Citrus Sinensis ID: 014970

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-----
MLQCIFLLADNGAVILEKQLTGHRVDRSICDWFWDHVISQGDSFKSMPVIASPTHYIFQIVRAGITFLACTQVEMPPLMGIEFLCRVADILSDYLGELNEDLIKDNFVIVYELLDEMIDNGFPLTTEPNILREMIAPPNIVSKMLSVVTGNSSNVSDILPGATASCVPWRPTDVKYANNEVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANPSILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVKKLKSTPIYVKPQLTSDAGTCRISVMVGIRNDPGKTIDSIILQFQLPPCILSADLTSNHGTVNVLSNKICTWSIGRIPKDKAPSLSGTMVLETGLETLRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKGFRAVTRAGEYEVRS
cEEEEEEEcccccEEEEEccccccccccHHHHHHHHHHccccccccccEEEcccEEEEEEEEccEEEEEEEcccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccEEEcccccccccccccccccccccEEcccccccccccccccccccccccccccccccEEEEEEEEEEEEEEcccccEEEEEEEEEEEEEEEcccccccccccccccccccEEEcccccccccccccEEEEEcccccEEEEEEEEcccccccEEEEEEEEEcccEEEEEEEEEEcccccccccEEEEEEEccccccEEEEEEccEEEEEccccEEEEEEcccccccccEEEEEEEEcccccccccccEEEEEEEEcEEEcccEEEEEEEEEcccccccccEEEEEEcccEEEcc
cccEEEEEcccccEEEEEccccccccHHHHHHHHHHHHHcccccccccEEEcccEEEEEEEEccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHEHHHHHHHHHHHcccccccHHHHHHHHccccccEEEEEcccccccccccccccccHcccccccccccEEcccEEEEEEHHHEEEEEcccccEEEEEEEEEEEEEEEEccccccEEcccccEEEccccEcccEEEcccccccEEEEccccccEEEEEEEEcccccccEEEEEEEEEEccccEEEEEEEEcccccccccEEEEEEEccccccccEEEEcEEEEEEccccEEEEEEEEcccccEEEEEEEEEcccccccccccccEEEEEEEEEEEEccEEEEEEEEEccccccccEEEEEEccccEEEEc
MLQCIFLLADNGAVILEKqltghrvdrsiCDWFWdhvisqgdsfksmpviasptHYIFQIVRAGITFLactqvempplmgIEFLCRVADILSDYLGELNEDLIKDNFVIVYELLDEMidngfplttepnilremiappniVSKMLSVVtgnssnvsdilpgatascvpwrptdvkyanneVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNcllsglpdltlsfanpsilhdvrfhpcvrfrpweshqilsfvppdgqfKLMSYRVKklkstpiyvkpqltsdagtcrISVMVGirndpgktiDSIILQfqlppcilsadltsnhgtvnvlsnkictwsigripkdkapslsgtmVLETGLetlrvfptFQVEFRIMGVAlsglqidkldlqnvpnrlYKGFRAvtrageyevrs
MLQCIFLLADNGAVILEKQLTGHRVDRSICDWFWDHVISQGDSFKSMPVIASPTHYIFQIVRAGITFLACTQVEMPPLMGIEFLCRVADILSDYLGELNEDLIKDNFVIVYELLDEMIDNGFPLTTEPNILREMIAPPNIVSKMLSVVTGNSSNVSDILPGATASCVPWRPTDVKYANNEVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANPSILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVKKLkstpiyvkpqltsdagtcrISVMVGIRNDPGKTIDSIILQFQLPPCILSADLTSNHGTVNVLSNKICTWSIGRIPKDKAPSLSGTMVLETGLETLRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKgfravtrageyevrs
MLQCIFLLADNGAVILEKQLTGHRVDRSICDWFWDHVISQGDSFKSMPVIASPTHYIFQIVRAGITFLACTQVEMPPLMGIEFLCRVADILSDYLGELNEDLIKDNFVIVYELLDEMIDNGFPLTTEPNILREMIAPPNIVSKMLSVVTGNSSNVSDILPGATASCVPWRPTDVKYANNEVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANPSILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVKKLKSTPIYVKPQLTSDAGTCRISVMVGIRNDPGKTIDSIILQFQLPPCILSADLTSNHGTVNVLSNKICTWSIGRIPKDKAPSLSGTMVLETGLETLRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKGFRAVTRAGEYEVRS
**QCIFLLADNGAVILEKQLTGHRVDRSICDWFWDHVISQGDSFKSMPVIASPTHYIFQIVRAGITFLACTQVEMPPLMGIEFLCRVADILSDYLGELNEDLIKDNFVIVYELLDEMIDNGFPLTTEPNILREMIAPPNIVSKMLSVVTGNSSNVSDILPGATASCVPWRPTDVKYANNEVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANPSILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVKKLKSTPIYVKPQLTSDAGTCRISVMVGIRNDPGKTIDSIILQFQLPPCILSADLTSNHGTVNVLSNKICTWSIGRIPKDKAPSLSGTMVLETGLETLRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKGFRAVTRA*******
MLQCIFLLADNGAVILEKQLTGHRVDRSICDWFWDHVISQG**FKSMPVIASPTHYIFQIVRAGITFLACTQVEMPPLMGIEFLCRVADILSDYLGELNEDLIKDNFVIVYELLDEMIDNGFPLTTEPNILREMIAPPNIVSK******************************VKYANNEVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANPSILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVKKLKSTPIYVKPQLTSDAGTCRISVMVGIRNDPGKTIDSIILQFQLPPCILSADLTSNHGTVNVLSNKICTWSIGRIPKDKAPSLSGTM***********FPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKGFRAVTRAGEYEVRS
MLQCIFLLADNGAVILEKQLTGHRVDRSICDWFWDHVISQGDSFKSMPVIASPTHYIFQIVRAGITFLACTQVEMPPLMGIEFLCRVADILSDYLGELNEDLIKDNFVIVYELLDEMIDNGFPLTTEPNILREMIAPPNIVSKMLSVVTGNSSNVSDILPGATASCVPWRPTDVKYANNEVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANPSILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVKKLKSTPIYVKPQLTSDAGTCRISVMVGIRNDPGKTIDSIILQFQLPPCILSADLTSNHGTVNVLSNKICTWSIGRIPKDKAPSLSGTMVLETGLETLRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKGFRAVTRAGEYEVRS
MLQCIFLLADNGAVILEKQLTGHRVDRSICDWFWDHVISQGDSFKSMPVIASPTHYIFQIVRAGITFLACTQVEMPPLMGIEFLCRVADILSDYLGELNEDLIKDNFVIVYELLDEMIDNGFPLTTEPNILREMIAPPNIVSKMLSV********************PWRPTDVKYANNEVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANPSILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVKKLKSTPIYVKPQLTSDAGTCRISVMVGIRNDPGKTIDSIILQFQLPPCILSADLTSNHGTVNVLSNKICTWSIGRIPKDKAPSLSGTMVLETGLETLRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKGFRAVTRAGEYEVRS
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MLQCIFLLADNGAVILEKQLTGHRVDRSICDWFWDHVISQGDSFKSMPVIASPTHYIFQIVRAGITFLACTQVEMPPLMGIEFLCRVADILSDYLGELNEDLIKDNFVIVYELLDEMIDNGFPLTTEPNILREMIAPPNIVSKMLSVVTGNSSNVSDILPGATASCVPWRPTDVKYANNEVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANPSILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVKKLKSTPIYVKPQLTSDAGTCRISVMVGIRNDPGKTIDSIILQFQLPPCILSADLTSNHGTVNVLSNKICTWSIGRIPKDKAPSLSGTMVLETGLETLRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKGFRAVTRAGEYEVRS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query415 2.2.26 [Sep-21-2011]
Q5R478418 AP-3 complex subunit mu-1 yes no 0.995 0.988 0.440 1e-101
Q9Y2T2418 AP-3 complex subunit mu-1 yes no 0.995 0.988 0.440 1e-101
Q24K11418 AP-3 complex subunit mu-1 yes no 0.995 0.988 0.440 1e-101
Q9JKC8418 AP-3 complex subunit mu-1 yes no 0.995 0.988 0.438 1e-101
Q5ZMP7418 AP-3 complex subunit mu-1 yes no 0.995 0.988 0.428 1e-101
P53676418 AP-3 complex subunit mu-1 yes no 0.995 0.988 0.433 1e-100
P47795418 AP-1 complex subunit mu O N/A no 0.995 0.988 0.442 2e-99
P53678418 AP-3 complex subunit mu-2 no no 0.995 0.988 0.447 1e-96
Q8R2R9418 AP-3 complex subunit mu-2 no no 0.995 0.988 0.442 1e-96
P53677418 AP-3 complex subunit mu-2 no no 0.995 0.988 0.438 3e-96
>sp|Q5R478|AP3M1_PONAB AP-3 complex subunit mu-1 OS=Pongo abelii GN=AP3M1 PE=2 SV=1 Back     alignment and function desciption
 Score =  370 bits (949), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/420 (44%), Positives = 271/420 (64%), Gaps = 7/420 (1%)

Query: 1   MLQCIFLLADNGAVILEKQLTGHRVDRSICDWFWDHVISQGDSFKSMPVIASPTHYIFQI 60
           M+  +FL+  +G + LEK      V +S+CD+F++      D     PVI++P HY+  I
Sbjct: 1   MIHSLFLINCSGDIFLEKHWKS-VVSQSVCDYFFEAQEKAADVENVPPVISTPHHYLISI 59

Query: 61  VRAGITFLACTQVEMPPLMGIEFLCRVADILSDYLGELNEDLIKDNFVIVYELLDEMIDN 120
            R  + F++  Q E+PPL  IEFL RVAD   DY GE +E  IKDN VIVYELL+EM+DN
Sbjct: 60  YRDKLFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEMLDN 119

Query: 121 GFPLTTEPNILREMIAPPNIVSKMLSVVTGNSSNVSDILPGATASCVPWRPTDVKYANNE 180
           GFPL TE NIL+E+I PP I+  +++ +TG SSNV D LP    S +PWR   VKY NNE
Sbjct: 120 GFPLATESNILKELIKPPTILRSVVNSITG-SSNVGDTLPTGQLSNIPWRRAGVKYTNNE 178

Query: 181 VYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANPSILHDVRFHPCVR 240
            Y D+VEE+DAII++ G  V  EI G +     LSG+PDL+LSF NP +L DV FHPC+R
Sbjct: 179 AYFDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDLSLSFMNPRLLDDVSFHPCIR 238

Query: 241 FRPWESHQILSFVPPDGQFKLMSYRV--KKLKSTPIYVKPQLT-SDAGTC-RISVMVGIR 296
           F+ WES ++LSF+PPDG F+L+SYRV  + L + P+YVK  ++  +  +C R  + +G +
Sbjct: 239 FKRWESERVLSFIPPDGNFRLISYRVSSQNLVAIPVYVKHSISFKENSSCGRFDITIGPK 298

Query: 297 NDPGKTIDSIILQFQLPPCILSADLTSNHGTVNVLS-NKICTWSIGRIPKDKAPSLSGTM 355
            + GKTI+ I +   +P  +L+ +LT   G+       K+ TW +G+I   K PSL G +
Sbjct: 299 QNMGKTIEGITVTVHMPKVVLNMNLTPTQGSYTFDPVTKVLTWDVGKITPQKLPSLKGLV 358

Query: 356 VLETGLETLRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKGFRAVTRAGEYEVRS 415
            L++G       P+  ++F+I  +A+SGL++++LD+     + +KG + VT+AG+++VR+
Sbjct: 359 NLQSGAPKPEENPSLNIQFKIQQLAISGLKVNRLDMYGEKYKPFKGVKYVTKAGKFQVRT 418
Part of the AP-3 complex, an adaptor-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to lysosomes.
Pongo abelii (taxid: 9601)
>sp|Q9Y2T2|AP3M1_HUMAN AP-3 complex subunit mu-1 OS=Homo sapiens GN=AP3M1 PE=1 SV=1 Back     alignment and function description
>sp|Q24K11|AP3M1_BOVIN AP-3 complex subunit mu-1 OS=Bos taurus GN=AP3M1 PE=2 SV=1 Back     alignment and function description
>sp|Q9JKC8|AP3M1_MOUSE AP-3 complex subunit mu-1 OS=Mus musculus GN=Ap3m1 PE=1 SV=1 Back     alignment and function description
>sp|Q5ZMP7|AP3M1_CHICK AP-3 complex subunit mu-1 OS=Gallus gallus GN=AP3M1 PE=2 SV=1 Back     alignment and function description
>sp|P53676|AP3M1_RAT AP-3 complex subunit mu-1 OS=Rattus norvegicus GN=Ap3m1 PE=2 SV=1 Back     alignment and function description
>sp|P47795|AP1M_DIPOM AP-1 complex subunit mu OS=Diplobatis ommata PE=2 SV=1 Back     alignment and function description
>sp|P53678|AP3M2_RAT AP-3 complex subunit mu-2 OS=Rattus norvegicus GN=Ap3m2 PE=2 SV=1 Back     alignment and function description
>sp|Q8R2R9|AP3M2_MOUSE AP-3 complex subunit mu-2 OS=Mus musculus GN=Ap3m2 PE=2 SV=1 Back     alignment and function description
>sp|P53677|AP3M2_HUMAN AP-3 complex subunit mu-2 OS=Homo sapiens GN=AP3M2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query415
255542950415 clathrin coat adaptor ap3 medium chain, 1.0 1.0 0.867 0.0
288551435415 clathrin-associated adaptor complexes me 1.0 1.0 0.862 0.0
224124446415 predicted protein [Populus trichocarpa] 1.0 1.0 0.845 0.0
225450531415 PREDICTED: AP-3 complex subunit mu-1 [Vi 1.0 1.0 0.845 0.0
224122880415 predicted protein [Populus trichocarpa] 1.0 1.0 0.843 0.0
356505759415 PREDICTED: AP-3 complex subunit mu-1-lik 1.0 1.0 0.838 0.0
363808242415 uncharacterized protein LOC100799191 [Gl 1.0 1.0 0.833 0.0
449443514415 PREDICTED: AP-3 complex subunit mu-1-lik 1.0 1.0 0.821 0.0
356535002415 PREDICTED: AP-3 complex subunit mu-1-lik 1.0 1.0 0.826 0.0
449520597415 PREDICTED: AP-3 complex subunit mu-1-lik 1.0 1.0 0.819 0.0
>gi|255542950|ref|XP_002512538.1| clathrin coat adaptor ap3 medium chain, putative [Ricinus communis] gi|223548499|gb|EEF49990.1| clathrin coat adaptor ap3 medium chain, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  744 bits (1922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/415 (86%), Positives = 380/415 (91%)

Query: 1   MLQCIFLLADNGAVILEKQLTGHRVDRSICDWFWDHVISQGDSFKSMPVIASPTHYIFQI 60
           MLQCIFLL+D G VILEKQLTGHRVDRSICDWFW+  ISQ DSFK   VIASPTHY+FQI
Sbjct: 1   MLQCIFLLSDCGEVILEKQLTGHRVDRSICDWFWNQAISQDDSFKQQSVIASPTHYLFQI 60

Query: 61  VRAGITFLACTQVEMPPLMGIEFLCRVADILSDYLGELNEDLIKDNFVIVYELLDEMIDN 120
           VR GITFLACTQVEMPPLM IEFLCRVA+ILSDYL  LNEDLIKDNFVIVYELLDEMIDN
Sbjct: 61  VREGITFLACTQVEMPPLMAIEFLCRVANILSDYLEGLNEDLIKDNFVIVYELLDEMIDN 120

Query: 121 GFPLTTEPNILREMIAPPNIVSKMLSVVTGNSSNVSDILPGATASCVPWRPTDVKYANNE 180
           GFPLTTEPNILREMIAPPNIVSKMLSVVTGNSSNVSD LP AT+SCVPWR TDVKYANNE
Sbjct: 121 GFPLTTEPNILREMIAPPNIVSKMLSVVTGNSSNVSDTLPNATSSCVPWRTTDVKYANNE 180

Query: 181 VYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANPSILHDVRFHPCVR 240
           VYVDLVEEMDAIINRDGVL+KCEIYGE+QVN  ++G+PDLTLSF NPSIL DVRFHPCVR
Sbjct: 181 VYVDLVEEMDAIINRDGVLMKCEIYGELQVNSHITGVPDLTLSFTNPSILDDVRFHPCVR 240

Query: 241 FRPWESHQILSFVPPDGQFKLMSYRVKKLKSTPIYVKPQLTSDAGTCRISVMVGIRNDPG 300
           FRPWESHQILSFVPPDG FKLMSYRVKKLK+ PIYVKPQLTSDAGTCRI++MVGI+NDPG
Sbjct: 241 FRPWESHQILSFVPPDGLFKLMSYRVKKLKTVPIYVKPQLTSDAGTCRINLMVGIKNDPG 300

Query: 301 KTIDSIILQFQLPPCILSADLTSNHGTVNVLSNKICTWSIGRIPKDKAPSLSGTMVLETG 360
           K IDSI +QF LPPCILSADLTSNHG VNVLSNK+C WSI RIPKDK PSLSGT+VLETG
Sbjct: 301 KMIDSINVQFHLPPCILSADLTSNHGVVNVLSNKMCVWSIDRIPKDKTPSLSGTLVLETG 360

Query: 361 LETLRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKGFRAVTRAGEYEVRS 415
           LE L VFP FQ+ FRI GVALSGLQIDKLDL+ VPNRLYKGFRA+TRAG YEVRS
Sbjct: 361 LERLHVFPIFQLSFRIQGVALSGLQIDKLDLKVVPNRLYKGFRALTRAGLYEVRS 415

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|288551435|gb|ADC53238.1| clathrin-associated adaptor complexes medium subunit [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|224124446|ref|XP_002330025.1| predicted protein [Populus trichocarpa] gi|222871450|gb|EEF08581.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225450531|ref|XP_002281428.1| PREDICTED: AP-3 complex subunit mu-1 [Vitis vinifera] gi|296089804|emb|CBI39623.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224122880|ref|XP_002318939.1| predicted protein [Populus trichocarpa] gi|222857315|gb|EEE94862.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356505759|ref|XP_003521657.1| PREDICTED: AP-3 complex subunit mu-1-like [Glycine max] Back     alignment and taxonomy information
>gi|363808242|ref|NP_001242747.1| uncharacterized protein LOC100799191 [Glycine max] gi|255641304|gb|ACU20929.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|449443514|ref|XP_004139522.1| PREDICTED: AP-3 complex subunit mu-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356535002|ref|XP_003536038.1| PREDICTED: AP-3 complex subunit mu-1-like [Glycine max] Back     alignment and taxonomy information
>gi|449520597|ref|XP_004167320.1| PREDICTED: AP-3 complex subunit mu-1-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query415
TAIR|locus:2027564415 ZIP4 "AT1G56590" [Arabidopsis 0.997 0.997 0.809 8.8e-189
UNIPROTKB|F2Z4I2418 AP3M1 "AP-3 complex subunit mu 0.995 0.988 0.440 2.3e-94
UNIPROTKB|Q9Y2T2418 AP3M1 "AP-3 complex subunit mu 0.995 0.988 0.440 2.3e-94
UNIPROTKB|Q5R478418 AP3M1 "AP-3 complex subunit mu 0.995 0.988 0.440 2.3e-94
RGD|70969418 Ap3m2 "adaptor-related protein 0.995 0.988 0.447 2.3e-94
UNIPROTKB|E1C4U4418 AP3M2 "Uncharacterized protein 0.992 0.985 0.437 3e-94
UNIPROTKB|F1SU34418 AP3M1 "Uncharacterized protein 0.995 0.988 0.440 3e-94
MGI|MGI:1929214418 Ap3m2 "adaptor-related protein 0.995 0.988 0.445 3e-94
UNIPROTKB|Q24K11418 AP3M1 "AP-3 complex subunit mu 0.995 0.988 0.440 6.1e-94
UNIPROTKB|P53677418 AP3M2 "AP-3 complex subunit mu 0.995 0.988 0.440 6.1e-94
TAIR|locus:2027564 ZIP4 "AT1G56590" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1830 (649.3 bits), Expect = 8.8e-189, P = 8.8e-189
 Identities = 335/414 (80%), Positives = 380/414 (91%)

Query:     1 MLQCIFLLADNGAVILEKQLTGHRVDRSICDWFWDHVISQGDSFKSMPVIASPTHYIFQI 60
             MLQCIFL++D+G V+LEKQLTGHRVDRSIC WFWD  ISQGDSFK++PVIASPTHY+FQI
Sbjct:     1 MLQCIFLISDSGEVMLEKQLTGHRVDRSICAWFWDQYISQGDSFKALPVIASPTHYLFQI 60

Query:    61 VRAGITFLACTQVEMPPLMGIEFLCRVADILSDYLGELNEDLIKDNFVIVYELLDEMIDN 120
             VR GITFLAC+QVEMPPLM IEFLCRVAD+LS+YLG LNEDLIKDNF+IVYELLDEMIDN
Sbjct:    61 VRDGITFLACSQVEMPPLMAIEFLCRVADVLSEYLGGLNEDLIKDNFIIVYELLDEMIDN 120

Query:   121 GFPLTTEPNILREMIAPPNIVSKMLSVVTGNSSNVSDILPGATASCVPWRPTDVKYANNE 180
             GFPLTTEP+IL+EMIAPPN+VSKMLSVVTGN+SNVSD LP    SCVPWRPTD KY++NE
Sbjct:   121 GFPLTTEPSILKEMIAPPNLVSKMLSVVTGNASNVSDTLPSGAGSCVPWRPTDPKYSSNE 180

Query:   181 VYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANPSILHDVRFHPCVR 240
             VYVDLVEEMDAI+NRDG LVKCEIYGEVQ+N  L+G PDLTLSFANPSIL D+RFHPCVR
Sbjct:   181 VYVDLVEEMDAIVNRDGELVKCEIYGEVQMNSQLTGFPDLTLSFANPSILEDMRFHPCVR 240

Query:   241 FRPWESHQILSFVPPDGQFKLMSYRVKKLKSTPIYVKPQLTSDAGTCRISVMVGIRNDPG 300
             +RPWESHQ+LSFVPPDG+FKLMSYRVKKLK+TP+YVKPQ+TSD+GTCRISV+VGIR+DPG
Sbjct:   241 YRPWESHQVLSFVPPDGEFKLMSYRVKKLKNTPVYVKPQITSDSGTCRISVLVGIRSDPG 300

Query:   301 KTIDSIILQFQLPPCILSADLTSNHGTVNVLSNKICTWSIGRIPKDKAPSLSGTMVLETG 360
             KTI+SI L FQLP C+ SADL+SNHGTV +LSNK CTW+IGRIPKDK P LSGT+ LE G
Sbjct:   301 KTIESITLSFQLPHCVSSADLSSNHGTVTILSNKTCTWTIGRIPKDKTPCLSGTLALEPG 360

Query:   361 LETLRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKGFRAVTRAGEYEVR 414
             LE L VFPTF++ F+IMG+ALSGL+I+KLDLQ +P RLYKGFRA TRAGE++VR
Sbjct:   361 LERLHVFPTFKLGFKIMGIALSGLRIEKLDLQTIPPRLYKGFRAQTRAGEFDVR 414
GO:0005622 "intracellular" evidence=IEA
GO:0006810 "transport" evidence=IEA
GO:0006886 "intracellular protein transport" evidence=IEA;ISS
GO:0016192 "vesicle-mediated transport" evidence=IEA
GO:0030125 "clathrin vesicle coat" evidence=ISS
GO:0006623 "protein targeting to vacuole" evidence=IGI
GO:0009630 "gravitropism" evidence=IMP
GO:0030244 "cellulose biosynthetic process" evidence=RCA
GO:0048193 "Golgi vesicle transport" evidence=RCA
UNIPROTKB|F2Z4I2 AP3M1 "AP-3 complex subunit mu-1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y2T2 AP3M1 "AP-3 complex subunit mu-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5R478 AP3M1 "AP-3 complex subunit mu-1" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
RGD|70969 Ap3m2 "adaptor-related protein complex 3, mu 2 subunit" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1C4U4 AP3M2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1SU34 AP3M1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1929214 Ap3m2 "adaptor-related protein complex 3, mu 2 subunit" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q24K11 AP3M1 "AP-3 complex subunit mu-1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P53677 AP3M2 "AP-3 complex subunit mu-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q24K11AP3M1_BOVINNo assigned EC number0.44040.99510.9880yesno
Q5R478AP3M1_PONABNo assigned EC number0.44040.99510.9880yesno
Q9JKC8AP3M1_MOUSENo assigned EC number0.43800.99510.9880yesno
Q9Y2T2AP3M1_HUMANNo assigned EC number0.44040.99510.9880yesno
P53676AP3M1_RATNo assigned EC number0.43330.99510.9880yesno
Q9GPF1AP3M_DICDINo assigned EC number0.42450.99270.9786yesno
Q5ZMP7AP3M1_CHICKNo assigned EC number0.42850.99510.9880yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_1310031
hypothetical protein (415 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query415
cd09252248 cd09252, AP-3_Mu3_Cterm, C-terminal domain of medi 1e-111
cd09261254 cd09261, AP-3_Mu3B_Cterm, C-terminal domain of med 2e-73
cd09260254 cd09260, AP-3_Mu3A_Cterm, C-terminal domain of med 6e-69
pfam00928228 pfam00928, Adap_comp_sub, Adaptor complexes medium 2e-63
cd07954239 cd07954, AP_MHD_Cterm, C-terminal domain of adapto 3e-45
cd09250268 cd09250, AP-1_Mu1_Cterm, C-terminal domain of medi 1e-35
cd09251263 cd09251, AP-2_Mu2_Cterm, C-terminal domain of medi 2e-30
cd09258270 cd09258, AP-1_Mu1A_Cterm, C-terminal domain of med 7e-30
cd09253271 cd09253, AP-4_Mu4_Cterm, C-terminal domain of medi 3e-29
cd09259264 cd09259, AP-1_Mu1B_Cterm, C-terminal domain of med 2e-25
cd09256271 cd09256, AP_MuD_MHD, Mu-homology domain (MHD) of a 9e-17
cd09255308 cd09255, AP-like_stonins_MHD, Mu homology domain ( 1e-11
cd09263314 cd09263, AP_stonin-2_MHD, Mu homology domain (MHD) 2e-05
cd09257246 cd09257, AP_muniscins_like_MHD, Mu-homology domain 5e-04
cd09262309 cd09262, AP_stonin-1_MHD, Mu homology domain (MHD) 0.001
>gnl|CDD|211363 cd09252, AP-3_Mu3_Cterm, C-terminal domain of medium Mu3 subunit in adaptor protein (AP) complex AP-3 Back     alignment and domain information 
 Score =  326 bits (838), Expect = e-111
 Identities = 116/248 (46%), Positives = 162/248 (65%), Gaps = 3/248 (1%)

Query: 167 VPWRPTDVKYANNEVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFAN 226
           VPWR   VKY NNE+YVD+VEE+DAI+++ G  V  E+ G +  N  LSG+PDLTLS  N
Sbjct: 1   VPWRRAGVKYTNNEIYVDVVEEIDAIVDKSGKPVSGEVSGSIDCNSRLSGMPDLTLSLNN 60

Query: 227 PSILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVK--KLKSTPIYVKPQLTSDA 284
           P +L D  FHPCVR   WES ++LSF+PPDG+F LMSYRV    L   P+YVKPQ++   
Sbjct: 61  PGLLDDPSFHPCVRLSRWESDRVLSFIPPDGKFTLMSYRVDLNSLVQLPVYVKPQISLGK 120

Query: 285 GTCRISVMVGIRNDPGKTIDSIILQFQLPPCILSADLTSNHGTVNVL-SNKICTWSIGRI 343
           G  R  + VG R + GKTI++++++  LP  + S  LT++HGT +   S K   WSIG++
Sbjct: 121 GGGRFEISVGPRGNLGKTIENVVVEIPLPKGVKSLRLTASHGTFSFDSSTKTLVWSIGKL 180

Query: 344 PKDKAPSLSGTMVLETGLETLRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKGFR 403
              K P+L G++ LE+G E     P+  V F+I G   SGL++D LD+ N   + +KG +
Sbjct: 181 TPGKTPTLRGSISLESGEEAPSEPPSISVSFKIPGYLPSGLKVDSLDIYNEKYKPFKGVK 240

Query: 404 AVTRAGEY 411
            +T+AG+Y
Sbjct: 241 YITKAGKY 248

AP complexes participate in the formation of intracellular coated transport vesicles and select cargo molecules for incorporation into the coated vesicles in the late secretory and endocytic pathways. There are four AP complexes, AP-1, AP-2, AP-3, and AP-4, described in various eukaryotic organisms. Each AP complex consists of four subunits: two large chains (one each of gamma/alpha/delta/epsilon and beta1-4, respectively), a medium mu chain (mu1-4), and a small sigma chain (sigma1-4). Each of the four subunits from the different AP complexes exhibits similarity with each other. This family corresponds to the C-terminal domain of heterotetrameric adaptor protein complex 3 (AP-3) medium mu3 subunit, which includes two closely related homologs, mu3A (P47A, encoded by ap3m1) and mu1B (P47B, encoded by ap3m2). Mu3A is ubiquitously expressed, but mu3B is specifically expressed in neurons and neuroendocrine cells. AP-3 is particularly important for targeting integral membrane proteins to lysosomes and lysome-related organelles at trans-Golgi network (TGN) and/or endosomes, such as the yeast vacuole, fly pigment granules and mammalian melanosomes, platelet dense bodies and the secretory lysosomes of cytotoxic T lymphocytes. Unlike AP-1 and AP-2, which function in conjunction with clathrin which is a scaffolding protein participating in the formation of coated vesicles, the nature of the outer shell of AP-3 containing coats remains to be elucidated. Membrane-anchored cargo molecules interact with adaptors through short sorting signals in their cytosolic segments. Tyrosine-based endocytotic signals are one of the most important sorting signals. They are of the form Y-X-X-Phi, where Y is tyrosine, X is any amino acid and Phi is a bulky hydrophobic residue that can be Leu, Ile, Met, Phe, or Val. These kinds of sorting signals can be recognized by the C-terminal domain of AP-3 mu3 subunit, also known as Y-X-X-Phi signal-binding domain that contains two hydrophobic pockets, one for the tyrosine-binding and one for the bulky hydrophobic residue-binding. Length = 248
>gnl|CDD|211372 cd09261, AP-3_Mu3B_Cterm, C-terminal domain of medium Mu3B subunit in neuron-specific adaptor protein (AP) complex AP-3 Back     alignment and domain information
>gnl|CDD|211371 cd09260, AP-3_Mu3A_Cterm, C-terminal domain of medium Mu3A subunit in ubiquitously expressed adaptor protein (AP) complex AP-3 Back     alignment and domain information
>gnl|CDD|216199 pfam00928, Adap_comp_sub, Adaptor complexes medium subunit family Back     alignment and domain information
>gnl|CDD|211360 cd07954, AP_MHD_Cterm, C-terminal domain of adaptor protein (AP) complexes medium mu subunits and its homologs (MHD) Back     alignment and domain information
>gnl|CDD|211361 cd09250, AP-1_Mu1_Cterm, C-terminal domain of medium Mu1 subunit in clathrin-associated adaptor protein (AP) complex AP-1 Back     alignment and domain information
>gnl|CDD|211362 cd09251, AP-2_Mu2_Cterm, C-terminal domain of medium Mu2 subunit in ubiquitously expressed clathrin-associated adaptor protein (AP) complex AP-2 Back     alignment and domain information
>gnl|CDD|211369 cd09258, AP-1_Mu1A_Cterm, C-terminal domain of medium Mu1A subunit in ubiquitously expressed clathrin-associated adaptor protein (AP) complex AP-1 Back     alignment and domain information
>gnl|CDD|211364 cd09253, AP-4_Mu4_Cterm, C-terminal domain of medium Mu4 subunit in adaptor protein (AP) complex AP-4 Back     alignment and domain information
>gnl|CDD|211370 cd09259, AP-1_Mu1B_Cterm, C-terminal domain of medium Mu1B subunit in epithelial cell-specific clathrin-associated adaptor protein (AP) complex AP-1 Back     alignment and domain information
>gnl|CDD|211367 cd09256, AP_MuD_MHD, Mu-homology domain (MHD) of a adaptor protein (AP) encoded by mu-2 related death-inducing gene, MuD (also known as MUDENG) Back     alignment and domain information
>gnl|CDD|211366 cd09255, AP-like_stonins_MHD, Mu homology domain (MHD) of adaptor-like proteins (AP-like), stonins Back     alignment and domain information
>gnl|CDD|211374 cd09263, AP_stonin-2_MHD, Mu homology domain (MHD) of adaptor-like protein (AP-like), stonin-2 Back     alignment and domain information
>gnl|CDD|211368 cd09257, AP_muniscins_like_MHD, Mu-homology domain (MHD) of muniscins adaptor proteins (AP) and similar proteins Back     alignment and domain information
>gnl|CDD|211373 cd09262, AP_stonin-1_MHD, Mu homology domain (MHD) of adaptor-like protein (AP-like), stonin-1 (also called Stoned B-like factor) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 415
KOG0938446 consensus Adaptor complexes medium subunit family 100.0
KOG2740418 consensus Clathrin-associated protein medium chain 100.0
KOG0937424 consensus Adaptor complexes medium subunit family 100.0
PF00928262 Adap_comp_sub: Adaptor complexes medium subunit fa 100.0
KOG2635512 consensus Medium subunit of clathrin adaptor compl 100.0
KOG2677922 consensus Stoned B synaptic vesicle biogenesis pro 99.97
PF01217141 Clat_adaptor_s: Clathrin adaptor complex small cha 99.94
COG5030152 APS2 Clathrin adaptor complex, small subunit [Intr 99.86
KOG0935143 consensus Clathrin adaptor complex, small subunit 99.8
KOG0934145 consensus Clathrin adaptor complex, small subunit 99.77
KOG0936182 consensus Clathrin adaptor complex, small subunit 99.75
KOG3343175 consensus Vesicle coat complex COPI, zeta subunit 99.75
COG5541187 RET3 Vesicle coat complex COPI, zeta subunit [Post 99.31
PF10291257 muHD: Muniscin C-terminal mu homology domain; Inte 99.24
PF15001189 AP-5_subunit_s1: AP-5 complex subunit sigma-1 96.67
PF03164415 Mon1: Trafficking protein Mon1; InterPro: IPR00435 94.27
PF08923119 MAPKK1_Int: Mitogen-activated protein kinase kinas 91.09
PF1377483 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3 89.26
COG5122134 TRS23 Transport protein particle (TRAPP) complex s 88.01
KOG0997523 consensus Uncharacterized conserved protein Sand [ 84.97
PF04099142 Sybindin: Sybindin-like family ; InterPro: IPR0072 82.34
KOG0859217 consensus Synaptobrevin/VAMP-like protein [Intrace 82.15
>KOG0938 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-95  Score=671.08  Aligned_cols=408  Identities=29%  Similarity=0.538  Sum_probs=370.7

Q ss_pred             CeEEEEEEcCCCCEEEEEccCCCCCCcchHHHHHHHHhccCCCCCCCCEEEcCCEEEEEEEeCCEEEEEEecCCCChhhH
Q 014970            1 MLQCIFLLADNGAVILEKQLTGHRVDRSICDWFWDHVISQGDSFKSMPVIASPTHYIFQIVRAGITFLACTQVEMPPLMG   80 (415)
Q Consensus         1 MI~~i~I~~~~G~~l~~r~y~~~~~~~~~~~~f~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~v~~~~~~~n~l~~   80 (415)
                      ||+++||+|.+|++|+.|.||+ ++.++..|.|+.++++..  .-.+|+..++++.++|.+.++||+++++.+|.|.+++
T Consensus         1 misglfi~n~rGevlink~fr~-dlkrs~~diFRv~vi~n~--d~r~PV~~igsttf~~~r~~nl~lvaitksN~Nva~v   77 (446)
T KOG0938|consen    1 MISGLFIYNLRGEVLINKTFRD-DLKRSIVDIFRVQVINNL--DVRSPVLTIGSTTFHHIRSSNLWLVAITKSNANVAAV   77 (446)
T ss_pred             CcceEEEEeccCcEEEehhhhh-hhhhhHHHHHHHhhhhcc--ccCCCeeEecceeEEEEeeccEEEEEEecCCCchhhH
Confidence            9999999999999999999999 999999999999999863  3567999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCHHHHHhhHHHHHHHHHHHhcCCcccccChhhHhhccCCCcchhcccccccCC---CCCccC
Q 014970           81 IEFLCRVADILSDYLGELNEDLIKDNFVIVYELLDEMIDNGFPLTTEPNILREMIAPPNIVSKMLSVVTGN---SSNVSD  157 (415)
Q Consensus        81 ~~~L~~i~~~l~~~~~~l~e~~i~~N~~~i~~lldEiid~G~p~~t~~~~l~~~i~~~s~~~k~~~~~~g~---~~~~~~  157 (415)
                      ++||..+.+++..|||+.+|+.|++||.+|||+||||+|+|+||+|++++|+..|.++.+-++- +...-+   .+++..
T Consensus        78 ~eFl~kl~avm~aYfgk~~Eeaiknnf~lI~ElLDemld~G~pqnte~~al~~~is~~~Vrs~g-~~ls~k~s~~sq~~~  156 (446)
T KOG0938|consen   78 FEFLYKLDAVMNAYFGKDREEAIKNNFVLIYELLDEMLDFGIPQNTEPNALKAQISQKGVRSMG-GVLSSKSSPTSQATE  156 (446)
T ss_pred             HHHHHHHHHHHHHHhcccchhhhhhceEeHHHHHHHHHhcCCCccCChhHHHhhhhhhhhhccc-cccCCcCCCCccccc
Confidence            9999999999999999999999999999999999999999999999999999999998774431 100000   011111


Q ss_pred             CCCCCCCcCCccCCCCCCcccceEEEEEEEEEEEEEccCCcEEEEEEEEEEEEEEeecCCCeeEEEecCCc---------
Q 014970          158 ILPGATASCVPWRPTDVKYANNEVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANPS---------  228 (415)
Q Consensus       158 ~~~~~~~~~~~wR~~~~~~~~nei~vdv~E~i~~~~~~~G~~~~~~v~G~i~~~~~LsG~P~~~l~ln~~~---------  228 (415)
                      ...++.+..++||+.|++|++||+|+||.|++|..++++|++++++|+|.|.|+++|||||+|+++|||..         
T Consensus       157 ~~ssqv~G~i~WRr~Gi~ykknevfldvvErvNlLmS~~GnVLrs~VsG~V~mk~~LSGmPeckfGlNDkl~~e~kq~es  236 (446)
T KOG0938|consen  157 LRSSQVTGKIGWRREGIKYKKNEVFLDVVERVNLLMSSDGNVLRSDVSGTVDMKTHLSGMPECKFGLNDKLGMESKQSES  236 (446)
T ss_pred             ccccccccccccccccceeccceeEeEehheeeeEEcCCCCEEEeecccEEEEEEeccCCcccccccCcccceeeccccc
Confidence            22245567899999999999999999999999999999999999999999999999999999999999863         


Q ss_pred             ------------------ccccceecceeecCCCCCCceEEEeCCCCcEEEEEEEecCCCCCCEEEEEEEEEcCCceEEE
Q 014970          229 ------------------ILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVKKLKSTPIYVKPQLTSDAGTCRIS  290 (415)
Q Consensus       229 ------------------~l~~~~fH~cV~~~~~~~~~~l~f~PPdg~f~L~~Y~~~~~~~~P~~v~~~~~~~~~~~~~e  290 (415)
                                        .++||+||+||++++|++++.|+|+||||+|+||+||++...++||.|.|.++. .+..+++
T Consensus       237 ks~~~n~~~~sks~~g~v~leDc~FHqCV~L~kFn~eh~IsFvPPDGe~ELMkYr~~enInlPFrV~PiV~e-l~r~kie  315 (446)
T KOG0938|consen  237 KSDFGNKNFPSKSGKGSVLLEDCTFHQCVRLDKFNSEHIISFVPPDGEFELMKYRVTENINLPFRVTPIVTE-LGRTKIE  315 (446)
T ss_pred             cccccccCCCcccCCceEEeeccchheeeccccccccceEEEeCCCCceEeEeeeeccCcccceEeeeheec-ccceeEE
Confidence                              289999999999999999999999999999999999999999999999999984 4578999


Q ss_pred             EEEEeecCCC--CceeeEEEEEeCCCCceeeEEEeccccceeeeC--cEEEEEcCCCCCCCCeeEEEEEEeecCC--cCC
Q 014970          291 VMVGIRNDPG--KTIDSIILQFQLPPCILSADLTSNHGTVNVLSN--KICTWSIGRIPKDKAPSLSGTMVLETGL--ETL  364 (415)
Q Consensus       291 i~~~~~~~~~--~~~~~v~v~ip~p~~~~~~~~~~~~G~~~~~~~--~~l~W~I~~~~~~~~~~l~g~~~~~~~~--~~~  364 (415)
                      +.+.+++.++  ..+.+|.++||+|+++..++++++.|++ +|.+  ++++|+|.++.|..|.++++++++.+..  ...
T Consensus       316 ~ri~iks~f~~kl~a~~v~~rIPvP~ntv~~n~~v~~Gka-ky~psen~ivWki~kf~G~tE~tlsAevels~Tt~nkq~  394 (446)
T KOG0938|consen  316 YRITIKSLFPPKLLAKDVVVRIPVPPNTVKCNISVSNGKA-KYVPSENAIVWKINKFNGLTESTLSAEVELSDTTQNKQQ  394 (446)
T ss_pred             EEEEEeccCCchhhhcceEEEecCCCccccceeEEecCcc-ccCcccceEEEEecccCCcccceeEEEEEeccCcccccc
Confidence            9999999874  3889999999999999999999999999 9999  9999999999999999999999996543  335


Q ss_pred             CCCCcEEEEEEECcccccccEEeEEEee--cCCCccccceEEEEecCcEEEc
Q 014970          365 RVFPTFQVEFRIMGVALSGLQIDKLDLQ--NVPNRLYKGFRAVTRAGEYEVR  414 (415)
Q Consensus       365 ~~~~pi~v~F~~~~~~~SGl~V~~l~v~--~~~~~~~k~vkY~t~sg~y~ir  414 (415)
                      |..|||+++|++|+++.||+.|++++|.  +.+|+..|||||+|+||+||+|
T Consensus       395 WtrPPIsleFeV~MFt~SGL~VrylkV~e~~Sk~~~vkWVrYitkaGsyEiR  446 (446)
T KOG0938|consen  395 WTRPPISLEFEVPMFTNSGLVVRYLKVSEKDSKHRAVKWVRYITKAGSYEIR  446 (446)
T ss_pred             ccCCCceeEEeeeeecCCceEEEEEEEecccCCCceEEEEEEecccceeeeC
Confidence            8899999999999999999999999994  4689999999999999999998

>KOG2740 consensus Clathrin-associated protein medium chain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0937 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00928 Adap_comp_sub: Adaptor complexes medium subunit family; InterPro: IPR008968 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG2635 consensus Medium subunit of clathrin adaptor complex [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2677 consensus Stoned B synaptic vesicle biogenesis protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>COG5030 APS2 Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0935 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0934 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0936 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3343 consensus Vesicle coat complex COPI, zeta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5541 RET3 Vesicle coat complex COPI, zeta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10291 muHD: Muniscin C-terminal mu homology domain; InterPro: IPR018808 The muniscins are a family of endocytic adaptors that is conserved from yeast to humans Back     alignment and domain information
>PF15001 AP-5_subunit_s1: AP-5 complex subunit sigma-1 Back     alignment and domain information
>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain Back     alignment and domain information
>PF08923 MAPKK1_Int: Mitogen-activated protein kinase kinase 1 interacting; InterPro: IPR015019 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases Back     alignment and domain information
>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D Back     alignment and domain information
>COG5122 TRS23 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0997 consensus Uncharacterized conserved protein Sand [Function unknown] Back     alignment and domain information
>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses Back     alignment and domain information
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query415
4ikn_A261 Crystal Structure Of Adaptor Protein Complex 3 (ap- 4e-57
1w63_M423 Ap1 Clathrin Adaptor Core Length = 423 5e-42
2bp5_M435 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 8e-38
2xa7_M446 Ap2 Clathrin Adaptor Core In Active Complex With Ca 1e-36
4en2_M266 Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain 5e-24
4emz_A266 Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain 1e-21
2pr9_A299 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 2e-18
1bxx_A285 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 6e-18
1bw8_A321 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 8e-18
1i31_A314 Mu2 Adaptin Subunit (Ap50) Of Ap2 Clathrin Adaptor, 8e-18
1h6e_A288 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 3e-16
3ml6_A385 A Complex Between Dishevlled2 And Clathrin Adaptor 7e-15
3l81_A301 Crystal Structure Of Adaptor Protein Complex 4 (Ap- 8e-12
>pdb|4IKN|A Chain A, Crystal Structure Of Adaptor Protein Complex 3 (ap-3) Mu3a Subunit C- Terminal Domain, In Complex With A Sorting Peptide From Tgn38 Length = 261 Back     alignment and structure 
Iteration: 1

 Score =  218 bits (556), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 104/254 (40%), Positives = 163/254 (64%), Gaps = 5/254 (1%)
Query: 167 VPWRPTDVKYANNEVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFAN 226
           +PWR   VKY NNE Y D+VEE+DAII++ G  V  EI G +     LSG+PDL+LSF N
Sbjct: 8   IPWRRAGVKYTNNEAYFDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDLSLSFMN 67
Query: 227 PSILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRV--KKLKSTPIYVKPQLT-SD 283
           P +L DV FHPC+RF+ WES ++LSF+PPDG F+L+SYRV  + L + P+YVK  ++  +
Sbjct: 68  PRLLDDVSFHPCIRFKRWESERVLSFIPPDGNFRLISYRVSSQNLVAIPVYVKHNISFKE 127
Query: 284 AGTC-RISVMVGIRNDPGKTIDSIILQFQLPPCILSADLTSNHGTVNVLS-NKICTWSIG 341
             +C R  + +G + + GKTI+ I +   +P  +L+ +LT   G+       K+  W +G
Sbjct: 128 NSSCGRFDITIGPKQNMGKTIEGITVTVHMPKVVLNMNLTPTQGSYTFDPVTKVLAWDVG 187
Query: 342 RIPKDKAPSLSGTMVLETGLETLRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKG 401
           +I   K PSL G + L++G       P   ++F+I  +A+SGL++++LD+     + +KG
Sbjct: 188 KITPQKLPSLKGLVNLQSGAPKPEENPNLNIQFKIQQLAISGLKVNRLDMYGEKYKPFKG 247
Query: 402 FRAVTRAGEYEVRS 415
            + +T+AG+++VR+
Sbjct: 248 VKYITKAGKFQVRT 261
>pdb|1W63|M Chain M, Ap1 Clathrin Adaptor Core Length = 423 Back     alignment and structure
>pdb|2BP5|M Chain M, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Non-Canonical Internalization Peptide Vedyeqglsg Length = 435 Back     alignment and structure
>pdb|2XA7|M Chain M, Ap2 Clathrin Adaptor Core In Active Complex With Cargo Peptides Length = 446 Back     alignment and structure
>pdb|4EN2|M Chain M, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1 Adaptin Subunit Of Ap1 Adaptor (Second Domain) Length = 266 Back     alignment and structure
>pdb|4EMZ|A Chain A, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1 Adaptin Subunit Of Ap1 Adaptor (Second Domain) Length = 266 Back     alignment and structure
>pdb|2PR9|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Gabaa Receptor-Gamma2 Subunit-Derived Internalization Peptide Deeygyecl Length = 299 Back     alignment and structure
>pdb|1BXX|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Tgn38 Internalization Peptide Dyqrln Length = 285 Back     alignment and structure
>pdb|1BW8|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Egfr Internalization Peptide Fyralm Length = 321 Back     alignment and structure
>pdb|1I31|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Clathrin Adaptor, Complexed With Egfr Internalization Peptide Fyralm At 2.5 A Resolution Length = 314 Back     alignment and structure
>pdb|1H6E|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Ctla-4 Internalization Peptide Ttgvyvkmppt Length = 288 Back     alignment and structure
>pdb|3ML6|A Chain A, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2 Length = 385 Back     alignment and structure
>pdb|3L81|A Chain A, Crystal Structure Of Adaptor Protein Complex 4 (Ap-4) Mu4 Su Terminal Domain, In Complex With A Sorting Peptide From The Precursor Protein (App) Length = 301 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query415
2vgl_M435 AP-2 complex subunit MU-1; cytoplasmic vesicle, al 8e-90
1w63_M423 Adaptor-related protein complex 1, MU 1 subunit; e 1e-85
1i31_A314 Clathrin coat assembly protein AP50; beta-sandwich 6e-68
3ml6_A385 Chimeric complex between protein dishevlled2 HOMO 1e-67
3l81_A301 AP-4 complex subunit MU-1; immunoglobulin-like bet 1e-61
4en2_M266 AP-1 complex subunit MU-1; human immunodeficiency 2e-59
2vgl_S142 AP-2 complex subunit sigma-1; cytoplasmic vesicle, 1e-20
1w63_Q158 Adapter-related protein complex 1 sigma 1A subunit 2e-20
3tjz_C153 Coatomer subunit zeta-1; protein trafficking, golg 5e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M Length = 435 Back     alignment and structure
 Score =  277 bits (709), Expect = 8e-90
 Identities = 107/442 (24%), Positives = 189/442 (42%), Gaps = 36/442 (8%)

Query: 1   MLQCIFLLADNGAVILEKQLTGHRVDRSICDWFWDHVISQGDSFKSMPVIASPTHYIFQI 60
           M+  +F+    G V++ +      + R+  D F  +VI      +S PV        F +
Sbjct: 1   MIGGLFIYNHKGEVLISRVYRDD-IGRNAVDAFRVNVIHARQQVRS-PVTNIARTSFFHV 58

Query: 61  VRAGITFLACTQVEMPPLMGIEFLCRVADILSDYLGELNEDLIKDNFVIVYELLDEMIDN 120
            R+ I   A T+  +   M  EFL ++ D+++ Y G+++E+ IK+NFV++YELLDE++D 
Sbjct: 59  KRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDF 118

Query: 121 GFPLTTEPNILREMIAPPNIVSKMLSVVTGNSSNVSDILPGATASCVPWRPTDVKYANNE 180
           G+P  +E   L+  I    I S+  +    +               + WR   +KY  NE
Sbjct: 119 GYPQNSETGALKTFITQQGIKSQHQTKEEQSQITS------QVTGQIGWRREGIKYRRNE 172

Query: 181 VYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANP------------- 227
           +++D++E ++ +++  G ++   + G V +   LSG+P+      +              
Sbjct: 173 LFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADE 232

Query: 228 --------SILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVKKLKSTPIYVKPQ 279
                     + D  FH CVR   ++S + +SF+PPDG+F+LM YR  K    P  V P 
Sbjct: 233 TSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPL 292

Query: 280 LTSDAGT-CRISVMVGIRNDPGKTIDSIILQFQLPPCILSADLTSNHGTVN-VLSNKICT 337
           +     T   + V++     P      I ++   P       +    G      S     
Sbjct: 293 VREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIV 352

Query: 338 WSIGRIPKDKAPSLSGTMVLETG-----LETLRVFPTFQVEFRIMGVALSGLQIDKLDLQ 392
           W I R+   K   +S  + L             +   F+V F   G+ +  L++ +  L 
Sbjct: 353 WKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKLN 412

Query: 393 NVPNRLYKGFRAVTRAGEYEVR 414
              + + K  R + R+G YE R
Sbjct: 413 YSDHDVIKWVRYIGRSGIYETR 434
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 423 Back     alignment and structure
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A Length = 314 Back     alignment and structure
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus} Length = 385 Back     alignment and structure
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens} Length = 301 Back     alignment and structure
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A Length = 266 Back     alignment and structure
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S Length = 142 Back     alignment and structure
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 158 Back     alignment and structure
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A Length = 153 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query415
2vgl_M435 AP-2 complex subunit MU-1; cytoplasmic vesicle, al 100.0
1w63_M423 Adaptor-related protein complex 1, MU 1 subunit; e 100.0
1i31_A314 Clathrin coat assembly protein AP50; beta-sandwich 100.0
4en2_M266 AP-1 complex subunit MU-1; human immunodeficiency 100.0
3ml6_A385 Chimeric complex between protein dishevlled2 HOMO 100.0
3l81_A301 AP-4 complex subunit MU-1; immunoglobulin-like bet 100.0
1w63_Q158 Adapter-related protein complex 1 sigma 1A subunit 99.97
2vgl_S142 AP-2 complex subunit sigma-1; cytoplasmic vesicle, 99.97
3tjz_C153 Coatomer subunit zeta-1; protein trafficking, golg 99.96
3g9h_A328 Suppressor of yeast profilin deletion; SYP1, MU, a 99.14
2nut_C196 Vesicle-trafficking protein SEC22B; human copii SE 91.9
2vx8_A169 Nucleoporin-like protein RIP, vesicle-associated m 91.49
4b93_A189 Vesicle-associated membrane protein 7; endocytosis 90.67
4afi_A173 AP-3 complex subunit delta-1, vesicle-associated p 90.04
3cpt_A143 Mitogen-activated protein kinase kinase 1- interac 89.72
3cue_A219 Transport protein particle 23 kDa subunit; membran 83.84
3kyq_A199 YKT6, synaptobrevin homolog YKT6; V-snare homolog, 80.84
3bw6_A144 Synaptobrevin homolog YKT6; YKT6P, farnesylation, 80.49
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M Back     alignment and structure
Probab=100.00  E-value=2.4e-93  Score=722.18  Aligned_cols=404  Identities=26%  Similarity=0.499  Sum_probs=356.5

Q ss_pred             CeEEEEEEcCCCCEEEEEccCCCCCCcchHHHHHHHHhccCCCCCCCCEEEcCCEEEEEEEeCCEEEEEEecCCCChhhH
Q 014970            1 MLQCIFLLADNGAVILEKQLTGHRVDRSICDWFWDHVISQGDSFKSMPVIASPTHYIFQIVRAGITFLACTQVEMPPLMG   80 (415)
Q Consensus         1 MI~~i~I~~~~G~~l~~r~y~~~~~~~~~~~~f~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~v~~~~~~~n~l~~   80 (415)
                      ||+++||+|++|+++++|+|++ +.+++.++.|.+++....+ .+.+|+++.++++++|+++++|||+++++.++|++++
T Consensus         1 MI~~i~I~~~~Gk~~l~k~y~~-~~~~~~~~~f~~~v~~~~~-~~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~   78 (435)
T 2vgl_M            1 MIGGLFIYNHKGEVLISRVYRD-DIGRNAVDAFRVNVIHARQ-QVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMV   78 (435)
T ss_dssp             CCCEEEEECTTCCEEEEEECSS-SCCHHHHHHHHHHTTTCSS-CCCCSEEEETTEEEEEEEETTEEEEEEESSCCCHHHH
T ss_pred             CeEEEEEECCCCCEEEEEecCC-CCChhHHHHHHHHHhcccc-CCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHH
Confidence            9999999999999999999998 8888889999998886533 3678999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCHHHHHhhHHHHHHHHHHHhcCCcccccChhhHhhccCCCcchhcccccccCCCCCccCCCC
Q 014970           81 IEFLCRVADILSDYLGELNEDLIKDNFVIVYELLDEMIDNGFPLTTEPNILREMIAPPNIVSKMLSVVTGNSSNVSDILP  160 (415)
Q Consensus        81 ~~~L~~i~~~l~~~~~~l~e~~i~~N~~~i~~lldEiid~G~p~~t~~~~l~~~i~~~s~~~k~~~~~~g~~~~~~~~~~  160 (415)
                      ++|||+++++|++|||+++|++|++||+++|++||||+|+|+|++|+++.|++++.++++.+++... .+     +...|
T Consensus        79 le~L~~~v~vl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~~~~~~~-~~-----~~~~~  152 (435)
T 2vgl_M           79 FEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQHQTK-EE-----QSQIT  152 (435)
T ss_dssp             HHHHHHHHHHHHHHHSSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHGGGCCCCCCCCC-----------------
T ss_pred             HHHHHHHHHHHHHHHhccCHHHHHHhHHHHHHHHHHHhcCCEEEecCHHHHHHHhcccccccccccc-cc-----ccccc
Confidence            9999999999999999999999999999999999999999999999999999999999997765311 11     12344


Q ss_pred             CCCCcCCccCCCCCCcccceEEEEEEEEEEEEEccCCcEEEEEEEEEEEEEEeecCCCeeEEEecCC-------------
Q 014970          161 GATASCVPWRPTDVKYANNEVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANP-------------  227 (415)
Q Consensus       161 ~~~~~~~~wR~~~~~~~~nei~vdv~E~i~~~~~~~G~~~~~~v~G~i~~~~~LsG~P~~~l~ln~~-------------  227 (415)
                      ++.++++|||+.|++|++|||||||+|+++++++++|.++.++|.|+|.|+|+|+|+|+|+|+||++             
T Consensus       153 ~~~~~~i~wr~~gi~~~~nei~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~ln~~~~~~~~~~~~~~~  232 (435)
T 2vgl_M          153 SQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADE  232 (435)
T ss_dssp             ------CCSSCSCCCCSSCEEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEEECSSCCEEEEEECSSSCC----------
T ss_pred             cccccccccccccCCcCcceEEEEEEEEEEEEEcCCCCEEEEEEEEEEEEEEEeCCCCeEEEEeCchhhccccccccccc
Confidence            5667789999999999999999999999999999999999999999999999999999999999874             


Q ss_pred             --------cccccceecceeecCCCCCCceEEEeCCCCcEEEEEEEecCCCCCCEEEEEEEEEcCCceEEEEEEEeecCC
Q 014970          228 --------SILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVKKLKSTPIYVKPQLTSDAGTCRISVMVGIRNDP  299 (415)
Q Consensus       228 --------~~l~~~~fH~cV~~~~~~~~~~l~f~PPdg~f~L~~Y~~~~~~~~P~~v~~~~~~~~~~~~~ei~~~~~~~~  299 (415)
                              ..++||+|||||++++|+++++|+|+||||+|+||+||++.+..+||.+.||++.. +++++|+++++++++
T Consensus       233 ~~~~~~~~~~l~d~~fH~cV~~~~f~~~r~isF~PPdg~F~Lm~Yr~~~~~~~P~~i~~~~~~~-~~~~ve~~l~~~~~~  311 (435)
T 2vgl_M          233 TSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREV-GRTKLEVKVVIKSNF  311 (435)
T ss_dssp             -------CCCCCEEEECTTEEEC-----CCEEECCCSEEEEEEEEEECSSCCCSEEEEEEEECC-TTTEEEEEEEEEECS
T ss_pred             ccccccCceEccccccceeecHhHhccCceEEEECCCCcEEEEEEEecCCcCCCeEEEEEEEec-CCCEEEEEEEEeCCC
Confidence                    24789999999999999999999999999999999999998888999999999854 457899999988776


Q ss_pred             CC--ceeeEEEEEeCCCCceeeEEEeccccceeeeC--cEEEEEcCCCCCCCCeeEEEEEEeecCC-cCCCCCCcEEEEE
Q 014970          300 GK--TIDSIILQFQLPPCILSADLTSNHGTVNVLSN--KICTWSIGRIPKDKAPSLSGTMVLETGL-ETLRVFPTFQVEF  374 (415)
Q Consensus       300 ~~--~~~~v~v~ip~p~~~~~~~~~~~~G~~~~~~~--~~l~W~I~~~~~~~~~~l~g~~~~~~~~-~~~~~~~pi~v~F  374 (415)
                      +.  .+++|.|+||+|+++..+.++++.|++ +|++  ++++|+|++++++.+++++|+++|.... ...+.++||+|+|
T Consensus       312 ~~~~~~~~V~I~IP~P~~~~~~~~~~~~G~~-~y~~~~~~l~W~I~~~~~~~~~~l~~~~~l~~~~~~~~~~~~pi~v~F  390 (435)
T 2vgl_M          312 KPSLLAQKIEVRIPTPLNTSGVQVICMKGKA-KYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNF  390 (435)
T ss_dssp             CTTSEEEEEEEEEECCSSCCCEEEEESSSEE-EEETTTTEEEEEEEEEETTCEEEEEEEEECCCCSCSCCCCCCCEEEEE
T ss_pred             CCCceeeEEEEEEECCCCCCCceEEecceeE-EEccCCCEEEEEeccCCCCCCEEEEEEEEecCCCcCcccCCCcEEEEE
Confidence            53  699999999999999999999999999 9988  9999999999999999999999997643 3456799999999


Q ss_pred             EECcccccccEEeEEEeecC-----CCccccceEEEEecCcEEEcC
Q 014970          375 RIMGVALSGLQIDKLDLQNV-----PNRLYKGFRAVTRAGEYEVRS  415 (415)
Q Consensus       375 ~~~~~~~SGl~V~~l~v~~~-----~~~~~k~vkY~t~sg~y~ir~  415 (415)
                      ++| +++||++|+++++.+.     +|+|+|||||+|+||+|++|+
T Consensus       391 ~i~-~t~Sgl~V~~l~v~~~~~~~~~y~~~kwVrY~t~sg~y~~R~  435 (435)
T 2vgl_M          391 EVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC  435 (435)
T ss_dssp             EES-SCTTCCCEEEEEEECSSSSCBGGGSEEEEEEEEEEEEEEECC
T ss_pred             EEE-ecccccEEEEEEEeccccccCCCCCcCceEEEEeCCeEEEcC
Confidence            999 9999999999999543     799999999999999999996
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A Back     alignment and structure
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A Back     alignment and structure
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus} Back     alignment and structure
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens} Back     alignment and structure
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S Back     alignment and structure
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A Back     alignment and structure
>3g9h_A Suppressor of yeast profilin deletion; SYP1, MU, adaptor, endocytosis, phosphoprotein; HET: 1PG; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A Back     alignment and structure
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A Back     alignment and structure
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A Back     alignment and structure
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens} Back     alignment and structure
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A Back     alignment and structure
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus} Back     alignment and structure
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 415
d2pr9a1277 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin s 3e-68
d2vglm2141 d.110.4.2 (M:1-141) Mu2 adaptin (clathrin coat ass 5e-36
d2vgls_142 d.110.4.2 (S:) Sigma2 adaptin (clathrin coat assem 2e-23
>d2pr9a1 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 277 Back     information, alignment and structure

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
family: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
domain: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  215 bits (549), Expect = 3e-68
 Identities = 63/276 (22%), Positives = 112/276 (40%), Gaps = 28/276 (10%)

Query: 167 VPWRPTDVKYANNEVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFAN 226
           + WR   +KY  NE+++D++E ++ +++  G ++   + G V +   LSG+P+      +
Sbjct: 1   IGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMND 60

Query: 227 P---------------------SILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYR 265
                                   + D  FH CVR   ++S + +SF+PPDG+F+LM YR
Sbjct: 61  KIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYR 120

Query: 266 VKKLKSTPIYVKPQLTSDAGT-CRISVMVGIRNDPGKTIDSIILQFQLPPCILSADLTSN 324
             K    P  V P +     T   + V++     P      I ++   P       +   
Sbjct: 121 TTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICM 180

Query: 325 HGTVN-VLSNKICTWSIGRIPKDKAPSLSGTMVL-ETGLETLRVFPTFQVEFRIM----G 378
            G      S     W I R+   K   +S  + L  T  +     P   + F +     G
Sbjct: 181 KGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSG 240

Query: 379 VALSGLQIDKLDLQNVPNRLYKGFRAVTRAGEYEVR 414
           + +  L++ +  L    + + K  R + R+G YE R
Sbjct: 241 LKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETR 276

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query415
d2pr9a1277 Second domain of Mu2 adaptin subunit (ap50) of ap2 100.0
d2vglm2141 Mu2 adaptin (clathrin coat assembly protein AP50) 100.0
d2vgls_142 Sigma2 adaptin (clathrin coat assembly protein AP1 99.95
d3cpta1116 MEK binding partner 1, MP1 {Human (Homo sapiens) [ 93.86
d2fh5a1129 Signal recognition particle receptor alpha subunit 88.97
>d2pr9a1 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
family: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
domain: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.5e-61  Score=457.59  Aligned_cols=245  Identities=26%  Similarity=0.492  Sum_probs=219.4

Q ss_pred             CccCCCCCCcccceEEEEEEEEEEEEEccCCcEEEEEEEEEEEEEEeecCCCeeEEEecCCc------------------
Q 014970          167 VPWRPTDVKYANNEVYVDLVEEMDAIINRDGVLVKCEIYGEVQVNCLLSGLPDLTLSFANPS------------------  228 (415)
Q Consensus       167 ~~wR~~~~~~~~nei~vdv~E~i~~~~~~~G~~~~~~v~G~i~~~~~LsG~P~~~l~ln~~~------------------  228 (415)
                      +|||+.|++|++|||||||+|+++|+++++|.++.++|.|+|.|+|+|+|+|+|+|+||++.                  
T Consensus         1 i~WR~~~i~y~~NEi~vDV~E~i~~~~~~~G~~~~~~V~G~I~~~s~LsG~P~~~l~Ln~~~~~~~~~~~~~~~~~~~~~   80 (277)
T d2pr9a1           1 IGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGK   80 (277)
T ss_dssp             CTTSCSCCCCSSCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEECSSSCEEEEEESBC------------------C
T ss_pred             CCccCCCCcccCCEEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEecCCCCeEEEEecchhhccccccccccccccccc
Confidence            59999999999999999999999999999999999999999999999999999999998753                  


Q ss_pred             ---ccccceecceeecCCCCCCceEEEeCCCCcEEEEEEEecCCCCCCEEEEEEEEEcCCceEEEEEEEeecCCC--Cce
Q 014970          229 ---ILHDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVKKLKSTPIYVKPQLTSDAGTCRISVMVGIRNDPG--KTI  303 (415)
Q Consensus       229 ---~l~~~~fH~cV~~~~~~~~~~l~f~PPdg~f~L~~Y~~~~~~~~P~~v~~~~~~~~~~~~~ei~~~~~~~~~--~~~  303 (415)
                         .++||+||||||++.|+++++|+|+||||+|+||+||++.+..+||.+.+++.... +.++++.++++++.+  ..+
T Consensus        81 ~~~~l~d~~fH~cV~~~~f~~~~~i~F~PPdG~F~Lm~Y~~~~~~~~P~~i~~~~~~~~-~~~~~~~i~l~~~~~~~~~~  159 (277)
T d2pr9a1          81 QSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVG-RTKLEVKVVIKSNFKPSLLA  159 (277)
T ss_dssp             CCBCCSEEEECTTSBCC-----CCEEECCCSEEEEEEEEEECSSCCCCEEEEEEEEEET-TTEEEEEEEEEECSCTTCEE
T ss_pred             CceEccceeeeeccccccccccceEeecCCCCcEEEEEEEcCCCcCCCcEEEEEEEecc-CcEEEEEEEEEeccCCCeee
Confidence               48999999999999999999999999999999999999988999999999998654 457888888887653  489


Q ss_pred             eeEEEEEeCCCCceeeEEEeccccceeeeC--cEEEEEcCCCCCCCCeeEEEEEEeecCCcCC-CCCCcEEEEEEECccc
Q 014970          304 DSIILQFQLPPCILSADLTSNHGTVNVLSN--KICTWSIGRIPKDKAPSLSGTMVLETGLETL-RVFPTFQVEFRIMGVA  380 (415)
Q Consensus       304 ~~v~v~ip~p~~~~~~~~~~~~G~~~~~~~--~~l~W~I~~~~~~~~~~l~g~~~~~~~~~~~-~~~~pi~v~F~~~~~~  380 (415)
                      ++|.|+||+|..+..++++++.|++ +|+.  ++++|+|++++++.+++|+|++++....... +.++|++|+|++| ++
T Consensus       160 ~~v~I~iP~P~~~~~~~~~~~~G~~-~y~~~~~~l~W~I~k~~~~~~~~l~~~~~~~~~~~~~~~~~~pi~v~F~ip-~t  237 (277)
T d2pr9a1         160 QKIEVRIPTPLNTSGVQVICMKGKA-KYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVP-FA  237 (277)
T ss_dssp             EEEEEEEECCTTEEEEEEEESSSEE-EEEGGGTEEEEEEEEEETTCEEEEEEEEEECCCCSSSCCCCCCEEEEEEES-SC
T ss_pred             eEEEEEeeCCCcccCceEEecCceE-EEeccCCEEEEecccccCCccceEEEEEEeccCCCCccccCCcEEEEEEec-cc
Confidence            9999999999999999999999999 9998  9999999999999999999999997654333 5588999999999 89


Q ss_pred             ccccEEeEEEeec-----CCCccccceEEEEecCcEEEc
Q 014970          381 LSGLQIDKLDLQN-----VPNRLYKGFRAVTRAGEYEVR  414 (415)
Q Consensus       381 ~SGl~V~~l~v~~-----~~~~~~k~vkY~t~sg~y~ir  414 (415)
                      +||++|++++|.+     ++|+|+|||||+|+||+|+||
T Consensus       238 ~Sgl~V~~l~v~~~~~~~~~~~~~k~vrY~t~sg~Y~~R  276 (277)
T d2pr9a1         238 PSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETR  276 (277)
T ss_dssp             TTCCCEEEEEEECSSSSCCGGGSEEEEEEEEEEEEEEEC
T ss_pred             ccceEEEEEEEeccccCCCCCCCCCCEEEEEECCCEEEC
Confidence            9999999999943     468999999999999999999
>d3cpta1 d.110.7.1 (A:3-118) MEK binding partner 1, MP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fh5a1 d.110.4.4 (A:1-129) Signal recognition particle receptor alpha subunit, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure