 (11%)

Query: 17  SEIFFEERFDDG--WRSRWVISDWKRSEGKAGYFKHTAGKWHGDPD-DKGIQTHTDARHY 73
             I+F+E+F DG  W +RWV S  K   GK   F  ++GK++GD + DKG+QT  DAR Y
Sbjct: 5   PAIYFKEQFLDGDAWTNRWVESKHKSDFGK---FVLSSGKFYGDLEKDKGLQTSQDARFY 61

Query: 74  AISAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPD 133
           A+SAK   FSNK +TLVVQ++++ EQ+I+CGGGY+KL  + ++QK   GD+ Y++MFGPD
Sbjct: 62  ALSAKFEPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPSGLDQKDMHGDSEYNIMFGPD 121

Query: 134 ICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGS 193
           ICG   K +HVI +Y+G+N  I K++  + D+ TH YT I+RPD +Y + IDN + +SGS
Sbjct: 122 ICGPGTKKVHVIFNYKGKNVLINKDIRSKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGS 181

Query: 194 MYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDSIPKEIPDPKAKKPDNWD 253
           +  DWD LPP+KIK  +A KP DWD+R  IDDP   KPE                   WD
Sbjct: 182 LEDDWDFLPPKKIKDPDAAKPEDWDERAKIDDPTDSKPED------------------WD 223

Query: 254 EDE-DGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPGIFEDDPDLYVLKPIK 312
           +    G WKP +I NP YKG W    I NP Y                 D ++Y      
Sbjct: 224 KGGSGGEWKPRQIDNPDYKGTWIHPEIDNPEYS---------------PDANIYAYDSFA 268

Query: 313 YVGIEVWQVKAGSVYDNILICDDPAYAKQVVEEVLS-NREIEKEGFEEAEKVRKAREEEE 371
            +G+++WQVK+G+++DN LI +D AYA++   E     +  EK+  ++ ++ ++ + E  
Sbjct: 269 VLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETWGVTKAAEKQMKDKQDEEQRLKLEHH 328

Query: 372 AQR 374
              
Sbjct: 329 HHH 331
>1jhn_A Calnexin; jelly-roll, beta sandwich, chaperone; 2.90A {Canis lupus familiaris} SCOP: b.29.1.12 b.104.1.1 Length = 424 Back     alignment and structure
>3pow_A Calreticulin; legume lectin fold, CNX/CRT family, multi-functional, carboh binding, peptide binding, multi-compartmental, chaperone; 1.55A {Homo sapiens} PDB: 3pos_A 3o0w_A* 3o0v_A* 3o0x_A* Length = 265 Back     alignment and structure
>3pow_A Calreticulin; legume lectin fold, CNX/CRT family, multi-functional, carboh binding, peptide binding, multi-compartmental, chaperone; 1.55A {Homo sapiens} PDB: 3pos_A 3o0w_A* 3o0v_A* 3o0x_A* Length = 265 Back     alignment and structure
>1hhn_A Calreticulin; molecular chaperone; NMR {Rattus norvegicus} SCOP: b.104.1.1 PDB: 1k9c_A 1k91_A Length = 101 Back     alignment and structure
>3ici_C Calnexin, PP90; protein-protein complex, endoplasmic reticulum, glycoprotein isomerase, rotamase, chaperone, lectin, membrane; HET: MES; 1.70A {Canis lupus familiaris} Length = 38 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query415
1jhn_A424 Calnexin; jelly-roll, beta sandwich, chaperone; 2. 100.0
3rg0_A332 Calreticulin; beta-sandwich, chaperone, monoglucos 100.0
3pow_A265 Calreticulin; legume lectin fold, CNX/CRT family, 100.0
1hhn_A101 Calreticulin; molecular chaperone; NMR {Rattus nor 100.0
1jhn_A424 Calnexin; jelly-roll, beta sandwich, chaperone; 2. 100.0
3rg0_A332 Calreticulin; beta-sandwich, chaperone, monoglucos 99.93
1hhn_A101 Calreticulin; molecular chaperone; NMR {Rattus nor 99.93
3ici_C38 Calnexin, PP90; protein-protein complex, endoplasm 99.39
3ici_C38 Calnexin, PP90; protein-protein complex, endoplasm 98.2
3pow_A265 Calreticulin; legume lectin fold, CNX/CRT family, 97.7
>1jhn_A Calnexin; jelly-roll, beta sandwich, chaperone; 2.90A {Canis lupus familiaris} SCOP: b.29.1.12 b.104.1.1 Back     alignment and structure
Probab=100.00  E-value=3e-124  Score=948.27  Aligned_cols=343  Identities=38%  Similarity=0.760  Sum_probs=305.6

Q ss_pred             HHhhccceeeeeecccCCCcccCeeeCCcccCC------CCCCcEEeecCcccCCCCCceeeeCcccchhhhhcCCC-CC
Q 014968           10 LFFQISVSEIFFEERFDDGWRSRWVISDWKRSE------GKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIP-EF   82 (415)
Q Consensus        10 ~~~~~~~~~v~F~E~F~~~w~~rWv~S~~~k~~------~~~G~~~~~~gk~~g~~~d~GL~~~~~ar~yaIS~k~~-~f   82 (415)
                      ..+.++.+++||+|+|+++|.+|||+|+++|++      .+.|+|.+++|+++|+++|+||||+++|||||||++|+ ||
T Consensus        17 y~~p~~~~~~~F~E~F~~~~~~rWv~S~~~k~~~~~~~~~y~G~w~~~~~~~~~~~~DkGL~~~~~ar~yaISa~~~kpf   96 (424)
T 1jhn_A           17 YKAPVPSGEVYFADSFDRGTLSGWILSKAKKDDTDDEIAKYDGKWEVDEMKETKLPGDKGLVLMSRAKHHAISAKLNKPF   96 (424)
T ss_dssp             CCCCCCCSCCSSEECCCSSSCCSCCCCCCC-----------CCEEECCBCTTCSSTTCBCCEEECSSCCCEEEEEEEEEE
T ss_pred             eecCCCCcceeEeeecCCCccCCceeCcccccccccccccCCeEEEEecCccCCCccccceeeccchhHHHHHHhhcCcc
Confidence            334577899999999999999999999998753      24599999999999999999999999999999999995 89


Q ss_pred             CCCCCceEEEEEEeeecccccCCceeEEecc--cccccccCCCCCceeeecCCccCCCCCeEEEEEeeCCCc-------c
Q 014968           83 SNKNRTLVVQYSIRFEQDIECGGGYIKLLSA--YVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQN-------Y  153 (415)
Q Consensus        83 ~~k~k~LVvQYeVk~e~~idCGGaYiKLl~~--~~d~~~f~~~TpY~IMFGPD~Cg~~~~kvH~Il~~~~~~-------~  153 (415)
                      +|++++||||||||||++|+|||||||||+.  +++|++|+++|||+||||||+|| .++||||||||++.+       |
T Consensus        97 ~~~~k~LVvQYeVk~q~~idCGGaYiKLl~~~~~~d~~~f~~~TpY~IMFGPD~CG-~~~kvH~I~~~knp~~g~~~ekh  175 (424)
T 1jhn_A           97 LFDTKPLIVQYEVNFQNGIECGGAYVKLLSKTPELNLDQFHDKTPYTIMFGPDKCG-EDYKLHFIFRHKNPKTGVYEEKH  175 (424)
T ss_dssp             CSSSSCEEEEEEECCTTCCSEEECCEEEEBCCSSCCGGGCCSSCCEEEEEEEEEES-SCCEEEEEEEEECTTTCCEEEEC
T ss_pred             ccCCCCEEEEEEEEecccccccceEEEeecCcccCCHhHcCCCCCceEeccCCccC-CCCeEEEEEecCCCCCCchhhhc
Confidence            9999999999999999999999999999997  48999999999999999999999 799999999998754       6


Q ss_pred             ccccCCc---ccCCCccceeeEEeCCCCceEEEEcceeecCCCCCCCCC--CCCCccccCCCCCCCCCCCCCcccCCCCC
Q 014968          154 PIKKELE---CETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWD--ILPPRKIKAVNAKKPADWDDREYIDDPNA  228 (415)
Q Consensus       154 ~ikk~~~---~~~D~ltHlYTLIl~pd~tyeI~ID~~~~~~Gsl~~Dwd--~~pp~~I~Dp~~~KP~DWdd~~~I~Dp~~  228 (415)
                      +++++++   |++|++||||||||||||||+|+|||+++.+|||++||+  ++||++|+||+++||+|||++++|+||+|
T Consensus       176 ~~~~~~~~~~~~~D~~tHlYTLIl~pdntyei~ID~~~v~~GsL~~D~~Pp~~pp~~I~Dp~~~KP~DWde~~~I~Dp~a  255 (424)
T 1jhn_A          176 AKRPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSIVNSGNLLNDMTPPVNPSREIEDPEDQKPEDWDERPKIPDPDA  255 (424)
T ss_dssp             CCCCSSCCTHHHHSCSCEEEEEEEETTTEEEEEETTEEEEEEC-------CCSSCCCCBCTTCCCCTTCCCCSEEECSSC
T ss_pred             ccCCcccccccccCCCceEEEEEEcCCCcEEEEECCceecccccHHhccccCCCcccccCccccCccccccccccCCccc
Confidence            6666653   568999999999999999999999999999999999999  99999999999999999999999999999


Q ss_pred             CCCCCCCC--------------------CCCCCCCCCCCCCCCCCCCCCCCCC-------------------CCCCCCCC
Q 014968          229 VKPEGYDS--------------------IPKEIPDPKAKKPDNWDEDEDGLWK-------------------PPKIPNPA  269 (415)
Q Consensus       229 ~KPedWd~--------------------~p~~I~dp~a~kP~dWd~~~dG~W~-------------------~p~I~NP~  269 (415)
                      +||+|||+                    +|++|+||+|+||+||++++||+|+                   ||||.||+
T Consensus       256 ~KPeDWde~~p~~I~Dp~A~KPedWdd~ep~~I~DP~a~KPedWd~~~~G~W~~P~i~NP~~~~~~gcG~W~~P~I~NP~  335 (424)
T 1jhn_A          256 VKPDDWNEDAPAKIPDEEATKPDGWLDDEPEYVPDPDAEKPEDWDEDMDGEWEAPQIANPKCESAPGCGVWQRPMIDNPN  335 (424)
T ss_dssp             CCCTTCCSSCCSEEECTTCCCCSSCBSSSCSCCBCTTCCCCTTCCTTTSCCCCCCBCCCGGGTTSSCBSSCCCCEEECTT
T ss_pred             CCccccccCCccccCCccccCCCCccccccccCCCcccCCccccccCCCccccCcccCCchhcccccCCcccCCCCCCcc
Confidence            99999973                    4789999999999999998777666                   57777888


Q ss_pred             CCccCcCCcCCCCCCCCCCCCcccCCCCCcccCCCcccccCceeeeEeeEeecCCceeeeeEecCCHHHHHHHHHHhhcc
Q 014968          270 YKGPWRPKRIKNPNYKGKWKIPYIDNPGIFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPAYAKQVVEEVLSN  349 (415)
Q Consensus       270 ykG~W~p~~I~NP~Ykg~W~~~~I~Np~~y~~d~~~~~~~~i~~iG~ElW~~~~g~~fDNili~dd~~~A~~~~~~t~~~  349 (415)
                      |+|+|+||+|+||+|+|+|+|++|+||+ |++|+++|.|.+|++||||||||++|++|||||||+|+++|++++++||+.
T Consensus       336 ykG~W~pp~I~NP~Ykg~W~p~~I~NP~-y~~d~~p~~~~~i~~iG~ElW~~~~g~~FDNilItdd~~~A~~~~~~t~~~  414 (424)
T 1jhn_A          336 YKGKWKPPMIDNPNYQGIWKPRKIPNPD-FFEDLEPFKMTPFSAIGLELWSMTSDIFFDNFIVCGDRRVVDDWANDGWGL  414 (424)
T ss_dssp             CCCSCCCCEEECTTCCCSCCCCBCCCTT-CCCCCCTTCCCCEEEEEECCCCSSSCCBCEEEEEESSSHHHHHHHHHTTTC
T ss_pred             ccCcccCCccCCCcccccccccccCCcc-ccCCCcccccCcccEEEEEeEEeeCCcEEeeEEEcCCHHHHHHHHHhhhhh
Confidence            8899999999999999999999999999 999999999999999999999999999999999999999999999999998


Q ss_pred             -hhhhh
Q 014968          350 -REIEK  354 (415)
Q Consensus       350 -~~~E~  354 (415)
                       +.+|.
T Consensus       415 k~~~e~  420 (424)
T 1jhn_A          415 KKAADG  420 (424)
T ss_dssp             ------
T ss_pred             hhhhhh
Confidence             66653
>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins binding, carbohydrate binding, calcium binding, endoplasmic reticulu; 2.57A {Mus musculus} Back     alignment and structure
>3pow_A Calreticulin; legume lectin fold, CNX/CRT family, multi-functional, carboh binding, peptide binding, multi-compartmental, chaperone; 1.55A {Homo sapiens} PDB: 3pos_A 3o0w_A* 3o0v_A* 3o0x_A* Back     alignment and structure
>1hhn_A Calreticulin; molecular chaperone; NMR {Rattus norvegicus} SCOP: b.104.1.1 PDB: 1k9c_A 1k91_A Back     alignment and structure
>1jhn_A Calnexin; jelly-roll, beta sandwich, chaperone; 2.90A {Canis lupus familiaris} SCOP: b.29.1.12 b.104.1.1 Back     alignment and structure
>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins binding, carbohydrate binding, calcium binding, endoplasmic reticulu; 2.57A {Mus musculus} Back     alignment and structure
>1hhn_A Calreticulin; molecular chaperone; NMR {Rattus norvegicus} SCOP: b.104.1.1 PDB: 1k9c_A 1k91_A Back     alignment and structure
>3ici_C Calnexin, PP90; protein-protein complex, endoplasmic reticulum, glycoprotein isomerase, rotamase, chaperone, lectin, membrane; HET: MES; 1.70A {Canis lupus familiaris} Back     alignment and structure
>3ici_C Calnexin, PP90; protein-protein complex, endoplasmic reticulum, glycoprotein isomerase, rotamase, chaperone, lectin, membrane; HET: MES; 1.70A {Canis lupus familiaris} Back     alignment and structure
>3pow_A Calreticulin; legume lectin fold, CNX/CRT family, multi-functional, carboh binding, peptide binding, multi-compartmental, chaperone; 1.55A {Homo sapiens} PDB: 3pos_A 3o0w_A* 3o0v_A* 3o0x_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 415
d1jhna4249 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Cani 2e-79
d1jhna3142 b.104.1.1 (A:270-411) Calnexin {Dog (Canis familia 6e-33
d1k9ca_74 b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicu 3e-30
d1k91a_37 b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicu 6e-14
>d1jhna4 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Length = 249 Back     information, alignment and structure

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Calnexin/calreticulin
domain: Calnexin
species: Dog (Canis familiaris) [TaxId: 9615]

 Score =  243 bits (621), Expect = 2e-79
 Identities = 80/262 (30%), Positives = 121/262 (46%), Gaps = 39/262 (14%)

Query: 17  SEIFFEERFDDGWRSRWVISDWKRSEGK------AGYFKHTAGKWHGDPDDKGIQTHTDA 70
            E++F + FD G  S W++S  K+ +         G ++    K    P DKG+   + A
Sbjct: 8   GEVYFADSFDRGTLSGWILSKAKKDDTDDEIAKYDGKWEVDEMKETKLPGDKGLVLMSRA 67

Query: 71  RHYAISAKIPE-FSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAY--VNQKKFGGDAPYS 127
           +H+AISAK+ + F    + L+VQY + F+  IECGG Y+KLLS    +N  +F    PY+
Sbjct: 68  KHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLSKTPELNLDQFHDKTPYT 127

Query: 128 LMFGPDICGTQKKHLHVILSYQGQNYPIKKELECE----------TDKLTHFYTFILRPD 177
           +MFGPD CG   K LH I  ++     + +E   +          TDK TH YT IL PD
Sbjct: 128 IMFGPDKCGEDYK-LHFIFRHKNPKTGVYEEKHAKRPDADLKTYFTDKKTHLYTLILNPD 186

Query: 178 ASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDSI 237
            S+ IL+D    +SG++   + + P   I        +D     +I   +          
Sbjct: 187 NSFEILVDQSIVNSGNL-EPFKMTPFSAIGLELWSMTSDIFFDNFIVCGD---------- 235

Query: 238 PKEIPDPKAKKPDNWDEDEDGL 259
                    +  D+W  D  GL
Sbjct: 236 --------RRVVDDWANDGWGL 249
>d1jhna3 b.104.1.1 (A:270-411) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Length = 142 Back     information, alignment and structure
>d1k9ca_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 74 Back     information, alignment and structure
>d1k91a_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 37 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query415
d1jhna4249 Calnexin {Dog (Canis familiaris) [TaxId: 9615]} 100.0
d1jhna3142 Calnexin {Dog (Canis familiaris) [TaxId: 9615]} 100.0
d1k9ca_74 Calreticulin {Rat (Rattus norvegicus) [TaxId: 1011 99.96
d1jhna3142 Calnexin {Dog (Canis familiaris) [TaxId: 9615]} 99.9
d1k9ca_74 Calreticulin {Rat (Rattus norvegicus) [TaxId: 1011 99.74
d1k91a_37 Calreticulin {Rat (Rattus norvegicus) [TaxId: 1011 99.55
d1k91a_37 Calreticulin {Rat (Rattus norvegicus) [TaxId: 1011 98.32
d1jhna4249 Calnexin {Dog (Canis familiaris) [TaxId: 9615]} 98.24
>d1jhna4 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure
class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Calnexin/calreticulin
domain: Calnexin
species: Dog (Canis familiaris) [TaxId: 9615]

Probab=100.00  E-value=1.2e-77  Score=574.78  Aligned_cols=221  Identities=34%  Similarity=0.597  Sum_probs=191.0

Q ss_pred             hccceeeeeecccCCCcccCeeeCCcccCCCCCCcEEeecCccc-------CCCCCceeeeCcccchhhhhcCC-CCCCC
Q 014968           13 QISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWH-------GDPDDKGIQTHTDARHYAISAKI-PEFSN   84 (415)
Q Consensus        13 ~~~~~~v~F~E~F~~~w~~rWv~S~~~k~~~~~G~~~~~~gk~~-------g~~~d~GL~~~~~ar~yaIS~k~-~~f~~   84 (415)
                      .+++++|||+|+|+++|.+||+.|+++++. ..|++..++|+|+       +.++|+||||+++|||||||++| +||++
T Consensus         4 p~~~~~v~F~E~Fd~~~~~rWi~S~akk~~-~~~~~~~y~G~W~~~~~~~~~~~~DkGL~~~~~ak~yaIs~~l~~pf~~   82 (249)
T d1jhna4           4 PVPSGEVYFADSFDRGTLSGWILSKAKKDD-TDDEIAKYDGKWEVDEMKETKLPGDKGLVLMSRAKHHAISAKLNKPFLF   82 (249)
T ss_dssp             CCCCSCCSSEECCCSSSCCSCCCCCCC------------CCEEECCBCTTCSSTTCBCCEEECSSCCCEEEEEEEEEECS
T ss_pred             CCCCcceeEEeccCCcccCCCEECcccccC-cccceeeccceeeeecccccCCCCcccceecccchhhhhhccCCCCccc
Confidence            456799999999999999999999998754 3455666666665       45679999999999999999999 68999


Q ss_pred             CCCceEEEEEEeeecccccCCceeEEecc--cccccccCCCCCceeeecCCccCCCCCeEEEEEeeCCCcc------ccc
Q 014968           85 KNRTLVVQYSIRFEQDIECGGGYIKLLSA--YVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNY------PIK  156 (415)
Q Consensus        85 k~k~LVvQYeVk~e~~idCGGaYiKLl~~--~~d~~~f~~~TpY~IMFGPD~Cg~~~~kvH~Il~~~~~~~------~ik  156 (415)
                      ++|+||||||||+|++|+|||||||||+.  ++++++|+++|||+||||||+|| .++||||||||++.+.      ..+
T Consensus        83 ~~k~LVvQYeVk~q~~~~CGGaYiKLl~~~~~~~~~~f~~~TpY~IMFGPD~CG-~~~kvHfIf~~~np~~~~~eek~~~  161 (249)
T d1jhna4          83 DTKPLIVQYEVNFQNGIECGGAYVKLLSKTPELNLDQFHDKTPYTIMFGPDKCG-EDYKLHFIFRHKNPKTGVYEEKHAK  161 (249)
T ss_dssp             SSSCEEEEEEECCTTCCSEEECCEEEEBCCSSCCGGGCCSSCCEEEEEEEEEES-SCCEEEEEEEEECTTTCCEEEECCC
T ss_pred             CCCCEEEEEEeeeccCccccceEEEeecCcccCCHhHcCCCCCceEEeCCcccC-CCCEEEEEEEcCCCCCccceeeeec
Confidence            99999999999999999999999999987  47899999999999999999999 7899999999976432      223


Q ss_pred             cC----CcccCCCccceeeEEeCCCCceEEEEcceeecCCCCCCCCCCCCCccccCCCCCCCCCCCCCcccCCCCCCCCC
Q 014968          157 KE----LECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPE  232 (415)
Q Consensus       157 k~----~~~~~D~ltHlYTLIl~pd~tyeI~ID~~~~~~Gsl~~Dwd~~pp~~I~Dp~~~KP~DWdd~~~I~Dp~~~KPe  232 (415)
                      .+    +.+.+|++||||||||+|||||||+|||+++.+|||. +|.+.||+.|.||.++||+||+++++|+||+++||+
T Consensus       162 ~p~~~~~~~~~D~~tHLYTLIi~pdntfeI~iDg~~~~~G~le-~~~~~p~~~i~dp~~~KP~DW~d~~~I~dp~~~kpe  240 (249)
T d1jhna4         162 RPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSIVNSGNLE-PFKMTPFSAIGLELWSMTSDIFFDNFIVCGDRRVVD  240 (249)
T ss_dssp             CCSSCCTHHHHSCSCEEEEEEEETTTEEEEEETTEEEEEECCC-TTCCCCEEEEEECCCCSSSCCBCEEEEEESSSHHHH
T ss_pred             CCCccccccCcCCCcccceEEECCCCeEEEEeCCccccCCCcC-cccCCCcccCCCcccCCCCCccccccccCCCcCChh
Confidence            33    2356899999999999999999999999999999985 688999999999999999999999999999999999


Q ss_pred             CCCC
Q 014968          233 GYDS  236 (415)
Q Consensus       233 dWd~  236 (415)
                      |||+
T Consensus       241 dWde  244 (249)
T d1jhna4         241 DWAN  244 (249)
T ss_dssp             HHHH
T ss_pred             hhhh
Confidence            9986
>d1jhna3 b.104.1.1 (A:270-411) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure
>d1k9ca_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1jhna3 b.104.1.1 (A:270-411) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure
>d1k9ca_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1k91a_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1k91a_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1jhna4 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure