Citrus Sinensis ID: 014977

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-----
Protein Sequence
MTSTVSTSREILPPGPFGSPNAGASASASASFGHPQTAFSDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVRFLKTVSRPRRSCN
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEcccEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEcccccccccccEEEEEEcccccEEEEEEEcccEEEEEEccccEEEEEccEEEEEEccccEEEEEEEcccccccEEEEEEcccccEEEcccccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEEEEEcccccEEEEEEccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccEEccccccEEcccEEEEEEEEccccEEEEEEccccEEEEEEEcccEEEEEEEcccccEEEEEEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEccccEEEEEcccHHHHHcccccccccEHHHHHHHccEEEEEcccccccccccEEEEEEcccccEEEEEEccccEEEEEEcccEEEEEEEcEEEEEEcccccEEEEEccccccccEEEEEcccccEEEEEccccccEEEEEEcccccccEEcccccHHHEEEEcccccEEEEEccccEEEEEEEcccccEEEEEEcccccEEEEEEEEccccEEEEEEccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccEEEEEcccccEEEEEEccccEEEEEEcccEEEEEEEccccccccEEEEHHHHcccccccccccc
Coil and Loop (DISEMBL)
mtstvstsreilppgpfgspnagasasasasfghpqtafsdvdeiELISVSwnqdygcfaagtscgfriyncepfkETFRRDLKSGGFRIVEMLFRCNILALvgagdnsqypptkviiwddhqsrcigefafrsdvrsvklsRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGlcclshhsstsvlacpglqrgqvrIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFntvdgtrlqevrrgvdRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRvvgedsssslstpsqstellnhsssfdtlispstganpgsslsfmrgvlpkyfssewsfaqfhipEVTHFIAAFGSQNTVVIVSMdgsfyrcsfdpvhggeMLQQEYVRFLKTvsrprrscn
Flexible Loop (DISEMBL)
mtstvstsreilppgpFGSPNAGASASASASFGHPQTAFSDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALvgagdnsqypPTKVIIWDDHQSRCIGEFafrsdvrsvklsRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTlirifntvdgtrlqevrrGVDRAEiysialspnvqwlavASDKGTVHIFSLRVRvvgedsssslstpsqstELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVRFlktvsrprrscn
Low Complexity Region (SEG)
MTSTVSTSREILppgpfgspnagasasasasfgHPQTAFSDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFtltldglllatastRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDsssslstpsqsTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVRFLKTVSRPRRSCN
Disordered region (IsUnstruct)
**************************************FSDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV****************************************SFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVRFLKT*********
Disordered Region (DISOPRED)
************************************************SVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV**************************************PGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVR*************
Disordered Region (DISEMBL)
**********ILPPGPFGS**************HPQTAFSDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV******************NHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVRFLKT*********
Disordered Region (DISPRO)
*******************************************EIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV****************************************SSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVRFLKT*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTSTVSTSREILPPGPFGSPNAGASASASASFGHPQTAFSDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVRFLKTVSRPRRSCN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	415	2.2.26 [Sep-21-2011]
Q68F45	344	WD repeat domain phosphoi	N/A	no	0.775	0.936	0.410	2e-70
Q640T2	344	WD repeat domain phosphoi	yes	no	0.775	0.936	0.407	2e-70
Q5MNZ6	344	WD repeat domain phosphoi	yes	no	0.775	0.936	0.407	9e-70
Q5R7W0	344	WD repeat domain phosphoi	yes	no	0.775	0.936	0.407	2e-69
Q7ZUW6	344	WD repeat domain phosphoi	yes	no	0.773	0.933	0.414	4e-69
Q5ZL16	344	WD repeat domain phosphoi	yes	no	0.773	0.933	0.414	6e-69
Q9CR39	344	WD repeat domain phosphoi	yes	no	0.775	0.936	0.404	3e-68
Q9Y484	360	WD repeat domain phosphoi	no	no	0.744	0.858	0.347	1e-49
Q91VM3	360	WD repeat domain phosphoi	no	no	0.744	0.858	0.342	7e-49
Q6DCV0	355	WD repeat domain phosphoi	N/A	no	0.732	0.856	0.355	1e-48

>sp|Q68F45|WIPI3_XENLA WD repeat domain phosphoinositide-interacting protein 3 OS=Xenopus laevis GN=wdr45b PE=2 SV=1

 Score =  266 bits (681), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 149/363 (41%), Positives = 210/363 (57%), Gaps = 41/363 (11%)

Query: 47  LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAG 106
           L+   +NQD+GCFA G   GFR+YN +P KE  +++   GG   VEMLFRCN LALVG G
Sbjct: 13  LLYSGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVSYVEMLFRCNYLALVGGG 72

Query: 107 DNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFV-DLKLL 165
              +YPP KV+IWDD + + + E  F ++V++VKL RDRIVVVL+  I V++F  +   L
Sbjct: 73  KKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQL 132

Query: 166 HQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLIN--AHDSHIACFT 223
           H  ET  N +GLC L  +S+ S+LA PG   G V+I          ++  AH+  ++C  
Sbjct: 133 HVFETCYNPKGLCVLCPNSNNSLLAFPGAHTGHVQIVDLASTEKPPVDIPAHEGILSCIA 192

Query: 224 LTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKG 283
           L L G  +ATAS +GTLIRIF+T  G  +QE+RRG   A IY I  + +   + V+SD G
Sbjct: 193 LNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNEDASLICVSSDHG 252

Query: 284 TVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLP 343
           TVHIF+       ED       P ++ +    S+SF                      LP
Sbjct: 253 TVHIFA------AED-------PKRNKQSSLASASF----------------------LP 277

Query: 344 KYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVR 402
           KYFSS+WSF++F +P  +  I AFG++ N+V+ +  DGS+Y+  F+P   GE  +  Y +
Sbjct: 278 KYFSSKWSFSKFQVPSGSPCICAFGTEPNSVIAICADGSYYKFQFNP--KGECTRDVYAQ 335

Query: 403 FLK 405
           FL+
Sbjct: 336 FLE 338

Xenopus laevis (taxid: 8355)

>sp|Q640T2|WIPI3_XENTR WD repeat domain phosphoinositide-interacting protein 3 OS=Xenopus tropicalis GN=wdr45b PE=2 SV=1

 Score =  266 bits (680), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 148/363 (40%), Positives = 210/363 (57%), Gaps = 41/363 (11%)

Query: 47  LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAG 106
           L+   +NQD+GCFA G   GFR+YN +P KE  +++   GG   VEMLFRCN LALVG G
Sbjct: 13  LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVGYVEMLFRCNYLALVGGG 72

Query: 107 DNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFV-DLKLL 165
              +YPP KV+IWDD + + + E  F ++V++VKL RDRIVVVL+  I V++F  +   L
Sbjct: 73  KKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQL 132

Query: 166 HQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLIN--AHDSHIACFT 223
           H  ET  N +GLC L  +S+ S+LA PG   G V+I          ++  AH+  ++C  
Sbjct: 133 HVFETCYNPKGLCVLCPNSNNSLLAFPGAHTGHVQIVDLASTEKPPVDIPAHEGILSCIA 192

Query: 224 LTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKG 283
           L L G  +ATAS +GTLIRIF+T  G  +QE+RRG   A IY I  + +   + V+SD G
Sbjct: 193 LNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNEDASLICVSSDHG 252

Query: 284 TVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLP 343
           TVHIF+       ED       P ++ +    S+SF                      LP
Sbjct: 253 TVHIFA------AED-------PKRNKQSSLASASF----------------------LP 277

Query: 344 KYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVR 402
           KYFSS+WSF++F +P  +  + AFG++ N+V+ +  DGS+Y+  F+P   GE  +  Y +
Sbjct: 278 KYFSSKWSFSKFQVPSGSPCVCAFGTEPNSVIAICADGSYYKFQFNP--KGECTRDVYAQ 335

Query: 403 FLK 405
           FL+
Sbjct: 336 FLE 338

Xenopus tropicalis (taxid: 8364)

>sp|Q5MNZ6|WIPI3_HUMAN WD repeat domain phosphoinositide-interacting protein 3 OS=Homo sapiens GN=WDR45B PE=2 SV=2

 Score =  264 bits (675), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 148/363 (40%), Positives = 210/363 (57%), Gaps = 41/363 (11%)

Query: 47  LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAG 106
           L+   +NQD+GCFA G   GFR+YN +P KE  +++   GG   VEMLFRCN LALVG G
Sbjct: 13  LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVGHVEMLFRCNYLALVGGG 72

Query: 107 DNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFV-DLKLL 165
              +YPP KV+IWDD + + + E  F ++V++VKL RDRIVVVL+  I V++F  +   L
Sbjct: 73  KKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQL 132

Query: 166 HQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLIN--AHDSHIACFT 223
           H  ET  N +GLC L  +S+ S+LA PG   G V++          ++  AH+  ++C  
Sbjct: 133 HVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQLVDLASTEKPPVDIPAHEGVLSCIA 192

Query: 224 LTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKG 283
           L L G  +ATAS +GTLIRIF+T  G  +QE+RRG   A IY I  + +   + V+SD G
Sbjct: 193 LNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNQDASLICVSSDHG 252

Query: 284 TVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLP 343
           TVHIF+       ED       P ++ +    S+SF                      LP
Sbjct: 253 TVHIFA------AED-------PKRNKQSSLASASF----------------------LP 277

Query: 344 KYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVR 402
           KYFSS+WSF++F +P  +  I AFG++ N V+ +  DGS+Y+  F+P   GE ++  Y +
Sbjct: 278 KYFSSKWSFSKFQVPSGSPCICAFGTEPNAVIAICADGSYYKFLFNP--KGECIRDVYAQ 335

Query: 403 FLK 405
           FL+
Sbjct: 336 FLE 338

Homo sapiens (taxid: 9606)

>sp|Q5R7W0|WIPI3_PONAB WD repeat domain phosphoinositide-interacting protein 3 OS=Pongo abelii GN=WDR45B PE=2 SV=1

 Score =  263 bits (672), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 148/363 (40%), Positives = 210/363 (57%), Gaps = 41/363 (11%)

Query: 47  LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAG 106
           L+   +NQD+GCFA G   GFR+YN +P KE  +++   GG   VEMLFRCN LALVG G
Sbjct: 13  LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVGHVEMLFRCNYLALVGGG 72

Query: 107 DNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFV-DLKLL 165
              +YPP KV+IWDD + + + E  F ++V++VKL RDRIVVVL+  I V++F  +   L
Sbjct: 73  KKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQL 132

Query: 166 HQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLIN--AHDSHIACFT 223
           H  ET  N +GLC L  +S+ S+LA PG   G V++          ++  AH+  ++C  
Sbjct: 133 HVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQLVDLASTEKPPVDIPAHEGVLSCIA 192

Query: 224 LTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKG 283
           L L G  +ATAS +GTLIRIF+T  G  +QE+RRG   A IY I  + +   + V+SD G
Sbjct: 193 LNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINSNQDASLICVSSDHG 252

Query: 284 TVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLP 343
           TVHIF+       ED       P ++ +    S+SF                      LP
Sbjct: 253 TVHIFA------AED-------PKRNKQSSLASASF----------------------LP 277

Query: 344 KYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVR 402
           KYFSS+WSF++F +P  +  I AFG++ N V+ +  DGS+Y+  F+P   GE ++  Y +
Sbjct: 278 KYFSSKWSFSKFQVPSGSPCICAFGTEPNAVIAICADGSYYKFLFNP--KGECIRDVYAQ 335

Query: 403 FLK 405
           FL+
Sbjct: 336 FLE 338

Pongo abelii (taxid: 9601)

>sp|Q7ZUW6|WIPI3_DANRE WD repeat domain phosphoinositide-interacting protein 3 OS=Danio rerio GN=wdr45b PE=2 SV=1

 Score =  262 bits (669), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 151/364 (41%), Positives = 208/364 (57%), Gaps = 43/364 (11%)

Query: 47  LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAG 106
           L+   +NQD+GCFA G   GFR+YN +P KE  + +   GG   VEMLFRCN LALVG G
Sbjct: 13  LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKHEFLEGGVGHVEMLFRCNYLALVGGG 72

Query: 107 DNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFV-DLKLL 165
              +YPP KV+IWDD + + + E  F ++V++VKL RDRIVVVL+  I V++F  +   L
Sbjct: 73  KKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQL 132

Query: 166 HQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKL---INAHDSHIACF 222
           H  ET  N +GLC L  +S+ S+LA P    G V+I     N  K    I AH+  + C 
Sbjct: 133 HVFETCYNPKGLCVLCPNSNNSLLAFPATHSGHVQIVDLA-NTEKPPVDIPAHEGVLCCI 191

Query: 223 TLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK 282
           TL L G  +ATAS +GTLIRIF+T  G  +QE+RRG   A IY I  + +   + V+SD 
Sbjct: 192 TLNLQGTRIATASEKGTLIRIFDTSAGQLIQELRRGSQTANIYCINFNQDASLICVSSDH 251

Query: 283 GTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVL 342
           GTVHIF+       ED       P ++ +    S+SF                      L
Sbjct: 252 GTVHIFA------AED-------PKRNKQSSLASASF----------------------L 276

Query: 343 PKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDPVHGGEMLQQEYV 401
           PKYFSS+WSF++F +P  +  + AFG++ N V+ +  DGS+Y+  F+P   GE  +  Y 
Sbjct: 277 PKYFSSKWSFSKFQVPSGSPCVCAFGTEPNAVIAICADGSYYKFLFNP--KGECSRDVYA 334

Query: 402 RFLK 405
           +FL+
Sbjct: 335 QFLE 338

Danio rerio (taxid: 7955)

>sp|Q5ZL16|WIPI3_CHICK WD repeat domain phosphoinositide-interacting protein 3 OS=Gallus gallus GN=WDR45B PE=2 SV=1

 Score =  261 bits (668), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 151/364 (41%), Positives = 209/364 (57%), Gaps = 43/364 (11%)

Query: 47  LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAG 106
           L+   +NQD+GCFA G   GFR+YN +P KE  +++   GG   VEMLFRCN LALVG G
Sbjct: 13  LLYAGFNQDHGCFACGMENGFRVYNADPLKEKEKQEFPEGGVGHVEMLFRCNYLALVGGG 72

Query: 107 DNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFV-DLKLL 165
              +YPP KV+IWDD + + + E  F ++V++VKL RDRIVVVL+  I V++F  +   L
Sbjct: 73  KKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQL 132

Query: 166 HQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKL---INAHDSHIACF 222
           H  ET  N +GLC L  +S+ S+LA PG   G V+I     N  K    I AH+  ++C 
Sbjct: 133 HVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQIVDLA-NTEKPPVDIPAHEGILSCI 191

Query: 223 TLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK 282
            L L G  +ATAS +GTLIRIF+T  G  +QE+RRG   A IY I  + +   + V+SD 
Sbjct: 192 ALNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNQDASLICVSSDH 251

Query: 283 GTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVL 342
           GTVHIF+       ED       P ++ +    S+SF                      L
Sbjct: 252 GTVHIFA------AED-------PKRNKQSSLASASF----------------------L 276

Query: 343 PKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDPVHGGEMLQQEYV 401
           PKYFSS+WSF++F +P  +  I AFG++ N V+ +  DGS+Y+  F+    GE  +  Y 
Sbjct: 277 PKYFSSKWSFSKFQVPSGSPCICAFGTEPNAVLAICADGSYYKFLFN--QKGECSRDVYA 334

Query: 402 RFLK 405
           +FL+
Sbjct: 335 QFLE 338

Gallus gallus (taxid: 9031)

>sp|Q9CR39|WIPI3_MOUSE WD repeat domain phosphoinositide-interacting protein 3 OS=Mus musculus GN=Wdr45b PE=2 SV=2

 Score =  259 bits (662), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 147/363 (40%), Positives = 208/363 (57%), Gaps = 41/363 (11%)

Query: 47  LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAG 106
           L+   +NQD+GCFA G   GFR+YN +P KE  +++   GG   VEMLFRCN LALVG G
Sbjct: 13  LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVGHVEMLFRCNYLALVGGG 72

Query: 107 DNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFV-DLKLL 165
              +YPP KV+IWDD + + + E  F ++V++VKL RDRIVVVL+  I V++F  +   L
Sbjct: 73  KKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQL 132

Query: 166 HQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLIN--AHDSHIACFT 223
           H  ET  N +GLC L  +S+ S+LA PG   G V++          ++  AH+  ++C  
Sbjct: 133 HVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQLVDLASTEKPPVDIPAHEGVLSCIA 192

Query: 224 LTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKG 283
           L L G  +ATAS +GTLIRIF+T  G  +QE+RRG   A IY I  + +   + V+SD G
Sbjct: 193 LNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNQDASLICVSSDHG 252

Query: 284 TVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLP 343
           TVHIF+       ED       P ++ +    S+SF                      LP
Sbjct: 253 TVHIFA------AED-------PKRNKQSSLASASF----------------------LP 277

Query: 344 KYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVR 402
           KYFSS+WSF++F +P  +  I AFG++ N V+ +  DGS+Y+  F P   GE ++    +
Sbjct: 278 KYFSSKWSFSKFQVPSGSPCICAFGTEPNAVIAICADGSYYKFLFSP--KGECVRDVCAQ 335

Query: 403 FLK 405
           FL+
Sbjct: 336 FLE 338

Mus musculus (taxid: 10090)

>sp|Q9Y484|WIPI4_HUMAN WD repeat domain phosphoinositide-interacting protein 4 OS=Homo sapiens GN=WDR45 PE=2 SV=1

 Score =  197 bits (502), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 127/365 (34%), Positives = 185/365 (50%), Gaps = 56/365 (15%)

Query: 47  LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKS-GGFRIVEMLFRCNILALVGA 105
           + S+ +NQD  CF      G RIYN EP  E    D +  G   +VEML R N+LALVG 
Sbjct: 9   VTSLRFNQDQSCFCCAMETGVRIYNVEPLMEKGHLDHEQVGSMGLVEMLHRSNLLALVGG 68

Query: 106 GDNSQYPPTKVIIWDD------HQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSF 159
           G + ++    V+IWDD       + + + EF F   V SV++  D+IV+VL+++IYVYSF
Sbjct: 69  GSSPKFSEISVLIWDDAREGKDSKEKLVLEFTFTKPVLSVRMRHDKIVIVLKNRIYVYSF 128

Query: 160 VD-LKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKL------I 212
            D  + L + +T  N +GLC L       +L  PG + G +++                I
Sbjct: 129 PDNPRKLFEFDTRDNPKGLCDLCPSLEKQLLVFPGHKCGSLQLVDLASTKPGTSSAPFTI 188

Query: 213 NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPN 272
           NAH S IAC +L   G ++A+AS +GTLIR+F+T    +L E+RRG D A +Y I  S +
Sbjct: 189 NAHQSDIACVSLNQPGTVVASASQKGTLIRLFDTQSKEKLVELRRGTDPATLYCINFSHD 248

Query: 273 VQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPG 332
             +L  +SDKGTVHIF+L+                                   T  N  
Sbjct: 249 SSFLCASSDKGTVHIFALK----------------------------------DTRLNRR 274

Query: 333 SSLSFMRGVLP---KYFSSEWSFAQFHIPEVTHFIAAFGSQ-----NTVVIVSMDGSFYR 384
           S+L+ +  V P   +Y  S+WS A F +P  +  I AFG       N+V+ + +DG+F++
Sbjct: 275 SALARVGKVGPMIGQYVDSQWSLASFTVPAESACICAFGRNTSKNVNSVIAICVDGTFHK 334

Query: 385 CSFDP 389
             F P
Sbjct: 335 YVFTP 339

Homo sapiens (taxid: 9606)

>sp|Q91VM3|WIPI4_MOUSE WD repeat domain phosphoinositide-interacting protein 4 OS=Mus musculus GN=Wdr45 PE=2 SV=1

 Score =  195 bits (495), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 125/365 (34%), Positives = 184/365 (50%), Gaps = 56/365 (15%)

Query: 47  LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKS-GGFRIVEMLFRCNILALVGA 105
           + S+ +NQD  CF      G RIYN EP  E    D +  G   +VEML R N+LALVG 
Sbjct: 9   VTSLHFNQDQSCFCCAMETGVRIYNVEPLMEKGHLDHEQVGSVGLVEMLHRSNLLALVGG 68

Query: 106 GDNSQYPPTKVIIWDD------HQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSF 159
           G + ++    V+IWDD       + + + EF F   V +V++  D+IV+VL ++IYVYSF
Sbjct: 69  GSSPKFSEISVLIWDDAREGKDSKDKLVLEFTFTKPVLAVRMRHDKIVIVLRNRIYVYSF 128

Query: 160 VD-LKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKL------I 212
            D  + L + +T  N +GLC L       +L  PG + G +++                I
Sbjct: 129 PDSPRKLFEFDTRDNPKGLCDLCPSLEKQLLVFPGHKCGSLQLVDLASTKPGTSSAPFTI 188

Query: 213 NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPN 272
           NAH S +AC +L   G ++A+AS +GTLIR+F+T    +L E+RRG D A +Y I  S +
Sbjct: 189 NAHQSDVACVSLNQPGTVVASASQKGTLIRLFDTQSKEKLVELRRGTDPATLYCINFSHD 248

Query: 273 VQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPG 332
             +L  +SDKGTVHIF+L+                                   T  N  
Sbjct: 249 SSFLCASSDKGTVHIFALK----------------------------------DTRLNRR 274

Query: 333 SSLSFMRGVLP---KYFSSEWSFAQFHIPEVTHFIAAFGSQ-----NTVVIVSMDGSFYR 384
           S+L+ +  V P   +Y  S+WS A F +P  +  I AFG       N+V+ + +DG+F++
Sbjct: 275 SALARVGKVGPMIGQYVDSQWSLASFTVPAESACICAFGRNTSKNVNSVIAICVDGTFHK 334

Query: 385 CSFDP 389
             F P
Sbjct: 335 YVFTP 339

Mus musculus (taxid: 10090)

>sp|Q6DCV0|WIPI4_XENLA WD repeat domain phosphoinositide-interacting protein 4 OS=Xenopus laevis GN=wdr45 PE=2 SV=1

 Score =  194 bits (492), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 127/357 (35%), Positives = 180/357 (50%), Gaps = 53/357 (14%)

Query: 52  WNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKS-GGFRIVEMLFRCNILALVGAGDNSQ 110
           +NQD  CF      G RI+N EP  E    D +  G    VEML RCN+LALVG G N +
Sbjct: 12  FNQDQSCFCCAMETGVRIFNIEPLMEKGHLDQEQVGSVGQVEMLHRCNLLALVGGGSNPK 71

Query: 111 YPPTKVIIWDDH---QSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKL-LH 166
           +    V+IWDD    + + + EF F   V SV+L  D+IV+ L+++IYVYSF D    L 
Sbjct: 72  FSDISVLIWDDSRDGKDKLVLEFTFTKPVLSVRLRSDKIVIALKNRIYVYSFPDNPTKLF 131

Query: 167 QIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHF-----GLNMIKL-INAHDSHIA 220
           + +T  N +GLC L       +L  PG + G +++        G +     INAH S + 
Sbjct: 132 EFDTRDNPKGLCDLCPSLEKQLLIFPGHKCGSLQLVDLCNAKPGSSSAPFTINAHQSELG 191

Query: 221 CFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVAS 280
           C  +   G L+A+AS +GTLIR+F+T    +L E+RRG D A +Y I  S +  +L  +S
Sbjct: 192 CLAINQQGTLVASASRKGTLIRLFDTQTREQLVELRRGTDPATLYCINFSHDSSFLCSSS 251

Query: 281 DKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRG 340
           DKGTVHIF+L+                                   T  N  S+L+ +  
Sbjct: 252 DKGTVHIFALK----------------------------------DTKLNRRSALARVGK 277

Query: 341 VLP---KYFSSEWSFAQFHIPEVTHFIAAFGSQ-----NTVVIVSMDGSFYRCSFDP 389
           V P   +Y  S+WS A F +P  +  I AFG       N+V+ V +DG+F++  F P
Sbjct: 278 VGPMIGQYVDSQWSLASFTVPAESACICAFGKNTSKNVNSVIAVCVDGTFHKYVFTP 334

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	415
255559755	598	WD-repeat protein, putative [Ricinus com	0.971	0.673	0.814	0.0
224128009	411	predicted protein [Populus trichocarpa]	0.983	0.992	0.810	0.0
356509110	419	PREDICTED: WD repeat domain phosphoinosi	0.927	0.918	0.788	0.0
356516207	406	PREDICTED: WD repeat domain phosphoinosi	0.966	0.987	0.754	1e-177
297824019	404	hypothetical protein ARALYDRAFT_321769 [	0.973	1.0	0.729	1e-175
30688413	393	ATG18c-like protein [Arabidopsis thalian	0.946	1.0	0.731	1e-175
242056259	417	hypothetical protein SORBIDRAFT_03g00465	0.990	0.985	0.709	1e-174
225448351	417	PREDICTED: WD repeat domain phosphoinosi	0.922	0.918	0.770	1e-174
308080528	417	hypothetical protein [Zea mays] gi|23801	0.995	0.990	0.710	1e-173
297816968	391	hypothetical protein ARALYDRAFT_486086 [	0.934	0.992	0.734	1e-173

>gi|255559755|ref|XP_002520897.1| WD-repeat protein, putative [Ricinus communis] gi|223540028|gb|EEF41606.1| WD-repeat protein, putative [Ricinus communis]

 Score =  682 bits (1759), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/416 (81%), Positives = 363/416 (87%), Gaps = 13/416 (3%)

Query: 1   MTSTVSTSREILPP---GPFGSPNAGASASASASFGHPQTAFSDVDEIELISVSWNQDYG 57
           MTSTVSTSR  LPP   G F SPN  AS S       PQ   SD  E++L+SVSWNQDYG
Sbjct: 191 MTSTVSTSRRFLPPIGHGSFESPNIIASGSLVP----PQ---SDSVEVDLLSVSWNQDYG 243

Query: 58  CFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI 117
           CFAAGT+CGFRIYNCEPFKETFRRDLKSGGF+IVEMLFRCNILALVG   NSQ+PP KV+
Sbjct: 244 CFAAGTNCGFRIYNCEPFKETFRRDLKSGGFKIVEMLFRCNILALVGRDSNSQHPPNKVL 303

Query: 118 IWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGL 177
           IWDDHQSRCIGEF+FRS+VR+VKL RDRIVVVLEHKIYVYSF+DLKLLHQIETLAN RGL
Sbjct: 304 IWDDHQSRCIGEFSFRSEVRAVKLRRDRIVVVLEHKIYVYSFMDLKLLHQIETLANPRGL 363

Query: 178 CCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTR 237
           CCLSHHS+TSVLACPGL RGQVRIEHFGLN++KLINAHDSH+AC TLT+DGLLLATAS R
Sbjct: 364 CCLSHHSNTSVLACPGLHRGQVRIEHFGLNVMKLINAHDSHLACITLTMDGLLLATASIR 423

Query: 238 GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGE 297
           GTLIRIFNT+DGTRLQEVRRGVDRA+IY IALS NVQWLAV+SDKGTVHIFSLRVRV GE
Sbjct: 424 GTLIRIFNTMDGTRLQEVRRGVDRADIYGIALSTNVQWLAVSSDKGTVHIFSLRVRVAGE 483

Query: 298 DSSSSLSTPSQSTELLNHSSS--FDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQF 355
           D SS  S+P Q   L N +SS   D LISPST ANPGSSLSFMRGVLPKYFSSEWSFAQF
Sbjct: 484 DPSSQ-SSPIQGPALQNQNSSNFLDALISPSTSANPGSSLSFMRGVLPKYFSSEWSFAQF 542

Query: 356 HIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVRFLKTVSRPR 411
           H+PE T FIAAFGSQNTV+IV MDGSFYRCSFDPVHGGEM+QQEYVRFLKT S PR
Sbjct: 543 HLPEDTQFIAAFGSQNTVIIVGMDGSFYRCSFDPVHGGEMMQQEYVRFLKTESTPR 598

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128009|ref|XP_002329232.1| predicted protein [Populus trichocarpa] gi|222871013|gb|EEF08144.1| predicted protein [Populus trichocarpa]

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/412 (81%), Positives = 363/412 (88%), Gaps = 4/412 (0%)

Query: 1   MTSTVSTSREILPPGPFGSPNAGASASASASFGHPQTAFSDVDEIELISVSWNQDYGCFA 60
           M+STVSTS+  LP    GS  + ++  AS S G P+   +  +E+ELIS SWNQDYGCFA
Sbjct: 1   MSSTVSTSQGFLPQARHGSFES-SNVLASGSLGQPELESNGSNEVELISASWNQDYGCFA 59

Query: 61  AGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD 120
           AGTS GFRIYNCEPFKETFRRDLKSGGF+IVEMLFRCNILALVGA  NSQYPP KV+IWD
Sbjct: 60  AGTSHGFRIYNCEPFKETFRRDLKSGGFKIVEMLFRCNILALVGADANSQYPPNKVLIWD 119

Query: 121 DHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGLCCL 180
           DHQSRCIGEF+FRS+VRSVKL RDRIVVVLEHK+YVY+F+DLKLLHQIETLAN RGLCCL
Sbjct: 120 DHQSRCIGEFSFRSEVRSVKLRRDRIVVVLEHKLYVYNFMDLKLLHQIETLANPRGLCCL 179

Query: 181 SHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTL 240
           SH S+T VLACPGL RGQVRIEHFGLN++KLINAHDSHIAC TLT+DGLLLATASTRGTL
Sbjct: 180 SHDSNTFVLACPGLHRGQVRIEHFGLNVMKLINAHDSHIACLTLTMDGLLLATASTRGTL 239

Query: 241 IRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSS 300
           IRIFNT+DGTRLQEVRRGVDRAEIY IALS NVQWLAV+SDKGTVHIFSLRVRV GEDSS
Sbjct: 240 IRIFNTMDGTRLQEVRRGVDRAEIYGIALSRNVQWLAVSSDKGTVHIFSLRVRVAGEDSS 299

Query: 301 SSLSTPSQSTELL--NHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIP 358
           S LS P+Q   LL  N SSS D LISPST ANPGSSLSFMRGVLPKYFSSEWSFAQFH+P
Sbjct: 300 SHLS-PAQGPALLEQNSSSSLDGLISPSTSANPGSSLSFMRGVLPKYFSSEWSFAQFHLP 358

Query: 359 EVTHFIAAFGSQNTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVRFLKTVSRP 410
           E T +IAAF SQNTV+IV M+GSFYRCSFDPVHGG+MLQQEYVRFL+T SRP
Sbjct: 359 EDTQYIAAFASQNTVIIVGMNGSFYRCSFDPVHGGQMLQQEYVRFLQTESRP 410

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509110|ref|XP_003523295.1| PREDICTED: WD repeat domain phosphoinositide-interacting protein 3-like [Glycine max]

 Score =  639 bits (1648), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/397 (78%), Positives = 342/397 (86%), Gaps = 12/397 (3%)

Query: 19  SPNAGASASASASFGHPQTAFSDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKET 78
           SPN+GAS     SF  P    ++ DE +L+S+SWNQDYGCFAAGTS GFRIYNCEP KET
Sbjct: 31  SPNSGAS-----SFTQPIADMNENDETDLLSISWNQDYGCFAAGTSHGFRIYNCEPCKET 85

Query: 79  FRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRS 138
           FRRDLKSGGF+IVEMLFRCNILALVGA  NS YPP KV+IWDDHQSRCIGEF FRSDVR 
Sbjct: 86  FRRDLKSGGFKIVEMLFRCNILALVGAVANSHYPPNKVLIWDDHQSRCIGEFTFRSDVRG 145

Query: 139 VKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQ 198
           VKL RDRIVVVLEHKIYVY+F DLKLLHQIETLAN RGLCCLSHHS+T VLACPGL +G 
Sbjct: 146 VKLRRDRIVVVLEHKIYVYNFTDLKLLHQIETLANPRGLCCLSHHSNTFVLACPGLHKGH 205

Query: 199 VRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRG 258
           VR+EHFGLN+ KLINAHDS IACFTLTLDGLLLATAS +GTLIRIFNT+DG+RLQEVRRG
Sbjct: 206 VRVEHFGLNVTKLINAHDSQIACFTLTLDGLLLATASVKGTLIRIFNTMDGSRLQEVRRG 265

Query: 259 VDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPS--QSTELL--N 314
           VDRAEI SIALSPNVQWLA +SD+GTVH+FSLRVRV GED   SL+ P+  Q   L   N
Sbjct: 266 VDRAEINSIALSPNVQWLAASSDRGTVHVFSLRVRVSGED---SLTQPNAFQGPALFHQN 322

Query: 315 HSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVV 374
            SSS D LISP+TGANP SSLSFMRGVLPKYFSSEWSFAQFH+PE THFI AFGSQN+V+
Sbjct: 323 SSSSLDPLISPNTGANPNSSLSFMRGVLPKYFSSEWSFAQFHLPEYTHFIVAFGSQNSVI 382

Query: 375 IVSMDGSFYRCSFDPVHGGEMLQQEYVRFLKTVSRPR 411
           IV MDGSFYRCSFD VHGGE++QQEYVRFLK  +RP+
Sbjct: 383 IVGMDGSFYRCSFDQVHGGEVVQQEYVRFLKFENRPK 419

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516207|ref|XP_003526787.1| PREDICTED: WD repeat domain phosphoinositide-interacting protein 3-like [Glycine max]

 Score =  626 bits (1614), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 314/416 (75%), Positives = 345/416 (82%), Gaps = 15/416 (3%)

Query: 1   MTSTVSTSREILPPGPFGS---PNAGASASASASFGHPQTAFSDVDEIELISVSWNQDYG 57
           M+S+V TS+ I      GS   PN+GAS+S    F  P    ++ +E +L+S+SWNQDYG
Sbjct: 1   MSSSVLTSQGIFTTSRIGSSESPNSGASSS----FTQPMEDMNENEETDLLSISWNQDYG 56

Query: 58  CFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI 117
           CFAAGTS GFRIYNCEP KETFRRDLKSGGF+IVEMLFRCNILALVGA  NS YPP KV+
Sbjct: 57  CFAAGTSHGFRIYNCEPCKETFRRDLKSGGFKIVEMLFRCNILALVGAVANSHYPPNKVL 116

Query: 118 IWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGL 177
           IWDDHQSRCIGEF FRSDVR VKL RDRIVVVLEHKIYVY+F DLKLLHQIETLAN RGL
Sbjct: 117 IWDDHQSRCIGEFTFRSDVRGVKLRRDRIVVVLEHKIYVYNFTDLKLLHQIETLANPRGL 176

Query: 178 CCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTR 237
           CCLSH+S+T VLACPGL +GQVR+EHFGLN+ KLINAHDS IACFTLTLDGLLLATAS +
Sbjct: 177 CCLSHYSNTFVLACPGLHKGQVRVEHFGLNVTKLINAHDSQIACFTLTLDGLLLATASVK 236

Query: 238 GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGE 297
           GTLIRIFNT+DG+RLQEVRRGVDRAEI SIALSPNVQWLA +SDKGTVH+FSLRVRV GE
Sbjct: 237 GTLIRIFNTMDGSRLQEVRRGVDRAEINSIALSPNVQWLAASSDKGTVHVFSLRVRVFGE 296

Query: 298 DSSSSLSTPSQSTELL--NHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQF 355
           DS +      Q   L   N SSS D LISP+TGANP SSLSFMRGVLPKYFSSEWSFAQF
Sbjct: 297 DSVTQ-PNAVQGPALFHQNSSSSLDPLISPNTGANPNSSLSFMRGVLPKYFSSEWSFAQF 355

Query: 356 HIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVRFLKTVSRPR 411
           H+PE T FI AFGSQN+V+IV MDG     SFD VHGGEM+QQEYVRFLK  +RPR
Sbjct: 356 HLPEYTPFIVAFGSQNSVIIVGMDG-----SFDQVHGGEMVQQEYVRFLKFENRPR 406

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297824019|ref|XP_002879892.1| hypothetical protein ARALYDRAFT_321769 [Arabidopsis lyrata subsp. lyrata] gi|297325731|gb|EFH56151.1| hypothetical protein ARALYDRAFT_321769 [Arabidopsis lyrata subsp. lyrata]

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 300/411 (72%), Positives = 347/411 (84%), Gaps = 7/411 (1%)

Query: 1   MTSTVSTSREILPPGPFGSPNAGASASASASFGHPQTAFSDVDEIELISVSWNQDYGCFA 60
           M+STVS  + IL  G +    +G  + ++ + G    + ++ DE EL+SV WNQD  CFA
Sbjct: 1   MSSTVSNPQGILQQGGY----SGHDSRSNITSGSESESINN-DEAELVSVCWNQDSSCFA 55

Query: 61  AGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD 120
           AGTS GFRIYNC+PFKETFRR+LK+GGF+IVEMLFR NILALVG G NSQYP  KV+IWD
Sbjct: 56  AGTSHGFRIYNCQPFKETFRRELKNGGFKIVEMLFRSNILALVGGGANSQYPSNKVLIWD 115

Query: 121 DHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGLCCL 180
           DHQSRCI EFAFRS++R+VKL RDRIVVVLEHKIYVY+F+DL+LLHQIET AN RGLCCL
Sbjct: 116 DHQSRCISEFAFRSEIRAVKLRRDRIVVVLEHKIYVYNFMDLRLLHQIETQANPRGLCCL 175

Query: 181 SHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTL 240
           SHHS+TSVLACPGL RG++R+EHFGLNM+++INAHDS IAC TLTLDGLLLATAST+GTL
Sbjct: 176 SHHSNTSVLACPGLHRGEIRVEHFGLNMVQIINAHDSSIACMTLTLDGLLLATASTKGTL 235

Query: 241 IRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSS 300
           IRIFNT+DGTRLQEVRRGVDRA+IYSIALSPNVQWLAV+SDKGTVHIFSLRVRVVGEDS 
Sbjct: 236 IRIFNTMDGTRLQEVRRGVDRADIYSIALSPNVQWLAVSSDKGTVHIFSLRVRVVGEDSY 295

Query: 301 SSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEV 360
           S+ +    + +   +S+S   L+SP+TG NPGSSLSFMRGVLPKYFSSEWS+AQFH+ EV
Sbjct: 296 STENAALLTQQ--TYSTSLQGLVSPTTGTNPGSSLSFMRGVLPKYFSSEWSYAQFHVSEV 353

Query: 361 THFIAAFGSQNTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVRFLKTVSRPR 411
           T F AAFGS NTV I+ MDGSFYRCSFDPV+GGEM Q EY  FLKT +R R
Sbjct: 354 TQFFAAFGSNNTVAIIGMDGSFYRCSFDPVNGGEMGQLEYFHFLKTDNRRR 404

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30688413|ref|NP_181613.2| ATG18c-like protein [Arabidopsis thaliana] gi|42571153|ref|NP_973650.1| ATG18c-like protein [Arabidopsis thaliana] gi|26450478|dbj|BAC42353.1| unknown protein [Arabidopsis thaliana] gi|114050621|gb|ABI49460.1| At2g40810 [Arabidopsis thaliana] gi|330254788|gb|AEC09882.1| ATG18c-like protein [Arabidopsis thaliana] gi|330254789|gb|AEC09883.1| ATG18c-like protein [Arabidopsis thaliana]

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 300/410 (73%), Positives = 342/410 (83%), Gaps = 17/410 (4%)

Query: 1   MTSTVSTSREILPPGPFGSPNAGASASASASFGHPQTAFSDVDEIELISVSWNQDYGCFA 60
           M+STVS  + IL PG               SF  P++     +E EL+SV WNQD  CFA
Sbjct: 1   MSSTVSNPQGILQPG---------------SFLLPESESMKKEEAELVSVCWNQDSSCFA 45

Query: 61  AGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD 120
           AGTS GFRIYNCEPFKETFRR+LK GGF+IVEMLFR NILALVG G NSQYP +KV+IWD
Sbjct: 46  AGTSHGFRIYNCEPFKETFRRELKDGGFKIVEMLFRSNILALVGGGPNSQYPSSKVLIWD 105

Query: 121 DHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGLCCL 180
           DHQSRCI EFAFRS++R+VKL RDRIVVVLEHKIYVY+F+DL+LLHQIET AN RGLCCL
Sbjct: 106 DHQSRCISEFAFRSEIRAVKLRRDRIVVVLEHKIYVYNFMDLRLLHQIETQANPRGLCCL 165

Query: 181 SHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTL 240
           SHHS+TSVLACPGL RG++R+EHFGLNM+++INAHDS IAC TLTLDGLLLATAST+GTL
Sbjct: 166 SHHSNTSVLACPGLNRGEIRVEHFGLNMVQIINAHDSSIACMTLTLDGLLLATASTKGTL 225

Query: 241 IRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSS 300
           IRIFNT+DGTRLQEVRRGVDRA+IYSIALSPNVQWLAV+SDKGTVHIFSLRVRVVGEDS 
Sbjct: 226 IRIFNTMDGTRLQEVRRGVDRADIYSIALSPNVQWLAVSSDKGTVHIFSLRVRVVGEDSY 285

Query: 301 SSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEV 360
           S+ +    + +  N+S+S   L+SP+ G NPGSSLSFMRGVLPKYFSSEWS+AQFH+ EV
Sbjct: 286 STENGALLTQQ--NYSNSLQGLVSPTIGTNPGSSLSFMRGVLPKYFSSEWSYAQFHVSEV 343

Query: 361 THFIAAFGSQNTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVRFLKTVSRP 410
           T F AAFGS NTV I+ MDGSFYRCSFDPV+GGEM Q EY+ F+K  +RP
Sbjct: 344 TQFFAAFGSNNTVAIIGMDGSFYRCSFDPVNGGEMGQLEYIHFMKMDNRP 393

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242056259|ref|XP_002457275.1| hypothetical protein SORBIDRAFT_03g004650 [Sorghum bicolor] gi|241929250|gb|EES02395.1| hypothetical protein SORBIDRAFT_03g004650 [Sorghum bicolor]

 Score =  616 bits (1588), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 295/416 (70%), Positives = 347/416 (83%), Gaps = 5/416 (1%)

Query: 1   MTSTVSTSREILPPGPFGSPNAGASASASASFGHPQTAFSDVDEIELISVSWNQDYGCFA 60
           M+S VSTSR + PPG  G+  +  +    A    P+    D  E+ L+SV+WNQD GCFA
Sbjct: 1   MSSQVSTSRGLHPPGKLGTFESPHAWPLPAPTAQPEAGRGDDQEVRLLSVAWNQDCGCFA 60

Query: 61  AGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD 120
           AGTS GFRI+NCEPFKETFRRDLKSGGF IVEMLFRCNILALVG G N QYPP KV+IWD
Sbjct: 61  AGTSNGFRIFNCEPFKETFRRDLKSGGFGIVEMLFRCNILALVGGGSNVQYPPNKVMIWD 120

Query: 121 DHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGLCCL 180
           DHQSRCIGEFAFRSDVR+VKL++D IV+VLE KI+VY+F DLKLL+QI+TL+N +GLCCL
Sbjct: 121 DHQSRCIGEFAFRSDVRAVKLAKDYIVIVLERKIFVYNFTDLKLLYQIDTLSNPKGLCCL 180

Query: 181 SHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTL 240
           SHHS+TSVLACPG+ +G VR+EHFGL M K I AHDSHI+C +LT+DGLLLATAS++GTL
Sbjct: 181 SHHSNTSVLACPGVHQGHVRVEHFGLKMAKTIPAHDSHISCMSLTMDGLLLATASSKGTL 240

Query: 241 IRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSS 300
           IRIFNT+DGTRLQEVRRG+D+AEIYSIALSPNVQWLAV+SDKGTVHIFSLRVRV GED+S
Sbjct: 241 IRIFNTMDGTRLQEVRRGLDKAEIYSIALSPNVQWLAVSSDKGTVHIFSLRVRVAGEDAS 300

Query: 301 S---SLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHI 357
           S   +L  P    +  N SSS D LI  +TG+N  SSLSFMRG+LPKYFSSEWSFAQFH+
Sbjct: 301 SEQRALEGPRMDHQ--NSSSSIDPLIQANTGSNASSSLSFMRGILPKYFSSEWSFAQFHL 358

Query: 358 PEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVRFLKTVSRPRRS 413
           PEVT +I AFG+QNTV++V +DGSFYRCSFD V+GG+MLQ+EY RFLK+ + P R+
Sbjct: 359 PEVTRYIVAFGAQNTVMMVGLDGSFYRCSFDQVNGGQMLQKEYFRFLKSDNPPFRT 414

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448351|ref|XP_002267266.1| PREDICTED: WD repeat domain phosphoinositide-interacting protein 3-like [Vitis vinifera]

 Score =  615 bits (1587), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 296/384 (77%), Positives = 332/384 (86%), Gaps = 1/384 (0%)

Query: 23  GASASASASFGHPQTAFSDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRD 82
           G+++    SFG     F+D DE  L+SVSWNQD+GCFAAGT+ GFRIY+C+PFKE FRRD
Sbjct: 28  GSNSGTPGSFGQSVPEFNDTDETGLLSVSWNQDHGCFAAGTTHGFRIYSCDPFKEIFRRD 87

Query: 83  LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLS 142
           LKSGGF IVEMLFR NILALVGAG NSQYPP+KVIIWDD++ RCIGEF+FRSDVR+VKL 
Sbjct: 88  LKSGGFGIVEMLFRSNILALVGAGTNSQYPPSKVIIWDDYERRCIGEFSFRSDVRAVKLR 147

Query: 143 RDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIE 202
           RDRIVVV+EHKIYVY+F DLKLL QIETLAN RGLCCLSHHS+T VLACPGLQRG VRIE
Sbjct: 148 RDRIVVVVEHKIYVYNFTDLKLLQQIETLANPRGLCCLSHHSNTFVLACPGLQRGLVRIE 207

Query: 203 HFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRA 262
           HFGLNM KLI AHDSH+AC TLT+DGLLLA+AS +GTLIRIFNT+DGTRLQEVRRG D A
Sbjct: 208 HFGLNMTKLIKAHDSHVACLTLTMDGLLLASASMKGTLIRIFNTMDGTRLQEVRRGSDNA 267

Query: 263 EIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSS-SLSTPSQSTELLNHSSSFDT 321
           EIYSIALSPNVQWLAV+S+KGTVHIF+LRVRVVGEDSS+ S++    +    N S+S D 
Sbjct: 268 EIYSIALSPNVQWLAVSSEKGTVHIFNLRVRVVGEDSSNHSITAQGPAPFYRNSSNSLDA 327

Query: 322 LISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGS 381
           LISP+ GANPGSSLSFM+G LPKYFSSEWSFAQF +PE T FIA FGSQNTV+IV MDGS
Sbjct: 328 LISPNAGANPGSSLSFMKGFLPKYFSSEWSFAQFRVPEDTQFIATFGSQNTVIIVGMDGS 387

Query: 382 FYRCSFDPVHGGEMLQQEYVRFLK 405
           FYRCSFD ++GGEMLQQEY  FLK
Sbjct: 388 FYRCSFDHLNGGEMLQQEYHSFLK 411

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|308080528|ref|NP_001183244.1| hypothetical protein [Zea mays] gi|238010282|gb|ACR36176.1| unknown [Zea mays] gi|414876159|tpg|DAA53290.1| TPA: hypothetical protein ZEAMMB73_220448 [Zea mays]

 Score =  615 bits (1585), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 294/414 (71%), Positives = 347/414 (83%), Gaps = 1/414 (0%)

Query: 1   MTSTVSTSREILPPGPFGSPNAGASASASASFGHPQTAFSDVDEIELISVSWNQDYGCFA 60
           M+S VSTS  + PPG  G+  +  +   SA    P+    D  E+ L+SV+WNQD GCFA
Sbjct: 1   MSSQVSTSHGLHPPGKLGTFESPHAWPLSAPTAQPEAGRGDDQEVRLLSVAWNQDCGCFA 60

Query: 61  AGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD 120
           AGTS GFRI+NC+PFKETFRRDLKSGGF IVEMLFRCNILALVG G N QYPP KV+IWD
Sbjct: 61  AGTSNGFRIFNCDPFKETFRRDLKSGGFGIVEMLFRCNILALVGGGSNVQYPPNKVMIWD 120

Query: 121 DHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGLCCL 180
           DHQSRCIGEFAFRSDVR+VKL++D IV+VLE KI+VY+F DLKLL+QI+TL+N +GLCCL
Sbjct: 121 DHQSRCIGEFAFRSDVRAVKLAKDYIVIVLERKIFVYNFTDLKLLYQIDTLSNPKGLCCL 180

Query: 181 SHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTL 240
           SH+S+TSVLACPG+ +G VR+EHFGL M K I+AHDSHI+C +LT+DGLLLATAST+GTL
Sbjct: 181 SHNSNTSVLACPGVHQGHVRVEHFGLKMAKTISAHDSHISCMSLTMDGLLLATASTKGTL 240

Query: 241 IRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSS 300
           IRIFNT+DGTRLQEVRRG+DRAEIYSIA+SPNVQWLAV+SDKGTVHIFSLRVRV GED+S
Sbjct: 241 IRIFNTMDGTRLQEVRRGLDRAEIYSIAVSPNVQWLAVSSDKGTVHIFSLRVRVAGEDAS 300

Query: 301 SSLSTP-SQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPE 359
           +   T  S   +  + SSS D LI  +TG+N  SSLSFMRG+LPKYFSSEWSFAQFH+PE
Sbjct: 301 NEQRTAESPRMDHQSSSSSIDPLIQANTGSNASSSLSFMRGILPKYFSSEWSFAQFHLPE 360

Query: 360 VTHFIAAFGSQNTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVRFLKTVSRPRRS 413
           VT +I AFG+QNTV++V +DGSFYRCSFD V+GG+MLQ+EY RFLK+ S P RS
Sbjct: 361 VTRYIVAFGAQNTVMMVGLDGSFYRCSFDQVNGGQMLQKEYFRFLKSDSPPLRS 414

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297816968|ref|XP_002876367.1| hypothetical protein ARALYDRAFT_486086 [Arabidopsis lyrata subsp. lyrata] gi|297322205|gb|EFH52626.1| hypothetical protein ARALYDRAFT_486086 [Arabidopsis lyrata subsp. lyrata]

 Score =  613 bits (1580), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 296/403 (73%), Positives = 339/403 (84%), Gaps = 15/403 (3%)

Query: 9   REILPPGPFGSPNAGASASASASFGHPQTAFSDVDEIELISVSWNQDYGCFAAGTSCGFR 68
           R    PG + S N       S SFG P   F + DE EL+SVSWNQDY CFAAGTS GFR
Sbjct: 4   RRNFQPGGYDSRNT----FTSGSFGPPD--FGESDEAELVSVSWNQDYSCFAAGTSHGFR 57

Query: 69  IYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIG 128
           IYNCEPFKETFRR+LK GGF+IVEMLFR NILALVG G NSQYP  KV+IWDDHQSRCI 
Sbjct: 58  IYNCEPFKETFRRELKGGGFKIVEMLFRSNILALVGGGPNSQYPSNKVLIWDDHQSRCIS 117

Query: 129 EFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSV 188
           EF FRS++R+VKL RDRIVVVLEHKIYVY+F+DL+LLHQIE LAN RGLCCLSHH +TSV
Sbjct: 118 EFTFRSEIRAVKLRRDRIVVVLEHKIYVYNFMDLRLLHQIENLANPRGLCCLSHHMNTSV 177

Query: 189 LACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVD 248
           LACPG++RG+VR+EHFGLNM+++INAHDS++AC T+TLDGLLLATAST+GTLIRIFNT+D
Sbjct: 178 LACPGIRRGEVRVEHFGLNMVQIINAHDSNLACMTMTLDGLLLATASTKGTLIRIFNTMD 237

Query: 249 GTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQ 308
           GTRLQEVRRGVDRA+IYSIALSPN+QWLAV+SDKGTVHIFSLRVRV+GED        + 
Sbjct: 238 GTRLQEVRRGVDRADIYSIALSPNMQWLAVSSDKGTVHIFSLRVRVIGED--------AY 289

Query: 309 STELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFG 368
           STE    S+S   L+SP++GANPGSSLSF+RGVLPKYFSSEWSFAQFH+PEVT + AAFG
Sbjct: 290 STEHETSSNSMQPLVSPASGANPGSSLSFLRGVLPKYFSSEWSFAQFHVPEVTQYFAAFG 349

Query: 369 SQNTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVRFLKTVSRPR 411
           +QNT+ I+ MDGSFYRC+FDPV+GGEM Q E+  FLK  S PR
Sbjct: 350 AQNTIAIIGMDGSFYRCNFDPVNGGEMTQLEHFHFLKPDS-PR 391

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	415
TAIR|locus:2058450	393	ATG18C "AT2G40810" [Arabidopsi	0.901	0.951	0.726	2.3e-149
TAIR|locus:2102614	391	ATG18D "homolog of yeast autop	0.877	0.930	0.723	4.3e-148
UNIPROTKB|Q5VQF8	417	OJ1276_B06.19 "Putative unchar	0.995	0.990	0.649	4e-145
TAIR|locus:2081705	425	AtATG18a "autophagy 18a" [Arab	0.592	0.578	0.643	4.3e-113
UNIPROTKB|Q8LR61	457	P0423A12.30 "Putative WD repea	0.6	0.544	0.602	5.6e-109
UNIPROTKB|Q0DKE9	382	Os05g0169200 "Os05g0169200 pro	0.879	0.955	0.555	1e-107
TAIR|locus:2156779	374	G18E "AT5G05150" [Arabidopsis	0.614	0.681	0.486	3.5e-86
DICTYBASE|DDB_G0282581	350	wdr45l "WD repeat domain phosp	0.583	0.691	0.495	5.3e-73
UNIPROTKB|Q640T2	344	wdr45b "WD repeat domain phosp	0.585	0.706	0.434	4.8e-64
UNIPROTKB|Q5MNZ6	344	WDR45B "WD repeat domain phosp	0.585	0.706	0.430	9.9e-64

TAIR|locus:2058450 ATG18C "AT2G40810" [Arabidopsis thaliana (taxid:3702)]

 Score = 1458 (518.3 bits), Expect = 2.3e-149, P = 2.3e-149
 Identities = 273/376 (72%), Positives = 310/376 (82%)

Query:    35 PQTAFSDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEML 94
             P++     +E EL+SV WNQD  CFAAGTS GFRIYNCEPFKETFRR+LK GGF+IVEML
Sbjct:    20 PESESMKKEEAELVSVCWNQDSSCFAAGTSHGFRIYNCEPFKETFRRELKDGGFKIVEML 79

Query:    95 FRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKI 154
             FR NILALVG G NSQYP +KV+IWDDHQSRCI EFAFRS++R+VKL RDRIVVVLEHKI
Sbjct:    80 FRSNILALVGGGPNSQYPSSKVLIWDDHQSRCISEFAFRSEIRAVKLRRDRIVVVLEHKI 139

Query:   155 YVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINA 214
             YVY+F+DL+LLHQIET AN RGLCCLSHHS+TSVLACPGL RG++R+EHFGLNM+++INA
Sbjct:   140 YVYNFMDLRLLHQIETQANPRGLCCLSHHSNTSVLACPGLNRGEIRVEHFGLNMVQIINA 199

Query:   215 HDSHIACFXXXXXXXXXXXXXXRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQ 274
             HDS IAC               +GTLIRIFNT+DGTRLQEVRRGVDRA+IYSIALSPNVQ
Sbjct:   200 HDSSIACMTLTLDGLLLATASTKGTLIRIFNTMDGTRLQEVRRGVDRADIYSIALSPNVQ 259

Query:   275 WLAVASDKGTVHIFSLRVRVVGEDXXXXXXXXXXXTELLNHSSSFDTLISPSTGANPGSS 334
             WLAV+SDKGTVHIFSLRVRVVGED            +  N+S+S   L+SP+ G NPGSS
Sbjct:   260 WLAVSSDKGTVHIFSLRVRVVGEDSYSTENGALLTQQ--NYSNSLQGLVSPTIGTNPGSS 317

Query:   335 LSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDPVHGGE 394
             LSFMRGVLPKYFSSEWS+AQFH+ EVT F AAFGS NTV I+ MDGSFYRCSFDPV+GGE
Sbjct:   318 LSFMRGVLPKYFSSEWSYAQFHVSEVTQFFAAFGSNNTVAIIGMDGSFYRCSFDPVNGGE 377

Query:   395 MLQQEYVRFLKTVSRP 410
             M Q EY+ F+K  +RP
Sbjct:   378 MGQLEYIHFMKMDNRP 393

GO:0003674 "molecular_function" evidence=ND

GO:0006914 "autophagy" evidence=IBA

GO:0008150 "biological_process" evidence=ND

GO:0031090 "organelle membrane" evidence=IBA

GO:0042594 "response to starvation" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

TAIR|locus:2102614 ATG18D "homolog of yeast autophagy 18 (ATG18) D" [Arabidopsis thaliana (taxid:3702)]

 Score = 1446 (514.1 bits), Expect = 4.3e-148, P = 4.3e-148
 Identities = 270/373 (72%), Positives = 311/373 (83%)

Query:    39 FSDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCN 98
             F + DE EL+SVSWNQDY CFAAGTS GFRIYNCEPFKETFRR+LK GGF+IVEMLFR N
Sbjct:    28 FGESDEAELVSVSWNQDYSCFAAGTSHGFRIYNCEPFKETFRRELKDGGFKIVEMLFRSN 87

Query:    99 ILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYS 158
             ILALVG G NSQYP  KV+IWDDHQ RCI EF FRS++R+VKL RDRIVVVLEHKIYVY+
Sbjct:    88 ILALVGGGPNSQYPSNKVLIWDDHQGRCISEFTFRSEIRAVKLRRDRIVVVLEHKIYVYN 147

Query:   159 FVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSH 218
             F+DL+LLHQIE +AN RGLCCLSHH +TSVLACPG++RG+VR+EHFGLNM+++INAHDS+
Sbjct:   148 FMDLRLLHQIENMANPRGLCCLSHHMNTSVLACPGIRRGEVRVEHFGLNMVQIINAHDSN 207

Query:   219 IACFXXXXXXXXXXXXXXRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAV 278
             IAC               +GTLIRIFNT+DGTRLQEVRRGVDRA+IYSIALSPNVQWLAV
Sbjct:   208 IACMTLTLDGLLLATASTKGTLIRIFNTMDGTRLQEVRRGVDRADIYSIALSPNVQWLAV 267

Query:   279 ASDKGTVHIFSLRVRVVGEDXXXXXXXXXXXTELLNHSSSFDTLISPSTGANPGSSLSFM 338
             +SDKGTVHIFSLRVRV+GED           TE    S+S   L+SP++GANPGSSLSF+
Sbjct:   268 SSDKGTVHIFSLRVRVIGEDAYS--------TEHETSSNSLQPLVSPASGANPGSSLSFL 319

Query:   339 RGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDPVHGGEMLQQ 398
             RGVLPKYFSSEWSF+QFH+PEVT + AAFG+QNT+ I+ +DGSFYRC+FDPV+GGEM Q 
Sbjct:   320 RGVLPKYFSSEWSFSQFHVPEVTQYFAAFGAQNTIAIIGLDGSFYRCNFDPVNGGEMTQL 379

Query:   399 EYVRFLKTVSRPR 411
             E+  FLK  S PR
Sbjct:   380 EHFHFLKQDS-PR 391

GO:0005634 "nucleus" evidence=ISM

GO:0006914 "autophagy" evidence=IBA

GO:0008150 "biological_process" evidence=ND

GO:0031090 "organelle membrane" evidence=IBA

GO:0042594 "response to starvation" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

UNIPROTKB|Q5VQF8 OJ1276_B06.19 "Putative uncharacterized protein OJ1276_B06.19" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1418 (504.2 bits), Expect = 4.0e-145, P = 4.0e-145
 Identities = 269/414 (64%), Positives = 317/414 (76%)

Query:     1 MTSTVSTSREILXXXXXXXXXXXXXXXXXXXXXHPQTAFSDVDEIELISVSWNQDYGCFA 60
             M+S VSTSR +                        +   SD  +I L+SVSWNQD+GCFA
Sbjct:     1 MSSQVSTSRGLPSPSKLGTFESPHTWQMSGPTGQAEAGSSDDQDIRLLSVSWNQDFGCFA 60

Query:    61 AGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD 120
             AGTS GFRI+NC+PFKETFRRDLKSGGF IVEMLFRCNILALVG G N+ YPP KV+IWD
Sbjct:    61 AGTSNGFRIFNCDPFKETFRRDLKSGGFGIVEMLFRCNILALVGGGSNAHYPPNKVMIWD 120

Query:   121 DHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGLCCL 180
             DH+S CIGEFAFRSDVR+VKL +D IV+VLE KIYVY+F DLKLLHQIET +N +GLCCL
Sbjct:   121 DHRSHCIGEFAFRSDVRAVKLGKDYIVIVLERKIYVYNFTDLKLLHQIETQSNPKGLCCL 180

Query:   181 SHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFXXXXXXXXXXXXXXRGTL 240
             SHHS+TSVLACPG+ +G VR+EHFGL + ++I+AHDSHI+C               +GTL
Sbjct:   181 SHHSNTSVLACPGVHQGHVRVEHFGLKVTRMISAHDSHISCMALTMDGLLLATASMKGTL 240

Query:   241 IRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDXX 300
             IRIFNT+DGTRLQEVRRG+D+A+IYSIALSPNVQWLAV+SDKGTVHIFSLRVRV GED  
Sbjct:   241 IRIFNTMDGTRLQEVRRGLDKADIYSIALSPNVQWLAVSSDKGTVHIFSLRVRVAGEDAS 300

Query:   301 XXXXXXXX-XTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPE 359
                        +  N SSS D LI  +TG+N  SSLSFM+G+LPKYFSSEWSFAQFH+PE
Sbjct:   301 NEQRSLEGPRMDHQNSSSSIDPLIQTNTGSNASSSLSFMKGILPKYFSSEWSFAQFHLPE 360

Query:   360 VTHFIAAFGSQNTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVRFLKTVSRPRRS 413
             VT +I AFG+QNTV++V +DGSFYRCSFD V+GG+MLQ+EY RF+K    P R+
Sbjct:   361 VTRYIVAFGAQNTVMMVGLDGSFYRCSFDQVNGGQMLQKEYFRFIKADLTPLRT 414

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

TAIR|locus:2081705 AtATG18a "autophagy 18a" [Arabidopsis thaliana (taxid:3702)]

 Score = 859 (307.4 bits), Expect = 4.3e-113, Sum P(2) = 4.3e-113
 Identities = 159/247 (64%), Positives = 189/247 (76%)

Query:    47 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDL-KSGGFRIVEMLFRCNILALVGA 105
             ++ +S+NQD+ CFA GT  GFRI NC+PF+E FRRD  + GG  +VEMLFRCNILALVG 
Sbjct:    78 VLHLSFNQDHACFAVGTDRGFRILNCDPFREIFRRDFDRGGGVAVVEMLFRCNILALVGG 137

Query:   106 GDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLL 165
             G + QYPP KV+IWDDHQ RCIGE +FRSDVRSV+L RDRI+VVLE KI+VY+F DLKL+
Sbjct:   138 GPDPQYPPNKVMIWDDHQGRCIGELSFRSDVRSVRLRRDRIIVVLEQKIFVYNFSDLKLM 197

Query:   166 HQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFXXX 225
             HQIET+AN +GLC +S    + VL CPGLQ+GQVRIEH+     K + AHDS IACF   
Sbjct:   198 HQIETIANPKGLCAVSQGVGSMVLVCPGLQKGQVRIEHYASKRTKFVMAHDSRIACFALT 257

Query:   226 XXXXXXXXXXXRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTV 285
                        +GTL+RIFNTVDGT  QEVRRG DRAEIYS+A S N QWLAV+SDKGTV
Sbjct:   258 QDGHLLATASSKGTLVRIFNTVDGTLRQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTV 317

Query:   286 HIFSLRV 292
             H+F L+V
Sbjct:   318 HVFGLKV 324

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0031090 "organelle membrane" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

GO:0006914 "autophagy" evidence=RCA;IMP

GO:0010150 "leaf senescence" evidence=IMP

GO:0042594 "response to starvation" evidence=IEP;IMP

GO:0006979 "response to oxidative stress" evidence=IEP

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP;IMP

GO:0009651 "response to salt stress" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

GO:0048102 "autophagic cell death" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IEP

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0044265 "cellular macromolecule catabolic process" evidence=RCA

UNIPROTKB|Q8LR61 P0423A12.30 "Putative WD repeat domain 45" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 843 (301.8 bits), Expect = 5.6e-109, Sum P(2) = 5.6e-109
 Identities = 156/259 (60%), Positives = 192/259 (74%)

Query:    46 ELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKS----------GGFRIVEMLF 95
             +L+ +S+NQDYGCFAAGT  GFRIYNC+PF+E FRRDL +          GG  +VEMLF
Sbjct:    98 DLLHISFNQDYGCFAAGTKSGFRIYNCDPFREIFRRDLGAAGDNGVGGGGGGIGVVEMLF 157

Query:    96 RCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIY 155
             RCNILALVG GD   YPP KV+IWDDHQSRCIGE +FRS VR V+L RDRI+VVLE+KI+
Sbjct:   158 RCNILALVGGGDAPHYPPNKVMIWDDHQSRCIGELSFRSPVRGVRLRRDRIIVVLENKIF 217

Query:   156 VYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAH 215
             VY+F DLKL+HQIET  N +GLC +S    + VL CPG Q+GQVR+EH+G    K INAH
Sbjct:   218 VYNFADLKLVHQIETAPNPKGLCAVSQQPGSIVLVCPGAQKGQVRVEHYGARKTKFINAH 277

Query:   216 DSHIACFXXXXXXXXXXXXXXRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQW 275
              S +ACF              +GTL+RI+N  +G  LQEVRRG DRAEIYS+A S N+Q+
Sbjct:   278 TSRVACFALSQDGRLIATASTKGTLVRIYNAAEGNLLQEVRRGADRAEIYSLAFSNNLQY 337

Query:   276 LAVASDKGTVHIFSLRVRV 294
             LAV+SDKGT+H+F+L++ V
Sbjct:   338 LAVSSDKGTIHVFNLKINV 356

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

UNIPROTKB|Q0DKE9 Os05g0169200 "Os05g0169200 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1065 (380.0 bits), Expect = 1.0e-107, P = 1.0e-107
 Identities = 205/369 (55%), Positives = 260/369 (70%)

Query:    40 SDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDL-KSGGFRIVEMLFRCN 98
             SD D +EL+SVSWNQD  CF A T+ GFR+++C+PF ET RR    +GG  I EMLFR +
Sbjct:    10 SDDDGVELLSVSWNQDNSCFIAATTNGFRVFSCKPFHETMRRMFGPNGGIGIAEMLFRTS 69

Query:    99 ILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYS 158
             I  L GA  N+++PPT + +WDD+  R I ++ F S++R+V+LS+D  VVVLE  I VY 
Sbjct:    70 IFGLAGAESNTEFPPTMLQLWDDYNERRIHKYNFTSEIRAVRLSKDYFVVVLEKTINVYR 129

Query:   159 FVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSH 218
             F DL+L +Q  T++N  GLCCLSHH++ SV ACPG  +GQV IEHFGL   + I AHDS 
Sbjct:   130 FKDLRLFYQARTVSNPNGLCCLSHHANASVFACPGTSKGQVLIEHFGLKETRFIAAHDSP 189

Query:   219 IACFXXXXXXXXXXXXXXRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAV 278
             ++C               RGTLIRIFNT DGT +QEVRRG+DRAEIYSIALSPNVQWLAV
Sbjct:   190 LSCMTMALDGTLLATASVRGTLIRIFNTRDGTCVQEVRRGLDRAEIYSIALSPNVQWLAV 249

Query:   279 ASDKGTVHIFSLRVRVVGEDXXXXXXXXXXX--TELLNHSSSFDTLISPSTGANPGSSLS 336
             +SDKGTVH+FSLRV+   ED              +  N+ S+   +     G+N  SSLS
Sbjct:   250 SSDKGTVHVFSLRVKDAEEDAKKGESATAGAQVNDNCNYGSTVP-VTQTKIGSNTSSSLS 308

Query:   337 FMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDPVHGGEML 396
             FM+G+LPKYFSSEWSFAQF +PE+T +I AFG Q+TV+++ +DGSFYR SFDPV+GGEM+
Sbjct:   309 FMKGILPKYFSSEWSFAQFRLPEITRYIMAFGDQDTVMMIGLDGSFYRYSFDPVNGGEMM 368

Query:   397 QQEYVRFLK 405
              +EY  FLK
Sbjct:   369 LKEYHLFLK 377

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

TAIR|locus:2156779 G18E "AT5G05150" [Arabidopsis thaliana (taxid:3702)]

 Score = 674 (242.3 bits), Expect = 3.5e-86, Sum P(2) = 3.5e-86
 Identities = 125/257 (48%), Positives = 178/257 (69%)

Query:    44 EIELISVSWNQDYGCFAAGTSCGFRIYNCEPF-KETFRRDLKSGGFRIVEMLFRCNILAL 102
             +++++SV+WNQ    F  GT+ GF +Y+C+P  K++  R     GF++ EMLF  N+ A 
Sbjct:    30 DLKVLSVAWNQVCSGFIVGTNHGFNVYSCKPMIKKSISRAPHESGFKVAEMLFLSNLFAF 89

Query:   103 VGAG-DNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVD 161
             VG G +NS+YPP KV +WDD+++ C+ E  F+S+V +VKL+R+ +VVVL+  IYVY+F +
Sbjct:    90 VGNGYNNSEYPPNKVFVWDDYRNCCLSELTFKSEVIAVKLAREHVVVVLKQNIYVYTFNN 149

Query:   162 LKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIAC 221
             LK+   IETL N +GLCC++H  S +VLACPG   GQV++     N+IK I AHDS IAC
Sbjct:   150 LKVDRVIETLMNPKGLCCVTHVESKAVLACPGFHPGQVQVHDLRWNVIKFIKAHDSAIAC 209

Query:   222 FXXXXXXXXXXXXXXRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASD 281
                            +GTLIRIFN VDGT LQE RRGV+RAEIY++A+S N++W+A +S+
Sbjct:   210 MTLTLDGSLLATASTKGTLIRIFNAVDGTLLQEFRRGVERAEIYNVAISSNLKWVAASSE 269

Query:   282 KGTVHIFSLRVRVVGED 298
             KGT+H+F LR  ++  D
Sbjct:   270 KGTLHVFRLRPDILSFD 286

GO:0006914 "autophagy" evidence=IBA

GO:0031090 "organelle membrane" evidence=IBA

GO:0042594 "response to starvation" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

GO:0006863 "purine nucleobase transport" evidence=RCA

DICTYBASE|DDB_G0282581 wdr45l "WD repeat domain phosphoinositide-interacting protein 3" [Dictyostelium discoideum (taxid:44689)]

 Score = 633 (227.9 bits), Expect = 5.3e-73, Sum P(2) = 5.3e-73
 Identities = 121/244 (49%), Positives = 170/244 (69%)

Query:    47 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAG 106
             L+  ++NQDY CFA GT  GF I++C+PFKE F R +  GG  IVEMLFRCNILA+VG G
Sbjct:    13 LLFANFNQDYSCFACGTEKGFLIFSCDPFKERFGR-VFDGGVGIVEMLFRCNILAIVGGG 71

Query:   107 DNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLH 166
                +Y P +V+IWDD+Q++CI +  F+S+V++VKL RDRIVVVLE+K+Y+Y+F DL+L+H
Sbjct:    72 KKPRYTPNQVMIWDDYQNKCIAKLEFKSEVKAVKLRRDRIVVVLENKVYLYNFSDLQLVH 131

Query:   167 QIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFXXXX 226
             Q+ET  N +G+C +    + +VLACPGL+ G V +E + L   ++I AH+  ++      
Sbjct:   132 QLETTNNPKGICAICP-GTVNVLACPGLKPGYVHVELYDLKQTQIIPAHEGALSQIALNK 190

Query:   227 XXXXXXXXXXRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVH 286
                       +GTLIRIF+T  G +++E+RRG +RAEIYSIA + +   L V+SDK T H
Sbjct:   191 DGTLLATASEKGTLIRIFDTATGEKVKELRRGTNRAEIYSIAFNNDSTALCVSSDKNTGH 250

Query:   287 IFSL 290
             IF L
Sbjct:   251 IFDL 254

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|Q640T2 wdr45b "WD repeat domain phosphoinositide-interacting protein 3" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 515 (186.3 bits), Expect = 4.8e-64, Sum P(2) = 4.8e-64
 Identities = 107/246 (43%), Positives = 147/246 (59%)

Query:    47 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAG 106
             L+   +NQD+GCFA G   GFR+YN +P KE  +++   GG   VEMLFRCN LALVG G
Sbjct:    13 LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVGYVEMLFRCNYLALVGGG 72

Query:   107 DNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFV-DLKLL 165
                +YPP KV+IWDD + + + E  F ++V++VKL RDRIVVVL+  I V++F  +   L
Sbjct:    73 KKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQL 132

Query:   166 HQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLIN--AHDSHIACFX 223
             H  ET  N +GLC L  +S+ S+LA PG   G V+I          ++  AH+  ++C  
Sbjct:   133 HVFETCYNPKGLCVLCPNSNNSLLAFPGAHTGHVQIVDLASTEKPPVDIPAHEGILSCIA 192

Query:   224 XXXXXXXXXXXXXRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKG 283
                          +GTLIRIF+T  G  +QE+RRG   A IY I  + +   + V+SD G
Sbjct:   193 LNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNEDASLICVSSDHG 252

Query:   284 TVHIFS 289
             TVHIF+
Sbjct:   253 TVHIFA 258

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

UNIPROTKB|Q5MNZ6 WDR45B "WD repeat domain phosphoinositide-interacting protein 3" [Homo sapiens (taxid:9606)]

 Score = 511 (184.9 bits), Expect = 9.9e-64, Sum P(2) = 9.9e-64
 Identities = 106/246 (43%), Positives = 147/246 (59%)

Query:    47 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAG 106
             L+   +NQD+GCFA G   GFR+YN +P KE  +++   GG   VEMLFRCN LALVG G
Sbjct:    13 LLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVGHVEMLFRCNYLALVGGG 72

Query:   107 DNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFV-DLKLL 165
                +YPP KV+IWDD + + + E  F ++V++VKL RDRIVVVL+  I V++F  +   L
Sbjct:    73 KKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMIKVFTFTHNPHQL 132

Query:   166 HQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLIN--AHDSHIACFX 223
             H  ET  N +GLC L  +S+ S+LA PG   G V++          ++  AH+  ++C  
Sbjct:   133 HVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQLVDLASTEKPPVDIPAHEGVLSCIA 192

Query:   224 XXXXXXXXXXXXXRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKG 283
                          +GTLIRIF+T  G  +QE+RRG   A IY I  + +   + V+SD G
Sbjct:   193 LNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNQDASLICVSSDHG 252

Query:   284 TVHIFS 289
             TVHIF+
Sbjct:   253 TVHIFA 258

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P0CS28	ATG18_CRYNJ	No assigned EC number	0.3308	0.8481	0.8321	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.125.193.1 hypothetical protein (368 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	415
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-09
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-05
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-04

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 56.6 bits (137), Expect = 6e-09
 Identities = 38/193 (19%), Positives = 74/193 (38%), Gaps = 16/193 (8%)

Query: 102 LVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSD-VRSVKLSRDRIVVV---LEHKIYVY 157
           L  +  +       + +WD    +C+      +D V SV  S D   V     +  I ++
Sbjct: 108 LSSSSRDK-----TIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW 162

Query: 158 SFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI-EHFGLNMIKLINAHD 216
                K +  +                   +L+      G +++ +      +  +  H+
Sbjct: 163 DLRTGKCVATLTGH-TGEVNSVAFSPDGEKLLSSSS--DGTIKLWDLSTGKCLGTLRGHE 219

Query: 217 SHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWL 276
           + +     + DG LLA+ S  GT IR+++   G  +Q +        + S+A SP+ + L
Sbjct: 220 NGVNSVAFSPDGYLLASGSEDGT-IRVWDLRTGECVQTLSGH--TNSVTSLAWSPDGKRL 276

Query: 277 AVASDKGTVHIFS 289
           A  S  GT+ I+ 
Sbjct: 277 ASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 38/183 (20%), Positives = 74/183 (40%), Gaps = 15/183 (8%)

Query: 116 VIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETL 171
           + +WD     C+       S V SV  S D  ++     +  I V+     K L  +   
Sbjct: 75  IRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR-- 132

Query: 172 ANLRGLCCLSHHSSTSVLACPGLQRGQVRI---EHFGLNMIKLINAHDSHIACFTLTLDG 228
            +   +  ++     + +A    Q G +++          +  +  H   +     + DG
Sbjct: 133 GHTDWVNSVAFSPDGTFVAS-SSQDGTIKLWDLRTGKC--VATLTGHTGEVNSVAFSPDG 189

Query: 229 LLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIF 288
             L ++S+ GT I++++   G  L  +R       + S+A SP+   LA  S+ GT+ ++
Sbjct: 190 EKLLSSSSDGT-IKLWDLSTGKCLGTLRG--HENGVNSVAFSPDGYLLASGSEDGTIRVW 246

Query: 289 SLR 291
            LR
Sbjct: 247 DLR 249

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 52.0 bits (123), Expect = 3e-07
 Identities = 62/354 (17%), Positives = 118/354 (33%), Gaps = 37/354 (10%)

Query: 43  DEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC----N 98
           D I  I+ S + +    +  +    ++++ +  ++  +         + ++        +
Sbjct: 66  DSITSIAFSPDGEL-LLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNS 124

Query: 99  ILALVGAGDNSQYPPTKVIIWD-DHQSRCIGEF-AFRSDVRSVKLSRDRIVVVLE----H 152
           IL    + D +      V +WD     + I         V S+  S D  ++        
Sbjct: 125 ILLASSSLDGT------VKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDG 178

Query: 153 KIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI---EHFGLNMI 209
            I ++     K L  +    +   +  L+      +L   G   G +R+       L   
Sbjct: 179 TIKLWDLRTGKPLSTLAG--HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS 236

Query: 210 KLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIAL 269
            L    DS ++ F+   DG LLA+ S+ GT IR+++    + L     G   + + S+A 
Sbjct: 237 TLSGHSDSVVSSFSP--DGSLLASGSSDGT-IRLWDLRSSSSLLRTLSG-HSSSVLSVAF 292

Query: 270 SPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGA 329
           SP+ + LA  S  GTV ++ L                  S  L  H     +L     G+
Sbjct: 293 SPDGKLLASGSSDGTVRLWDLE-----------TGKLLSSLTLKGHEGPVSSLSFSPDGS 341

Query: 330 NPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFY 383
              S  S    +      +               ++       V   S DG+  
Sbjct: 342 LLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVR 395

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 52/269 (19%), Positives = 99/269 (36%), Gaps = 16/269 (5%)

Query: 49  SVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDN 108
           S++++ D G   A  S    I   +       R   SG    V   F  +   L     +
Sbjct: 203 SLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSD 262

Query: 109 SQYPPTKVIIWD-DHQSRCIGEFAFRSD-VRSVKLSRDRIVVV---LEHKIYVYSFVDLK 163
                  + +WD    S  +   +  S  V SV  S D  ++     +  + ++     K
Sbjct: 263 G-----TIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGK 317

Query: 164 LLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFT 223
           LL  +    +   +  LS     S+L   G   G +R+               S++   +
Sbjct: 318 LLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVS 377

Query: 224 LTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKG 283
            + DG ++++ ST GT +R+++   G+ L+ +     R  + S+  SP+ + LA  S   
Sbjct: 378 FSPDGRVVSSGSTDGT-VRLWDLSTGSLLRNLDGHTSR--VTSLDFSPDGKSLASGSSDN 434

Query: 284 TV---HIFSLRVRVVGEDSSSSLSTPSQS 309
           T+    + +    V        L++ S  
Sbjct: 435 TIRLWDLKTSLKSVSFSPDGKVLASKSSD 463

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 30/196 (15%), Positives = 71/196 (36%), Gaps = 19/196 (9%)

Query: 102 LVGAGDNSQYPPTKVIIWD----DHQSRCIGEFAFRSDVRSVKLSRDRIVVV-LEHKIYV 156
             G+GD        + +WD    +      G      DV +       +     +  I +
Sbjct: 25  ATGSGDG------TIKVWDLETGELLRTLKGHTGPVRDVAASA-DGTYLASGSSDKTIRL 77

Query: 157 YSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNM-IKLINAH 215
           +     + +  +    +   +  ++      +L+        +++        +  +  H
Sbjct: 78  WDLETGECVRTLTGHTS--YVSSVAFSPDGRILSSSSRD-KTIKVWDVETGKCLTTLRGH 134

Query: 216 DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQW 275
              +     + DG  +A++S  GT I++++   G +      G    E+ S+A SP+ + 
Sbjct: 135 TDWVNSVAFSPDGTFVASSSQDGT-IKLWDLRTG-KCVATLTGHTG-EVNSVAFSPDGEK 191

Query: 276 LAVASDKGTVHIFSLR 291
           L  +S  GT+ ++ L 
Sbjct: 192 LLSSSSDGTIKLWDLS 207

Length = 289

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	415
KOG2111	346	consensus Uncharacterized conserved protein, conta	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG2110	391	consensus Uncharacterized conserved protein, conta	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0286	343	consensus G-protein beta subunit [General function	99.98
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.98
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.98
KOG0266	456	consensus WD40 repeat-containing protein [General	99.98
KOG0645	312	consensus WD40 repeat protein [General function pr	99.98
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.97
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.97
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.97
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.97
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.97
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.97
KOG0296	399	consensus Angio-associated migratory cell protein	99.97
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.97
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.97
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.96
KOG0643	327	consensus Translation initiation factor 3, subunit	99.96
KOG0296	399	consensus Angio-associated migratory cell protein	99.96
KOG0266	456	consensus WD40 repeat-containing protein [General	99.96
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.96
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.96
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.96
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.95
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.95
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.95
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.95
KOG0645	312	consensus WD40 repeat protein [General function pr	99.95
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.95
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.95
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.95
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.95
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.95
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.95
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.95
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.95
PLN00181	793	protein SPA1-RELATED; Provisional	99.94
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.94
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.94
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.94
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.94
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.94
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.94
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.94
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.94
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.93
KOG0289	506	consensus mRNA splicing factor [General function p	99.93
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.93
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.93
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.93
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.93
PTZ00421	493	coronin; Provisional	99.93
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.93
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.93
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.93
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.93
KOG0641	350	consensus WD40 repeat protein [General function pr	99.93
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.93
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.93
PTZ00421	493	coronin; Provisional	99.92
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.92
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.92
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.92
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.92
PTZ00420	568	coronin; Provisional	99.92
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.92
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.92
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.91
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.91
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.91
KOG2096	420	consensus WD40 repeat protein [General function pr	99.91
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.91
KOG2055	514	consensus WD40 repeat protein [General function pr	99.91
PTZ00420	568	coronin; Provisional	99.91
KOG1274	933	consensus WD40 repeat protein [General function pr	99.91
KOG0639	705	consensus Transducin-like enhancer of split protei	99.91
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.91
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.9
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.9
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.9
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.9
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.9
KOG0643	327	consensus Translation initiation factor 3, subunit	99.9
KOG0641	350	consensus WD40 repeat protein [General function pr	99.9
KOG0639	705	consensus Transducin-like enhancer of split protei	99.89
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.89
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.89
KOG0289	506	consensus mRNA splicing factor [General function p	99.89
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.89
KOG1273	405	consensus WD40 repeat protein [General function pr	99.89
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.88
KOG2048	691	consensus WD40 repeat protein [General function pr	99.88
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.88
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.87
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.87
KOG2055	514	consensus WD40 repeat protein [General function pr	99.87
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.87
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.87
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.87
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.87
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.87
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.87
KOG0646	476	consensus WD40 repeat protein [General function pr	99.86
KOG2096	420	consensus WD40 repeat protein [General function pr	99.86
KOG0646	476	consensus WD40 repeat protein [General function pr	99.86
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.86
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.86
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.85
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.85
KOG2048	691	consensus WD40 repeat protein [General function pr	99.85
KOG1539	910	consensus WD repeat protein [General function pred	99.85
KOG0267	825	consensus Microtubule severing protein katanin p80	99.85
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.85
KOG0267	825	consensus Microtubule severing protein katanin p80	99.84
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.84
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.84
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.84
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.84
KOG4328	498	consensus WD40 protein [Function unknown]	99.83
KOG1274	933	consensus WD40 repeat protein [General function pr	99.82
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.82
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.82
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.82
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.81
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.8
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.8
KOG1539	910	consensus WD repeat protein [General function pred	99.79
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.79
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.79
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.78
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.78
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.77
KOG4227	609	consensus WD40 repeat protein [General function pr	99.77
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.77
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.77
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.77
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.76
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.76
KOG1273	405	consensus WD40 repeat protein [General function pr	99.76
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.76
PRK11028	330	6-phosphogluconolactonase; Provisional	99.74
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.74
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.74
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.73
COG2319	466	FOG: WD40 repeat [General function prediction only	99.73
PRK11028	330	6-phosphogluconolactonase; Provisional	99.73
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.71
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.7
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.7
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.69
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.69
KOG1963	792	consensus WD40 repeat protein [General function pr	99.68
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.67
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.66
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.66
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.66
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.66
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.66
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.66
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.66
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.65
KOG4328	498	consensus WD40 protein [Function unknown]	99.65
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.64
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.64
KOG1188	376	consensus WD40 repeat protein [General function pr	99.64
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.64
KOG1963	792	consensus WD40 repeat protein [General function pr	99.64
COG2319	466	FOG: WD40 repeat [General function prediction only	99.63
KOG0649	325	consensus WD40 repeat protein [General function pr	99.63
KOG2321	703	consensus WD40 repeat protein [General function pr	99.62
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.62
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.62
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.61
KOG1188	376	consensus WD40 repeat protein [General function pr	99.6
PRK01742	429	tolB translocation protein TolB; Provisional	99.59
PRK01742	429	tolB translocation protein TolB; Provisional	99.58
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.58
KOG0649	325	consensus WD40 repeat protein [General function pr	99.58
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.57
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.56
KOG1334	559	consensus WD40 repeat protein [General function pr	99.55
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.55
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.55
PRK03629	429	tolB translocation protein TolB; Provisional	99.53
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.53
PRK04922	433	tolB translocation protein TolB; Provisional	99.52
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.51
PRK04922	433	tolB translocation protein TolB; Provisional	99.51
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.51
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.5
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.5
PRK03629	429	tolB translocation protein TolB; Provisional	99.49
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.49
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.49
KOG2315	566	consensus Predicted translation initiation factor	99.49
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.48
PRK05137	435	tolB translocation protein TolB; Provisional	99.48
PRK02889	427	tolB translocation protein TolB; Provisional	99.48
KOG4227	609	consensus WD40 repeat protein [General function pr	99.46
PRK05137	435	tolB translocation protein TolB; Provisional	99.46
KOG1310	758	consensus WD40 repeat protein [General function pr	99.46
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.45
PRK02889	427	tolB translocation protein TolB; Provisional	99.45
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.42
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.42
KOG1310	758	consensus WD40 repeat protein [General function pr	99.41
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.4
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.4
KOG2139	445	consensus WD40 repeat protein [General function pr	99.4
KOG2139	445	consensus WD40 repeat protein [General function pr	99.39
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.39
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.38
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.36
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.36
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.32
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.32
PRK01029	428	tolB translocation protein TolB; Provisional	99.3
KOG2315	566	consensus Predicted translation initiation factor	99.3
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.29
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.29
PRK04792	448	tolB translocation protein TolB; Provisional	99.28
PRK04792	448	tolB translocation protein TolB; Provisional	99.28
PRK00178	430	tolB translocation protein TolB; Provisional	99.27
KOG2314	698	consensus Translation initiation factor 3, subunit	99.26
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.25
PRK00178	430	tolB translocation protein TolB; Provisional	99.25
KOG4547	541	consensus WD40 repeat-containing protein [General	99.22
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.21
PRK01029	428	tolB translocation protein TolB; Provisional	99.2
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.2
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.19
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.19
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.18
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.17
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.17
KOG1334	559	consensus WD40 repeat protein [General function pr	99.16
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.13
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.12
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.12
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.12
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.12
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.1
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.09
KOG2321	703	consensus WD40 repeat protein [General function pr	99.09
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.08
COG4946	668	Uncharacterized protein related to the periplasmic	99.08
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.07
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.06
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.03
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.01
PRK04043	419	tolB translocation protein TolB; Provisional	99.01
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.95
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.94
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.92
KOG2314	698	consensus Translation initiation factor 3, subunit	98.92
PRK04043	419	tolB translocation protein TolB; Provisional	98.92
KOG4547	541	consensus WD40 repeat-containing protein [General	98.91
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.91
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.91
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.87
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.87
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.87
COG4946	668	Uncharacterized protein related to the periplasmic	98.85
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.84
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.83
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.83
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.76
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.76
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.74
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.72
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.66
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.64
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.64
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.64
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.63
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.63
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.6
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.57
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.56
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.56
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.53
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.52
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.51
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.51
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.5
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.49
KOG2695	425	consensus WD40 repeat protein [General function pr	98.38
KOG2695	425	consensus WD40 repeat protein [General function pr	98.35
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.31
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.31
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.3
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.3
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.29
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.24
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.22
PRK02888	635	nitrous-oxide reductase; Validated	98.21
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.19
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.18
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.17
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.17
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.16
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.15
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.1
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.1
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.09
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.08
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.05
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.04
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.02
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.01
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.98
COG3391	381	Uncharacterized conserved protein [Function unknow	97.97
KOG3621	726	consensus WD40 repeat-containing protein [General	97.94
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.89
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.86
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.86
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.85
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.84
PRK02888	635	nitrous-oxide reductase; Validated	97.83
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.82
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.8
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.76
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.76
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.74
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.69
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.64
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.64
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.59
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.58
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.53
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.53
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.53
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.51
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.45
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.43
KOG3621	726	consensus WD40 repeat-containing protein [General	97.42
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.38
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.38
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.37
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.35
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.34
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.33
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.32
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.32
KOG2395	644	consensus Protein involved in vacuole import and d	97.31
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.29
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.25
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.22
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.18
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.12
PRK13616	591	lipoprotein LpqB; Provisional	97.09
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.06
KOG2395	644	consensus Protein involved in vacuole import and d	97.03
COG3391	381	Uncharacterized conserved protein [Function unknow	97.01
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.98
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.96
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.72
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.71
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.69
PRK13616	591	lipoprotein LpqB; Provisional	96.67
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.6
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.43
KOG1008	783	consensus Uncharacterized conserved protein, conta	96.38
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.31
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.19
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	96.14
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	96.06
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.06
KOG2444	238	consensus WD40 repeat protein [General function pr	95.96
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	95.77
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	95.69
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.59
PRK10115	686	protease 2; Provisional	95.58
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.56
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	95.52
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.29
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	95.15
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.13
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.85
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.64
PF14727	418	PHTB1_N: PTHB1 N-terminus	94.61
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	94.24
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	94.2
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	94.08
PRK13684	334	Ycf48-like protein; Provisional	93.97
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.86
KOG2444	238	consensus WD40 repeat protein [General function pr	93.84
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	93.82
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	93.8
PRK10115	686	protease 2; Provisional	93.71
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.68
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	93.61
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	93.6
COG5167	776	VID27 Protein involved in vacuole import and degra	93.39
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	93.17
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	93.17
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	92.99
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	92.95
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	92.62
COG4880	603	Secreted protein containing C-terminal beta-propel	92.61
PHA02713	557	hypothetical protein; Provisional	92.13
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	92.05
COG5167	776	VID27 Protein involved in vacuole import and degra	91.39
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	91.12
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	90.7
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	90.49
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	90.25
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	90.16
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	89.97
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	89.8
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	89.67
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	88.32
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	88.11
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	88.08
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	87.97
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	87.83
PLN00033	398	photosystem II stability/assembly factor; Provisio	87.57
KOG2247	615	consensus WD40 repeat-containing protein [General	87.42
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	87.41
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	87.28
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	87.09
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	86.37
KOG3616	1636	consensus Selective LIM binding factor [Transcript	86.19
PRK13684	334	Ycf48-like protein; Provisional	86.13
PHA02713	557	hypothetical protein; Provisional	85.88
COG5276	370	Uncharacterized conserved protein [Function unknow	84.79
KOG2377	657	consensus Uncharacterized conserved protein [Funct	84.77
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	84.76
COG3292	671	Predicted periplasmic ligand-binding sensor domain	84.09
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	83.66
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	83.56
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	83.15
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	82.83
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	82.82
PHA03098	534	kelch-like protein; Provisional	82.44
COG3292	671	Predicted periplasmic ligand-binding sensor domain	82.33
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	81.96
KOG0783	1267	consensus Uncharacterized conserved protein, conta	81.61
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	81.53
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	81.26
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	81.12

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=100.00  E-value=1.7e-43  Score=297.79  Aligned_cols=331  Identities=61%  Similarity=1.000  Sum_probs=299.3

Q ss_pred             ceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCC
Q 014977           46 ELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR  125 (415)
Q Consensus        46 ~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~  125 (415)
                      ...+++|+.|...+++|.+..++||++++.++.....+...+..++.|.|..+...|++|+..|.|..+.|.|||-...+
T Consensus         7 ~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~   86 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKER   86 (346)
T ss_pred             ceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCc
Confidence            45569999999999999999999999999887666666667788999999999999999999999999999999988899


Q ss_pred             EEEEEEccCceeEEEEcCCeEEEEeCCeEEEEEcC-CceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEc
Q 014977          126 CIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFV-DLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHF  204 (415)
Q Consensus       126 ~~~~~~~~~~i~~l~~~~~~~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~  204 (415)
                      ++.++.+..+|.++.+.++...++..+.|+||... +.+.++.+....+|.+.+++.+..+..+||+.|..-|.|+|-++
T Consensus        87 ~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL  166 (346)
T KOG2111|consen   87 CIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDL  166 (346)
T ss_pred             EEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEh
Confidence            99999999999999999999999999999999997 67889999888888899999999999999999999999999555


Q ss_pred             CCcc---eEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeC
Q 014977          205 GLNM---IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASD  281 (415)
Q Consensus       205 ~~~~---~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~  281 (415)
                      ....   ...+.+|.+.|.+++++-+|.+||++|..|+.|||||..+|+++.+++.+...+.|.+|+|||++.+||++|+
T Consensus       167 ~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSd  246 (346)
T KOG2111|consen  167 ASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSD  246 (346)
T ss_pred             hhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcC
Confidence            4433   4788999999999999999999999999999999999999999999999888899999999999999999999


Q ss_pred             CCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCc
Q 014977          282 KGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVT  361 (415)
Q Consensus       282 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (415)
                      .|+|+||.++.....++                                ..+++.+...++|+|++++|++++|+++.+.
T Consensus       247 KgTlHiF~l~~~~~~~~--------------------------------~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~  294 (346)
T KOG2111|consen  247 KGTLHIFSLRDTENTED--------------------------------ESSSLSFKRLVLPKYFSSEWSFAKFQLPQGT  294 (346)
T ss_pred             CCeEEEEEeecCCCCcc--------------------------------ccccccccccccchhcccceeEEEEEccCCC
Confidence            99999999998664421                                1144444555899999999999999999999


Q ss_pred             eEEEEecCC-CEEEEEEeCCcEEEEEEecCCCCcEEEeeeeecccCCC
Q 014977          362 HFIAAFGSQ-NTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVRFLKTVS  408 (415)
Q Consensus       362 ~~~~~~~~~-~~i~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (415)
                      +++++|..+ +.|++.|.||.+|.+.+++.++|+|.+..+..|+.-.+
T Consensus       295 ~~~~~fg~~~nsvi~i~~Dgsy~k~~f~~~~~g~~~~~~~~~~~~~~~  342 (346)
T KOG2111|consen  295 QCIIAFGSETNTVIAICADGSYYKFKFDPKNGGESSRHEYSYFLSLQD  342 (346)
T ss_pred             cEEEEecCCCCeEEEEEeCCcEEEEEeccccccchhhhhhhheeeccc
Confidence            999999999 99999999999999999999999999988888875544

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.3e-42  Score=294.74  Aligned_cols=278  Identities=13%  Similarity=0.212  Sum_probs=237.0

Q ss_pred             cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~  117 (415)
                      ...+|.++|.|++|+|+|+.|++|+ |.++|+||+++......  .++|...+.+++|+||+..+++|+.+     |.|+
T Consensus       110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t--~KgH~~WVlcvawsPDgk~iASG~~d-----g~I~  182 (480)
T KOG0271|consen  110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFT--CKGHKNWVLCVAWSPDGKKIASGSKD-----GSIR  182 (480)
T ss_pred             ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCccee--ecCCccEEEEEEECCCcchhhccccC-----CeEE
Confidence            4689999999999999999999999 99999999998665554  45999999999999999999999998     9999


Q ss_pred             EEECCCCCEEEE-EE-ccCceeEEEEcC-----CeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCce
Q 014977          118 IWDDHQSRCIGE-FA-FRSDVRSVKLSR-----DRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS  187 (415)
Q Consensus       118 vwd~~~~~~~~~-~~-~~~~i~~l~~~~-----~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (415)
                      +||.++|+.+.. +. |...|++++|.|     ..+.++   .||.|+|||+..++++..+.+|..+  +.|+.+-+++ 
T Consensus       183 lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~--VTCvrwGG~g-  259 (480)
T KOG0271|consen  183 LWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTAS--VTCVRWGGEG-  259 (480)
T ss_pred             EecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccc--eEEEEEcCCc-
Confidence            999999977654 55 999999999975     456666   6999999999999999999999984  4555565554 


Q ss_pred             EEEEeCCccCeEEEEEcCC-------------------------------------------------------------
Q 014977          188 VLACPGLQRGQVRIEHFGL-------------------------------------------------------------  206 (415)
Q Consensus       188 ~l~~~g~~dg~v~i~~~~~-------------------------------------------------------------  206 (415)
                       ++++|+.|++|++|....                                                             
T Consensus       260 -liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~er  338 (480)
T KOG0271|consen  260 -LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGER  338 (480)
T ss_pred             -eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcce
Confidence             445688899999876431                                                             


Q ss_pred             -------------------cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEE
Q 014977          207 -------------------NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSI  267 (415)
Q Consensus       207 -------------------~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l  267 (415)
                                         +++..+.+|..-|+.+.||||++++|+++.|.. |++||.++|+.+..|++  |-+.|..+
T Consensus       339 lVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkS-VkLW~g~tGk~lasfRG--Hv~~VYqv  415 (480)
T KOG0271|consen  339 LVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKS-VKLWDGRTGKFLASFRG--HVAAVYQV  415 (480)
T ss_pred             eEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccc-eeeeeCCCcchhhhhhh--ccceeEEE
Confidence                               223345678889999999999999999999999 99999999999999999  88999999


Q ss_pred             EeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccc
Q 014977          268 ALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFS  347 (415)
Q Consensus       268 ~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (415)
                      +|+.|.++|++++.|.+++||++++++-..++..|                                             
T Consensus       416 awsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh---------------------------------------------  450 (480)
T KOG0271|consen  416 AWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGH---------------------------------------------  450 (480)
T ss_pred             EeccCccEEEEcCCCceEEEEEeeeeeecccCCCC---------------------------------------------
Confidence            99999999999999999999999999866544444                                             


Q ss_pred             cccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEE
Q 014977          348 SEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCS  386 (415)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~  386 (415)
                                 .+.++.+.|+|+ .+++.++.|-.+++|.
T Consensus       451 -----------~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  451 -----------ADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             -----------CceEEEEEecCCCceeecCCCceEEEeec
Confidence                       246788999999 6666677788888774

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=100.00  E-value=9.8e-38  Score=267.90  Aligned_cols=339  Identities=33%  Similarity=0.559  Sum_probs=288.4

Q ss_pred             CCCceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECC
Q 014977           43 DEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH  122 (415)
Q Consensus        43 h~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~  122 (415)
                      ....+..+.|+.+...|.+|+....++|+.++.++.....  .....|+.+.|+.....+++..+-     +.+++++.+
T Consensus         4 ~~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~--~~~~~IvEmLFSSSLvaiV~~~qp-----r~Lkv~~~K   76 (391)
T KOG2110|consen    4 KKPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKD--TEGVSIVEMLFSSSLVAIVSIKQP-----RKLKVVHFK   76 (391)
T ss_pred             CCcceeeeeeccceeEEEccCCCceeEEecCchHHhhccc--CCCeEEEEeecccceeEEEecCCC-----ceEEEEEcc
Confidence            3456788889999999999996677999999877744433  678899999999999999998554     889999999


Q ss_pred             CCCEEEEEEccCceeEEEEcCCeEEEEeCCeEEEEEcCCceeeeEEecc-CCCcceEEEecCCCceEEEEeCC-ccCeEE
Q 014977          123 QSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETL-ANLRGLCCLSHHSSTSVLACPGL-QRGQVR  200 (415)
Q Consensus       123 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~g~-~dg~v~  200 (415)
                      .+..+.++.+...|.++.++.+...++....|+|||+++.+.++++..- .++..+++++++..+.++|+.++ ..|.|.
T Consensus        77 k~~~ICe~~fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~  156 (391)
T KOG2110|consen   77 KKTTICEIFFPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV  156 (391)
T ss_pred             cCceEEEEecCCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence            9999999999999999999999999888788999999999999999665 67778999999999999998775 457899


Q ss_pred             EEE-cCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEE
Q 014977          201 IEH-FGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVA  279 (415)
Q Consensus       201 i~~-~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~  279 (415)
                      +|+ .+.+.+..+.+|++.+.+++|+++|.+||++++.|+.||||.+.+|+.+++|+.+.....|.+++|+||+++|++.
T Consensus       157 l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~s  236 (391)
T KOG2110|consen  157 LFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAAS  236 (391)
T ss_pred             EEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEe
Confidence            965 5668889999999999999999999999999999999999999999999999998777899999999999999999


Q ss_pred             eCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCC
Q 014977          280 SDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPE  359 (415)
Q Consensus       280 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (415)
                      +..++|+||.+++....           +++++..+.+        ..+.-.+...+|+|.++.++++.++.|++.++|.
T Consensus       237 S~TeTVHiFKL~~~~~~-----------~~~~p~~~~~--------~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~  297 (391)
T KOG2110|consen  237 SNTETVHIFKLEKVSNN-----------PPESPTAGTS--------WFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPE  297 (391)
T ss_pred             cCCCeEEEEEecccccC-----------CCCCCCCCCc--------ccchhhhhhhhhcchhhhhhhhhccceeEEEccC
Confidence            99999999999987632           1222222222        2222233334488888888999999999999998


Q ss_pred             Cc-eEEEEecCC---CEEEEEEeCCcEEEEEEecCCCCcEEEeeeeecccCC
Q 014977          360 VT-HFIAAFGSQ---NTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVRFLKTV  407 (415)
Q Consensus       360 ~~-~~~~~~~~~---~~i~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (415)
                      .. ...|.+.+.   .++.+++.||.+|+|.+++++||||.+++.+.+....
T Consensus       298 s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~~gGec~lik~h~~~~~~  349 (391)
T KOG2110|consen  298 SGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPKEGGECALIKRHFLDGSI  349 (391)
T ss_pred             CCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCCCCceeEEEEeeccCCcc
Confidence            55 477888752   9999999999999999999999999999888876543

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=5.2e-37  Score=267.24  Aligned_cols=256  Identities=17%  Similarity=0.169  Sum_probs=225.8

Q ss_pred             CCCCccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCC--eEEEEecCCCCC
Q 014977           34 HPQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCN--ILALVGAGDNSQ  110 (415)
Q Consensus        34 ~~~~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~s~~~d~~  110 (415)
                      +.+.....+-+.+|..+.|+.|++.||+|+ +|.++||+......+.  .|.+|...+.++.|+|.  ...+++++.|  
T Consensus       165 ~~l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~--~l~gH~~~v~~~~fhP~~~~~~lat~s~D--  240 (459)
T KOG0272|consen  165 LELVCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ--TLRGHTSRVGAAVFHPVDSDLNLATASAD--  240 (459)
T ss_pred             hhhhhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE--EEeccccceeeEEEccCCCccceeeeccC--
Confidence            334455677889999999999999999999 9999999998765443  46699999999999996  6799999998  


Q ss_pred             CCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCc
Q 014977          111 YPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSST  186 (415)
Q Consensus       111 ~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (415)
                         |++++|++.+..++..+. |...|..++|+|+|++++   .|.+-++||++++..+....+|...+  .++++.++|
T Consensus       241 ---gtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v--~~iaf~~DG  315 (459)
T KOG0272|consen  241 ---GTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGV--FSIAFQPDG  315 (459)
T ss_pred             ---CceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhccccccc--ceeEecCCC
Confidence               999999999999999998 899999999999999999   79999999999999888889998844  555555666


Q ss_pred             eEEEEeCCccCeEEEEEcC-CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEE
Q 014977          187 SVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIY  265 (415)
Q Consensus       187 ~~l~~~g~~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~  265 (415)
                      .+++ +|+.|..-+||+.+ ++++..+.+|..+|.+++|+|+|..||+|+.|++ ++|||++..+.+.++.+  |..-|+
T Consensus       316 SL~~-tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt-~kVWDLR~r~~ly~ipA--H~nlVS  391 (459)
T KOG0272|consen  316 SLAA-TGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNT-CKVWDLRMRSELYTIPA--HSNLVS  391 (459)
T ss_pred             ceee-ccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCc-EEEeeecccccceeccc--ccchhh
Confidence            6655 58899999998765 6889999999999999999999999999999999 99999999999999988  889999


Q ss_pred             EEEeCC-CCCEEEEEeCCCeEEEEEceecccCCCCCCC
Q 014977          266 SIALSP-NVQWLAVASDKGTVHIFSLRVRVVGEDSSSS  302 (415)
Q Consensus       266 ~l~~sp-dg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~  302 (415)
                      .+.|+| .|.+|++++.|++++||.-++..+.+.+..|
T Consensus       392 ~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGH  429 (459)
T KOG0272|consen  392 QVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGH  429 (459)
T ss_pred             heEecccCCeEEEEcccCcceeeecCCCcccchhhcCC
Confidence            999998 7899999999999999999998876544444

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-34  Score=239.16  Aligned_cols=292  Identities=14%  Similarity=0.179  Sum_probs=234.5

Q ss_pred             ccCCCCCCceEEEEEeCCC-CEEEEEe-CCcEEEEEccCCceeE---EEeccCCCeeEEEEeeeCCeEEEEecCCCCCCC
Q 014977           38 AFSDVDEIELISVSWNQDY-GCFAAGT-SCGFRIYNCEPFKETF---RRDLKSGGFRIVEMLFRCNILALVGAGDNSQYP  112 (415)
Q Consensus        38 ~~~~~h~~~V~~l~~sp~g-~~la~g~-d~~v~iw~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~  112 (415)
                      ....+|++.|+.++..+.+ ..+++++ |..+.+|++......+   .+.+.+|...+..+..++++.+.++++.|    
T Consensus         9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD----   84 (315)
T KOG0279|consen    9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWD----   84 (315)
T ss_pred             eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecccc----
Confidence            4578999999999999875 5666777 9999999997543322   44566889999999999999999999998    


Q ss_pred             CCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEecc--CCCcceEEEecCCCc
Q 014977          113 PTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETL--ANLRGLCCLSHHSST  186 (415)
Q Consensus       113 ~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  186 (415)
                       +.+++||+.+++..+.+. |...|.+++|++|.+.++   .|.+|++|++.. .+..++...  .+-+.+++|+|+...
T Consensus        85 -~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~  162 (315)
T KOG0279|consen   85 -GTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESN  162 (315)
T ss_pred             -ceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCC
Confidence             999999999999998888 999999999999999998   799999999765 444444333  444455666666557


Q ss_pred             eEEEEeCCccCeEEEEEcCCcc-eEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEE
Q 014977          187 SVLACPGLQRGQVRIEHFGLNM-IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIY  265 (415)
Q Consensus       187 ~~l~~~g~~dg~v~i~~~~~~~-~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~  265 (415)
                      .+|+. ++.|++|++|+.++.. ...+.+|.+.++.+++||||.++++|+.||. +.+||++.++.++.+.   +...|.
T Consensus       163 p~Ivs-~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~-~~LwdL~~~k~lysl~---a~~~v~  237 (315)
T KOG0279|consen  163 PIIVS-ASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGE-AMLWDLNEGKNLYSLE---AFDIVN  237 (315)
T ss_pred             cEEEE-ccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCce-EEEEEccCCceeEecc---CCCeEe
Confidence            77765 7799999999988754 5567899999999999999999999999999 9999999999988887   567899


Q ss_pred             EEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcc
Q 014977          266 SIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKY  345 (415)
Q Consensus       266 ~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (415)
                      +++|+|+..+|+.+...+ |+|||++++....+++-...                         ++              
T Consensus       238 sl~fspnrywL~~at~~s-IkIwdl~~~~~v~~l~~d~~-------------------------g~--------------  277 (315)
T KOG0279|consen  238 SLCFSPNRYWLCAATATS-IKIWDLESKAVVEELKLDGI-------------------------GP--------------  277 (315)
T ss_pred             eEEecCCceeEeeccCCc-eEEEeccchhhhhhcccccc-------------------------cc--------------
Confidence            999999988887776555 99999999987754433300                         00              


Q ss_pred             cccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEe
Q 014977          346 FSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFD  388 (415)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~  388 (415)
                              .-+.....-..++|+++ ..|+++-.||.|++|++.
T Consensus       278 --------s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  278 --------SSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             --------ccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence                    00111122234899999 778888889999999885

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=2.3e-34  Score=239.74  Aligned_cols=285  Identities=11%  Similarity=0.065  Sum_probs=241.9

Q ss_pred             CCccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCC
Q 014977           36 QTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPT  114 (415)
Q Consensus        36 ~~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~  114 (415)
                      ......+|.+.|+++.|++|.++|++++ ||.+.|||.-+..+.....  -....|...+|+|.+.+++.|+-|     +
T Consensus        47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haip--l~s~WVMtCA~sPSg~~VAcGGLd-----N  119 (343)
T KOG0286|consen   47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIP--LPSSWVMTCAYSPSGNFVACGGLD-----N  119 (343)
T ss_pred             eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEe--cCceeEEEEEECCCCCeEEecCcC-----c
Confidence            3356899999999999999999999999 9999999998766655544  577899999999999999999998     9


Q ss_pred             eEEEEECCCC------CEEEEEE-ccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCC
Q 014977          115 KVIIWDDHQS------RCIGEFA-FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSS  185 (415)
Q Consensus       115 ~i~vwd~~~~------~~~~~~~-~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (415)
                      ...||++.+.      +..+++. |.+.+.++.|.+|+.++.  .|.+..+||+++++.+..|.+|...+..+.++|+ +
T Consensus       120 ~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~-~  198 (343)
T KOG0286|consen  120 KCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPS-D  198 (343)
T ss_pred             eeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCC-C
Confidence            9999998754      2334455 899999999999988888  7899999999999999999999986665666664 5


Q ss_pred             ceEEEEeCCccCeEEEEEcC-CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccE
Q 014977          186 TSVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEI  264 (415)
Q Consensus       186 ~~~l~~~g~~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v  264 (415)
                      ++.+++ |+.|+..++|+.+ +..++.|.+|+..|+++.|.|+|.-+++|+.|++ .++||++..+.+..+.......+|
T Consensus       199 ~ntFvS-g~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~t-cRlyDlRaD~~~a~ys~~~~~~gi  276 (343)
T KOG0286|consen  199 GNTFVS-GGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDAT-CRLYDLRADQELAVYSHDSIICGI  276 (343)
T ss_pred             CCeEEe-cccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCce-eEEEeecCCcEEeeeccCcccCCc
Confidence            556655 7889999998865 5778999999999999999999999999999999 999999999999888865455689


Q ss_pred             EEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCc
Q 014977          265 YSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPK  344 (415)
Q Consensus       265 ~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (415)
                      ++++||..|++|.+|..|.++.+||.-+++..-.+..|                                          
T Consensus       277 tSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GH------------------------------------------  314 (343)
T KOG0286|consen  277 TSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGH------------------------------------------  314 (343)
T ss_pred             eeEEEcccccEEEeeecCCceeEeeccccceEEEeecc------------------------------------------
Confidence            99999999999999999999999999888754322222                                          


Q ss_pred             ccccccceEEEEeCCCceEEEEecCCCEEEEEEe-CCcEEEEE
Q 014977          345 YFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSM-DGSFYRCS  386 (415)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-dg~~~~~~  386 (415)
                                    ++-+.++..+|++..++.++ |..++||.
T Consensus       315 --------------eNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  315 --------------ENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             --------------CCeeEEEEECCCCcEEEecchhHheeecC
Confidence                          34566788999977666666 99999984

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.8e-36  Score=263.83  Aligned_cols=242  Identities=15%  Similarity=0.154  Sum_probs=219.3

Q ss_pred             CCCccCCCCCCceEEEEEeCC--CCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCC
Q 014977           35 PQTAFSDVDEIELISVSWNQD--YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQY  111 (415)
Q Consensus        35 ~~~~~~~~h~~~V~~l~~sp~--g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~  111 (415)
                      ++.....+|...|.++.|+|.  +..||+|+ ||++++|++++...+.  .+.+|...|..+.|+|+|.+|++++.|   
T Consensus       208 ~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~--~l~gH~~RVs~VafHPsG~~L~TasfD---  282 (459)
T KOG0272|consen  208 NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQ--DLEGHLARVSRVAFHPSGKFLGTASFD---  282 (459)
T ss_pred             ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchh--hhhcchhhheeeeecCCCceeeecccc---
Confidence            556678999999999999997  66899999 9999999998754443  355899999999999999999999998   


Q ss_pred             CCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCce
Q 014977          112 PPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS  187 (415)
Q Consensus       112 ~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (415)
                        .+-++||++++..+.... |...|.+++|.+||.+++   .|..-+|||+++++++..+.+|..  .+..++|+|+|.
T Consensus       283 --~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k--~I~~V~fsPNGy  358 (459)
T KOG0272|consen  283 --STWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIK--EILSVAFSPNGY  358 (459)
T ss_pred             --cchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEeccccc--ceeeEeECCCce
Confidence              999999999998776666 999999999999999999   688999999999999999999988  566777777887


Q ss_pred             EEEEeCCccCeEEEEEcCC-cceEEEecCccceEEEEeCC-CCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEE
Q 014977          188 VLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTL-DGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIY  265 (415)
Q Consensus       188 ~l~~~g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp-~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~  265 (415)
                      .||+ |+.|++++||+++. ..+.++.+|..-|+.+.|+| .|.+|++++.|++ ++||...++.+++.+.+  |.+.|.
T Consensus       359 ~lAT-gs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t-~kiWs~~~~~~~ksLaG--He~kV~  434 (459)
T KOG0272|consen  359 HLAT-GSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNT-VKIWSTRTWSPLKSLAG--HEGKVI  434 (459)
T ss_pred             EEee-cCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcc-eeeecCCCcccchhhcC--CccceE
Confidence            7775 88999999999876 45788899999999999998 7889999999999 99999999999999999  899999


Q ss_pred             EEEeCCCCCEEEEEeCCCeEEEEE
Q 014977          266 SIALSPNVQWLAVASDKGTVHIFS  289 (415)
Q Consensus       266 ~l~~spdg~~l~s~s~dg~i~vwd  289 (415)
                      ++.+++|+++|++++.|.++++|.
T Consensus       435 s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  435 SLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             EEEeccCCceEEEeccCceeeecc
Confidence            999999999999999999999995

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.6e-35  Score=251.58  Aligned_cols=242  Identities=16%  Similarity=0.247  Sum_probs=210.4

Q ss_pred             ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC-----CeEEEEecCCCCCC
Q 014977           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-----NILALVGAGDNSQY  111 (415)
Q Consensus        38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~s~~~d~~~  111 (415)
                      ....+|...|.|++|+|||+.||+|+ ||.|++||.+++++.- ..|.+|...|.+++|.|     ....+++++.|   
T Consensus       151 ~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g-~~l~gH~K~It~Lawep~hl~p~~r~las~skD---  226 (480)
T KOG0271|consen  151 FTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIG-RALRGHKKWITALAWEPLHLVPPCRRLASSSKD---  226 (480)
T ss_pred             eeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCccc-ccccCcccceeEEeecccccCCCccceecccCC---
Confidence            34689999999999999999999999 9999999999876644 46779999999999976     45789999988   


Q ss_pred             CCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCc-------------
Q 014977          112 PPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLR-------------  175 (415)
Q Consensus       112 ~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~-------------  175 (415)
                        |.|+|||+..++++..+. |..+|+|+.|-.+|.+..  .|++|++|+..+|++...+.+|.+-+             
T Consensus       227 --g~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRt  304 (480)
T KOG0271|consen  227 --GSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRT  304 (480)
T ss_pred             --CCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhc
Confidence              999999999999999988 999999999998887666  79999999987766555554443211             


Q ss_pred             ----------------------------------------------------------------ceEEEecCCCceEEEE
Q 014977          176 ----------------------------------------------------------------GLCCLSHHSSTSVLAC  191 (415)
Q Consensus       176 ----------------------------------------------------------------~~~~~~~~~~~~~l~~  191 (415)
                                                                                      -+..+.++|+++++|+
T Consensus       305 gaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IAS  384 (480)
T KOG0271|consen  305 GAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIAS  384 (480)
T ss_pred             cccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEE
Confidence                                                                            2344557778888876


Q ss_pred             eCCccCeEEEEEc-CCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeC
Q 014977          192 PGLQRGQVRIEHF-GLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALS  270 (415)
Q Consensus       192 ~g~~dg~v~i~~~-~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~s  270 (415)
                       ++.|..|++|+. +++.+..+++|-..|+.++|+.|.++|++|+.|.+ +++||+++.+....+.+  |...|.++.|+
T Consensus       385 -aSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsT-LKvw~V~tkKl~~DLpG--h~DEVf~vDws  460 (480)
T KOG0271|consen  385 -ASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDST-LKVWDVRTKKLKQDLPG--HADEVFAVDWS  460 (480)
T ss_pred             -eecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCce-EEEEEeeeeeecccCCC--CCceEEEEEec
Confidence             779999999875 56778899999999999999999999999999999 99999999999999998  88899999999


Q ss_pred             CCCCEEEEEeCCCeEEEEE
Q 014977          271 PNVQWLAVASDKGTVHIFS  289 (415)
Q Consensus       271 pdg~~l~s~s~dg~i~vwd  289 (415)
                      |||+.+++|+.|..+++|.
T Consensus       461 pDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  461 PDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             CCCceeecCCCceEEEeec
Confidence            9999999999999999995

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=7.1e-34  Score=231.79  Aligned_cols=250  Identities=18%  Similarity=0.230  Sum_probs=215.3

Q ss_pred             CCCceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECC
Q 014977           43 DEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH  122 (415)
Q Consensus        43 h~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~  122 (415)
                      .+..|+.+.+.||++.||++....||+||+.+........+.++...+..+.|..++..+.++++|     |+++|||++
T Consensus        39 ~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseD-----gt~kIWdlR  113 (311)
T KOG0315|consen   39 PDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSED-----GTVKIWDLR  113 (311)
T ss_pred             CccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCC-----ceEEEEecc
Confidence            356799999999999999999999999999987665556677888999999999999999999998     999999999


Q ss_pred             CCCEEEEEEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeE
Q 014977          123 QSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQV  199 (415)
Q Consensus       123 ~~~~~~~~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v  199 (415)
                      .-.+.+.+++..+|+++..+|+..-++   .+|.|++||+....+...+-.. ....+..+...++|..+++ +...|..
T Consensus       114 ~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe-~~~~i~sl~v~~dgsml~a-~nnkG~c  191 (311)
T KOG0315|consen  114 SLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPE-DDTSIQSLTVMPDGSMLAA-ANNKGNC  191 (311)
T ss_pred             CcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCC-CCcceeeEEEcCCCcEEEE-ecCCccE
Confidence            988888999999999999999755554   6899999999887666655332 2246677777888888876 5689999


Q ss_pred             EEEEcCC-------cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC-cEEEEEecCCCcccEEEEEeCC
Q 014977          200 RIEHFGL-------NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG-TRLQEVRRGVDRAEIYSIALSP  271 (415)
Q Consensus       200 ~i~~~~~-------~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~-~~~~~~~~~~~~~~v~~l~~sp  271 (415)
                      ++|+...       .++..+++|.+.+..+.+|||+++||+++.|.+ ++||++.+. +....+.+  |...+++.+||.
T Consensus       192 yvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdkt-v~iwn~~~~~kle~~l~g--h~rWvWdc~FS~  268 (311)
T KOG0315|consen  192 YVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKT-VKIWNTDDFFKLELVLTG--HQRWVWDCAFSA  268 (311)
T ss_pred             EEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCce-EEEEecCCceeeEEEeec--CCceEEeeeecc
Confidence            9998754       456778999999999999999999999999999 999999887 55556666  778999999999


Q ss_pred             CCCEEEEEeCCCeEEEEEceecccCCCCCCC
Q 014977          272 NVQWLAVASDKGTVHIFSLRVRVVGEDSSSS  302 (415)
Q Consensus       272 dg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~  302 (415)
                      ||+||++|+.|+.+++|+++.+++..+...|
T Consensus       269 dg~YlvTassd~~~rlW~~~~~k~v~qy~gh  299 (311)
T KOG0315|consen  269 DGEYLVTASSDHTARLWDLSAGKEVRQYQGH  299 (311)
T ss_pred             CccEEEecCCCCceeecccccCceeeecCCc
Confidence            9999999999999999999999987665555

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1e-32  Score=243.51  Aligned_cols=276  Identities=20%  Similarity=0.296  Sum_probs=237.4

Q ss_pred             CCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEE
Q 014977           41 DVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIW  119 (415)
Q Consensus        41 ~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vw  119 (415)
                      ......|++++|+.+|.+||+|. +|.++||+.... ..  ..+..|...|.++.|+..+.++++++.|     +++.+|
T Consensus       232 ~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~-l~--~tl~~HkgPI~slKWnk~G~yilS~~vD-----~ttilw  303 (524)
T KOG0273|consen  232 VPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGN-LI--STLGQHKGPIFSLKWNKKGTYILSGGVD-----GTTILW  303 (524)
T ss_pred             CCccCCcceEEecCCCCeEEEeecCcEEEEEecCch-hh--hhhhccCCceEEEEEcCCCCEEEeccCC-----ccEEEE
Confidence            33457899999999999999999 999999998752 22  2456899999999999999999999998     999999


Q ss_pred             ECCCCCEEEEEE-ccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCcc
Q 014977          120 DDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR  196 (415)
Q Consensus       120 d~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  196 (415)
                      |..+++..+.+. |..+-.++.|-.+..++.  .|+.|+|+.+....++.++.+|.+  .+.++.++|.+.+|++ ++.|
T Consensus       304 d~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g--~V~alk~n~tg~LLaS-~SdD  380 (524)
T KOG0273|consen  304 DAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHG--EVNALKWNPTGSLLAS-CSDD  380 (524)
T ss_pred             eccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccC--ceEEEEECCCCceEEE-ecCC
Confidence            999999999999 555658899988888877  799999999998899999999888  5667777888888876 7899


Q ss_pred             CeEEEEEc-CCcceEEEecCccceEEEEeCCCC---------CEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEE
Q 014977          197 GQVRIEHF-GLNMIKLINAHDSHIACFTLTLDG---------LLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYS  266 (415)
Q Consensus       197 g~v~i~~~-~~~~~~~~~~~~~~i~~l~~sp~g---------~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~  266 (415)
                      ++++||.. +......+.+|...|+.+.|+|.|         ..|++++.|++ |++||+..+.++++|..  |..+|.+
T Consensus       381 ~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dst-V~lwdv~~gv~i~~f~k--H~~pVys  457 (524)
T KOG0273|consen  381 GTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDST-VKLWDVESGVPIHTLMK--HQEPVYS  457 (524)
T ss_pred             CeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCe-EEEEEccCCceeEeecc--CCCceEE
Confidence            99999994 456788899999999999999964         47999999999 99999999999999988  8899999


Q ss_pred             EEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCccc
Q 014977          267 IALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYF  346 (415)
Q Consensus       267 l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (415)
                      ++|+|+|++||+|+.||.|.+|++++++-.+                                                 
T Consensus       458 vafS~~g~ylAsGs~dg~V~iws~~~~~l~~-------------------------------------------------  488 (524)
T KOG0273|consen  458 VAFSPNGRYLASGSLDGCVHIWSTKTGKLVK-------------------------------------------------  488 (524)
T ss_pred             EEecCCCcEEEecCCCCeeEeccccchheeE-------------------------------------------------
Confidence            9999999999999999999999999998432                                                 


Q ss_pred             ccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEE
Q 014977          347 SSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSF  387 (415)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~  387 (415)
                             .. ...+...-+.|+.+ ++|.++-+||.+.+..+
T Consensus       489 -------s~-~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl  522 (524)
T KOG0273|consen  489 -------SY-QGTGGIFELCWNAAGDKLGACASDGSVCVLDL  522 (524)
T ss_pred             -------ee-cCCCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence                   11 11234566889988 77777777999988776

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.9e-33  Score=240.78  Aligned_cols=283  Identities=14%  Similarity=0.175  Sum_probs=244.7

Q ss_pred             CCCccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCC
Q 014977           35 PQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPP  113 (415)
Q Consensus        35 ~~~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~  113 (415)
                      ++.....+|..+|+.+-|+|+-..+++++ |++|++||..+++.  ...+++|...+.++.|+..|+++++++.|     
T Consensus        99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~--e~~LrGHt~sv~di~~~a~Gk~l~tcSsD-----  171 (406)
T KOG0295|consen   99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL--ERSLRGHTDSVFDISFDASGKYLATCSSD-----  171 (406)
T ss_pred             CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhh--hhhhhccccceeEEEEecCccEEEecCCc-----
Confidence            45566788999999999999999999998 99999999998765  45677999999999999999999999998     


Q ss_pred             CeEEEEECCC-CCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceE
Q 014977          114 TKVIIWDDHQ-SRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSV  188 (415)
Q Consensus       114 ~~i~vwd~~~-~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (415)
                      -.+++||..+ .++++... |...|.++.|-|.|.+++   .|.+|+.|++.++-++.++.+|..  .+..+.++.+|.+
T Consensus       172 l~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~e--wvr~v~v~~DGti  249 (406)
T KOG0295|consen  172 LSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSE--WVRMVRVNQDGTI  249 (406)
T ss_pred             cchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchH--hEEEEEecCCeeE
Confidence            6799999876 34555444 899999999999998888   799999999999999999999887  7777788888888


Q ss_pred             EEEeCCccCeEEEEEcCC-cceEEEecCccceEEEEeCCC---------------CCEEEEEeCCCcEEEEEECCCCcEE
Q 014977          189 LACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLD---------------GLLLATASTRGTLIRIFNTVDGTRL  252 (415)
Q Consensus       189 l~~~g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~---------------g~~l~s~s~dg~~I~vwd~~~~~~~  252 (415)
                      +|+ ++.|.++++|.... ++...++.|+.+|.+++|.|.               ++++++++.|++ |++||+.++.++
T Consensus       250 ~As-~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDkt-Ik~wdv~tg~cL  327 (406)
T KOG0295|consen  250 IAS-CSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKT-IKIWDVSTGMCL  327 (406)
T ss_pred             EEe-cCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccce-EEEEeccCCeEE
Confidence            876 88999999998765 466778999999999999773               358999999999 999999999999


Q ss_pred             EEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCC
Q 014977          253 QEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPG  332 (415)
Q Consensus       253 ~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (415)
                      .++.+  |...|.+++|+|.|+||+++.+|+++++||++++++.+++..+                              
T Consensus       328 ~tL~g--hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah------------------------------  375 (406)
T KOG0295|consen  328 FTLVG--HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAH------------------------------  375 (406)
T ss_pred             EEEec--ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCC------------------------------
Confidence            99999  8999999999999999999999999999999999987644333                              


Q ss_pred             CcccccccccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEE
Q 014977          333 SSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCS  386 (415)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~  386 (415)
                                                +..+..+.|+.+ ..+++|+-|-.+.+|.
T Consensus       376 --------------------------~hfvt~lDfh~~~p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  376 --------------------------EHFVTSLDFHKTAPYVVTGSVDQTVKVWE  404 (406)
T ss_pred             --------------------------cceeEEEecCCCCceEEeccccceeeeee
Confidence                                      234556677766 6777777799888885

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.9e-31  Score=246.51  Aligned_cols=300  Identities=14%  Similarity=0.281  Sum_probs=237.2

Q ss_pred             CCCCCceEEEEEeCCCCEEEEEe--CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEE
Q 014977           41 DVDEIELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII  118 (415)
Q Consensus        41 ~~h~~~V~~l~~sp~g~~la~g~--d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~v  118 (415)
                      .-...+|..++|+..|.+||.|+  -|.+.||++....-+++  .++|-..+.++.++||+.++++|++|     |+|+|
T Consensus       304 Sis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlK--QQgH~~~i~~l~YSpDgq~iaTG~eD-----gKVKv  376 (893)
T KOG0291|consen  304 SISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLK--QQGHSDRITSLAYSPDGQLIATGAED-----GKVKV  376 (893)
T ss_pred             ecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeee--ccccccceeeEEECCCCcEEEeccCC-----CcEEE
Confidence            34457899999999999999999  57999999987544444  44889999999999999999999998     99999


Q ss_pred             EECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCC
Q 014977          119 WDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL  194 (415)
Q Consensus       119 wd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  194 (415)
                      ||...|-|+.++. |...|+.+.|+..++.++   .||+|+.||+...+..+++..+ .++...+++.+|.|.++.+ |+
T Consensus       377 Wn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P-~p~QfscvavD~sGelV~A-G~  454 (893)
T KOG0291|consen  377 WNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSP-EPIQFSCVAVDPSGELVCA-GA  454 (893)
T ss_pred             EeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCC-CceeeeEEEEcCCCCEEEe-ec
Confidence            9999999999998 999999999999998888   7999999999998888888654 4577888999988877765 65


Q ss_pred             ccC-eEEEEEcC-CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC-cEEEEEecCCCcccEEEEEeCC
Q 014977          195 QRG-QVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG-TRLQEVRRGVDRAEIYSIALSP  271 (415)
Q Consensus       195 ~dg-~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~-~~~~~~~~~~~~~~v~~l~~sp  271 (415)
                      .|. .|.+|... ++.+-.+.+|.++|.+++|+|+|..|++++.|.+ |++||+-.. ..+.++.   +...+..++|.|
T Consensus       455 ~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkT-VRiW~if~s~~~vEtl~---i~sdvl~vsfrP  530 (893)
T KOG0291|consen  455 QDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKT-VRIWDIFSSSGTVETLE---IRSDVLAVSFRP  530 (893)
T ss_pred             cceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccce-EEEEEeeccCceeeeEe---eccceeEEEEcC
Confidence            554 57778865 5667788999999999999999999999999999 999998654 3444555   455799999999


Q ss_pred             CCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccc
Q 014977          272 NVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWS  351 (415)
Q Consensus       272 dg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (415)
                      ||+-||+++.||.|.+||++.+.....+..+.+                      ..+.+...         ..+..+  
T Consensus       531 dG~elaVaTldgqItf~d~~~~~q~~~IdgrkD----------------------~~~gR~~~---------D~~ta~--  577 (893)
T KOG0291|consen  531 DGKELAVATLDGQITFFDIKEAVQVGSIDGRKD----------------------LSGGRKET---------DRITAE--  577 (893)
T ss_pred             CCCeEEEEEecceEEEEEhhhceeeccccchhh----------------------cccccccc---------ceeehh--
Confidence            999999999999999999998876544433311                      00000000         000000  


Q ss_pred             eEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977          352 FAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~  389 (415)
                         -..-...-..+.++++ +-|+++|....|.+|.++.
T Consensus       578 ---~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~  613 (893)
T KOG0291|consen  578 ---NSAKGKTFTTICYSADGKCILAGGESNSICIYDVPE  613 (893)
T ss_pred             ---hcccCCceEEEEEcCCCCEEEecCCcccEEEEECch
Confidence               0000022345788999 7778888889999999986

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=8.7e-32  Score=251.86  Aligned_cols=244  Identities=16%  Similarity=0.246  Sum_probs=216.4

Q ss_pred             CCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCce-----------------------------eEEEeccCCCeeEE
Q 014977           42 VDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE-----------------------------TFRRDLKSGGFRIV   91 (415)
Q Consensus        42 ~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~-----------------------------~~~~~~~~~~~~~~   91 (415)
                      .....++|+.|++|+++||.|. |..|++|.+.+.+.                             .....+-+|...|.
T Consensus       376 nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVy  455 (707)
T KOG0263|consen  376 NTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVY  455 (707)
T ss_pred             EcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCcee
Confidence            3456799999999999999999 99999999874210                             01122347888999


Q ss_pred             EEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeE
Q 014977           92 EMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQ  167 (415)
Q Consensus        92 ~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~  167 (415)
                      ...|+|+..+|++++.|     +++++|.+.+..++..++ |..+|.++.|+|-|.+++   .|++.++|.....++++.
T Consensus       456 g~sFsPd~rfLlScSED-----~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRi  530 (707)
T KOG0263|consen  456 GCSFSPDRRFLLSCSED-----SSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRI  530 (707)
T ss_pred             eeeecccccceeeccCC-----cceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhh
Confidence            99999999999999998     999999999999999888 999999999999999999   699999999999999999


Q ss_pred             EeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEc-CCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEEC
Q 014977          168 IETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHF-GLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNT  246 (415)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~-~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~  246 (415)
                      +.+|...+.++.|+|+  ..++++ |+.|.+|++|+. ++..++.+.+|.++|.+++|||+|++|++|+.|+. |.+||+
T Consensus       531 faghlsDV~cv~FHPN--s~Y~aT-GSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~-I~iWDl  606 (707)
T KOG0263|consen  531 FAGHLSDVDCVSFHPN--SNYVAT-GSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGL-IKIWDL  606 (707)
T ss_pred             hcccccccceEEECCc--cccccc-CCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCc-EEEEEc
Confidence            9999987777766665  457765 899999999886 46788999999999999999999999999999999 999999


Q ss_pred             CCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977          247 VDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       247 ~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                      .+++.+..+.+  |.+.|.++.|+.||..||+|+.|.+|++||+......
T Consensus       607 ~~~~~v~~l~~--Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~  654 (707)
T KOG0263|consen  607 ANGSLVKQLKG--HTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL  654 (707)
T ss_pred             CCCcchhhhhc--ccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence            99999999999  7899999999999999999999999999999876543

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=2.1e-31  Score=222.96  Aligned_cols=281  Identities=16%  Similarity=0.219  Sum_probs=232.5

Q ss_pred             ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (415)
Q Consensus        38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i  116 (415)
                      ....+|++.|+.+.|+|+|.+||+|+ |..|.+|++....+.+. .+.+|...|..+.|..++..+++++.|     .+|
T Consensus        41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~-~lkgHsgAVM~l~~~~d~s~i~S~gtD-----k~v  114 (338)
T KOG0265|consen   41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFW-VLKGHSGAVMELHGMRDGSHILSCGTD-----KTV  114 (338)
T ss_pred             hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccccee-eeccccceeEeeeeccCCCEEEEecCC-----ceE
Confidence            35789999999999999999999999 99999999765333332 345899999999999999999999998     999


Q ss_pred             EEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE----eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEE
Q 014977          117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC  191 (415)
Q Consensus       117 ~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  191 (415)
                      +.||.++|+.++.++ |..-|+.+.-+.-|..++    .|+++++||+++...++.+....   ...++.+...+..+.+
T Consensus       115 ~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~ky---qltAv~f~d~s~qv~s  191 (338)
T KOG0265|consen  115 RGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKY---QLTAVGFKDTSDQVIS  191 (338)
T ss_pred             EEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccce---eEEEEEecccccceee
Confidence            999999999999998 888899998666666665    69999999999888887775433   5667777666666665


Q ss_pred             eCCccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC----cEEEEEecCCCcc--cE
Q 014977          192 PGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG----TRLQEVRRGVDRA--EI  264 (415)
Q Consensus       192 ~g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~----~~~~~~~~~~~~~--~v  264 (415)
                       |.-|+.|++|+.+. .....+.+|..+|+.+..+++|.++.+-+.|.+ +++||++-.    .++..+.++.|.-  ..
T Consensus       192 -ggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~t-vrvwd~rp~~p~~R~v~if~g~~hnfeknl  269 (338)
T KOG0265|consen  192 -GGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNT-VRVWDVRPFAPSQRCVKIFQGHIHNFEKNL  269 (338)
T ss_pred             -ccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccce-EEEEEecccCCCCceEEEeecchhhhhhhc
Confidence             77899999998754 667889999999999999999999999999999 999998743    4577787765543  45


Q ss_pred             EEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCc
Q 014977          265 YSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPK  344 (415)
Q Consensus       265 ~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (415)
                      ..++|+|+++.+.+|+.|..+++||.......                                                
T Consensus       270 L~cswsp~~~~i~ags~dr~vyvwd~~~r~~l------------------------------------------------  301 (338)
T KOG0265|consen  270 LKCSWSPNGTKITAGSADRFVYVWDTTSRRIL------------------------------------------------  301 (338)
T ss_pred             ceeeccCCCCccccccccceEEEeecccccEE------------------------------------------------
Confidence            67799999999999999999999998776532                                                


Q ss_pred             ccccccceEEEEeCC--CceEEEEecCC-CEEEEEEeCCcEEEEEE
Q 014977          345 YFSSEWSFAQFHIPE--VTHFIAAFGSQ-NTVVIVSMDGSFYRCSF  387 (415)
Q Consensus       345 ~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~i~~~~~dg~~~~~~~  387 (415)
                                +++|.  +.+..+.|+|. ..|+.+++|-+||+=++
T Consensus       302 ----------yklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lgei  337 (338)
T KOG0265|consen  302 ----------YKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGEI  337 (338)
T ss_pred             ----------EEcCCcceeEEEeeecCCCcEEEEeccCceeEeecc
Confidence                      33332  56778999997 77778888998887544

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=5.1e-30  Score=230.81  Aligned_cols=278  Identities=18%  Similarity=0.263  Sum_probs=228.7

Q ss_pred             CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEE
Q 014977           40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII  118 (415)
Q Consensus        40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~v  118 (415)
                      ..+|.++|.+++|+|++++|++++ ++.+++|++.+.+....  +..+...+..+.|.+++..+++++.+     +.|++
T Consensus         5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~~-----~~i~i   77 (289)
T cd00200           5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRT--LKGHTGPVRDVAASADGTYLASGSSD-----KTIRL   77 (289)
T ss_pred             hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEE--EecCCcceeEEEECCCCCEEEEEcCC-----CeEEE
Confidence            458999999999999999999999 99999999987654333  33566677789999998788888777     99999


Q ss_pred             EECCCCCEEEEEE-ccCceeEEEEcCCeEEEE--e-CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCC
Q 014977          119 WDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV--L-EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL  194 (415)
Q Consensus       119 wd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~--~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  194 (415)
                      |++.+++.+..+. +...+.++.|++++.+++  . ++.|++||+.+++....+..+..  .+.++.+++++.++++ +.
T Consensus        78 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~-~~  154 (289)
T cd00200          78 WDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTD--WVNSVAFSPDGTFVAS-SS  154 (289)
T ss_pred             EEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCC--cEEEEEEcCcCCEEEE-Ec
Confidence            9999888877777 777999999999977776  3 89999999998888888876665  4555556665666665 55


Q ss_pred             ccCeEEEEEcC-CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCC
Q 014977          195 QRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNV  273 (415)
Q Consensus       195 ~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg  273 (415)
                      .++.|++|+.. .+.+..+..|...+.++.|+|+++.+++++.++. |++||+++++.+..+..  +...+.++.|+|++
T Consensus       155 ~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~-i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~  231 (289)
T cd00200         155 QDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT-IKLWDLSTGKCLGTLRG--HENGVNSVAFSPDG  231 (289)
T ss_pred             CCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCc-EEEEECCCCceecchhh--cCCceEEEEEcCCC
Confidence            69999998876 5667778889999999999999999999999999 99999999988888865  67799999999999


Q ss_pred             CEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceE
Q 014977          274 QWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFA  353 (415)
Q Consensus       274 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (415)
                      .++++++.||.|++|++.+++...                                                        
T Consensus       232 ~~~~~~~~~~~i~i~~~~~~~~~~--------------------------------------------------------  255 (289)
T cd00200         232 YLLASGSEDGTIRVWDLRTGECVQ--------------------------------------------------------  255 (289)
T ss_pred             cEEEEEcCCCcEEEEEcCCceeEE--------------------------------------------------------
Confidence            999988889999999998765331                                                        


Q ss_pred             EEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEE
Q 014977          354 QFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCS  386 (415)
Q Consensus       354 ~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~  386 (415)
                      .+.........+.|+++ +.+++++.||.+.+|+
T Consensus       256 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         256 TLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             EccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            11112234556789888 7888888899999984

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-30  Score=215.82  Aligned_cols=248  Identities=13%  Similarity=0.171  Sum_probs=202.3

Q ss_pred             ccCCCCCccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCC
Q 014977           31 SFGHPQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNS  109 (415)
Q Consensus        31 ~~~~~~~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~  109 (415)
                      .++.+. ....||...|..+..++||.+.++++ |+.+++||+.+++...+  |.+|...+.+++++++...+++++.| 
T Consensus        51 ~~G~~~-r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~--f~GH~~dVlsva~s~dn~qivSGSrD-  126 (315)
T KOG0279|consen   51 KYGVPV-RRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRR--FVGHTKDVLSVAFSTDNRQIVSGSRD-  126 (315)
T ss_pred             ccCcee-eeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEE--EEecCCceEEEEecCCCceeecCCCc-
Confidence            344433 34678999999999999999999999 99999999998755444  55999999999999999999999998 


Q ss_pred             CCCCCeEEEEECCCCCEEEEEE---ccCceeEEEEcCC--eEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEe
Q 014977          110 QYPPTKVIIWDDHQSRCIGEFA---FRSDVRSVKLSRD--RIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLS  181 (415)
Q Consensus       110 ~~~~~~i~vwd~~~~~~~~~~~---~~~~i~~l~~~~~--~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  181 (415)
                          ++|++|++.. .+..++.   +...|.++.|+|+  ..+++   .|++|++||+++.+..+.+.+|...+  ..+.
T Consensus       127 ----kTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v--~t~~  199 (315)
T KOG0279|consen  127 ----KTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYV--NTVT  199 (315)
T ss_pred             ----ceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccE--EEEE
Confidence                9999999654 4444444   3789999999998  56666   79999999999999999999998844  4555


Q ss_pred             cCCCceEEEEeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCC--
Q 014977          182 HHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGV--  259 (415)
Q Consensus       182 ~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~--  259 (415)
                      .+|+|.+.++ |+.||.+.+|+.+...-.....|...|.+++|+|+.-.|+.+.. .. |+|||+.++..+..++...  
T Consensus       200 vSpDGslcas-Ggkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~-~s-IkIwdl~~~~~v~~l~~d~~g  276 (315)
T KOG0279|consen  200 VSPDGSLCAS-GGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATA-TS-IKIWDLESKAVVEELKLDGIG  276 (315)
T ss_pred             ECCCCCEEec-CCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccC-Cc-eEEEeccchhhhhhccccccc
Confidence            5566767765 88999999999887665556678999999999999877766654 45 9999999998776664310  


Q ss_pred             -----CcccEEEEEeCCCCCEEEEEeCCCeEEEEEcee
Q 014977          260 -----DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV  292 (415)
Q Consensus       260 -----~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~  292 (415)
                           ......+++|++||+.|++|-.|+.|++|.+..
T Consensus       277 ~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~~  314 (315)
T KOG0279|consen  277 PSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVAK  314 (315)
T ss_pred             cccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEeec
Confidence                 122457789999999999999999999999864

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=6.6e-30  Score=228.67  Aligned_cols=285  Identities=15%  Similarity=0.137  Sum_probs=225.3

Q ss_pred             cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEe-ccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRD-LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i  116 (415)
                      ....|..-|+++.|+|||.+||+.+ ||.+.+||-.+++++.... -..|...|.++.|+||...+++.+.|     .++
T Consensus       185 s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaD-----kt~  259 (603)
T KOG0318|consen  185 SFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSAD-----KTI  259 (603)
T ss_pred             cccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCC-----ceE
Confidence            3577999999999999999999988 9999999999888766543 23788899999999999999999988     999


Q ss_pred             EEEECCCCCEEEEEEcc----CceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEE
Q 014977          117 IIWDDHQSRCIGEFAFR----SDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC  191 (415)
Q Consensus       117 ~vwd~~~~~~~~~~~~~----~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  191 (415)
                      +|||+.+.++++++...    .....+.|..+..+.+ .+|.|.+++..+...++.+.+|...++.+  ..++++.+|.+
T Consensus       260 KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaL--tv~~d~~~i~S  337 (603)
T KOG0318|consen  260 KIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITAL--TVSPDGKTIYS  337 (603)
T ss_pred             EEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEE--EEcCCCCEEEe
Confidence            99999999999999843    3344555665555545 89999999999888888888888744444  44444455543


Q ss_pred             eCCccCeEEEEEcC------------------------------------------------------------------
Q 014977          192 PGLQRGQVRIEHFG------------------------------------------------------------------  205 (415)
Q Consensus       192 ~g~~dg~v~i~~~~------------------------------------------------------------------  205 (415)
                       |+.||.|.-|+..                                                                  
T Consensus       338 -gsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d  416 (603)
T KOG0318|consen  338 -GSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSD  416 (603)
T ss_pred             -eccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCC
Confidence             6666666555432                                                                  


Q ss_pred             ---------------------------------------------------------C---cceEEEecCccceEEEEeC
Q 014977          206 ---------------------------------------------------------L---NMIKLINAHDSHIACFTLT  225 (415)
Q Consensus       206 ---------------------------------------------------------~---~~~~~~~~~~~~i~~l~~s  225 (415)
                                                                               +   .....+..|.++|+++++|
T Consensus       417 ~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vayS  496 (603)
T KOG0318|consen  417 GGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYS  496 (603)
T ss_pred             CCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEEC
Confidence                                                                     1   1112344688899999999


Q ss_pred             CCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCC
Q 014977          226 LDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLST  305 (415)
Q Consensus       226 p~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~  305 (415)
                      ||+.+||++...+. +.+||+.+.+. ..-....|.+.|.+++|+|+..++|+|+.|..|.||+++.+.+...+.+.   
T Consensus       497 pd~~yla~~Da~rk-vv~yd~~s~~~-~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknA---  571 (603)
T KOG0318|consen  497 PDGAYLAAGDASRK-VVLYDVASREV-KTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNA---  571 (603)
T ss_pred             CCCcEEEEeccCCc-EEEEEcccCce-ecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccc---
Confidence            99999999999999 99999988876 33333348899999999999999999999999999999988753211111   


Q ss_pred             CCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCCCEEEEEEeCCcEEEE
Q 014977          306 PSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRC  385 (415)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dg~~~~~  385 (415)
                                                                          +...++.+.|-.++.++.+|.|..+.+|
T Consensus       572 ----------------------------------------------------H~~gVn~v~wlde~tvvSsG~Da~iK~W  599 (603)
T KOG0318|consen  572 ----------------------------------------------------HLGGVNSVAWLDESTVVSSGQDANIKVW  599 (603)
T ss_pred             ----------------------------------------------------cccCceeEEEecCceEEeccCcceeEEe
Confidence                                                                1134778999999999999999999999


Q ss_pred             EEe
Q 014977          386 SFD  388 (415)
Q Consensus       386 ~~~  388 (415)
                      ++.
T Consensus       600 ~v~  602 (603)
T KOG0318|consen  600 NVT  602 (603)
T ss_pred             ccc
Confidence            875

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.98  E-value=6.4e-30  Score=213.35  Aligned_cols=237  Identities=16%  Similarity=0.204  Sum_probs=203.9

Q ss_pred             CCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCC--c--eeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCe
Q 014977           41 DVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPF--K--ETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK  115 (415)
Q Consensus        41 ~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~  115 (415)
                      +-....|..++|+|.|+++|+|+ |+...||++.+.  +  ....+.+.+|...+.+..|-+|+.++.+.++      .+
T Consensus        94 pl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD------~T  167 (343)
T KOG0286|consen   94 PLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGD------MT  167 (343)
T ss_pred             ecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCC------ce
Confidence            33456799999999999999999 999999999743  1  2344557789999999999998777666554      89


Q ss_pred             EEEEECCCCCEEEEEE-ccCceeEEEEcC-CeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEE
Q 014977          116 VIIWDDHQSRCIGEFA-FRSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLA  190 (415)
Q Consensus       116 i~vwd~~~~~~~~~~~-~~~~i~~l~~~~-~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  190 (415)
                      ..+||+++++.+..+. |.+.|.++.++| +++.++   -|+..++||++.+.+++.|.+|...+..++|.|++  .-++
T Consensus       168 CalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G--~afa  245 (343)
T KOG0286|consen  168 CALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSG--DAFA  245 (343)
T ss_pred             EEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCC--Ceee
Confidence            9999999999999998 999999999999 888777   69999999999999999999999977777776655  4565


Q ss_pred             EeCCccCeEEEEEcCCcc-eEEEe--cCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEE
Q 014977          191 CPGLQRGQVRIEHFGLNM-IKLIN--AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSI  267 (415)
Q Consensus       191 ~~g~~dg~v~i~~~~~~~-~~~~~--~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l  267 (415)
                       +|++|++.++++++... +..+.  ....+|++++||-.|++|++|..|.+ +.+||.-.++.+..+.+  |++.|.++
T Consensus       246 -tGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~-c~vWDtlk~e~vg~L~G--HeNRvScl  321 (343)
T KOG0286|consen  246 -TGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFT-CNVWDTLKGERVGVLAG--HENRVSCL  321 (343)
T ss_pred             -ecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCc-eeEeeccccceEEEeec--cCCeeEEE
Confidence             49999999998877643 44443  22467999999999999999999999 99999999999999998  89999999


Q ss_pred             EeCCCCCEEEEEeCCCeEEEEE
Q 014977          268 ALSPNVQWLAVASDKGTVHIFS  289 (415)
Q Consensus       268 ~~spdg~~l~s~s~dg~i~vwd  289 (415)
                      ..+|||.-+++|+.|.+++||.
T Consensus       322 ~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  322 GVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             EECCCCcEEEecchhHheeecC
Confidence            9999999999999999999994

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.98  E-value=1.6e-30  Score=213.64  Aligned_cols=247  Identities=17%  Similarity=0.183  Sum_probs=204.0

Q ss_pred             ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCe
Q 014977           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTK  115 (415)
Q Consensus        38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~  115 (415)
                      ....+|...|.+++|+.+|..|++|+ |+.+.+|+++...........+|...+..++|++ +...+++++.|     ..
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~d-----k~   88 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGD-----KT   88 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCC-----ce
Confidence            56788999999999999999999999 9999999999876555555567888888888886 34555666555     99


Q ss_pred             EEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEe
Q 014977          116 VIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP  192 (415)
Q Consensus       116 i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  192 (415)
                      |++||++.+++...+.....-.-+.|+|+|.+++   .|..|...|.++.+.....+...   ....+.++.++.+++.+
T Consensus        89 ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~---e~ne~~w~~~nd~Fflt  165 (313)
T KOG1407|consen   89 IRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKF---EVNEISWNNSNDLFFLT  165 (313)
T ss_pred             EEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccc---eeeeeeecCCCCEEEEe
Confidence            9999999999999999777667789999998888   68889999998887776654333   23334443333344332


Q ss_pred             CCccCeEEE-EEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCC
Q 014977          193 GLQRGQVRI-EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSP  271 (415)
Q Consensus       193 g~~dg~v~i-~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp  271 (415)
                       ...|.|.| --...+++..+++|.....+|.|+|+|++||+|+.|.. +.+||+...-+++.+..  +.-+|..+.||.
T Consensus       166 -~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAl-vSLWD~~ELiC~R~isR--ldwpVRTlSFS~  241 (313)
T KOG1407|consen  166 -NGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADAL-VSLWDVDELICERCISR--LDWPVRTLSFSH  241 (313)
T ss_pred             -cCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccce-eeccChhHhhhheeecc--ccCceEEEEecc
Confidence             24689998 23467899999999999999999999999999999999 99999998888888888  788999999999


Q ss_pred             CCCEEEEEeCCCeEEEEEceecccC
Q 014977          272 NVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       272 dg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                      ||++||+|++|..|-|=++++|.+.
T Consensus       242 dg~~lASaSEDh~IDIA~vetGd~~  266 (313)
T KOG1407|consen  242 DGRMLASASEDHFIDIAEVETGDRV  266 (313)
T ss_pred             CcceeeccCccceEEeEecccCCeE
Confidence            9999999999999999999999854

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.98  E-value=2.7e-30  Score=221.05  Aligned_cols=291  Identities=17%  Similarity=0.189  Sum_probs=240.6

Q ss_pred             CccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCe
Q 014977           37 TAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK  115 (415)
Q Consensus        37 ~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~  115 (415)
                      .....+|.+.|.|+++.|.+++|++|+ |++++|||+.+++....  +.+|-..+..+++++...++.+++.|     +.
T Consensus       144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lklt--ltGhi~~vr~vavS~rHpYlFs~ged-----k~  216 (460)
T KOG0285|consen  144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLT--LTGHIETVRGVAVSKRHPYLFSAGED-----KQ  216 (460)
T ss_pred             hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEe--ecchhheeeeeeecccCceEEEecCC-----Ce
Confidence            355689999999999999999999999 99999999999775554  55888899999999999999999998     99


Q ss_pred             EEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEE
Q 014977          116 VIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC  191 (415)
Q Consensus       116 i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  191 (415)
                      |+.||++..+.++.+. |-..|.+++.+|.-..++   .|.+++|||+++...+..+.+|..++..+.+.+..  ..++ 
T Consensus       217 VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~d--pqvi-  293 (460)
T KOG0285|consen  217 VKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTD--PQVI-  293 (460)
T ss_pred             eEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCC--CceE-
Confidence            9999999999999887 899999999999887777   79999999999999999999999977655554422  2344 


Q ss_pred             eCCccCeEEEEEcC-CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeC
Q 014977          192 PGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALS  270 (415)
Q Consensus       192 ~g~~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~s  270 (415)
                      +|+.|++|++|+.. ++....+..|...+.+++.+|....+|+++.|.  |+-|++..|..+..+.+  |.+-|+.++..
T Consensus       294 t~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn--ik~w~~p~g~f~~nlsg--h~~iintl~~n  369 (460)
T KOG0285|consen  294 TGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN--IKQWKLPEGEFLQNLSG--HNAIINTLSVN  369 (460)
T ss_pred             EecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc--ceeccCCccchhhcccc--ccceeeeeeec
Confidence            58999999998866 566778899999999999999999999999885  99999999999999888  88899999998


Q ss_pred             CCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCccccccc
Q 014977          271 PNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEW  350 (415)
Q Consensus       271 pdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (415)
                      .|| ++++|++.|.|.+||.+++-+-+.....                                      ++|-.+.++ 
T Consensus       370 sD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~--------------------------------------vqpGSl~sE-  409 (460)
T KOG0285|consen  370 SDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTI--------------------------------------VQPGSLESE-  409 (460)
T ss_pred             cCc-eEEEcCCceEEEEEecCcCccccccccc--------------------------------------ccCCccccc-
Confidence            876 6778999999999999998754211000                                      111111111 


Q ss_pred             ceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEecC
Q 014977          351 SFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDPV  390 (415)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~~  390 (415)
                               .....++|-.. .+|+++..|-+|.+|.-|+.
T Consensus       410 ---------agI~as~fDktg~rlit~eadKtIk~~keDe~  441 (460)
T KOG0285|consen  410 ---------AGIFASCFDKTGSRLITGEADKTIKMYKEDEH  441 (460)
T ss_pred             ---------cceeEEeecccCceEEeccCCcceEEEecccc
Confidence                     22344556544 88999999999999998874

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.98  E-value=9.4e-30  Score=243.16  Aligned_cols=247  Identities=17%  Similarity=0.264  Sum_probs=209.4

Q ss_pred             CCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEE
Q 014977           42 VDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD  120 (415)
Q Consensus        42 ~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd  120 (415)
                      .|...|.++.|+++|+.|++++ ++.+++|+...........+.+|...|..+.|++++.++++++.|     ++|++||
T Consensus       157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D-----~tiriwd  231 (456)
T KOG0266|consen  157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDD-----KTLRIWD  231 (456)
T ss_pred             cccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCC-----ceEEEee
Confidence            3478999999999999999998 999999999665422233345899999999999999999999998     9999999


Q ss_pred             C-CCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCc
Q 014977          121 D-HQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ  195 (415)
Q Consensus       121 ~-~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  195 (415)
                      + ..+..++++. |...|++++|+|++++++   .|++|+|||+++++++..+.+|...  +.++++.+++.+|++ ++.
T Consensus       232 ~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~--is~~~f~~d~~~l~s-~s~  308 (456)
T KOG0266|consen  232 LKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDG--ISGLAFSPDGNLLVS-ASY  308 (456)
T ss_pred             ccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCc--eEEEEECCCCCEEEE-cCC
Confidence            9 5558888887 999999999999997777   7999999999999999999999984  455566666778876 578


Q ss_pred             cCeEEEEEcCCcc---eEEEecCccc--eEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCc-ccEEEEEe
Q 014977          196 RGQVRIEHFGLNM---IKLINAHDSH--IACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDR-AEIYSIAL  269 (415)
Q Consensus       196 dg~v~i~~~~~~~---~~~~~~~~~~--i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~-~~v~~l~~  269 (415)
                      |+.|++|+.....   ...+..+...  ++.+.|+|++.+|++++.|+. +++||+..+..+..+..+... ..+.+...
T Consensus       309 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~-~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~  387 (456)
T KOG0266|consen  309 DGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRT-LKLWDLRSGKSVGTYTGHSNLVRCIFSPTL  387 (456)
T ss_pred             CccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCe-EEEEEccCCcceeeecccCCcceeEecccc
Confidence            9999999988766   4566666555  999999999999999999999 999999999999888884222 14555666


Q ss_pred             CCCCCEEEEEeCCCeEEEEEceecccCC
Q 014977          270 SPNVQWLAVASDKGTVHIFSLRVRVVGE  297 (415)
Q Consensus       270 spdg~~l~s~s~dg~i~vwd~~~~~~~~  297 (415)
                      ++.+.++++|+.|+.|++|++.++....
T Consensus       388 ~~~~~~i~sg~~d~~v~~~~~~s~~~~~  415 (456)
T KOG0266|consen  388 STGGKLIYSGSEDGSVYVWDSSSGGILQ  415 (456)
T ss_pred             cCCCCeEEEEeCCceEEEEeCCccchhh
Confidence            8899999999999999999999976543

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.98  E-value=3.2e-29  Score=207.09  Aligned_cols=286  Identities=12%  Similarity=0.177  Sum_probs=226.4

Q ss_pred             CccCCCCCCceEEEEEeCC-CCEEEEEe-CCcEEEEEccC-CceeEEEec-cCCCeeEEEEeeeCCeEEEEecCCCCCCC
Q 014977           37 TAFSDVDEIELISVSWNQD-YGCFAAGT-SCGFRIYNCEP-FKETFRRDL-KSGGFRIVEMLFRCNILALVGAGDNSQYP  112 (415)
Q Consensus        37 ~~~~~~h~~~V~~l~~sp~-g~~la~g~-d~~v~iw~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~s~~~d~~~~  112 (415)
                      .....+|++.|..++|+|- |..||+++ |+.|+||+... .....+..+ ..|...+.+++|+|.+.+|++++.|    
T Consensus         7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD----   82 (312)
T KOG0645|consen    7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFD----   82 (312)
T ss_pred             EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeecc----
Confidence            3457899999999999998 89999999 99999999984 222233223 3678889999999999999999998    


Q ss_pred             CCeEEEEECCCC--CEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcC---CceeeeEEeccCCCcceEEEecC
Q 014977          113 PTKVIIWDDHQS--RCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFV---DLKLLHQIETLANLRGLCCLSHH  183 (415)
Q Consensus       113 ~~~i~vwd~~~~--~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~  183 (415)
                       .++.||.-..+  +++..++ |...|.+++|+++|.+++   .|..|-||.+.   ..++...++.|...+..+.++|.
T Consensus        83 -~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt  161 (312)
T KOG0645|consen   83 -ATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPT  161 (312)
T ss_pred             -ceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCC
Confidence             99999986544  6677777 999999999999999999   79999999985   34678888999987777777775


Q ss_pred             CCceEEEEeCCccCeEEEEEcC-C---cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCC
Q 014977          184 SSTSVLACPGLQRGQVRIEHFG-L---NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGV  259 (415)
Q Consensus       184 ~~~~~l~~~g~~dg~v~i~~~~-~---~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~  259 (415)
                      .+  +|+ +++.|.+|++|... .   .++.++.+|...|.+++|++.|..|++++.|++ ++||-..+     .+.. .
T Consensus       162 ~d--lL~-S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~t-v~Iw~~~~-----~~~~-~  231 (312)
T KOG0645|consen  162 ED--LLF-SCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGT-VSIWRLYT-----DLSG-M  231 (312)
T ss_pred             cc--eeE-EeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcc-eEeeeecc-----Ccch-h
Confidence            44  555 58899999996544 2   578999999999999999999999999999999 99998652     2222 2


Q ss_pred             CcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccc
Q 014977          260 DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMR  339 (415)
Q Consensus       260 ~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (415)
                      |...+..+.|.  ...|++++.|+.|++|.-...-..                                    ..++.+.
T Consensus       232 ~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~------------------------------------p~~~l~~  273 (312)
T KOG0645|consen  232 HSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDE------------------------------------PSWNLLA  273 (312)
T ss_pred             cccceEeeeec--ccceEeccCCCEEEEEEecCCCCC------------------------------------chHHHHH
Confidence            66789999998  457999999999999987732111                                    1111111


Q ss_pred             cccCcccccccceEEEEeCCCceEEEEecCC--CEEEEEEeCCcEEEEEEe
Q 014977          340 GVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ--NTVVIVSMDGSFYRCSFD  388 (415)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~dg~~~~~~~~  388 (415)
                      .             .-...+..++.++|.|.  ++|++++.||.+.+|++.
T Consensus       274 ~-------------~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  274 K-------------KEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             h-------------hhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence            0             11223346678999994  999999999999999874

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=5e-30  Score=241.92  Aligned_cols=293  Identities=11%  Similarity=0.186  Sum_probs=248.3

Q ss_pred             CCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEE
Q 014977           42 VDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD  120 (415)
Q Consensus        42 ~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd  120 (415)
                      .....|..++|+|...++.++- .|.|++||..-...+  ..|..|...+..+.|+++.-++++|++|     ..|+||+
T Consensus         7 skSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli--~rFdeHdGpVRgv~FH~~qplFVSGGDD-----ykIkVWn   79 (1202)
T KOG0292|consen    7 SKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLI--DRFDEHDGPVRGVDFHPTQPLFVSGGDD-----YKIKVWN   79 (1202)
T ss_pred             cccccccceecCCCCCEEEEeecCceeeeehhhhhhHH--hhhhccCCccceeeecCCCCeEEecCCc-----cEEEEEe
Confidence            3466799999999999999999 999999999854433  3366899999999999999999999998     9999999


Q ss_pred             CCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCcc
Q 014977          121 DHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR  196 (415)
Q Consensus       121 ~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  196 (415)
                      .++.+++.++. |-..|+.+.|++.-.+++   .|.+|+||+..+++++..+.+|.+  .++|..++|...++++ ++.|
T Consensus        80 Yk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnH--YVMcAqFhptEDlIVS-aSLD  156 (1202)
T KOG0292|consen   80 YKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNH--YVMCAQFHPTEDLIVS-ASLD  156 (1202)
T ss_pred             cccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCce--EEEeeccCCccceEEE-eccc
Confidence            99999999987 999999999999999988   689999999999999999999998  7777777776556654 8899


Q ss_pred             CeEEEEEcCCc------------------------------ceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEEC
Q 014977          197 GQVRIEHFGLN------------------------------MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNT  246 (415)
Q Consensus       197 g~v~i~~~~~~------------------------------~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~  246 (415)
                      .+|++|+..+-                              ....+.+|...|+-++|+|.-.++++|+.|.. |++|.+
T Consensus       157 QTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRq-VKlWrm  235 (1202)
T KOG0292|consen  157 QTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQ-VKLWRM  235 (1202)
T ss_pred             ceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcce-eeEEEe
Confidence            99999998650                              12456799999999999999999999999999 999998


Q ss_pred             CCCcE--EEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCC
Q 014977          247 VDGTR--LQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLIS  324 (415)
Q Consensus       247 ~~~~~--~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (415)
                      ...+.  +.+.++  |.+.|.++-|+|...+|++.++|++|+|||+.+.+..                            
T Consensus       236 netKaWEvDtcrg--H~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v----------------------------  285 (1202)
T KOG0292|consen  236 NETKAWEVDTCRG--HYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSV----------------------------  285 (1202)
T ss_pred             ccccceeehhhhc--ccCCcceEEecCccceeEecCCCccEEEEecccccce----------------------------
Confidence            65543  345566  8889999999999999999999999999999887744                            


Q ss_pred             CCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCCCEEEEEEeCCcEEEEEEecCCCCcEEEeeeeec
Q 014977          325 PSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVRF  403 (415)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~  403 (415)
                                                  .+|+-..+--.+++.+|+-.+++++.|+-+.+|.++.+...-|+-....-|
T Consensus       286 ----------------------------~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRErpa~~v~~n~LfY  336 (1202)
T KOG0292|consen  286 ----------------------------QTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERPAYAVNGNGLFY  336 (1202)
T ss_pred             ----------------------------eeeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCceEEEcCCEEEE
Confidence                                        355555566678899999999999999999999999766555554333333

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.97  E-value=4.5e-30  Score=226.92  Aligned_cols=280  Identities=18%  Similarity=0.251  Sum_probs=227.5

Q ss_pred             CCCCCceEEEEEeCCCC-EEEEEe-CCcEEEEEccC------CceeEEEec------cCCCeeEEEEeeeCCeEEEEecC
Q 014977           41 DVDEIELISVSWNQDYG-CFAAGT-SCGFRIYNCEP------FKETFRRDL------KSGGFRIVEMLFRCNILALVGAG  106 (415)
Q Consensus        41 ~~h~~~V~~l~~sp~g~-~la~g~-d~~v~iw~~~~------~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~s~~  106 (415)
                      .+|+.+|.+.+|+|-.. .|++|+ +-+.++|++..      .+..++..+      ......++++.|+.+|.+|++|.
T Consensus       175 l~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~  254 (524)
T KOG0273|consen  175 LRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGS  254 (524)
T ss_pred             ccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEee
Confidence            34999999999999776 889988 99999999963      111111111      12345789999999999999999


Q ss_pred             CCCCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEec
Q 014977          107 DNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSH  182 (415)
Q Consensus       107 ~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  182 (415)
                      .+     |.+++|+ ..|..+.++. |+++|.++.|+.+|.+++   .|+++.+||..++...+.+..|..+  ...+.|
T Consensus       255 ~~-----G~~riw~-~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~--~lDVdW  326 (524)
T KOG0273|consen  255 ED-----GEARIWN-KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAP--ALDVDW  326 (524)
T ss_pred             cC-----cEEEEEe-cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCC--ccceEE
Confidence            98     9999999 5677777776 999999999999999998   6999999999999999999888764  233444


Q ss_pred             CCCceEEEEeCCccCeEEEEEc-CCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCc
Q 014977          183 HSSTSVLACPGLQRGQVRIEHF-GLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDR  261 (415)
Q Consensus       183 ~~~~~~l~~~g~~dg~v~i~~~-~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~  261 (415)
                      -.+.. +++ ++.|+.|+++.. ...++.++.+|.+.|.++.|+|.|.+|++++.|++ ++||..........+..  |.
T Consensus       327 ~~~~~-F~t-s~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~T-lkiWs~~~~~~~~~l~~--Hs  401 (524)
T KOG0273|consen  327 QSNDE-FAT-SSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGT-LKIWSMGQSNSVHDLQA--HS  401 (524)
T ss_pred             ecCce-Eee-cCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCe-eEeeecCCCcchhhhhh--hc
Confidence            43333 444 568999999554 45788999999999999999999999999999999 99999988888888888  88


Q ss_pred             ccEEEEEeCCCC---------CEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCC
Q 014977          262 AEIYSIALSPNV---------QWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPG  332 (415)
Q Consensus       262 ~~v~~l~~spdg---------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (415)
                      ..|..+.|+|+|         ..|++++.|++|++||+..+.+..                                   
T Consensus       402 kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~-----------------------------------  446 (524)
T KOG0273|consen  402 KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIH-----------------------------------  446 (524)
T ss_pred             cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeE-----------------------------------
Confidence            899999999975         479999999999999999998653                                   


Q ss_pred             CcccccccccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977          333 SSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~  389 (415)
                                           .|.-...+++.++|+|+ ..++.++-||.|.+|+...
T Consensus       447 ---------------------~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~  483 (524)
T KOG0273|consen  447 ---------------------TLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKT  483 (524)
T ss_pred             ---------------------eeccCCCceEEEEecCCCcEEEecCCCCeeEeccccc
Confidence                                 22222357788999999 5555555599999998875

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=9.8e-29  Score=253.04  Aligned_cols=241  Identities=17%  Similarity=0.242  Sum_probs=194.3

Q ss_pred             CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCce------eEEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCC
Q 014977           40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE------TFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQY  111 (415)
Q Consensus        40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~------~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~  111 (415)
                      ...|...|.+++|+|+|++||+|+ |+.|+||++.....      .....+ .+...+.++.|++ .+..+++++.|   
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~las~~~D---  554 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKLSGICWNSYIKSQVASSNFE---  554 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCceeeEEeccCCCCEEEEEeCC---
Confidence            345899999999999999999999 99999999753110      011112 2344677788876 46778888887   


Q ss_pred             CCCeEEEEECCCCCEEEEEE-ccCceeEEEEcC-CeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecC-CC
Q 014977          112 PPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHH-SS  185 (415)
Q Consensus       112 ~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~-~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~  185 (415)
                        +.|++||+.+++.+..+. |...|.+++|+| ++.+++   .|+.|++||+.+++.+..+..+.   .+.++.+. ++
T Consensus       555 --g~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~---~v~~v~~~~~~  629 (793)
T PLN00181        555 --GVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKA---NICCVQFPSES  629 (793)
T ss_pred             --CeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCC---CeEEEEEeCCC
Confidence              999999999999888887 899999999996 666665   69999999999988888876543   34555553 34


Q ss_pred             ceEEEEeCCccCeEEEEEcCCc--ceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC------cEEEEEec
Q 014977          186 TSVLACPGLQRGQVRIEHFGLN--MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG------TRLQEVRR  257 (415)
Q Consensus       186 ~~~l~~~g~~dg~v~i~~~~~~--~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~------~~~~~~~~  257 (415)
                      +.++++ |+.||.|++|+.+..  .+..+.+|...|.++.|. ++.+|++++.|+. |+|||+..+      +.+..+.+
T Consensus       630 g~~lat-gs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~-ikiWd~~~~~~~~~~~~l~~~~g  706 (793)
T PLN00181        630 GRSLAF-GSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNT-LKLWDLSMSISGINETPLHSFMG  706 (793)
T ss_pred             CCEEEE-EeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCE-EEEEeCCCCccccCCcceEEEcC
Confidence            666765 779999999998653  456778999999999997 7789999999999 999999743      56777877


Q ss_pred             CCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977          258 GVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (415)
Q Consensus       258 ~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  294 (415)
                        |...+..++|+|++.+|++|+.|+.|++|+...+.
T Consensus       707 --h~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~  741 (793)
T PLN00181        707 --HTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPM  741 (793)
T ss_pred             --CCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCC
Confidence              77889999999999999999999999999976553

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.97  E-value=5.7e-29  Score=203.20  Aligned_cols=263  Identities=17%  Similarity=0.222  Sum_probs=209.9

Q ss_pred             CEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCC--EEEEEE-c
Q 014977           57 GCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR--CIGEFA-F  132 (415)
Q Consensus        57 ~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~--~~~~~~-~  132 (415)
                      -+|++++ |.+||+|...++.....  ++.....+..+...|+...|+.++.      ..|++||+.++.  ++.++. |
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rT--iqh~dsqVNrLeiTpdk~~LAaa~~------qhvRlyD~~S~np~Pv~t~e~h   82 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRT--IQHPDSQVNRLEITPDKKDLAAAGN------QHVRLYDLNSNNPNPVATFEGH   82 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEE--EecCccceeeEEEcCCcchhhhccC------CeeEEEEccCCCCCceeEEecc
Confidence            3788888 99999999998765444  4466778889999999999999887      799999998875  577777 8


Q ss_pred             cCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCc-c
Q 014977          133 RSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN-M  208 (415)
Q Consensus       133 ~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~-~  208 (415)
                      ...|+++.|..+|+.+.   .||+++|||++...+.+.+. +..++..+.++++  ...|++ |..+|.|++|+.... +
T Consensus        83 ~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpn--QteLis-~dqsg~irvWDl~~~~c  158 (311)
T KOG0315|consen   83 TKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPN--QTELIS-GDQSGNIRVWDLGENSC  158 (311)
T ss_pred             CCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCC--cceEEe-ecCCCcEEEEEccCCcc
Confidence            89999999999999999   79999999999866665554 3465666666655  334544 889999999998765 3


Q ss_pred             eEE-EecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC------cEEEEEecCCCcccEEEEEeCCCCCEEEEEeC
Q 014977          209 IKL-INAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG------TRLQEVRRGVDRAEIYSIALSPNVQWLAVASD  281 (415)
Q Consensus       209 ~~~-~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~------~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~  281 (415)
                      ... +......|.++...|||.+|+.+...|. .++|++-..      +++.+++.  |.+.+..+.+|||+++||+++.
T Consensus       159 ~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~-cyvW~l~~~~~~s~l~P~~k~~a--h~~~il~C~lSPd~k~lat~ss  235 (311)
T KOG0315|consen  159 THELIPEDDTSIQSLTVMPDGSMLAAANNKGN-CYVWRLLNHQTASELEPVHKFQA--HNGHILRCLLSPDVKYLATCSS  235 (311)
T ss_pred             ccccCCCCCcceeeEEEcCCCcEEEEecCCcc-EEEEEccCCCccccceEhhheec--ccceEEEEEECCCCcEEEeecC
Confidence            333 3445678999999999999999999999 999998664      35566777  8889999999999999999999


Q ss_pred             CCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCc
Q 014977          282 KGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVT  361 (415)
Q Consensus       282 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (415)
                      |.+++||++++--+.+.                                                       ..+-...-
T Consensus       236 dktv~iwn~~~~~kle~-------------------------------------------------------~l~gh~rW  260 (311)
T KOG0315|consen  236 DKTVKIWNTDDFFKLEL-------------------------------------------------------VLTGHQRW  260 (311)
T ss_pred             CceEEEEecCCceeeEE-------------------------------------------------------EeecCCce
Confidence            99999999887622110                                                       11111134


Q ss_pred             eEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977          362 HFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       362 ~~~~~~~~~-~~i~~~~~dg~~~~~~~~~  389 (415)
                      +..|+|+.+ ..|+++++|+.+++|.+..
T Consensus       261 vWdc~FS~dg~YlvTassd~~~rlW~~~~  289 (311)
T KOG0315|consen  261 VWDCAFSADGEYLVTASSDHTARLWDLSA  289 (311)
T ss_pred             EEeeeeccCccEEEecCCCCceeeccccc
Confidence            567999999 7788888899999999876

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.97  E-value=5.9e-31  Score=228.59  Aligned_cols=239  Identities=14%  Similarity=0.233  Sum_probs=202.3

Q ss_pred             CCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEE
Q 014977           42 VDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD  120 (415)
Q Consensus        42 ~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd  120 (415)
                      .-+..|..+.|.|+|+.|++|+ .|.+.+|+.....  ++..++.|...|.++.|+.++.++++++.+     |.|++|+
T Consensus        94 Kvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fn--FEtilQaHDs~Vr~m~ws~~g~wmiSgD~g-----G~iKyWq  166 (464)
T KOG0284|consen   94 KVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFN--FETILQAHDSPVRTMKWSHNGTWMISGDKG-----GMIKYWQ  166 (464)
T ss_pred             ccccceeeEEEcCCCceeEeecccccEEEecCceee--HHHHhhhhcccceeEEEccCCCEEEEcCCC-----ceEEecc
Confidence            3456899999999999999999 9999999985432  333346899999999999999999999998     9999999


Q ss_pred             CCCCCEEEEEE--ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCc
Q 014977          121 DHQSRCIGEFA--FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ  195 (415)
Q Consensus       121 ~~~~~~~~~~~--~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  195 (415)
                      ..-.. ++.+.  |...|++++|+|+...++   .|+.|+|||....+....+.+|.-.+.  ++.|+|...+|++ |+.
T Consensus       167 pnmnn-Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVk--svdWHP~kgLias-gsk  242 (464)
T KOG0284|consen  167 PNMNN-VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVK--SVDWHPTKGLIAS-GSK  242 (464)
T ss_pred             cchhh-hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcc--eeccCCccceeEE-ccC
Confidence            65443 33343  569999999999766666   799999999988888888888887444  5555665556665 889


Q ss_pred             cCeEEEEEc-CCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCC-CC
Q 014977          196 RGQVRIEHF-GLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSP-NV  273 (415)
Q Consensus       196 dg~v~i~~~-~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp-dg  273 (415)
                      |..|++|+. ++.++.++.+|+..|..+.|+|++++|++++.|.. ++++|+++.+.++.+++  |...|+++.|+| ..
T Consensus       243 DnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~-~kv~DiR~mkEl~~~r~--Hkkdv~~~~WhP~~~  319 (464)
T KOG0284|consen  243 DNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQS-CKVFDIRTMKELFTYRG--HKKDVTSLTWHPLNE  319 (464)
T ss_pred             CceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCce-EEEEehhHhHHHHHhhc--chhhheeeccccccc
Confidence            999999775 56889999999999999999999999999999999 99999998999999998  889999999999 45


Q ss_pred             CEEEEEeCCCeEEEEEceecc
Q 014977          274 QWLAVASDKGTVHIFSLRVRV  294 (415)
Q Consensus       274 ~~l~s~s~dg~i~vwd~~~~~  294 (415)
                      .+|.+|+.||.|..|.+...+
T Consensus       320 ~lftsgg~Dgsvvh~~v~~~~  340 (464)
T KOG0284|consen  320 SLFTSGGSDGSVVHWVVGLEE  340 (464)
T ss_pred             cceeeccCCCceEEEeccccc
Confidence            688899999999999998444

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.97  E-value=7.5e-31  Score=232.60  Aligned_cols=283  Identities=14%  Similarity=0.181  Sum_probs=232.3

Q ss_pred             ccCCCCCCceEEEEEeC-CCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCe
Q 014977           38 AFSDVDEIELISVSWNQ-DYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK  115 (415)
Q Consensus        38 ~~~~~h~~~V~~l~~sp-~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~  115 (415)
                      ....+|...|.++.|.| .+.+|++++ |+.|+||++-..+.++ +.+.+|...|.++.|+.++..+.+++.|     +.
T Consensus       208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~l-rtf~gH~k~Vrd~~~s~~g~~fLS~sfD-----~~  281 (503)
T KOG0282|consen  208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCL-RTFKGHRKPVRDASFNNCGTSFLSASFD-----RF  281 (503)
T ss_pred             eeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCccee-hhhhcchhhhhhhhccccCCeeeeeecc-----ee
Confidence            45689999999999999 888889988 9999999998745444 4566999999999999999999999998     99


Q ss_pred             EEEEECCCCCEEEEEEccCceeEEEEcCCe-EEE-E--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEE
Q 014977          116 VIIWDDHQSRCIGEFAFRSDVRSVKLSRDR-IVV-V--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC  191 (415)
Q Consensus       116 i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~-~~~-~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  191 (415)
                      |++||+++|+++..+.....+.++.|+|++ ..+ +  .|+.|+.||+++++.++.+..|-.  .+..+.+-+++..+++
T Consensus       282 lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg--~i~~i~F~~~g~rFis  359 (503)
T KOG0282|consen  282 LKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLG--AILDITFVDEGRRFIS  359 (503)
T ss_pred             eeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhh--heeeeEEccCCceEee
Confidence            999999999999999999999999999988 333 3  799999999999999999988877  5556666667777776


Q ss_pred             eCCccCeEEEEEcCCcceEEE--ecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC---cEEEEEecCCCcccEEE
Q 014977          192 PGLQRGQVRIEHFGLNMIKLI--NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG---TRLQEVRRGVDRAEIYS  266 (415)
Q Consensus       192 ~g~~dg~v~i~~~~~~~~~~~--~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~---~~~~~~~~~~~~~~v~~  266 (415)
                       .++|+.++||..+......+  ..+.....++..+|++.+++.-+.|.. |.+|.+...   ...+.+.++.-.+.-..
T Consensus       360 -sSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~-i~ifs~~~~~r~nkkK~feGh~vaGys~~  437 (503)
T KOG0282|consen  360 -SSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNY-IAIFSTVPPFRLNKKKRFEGHSVAGYSCQ  437 (503)
T ss_pred             -eccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCce-EEEEecccccccCHhhhhcceeccCceee
Confidence             56899999998876544333  233445668999999999999999999 999986532   22345666444556678


Q ss_pred             EEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCccc
Q 014977          267 IALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYF  346 (415)
Q Consensus       267 l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (415)
                      +.|||||.+|++|..||.+.+||.++-+...                                                 
T Consensus       438 v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~-------------------------------------------------  468 (503)
T KOG0282|consen  438 VDFSPDGRTLCSGDSDGKVNFWDWKTTKLVS-------------------------------------------------  468 (503)
T ss_pred             EEEcCCCCeEEeecCCccEEEeechhhhhhh-------------------------------------------------
Confidence            9999999999999999999999999987543                                                 


Q ss_pred             ccccceEEEEeCCCceEEEEecCC--CEEEEEEeCCcEEEEE
Q 014977          347 SSEWSFAQFHIPEVTHFIAAFGSQ--NTVVIVSMDGSFYRCS  386 (415)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~dg~~~~~~  386 (415)
                             +++.+++....+.|+|.  ..+++++-||.|++|.
T Consensus       469 -------~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  469 -------KLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             -------ccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence                   33444455666889997  8888888899999984

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=1.2e-28  Score=229.28  Aligned_cols=246  Identities=16%  Similarity=0.196  Sum_probs=205.7

Q ss_pred             cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~  117 (415)
                      ...+|...|++++++|||+++|+|. ||.|+|||...+-+..  +|..|...+..+.|+..+..+++.+-|     |+|+
T Consensus       345 KQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~v--TFteHts~Vt~v~f~~~g~~llssSLD-----GtVR  417 (893)
T KOG0291|consen  345 KQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFV--TFTEHTSGVTAVQFTARGNVLLSSSLD-----GTVR  417 (893)
T ss_pred             eccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEE--EeccCCCceEEEEEEecCCEEEEeecC-----CeEE
Confidence            4678999999999999999999999 9999999998755444  466999999999999999999999998     9999


Q ss_pred             EEECCCCCEEEEEEcc--CceeEEEEcCCeEEEE----eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEE
Q 014977          118 IWDDHQSRCIGEFAFR--SDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC  191 (415)
Q Consensus       118 vwd~~~~~~~~~~~~~--~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  191 (415)
                      .||+...+..+++..+  ....+++..|.|.+++    ..-.|++|++++|+.+..+.+|..|+..+++++.  +..|++
T Consensus       418 AwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~--~~~LaS  495 (893)
T KOG0291|consen  418 AWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPD--GSLLAS  495 (893)
T ss_pred             eeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccc--cCeEEe
Confidence            9999999999999854  4556788888899888    2346999999999999999999997766666555  456665


Q ss_pred             eCCccCeEEEEEcCCc--ceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEec------------
Q 014977          192 PGLQRGQVRIEHFGLN--MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR------------  257 (415)
Q Consensus       192 ~g~~dg~v~i~~~~~~--~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~------------  257 (415)
                       |+.|.+|++|+.-..  .+.++ .+...+..++|+|+|+.||++..||. |.+||.+.+..+..+.+            
T Consensus       496 -~SWDkTVRiW~if~s~~~vEtl-~i~sdvl~vsfrPdG~elaVaTldgq-Itf~d~~~~~q~~~IdgrkD~~~gR~~~D  572 (893)
T KOG0291|consen  496 -GSWDKTVRIWDIFSSSGTVETL-EIRSDVLAVSFRPDGKELAVATLDGQ-ITFFDIKEAVQVGSIDGRKDLSGGRKETD  572 (893)
T ss_pred             -ccccceEEEEEeeccCceeeeE-eeccceeEEEEcCCCCeEEEEEecce-EEEEEhhhceeeccccchhhccccccccc
Confidence             899999999986544  44444 36778899999999999999999999 99999987655533322            


Q ss_pred             ------CCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977          258 ------GVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       258 ------~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                            .......+.+++++||..|++|+..+.|.||++.++.-.
T Consensus       573 ~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vll  617 (893)
T KOG0291|consen  573 RITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLL  617 (893)
T ss_pred             eeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhhee
Confidence                  112246889999999999999999999999999988643

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=7.3e-30  Score=218.85  Aligned_cols=244  Identities=11%  Similarity=0.203  Sum_probs=217.6

Q ss_pred             CccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCe
Q 014977           37 TAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK  115 (415)
Q Consensus        37 ~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~  115 (415)
                      .....+|.+.|..++|+..|++||+++ |-.+++||.+......+ .+.+|...+.++.|-|.+..+++++.|     .+
T Consensus       143 e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~k-s~~gh~h~vS~V~f~P~gd~ilS~srD-----~t  216 (406)
T KOG0295|consen  143 ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIK-SLIGHEHGVSSVFFLPLGDHILSCSRD-----NT  216 (406)
T ss_pred             hhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHH-HhcCcccceeeEEEEecCCeeeecccc-----cc
Confidence            455789999999999999999999999 77799999987433332 344888899999999999999999998     99


Q ss_pred             EEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCC-------
Q 014977          116 VIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHS-------  184 (415)
Q Consensus       116 i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-------  184 (415)
                      |+.|++.+|.++.++. |...|..++.+.||.+++   .|.++++|-+.++++...+..|..++.++++++..       
T Consensus       217 ik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~  296 (406)
T KOG0295|consen  217 IKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISE  296 (406)
T ss_pred             eeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhh
Confidence            9999999999999998 899999999999999999   68999999999999988999999988888777532       


Q ss_pred             -----C-ceEEEEeCCccCeEEEEEcC-CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEec
Q 014977          185 -----S-TSVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR  257 (415)
Q Consensus       185 -----~-~~~l~~~g~~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~  257 (415)
                           + +.++ .+++.|++|++|+.. +.++.++.+|...|..++|+|.|+||+++.+|++ +++||++++++++++..
T Consensus       297 at~~~~~~~~l-~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDkt-lrvwdl~~~~cmk~~~a  374 (406)
T KOG0295|consen  297 ATGSTNGGQVL-GSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKT-LRVWDLKNLQCMKTLEA  374 (406)
T ss_pred             ccCCCCCccEE-EeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCc-EEEEEeccceeeeccCC
Confidence                 1 2344 458999999998875 5788999999999999999999999999999999 99999999999999997


Q ss_pred             CCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEc
Q 014977          258 GVDRAEIYSIALSPNVQWLAVASDKGTVHIFSL  290 (415)
Q Consensus       258 ~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~  290 (415)
                        |..-|+++.|+.+-.++++|+-|.++++|.-
T Consensus       375 --h~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  375 --HEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             --CcceeEEEecCCCCceEEeccccceeeeeec
Confidence              7779999999999999999999999999974

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.97  E-value=3.9e-28  Score=217.41  Aligned_cols=287  Identities=14%  Similarity=0.195  Sum_probs=219.9

Q ss_pred             CCcccccccCCC-CCCCCCCCCcccccc----cccCC-CCCccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCC
Q 014977            3 STVSTSREILPP-GPFGSPNAGASASAS----ASFGH-PQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPF   75 (415)
Q Consensus         3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~   75 (415)
                      +.|+++|+.... |+-+..+.-..+-..    ..... .....-.+|..+++-..|+|.|.++|+|. .|.||||+....
T Consensus        12 ~lPst~Rg~~~~ig~dpkgd~ilY~nGksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~   91 (603)
T KOG0318|consen   12 SLPSTERGVPIIIGGDPKGDNILYTNGKSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQK   91 (603)
T ss_pred             CCCcccCCcceEeccCCCCCeEEEeCCCEEEEEECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCc
Confidence            567788887665 322222221111111    11111 12456689999999999999999999999 999999999876


Q ss_pred             ceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE----e
Q 014977           76 KETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV----L  150 (415)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~----~  150 (415)
                      +.+++.+++.-...+.++.|+.++..++..++... .-|.+.+||  +|..+.++. |...|+++.|-|...+-+    .
T Consensus        92 ~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGre-rfg~~F~~D--SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sd  168 (603)
T KOG0318|consen   92 EHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRE-RFGHVFLWD--SGNSVGEITGHSRRINSVDFKPSRPFRIATGSD  168 (603)
T ss_pred             ceeeeeeeeecccccccceeCCCCcEEEEEecCcc-ceeEEEEec--CCCccceeeccceeEeeeeccCCCceEEEeccC
Confidence            77777777777788899999998876665554311 125667776  787888888 899999999999876544    7


Q ss_pred             CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEE-cCCcceEEEe---cCccceEEEEeCC
Q 014977          151 EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEH-FGLNMIKLIN---AHDSHIACFTLTL  226 (415)
Q Consensus       151 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~-~~~~~~~~~~---~~~~~i~~l~~sp  226 (415)
                      |+.|.+|+=...+-...+..|.+  .+.++.++|++..++++| .||++.+++ .+++.+..+.   +|++.|.+++|+|
T Consensus       169 Dn~v~ffeGPPFKFk~s~r~Hsk--FV~~VRysPDG~~Fat~g-sDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsP  245 (603)
T KOG0318|consen  169 DNTVAFFEGPPFKFKSSFREHSK--FVNCVRYSPDGSRFATAG-SDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSP  245 (603)
T ss_pred             CCeEEEeeCCCeeeeeccccccc--ceeeEEECCCCCeEEEec-CCccEEEEcCCCccEEEEecCCCCccccEEEEEECC
Confidence            99999999777777777788887  455556666688888765 799999955 5677788887   8999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEEECCCCcEEEEEec-----------------------------------------CCCcccEE
Q 014977          227 DGLLLATASTRGTLIRIFNTVDGTRLQEVRR-----------------------------------------GVDRAEIY  265 (415)
Q Consensus       227 ~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~-----------------------------------------~~~~~~v~  265 (415)
                      |++.+++++.|.+ ++|||+.+.+++.++..                                         ..|...|+
T Consensus       246 Ds~~~~T~SaDkt-~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~IT  324 (603)
T KOG0318|consen  246 DSTQFLTVSADKT-IKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSIT  324 (603)
T ss_pred             CCceEEEecCCce-EEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheeccccccee
Confidence            9999999999999 99999987554433221                                         12677899


Q ss_pred             EEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977          266 SIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       266 ~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                      ++..+||+++|++|+.||.|.-|+..++...
T Consensus       325 aLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~  355 (603)
T KOG0318|consen  325 ALTVSPDGKTIYSGSYDGHINSWDSGSGTSD  355 (603)
T ss_pred             EEEEcCCCCEEEeeccCceEEEEecCCcccc
Confidence            9999999999999999999999999988754

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=7.9e-29  Score=200.83  Aligned_cols=245  Identities=14%  Similarity=0.230  Sum_probs=204.2

Q ss_pred             CccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCe
Q 014977           37 TAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK  115 (415)
Q Consensus        37 ~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~  115 (415)
                      +.....|+++|.++.|+-||++.++++ |.+|++|+...+..+  ++..+|+..+.+...+.+...+++++.|     ..
T Consensus        10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~li--ktYsghG~EVlD~~~s~Dnskf~s~GgD-----k~   82 (307)
T KOG0316|consen   10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALI--KTYSGHGHEVLDAALSSDNSKFASCGGD-----KA   82 (307)
T ss_pred             ceeecccccceEEEEEccCCCEEEEcCCCceEEeeccccccee--eeecCCCceeeeccccccccccccCCCC-----ce
Confidence            344678999999999999999998888 999999998765443  3455889999999999999999999988     99


Q ss_pred             EEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCC--ceeeeEEeccCCCcceEEEecCCCceEE
Q 014977          116 VIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVD--LKLLHQIETLANLRGLCCLSHHSSTSVL  189 (415)
Q Consensus       116 i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l  189 (415)
                      +.+||+.+|+.++.+. |.+.|+.++|+.+...++   .|..+++||.+.  .++++.+.....  .+..+.....  .|
T Consensus        83 v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D--~V~Si~v~~h--eI  158 (307)
T KOG0316|consen   83 VQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKD--GVSSIDVAEH--EI  158 (307)
T ss_pred             EEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcC--ceeEEEeccc--EE
Confidence            9999999999999998 999999999999999888   699999999964  577887876666  4444444332  33


Q ss_pred             EEeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEe
Q 014977          190 ACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIAL  269 (415)
Q Consensus       190 ~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~  269 (415)
                       .+|+.||+++.++.+...... .-...+|+++.|+++|+.+++++.|++ +++.|-.+|+.+..++++.....-...++
T Consensus       159 -vaGS~DGtvRtydiR~G~l~s-Dy~g~pit~vs~s~d~nc~La~~l~st-lrLlDk~tGklL~sYkGhkn~eykldc~l  235 (307)
T KOG0316|consen  159 -VAGSVDGTVRTYDIRKGTLSS-DYFGHPITSVSFSKDGNCSLASSLDST-LRLLDKETGKLLKSYKGHKNMEYKLDCCL  235 (307)
T ss_pred             -EeeccCCcEEEEEeecceeeh-hhcCCcceeEEecCCCCEEEEeeccce-eeecccchhHHHHHhcccccceeeeeeee
Confidence             359999999997776544332 223568999999999999999999999 99999999999999999544455567788


Q ss_pred             CCCCCEEEEEeCCCeEEEEEceeccc
Q 014977          270 SPNVQWLAVASDKGTVHIFSLRVRVV  295 (415)
Q Consensus       270 spdg~~l~s~s~dg~i~vwd~~~~~~  295 (415)
                      +....++++|++||.|++||+.....
T Consensus       236 ~qsdthV~sgSEDG~Vy~wdLvd~~~  261 (307)
T KOG0316|consen  236 NQSDTHVFSGSEDGKVYFWDLVDETQ  261 (307)
T ss_pred             cccceeEEeccCCceEEEEEecccee
Confidence            88889999999999999999988764

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=5.4e-29  Score=226.99  Aligned_cols=245  Identities=12%  Similarity=0.174  Sum_probs=211.7

Q ss_pred             CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEE
Q 014977           40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII  118 (415)
Q Consensus        40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~v  118 (415)
                      ...+.+.|.++.|+|...+++++- +|.|.||+.++...+.  .++-....+.+..|-.....+++|++|     ..|+|
T Consensus         9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk--sfeV~~~PvRa~kfiaRknWiv~GsDD-----~~IrV   81 (794)
T KOG0276|consen    9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK--SFEVSEVPVRAAKFIARKNWIVTGSDD-----MQIRV   81 (794)
T ss_pred             hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeee--eeeecccchhhheeeeccceEEEecCC-----ceEEE
Confidence            344889999999999999999988 9999999999755443  454667778888888889999999998     99999


Q ss_pred             EECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCc-eeeeEEeccCCCcceEEEecCCCceEEEEeC
Q 014977          119 WDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDL-KLLHQIETLANLRGLCCLSHHSSTSVLACPG  193 (415)
Q Consensus       119 wd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  193 (415)
                      |+..+++.+..+. |...|++++.+|...+++   .|-.|++||.+.. .+.+++.+|.+  .++.++++|+..--.+++
T Consensus        82 fnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~H--yVMqv~fnPkD~ntFaS~  159 (794)
T KOG0276|consen   82 FNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEH--YVMQVAFNPKDPNTFASA  159 (794)
T ss_pred             EecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcce--EEEEEEecCCCccceeee
Confidence            9999999999999 999999999999999888   6889999999764 67788999998  455555554433233358


Q ss_pred             CccCeEEEEEcCC-cceEEEecCccceEEEEeCCCC--CEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeC
Q 014977          194 LQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDG--LLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALS  270 (415)
Q Consensus       194 ~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g--~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~s  270 (415)
                      +.|++|++|.... .+..++++|...|+++.+-+-|  .+|++|+.|.. |+|||.++..+++++.+  |...|..+.|+
T Consensus       160 sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~t-iKvWDyQtk~CV~TLeG--Ht~Nvs~v~fh  236 (794)
T KOG0276|consen  160 SLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLT-IKVWDYQTKSCVQTLEG--HTNNVSFVFFH  236 (794)
T ss_pred             eccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCce-EEEeecchHHHHHHhhc--ccccceEEEec
Confidence            8999999998765 5678899999999999998755  59999999999 99999999999999999  77899999999


Q ss_pred             CCCCEEEEEeCCCeEEEEEceecccC
Q 014977          271 PNVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       271 pdg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                      |.=.++++|++||+++||+-.+-+..
T Consensus       237 p~lpiiisgsEDGTvriWhs~Ty~lE  262 (794)
T KOG0276|consen  237 PELPIIISGSEDGTVRIWNSKTYKLE  262 (794)
T ss_pred             CCCcEEEEecCCccEEEecCcceehh
Confidence            99999999999999999998887644

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3.6e-29  Score=217.82  Aligned_cols=290  Identities=12%  Similarity=0.091  Sum_probs=235.6

Q ss_pred             CCCccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCce-eEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCC
Q 014977           35 PQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE-TFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYP  112 (415)
Q Consensus        35 ~~~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~  112 (415)
                      ...+....|.+.|+-+.||++|++||+++ |.+..||.+..... .+..++.+|...|..+.|+||..++++++.+    
T Consensus       215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~----  290 (519)
T KOG0293|consen  215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFD----  290 (519)
T ss_pred             hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCch----
Confidence            34456789999999999999999999999 99999999865433 3445566899999999999999999999987    


Q ss_pred             CCeEEEEECCCCCEEEEEEc--cCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCce
Q 014977          113 PTKVIIWDDHQSRCIGEFAF--RSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS  187 (415)
Q Consensus       113 ~~~i~vwd~~~~~~~~~~~~--~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (415)
                       ..+.+||+.+|.....+.+  ...+.+.+|.||+..++   .|+++..||+. |+.+...++-.. ..+.+++..++|+
T Consensus       291 -e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~-~~v~dlait~Dgk  367 (519)
T KOG0293|consen  291 -EVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRD-PKVHDLAITYDGK  367 (519)
T ss_pred             -HheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhccccccc-ceeEEEEEcCCCc
Confidence             8899999999999988884  58899999999998887   69999999975 444444443322 2456666666777


Q ss_pred             EEEEeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEE
Q 014977          188 VLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSI  267 (415)
Q Consensus       188 ~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l  267 (415)
                      +++..+ .|..|++++.....-+.+..-..+|+++.+|.+|+++++.=.+.. |++||++..+.+..+.++....-+..-
T Consensus       368 ~vl~v~-~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qe-i~LWDl~e~~lv~kY~Ghkq~~fiIrS  445 (519)
T KOG0293|consen  368 YVLLVT-VDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQE-IHLWDLEENKLVRKYFGHKQGHFIIRS  445 (519)
T ss_pred             EEEEEe-cccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCe-eEEeecchhhHHHHhhcccccceEEEe
Confidence            777655 789999988776665545556789999999999999999888999 999999988888888885444455566


Q ss_pred             EeCC-CCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCccc
Q 014977          268 ALSP-NVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYF  346 (415)
Q Consensus       268 ~~sp-dg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (415)
                      +|-. +..++++|++|+.|+||+..+++...+++.|                                            
T Consensus       446 CFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGH--------------------------------------------  481 (519)
T KOG0293|consen  446 CFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGH--------------------------------------------  481 (519)
T ss_pred             ccCCCCcceEEecCCCceEEEEEccCCceeEeecCC--------------------------------------------
Confidence            6764 5589999999999999999999976655555                                            


Q ss_pred             ccccceEEEEeCCCceEEEEecCC--CEEEEEEeCCcEEEEEEec
Q 014977          347 SSEWSFAQFHIPEVTHFIAAFGSQ--NTVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~dg~~~~~~~~~  389 (415)
                                  ...+++++|.|.  ..++.++.||+|+||...+
T Consensus       482 ------------s~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  482 ------------SKTVNCVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             ------------cceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence                        146778999997  7899999999999998765

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.97  E-value=2.2e-28  Score=209.93  Aligned_cols=245  Identities=18%  Similarity=0.199  Sum_probs=206.3

Q ss_pred             CCccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCC
Q 014977           36 QTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPT  114 (415)
Q Consensus        36 ~~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~  114 (415)
                      .+....+|++.|+++.|+.||.+||+|. +|.|+||+..++.......  .....+.-+.|+|...+|+.|+.|     |
T Consensus        98 ~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~--~e~~dieWl~WHp~a~illAG~~D-----G  170 (399)
T KOG0296|consen   98 FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLD--QEVEDIEWLKWHPRAHILLAGSTD-----G  170 (399)
T ss_pred             ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEee--cccCceEEEEecccccEEEeecCC-----C
Confidence            4567899999999999999999999999 9999999999876655432  455667788999999999999998     9


Q ss_pred             eEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCC-Cc--------------
Q 014977          115 KVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLAN-LR--------------  175 (415)
Q Consensus       115 ~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~-~~--------------  175 (415)
                      .+.+|.+.++...+.+. |..++++=.|.|+|+.++   .|++|++|++.+++++..+..... +.              
T Consensus       171 svWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~  250 (399)
T KOG0296|consen  171 SVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTK  250 (399)
T ss_pred             cEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEe
Confidence            99999999977777777 899999999999999988   799999999999988877752110 00              


Q ss_pred             ----c------------eEEEe--------------------cCCCceEEEEeCCccCeEEEEEcCCcceEEEecCccce
Q 014977          176 ----G------------LCCLS--------------------HHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHI  219 (415)
Q Consensus       176 ----~------------~~~~~--------------------~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i  219 (415)
                          .            +.+..                    +.....-|++.|+.||+|.||+.....++.+-.|...|
T Consensus       251 g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V  330 (399)
T KOG0296|consen  251 GNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGV  330 (399)
T ss_pred             ccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCce
Confidence                0            00000                    11111124445889999999999999999999999999


Q ss_pred             EEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEce
Q 014977          220 ACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR  291 (415)
Q Consensus       220 ~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~  291 (415)
                      ..+.|-+ ..+|++++.+|. |+.||.++|+++.++.+  |...|.+++++|+++++++++.|++.+||++.
T Consensus       331 ~~l~w~~-t~~l~t~c~~g~-v~~wDaRtG~l~~~y~G--H~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  331 TKLKWLN-TDYLLTACANGK-VRQWDARTGQLKFTYTG--HQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             EEEEEcC-cchheeeccCce-EEeeeccccceEEEEec--CchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            9999998 778999999999 99999999999999999  88899999999999999999999999999875

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.97  E-value=8.6e-29  Score=231.88  Aligned_cols=244  Identities=14%  Similarity=0.181  Sum_probs=206.6

Q ss_pred             EeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCC-------------------------------EEE-
Q 014977           81 RDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR-------------------------------CIG-  128 (415)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~-------------------------------~~~-  128 (415)
                      .+++.....+.+..|+++...+|.|-.|     ..|++|.+...+                               ... 
T Consensus       372 YT~~nt~~~v~ca~fSddssmlA~Gf~d-----S~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~  446 (707)
T KOG0263|consen  372 YTFHNTYQGVTCAEFSDDSSMLACGFVD-----SSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRT  446 (707)
T ss_pred             EEEEEcCCcceeEeecCCcchhhccccc-----cEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEE
Confidence            3344666778888899999988888777     999999876311                               112 


Q ss_pred             EEEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcC
Q 014977          129 EFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG  205 (415)
Q Consensus       129 ~~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~  205 (415)
                      .+.|.++|....|+|+.++++   .|+++++|.+.+..++..+.+|..|++.+.|+  |.|.++|+ ++.|++.++|...
T Consensus       447 L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~--P~GyYFat-as~D~tArLWs~d  523 (707)
T KOG0263|consen  447 LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFA--PRGYYFAT-ASHDQTARLWSTD  523 (707)
T ss_pred             eecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEec--CCceEEEe-cCCCceeeeeecc
Confidence            223889999999999999999   68999999999999999999999988777766  56778876 6899999999865


Q ss_pred             C-cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCe
Q 014977          206 L-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGT  284 (415)
Q Consensus       206 ~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~  284 (415)
                      . .+.+.+.+|.+.|.|+.|+|+..|+++||.|.+ |++||+.+|..++.|.+  |.++|.+++|||+|++|++|+.||.
T Consensus       524 ~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~t-VRlWDv~~G~~VRiF~G--H~~~V~al~~Sp~Gr~LaSg~ed~~  600 (707)
T KOG0263|consen  524 HNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRT-VRLWDVSTGNSVRIFTG--HKGPVTALAFSPCGRYLASGDEDGL  600 (707)
T ss_pred             cCCchhhhcccccccceEEECCcccccccCCCCce-EEEEEcCCCcEEEEecC--CCCceEEEEEcCCCceEeecccCCc
Confidence            4 678889999999999999999999999999999 99999999999999998  9999999999999999999999999


Q ss_pred             EEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEE
Q 014977          285 VHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFI  364 (415)
Q Consensus       285 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (415)
                      |++||+.+++...+...                                                        ..+.++.
T Consensus       601 I~iWDl~~~~~v~~l~~--------------------------------------------------------Ht~ti~S  624 (707)
T KOG0263|consen  601 IKIWDLANGSLVKQLKG--------------------------------------------------------HTGTIYS  624 (707)
T ss_pred             EEEEEcCCCcchhhhhc--------------------------------------------------------ccCceeE
Confidence            99999999885432111                                                        1367788


Q ss_pred             EEecCC-CEEEEEEeCCcEEEEEEecCC
Q 014977          365 AAFGSQ-NTVVIVSMDGSFYRCSFDPVH  391 (415)
Q Consensus       365 ~~~~~~-~~i~~~~~dg~~~~~~~~~~~  391 (415)
                      +.|+.+ +.++++|.|..|.+|.+....
T Consensus       625 lsFS~dg~vLasgg~DnsV~lWD~~~~~  652 (707)
T KOG0263|consen  625 LSFSRDGNVLASGGADNSVRLWDLTKVI  652 (707)
T ss_pred             EEEecCCCEEEecCCCCeEEEEEchhhc
Confidence            999998 777778889999999887643

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.97  E-value=3.3e-30  Score=223.96  Aligned_cols=242  Identities=14%  Similarity=0.202  Sum_probs=210.1

Q ss_pred             cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEecc-CCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLK-SGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i  116 (415)
                      ....|+.+|.++.|+++|.++++|+ +|.|++|+..-.....   +. .+...|.+++|+|+...++++++|     |.|
T Consensus       133 ilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~---~~ahh~eaIRdlafSpnDskF~t~SdD-----g~i  204 (464)
T KOG0284|consen  133 ILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKI---IQAHHAEAIRDLAFSPNDSKFLTCSDD-----GTI  204 (464)
T ss_pred             HhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHH---hhHhhhhhhheeccCCCCceeEEecCC-----CeE
Confidence            4578999999999999999999999 9999999976422211   22 344889999999999999999998     999


Q ss_pred             EEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEe
Q 014977          117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP  192 (415)
Q Consensus       117 ~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  192 (415)
                      +|||....+....+. |...|.+++|+|..-+++   .|+.|++||.+++.++.++..|.+  .++++.+++++.+|++ 
T Consensus       205 kiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKn--tVl~~~f~~n~N~Llt-  281 (464)
T KOG0284|consen  205 KIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKN--TVLAVKFNPNGNWLLT-  281 (464)
T ss_pred             EEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccc--eEEEEEEcCCCCeeEE-
Confidence            999998888877777 899999999999887777   688999999999999999999888  7777777778888876 


Q ss_pred             CCccCeEEEEEcC-CcceEEEecCccceEEEEeCC-CCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeC
Q 014977          193 GLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTL-DGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALS  270 (415)
Q Consensus       193 g~~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp-~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~s  270 (415)
                      ++.|..+++++.+ .+.++.+++|+..++++.|+| ...+|.+|+.||. |..|.+...+++..+... |...|++++|+
T Consensus       282 ~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgs-vvh~~v~~~~p~~~i~~A-Hd~~iwsl~~h  359 (464)
T KOG0284|consen  282 GSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGS-VVHWVVGLEEPLGEIPPA-HDGEIWSLAYH  359 (464)
T ss_pred             ccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCc-eEEEeccccccccCCCcc-cccceeeeecc
Confidence            7899999997776 788899999999999999999 4568999999999 999999867777666543 88999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEEceec
Q 014977          271 PNVQWLAVASDKGTVHIFSLRVR  293 (415)
Q Consensus       271 pdg~~l~s~s~dg~i~vwd~~~~  293 (415)
                      |-|.+|++|+.|.++++|.-...
T Consensus       360 PlGhil~tgsnd~t~rfw~r~rp  382 (464)
T KOG0284|consen  360 PLGHILATGSNDRTVRFWTRNRP  382 (464)
T ss_pred             ccceeEeecCCCcceeeeccCCC
Confidence            99999999999999999986544

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.96  E-value=1.4e-29  Score=215.94  Aligned_cols=245  Identities=11%  Similarity=0.220  Sum_probs=201.8

Q ss_pred             ccccCCCCCccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCC
Q 014977           29 SASFGHPQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGD  107 (415)
Q Consensus        29 ~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  107 (415)
                      ...+.+...+........|+|+.+.  ...+++|. |++|+|||..+......  +.+|...+.++.|...  .+++|+.
T Consensus       182 ~Gr~~~~rinc~Se~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~--L~GHtGSVLCLqyd~r--viisGSS  255 (499)
T KOG0281|consen  182 CGRHLLQRINCRSENSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKI--LTGHTGSVLCLQYDER--VIVSGSS  255 (499)
T ss_pred             ccceeeeeecCCcccCCceEEEEec--chhhhcccccCceEEeccccHHHHHh--hhcCCCcEEeeeccce--EEEecCC
Confidence            3455566666677788899999985  45788999 99999999987655443  4489999999988765  8889998


Q ss_pred             CCCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE-eCCeEEEEEcCCce---eeeEEeccCCCcceEEEec
Q 014977          108 NSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLK---LLHQIETLANLRGLCCLSH  182 (415)
Q Consensus       108 d~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~  182 (415)
                      |     .+|+|||+++|+++.++- |...|..+.|+..-...+ .|..|.+||+....   +.+.+.+|...+.++  .+
T Consensus       256 D-----sTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvV--df  328 (499)
T KOG0281|consen  256 D-----STVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV--DF  328 (499)
T ss_pred             C-----ceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeee--cc
Confidence            8     999999999999999876 889999999987655555 79999999996543   334556777644444  44


Q ss_pred             CCCceEEEEeCCccCeEEEEEcC-CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCc
Q 014977          183 HSSTSVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDR  261 (415)
Q Consensus       183 ~~~~~~l~~~g~~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~  261 (415)
                      +.  +++++ ++.|.+|++|+.+ ...++++.+|+..|.|+.+  .|+++++|+.|.+ |++||+..|.+++.+++  |+
T Consensus       329 d~--kyIVs-ASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDnt-IRlwdi~~G~cLRvLeG--HE  400 (499)
T KOG0281|consen  329 DD--KYIVS-ASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNT-IRLWDIECGACLRVLEG--HE  400 (499)
T ss_pred             cc--ceEEE-ecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCce-EEEEeccccHHHHHHhc--hH
Confidence            43  36655 6789999999876 4778999999999999877  6899999999999 99999999999999999  88


Q ss_pred             ccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977          262 AEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       262 ~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                      .-|.++.|  |.+.|++|+.||+|+|||+.++...
T Consensus       401 eLvRciRF--d~krIVSGaYDGkikvWdl~aaldp  433 (499)
T KOG0281|consen  401 ELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDP  433 (499)
T ss_pred             Hhhhheee--cCceeeeccccceEEEEecccccCC
Confidence            89999999  4578999999999999999998754

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.96  E-value=3.6e-27  Score=194.58  Aligned_cols=293  Identities=12%  Similarity=0.115  Sum_probs=236.7

Q ss_pred             cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~  117 (415)
                      ...+|+.+++-+.|+.+|.+|.++. |....||-..+++.+-.  +.+|...|.++..+.+...+++++.|     .+++
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGt--y~GHtGavW~~Did~~s~~liTGSAD-----~t~k   77 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGT--YDGHTGAVWCCDIDWDSKHLITGSAD-----QTAK   77 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeee--ecCCCceEEEEEecCCcceeeecccc-----ceeE
Confidence            4678999999999999999999999 99999998877665544  44899999999999999999999998     9999


Q ss_pred             EEECCCCCEEEEEEccCceeEEEEcCCeEEEE--------eCCeEEEEEcC-------CceeeeEEeccCCCcceEEEec
Q 014977          118 IWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--------LEHKIYVYSFV-------DLKLLHQIETLANLRGLCCLSH  182 (415)
Q Consensus       118 vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--------~d~~i~iwd~~-------~~~~~~~~~~~~~~~~~~~~~~  182 (415)
                      +||+++|+.+..++...+|..+.|+.+|.+++        ..+.|.++|++       ..++...+..+..  .+...-|
T Consensus        78 LWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~s--kit~a~W  155 (327)
T KOG0643|consen   78 LWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDS--KITSALW  155 (327)
T ss_pred             EEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCcc--ceeeeee
Confidence            99999999999999999999999999998877        35679999997       3345666666665  4555566


Q ss_pred             CCCceEEEEeCCccCeEEEEEcCC--cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCC
Q 014977          183 HSSTSVLACPGLQRGQVRIEHFGL--NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVD  260 (415)
Q Consensus       183 ~~~~~~l~~~g~~dg~v~i~~~~~--~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~  260 (415)
                      .+-+.+|++ |..+|.|.+|+...  +.+...+.|...|+.|.+++|..++++++.|.+ -++||..+.+.++++..   
T Consensus       156 g~l~~~ii~-Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dtt-akl~D~~tl~v~Kty~t---  230 (327)
T KOG0643|consen  156 GPLGETIIA-GHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTT-AKLVDVRTLEVLKTYTT---  230 (327)
T ss_pred             cccCCEEEE-ecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCcc-ceeeeccceeeEEEeee---
Confidence            666778876 88999999988775  455666789999999999999999999999999 99999999999999984   


Q ss_pred             cccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCccccccc
Q 014977          261 RAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRG  340 (415)
Q Consensus       261 ~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (415)
                      ..+|++.+++|...+++.|+.....   |+.+-..+                                         .++
T Consensus       231 e~PvN~aaisP~~d~VilgGGqeA~---dVTTT~~r-----------------------------------------~GK  266 (327)
T KOG0643|consen  231 ERPVNTAAISPLLDHVILGGGQEAM---DVTTTSTR-----------------------------------------AGK  266 (327)
T ss_pred             cccccceecccccceEEecCCceee---eeeeeccc-----------------------------------------ccc
Confidence            5689999999988877776654322   33332211                                         112


Q ss_pred             ccCccccc--ccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977          341 VLPKYFSS--EWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       341 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~  389 (415)
                      +.+++|+-  +..+.+++-..++.+.++|+|+ .....+|.||.|++.-++.
T Consensus       267 FEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  267 FEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             hhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence            33344432  5556778888899999999999 5566677799999998876

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.96  E-value=4e-27  Score=202.22  Aligned_cols=279  Identities=13%  Similarity=0.078  Sum_probs=223.4

Q ss_pred             cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~  117 (415)
                      ....|++.|.+++.+|+.+++++|+ |..-.||+..++.....  +.+|...|+++.|+.++.+|++|+-+     |.|+
T Consensus        59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~e--ltgHKDSVt~~~FshdgtlLATGdms-----G~v~  131 (399)
T KOG0296|consen   59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGE--LTGHKDSVTCCSFSHDGTLLATGDMS-----GKVL  131 (399)
T ss_pred             ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeE--ecCCCCceEEEEEccCceEEEecCCC-----ccEE
Confidence            4578999999999999999999999 99999999999885555  44999999999999999999999998     9999


Q ss_pred             EEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeC
Q 014977          118 IWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG  193 (415)
Q Consensus       118 vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  193 (415)
                      ||+..++.....+. .-..|.-+.|+|.+.+++   .||.+.+|.+..+...+.+.+|..+...-.+.++  |+.+++ +
T Consensus       132 v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pd--GKr~~t-g  208 (399)
T KOG0296|consen  132 VFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPD--GKRILT-G  208 (399)
T ss_pred             EEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCC--CceEEE-E
Confidence            99999999888886 567788899999888877   7999999999998888899999886666666665  666665 7


Q ss_pred             CccCeEEEEEcCC-cceEEEe---------------------------------------------------cCccceEE
Q 014977          194 LQRGQVRIEHFGL-NMIKLIN---------------------------------------------------AHDSHIAC  221 (415)
Q Consensus       194 ~~dg~v~i~~~~~-~~~~~~~---------------------------------------------------~~~~~i~~  221 (415)
                      ..||+|++|+... +++..+.                                                   .+...+.+
T Consensus       209 y~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~es  288 (399)
T KOG0296|consen  209 YDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDES  288 (399)
T ss_pred             ecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhh
Confidence            8999999998653 2221111                                                   11122223


Q ss_pred             EEe---CCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCC
Q 014977          222 FTL---TLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGED  298 (415)
Q Consensus       222 l~~---sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~  298 (415)
                      +.+   +..-.+.|+|+.||+ |.|||+...++.+.+.   |...|..+.|-+ ..+|++++.+|.|+.||.++|+...+
T Consensus       289 ve~~~~ss~lpL~A~G~vdG~-i~iyD~a~~~~R~~c~---he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~  363 (399)
T KOG0296|consen  289 VESIPSSSKLPLAACGSVDGT-IAIYDLAASTLRHICE---HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFT  363 (399)
T ss_pred             hhhcccccccchhhcccccce-EEEEecccchhheecc---CCCceEEEEEcC-cchheeeccCceEEeeeccccceEEE
Confidence            333   334457889999999 9999998888777666   788899999998 78999999999999999999986543


Q ss_pred             CCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEE
Q 014977          299 SSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVS  377 (415)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~  377 (415)
                      ...|                                      +                  ..+...+++++ +.|++++
T Consensus       364 y~GH--------------------------------------~------------------~~Il~f~ls~~~~~vvT~s  387 (399)
T KOG0296|consen  364 YTGH--------------------------------------Q------------------MGILDFALSPQKRLVVTVS  387 (399)
T ss_pred             EecC--------------------------------------c------------------hheeEEEEcCCCcEEEEec
Confidence            3333                                      1                  23445678888 7777888


Q ss_pred             eCCcEEEEEEe
Q 014977          378 MDGSFYRCSFD  388 (415)
Q Consensus       378 ~dg~~~~~~~~  388 (415)
                      .|++.++|.++
T Consensus       388 ~D~~a~VF~v~  398 (399)
T KOG0296|consen  388 DDNTALVFEVP  398 (399)
T ss_pred             CCCeEEEEecC
Confidence            89999999764

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=2.3e-27  Score=226.69  Aligned_cols=246  Identities=16%  Similarity=0.252  Sum_probs=210.0

Q ss_pred             CCccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCC
Q 014977           36 QTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPT  114 (415)
Q Consensus        36 ~~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~  114 (415)
                      +.....+|...|..++|+|+++++++++ |++++|||+..... ..+.+.+|...+.+++|++++..+++++.|     +
T Consensus       195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~-~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D-----~  268 (456)
T KOG0266|consen  195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGR-NLKTLKGHSTYVTSVAFSPDGNLLVSGSDD-----G  268 (456)
T ss_pred             hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCe-EEEEecCCCCceEEEEecCCCCEEEEecCC-----C
Confidence            3444589999999999999999999999 99999999944333 334466999999999999999999999998     9


Q ss_pred             eEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCce--eeeEEeccCCCcceEEEecCCCceE
Q 014977          115 KVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLK--LLHQIETLANLRGLCCLSHHSSTSV  188 (415)
Q Consensus       115 ~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  188 (415)
                      +|++||+++++++..+. |...|.+++|++++.+++   .|+.|++||+.++.  ++..+..+.....+..+.+++++.+
T Consensus       269 tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~  348 (456)
T KOG0266|consen  269 TVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKY  348 (456)
T ss_pred             cEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcE
Confidence            99999999999999999 999999999999999998   69999999999988  5666766655423455666677778


Q ss_pred             EEEeCCccCeEEEEEcC-CcceEEEecCccc---eEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCC-ccc
Q 014977          189 LACPGLQRGQVRIEHFG-LNMIKLINAHDSH---IACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVD-RAE  263 (415)
Q Consensus       189 l~~~g~~dg~v~i~~~~-~~~~~~~~~~~~~---i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~-~~~  263 (415)
                      ++. +..|+.+++|+.. ......+.+|...   +.+...++.++++++|+.|+. |++||+.++..+..+.+  | ...
T Consensus       349 ll~-~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~-v~~~~~~s~~~~~~l~~--h~~~~  424 (456)
T KOG0266|consen  349 LLS-ASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGS-VYVWDSSSGGILQRLEG--HSKAA  424 (456)
T ss_pred             EEE-ecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCce-EEEEeCCccchhhhhcC--CCCCc
Confidence            876 6689999999987 6777888888764   344556789999999999999 99999999999989988  6 788


Q ss_pred             EEEEEeCCCCCEEEEEe--CCCeEEEEEce
Q 014977          264 IYSIALSPNVQWLAVAS--DKGTVHIFSLR  291 (415)
Q Consensus       264 v~~l~~spdg~~l~s~s--~dg~i~vwd~~  291 (415)
                      +..+.++|...++++++  .|+.+++|..+
T Consensus       425 ~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  425 VSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             eeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            99999999999999998  78899999754

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.96  E-value=9.9e-28  Score=214.30  Aligned_cols=284  Identities=14%  Similarity=0.177  Sum_probs=208.9

Q ss_pred             cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeE---EEeccCCCeeEEEEeeeCCe--EEEEecCCCCCCC
Q 014977           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETF---RRDLKSGGFRIVEMLFRCNI--LALVGAGDNSQYP  112 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~l~s~~~d~~~~  112 (415)
                      ...+|...|.++++.|.|.+|++|+ |-.|++||+.......   +...+.....+..+.|++.+  .+++++.      
T Consensus       162 ~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~------  235 (641)
T KOG0772|consen  162 QLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS------  235 (641)
T ss_pred             eccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecC------
Confidence            3467788999999999999999999 9999999997543222   21123445566777787755  3444443      


Q ss_pred             CCeEEEEECCCCCEEEEE--------------EccCceeEEEEcCCeEEEE----eCCeEEEEEcCCc-eeeeEEec---
Q 014977          113 PTKVIIWDDHQSRCIGEF--------------AFRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDL-KLLHQIET---  170 (415)
Q Consensus       113 ~~~i~vwd~~~~~~~~~~--------------~~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~-~~~~~~~~---  170 (415)
                       ...+|+| +.|..+.++              .|...+++.+|+|+.+-.+    .|+++++||+... +.++.+..   
T Consensus       236 -aqakl~D-RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~  313 (641)
T KOG0772|consen  236 -AQAKLLD-RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA  313 (641)
T ss_pred             -cceeEEc-cCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccC
Confidence             6788888 444433332              1667889999999765433    7999999999654 33444432   


Q ss_pred             cCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcc----eEEEecCcc--ceEEEEeCCCCCEEEEEeCCCcEEEEE
Q 014977          171 LANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNM----IKLINAHDS--HIACFTLTLDGLLLATASTRGTLIRIF  244 (415)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~----~~~~~~~~~--~i~~l~~sp~g~~l~s~s~dg~~I~vw  244 (415)
                      ....+.+...+|++++.+||+ |..||.|.+|+.....    ...-.+|..  .|++|.||++|++|++-+.|++ +++|
T Consensus       314 ~g~Rv~~tsC~~nrdg~~iAa-gc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~t-LKvW  391 (641)
T KOG0772|consen  314 GGKRVPVTSCAWNRDGKLIAA-GCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDT-LKVW  391 (641)
T ss_pred             CCcccCceeeecCCCcchhhh-cccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCc-eeee
Confidence            233455666778888888776 7899999999975532    333457876  8999999999999999999999 9999


Q ss_pred             ECCCC-cEEEEEecCCCcccEEEEEeCCCCCEEEEEeC------CCeEEEEEceecccCCCCCCCCCCCCcccccccCCC
Q 014977          245 NTVDG-TRLQEVRRGVDRAEIYSIALSPNVQWLAVASD------KGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSS  317 (415)
Q Consensus       245 d~~~~-~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (415)
                      |++.. +++....+-...-+-+.++|||+.++|++|+.      .|++.+||..+-+..                     
T Consensus       392 DLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v---------------------  450 (641)
T KOG0772|consen  392 DLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTV---------------------  450 (641)
T ss_pred             eccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeE---------------------
Confidence            99865 45655555333446688999999999999875      467888887765532                     


Q ss_pred             CCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977          318 SFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~  389 (415)
                                                         .++.++...+..|.|+|. |+|++++.||.+++| +++
T Consensus       451 -----------------------------------~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy-Ydp  487 (641)
T KOG0772|consen  451 -----------------------------------YKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY-YDP  487 (641)
T ss_pred             -----------------------------------EEecCCCceEEEEeecchhhheeeecCCCceEEE-ECc
Confidence                                               244455556777999999 999999999999999 555

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=2.6e-27  Score=219.98  Aligned_cols=281  Identities=13%  Similarity=0.148  Sum_probs=227.1

Q ss_pred             ccCCCCCCceEEEEEe-CCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCe
Q 014977           38 AFSDVDEIELISVSWN-QDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK  115 (415)
Q Consensus        38 ~~~~~h~~~V~~l~~s-p~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~  115 (415)
                      .+..|..+.|..+.|- |+.++||+++ .+.+++|++.+....   .+++|...+.++....++.++++++.|     ++
T Consensus       317 k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~---ii~GH~e~vlSL~~~~~g~llat~sKD-----~s  388 (775)
T KOG0319|consen  317 KQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ---IIPGHTEAVLSLDVWSSGDLLATGSKD-----KS  388 (775)
T ss_pred             hhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE---EEeCchhheeeeeecccCcEEEEecCC-----ce
Confidence            4456788889999985 7788999999 899999988875543   345899999999866777999999998     99


Q ss_pred             EEEEECCCCCE----EEEEE-ccCceeEEEEcCCeEEEE----eCCeEEEEEcCCcee-----e----eEEeccCCCcce
Q 014977          116 VIIWDDHQSRC----IGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKL-----L----HQIETLANLRGL  177 (415)
Q Consensus       116 i~vwd~~~~~~----~~~~~-~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~-----~----~~~~~~~~~~~~  177 (415)
                      +++|.++++..    +.... |...|.+++++..+.-++    .|.++++|++...+.     +    .....|...+..
T Consensus       389 vilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~  468 (775)
T KOG0319|consen  389 VILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINC  468 (775)
T ss_pred             EEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccc
Confidence            99998855432    33333 899999999987654333    799999999965211     1    122456776666


Q ss_pred             EEEecCCCceEEEEeCCccCeEEEEEcC-CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEe
Q 014977          178 CCLSHHSSTSVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVR  256 (415)
Q Consensus       178 ~~~~~~~~~~~l~~~g~~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~  256 (415)
                      ++++++  ..++| +|+.|.+.+||+.. .....++.+|...+.++.|+|..+.|+++|.|++ |+||.+.+..++++|.
T Consensus       469 Vaia~n--dkLiA-T~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~T-vKIW~is~fSClkT~e  544 (775)
T KOG0319|consen  469 VAIAPN--DKLIA-TGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKT-VKIWSISTFSCLKTFE  544 (775)
T ss_pred             eEecCC--CceEE-ecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCce-EEEEEeccceeeeeec
Confidence            666665  44555 59999999998876 3567789999999999999999999999999999 9999999999999999


Q ss_pred             cCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCccc
Q 014977          257 RGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLS  336 (415)
Q Consensus       257 ~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (415)
                      +  |...|..+.|-.+|+.|++++.||.|++|+++++++..++..|.+                                
T Consensus       545 G--H~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~D--------------------------------  590 (775)
T KOG0319|consen  545 G--HTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHND--------------------------------  590 (775)
T ss_pred             C--ccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccc--------------------------------
Confidence            9  899999999999999999999999999999999999876666633                                


Q ss_pred             ccccccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEe
Q 014977          337 FMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFD  388 (415)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~  388 (415)
                                              -+..++-++. +.+++++.||.|.+|.=.
T Consensus       591 ------------------------rvWaL~~~~~~~~~~tgg~Dg~i~~wkD~  619 (775)
T KOG0319|consen  591 ------------------------RVWALSVSPLLDMFVTGGGDGRIIFWKDV  619 (775)
T ss_pred             ------------------------eeEEEeecCccceeEecCCCeEEEEeecC
Confidence                                    2334555665 778889999999999644

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=4.8e-25  Score=186.63  Aligned_cols=246  Identities=12%  Similarity=0.170  Sum_probs=195.3

Q ss_pred             CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEE
Q 014977           40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII  118 (415)
Q Consensus        40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~v  118 (415)
                      ..+..+.|+++.|+++|.+|++++ |..++|||...+.+.....-+..+....++...++..+..+...|     .+|+.
T Consensus        10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d-----~tIry   84 (311)
T KOG1446|consen   10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKED-----DTIRY   84 (311)
T ss_pred             cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCC-----CceEE
Confidence            334678899999999999999988 889999999987766555444445556666655655555555445     89999


Q ss_pred             EECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCC
Q 014977          119 WDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL  194 (415)
Q Consensus       119 wd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  194 (415)
                      .++.+.+.++.+. |...|.+|+.+|-+..++   .|++|++||++..++...+.....  .  ..+++|+|.++|+ +.
T Consensus        85 Lsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--p--i~AfDp~GLifA~-~~  159 (311)
T KOG1446|consen   85 LSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--P--IAAFDPEGLIFAL-AN  159 (311)
T ss_pred             EEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--c--ceeECCCCcEEEE-ec
Confidence            9999999999999 999999999999776666   799999999998888777655443  2  3456777877776 54


Q ss_pred             ccCeEEEEEcCC---cceEEEe---cCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcc-cEEEE
Q 014977          195 QRGQVRIEHFGL---NMIKLIN---AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRA-EIYSI  267 (415)
Q Consensus       195 ~dg~v~i~~~~~---~~~~~~~---~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~-~v~~l  267 (415)
                      ..+.|++++.+.   .+...+.   +.....+.|.|+|||++|+.+...+. +++.|.-+|..+..+....... --...
T Consensus       160 ~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~-~~~lDAf~G~~~~tfs~~~~~~~~~~~a  238 (311)
T KOG1446|consen  160 GSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASF-IYLLDAFDGTVKSTFSGYPNAGNLPLSA  238 (311)
T ss_pred             CCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCc-EEEEEccCCcEeeeEeeccCCCCcceeE
Confidence            555899977653   4444444   34677899999999999999999999 9999999999998888743333 22577


Q ss_pred             EeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977          268 ALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       268 ~~spdg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                      +|+||++++++|+.||+|.+|+++++.+.
T Consensus       239 ~ftPds~Fvl~gs~dg~i~vw~~~tg~~v  267 (311)
T KOG1446|consen  239 TFTPDSKFVLSGSDDGTIHVWNLETGKKV  267 (311)
T ss_pred             EECCCCcEEEEecCCCcEEEEEcCCCcEe
Confidence            89999999999999999999999988764

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.96  E-value=1e-26  Score=194.94  Aligned_cols=238  Identities=13%  Similarity=0.129  Sum_probs=200.2

Q ss_pred             CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCe-EEEEecCCCCCCCCCeEE
Q 014977           40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNI-LALVGAGDNSQYPPTKVI  117 (415)
Q Consensus        40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~~~~~~i~  117 (415)
                      ..+|.++|..+.|.+|+..+++++ |.+|+.||.++++...+  ++.|..-+..+....-+ .++.++++|     ++++
T Consensus        86 lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk--~k~h~~~vNs~~p~rrg~~lv~SgsdD-----~t~k  158 (338)
T KOG0265|consen   86 LKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRK--HKGHTSFVNSLDPSRRGPQLVCSGSDD-----GTLK  158 (338)
T ss_pred             eccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeeh--hccccceeeecCccccCCeEEEecCCC-----ceEE
Confidence            469999999999999999999988 99999999999877655  33666666666654444 566667776     9999


Q ss_pred             EEECCCCCEEEEEEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCC
Q 014977          118 IWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL  194 (415)
Q Consensus       118 vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  194 (415)
                      +||+++..+++++..+.+++++.|..++..+.   -|+.|++||++....+..+.+|..++  ..++-+++|.++.. -+
T Consensus       159 l~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtI--t~lsls~~gs~lls-ns  235 (338)
T KOG0265|consen  159 LWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTI--TGLSLSRYGSFLLS-NS  235 (338)
T ss_pred             EEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCce--eeEEeccCCCcccc-cc
Confidence            99999999999999899999999998876666   69999999999999999999999855  45555556667765 67


Q ss_pred             ccCeEEEEEcCC-----cceEEEecCcc----ceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEE
Q 014977          195 QRGQVRIEHFGL-----NMIKLINAHDS----HIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIY  265 (415)
Q Consensus       195 ~dg~v~i~~~~~-----~~~~~~~~~~~----~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~  265 (415)
                      .|.++++|+.+.     +++..+.+|..    ....++|+|++..+.+|+.|.. +++||..+...+..+.+  |.+.|.
T Consensus       236 Md~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~-vyvwd~~~r~~lyklpG--h~gsvn  312 (338)
T KOG0265|consen  236 MDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRF-VYVWDTTSRRILYKLPG--HYGSVN  312 (338)
T ss_pred             ccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccce-EEEeecccccEEEEcCC--cceeEE
Confidence            999999998764     45777776643    3457899999999999999999 99999988899999998  899999


Q ss_pred             EEEeCCCCCEEEEEeCCCeEEEEEc
Q 014977          266 SIALSPNVQWLAVASDKGTVHIFSL  290 (415)
Q Consensus       266 ~l~~spdg~~l~s~s~dg~i~vwd~  290 (415)
                      +++|+|...+|.+++.|.+|++=++
T Consensus       313 ~~~Fhp~e~iils~~sdk~i~lgei  337 (338)
T KOG0265|consen  313 EVDFHPTEPIILSCSSDKTIYLGEI  337 (338)
T ss_pred             EeeecCCCcEEEEeccCceeEeecc
Confidence            9999999999999999999987443

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.95  E-value=8e-26  Score=203.42  Aligned_cols=239  Identities=19%  Similarity=0.286  Sum_probs=202.2

Q ss_pred             ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (415)
Q Consensus        38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i  116 (415)
                      .....|...+..+.|+|++++|++++ ++.+++|++...+....  +..+...+.++.|.+++.++++++.+     +.|
T Consensus        45 ~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~i  117 (289)
T cd00200          45 RTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRT--LTGHTSYVSSVAFSPDGRILSSSSRD-----KTI  117 (289)
T ss_pred             EEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEE--EeccCCcEEEEEEcCCCCEEEEecCC-----CeE
Confidence            34567888999999999999999999 99999999987544433  33566688999999998888888766     999


Q ss_pred             EEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE--e-CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEe
Q 014977          117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV--L-EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP  192 (415)
Q Consensus       117 ~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~--~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  192 (415)
                      .+||+.+++....+. |...+.++.|+|++.+++  . ++.|++||+.+++.+..+..+..  .+.++.+++++..+++ 
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~-  194 (289)
T cd00200         118 KVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTG--EVNSVAFSPDGEKLLS-  194 (289)
T ss_pred             EEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCcc--ccceEEECCCcCEEEE-
Confidence            999999888888887 888999999999887777  3 99999999998888888887665  4455566666666666 


Q ss_pred             CCccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCC
Q 014977          193 GLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSP  271 (415)
Q Consensus       193 g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp  271 (415)
                      ++.++.|++|+... +.+..+..|...+.++.|+|++.++++++.++. |++||+.+++.+..+..  |...|.+++|+|
T Consensus       195 ~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-i~i~~~~~~~~~~~~~~--~~~~i~~~~~~~  271 (289)
T cd00200         195 SSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT-IRVWDLRTGECVQTLSG--HTNSVTSLAWSP  271 (289)
T ss_pred             ecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCc-EEEEEcCCceeEEEccc--cCCcEEEEEECC
Confidence            44599999998874 556666688899999999999999998888999 99999999998888886  777899999999


Q ss_pred             CCCEEEEEeCCCeEEEEE
Q 014977          272 NVQWLAVASDKGTVHIFS  289 (415)
Q Consensus       272 dg~~l~s~s~dg~i~vwd  289 (415)
                      ++++|++++.||.|++|+
T Consensus       272 ~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         272 DGKRLASGSADGTIRIWD  289 (289)
T ss_pred             CCCEEEEecCCCeEEecC
Confidence            999999999999999996

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=6.5e-27  Score=221.06  Aligned_cols=241  Identities=15%  Similarity=0.186  Sum_probs=188.5

Q ss_pred             CCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCC----------------------------ce-eE------------
Q 014977           42 VDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPF----------------------------KE-TF------------   79 (415)
Q Consensus        42 ~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~----------------------------~~-~~------------   79 (415)
                      .|.+.|+++.|++||+|||+|+ |+.|+||.+...                            .. ..            
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            8999999999999999999999 999999987540                            00 00            


Q ss_pred             -----------------EEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEc
Q 014977           80 -----------------RRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLS  142 (415)
Q Consensus        80 -----------------~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~  142 (415)
                                       ...+.+|...|+++.|+.++.+|.+ +.|     .+|++|++...++++.|.|...|+|++|+
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSS-SMD-----KTVRLWh~~~~~CL~~F~HndfVTcVaFn  418 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSS-SMD-----KTVRLWHPGRKECLKVFSHNDFVTCVAFN  418 (712)
T ss_pred             CccccCCCccccccccchhhhhccchhheecccccCCeeEec-ccc-----ccEEeecCCCcceeeEEecCCeeEEEEec
Confidence                             0012477888999999998876655 444     99999999999999999999999999999


Q ss_pred             C-CeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEE---EecC
Q 014977          143 R-DRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKL---INAH  215 (415)
Q Consensus       143 ~-~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~---~~~~  215 (415)
                      | |.++++   .|++|+||++.+.+.+.-...+ .  .+.++++.|+|+..++ |+.+|.+++++..+..+..   +..|
T Consensus       419 PvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~--lITAvcy~PdGk~avI-Gt~~G~C~fY~t~~lk~~~~~~I~~~  494 (712)
T KOG0283|consen  419 PVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-D--LITAVCYSPDGKGAVI-GTFNGYCRFYDTEGLKLVSDFHIRLH  494 (712)
T ss_pred             ccCCCcEeecccccceEEeecCcCeeEeehhhh-h--hheeEEeccCCceEEE-EEeccEEEEEEccCCeEEEeeeEeec
Confidence            9 566666   7999999999887777655554 3  3444445555666554 8899999998766533221   1111


Q ss_pred             ------ccceEEEEeCCCC-CEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEE
Q 014977          216 ------DSHIACFTLTLDG-LLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIF  288 (415)
Q Consensus       216 ------~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vw  288 (415)
                            ...|+.+.|.|.. ..|++.+.|.. |+|||.++.+++..|++......-....|+.||++|+++++|..|+||
T Consensus       495 ~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSr-IRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW  573 (712)
T KOG0283|consen  495 NKKKKQGKRITGLQFFPGDPDEVLVTSNDSR-IRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIW  573 (712)
T ss_pred             cCccccCceeeeeEecCCCCCeEEEecCCCc-eEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEE
Confidence                  2379999999743 35777788999 999999999999999986455566778899999999999999999999


Q ss_pred             Eceec
Q 014977          289 SLRVR  293 (415)
Q Consensus       289 d~~~~  293 (415)
                      ++...
T Consensus       574 ~~~~~  578 (712)
T KOG0283|consen  574 KNDSF  578 (712)
T ss_pred             eCCCC
Confidence            98543

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=3.4e-26  Score=208.89  Aligned_cols=241  Identities=14%  Similarity=0.218  Sum_probs=210.2

Q ss_pred             CCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEE
Q 014977           41 DVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIW  119 (415)
Q Consensus        41 ~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vw  119 (415)
                      .-..-+|.+..|-+..+++++|+ |..|+||+.++.+++..  |+.|...+.++..+|...++.++++|     -.|++|
T Consensus        52 eV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~--FeAH~DyIR~iavHPt~P~vLtsSDD-----m~iKlW  124 (794)
T KOG0276|consen   52 EVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKT--FEAHSDYIRSIAVHPTLPYVLTSSDD-----MTIKLW  124 (794)
T ss_pred             eecccchhhheeeeccceEEEecCCceEEEEecccceeeEE--eeccccceeeeeecCCCCeEEecCCc-----cEEEEe
Confidence            34566799999999999999999 99999999999887665  55899999999999999999999998     999999


Q ss_pred             ECCCC-CEEEEEE-ccCceeEEEEcCCe-EEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeC
Q 014977          120 DDHQS-RCIGEFA-FRSDVRSVKLSRDR-IVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG  193 (415)
Q Consensus       120 d~~~~-~~~~~~~-~~~~i~~l~~~~~~-~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  193 (415)
                      |.+.+ .+.+++. |...|.+++|+|.. ..++   .|++|+||.+....+..++++|...+.++++-+-++..+|++ |
T Consensus       125 ~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIs-g  203 (794)
T KOG0276|consen  125 DWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLIS-G  203 (794)
T ss_pred             eccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEe-c
Confidence            98776 6777787 99999999999954 3444   799999999999999999999999999999998888889876 8


Q ss_pred             CccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCC
Q 014977          194 LQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPN  272 (415)
Q Consensus       194 ~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spd  272 (415)
                      ++|.+|+||+.+. .+++++.+|...|..+.|+|.-.++++|++||+ ++||+..+-+...++.-  .-..+++++-.+.
T Consensus       204 aDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGT-vriWhs~Ty~lE~tLn~--gleRvW~I~~~k~  280 (794)
T KOG0276|consen  204 ADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGT-VRIWNSKTYKLEKTLNY--GLERVWCIAAHKG  280 (794)
T ss_pred             CCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCcc-EEEecCcceehhhhhhc--CCceEEEEeecCC
Confidence            8999999999875 679999999999999999999999999999999 99999888877777765  4458999999998


Q ss_pred             CCEEEEEeCCCeEEEEEceec
Q 014977          273 VQWLAVASDKGTVHIFSLRVR  293 (415)
Q Consensus       273 g~~l~s~s~dg~i~vwd~~~~  293 (415)
                      ++.++.|.+.|.|. ..+-..
T Consensus       281 ~~~i~vG~Deg~i~-v~lgre  300 (794)
T KOG0276|consen  281 DGKIAVGFDEGSVT-VKLGRE  300 (794)
T ss_pred             CCeEEEeccCCcEE-EEccCC
Confidence            88899998888554 444333

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.95  E-value=6.6e-27  Score=217.34  Aligned_cols=245  Identities=12%  Similarity=0.162  Sum_probs=205.2

Q ss_pred             ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCce--eEEEeccCCCeeEEEEeeeCC-eEEEEecCCCCCCCC
Q 014977           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE--TFRRDLKSGGFRIVEMLFRCN-ILALVGAGDNSQYPP  113 (415)
Q Consensus        38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~~~~  113 (415)
                      ....+|++.|.++....+|-+|++|+ |+++++|.++....  .......+|...+.+++.+.. -.++++++.|     
T Consensus       359 ~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D-----  433 (775)
T KOG0319|consen  359 QIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQD-----  433 (775)
T ss_pred             EEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCC-----
Confidence            46789999999999777889999999 99999999854322  111223477777888777654 3688899988     


Q ss_pred             CeEEEEECCCCCE-----EEE-----EEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEE
Q 014977          114 TKVIIWDDHQSRC-----IGE-----FAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCL  180 (415)
Q Consensus       114 ~~i~vwd~~~~~~-----~~~-----~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  180 (415)
                      .++++|++...+.     +.+     ..|...|++++++|+..+++   .|.+.+||++++...+.++.+|...+..+.|
T Consensus       434 ~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~F  513 (775)
T KOG0319|consen  434 CTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSF  513 (775)
T ss_pred             ceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEe
Confidence            9999999866221     111     11899999999999999999   7999999999999999999999985555555


Q ss_pred             ecCCCceEEEEeCCccCeEEEEEcC-CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCC
Q 014977          181 SHHSSTSVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGV  259 (415)
Q Consensus       181 ~~~~~~~~l~~~g~~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~  259 (415)
                      ++  ..+.+++ ++.|++|+||... ..+++++.+|...|..+.|-.+|+.|++++.||- |++|++++++++.++..  
T Consensus       514 s~--~dq~laT-~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGl-iKlWnikt~eC~~tlD~--  587 (775)
T KOG0319|consen  514 SK--NDQLLAT-CSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGL-IKLWNIKTNECEMTLDA--  587 (775)
T ss_pred             cc--ccceeEe-ccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCc-EEEEeccchhhhhhhhh--
Confidence            55  4446665 7889999999876 5789999999999999999999999999999999 99999999999999999  


Q ss_pred             CcccEEEEEeCCCCCEEEEEeCCCeEEEEEceec
Q 014977          260 DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR  293 (415)
Q Consensus       260 ~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~  293 (415)
                      |...|++++-++.+.++++|+.||.|.+|.=.+.
T Consensus       588 H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te  621 (775)
T KOG0319|consen  588 HNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTE  621 (775)
T ss_pred             ccceeEEEeecCccceeEecCCCeEEEEeecCcH
Confidence            8899999999999999999999999999975443

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=5e-26  Score=188.25  Aligned_cols=237  Identities=19%  Similarity=0.294  Sum_probs=194.4

Q ss_pred             CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEE
Q 014977           40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII  118 (415)
Q Consensus        40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~v  118 (415)
                      ..+|+..|++++|+|.|++||+++ |.++.||.-...+......+.+|...+.+++|+.++.+|++++.|     +.|.|
T Consensus        57 d~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRD-----KSVWi  131 (312)
T KOG0645|consen   57 DDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRD-----KSVWI  131 (312)
T ss_pred             cccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCC-----CeEEE
Confidence            458999999999999999999999 999999998765555566677999999999999999999999998     99999


Q ss_pred             EECCCC---CEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcC---CceeeeEEeccCCCcceEEEecCCCceE
Q 014977          119 WDDHQS---RCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFV---DLKLLHQIETLANLRGLCCLSHHSSTSV  188 (415)
Q Consensus       119 wd~~~~---~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (415)
                      |.+..+   .++..++ |...|..+.|+|...+++   .|++|++|+-.   +-.+++++.+|.+  ++.++.+++.|..
T Consensus       132 We~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~--TVW~~~F~~~G~r  209 (312)
T KOG0645|consen  132 WEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHEN--TVWSLAFDNIGSR  209 (312)
T ss_pred             EEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccc--eEEEEEecCCCce
Confidence            998754   4566666 999999999999877777   79999999875   3367888998887  6777777777777


Q ss_pred             EEEeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC------cEEEEEecCCCcc
Q 014977          189 LACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG------TRLQEVRRGVDRA  262 (415)
Q Consensus       189 l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~------~~~~~~~~~~~~~  262 (415)
                      |++ ++.|++|+||.....   .-..|...++.+.|. +| .|++++.|+. |++|.-..+      +.+... .+.|..
T Consensus       210 l~s-~sdD~tv~Iw~~~~~---~~~~~sr~~Y~v~W~-~~-~IaS~ggD~~-i~lf~~s~~~d~p~~~l~~~~-~~aHe~  281 (312)
T KOG0645|consen  210 LVS-CSDDGTVSIWRLYTD---LSGMHSRALYDVPWD-NG-VIASGGGDDA-IRLFKESDSPDEPSWNLLAKK-EGAHEV  281 (312)
T ss_pred             EEE-ecCCcceEeeeeccC---cchhcccceEeeeec-cc-ceEeccCCCE-EEEEEecCCCCCchHHHHHhh-hccccc
Confidence            776 789999999875421   113477899999998 44 7999999999 999976542      112111 233777


Q ss_pred             cEEEEEeCCC-CCEEEEEeCCCeEEEEEce
Q 014977          263 EIYSIALSPN-VQWLAVASDKGTVHIFSLR  291 (415)
Q Consensus       263 ~v~~l~~spd-g~~l~s~s~dg~i~vwd~~  291 (415)
                      .|++++|+|. ..+|+++++||.|++|.+.
T Consensus       282 dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  282 DVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             ccceEEEcCCCCCceeecCCCceEEEEEec
Confidence            9999999994 6789999999999999975

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.2e-25  Score=212.56  Aligned_cols=244  Identities=16%  Similarity=0.287  Sum_probs=205.0

Q ss_pred             CccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCe
Q 014977           37 TAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK  115 (415)
Q Consensus        37 ~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~  115 (415)
                      .....+|.++|..+.|+|++.+|++|+ |-.|+||+....+.++.  +.+|-..|..+.|++..-+++++++|     .+
T Consensus        44 i~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclft--L~GHlDYVRt~~FHheyPWIlSASDD-----QT  116 (1202)
T KOG0292|consen   44 IDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFT--LLGHLDYVRTVFFHHEYPWILSASDD-----QT  116 (1202)
T ss_pred             HhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhh--hccccceeEEeeccCCCceEEEccCC-----Ce
Confidence            455789999999999999999999999 89999999998766655  44899999999999999999999998     99


Q ss_pred             EEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCce----------------------------
Q 014977          116 VIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLK----------------------------  163 (415)
Q Consensus       116 i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~----------------------------  163 (415)
                      |+||++.+++++..+. |...|.|..|+|...+++   .|.+|+|||+...+                            
T Consensus       117 IrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~Da  196 (1202)
T KOG0292|consen  117 IRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDA  196 (1202)
T ss_pred             EEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCe
Confidence            9999999999999999 999999999999777776   79999999983211                            


Q ss_pred             -eeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcce---EEEecCccceEEEEeCCCCCEEEEEeCCCc
Q 014977          164 -LLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMI---KLINAHDSHIACFTLTLDGLLLATASTRGT  239 (415)
Q Consensus       164 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~---~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~  239 (415)
                       ..+.+.+|...+.-.  +++|...+++ +|++|..|++|.++....   -+..+|-..|.++-|+|...++++.++|+.
T Consensus       197 VVK~VLEGHDRGVNwa--AfhpTlpliV-SG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDks  273 (1202)
T KOG0292|consen  197 VVKHVLEGHDRGVNWA--AFHPTLPLIV-SGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKS  273 (1202)
T ss_pred             eeeeeecccccccceE--EecCCcceEE-ecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCcc
Confidence             123446676644444  4455555665 588999999999887654   456799999999999999999999999999


Q ss_pred             EEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977          240 LIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (415)
Q Consensus       240 ~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  294 (415)
                       |+|||+...+.+++++.  .....+.++-+|..+++++|- |+-+.||.++...
T Consensus       274 -irVwDm~kRt~v~tfrr--endRFW~laahP~lNLfAAgH-DsGm~VFkleREr  324 (1202)
T KOG0292|consen  274 -IRVWDMTKRTSVQTFRR--ENDRFWILAAHPELNLFAAGH-DSGMIVFKLERER  324 (1202)
T ss_pred             -EEEEecccccceeeeec--cCCeEEEEEecCCcceeeeec-CCceEEEEEcccC
Confidence             99999999999999987  566899999999999887665 5558899987544

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.95  E-value=4.2e-26  Score=195.42  Aligned_cols=202  Identities=14%  Similarity=0.202  Sum_probs=180.6

Q ss_pred             ccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEE
Q 014977           83 LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYS  158 (415)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd  158 (415)
                      +.+|...+.++++.|...++++++.|     ++|+|||+.+|+...++. |...|..+++++-..+++   .|+.|+.||
T Consensus       147 i~gHlgWVr~vavdP~n~wf~tgs~D-----rtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD  221 (460)
T KOG0285|consen  147 ISGHLGWVRSVAVDPGNEWFATGSAD-----RTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD  221 (460)
T ss_pred             hhhccceEEEEeeCCCceeEEecCCC-----ceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence            46888999999999999999999998     999999999999999998 999999999999988887   799999999


Q ss_pred             cCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCCEEEEEeCC
Q 014977          159 FVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTR  237 (415)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d  237 (415)
                      ++..+.++.+.+|...+  .++...|.-..|++ |+.|.++++|+.+. ..+..+.+|..+|.++.+.|-.-.+++|+.|
T Consensus       222 Le~nkvIR~YhGHlS~V--~~L~lhPTldvl~t-~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D  298 (460)
T KOG0285|consen  222 LEYNKVIRHYHGHLSGV--YCLDLHPTLDVLVT-GGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHD  298 (460)
T ss_pred             chhhhhHHHhcccccee--EEEeccccceeEEe-cCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCC
Confidence            99999999999998844  45555544446655 77999999999876 4688899999999999999977789999999


Q ss_pred             CcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977          238 GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       238 g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                      ++ |++||+..|+...++..  |...|.+++.+|....+|+++.|. |+-|++..+.-.
T Consensus       299 ~t-vrlWDl~agkt~~tlt~--hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~  353 (460)
T KOG0285|consen  299 ST-VRLWDLRAGKTMITLTH--HKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFL  353 (460)
T ss_pred             ce-EEEeeeccCceeEeeec--ccceeeEEecCCchhhhhccCCcc-ceeccCCccchh
Confidence            99 99999999999988887  888999999999999999999888 999999998754

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.95  E-value=7.4e-26  Score=210.65  Aligned_cols=283  Identities=15%  Similarity=0.119  Sum_probs=233.6

Q ss_pred             ccCCCCCCceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977           38 AFSDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (415)
Q Consensus        38 ~~~~~h~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~  117 (415)
                      -...+|...|.+++++.+...+++|..+.++||+.++.+.+....    ...+.+..|-|...+++.|...     |.+.
T Consensus       367 i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~----~~y~l~~~Fvpgd~~Iv~G~k~-----Gel~  437 (888)
T KOG0306|consen  367 IEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTIT----CGYILASKFVPGDRYIVLGTKN-----GELQ  437 (888)
T ss_pred             eeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEec----cccEEEEEecCCCceEEEeccC-----CceE
Confidence            346899999999999999999999999999999999877665532    2378889999999999999887     9999


Q ss_pred             EEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCC-----ceeeeEEecc-----CCCcceEEEecC
Q 014977          118 IWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVD-----LKLLHQIETL-----ANLRGLCCLSHH  183 (415)
Q Consensus       118 vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~-----~~~~~~~~~~-----~~~~~~~~~~~~  183 (415)
                      ++|+.....+.+++ |.+.|.+++.+||+..++   .|.+|++||+.-     +...+.+..+     .-...+.+++.+
T Consensus       438 vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~S  517 (888)
T KOG0306|consen  438 VFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVS  517 (888)
T ss_pred             EEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEc
Confidence            99999998888887 999999999999988877   799999999731     1111111111     112267888999


Q ss_pred             CCceEEEEeCCccCeEEE-EEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcc
Q 014977          184 SSTSVLACPGLQRGQVRI-EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRA  262 (415)
Q Consensus       184 ~~~~~l~~~g~~dg~v~i-~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~  262 (415)
                      |++++|++ +--|.+|++ +..+.+-...+.+|.-||.++.++||++++++|+.|.+ |+||-+.-|.+-+.+-+  |..
T Consensus       518 pdgk~LaV-sLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKn-VKiWGLdFGDCHKS~fA--HdD  593 (888)
T KOG0306|consen  518 PDGKLLAV-SLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKN-VKIWGLDFGDCHKSFFA--HDD  593 (888)
T ss_pred             CCCcEEEE-EeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCc-eEEeccccchhhhhhhc--ccC
Confidence            99999987 778999999 55556777789999999999999999999999999999 99999999999999988  888


Q ss_pred             cEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCccccccccc
Q 014977          263 EIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVL  342 (415)
Q Consensus       263 ~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (415)
                      .|.++.|-|+...+.+++.|+.|+-||-++-+...++..|                                        
T Consensus       594 Svm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H----------------------------------------  633 (888)
T KOG0306|consen  594 SVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGH----------------------------------------  633 (888)
T ss_pred             ceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccc----------------------------------------
Confidence            9999999999999999999999999998777655433333                                        


Q ss_pred             CcccccccceEEEEeCCCceEEEEecCCC-EEEEEEeCCcEEEEEEec
Q 014977          343 PKYFSSEWSFAQFHIPEVTHFIAAFGSQN-TVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~dg~~~~~~~~~  389 (415)
                                      -..+.+++.+|++ .+++++.|-+|++|....
T Consensus       634 ----------------~~ev~cLav~~~G~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  634 ----------------HSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             ----------------hheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence                            1244567788884 566666689999998865

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=6.7e-26  Score=183.89  Aligned_cols=238  Identities=14%  Similarity=0.189  Sum_probs=196.8

Q ss_pred             ccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEE
Q 014977           83 LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYS  158 (415)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd  158 (415)
                      +..+...+..+.|+.+|.+.++++.|     .+|++|+...|.+++++. |...|.+++.+.|+..++   .|..+.+||
T Consensus        13 l~~~qgaV~avryN~dGnY~ltcGsd-----rtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD   87 (307)
T KOG0316|consen   13 LDCAQGAVRAVRYNVDGNYCLTCGSD-----RTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD   87 (307)
T ss_pred             ecccccceEEEEEccCCCEEEEcCCC-----ceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence            34677889999999999999999998     999999999999999999 999999999999988888   689999999


Q ss_pred             cCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC---cceEEEecCccceEEEEeCCCCCEEEEEe
Q 014977          159 FVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL---NMIKLINAHDSHIACFTLTLDGLLLATAS  235 (415)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~---~~~~~~~~~~~~i~~l~~sp~g~~l~s~s  235 (415)
                      +.+|+.++.+.+|..  .+.++.++.+...++ +|+.|.++++|+-+.   ++++.+......|.++..+  +..+++|+
T Consensus        88 V~TGkv~Rr~rgH~a--qVNtV~fNeesSVv~-SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS  162 (307)
T KOG0316|consen   88 VNTGKVDRRFRGHLA--QVNTVRFNEESSVVA-SGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGS  162 (307)
T ss_pred             cccCeeeeecccccc--eeeEEEecCcceEEE-eccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeec
Confidence            999999999999988  455556666655655 589999999998665   5677777778889998875  45799999


Q ss_pred             CCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccC
Q 014977          236 TRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNH  315 (415)
Q Consensus       236 ~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (415)
                      .||+ ++.||++.|......-+    .+|+++.|++|++.+++++.|+++++.|-++|+-......|             
T Consensus       163 ~DGt-vRtydiR~G~l~sDy~g----~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGh-------------  224 (307)
T KOG0316|consen  163 VDGT-VRTYDIRKGTLSSDYFG----HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGH-------------  224 (307)
T ss_pred             cCCc-EEEEEeecceeehhhcC----CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhccc-------------
Confidence            9999 99999999987655544    38999999999999999999999999999999844322221             


Q ss_pred             CCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977          316 SSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~  389 (415)
                                                       ..  ..+      +..|.+... ..++.++.||.+|+|.+..
T Consensus       225 ---------------------------------kn--~ey------kldc~l~qsdthV~sgSEDG~Vy~wdLvd  258 (307)
T KOG0316|consen  225 ---------------------------------KN--MEY------KLDCCLNQSDTHVFSGSEDGKVYFWDLVD  258 (307)
T ss_pred             ---------------------------------cc--cee------eeeeeecccceeEEeccCCceEEEEEecc
Confidence                                             10  123      334677665 6777777799999999976

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.95  E-value=2.1e-25  Score=192.61  Aligned_cols=286  Identities=14%  Similarity=0.123  Sum_probs=216.3

Q ss_pred             ccCCCCCccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC---CeEEEEecC
Q 014977           31 SFGHPQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC---NILALVGAG  106 (415)
Q Consensus        31 ~~~~~~~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~s~~  106 (415)
                      .+..|.......|.+.|.++...  ++++++|+ ||.++||+... +....  +.+|...+.++.+..   ....+++++
T Consensus        92 ~~~aP~pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~G-k~~~~--~~Ght~~ik~v~~v~~n~~~~~fvsas  166 (423)
T KOG0313|consen   92 AITAPKPLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKG-KSIKT--IVGHTGPIKSVAWVIKNSSSCLFVSAS  166 (423)
T ss_pred             ecCCCCccccccchhhhhhhccc--CceEEEeecCCeeEEEecCC-ceEEE--EecCCcceeeeEEEecCCccceEEEec
Confidence            34455555678899999999988  77999999 99999999875 32232  337777777666543   334688888


Q ss_pred             CCCCCCCCeEEEEECCCCCEEEEE-----EccCceeEEEEcCCeEEEE---eCCeEEEEEcC------------------
Q 014977          107 DNSQYPPTKVIIWDDHQSRCIGEF-----AFRSDVRSVKLSRDRIVVV---LEHKIYVYSFV------------------  160 (415)
Q Consensus       107 ~d~~~~~~~i~vwd~~~~~~~~~~-----~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~------------------  160 (415)
                      .|     .++++|.++.+......     .|...|.++...+++..++   .|..|.||+..                  
T Consensus       167 ~D-----qtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~  241 (423)
T KOG0313|consen  167 MD-----QTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQ  241 (423)
T ss_pred             CC-----ceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhh
Confidence            88     99999998877543322     3899999999999999988   79999999931                  


Q ss_pred             -------CceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEE
Q 014977          161 -------DLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLAT  233 (415)
Q Consensus       161 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s  233 (415)
                             ++.++..+.+|..++..+.|..  .  -.+++++.|.+|+.|+........-......+.++..+|..++|++
T Consensus       242 ~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~--~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~  317 (423)
T KOG0313|consen  242 KREKEGGTRTPLVTLEGHTEPVSSVVWSD--A--TVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLAS  317 (423)
T ss_pred             hhhhcccccCceEEecccccceeeEEEcC--C--CceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeee
Confidence                   1224556677887555554444  2  2455688999999999876555544455778899999999999999


Q ss_pred             EeCCCcEEEEEECCCCc---EEEEEecCCCcccEEEEEeCCCC-CEEEEEeCCCeEEEEEceeccc-CCCCCCCCCCCCc
Q 014977          234 ASTRGTLIRIFNTVDGT---RLQEVRRGVDRAEIYSIALSPNV-QWLAVASDKGTVHIFSLRVRVV-GEDSSSSLSTPSQ  308 (415)
Q Consensus       234 ~s~dg~~I~vwd~~~~~---~~~~~~~~~~~~~v~~l~~spdg-~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~~  308 (415)
                      |+.|.. |++||.+++.   ..+.|.+  |.+.|.++.|+|.. .+|++++.|+++++||+++.+. .-++..|      
T Consensus       318 gssdr~-irl~DPR~~~gs~v~~s~~g--H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h------  388 (423)
T KOG0313|consen  318 GSSDRH-IRLWDPRTGDGSVVSQSLIG--HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGH------  388 (423)
T ss_pred             cCCCCc-eeecCCCCCCCceeEEeeec--chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccC------
Confidence            999999 9999998763   4556777  88899999999955 5688999999999999998872 2221111      


Q ss_pred             ccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCCCEEEEEEeCCcEEEEEEe
Q 014977          309 STELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFD  388 (415)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dg~~~~~~~~  388 (415)
                                                                        .+-+..+.|.....|++||.|.+++|++-.
T Consensus       389 --------------------------------------------------~DKvl~vdW~~~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  389 --------------------------------------------------NDKVLSVDWNEGGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             --------------------------------------------------CceEEEEeccCCceEEeccCcceEEEeccc
Confidence                                                              223345667776899999999999999765


Q ss_pred             c
Q 014977          389 P  389 (415)
Q Consensus       389 ~  389 (415)
                      +
T Consensus       419 ~  419 (423)
T KOG0313|consen  419 P  419 (423)
T ss_pred             c
Confidence            4

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.95  E-value=2.2e-27  Score=210.64  Aligned_cols=240  Identities=13%  Similarity=0.166  Sum_probs=196.3

Q ss_pred             CccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCe-EEEEecCCCCCCCCC
Q 014977           37 TAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNI-LALVGAGDNSQYPPT  114 (415)
Q Consensus        37 ~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~~~~~  114 (415)
                      .....+|..+|..++|+++|..|.+++ |+.+++||+++++......+   .....++.|.|+. ..++.|+.|     +
T Consensus       251 lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~---~~~~~cvkf~pd~~n~fl~G~sd-----~  322 (503)
T KOG0282|consen  251 LRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL---DKVPTCVKFHPDNQNIFLVGGSD-----K  322 (503)
T ss_pred             ehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEec---CCCceeeecCCCCCcEEEEecCC-----C
Confidence            455689999999999999999999999 99999999999887776543   4456677888876 666666666     9


Q ss_pred             eEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEE
Q 014977          115 KVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLA  190 (415)
Q Consensus       115 ~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  190 (415)
                      .|+.||+++++.++++. |-+.|..+.|-+++..++   .|+.++||+.+..-.++.+.. ......-++...|++.+++
T Consensus       323 ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~-~~~hsmP~~~~~P~~~~~~  401 (503)
T KOG0282|consen  323 KIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIAD-PEMHTMPCLTLHPNGKWFA  401 (503)
T ss_pred             cEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcc-hhhccCcceecCCCCCeeh
Confidence            99999999999999988 889999999999998888   689999999987665544321 1122445566666777887


Q ss_pred             EeCCccCeEEEEEcC----CcceEEEecCc--cceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccE
Q 014977          191 CPGLQRGQVRIEHFG----LNMIKLINAHD--SHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEI  264 (415)
Q Consensus       191 ~~g~~dg~v~i~~~~----~~~~~~~~~~~--~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v  264 (415)
                      + -+.|+.|.++...    ....+.+++|.  +.-..+.|||||.+|++|+.||. +.+||.++.+.+..++.  |..++
T Consensus       402 a-Qs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~-v~~wdwkt~kl~~~lka--h~~~c  477 (503)
T KOG0282|consen  402 A-QSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGK-VNFWDWKTTKLVSKLKA--HDQPC  477 (503)
T ss_pred             h-hccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCcc-EEEeechhhhhhhcccc--CCcce
Confidence            6 6688888885533    34456677885  44567899999999999999999 99999999999999998  78899


Q ss_pred             EEEEeCCCC-CEEEEEeCCCeEEEEE
Q 014977          265 YSIALSPNV-QWLAVASDKGTVHIFS  289 (415)
Q Consensus       265 ~~l~~spdg-~~l~s~s~dg~i~vwd  289 (415)
                      ..+.|+|.. ..+|+++.||.|++|+
T Consensus       478 i~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  478 IGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             EEEEecCCCcceeEecccCceeEecC
Confidence            999999954 5789999999999996

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.95  E-value=1.1e-25  Score=207.78  Aligned_cols=277  Identities=14%  Similarity=0.204  Sum_probs=225.0

Q ss_pred             ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEE-EeeeC-CeEEEEecCCCCCCCCC
Q 014977           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVE-MLFRC-NILALVGAGDNSQYPPT  114 (415)
Q Consensus        38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~l~s~~~d~~~~~~  114 (415)
                      ....+|+..|..+++.+.. .+++++ |+++++|+-...+..-...+.++...+.. ++|.+ +.-.++.++.|     .
T Consensus         8 ~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D-----~   81 (745)
T KOG0301|consen    8 HELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMD-----T   81 (745)
T ss_pred             EEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeeccc-----c
Confidence            4578999999999987655 677777 99999999865444433444445554444 66664 44456777777     9


Q ss_pred             eEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEE
Q 014977          115 KVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC  191 (415)
Q Consensus       115 ~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  191 (415)
                      .|.+|.+....++..+. |+..|.++....++.++.  .|.++++|-.  +++...+.+|...++  ++..-|++.++  
T Consensus        82 ~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~--~~l~~~l~gH~asVW--Av~~l~e~~~v--  155 (745)
T KOG0301|consen   82 TIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRI--GELVYSLQGHTASVW--AVASLPENTYV--  155 (745)
T ss_pred             eEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecc--hhhhcccCCcchhee--eeeecCCCcEE--
Confidence            99999999999999988 999999999999888555  7999999985  466666888888555  55555555443  


Q ss_pred             eCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCC
Q 014977          192 PGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSP  271 (415)
Q Consensus       192 ~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp  271 (415)
                      +|+.|.+|++|.- ++.++++.+|...|+.+++-+++. +++++.||. |++|++ +|+.+.++.+  |.+-|.+++..+
T Consensus       156 TgsaDKtIklWk~-~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~-Ir~w~~-~ge~l~~~~g--htn~vYsis~~~  229 (745)
T KOG0301|consen  156 TGSADKTIKLWKG-GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGS-IRLWDL-DGEVLLEMHG--HTNFVYSISMAL  229 (745)
T ss_pred             eccCcceeeeccC-CchhhhhccchhheeeeEEecCCC-eEeecCCce-EEEEec-cCceeeeeec--cceEEEEEEecC
Confidence            5889999999976 788999999999999999998864 789999999 999998 8999989888  889999999888


Q ss_pred             CCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccc
Q 014977          272 NVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWS  351 (415)
Q Consensus       272 dg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (415)
                      ++..++++++|++++||+..  ++.                                                       
T Consensus       230 ~~~~Ivs~gEDrtlriW~~~--e~~-------------------------------------------------------  252 (745)
T KOG0301|consen  230 SDGLIVSTGEDRTLRIWKKD--ECV-------------------------------------------------------  252 (745)
T ss_pred             CCCeEEEecCCceEEEeecC--ceE-------------------------------------------------------
Confidence            88999999999999999977  322                                                       


Q ss_pred             eEEEEeCCCceEEEEecCCCEEEEEEeCCcEEEEEEecC
Q 014977          352 FAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDPV  390 (415)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~i~~~~~dg~~~~~~~~~~  390 (415)
                       +.+.+|......+.+-.++.|+++|+||.||||..++.
T Consensus       253 -q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k~  290 (745)
T KOG0301|consen  253 -QVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDKD  290 (745)
T ss_pred             -EEEecCccceEEEEEeeCCCEEEeccCceEEEEEeccc
Confidence             46788876666777777899999999999999999853

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2e-25  Score=198.65  Aligned_cols=243  Identities=13%  Similarity=0.156  Sum_probs=194.3

Q ss_pred             CCCCCCceEEEEEeCCCC-EEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEE
Q 014977           40 SDVDEIELISVSWNQDYG-CFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII  118 (415)
Q Consensus        40 ~~~h~~~V~~l~~sp~g~-~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~v  118 (415)
                      .....+.|.+++|+|... -+|+.+.-.+.||+..+.....  .+..-...+.++.|..||.+++.|+..     |.|+|
T Consensus        22 ~~ke~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k--~~srFk~~v~s~~fR~DG~LlaaGD~s-----G~V~v   94 (487)
T KOG0310|consen   22 VHKEHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRK--TFSRFKDVVYSVDFRSDGRLLAAGDES-----GHVKV   94 (487)
T ss_pred             cccccCcceeEecCCCCCCceEEecccEEEEEecchhhhhh--hHHhhccceeEEEeecCCeEEEccCCc-----CcEEE
Confidence            344567899999999665 4777778889999987643322  232456678889999999999999988     99999


Q ss_pred             EECCCCCEEEEEE-ccCceeEEEEcCCeEEEE----eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeC
Q 014977          119 WDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG  193 (415)
Q Consensus       119 wd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  193 (415)
                      +|..+...++.+. |..++..+.|+|++..++    .|+.+++||+.+......+.+|..  .+.+.++.|.+..++++|
T Consensus        95 fD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htD--YVR~g~~~~~~~hivvtG  172 (487)
T KOG0310|consen   95 FDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTD--YVRCGDISPANDHIVVTG  172 (487)
T ss_pred             eccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcc--eeEeeccccCCCeEEEec
Confidence            9977766677776 999999999999776655    678899999998887557788887  556666666666677789


Q ss_pred             CccCeEEEEEcCCc-ceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEE-EEEecCCCcccEEEEEeCC
Q 014977          194 LQRGQVRIEHFGLN-MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRL-QEVRRGVDRAEIYSIALSP  271 (415)
Q Consensus       194 ~~dg~v~i~~~~~~-~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~-~~~~~~~~~~~v~~l~~sp  271 (415)
                      +.||.|++|+.+.. ....-..|..+|..+.+-|.|.++++++.+ . |+|||+-+|..+ ..+..  |...|+|+.+..
T Consensus       173 sYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn-~-vkVWDl~~G~qll~~~~~--H~KtVTcL~l~s  248 (487)
T KOG0310|consen  173 SYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGN-S-VKVWDLTTGGQLLTSMFN--HNKTVTCLRLAS  248 (487)
T ss_pred             CCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCC-e-EEEEEecCCceehhhhhc--ccceEEEEEeec
Confidence            99999999998776 333334699999999999999999998865 3 999999866544 33333  777999999999


Q ss_pred             CCCEEEEEeCCCeEEEEEceeccc
Q 014977          272 NVQWLAVASDKGTVHIFSLRVRVV  295 (415)
Q Consensus       272 dg~~l~s~s~dg~i~vwd~~~~~~  295 (415)
                      ++..|++++-|+.|++||+.+-+.
T Consensus       249 ~~~rLlS~sLD~~VKVfd~t~~Kv  272 (487)
T KOG0310|consen  249 DSTRLLSGSLDRHVKVFDTTNYKV  272 (487)
T ss_pred             CCceEeecccccceEEEEccceEE
Confidence            999999999999999999777663

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.94  E-value=1.3e-24  Score=222.79  Aligned_cols=236  Identities=14%  Similarity=0.220  Sum_probs=191.5

Q ss_pred             CCCceEEEEEeC-CCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCeEEEE
Q 014977           43 DEIELISVSWNQ-DYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIW  119 (415)
Q Consensus        43 h~~~V~~l~~sp-~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~i~vw  119 (415)
                      +...|.+++|++ ++.+|++++ |+.|+|||+.+.+....  +..|...+.++.|++ ++.+|++++.|     +.|++|
T Consensus       531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~--~~~H~~~V~~l~~~p~~~~~L~Sgs~D-----g~v~iW  603 (793)
T PLN00181        531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTE--MKEHEKRVWSIDYSSADPTLLASGSDD-----GSVKLW  603 (793)
T ss_pred             ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEE--ecCCCCCEEEEEEcCCCCCEEEEEcCC-----CEEEEE
Confidence            356789999987 478899999 99999999987654433  447888899999996 78889999988     999999


Q ss_pred             ECCCCCEEEEEEccCceeEEEEc-CCeEEEE---eCCeEEEEEcCCce-eeeEEeccCCCcceEEEecCCCceEEEEeCC
Q 014977          120 DDHQSRCIGEFAFRSDVRSVKLS-RDRIVVV---LEHKIYVYSFVDLK-LLHQIETLANLRGLCCLSHHSSTSVLACPGL  194 (415)
Q Consensus       120 d~~~~~~~~~~~~~~~i~~l~~~-~~~~~~~---~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  194 (415)
                      |+.++..+..+.+...+.++.|+ +++..++   .|+.|++||+++.+ .+..+.+|...+..+.+  . ++.++++ ++
T Consensus       604 d~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f--~-~~~~lvs-~s  679 (793)
T PLN00181        604 SINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRF--V-DSSTLVS-SS  679 (793)
T ss_pred             ECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEE--e-CCCEEEE-EE
Confidence            99999999888877789999995 4677766   69999999998765 45667777775554444  3 3445655 66


Q ss_pred             ccCeEEEEEcCC-------cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEec----------
Q 014977          195 QRGQVRIEHFGL-------NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR----------  257 (415)
Q Consensus       195 ~dg~v~i~~~~~-------~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~----------  257 (415)
                      .|++|++|+...       ..+..+.+|...+..++|+|++.+|++|+.|+. |++|+......+..+..          
T Consensus       680 ~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~-v~iw~~~~~~~~~s~~~~~~~~~~~~~  758 (793)
T PLN00181        680 TDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNE-VFVYHKAFPMPVLSYKFKTIDPVSGLE  758 (793)
T ss_pred             CCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCE-EEEEECCCCCceEEEecccCCcccccc
Confidence            899999999753       467788999999999999999999999999999 99999876654433221          


Q ss_pred             -CCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEc
Q 014977          258 -GVDRAEIYSIALSPNVQWLAVASDKGTVHIFSL  290 (415)
Q Consensus       258 -~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~  290 (415)
                       ..+...|.+++|+|++.+|++|+.||.|+||++
T Consensus       759 ~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        759 VDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             cCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence             113457999999999999999999999999996

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.94  E-value=2.9e-25  Score=215.08  Aligned_cols=289  Identities=17%  Similarity=0.213  Sum_probs=225.1

Q ss_pred             CCCceEEEEEeCCCCEEEEEe---CCcEEEEEccCCc-------e---eEEEeccCCCeeEEEEeeeCCeEEEEecCCCC
Q 014977           43 DEIELISVSWNQDYGCFAAGT---SCGFRIYNCEPFK-------E---TFRRDLKSGGFRIVEMLFRCNILALVGAGDNS  109 (415)
Q Consensus        43 h~~~V~~l~~sp~g~~la~g~---d~~v~iw~~~~~~-------~---~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~  109 (415)
                      ++..|.++..+|||..+|+|+   |+.++||+.+...       .   ........|...+.++.|++||.+||+|++| 
T Consensus        12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD-   90 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD-   90 (942)
T ss_pred             CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc-
Confidence            455699999999999999988   8899999986421       0   0111124788889999999999999999998 


Q ss_pred             CCCCCeEEEEECCC------------------CCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeE
Q 014977          110 QYPPTKVIIWDDHQ------------------SRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQ  167 (415)
Q Consensus       110 ~~~~~~i~vwd~~~------------------~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~  167 (415)
                          +.|.||+...                  -+.+..+. |...|.+++|+|++.+++   .|++|.||+..+++.+..
T Consensus        91 ----~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~v  166 (942)
T KOG0973|consen   91 ----RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKV  166 (942)
T ss_pred             ----ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeee
Confidence                9999999662                  12344455 999999999999999999   799999999999999999


Q ss_pred             EeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcC-CcceEEEecC------ccceEEEEeCCCCCEEEEEeC----
Q 014977          168 IETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG-LNMIKLINAH------DSHIACFTLTLDGLLLATAST----  236 (415)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~-~~~~~~~~~~------~~~i~~l~~sp~g~~l~s~s~----  236 (415)
                      +.+|..  .+-.+.|+|-|+++|+ -+.|++|++|... ....+.+..+      ...+..+.|||||++|++...    
T Consensus       167 l~~H~s--~VKGvs~DP~Gky~AS-qsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~  243 (942)
T KOG0973|consen  167 LRGHQS--LVKGVSWDPIGKYFAS-QSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGG  243 (942)
T ss_pred             eecccc--cccceEECCccCeeee-ecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCC
Confidence            999988  4556777888899987 5689999999843 3445555443      345788999999999998643    


Q ss_pred             CCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCC-----CC------------EEEEEeCCCeEEEEEceecccCCCC
Q 014977          237 RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPN-----VQ------------WLAVASDKGTVHIFSLRVRVVGEDS  299 (415)
Q Consensus       237 dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spd-----g~------------~l~s~s~dg~i~vwd~~~~~~~~~~  299 (415)
                      -.. +.|.+-.+.+.-..|-+  |.+++..+.|+|.     .+            .+|+|+.|++|.||.....++.-  
T Consensus       244 ~~~-~~IieR~tWk~~~~LvG--H~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~--  318 (942)
T KOG0973|consen  244 KST-IAIIERGTWKVDKDLVG--HSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF--  318 (942)
T ss_pred             cce-eEEEecCCceeeeeeec--CCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh--
Confidence            224 88988877787778888  8889999999971     11            57899999999999986655431  


Q ss_pred             CCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEe
Q 014977          300 SSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSM  378 (415)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~  378 (415)
                                                                +           -..+.......++|+++ -.|++++.
T Consensus       319 ------------------------------------------v-----------i~~lf~~SI~DmsWspdG~~LfacS~  345 (942)
T KOG0973|consen  319 ------------------------------------------V-----------IHNLFNKSIVDMSWSPDGFSLFACSL  345 (942)
T ss_pred             ------------------------------------------h-----------hhhhhcCceeeeeEcCCCCeEEEEec
Confidence                                                      0           11122245567899999 66777777


Q ss_pred             CCcEEEEEEecCCCCcEEE
Q 014977          379 DGSFYRCSFDPVHGGEMLQ  397 (415)
Q Consensus       379 dg~~~~~~~~~~~~~~~~~  397 (415)
                      ||+|+.+.|++.+-|+.+.
T Consensus       346 DGtV~~i~Fee~ElG~~ls  364 (942)
T KOG0973|consen  346 DGTVALIHFEEKELGVALS  364 (942)
T ss_pred             CCeEEEEEcchHHhCcccC
Confidence            9999999999977776654

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.94  E-value=2.3e-25  Score=215.88  Aligned_cols=257  Identities=18%  Similarity=0.174  Sum_probs=210.0

Q ss_pred             CccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccC------Cc----------eeEEEeccCCCeeEEEEeeeCCe
Q 014977           37 TAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEP------FK----------ETFRRDLKSGGFRIVEMLFRCNI   99 (415)
Q Consensus        37 ~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~------~~----------~~~~~~~~~~~~~~~~~~~~~~~   99 (415)
                      ..+...|.+.|+|+.|+|||++||+|+ |+.|.||+...      ++          ......+.+|...|.++.|+|++
T Consensus        62 l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~  141 (942)
T KOG0973|consen   62 LCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD  141 (942)
T ss_pred             heeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc
Confidence            345678999999999999999999999 88899999872      10          01223456899999999999999


Q ss_pred             EEEEecCCCCCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCC--
Q 014977          100 LALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLAN--  173 (415)
Q Consensus       100 ~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~--  173 (415)
                      .++++++.|     +.|.+|+..+.+.+..+. |...|..+.|.|-|++++   .|++|+||++.+....+.+..+..  
T Consensus       142 ~~lvS~s~D-----nsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~  216 (942)
T KOG0973|consen  142 SLLVSVSLD-----NSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEES  216 (942)
T ss_pred             cEEEEeccc-----ceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhC
Confidence            999999998     999999999999999888 999999999999999999   799999999887777777655432  


Q ss_pred             --CcceEEEecCCCceEEEEeCCccC---eEEEEEcCC-cceEEEecCccceEEEEeCCC--------C-----C----E
Q 014977          174 --LRGLCCLSHHSSTSVLACPGLQRG---QVRIEHFGL-NMIKLINAHDSHIACFTLTLD--------G-----L----L  230 (415)
Q Consensus       174 --~~~~~~~~~~~~~~~l~~~g~~dg---~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~--------g-----~----~  230 (415)
                        ......++|+|+|.+|++....++   ++.|-.+.. +.-..+-+|.+++.+++|+|.        |     .    .
T Consensus       217 ~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i  296 (942)
T KOG0973|consen  217 PLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCI  296 (942)
T ss_pred             CCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEE
Confidence              225678899999999987654443   455544433 446778899999999999981        1     1    5


Q ss_pred             EEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCC
Q 014977          231 LATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSS  300 (415)
Q Consensus       231 l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~  300 (415)
                      +|+|+.|++ |.||.....+++..+..- ....|.+++|+|||..|+++|.||+|.++.++..+-++.+.
T Consensus       297 ~AvgSqDrS-lSVW~T~~~RPl~vi~~l-f~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ElG~~ls  364 (942)
T KOG0973|consen  297 AAVGSQDRS-LSVWNTALPRPLFVIHNL-FNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKELGVALS  364 (942)
T ss_pred             EEEecCCcc-EEEEecCCCCchhhhhhh-hcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHhCcccC
Confidence            789999999 999998877887665543 45689999999999999999999999999998876554433

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=4.9e-26  Score=198.36  Aligned_cols=243  Identities=14%  Similarity=0.214  Sum_probs=194.1

Q ss_pred             CccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCe
Q 014977           37 TAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK  115 (415)
Q Consensus        37 ~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~  115 (415)
                      .....+|..+|..+.||||.++|++++ +..+.+||+.++....... +++...+.+.+|.||+..+++|+.|     +.
T Consensus       262 ~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~-~~~~~S~~sc~W~pDg~~~V~Gs~d-----r~  335 (519)
T KOG0293|consen  262 KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP-SGLGFSVSSCAWCPDGFRFVTGSPD-----RT  335 (519)
T ss_pred             eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcc-cCcCCCcceeEEccCCceeEecCCC-----Cc
Confidence            455789999999999999999999988 8889999999876544332 2456888999999999999999998     99


Q ss_pred             EEEEECCCCCEEEEEE--ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEE
Q 014977          116 VIIWDDHQSRCIGEFA--FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLA  190 (415)
Q Consensus       116 i~vwd~~~~~~~~~~~--~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  190 (415)
                      +..||+. |..+...+  ....|.++++++||+.++   .|..|++|+.++......+..+.   .+..++.+.++++++
T Consensus       336 i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~---~its~~iS~d~k~~L  411 (519)
T KOG0293|consen  336 IIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQ---PITSFSISKDGKLAL  411 (519)
T ss_pred             EEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccC---ceeEEEEcCCCcEEE
Confidence            9999965 44444433  346799999999999887   79999999998765554444433   456666677777766


Q ss_pred             EeCCccCeEEEEEcCC-cceEEEecCccc--eEEEEeC-CCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEE
Q 014977          191 CPGLQRGQVRIEHFGL-NMIKLINAHDSH--IACFTLT-LDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYS  266 (415)
Q Consensus       191 ~~g~~dg~v~i~~~~~-~~~~~~~~~~~~--i~~l~~s-p~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~  266 (415)
                      + .-.+..+++|+... ..++.+.+|...  +-.-+|. .+..++++|++|+. |+||+..+|+++.++.+  |...|++
T Consensus       412 v-nL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~k-vyIWhr~sgkll~~LsG--Hs~~vNc  487 (519)
T KOG0293|consen  412 V-NLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSK-VYIWHRISGKLLAVLSG--HSKTVNC  487 (519)
T ss_pred             E-EcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCce-EEEEEccCCceeEeecC--CcceeeE
Confidence            5 56789999998874 445667777654  3333454 35579999999999 99999999999999999  8889999


Q ss_pred             EEeCC-CCCEEEEEeCCCeEEEEEceec
Q 014977          267 IALSP-NVQWLAVASDKGTVHIFSLRVR  293 (415)
Q Consensus       267 l~~sp-dg~~l~s~s~dg~i~vwd~~~~  293 (415)
                      ++|+| +-.++|+|++||+|+||-....
T Consensus       488 VswNP~~p~m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  488 VSWNPADPEMFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             EecCCCCHHHhhccCCCCeEEEecCCcc
Confidence            99999 4568999999999999987754

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.94  E-value=3.7e-26  Score=193.51  Aligned_cols=248  Identities=13%  Similarity=0.215  Sum_probs=203.9

Q ss_pred             CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEe------ccCCCeeEEEEeeeCCeEEEEecCCCCCCC
Q 014977           40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRD------LKSGGFRIVEMLFRCNILALVGAGDNSQYP  112 (415)
Q Consensus        40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~  112 (415)
                      .-+.+..+.|..|+|||++|++|+ ||-|.+|+..+++......      |--+...+.++.|+.+...+++|+.|    
T Consensus       209 KFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqD----  284 (508)
T KOG0275|consen  209 KFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQD----  284 (508)
T ss_pred             ecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcC----
Confidence            346677899999999999999999 9999999998754322211      12356789999999999999999998    


Q ss_pred             CCeEEEEECCCCCEEEEEE--ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCce
Q 014977          113 PTKVIIWDDHQSRCIGEFA--FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS  187 (415)
Q Consensus       113 ~~~i~vwd~~~~~~~~~~~--~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (415)
                       |.|+||.+.+|.+++.+.  |...|+++.|+.|+..+.   .|.++++.-+..|++++.+.+|...  +....+.++|.
T Consensus       285 -GkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSy--vn~a~ft~dG~  361 (508)
T KOG0275|consen  285 -GKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSY--VNEATFTDDGH  361 (508)
T ss_pred             -CcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCcccc--ccceEEcCCCC
Confidence             999999999999999997  999999999999998877   6999999999999999999999884  44555556677


Q ss_pred             EEEEeCCccCeEEEEEcCC-cceEEEec--CccceEEEEeCCC-CCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCc-c
Q 014977          188 VLACPGLQRGQVRIEHFGL-NMIKLINA--HDSHIACFTLTLD-GLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDR-A  262 (415)
Q Consensus       188 ~l~~~g~~dg~v~i~~~~~-~~~~~~~~--~~~~i~~l~~sp~-g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~-~  262 (415)
                      .+++ ++.||+|++|+... .++.+++.  ...+|+++..-|. -..++++...++ |+|-++ .|+.++.+..+... +
T Consensus       362 ~iis-aSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsnt-v~imn~-qGQvVrsfsSGkREgG  438 (508)
T KOG0275|consen  362 HIIS-ASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNT-VYIMNM-QGQVVRSFSSGKREGG  438 (508)
T ss_pred             eEEE-ecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCe-EEEEec-cceEEeeeccCCccCC
Confidence            7765 67899999998654 56666653  4567888887774 457888888888 999997 68888888754333 4


Q ss_pred             cEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCC
Q 014977          263 EIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGE  297 (415)
Q Consensus       263 ~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~  297 (415)
                      ...+.+.+|.|.++.+.++|+.++-|.+.+|+-..
T Consensus       439 dFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~  473 (508)
T KOG0275|consen  439 DFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLER  473 (508)
T ss_pred             ceEEEEecCCCcEEEEEccCcEEEEEEeecCceee
Confidence            56677899999999999999999999999998554

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.94  E-value=7.2e-25  Score=209.34  Aligned_cols=237  Identities=14%  Similarity=0.212  Sum_probs=200.2

Q ss_pred             CCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEEC
Q 014977           43 DEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD  121 (415)
Q Consensus        43 h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~  121 (415)
                      +...+.+..|.  ..++++++ ++.|++|+..+...+.. .+.+|...+.++.+...+..+++|+.|     .++++||.
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~-~l~GH~g~V~~l~~~~~~~~lvsgS~D-----~t~rvWd~  278 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT-RLVGHFGGVWGLAFPSGGDKLVSGSTD-----KTERVWDC  278 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEe-eccCCCCCceeEEEecCCCEEEEEecC-----CcEEeEec
Confidence            57778888888  55777777 99999999988655443 366899999999998877888899988     99999999


Q ss_pred             CCCCEEEEEE-ccCceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeE
Q 014977          122 HQSRCIGEFA-FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQV  199 (415)
Q Consensus       122 ~~~~~~~~~~-~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v  199 (415)
                      .+|++...+. |...|.++...+....-. .|.+|++|++.+++.++.+.+|..++..+.+.    +.+++ +|+.|++|
T Consensus       279 ~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~----~~~lv-sgs~d~~v  353 (537)
T KOG0274|consen  279 STGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD----EPLLV-SGSYDGTV  353 (537)
T ss_pred             CCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec----CCEEE-EEecCceE
Confidence            9999999999 999999998877655554 89999999999999999998888755544444    23454 48899999


Q ss_pred             EEEEcC-CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC-cEEEEEecCCCcccEEEEEeCCCCCEEE
Q 014977          200 RIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG-TRLQEVRRGVDRAEIYSIALSPNVQWLA  277 (415)
Q Consensus       200 ~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~-~~~~~~~~~~~~~~v~~l~~spdg~~l~  277 (415)
                      ++|+.. +++++.+.+|...|+++.+.+. ..+++|+.|+. |++||+.+. +++.++..  |...+..+.+  .+++|+
T Consensus       354 ~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~-IkvWdl~~~~~c~~tl~~--h~~~v~~l~~--~~~~Lv  427 (537)
T KOG0274|consen  354 KVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTT-IKVWDLRTKRKCIHTLQG--HTSLVSSLLL--RDNFLV  427 (537)
T ss_pred             EEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccc-eEeecCCchhhhhhhhcC--Cccccccccc--ccceeE
Confidence            998865 6789999999999999988776 88999999999 999999999 89999988  7777766554  678999


Q ss_pred             EEeCCCeEEEEEceecccCCC
Q 014977          278 VASDKGTVHIFSLRVRVVGED  298 (415)
Q Consensus       278 s~s~dg~i~vwd~~~~~~~~~  298 (415)
                      +++.|++|++||..++++.++
T Consensus       428 s~~aD~~Ik~WD~~~~~~~~~  448 (537)
T KOG0274|consen  428 SSSADGTIKLWDAEEGECLRT  448 (537)
T ss_pred             eccccccEEEeecccCceeee
Confidence            999999999999999997753

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.94  E-value=4.6e-26  Score=198.61  Aligned_cols=247  Identities=15%  Similarity=0.186  Sum_probs=203.0

Q ss_pred             ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (415)
Q Consensus        38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i  116 (415)
                      .....|.+.+..+.|-++...|++|+ |..|++|++...+......+.+....+..+.|.+++..+++++.|     +.+
T Consensus       169 ~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d-----~~~  243 (459)
T KOG0288|consen  169 FVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASND-----KNL  243 (459)
T ss_pred             hhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCC-----Cce
Confidence            45678999999999999999999999 999999999876644555566777889999999999888888887     999


Q ss_pred             EEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEe
Q 014977          117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP  192 (415)
Q Consensus       117 ~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  192 (415)
                      ++|++...+...++. |...|+++.|......++   .|.+|++||+....+.+++.....   +..+...   ...+++
T Consensus       244 r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~---cnDI~~~---~~~~~S  317 (459)
T KOG0288|consen  244 RLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQ---CNDIVCS---ISDVIS  317 (459)
T ss_pred             eeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccccccc---ccceEec---ceeeee
Confidence            999999999999988 999999999988776555   799999999998888776644332   2222222   124456


Q ss_pred             CCccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCC--cccEEEEEe
Q 014977          193 GLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVD--RAEIYSIAL  269 (415)
Q Consensus       193 g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~--~~~v~~l~~  269 (415)
                      |-.|++|++|+.+. .+......+ +.|+++..+++|..|.+++.|.. +.+.|+++.+....+.....  ....+.+.|
T Consensus       318 gH~DkkvRfwD~Rs~~~~~sv~~g-g~vtSl~ls~~g~~lLsssRDdt-l~viDlRt~eI~~~~sA~g~k~asDwtrvvf  395 (459)
T KOG0288|consen  318 GHFDKKVRFWDIRSADKTRSVPLG-GRVTSLDLSMDGLELLSSSRDDT-LKVIDLRTKEIRQTFSAEGFKCASDWTRVVF  395 (459)
T ss_pred             cccccceEEEeccCCceeeEeecC-cceeeEeeccCCeEEeeecCCCc-eeeeecccccEEEEeeccccccccccceeEE
Confidence            99999999999555 455555554 49999999999999999999999 99999999988877764222  235889999


Q ss_pred             CCCCCEEEEEeCCCeEEEEEceecccCC
Q 014977          270 SPNVQWLAVASDKGTVHIFSLRVRVVGE  297 (415)
Q Consensus       270 spdg~~l~s~s~dg~i~vwd~~~~~~~~  297 (415)
                      ||++.|+++|+.||.|+||++.+++...
T Consensus       396 Spd~~YvaAGS~dgsv~iW~v~tgKlE~  423 (459)
T KOG0288|consen  396 SPDGSYVAAGSADGSVYIWSVFTGKLEK  423 (459)
T ss_pred             CCCCceeeeccCCCcEEEEEccCceEEE
Confidence            9999999999999999999999998654

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=6.9e-25  Score=202.18  Aligned_cols=241  Identities=14%  Similarity=0.133  Sum_probs=202.0

Q ss_pred             CCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEEC
Q 014977           43 DEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD  121 (415)
Q Consensus        43 h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~  121 (415)
                      +.+.|+++.|+++|.+||+|. +|.|.|||....+....... .|...+-+++|.  ...+.+|+.+     +.|..+|+
T Consensus       216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~-~h~~rvg~laW~--~~~lssGsr~-----~~I~~~dv  287 (484)
T KOG0305|consen  216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG-SHASRVGSLAWN--SSVLSSGSRD-----GKILNHDV  287 (484)
T ss_pred             CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccC-CcCceeEEEecc--CceEEEecCC-----CcEEEEEE
Confidence            378999999999999999999 99999999987665544332 278888899998  5667777777     99999999


Q ss_pred             CCCCEEEE-EE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCcc
Q 014977          122 HQSRCIGE-FA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR  196 (415)
Q Consensus       122 ~~~~~~~~-~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  196 (415)
                      +..+.... +. |...|..++|++|+.+++   .|+.+.|||....++...+..|...+..++|+|...+.+....|+.|
T Consensus       288 R~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D  367 (484)
T KOG0305|consen  288 RISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSAD  367 (484)
T ss_pred             ecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcc
Confidence            88766555 55 899999999999999999   79999999998888899999999988888888877664444445689


Q ss_pred             CeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEE--eCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCC
Q 014977          197 GQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATA--STRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQ  274 (415)
Q Consensus       197 g~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~--s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~  274 (415)
                      +.|++|+...............|.+|.|++..+.|+++  ..++. |.||+..+.+.+..+.+  |...|..++++|||.
T Consensus       368 ~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~-i~lw~~ps~~~~~~l~g--H~~RVl~la~SPdg~  444 (484)
T KOG0305|consen  368 RCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQ-ITLWKYPSMKLVAELLG--HTSRVLYLALSPDGE  444 (484)
T ss_pred             cEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCc-EEEEeccccceeeeecC--CcceeEEEEECCCCC
Confidence            99999987765544444567899999999998766654  34566 99999999999999998  888999999999999


Q ss_pred             EEEEEeCCCeEEEEEceecc
Q 014977          275 WLAVASDKGTVHIFSLRVRV  294 (415)
Q Consensus       275 ~l~s~s~dg~i~vwd~~~~~  294 (415)
                      .+++|+.|.++++|++-...
T Consensus       445 ~i~t~a~DETlrfw~~f~~~  464 (484)
T KOG0305|consen  445 TIVTGAADETLRFWNLFDER  464 (484)
T ss_pred             EEEEecccCcEEeccccCCC
Confidence            99999999999999998754

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.94  E-value=2e-25  Score=182.65  Aligned_cols=285  Identities=12%  Similarity=0.091  Sum_probs=227.6

Q ss_pred             cCCCCCCceEEEEEeC---CCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCC
Q 014977           39 FSDVDEIELISVSWNQ---DYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPT  114 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp---~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~  114 (415)
                      ...+|..+|..++|+|   +|-+|++++ |+.-.+-+-+++..+-  .|.+|...+.....+.+....+++..|     -
T Consensus         9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwig--tfeghkgavw~~~l~~na~~aasaaad-----f   81 (334)
T KOG0278|consen    9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIG--TFEGHKGAVWSATLNKNATRAASAAAD-----F   81 (334)
T ss_pred             EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEE--eeeccCcceeeeecCchhhhhhhhccc-----c
Confidence            5789999999999984   888899998 9988887777766544  466899999998888888888888887     8


Q ss_pred             eEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCc-eeeeEEeccCCCcceEEEecCCCceEEE
Q 014977          115 KVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDL-KLLHQIETLANLRGLCCLSHHSSTSVLA  190 (415)
Q Consensus       115 ~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~  190 (415)
                      +-+|||..+|..+..+.|+.-|.+++|+.|...++   .+.-++|||++.. .+...+.+|...+.-+-|... + ..|+
T Consensus        82 takvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~e-D-~~iL  159 (334)
T KOG0278|consen   82 TAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHE-D-KCIL  159 (334)
T ss_pred             hhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEecc-C-ceEE
Confidence            99999999999999999999999999999999888   5677999999654 345667778775555555443 2 3444


Q ss_pred             EeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeC
Q 014977          191 CPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALS  270 (415)
Q Consensus       191 ~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~s  270 (415)
                      + ...|++|++|+.+......-.....+|+++.++++|++|.++. .+. |.+||..+..+++.++   ....|.+..++
T Consensus       160 S-Sadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~-gss-V~Fwdaksf~~lKs~k---~P~nV~SASL~  233 (334)
T KOG0278|consen  160 S-SADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY-GSS-VKFWDAKSFGLLKSYK---MPCNVESASLH  233 (334)
T ss_pred             e-eccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEec-Cce-eEEeccccccceeecc---Ccccccccccc
Confidence            4 3689999999877654444344678999999999999877655 445 9999999999998887   45679999999


Q ss_pred             CCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCccccccc
Q 014977          271 PNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEW  350 (415)
Q Consensus       271 pdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (415)
                      |+...+++|++|..++.||..+++....                                      +             
T Consensus       234 P~k~~fVaGged~~~~kfDy~TgeEi~~--------------------------------------~-------------  262 (334)
T KOG0278|consen  234 PKKEFFVAGGEDFKVYKFDYNTGEEIGS--------------------------------------Y-------------  262 (334)
T ss_pred             CCCceEEecCcceEEEEEeccCCceeee--------------------------------------c-------------
Confidence            9999999999999999999999986531                                      0             


Q ss_pred             ceEEEEeCCCceEEEEecCCCEEEE-EEeCCcEEEEEEecCCCC
Q 014977          351 SFAQFHIPEVTHFIAAFGSQNTVVI-VSMDGSFYRCSFDPVHGG  393 (415)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~i~~-~~~dg~~~~~~~~~~~~~  393 (415)
                          .+-..+++-++.|+|++.+++ ++.||+|++|+..+.+..
T Consensus       263 ----nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  263 ----NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             ----ccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence                011236777899999955555 555999999999985544

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.93  E-value=4.8e-24  Score=175.66  Aligned_cols=238  Identities=19%  Similarity=0.261  Sum_probs=205.2

Q ss_pred             cCCCCCCceEEEEEeCC-CCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977           39 FSDVDEIELISVSWNQD-YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~-g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i  116 (415)
                      ...+|.+.|-.++|+|. ..+|++++ |..|++||....+.........+   -.-+.|+|++..++.++.|     ..|
T Consensus        59 ~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~e---ni~i~wsp~g~~~~~~~kd-----D~i  130 (313)
T KOG1407|consen   59 VYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGE---NINITWSPDGEYIAVGNKD-----DRI  130 (313)
T ss_pred             cccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCc---ceEEEEcCCCCEEEEecCc-----ccE
Confidence            46789999999999975 46788888 99999999998777766554333   3446699999999999887     999


Q ss_pred             EEEECCCCCEEEEEEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeC
Q 014977          117 IIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG  193 (415)
Q Consensus       117 ~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  193 (415)
                      ...|.++.+.+...++...+..+.|+.++.+++   ..|.|.|......++++.++.|..  .++|+.++|+|+++|+ |
T Consensus       131 t~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~s--nCicI~f~p~GryfA~-G  207 (313)
T KOG1407|consen  131 TFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPS--NCICIEFDPDGRYFAT-G  207 (313)
T ss_pred             EEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCc--ceEEEEECCCCceEee-c
Confidence            999999999999888888999999987666655   358999999999999999998875  8999999999999987 8


Q ss_pred             CccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCC
Q 014977          194 LQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPN  272 (415)
Q Consensus       194 ~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spd  272 (415)
                      +.|..+.+|+.+. -+++.+..+.-+|..+.|+.||++||+|++|.. |-|=++++|..+.+++   +.++...++|+|.
T Consensus       208 sADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~-IDIA~vetGd~~~eI~---~~~~t~tVAWHPk  283 (313)
T KOG1407|consen  208 SADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHF-IDIAEVETGDRVWEIP---CEGPTFTVAWHPK  283 (313)
T ss_pred             cccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccce-EEeEecccCCeEEEee---ccCCceeEEecCC
Confidence            8999999988764 678889999999999999999999999999999 9999999999999998   6788999999999


Q ss_pred             CCEEEEEeCC---------CeEEEEEce
Q 014977          273 VQWLAVASDK---------GTVHIFSLR  291 (415)
Q Consensus       273 g~~l~s~s~d---------g~i~vwd~~  291 (415)
                      ..+||-+..|         |++++|-+.
T Consensus       284 ~~LLAyA~ddk~~d~~reag~vKiFG~~  311 (313)
T KOG1407|consen  284 RPLLAYACDDKDGDSNREAGTVKIFGLS  311 (313)
T ss_pred             CceeeEEecCCCCccccccceeEEecCC
Confidence            9999987765         567776543

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.93  E-value=7.9e-24  Score=185.81  Aligned_cols=236  Identities=12%  Similarity=0.167  Sum_probs=201.2

Q ss_pred             CCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECC
Q 014977           44 EIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH  122 (415)
Q Consensus        44 ~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~  122 (415)
                      ...|.++...|....+++|+ |..+.++|....+.+.  .+++|...+..+.++++...+++++.|     ..|+||...
T Consensus       219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~--~~~Gh~kki~~v~~~~~~~~v~~aSad-----~~i~vws~~  291 (506)
T KOG0289|consen  219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILA--TLKGHTKKITSVKFHKDLDTVITASAD-----EIIRVWSVP  291 (506)
T ss_pred             CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhh--hccCcceEEEEEEeccchhheeecCCc-----ceEEeeccc
Confidence            35688888888878899999 8899999998755443  366999999999999999999999987     999999987


Q ss_pred             CCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCe
Q 014977          123 QSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQ  198 (415)
Q Consensus       123 ~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~  198 (415)
                      ......... |..+|+.+..+|.|.+++   .|+++.+.|++++..+.........+...+..++|+|.++.. |..|+.
T Consensus       292 ~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgt-gt~d~~  370 (506)
T KOG0289|consen  292 LSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGT-GTPDGV  370 (506)
T ss_pred             cccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEec-cCCCce
Confidence            766555555 999999999999999998   689999999999998887766566677888899999977765 899999


Q ss_pred             EEEEEcCC-cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEE
Q 014977          199 VRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLA  277 (415)
Q Consensus       199 v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~  277 (415)
                      |+||+... ..+..|.+|.++|..|+|+.+|-+|+++++|+. |++||++..+..+++... ....+.++.|.+.|.+|+
T Consensus       371 vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~-V~lwDLRKl~n~kt~~l~-~~~~v~s~~fD~SGt~L~  448 (506)
T KOG0289|consen  371 VKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGS-VKLWDLRKLKNFKTIQLD-EKKEVNSLSFDQSGTYLG  448 (506)
T ss_pred             EEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCe-EEEEEehhhcccceeecc-ccccceeEEEcCCCCeEE
Confidence            99998765 456778999999999999999999999999999 999999998888887754 233799999999999999


Q ss_pred             EEeCCCeEEEEE
Q 014977          278 VASDKGTVHIFS  289 (415)
Q Consensus       278 s~s~dg~i~vwd  289 (415)
                      .++.|=.|++++
T Consensus       449 ~~g~~l~Vy~~~  460 (506)
T KOG0289|consen  449 IAGSDLQVYICK  460 (506)
T ss_pred             eecceeEEEEEe
Confidence            997765555554

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.93  E-value=1.2e-25  Score=191.93  Aligned_cols=234  Identities=12%  Similarity=0.281  Sum_probs=189.1

Q ss_pred             ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (415)
Q Consensus        38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i  116 (415)
                      ....||++.|.|+.|..  +.+++|+ |.+|+|||+++++.+... + .|...+..+.|+.+  ++++++.|     ..+
T Consensus       231 ~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~tl-i-hHceaVLhlrf~ng--~mvtcSkD-----rsi  299 (499)
T KOG0281|consen  231 KILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLNTL-I-HHCEAVLHLRFSNG--YMVTCSKD-----RSI  299 (499)
T ss_pred             HhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhhHH-h-hhcceeEEEEEeCC--EEEEecCC-----cee
Confidence            45689999999999964  4888999 999999999997765442 2 78888999888765  45677777     999


Q ss_pred             EEEECCCCCEEE---EEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEE
Q 014977          117 IIWDDHQSRCIG---EFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVL  189 (415)
Q Consensus       117 ~vwd~~~~~~~~---~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  189 (415)
                      .|||+.....+.   .+. |...|+.+.|+..  +++   .|.+|++|++.+++.+.++.+|..  ++.|+.+.+  +++
T Consensus       300 aVWdm~sps~it~rrVLvGHrAaVNvVdfd~k--yIVsASgDRTikvW~~st~efvRtl~gHkR--GIAClQYr~--rlv  373 (499)
T KOG0281|consen  300 AVWDMASPTDITLRRVLVGHRAAVNVVDFDDK--YIVSASGDRTIKVWSTSTCEFVRTLNGHKR--GIACLQYRD--RLV  373 (499)
T ss_pred             EEEeccCchHHHHHHHHhhhhhheeeeccccc--eEEEecCCceEEEEeccceeeehhhhcccc--cceehhccC--eEE
Confidence            999987654322   222 8889999999766  444   799999999999999999999987  666676653  444


Q ss_pred             EEeCCccCeEEEEEcC-CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcE---------EEEEecCC
Q 014977          190 ACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR---------LQEVRRGV  259 (415)
Q Consensus       190 ~~~g~~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~---------~~~~~~~~  259 (415)
                       ++|+.|.+|++|+.. +.+++.+++|+.-|.++.|.  .+.+++|+.||+ |+|||+..+..         +..+..  
T Consensus       374 -VSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGk-ikvWdl~aaldpra~~~~~Cl~~lv~--  447 (499)
T KOG0281|consen  374 -VSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGK-IKVWDLQAALDPRAPASTLCLRTLVE--  447 (499)
T ss_pred             -EecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeeeccccce-EEEEecccccCCcccccchHHHhhhh--
Confidence             569999999998865 67889999999999999994  567999999999 99999987642         333344  


Q ss_pred             CcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977          260 DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       260 ~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                      |.+.|..+.|  |...|++++.|.+|.|||+..+-..
T Consensus       448 hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~~  482 (499)
T KOG0281|consen  448 HSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPPS  482 (499)
T ss_pred             ccceeEEEee--cceEEEeccCCCeEEEEEcCCCCcc
Confidence            7889999999  4578999999999999999887643

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=2.4e-25  Score=191.10  Aligned_cols=292  Identities=10%  Similarity=0.109  Sum_probs=221.6

Q ss_pred             ccccccCCCCCccCCCCCCceEEEEEeCCC-CEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEe
Q 014977           27 SASASFGHPQTAFSDVDEIELISVSWNQDY-GCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVG  104 (415)
Q Consensus        27 ~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g-~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  104 (415)
                      ..-..|..|......+|.+.|.+++=+|.. ..+|+|+ ||.|+|||+....+...  +..|...|..+++..  ..+++
T Consensus        49 KleR~fakPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~--f~AH~G~V~Gi~v~~--~~~~t  124 (433)
T KOG0268|consen   49 KLERVFAKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT--FKAHEGLVRGICVTQ--TSFFT  124 (433)
T ss_pred             HHHHHhhccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe--eecccCceeeEEecc--cceEE
Confidence            344556667677789999999999999987 7889999 99999999987554443  446777777777776  55667


Q ss_pred             cCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEeccCCCcceEEEecC
Q 014977          105 AGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHH  183 (415)
Q Consensus       105 ~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  183 (415)
                      +++|     .+|+.|.++- .++.++-....+.++.-+..+..++ ....|.|||..-..++..+.....  .+.++.++
T Consensus       125 vgdD-----KtvK~wk~~~-~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~D--ti~svkfN  196 (433)
T KOG0268|consen  125 VGDD-----KTVKQWKIDG-PPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGAD--SISSVKFN  196 (433)
T ss_pred             ecCC-----cceeeeeccC-CcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCC--ceeEEecC
Confidence            7776     9999999654 5777777788888888877777777 566899999988888888877766  44555555


Q ss_pred             CCceEEEEeCCccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC-cEEEEEecCCCc
Q 014977          184 SSTSVLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG-TRLQEVRRGVDR  261 (415)
Q Consensus       184 ~~~~~l~~~g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~-~~~~~~~~~~~~  261 (415)
                      |-...|+.++..|+.|.+++.+. .+++.+. ....-+.|+|+|++-.+++|++|.. ++.||++.. .++....+  |.
T Consensus       197 pvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~n-lY~~DmR~l~~p~~v~~d--hv  272 (433)
T KOG0268|consen  197 PVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHN-LYTYDMRNLSRPLNVHKD--HV  272 (433)
T ss_pred             CCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeecccccc-ceehhhhhhcccchhhcc--cc
Confidence            55444555566899999966554 4444432 3455678999998888999999999 999999865 45666777  88


Q ss_pred             ccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccc
Q 014977          262 AEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGV  341 (415)
Q Consensus       262 ~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (415)
                      +.|.++.|||.|+-+++|+.|.+|+||.++.+...+                                      .|..+ 
T Consensus       273 sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRd--------------------------------------iYhtk-  313 (433)
T KOG0268|consen  273 SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRD--------------------------------------IYHTK-  313 (433)
T ss_pred             eeEEEeccCCCcchhccccccceEEEeecCCCcchh--------------------------------------hhhHh-
Confidence            899999999999999999999999999999887442                                      11110 


Q ss_pred             cCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977          342 LPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~  389 (415)
                                    +.  ..+.++.|+.+ ..|++|+.||.|++|.-..
T Consensus       314 --------------RM--q~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A  346 (433)
T KOG0268|consen  314 --------------RM--QHVFCVKYSMDSKYIISGSDDGNVRLWKAKA  346 (433)
T ss_pred             --------------hh--heeeEEEEeccccEEEecCCCcceeeeecch
Confidence                          00  34567899999 5566666689999997654

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.93  E-value=3.9e-24  Score=184.82  Aligned_cols=242  Identities=13%  Similarity=0.177  Sum_probs=197.1

Q ss_pred             CccCCCCCCceEEEEEeCCCC---EEEEEe-CCcEEEEEccCCceeEEEe--ccCCCeeEEEEeeeCCeEEEEecCCCCC
Q 014977           37 TAFSDVDEIELISVSWNQDYG---CFAAGT-SCGFRIYNCEPFKETFRRD--LKSGGFRIVEMLFRCNILALVGAGDNSQ  110 (415)
Q Consensus        37 ~~~~~~h~~~V~~l~~sp~g~---~la~g~-d~~v~iw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~s~~~d~~  110 (415)
                      .....+|.++|.+++|.-...   .|++++ |.++++|.++.........  ..+|...+-++...+++..+++++.|  
T Consensus       137 ~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D--  214 (423)
T KOG0313|consen  137 IKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWD--  214 (423)
T ss_pred             EEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeeccc--
Confidence            345789999999888864333   588888 9999999998755443322  23888899999999999999999998  


Q ss_pred             CCCCeEEEEECCC-------------------------CCEEEEEE-ccCceeEEEEcCCeEEEE--eCCeEEEEEcCCc
Q 014977          111 YPPTKVIIWDDHQ-------------------------SRCIGEFA-FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDL  162 (415)
Q Consensus       111 ~~~~~i~vwd~~~-------------------------~~~~~~~~-~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~  162 (415)
                         ..|.+|+..+                         +.++..+. |..+|.++.|++.+....  .|.+|+.||+.++
T Consensus       215 ---~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg  291 (423)
T KOG0313|consen  215 ---TMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETG  291 (423)
T ss_pred             ---ceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecc
Confidence               9999999321                         22344455 889999999998555444  7999999999999


Q ss_pred             eeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCc----ceEEEecCccceEEEEeCCCCC-EEEEEeCC
Q 014977          163 KLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN----MIKLINAHDSHIACFTLTLDGL-LLATASTR  237 (415)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~----~~~~~~~~~~~i~~l~~sp~g~-~l~s~s~d  237 (415)
                      +....+.+..   ...++...+...+|++ |+.|..+++|+.+..    ..+.+.+|.+.|.++.|+|... +|++++.|
T Consensus       292 ~~~~~~~~~k---sl~~i~~~~~~~Ll~~-gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D  367 (423)
T KOG0313|consen  292 GLKSTLTTNK---SLNCISYSPLSKLLAS-GSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYD  367 (423)
T ss_pred             cceeeeecCc---ceeEeecccccceeee-cCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecC
Confidence            9988887654   5677777777777776 889999999887653    3567889999999999999665 68899999


Q ss_pred             CcEEEEEECCCCc-EEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEce
Q 014977          238 GTLIRIFNTVDGT-RLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR  291 (415)
Q Consensus       238 g~~I~vwd~~~~~-~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~  291 (415)
                      ++ +++||+++.+ +++.+.+  |...|.++.|+ ++..|++|+.|.+|+|+.-.
T Consensus       368 ~t-~klWDvRS~k~plydI~~--h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  368 NT-VKLWDVRSTKAPLYDIAG--HNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             Ce-EEEEEeccCCCcceeecc--CCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence            99 9999999887 8999998  78899999996 56789999999999998744

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=4.4e-24  Score=175.27  Aligned_cols=236  Identities=18%  Similarity=0.182  Sum_probs=178.6

Q ss_pred             EEEEEeCC-CCEEEEE--------eCCcEEEEEcc-CCceeEEEeccCCCeeEEEEeeeCCe-EEEEecCCCCCCCCCeE
Q 014977           48 ISVSWNQD-YGCFAAG--------TSCGFRIYNCE-PFKETFRRDLKSGGFRIVEMLFRCNI-LALVGAGDNSQYPPTKV  116 (415)
Q Consensus        48 ~~l~~sp~-g~~la~g--------~d~~v~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~~~~~~i  116 (415)
                      +++.|||- ..+||++        +.|.+.|-++. ..+......+ .-.....+++|+++. ..++++..|     |.+
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~-d~~D~LfdV~Wse~~e~~~~~a~GD-----GSL   85 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSY-DTEDGLFDVAWSENHENQVIAASGD-----GSL   85 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEee-ecccceeEeeecCCCcceEEEEecC-----ceE
Confidence            57788882 2233322        26778888885 3333333334 456678888998753 344444444     999


Q ss_pred             EEEECCC-CCEEEEEE-ccCceeEEEEcCCeEEEE----eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEE
Q 014977          117 IIWDDHQ-SRCIGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLA  190 (415)
Q Consensus       117 ~vwd~~~-~~~~~~~~-~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  190 (415)
                      ++||+.. ..++..++ |+.+|.++.|++..+...    .|++|++|+..-++.+.++.+|...+....++|...+ +++
T Consensus        86 rl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~n-lfa  164 (311)
T KOG0277|consen   86 RLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPN-LFA  164 (311)
T ss_pred             EEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCC-eEE
Confidence            9999533 46777777 999999999998654433    7999999999989999999999886666667766544 344


Q ss_pred             EeCCccCeEEEEEcCC-cceEEEecCccceEEEEeCC-CCCEEEEEeCCCcEEEEEECCCC-cEEEEEecCCCcccEEEE
Q 014977          191 CPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTL-DGLLLATASTRGTLIRIFNTVDG-TRLQEVRRGVDRAEIYSI  267 (415)
Q Consensus       191 ~~g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp-~g~~l~s~s~dg~~I~vwd~~~~-~~~~~~~~~~~~~~v~~l  267 (415)
                       +.+.|+++++|+.+. .....+..|...|.++.|+. +...|++|+.|+. |++||++.- .++.++.+  |.-.|..+
T Consensus       165 -s~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~-vr~wDir~~r~pl~eL~g--h~~AVRkv  240 (311)
T KOG0277|consen  165 -SASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNL-VRGWDIRNLRTPLFELNG--HGLAVRKV  240 (311)
T ss_pred             -EccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCce-EEEEehhhccccceeecC--CceEEEEE
Confidence             467899999998764 33444899999999999997 5678999999999 999999875 46778877  78899999


Q ss_pred             EeCCCC-CEEEEEeCCCeEEEEEceecc
Q 014977          268 ALSPNV-QWLAVASDKGTVHIFSLRVRV  294 (415)
Q Consensus       268 ~~spdg-~~l~s~s~dg~i~vwd~~~~~  294 (415)
                      .|||.. ..|++++.|-+++|||...+.
T Consensus       241 k~Sph~~~lLaSasYDmT~riw~~~~~d  268 (311)
T KOG0277|consen  241 KFSPHHASLLASASYDMTVRIWDPERQD  268 (311)
T ss_pred             ecCcchhhHhhhccccceEEecccccch
Confidence            999954 588999999999999998665

>PTZ00421 coronin; Provisional

Probab=99.93  E-value=2.1e-23  Score=199.00  Aligned_cols=226  Identities=14%  Similarity=0.121  Sum_probs=176.0

Q ss_pred             cCCCCCCceEEEEEeC-CCCEEEEEe-CCcEEEEEccCCce-----eEEEeccCCCeeEEEEeeeCCe-EEEEecCCCCC
Q 014977           39 FSDVDEIELISVSWNQ-DYGCFAAGT-SCGFRIYNCEPFKE-----TFRRDLKSGGFRIVEMLFRCNI-LALVGAGDNSQ  110 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp-~g~~la~g~-d~~v~iw~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~  110 (415)
                      ...+|.+.|++++|+| ++.+|++|+ |+.|+||++.+...     .....+.+|...+.++.|+|+. .+|++++.|  
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~D--  147 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGAD--  147 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCC--
Confidence            4678999999999999 889999999 99999999976431     1123455788889999999975 688888887  


Q ss_pred             CCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCc
Q 014977          111 YPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSST  186 (415)
Q Consensus       111 ~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (415)
                         +.|++||+.+++.+..+. |...|.+++|+|++.+++   .|+.|++||+++++.+..+..|..... ....+.+++
T Consensus       148 ---gtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~-~~~~w~~~~  223 (493)
T PTZ00421        148 ---MVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKS-QRCLWAKRK  223 (493)
T ss_pred             ---CEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcc-eEEEEcCCC
Confidence               999999999999888887 889999999999998887   699999999999999888887765332 223344444


Q ss_pred             eEEEEeC---CccCeEEEEEcCC--cceEEEecC-ccceEEEEeCCCCCEEEEEe-CCCcEEEEEECCCCcEEEEEecCC
Q 014977          187 SVLACPG---LQRGQVRIEHFGL--NMIKLINAH-DSHIACFTLTLDGLLLATAS-TRGTLIRIFNTVDGTRLQEVRRGV  259 (415)
Q Consensus       187 ~~l~~~g---~~dg~v~i~~~~~--~~~~~~~~~-~~~i~~l~~sp~g~~l~s~s-~dg~~I~vwd~~~~~~~~~~~~~~  259 (415)
                      ..++++|   +.|+.|++|+.+.  ..+.....+ ...+....|++++.+|++++ .|+. |++||+.+++.+...... 
T Consensus       224 ~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~-Iriwdl~~~~~~~~~~~~-  301 (493)
T PTZ00421        224 DLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGN-IRCFELMNERLTFCSSYS-  301 (493)
T ss_pred             CeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCe-EEEEEeeCCceEEEeecc-
Confidence            4555545   3589999999864  233333333 34556678999999999887 4999 999999999887665432 


Q ss_pred             CcccEEEEEeCCC
Q 014977          260 DRAEIYSIALSPN  272 (415)
Q Consensus       260 ~~~~v~~l~~spd  272 (415)
                      ...++..++|.|.
T Consensus       302 s~~~~~g~~~~pk  314 (493)
T PTZ00421        302 SVEPHKGLCMMPK  314 (493)
T ss_pred             CCCCCcceEeccc
Confidence            4456788888884

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.93  E-value=2.3e-25  Score=182.28  Aligned_cols=242  Identities=10%  Similarity=0.094  Sum_probs=197.0

Q ss_pred             cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~  117 (415)
                      ...+|+++|++..++.+..+-|++. |=+-+|||.-++..+..  | .|..-+..++|+.+...|++++.+     ..++
T Consensus        54 tfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhs--f-~hkhivk~~af~~ds~~lltgg~e-----kllr  125 (334)
T KOG0278|consen   54 TFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHS--F-EHKHIVKAVAFSQDSNYLLTGGQE-----KLLR  125 (334)
T ss_pred             eeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhh--h-hhhheeeeEEecccchhhhccchH-----HHhh
Confidence            4578999999999999998888888 99999999988766543  3 566678889999999999999998     9999


Q ss_pred             EEECCCCC-EEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEe
Q 014977          118 IWDDHQSR-CIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP  192 (415)
Q Consensus       118 vwd~~~~~-~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  192 (415)
                      |+|++.-+ +..++. |.+.|..+.|....+.++   .|++|++||.++++.++.+.... ++....+  +++|.+|..+
T Consensus       126 vfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s-~VtSlEv--s~dG~ilTia  202 (334)
T KOG0278|consen  126 VFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNS-PVTSLEV--SQDGRILTIA  202 (334)
T ss_pred             hhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCC-CCcceee--ccCCCEEEEe
Confidence            99987653 455555 899999999987666665   69999999999999999997654 2344444  4556666442


Q ss_pred             CCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEE-ecCCCcccEEEEEeCC
Q 014977          193 GLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEV-RRGVDRAEIYSIALSP  271 (415)
Q Consensus       193 g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~-~~~~~~~~v~~l~~sp  271 (415)
                        ..+.|.+|+...-.+..-..-...|.+..++|+...+++|++|.. ++.||..+|+.+..+ ++  |.++|.++.|+|
T Consensus       203 --~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~-~~kfDy~TgeEi~~~nkg--h~gpVhcVrFSP  277 (334)
T KOG0278|consen  203 --YGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFK-VYKFDYNTGEEIGSYNKG--HFGPVHCVRFSP  277 (334)
T ss_pred             --cCceeEEeccccccceeeccCccccccccccCCCceEEecCcceE-EEEEeccCCceeeecccC--CCCceEEEEECC
Confidence              466888888765333222234567888999999999999999999 999999999998886 45  888999999999


Q ss_pred             CCCEEEEEeCCCeEEEEEceecccC
Q 014977          272 NVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       272 dg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                      ||...++|+.||+|+||....++..
T Consensus       278 dGE~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  278 DGELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             CCceeeccCCCceEEEEEecCCCch
Confidence            9999999999999999999877754

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.93  E-value=2e-25  Score=189.13  Aligned_cols=240  Identities=13%  Similarity=0.189  Sum_probs=208.0

Q ss_pred             CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEE
Q 014977           40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII  118 (415)
Q Consensus        40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~v  118 (415)
                      ..-+.++|.|+.|+.|..+||+|+ ||.|+||.+.++..+.+.. ..|..++.++.|+.++..+.+++.|     .++++
T Consensus       259 fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFd-rAHtkGvt~l~FSrD~SqiLS~sfD-----~tvRi  332 (508)
T KOG0275|consen  259 FMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFD-RAHTKGVTCLSFSRDNSQILSASFD-----QTVRI  332 (508)
T ss_pred             eeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhh-hhhccCeeEEEEccCcchhhccccc-----ceEEE
Confidence            345789999999999999999999 9999999999977654432 3788999999999999999999998     99999


Q ss_pred             EECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCce-EEEEeC
Q 014977          119 WDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS-VLACPG  193 (415)
Q Consensus       119 wd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~g  193 (415)
                      .-+++|+++++++ |...|+...|.++|..++   .||+|++|+..+.+++.+++.......+..+..-|.+. .++ .+
T Consensus       333 HGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~i-VC  411 (508)
T KOG0275|consen  333 HGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFI-VC  411 (508)
T ss_pred             eccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEE-EE
Confidence            9999999999999 999999999999999888   79999999999999999997766555555555444432 233 35


Q ss_pred             CccCeEEEEEcCCcceEEEecC---ccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeC
Q 014977          194 LQRGQVRIEHFGLNMIKLINAH---DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALS  270 (415)
Q Consensus       194 ~~dg~v~i~~~~~~~~~~~~~~---~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~s  270 (415)
                      ...++|+|-+..++.++.+...   .+...+..++|.|.++.+.++|+. ++.|.+.+|+...++..  |...|..++-+
T Consensus       412 Nrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~v-lYCF~~~sG~LE~tl~V--hEkdvIGl~HH  488 (508)
T KOG0275|consen  412 NRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGV-LYCFSVLSGKLERTLPV--HEKDVIGLTHH  488 (508)
T ss_pred             cCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcE-EEEEEeecCceeeeeec--ccccccccccC
Confidence            6788999999999999988643   345667789999999999999999 99999999999999988  77889999999


Q ss_pred             CCCCEEEEEeCCCeEEEEE
Q 014977          271 PNVQWLAVASDKGTVHIFS  289 (415)
Q Consensus       271 pdg~~l~s~s~dg~i~vwd  289 (415)
                      |..+.||+-++||.+++|.
T Consensus       489 PHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  489 PHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             cccchhhhhcccchhhhcC
Confidence            9999999999999999995

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=2.4e-23  Score=174.97  Aligned_cols=247  Identities=12%  Similarity=0.119  Sum_probs=188.9

Q ss_pred             cCCCCCCceEEEEEeC-CCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977           39 FSDVDEIELISVSWNQ-DYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp-~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i  116 (415)
                      ....-.+.|.+|+||| ...++++|+ |++||+|+++..+...-+....+...+.+++|+.++..+++++.|     +.+
T Consensus        22 v~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~D-----k~~   96 (347)
T KOG0647|consen   22 VPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCD-----KQA   96 (347)
T ss_pred             cCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccC-----Cce
Confidence            3445678899999999 445566777 999999999875444444455788999999999999999999988     999


Q ss_pred             EEEECCCCCEEEEEEccCceeEEEEcCCeE--EEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEE
Q 014977          117 IIWDDHQSRCIGEFAFRSDVRSVKLSRDRI--VVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC  191 (415)
Q Consensus       117 ~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~--~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  191 (415)
                      ++||+.+++..+.-.|..+|..+.|-+...  .++   .|.+|+.||++...++.++..+.   .+.++..  ...++++
T Consensus        97 k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe---RvYa~Dv--~~pm~vV  171 (347)
T KOG0647|consen   97 KLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE---RVYAADV--LYPMAVV  171 (347)
T ss_pred             EEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc---eeeehhc--cCceeEE
Confidence            999999998877777999999999987655  444   79999999999988888887655   3343333  2234443


Q ss_pred             eCCccCeEEEEEcCCcceE--EEe-cCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC--cEEEEEecCCC------
Q 014977          192 PGLQRGQVRIEHFGLNMIK--LIN-AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG--TRLQEVRRGVD------  260 (415)
Q Consensus       192 ~g~~dg~v~i~~~~~~~~~--~~~-~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~--~~~~~~~~~~~------  260 (415)
                       +..++.|.++.+......  .+. .-+-.+.+|+..+|....+.|+-+|. +.|..+..+  +.-..|+.|..      
T Consensus       172 -ata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGr-v~iq~id~~~~~~nFtFkCHR~~~~~~~  249 (347)
T KOG0647|consen  172 -ATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGR-VAIQYIDDPNPKDNFTFKCHRSTNSVND  249 (347)
T ss_pred             -EecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecce-EEEEecCCCCccCceeEEEeccCCCCCC
Confidence             557888999877553321  111 23456789999898888899999999 999998876  44445554211      


Q ss_pred             -cccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCC
Q 014977          261 -RAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGE  297 (415)
Q Consensus       261 -~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~  297 (415)
                       --.|++|+|+|....|++++.||++.+||-+...+..
T Consensus       250 ~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk  287 (347)
T KOG0647|consen  250 DVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLK  287 (347)
T ss_pred             ceEEecceEeecccceEEEecCCceEEEecchhhhhhh
Confidence             1257889999999999999999999999987776543

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.93  E-value=3.7e-24  Score=180.38  Aligned_cols=247  Identities=14%  Similarity=0.200  Sum_probs=195.5

Q ss_pred             ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCC----------------ceeEEEeccCCCeeEEEEeeeCCeE
Q 014977           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPF----------------KETFRRDLKSGGFRIVEMLFRCNIL  100 (415)
Q Consensus        38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~  100 (415)
                      .-...|+.++.+.+|++||.++|+|+ |..|+|.|++..                ..-..+.+-.|...+..+.|+|...
T Consensus       106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~  185 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET  185 (430)
T ss_pred             EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence            34578999999999999999999999 999999998710                0012234457778899999999999


Q ss_pred             EEEecCCCCCCCCCeEEEEECCCCCE---EEEEEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEec-cCC
Q 014977          101 ALVGAGDNSQYPPTKVIIWDDHQSRC---IGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIET-LAN  173 (415)
Q Consensus       101 ~l~s~~~d~~~~~~~i~vwd~~~~~~---~~~~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~-~~~  173 (415)
                      +|++++.|     ++|+++|...-..   .+.++...+|.++.|+|.|.+++   ....+++||+++.++...-.. ...
T Consensus       186 ILiS~srD-----~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qh  260 (430)
T KOG0640|consen  186 ILISGSRD-----NTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQH  260 (430)
T ss_pred             eEEeccCC-----CeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccc
Confidence            99999998     9999999765433   33344678999999999999888   567899999999887654421 222


Q ss_pred             CcceEEEecCCCceEEEEeCCccCeEEEEE-cCCcceEEEe-cC-ccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCc
Q 014977          174 LRGLCCLSHHSSTSVLACPGLQRGQVRIEH-FGLNMIKLIN-AH-DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT  250 (415)
Q Consensus       174 ~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~-~~~~~~~~~~-~~-~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~  250 (415)
                      ...+.++.+++.+.+.++ ++.||.|+||+ ..++++.++. +| ...|.+..|..+|+++++.+.|.. +++|.+.+++
T Consensus       261 t~ai~~V~Ys~t~~lYvT-aSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~-vkLWEi~t~R  338 (430)
T KOG0640|consen  261 TGAITQVRYSSTGSLYVT-ASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDST-VKLWEISTGR  338 (430)
T ss_pred             ccceeEEEecCCccEEEE-eccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcce-eeeeeecCCc
Confidence            236677778877776654 88999999987 4567777764 55 457899999999999999999999 9999999988


Q ss_pred             EEEEEec-----------------------------------------------CCCcccEEEEEeCCCCCEEEEEeCCC
Q 014977          251 RLQEVRR-----------------------------------------------GVDRAEIYSIALSPNVQWLAVASDKG  283 (415)
Q Consensus       251 ~~~~~~~-----------------------------------------------~~~~~~v~~l~~spdg~~l~s~s~dg  283 (415)
                      .+.++.+                                               ..|.+.+..+.-||.+.-+++++.|-
T Consensus       339 ~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~  418 (430)
T KOG0640|consen  339 MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDF  418 (430)
T ss_pred             eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccc
Confidence            7766543                                               12556677788888888899999999


Q ss_pred             eEEEEEce
Q 014977          284 TVHIFSLR  291 (415)
Q Consensus       284 ~i~vwd~~  291 (415)
                      .+++|--+
T Consensus       419 raRFWyrr  426 (430)
T KOG0640|consen  419 RARFWYRR  426 (430)
T ss_pred             eeeeeeec
Confidence            99999644

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=8.7e-22  Score=159.17  Aligned_cols=282  Identities=16%  Similarity=0.230  Sum_probs=214.0

Q ss_pred             CCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCC------------c-eeEEEeccCCCeeEEEEeeeCCeEEEEecCC
Q 014977           42 VDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPF------------K-ETFRRDLKSGGFRIVEMLFRCNILALVGAGD  107 (415)
Q Consensus        42 ~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~------------~-~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  107 (415)
                      .....|.+++|+|.|.+.|+|+ ..+++|-.....            . .+..+.-+.|...+.+.+|++.+.++++++.
T Consensus        30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsn  109 (350)
T KOG0641|consen   30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSN  109 (350)
T ss_pred             cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCC
Confidence            4456799999999999999999 888887644210            0 1111223467788999999999999999999


Q ss_pred             CCCCCCCeEEEEECCCCCE-----EEEEE-ccCceeEEEEcCC----eEEEE----eCCeEEEEEcCCceeeeEEeccCC
Q 014977          108 NSQYPPTKVIIWDDHQSRC-----IGEFA-FRSDVRSVKLSRD----RIVVV----LEHKIYVYSFVDLKLLHQIETLAN  173 (415)
Q Consensus       108 d~~~~~~~i~vwd~~~~~~-----~~~~~-~~~~i~~l~~~~~----~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~  173 (415)
                      |     .+|++.-.....+     -.++. |.+.|++++|..+    +.+++    .|..|++-|...++..+.+.+|..
T Consensus       110 d-----k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtg  184 (350)
T KOG0641|consen  110 D-----KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTG  184 (350)
T ss_pred             C-----ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcc
Confidence            8     9999987654332     22344 8999999999643    55555    577899999999999999999887


Q ss_pred             CcceEE-EecCCCceEEEEeCCccCeEEEEEcCCc-ceEEEec--C-----ccceEEEEeCCCCCEEEEEeCCCcEEEEE
Q 014977          174 LRGLCC-LSHHSSTSVLACPGLQRGQVRIEHFGLN-MIKLINA--H-----DSHIACFTLTLDGLLLATASTRGTLIRIF  244 (415)
Q Consensus       174 ~~~~~~-~~~~~~~~~l~~~g~~dg~v~i~~~~~~-~~~~~~~--~-----~~~i~~l~~sp~g~~l~s~s~dg~~I~vw  244 (415)
                        .+++ ++|+.   .++++|+.|.+|++|+.+-. ++.++..  |     ...|.+++..|.|++|++|-.|.. ..+|
T Consensus       185 --hilalyswn~---~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dss-c~ly  258 (350)
T KOG0641|consen  185 --HILALYSWNG---AMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSS-CMLY  258 (350)
T ss_pred             --cEEEEEEecC---cEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCc-eEEE
Confidence              4444 34543   34556999999999998754 3444321  2     357899999999999999999999 9999


Q ss_pred             ECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCC
Q 014977          245 NTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLIS  324 (415)
Q Consensus       245 d~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (415)
                      |++.++.++.+..  |...|.++.|+|...+|++++.|..|++-|++..-..                            
T Consensus       259 dirg~r~iq~f~p--hsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~----------------------------  308 (350)
T KOG0641|consen  259 DIRGGRMIQRFHP--HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAH----------------------------  308 (350)
T ss_pred             EeeCCceeeeeCC--CccceeEEEeCCCceEEEEecccceEEEeecccchhh----------------------------
Confidence            9999999999988  8899999999999999999999999999998754321                            


Q ss_pred             CCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEe
Q 014977          325 PSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFD  388 (415)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~  388 (415)
                                      .||.+.        +--..+-...|.|+++ =..+..+.|-++-+|.+.
T Consensus       309 ----------------el~~~v--------v~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  309 ----------------ELPIMV--------VAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             ----------------cCceEE--------EEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence                            233221        1111234456889998 567777779999998764

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.6e-23  Score=176.99  Aligned_cols=240  Identities=16%  Similarity=0.210  Sum_probs=191.3

Q ss_pred             cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeE--EEEecCCCCCCCCCe
Q 014977           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNIL--ALVGAGDNSQYPPTK  115 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~s~~~d~~~~~~~  115 (415)
                      ....|.+.|++++.+  +.++|+|+ |.+|+|||+....+.-..  -.|...+.++.|.+...  .|.++.+|     |.
T Consensus        38 ~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~l--l~HagsitaL~F~~~~S~shLlS~sdD-----G~  108 (362)
T KOG0294|consen   38 AFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGIL--LSHAGSITALKFYPPLSKSHLLSGSDD-----GH  108 (362)
T ss_pred             cccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcce--eccccceEEEEecCCcchhheeeecCC-----Cc
Confidence            367899999999986  78999999 999999999875544332  26788899999988764  77888887     99


Q ss_pred             EEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEE
Q 014977          116 VIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC  191 (415)
Q Consensus       116 i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  191 (415)
                      |.+|+...-.++..++ |.+.|+.++++|.+++.+   .|+.++.||+-.|+.-..+.....+ ..  +.|+++|.+++.
T Consensus       109 i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~a-t~--v~w~~~Gd~F~v  185 (362)
T KOG0294|consen  109 IIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKA-TL--VSWSPQGDHFVV  185 (362)
T ss_pred             EEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcc-ee--eEEcCCCCEEEE
Confidence            9999999999999998 899999999999999887   7999999999888876666544321 33  555567776665


Q ss_pred             eCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEe--
Q 014977          192 PGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIAL--  269 (415)
Q Consensus       192 ~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~--  269 (415)
                      .+  ...|-+|......+.........+.++.|- ++..|++|..|+. |.+||..+..++..+.+  |...|.++.+  
T Consensus       186 ~~--~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~-i~~~D~ds~~~~~~~~A--H~~RVK~i~~~~  259 (362)
T KOG0294|consen  186 SG--RNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEW-ISLKDTDSDTPLTEFLA--HENRVKDIASYT  259 (362)
T ss_pred             Ee--ccEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCce-EEEeccCCCccceeeec--chhheeeeEEEe
Confidence            43  346777776665444333334556677775 5567899999999 99999999999999998  8899999984  


Q ss_pred             CCCCCEEEEEeCCCeEEEEEceecccC
Q 014977          270 SPNVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       270 spdg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                      .|++.+|++++.||.|+|||++...+.
T Consensus       260 ~~~~~~lvTaSSDG~I~vWd~~~~~k~  286 (362)
T KOG0294|consen  260 NPEHEYLVTASSDGFIKVWDIDMETKK  286 (362)
T ss_pred             cCCceEEEEeccCceEEEEEccccccC
Confidence            478899999999999999999987544

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=2.7e-23  Score=191.68  Aligned_cols=277  Identities=14%  Similarity=0.130  Sum_probs=223.0

Q ss_pred             EEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEE
Q 014977           48 ISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCI  127 (415)
Q Consensus        48 ~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~  127 (415)
                      +-+.|+ ....||+|....|.+|+..+........+  +...+.++.|+++|..|+.|..+     |.|.|||..+.+.+
T Consensus       181 nlldWs-s~n~laValg~~vylW~~~s~~v~~l~~~--~~~~vtSv~ws~~G~~LavG~~~-----g~v~iwD~~~~k~~  252 (484)
T KOG0305|consen  181 NLLDWS-SANVLAVALGQSVYLWSASSGSVTELCSF--GEELVTSVKWSPDGSHLAVGTSD-----GTVQIWDVKEQKKT  252 (484)
T ss_pred             hHhhcc-cCCeEEEEecceEEEEecCCCceEEeEec--CCCceEEEEECCCCCEEEEeecC-----CeEEEEehhhcccc
Confidence            445677 56689999999999999988664444443  37889999999999999999888     99999999998888


Q ss_pred             EEEE--ccCceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeE-EeccCCCcceEEEecCCCceEEEEeCCccCeEEEEE
Q 014977          128 GEFA--FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQ-IETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEH  203 (415)
Q Consensus       128 ~~~~--~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~  203 (415)
                      ..+.  |...|.+++|+....... .++.|..+|++..+.... +.+|..  .++.+.+++++.++|. |+.|+.+.||+
T Consensus       253 ~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~q--eVCgLkws~d~~~lAS-GgnDN~~~Iwd  329 (484)
T KOG0305|consen  253 RTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQ--EVCGLKWSPDGNQLAS-GGNDNVVFIWD  329 (484)
T ss_pred             ccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccc--eeeeeEECCCCCeecc-CCCccceEecc
Confidence            8876  689999999994443333 799999999988766555 666666  7888888889999986 77999999988


Q ss_pred             c-CCcceEEEecCccceEEEEeCC-CCCEEEEEe--CCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEE-
Q 014977          204 F-GLNMIKLINAHDSHIACFTLTL-DGLLLATAS--TRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAV-  278 (415)
Q Consensus       204 ~-~~~~~~~~~~~~~~i~~l~~sp-~g~~l~s~s--~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s-  278 (415)
                      . ...+...+..|.+.|.+++|+| ...+||+|+  .|+. |++||..+++.+..+..   .+.|..|.|++..+-|++ 
T Consensus       330 ~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~-i~fwn~~~g~~i~~vdt---gsQVcsL~Wsk~~kEi~st  405 (484)
T KOG0305|consen  330 GLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRC-IKFWNTNTGARIDSVDT---GSQVCSLIWSKKYKELLST  405 (484)
T ss_pred             CCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccE-EEEEEcCCCcEeccccc---CCceeeEEEcCCCCEEEEe
Confidence            7 4567888999999999999999 456888865  5888 99999999999988874   457999999998876665 


Q ss_pred             -EeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEe
Q 014977          279 -ASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHI  357 (415)
Q Consensus       279 -~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (415)
                       |..++.|.||+..+.+....+..|                                                       
T Consensus       406 hG~s~n~i~lw~~ps~~~~~~l~gH-------------------------------------------------------  430 (484)
T KOG0305|consen  406 HGYSENQITLWKYPSMKLVAELLGH-------------------------------------------------------  430 (484)
T ss_pred             cCCCCCcEEEEeccccceeeeecCC-------------------------------------------------------
Confidence             445678999999987655433333                                                       


Q ss_pred             CCCceEEEEecCC-CEEEEEEeCCcEEEEEEecCCCCcE
Q 014977          358 PEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDPVHGGEM  395 (415)
Q Consensus       358 ~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~~~~~~~  395 (415)
                       ...+..++++|+ ..|+++++|.++.+|++-.....++
T Consensus       431 -~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~~~~~~  468 (484)
T KOG0305|consen  431 -TSRVLYLALSPDGETIVTGAADETLRFWNLFDERPKST  468 (484)
T ss_pred             -cceeEEEEECCCCCEEEEecccCcEEeccccCCCCccc
Confidence             123455789999 8899999999999999987544333

>PTZ00421 coronin; Provisional

Probab=99.92  E-value=8.1e-23  Score=194.97  Aligned_cols=244  Identities=13%  Similarity=0.109  Sum_probs=178.9

Q ss_pred             CCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEE-----------EeccCCCeeEEEEeeeC-CeEEEEecCCC
Q 014977           42 VDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFR-----------RDLKSGGFRIVEMLFRC-NILALVGAGDN  108 (415)
Q Consensus        42 ~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~-~~~~l~s~~~d  108 (415)
                      .|-..|.....++++..+++++ +.....|+...+..++.           ..+.+|...|.++.|+| ++..|++++.|
T Consensus        18 ~~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~D   97 (493)
T PTZ00421         18 RHFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASED   97 (493)
T ss_pred             cceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCC
Confidence            3455566666777766555555 55555666543221110           11347888899999999 78889999988


Q ss_pred             CCCCCCeEEEEECCCCC-------EEEEEE-ccCceeEEEEcCCe-EEEE---eCCeEEEEEcCCceeeeEEeccCCCcc
Q 014977          109 SQYPPTKVIIWDDHQSR-------CIGEFA-FRSDVRSVKLSRDR-IVVV---LEHKIYVYSFVDLKLLHQIETLANLRG  176 (415)
Q Consensus       109 ~~~~~~~i~vwd~~~~~-------~~~~~~-~~~~i~~l~~~~~~-~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~  176 (415)
                           +.|++||+.++.       .+..+. |...|.+++|+|++ .+++   .|+.|+|||+.+++.+..+..|...  
T Consensus        98 -----gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~--  170 (493)
T PTZ00421         98 -----GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQ--  170 (493)
T ss_pred             -----CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCc--
Confidence                 999999987652       455555 88999999999975 4554   6999999999999988888888774  


Q ss_pred             eEEEecCCCceEEEEeCCccCeEEEEEcC-CcceEEEecCccc-eEEEEeCCCCCEEEEEe----CCCcEEEEEECCCCc
Q 014977          177 LCCLSHHSSTSVLACPGLQRGQVRIEHFG-LNMIKLINAHDSH-IACFTLTLDGLLLATAS----TRGTLIRIFNTVDGT  250 (415)
Q Consensus       177 ~~~~~~~~~~~~l~~~g~~dg~v~i~~~~-~~~~~~~~~~~~~-i~~l~~sp~g~~l~s~s----~dg~~I~vwd~~~~~  250 (415)
                      +.++.+++++.+|++ ++.|+.|++|+.+ ++.+..+.+|.+. +..+.|.+++..|++++    .|+. |++||+++..
T Consensus       171 V~sla~spdG~lLat-gs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~-VklWDlr~~~  248 (493)
T PTZ00421        171 ITSLEWNLDGSLLCT-TSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQ-IMLWDTRKMA  248 (493)
T ss_pred             eEEEEEECCCCEEEE-ecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCe-EEEEeCCCCC
Confidence            555566667777776 7789999999876 4566777888765 45678899887777654    4788 9999998764


Q ss_pred             -EEEEEecCCCcccEEEEEeCCCCCEEEEEe-CCCeEEEEEceeccc
Q 014977          251 -RLQEVRRGVDRAEIYSIALSPNVQWLAVAS-DKGTVHIFSLRVRVV  295 (415)
Q Consensus       251 -~~~~~~~~~~~~~v~~l~~spdg~~l~s~s-~dg~i~vwd~~~~~~  295 (415)
                       ++..+... ....+....|++++++|++++ .|+.|++||+.+++.
T Consensus       249 ~p~~~~~~d-~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~  294 (493)
T PTZ00421        249 SPYSTVDLD-QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERL  294 (493)
T ss_pred             CceeEeccC-CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCce
Confidence             33333321 334566778999999999887 599999999998764

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.92  E-value=6.7e-24  Score=197.75  Aligned_cols=235  Identities=15%  Similarity=0.217  Sum_probs=203.0

Q ss_pred             CceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCC
Q 014977           45 IELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ  123 (415)
Q Consensus        45 ~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~  123 (415)
                      +-+.+..|-|.++++++|. .|.+.|||+.....+-.  .+.|...+..+...|++..+++++.|     .+|++||..-
T Consensus       413 ~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Et--i~AHdgaIWsi~~~pD~~g~vT~saD-----ktVkfWdf~l  485 (888)
T KOG0306|consen  413 GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVET--IRAHDGAIWSISLSPDNKGFVTGSAD-----KTVKFWDFKL  485 (888)
T ss_pred             ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhh--hhccccceeeeeecCCCCceEEecCC-----cEEEEEeEEE
Confidence            3688899999999999999 99999999987554433  34788899999999999999999998     9999999421


Q ss_pred             -----CCE--------EEEEEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCce
Q 014977          124 -----SRC--------IGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS  187 (415)
Q Consensus       124 -----~~~--------~~~~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (415)
                           |..        .++++....|.++.++||+++++   .|++++||-+.+.+..-.+.+|.-|+.++.++++  +.
T Consensus       486 ~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~D--Sk  563 (888)
T KOG0306|consen  486 VVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPD--SK  563 (888)
T ss_pred             EeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCC--cC
Confidence                 211        12344678999999999999999   7999999999999999999999987666666665  45


Q ss_pred             EEEEeCCccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEE
Q 014977          188 VLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYS  266 (415)
Q Consensus       188 ~l~~~g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~  266 (415)
                      +++ +|+.|.+|++|-.+. .+-+.+.+|+..|.++.|-|...++.+++.|+. |+-||-...+.++.+.+  |...|++
T Consensus       564 liv-TgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~k-vKqWDg~kFe~iq~L~~--H~~ev~c  639 (888)
T KOG0306|consen  564 LIV-TGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGK-VKQWDGEKFEEIQKLDG--HHSEVWC  639 (888)
T ss_pred             eEE-eccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcce-EEeechhhhhhheeecc--chheeee
Confidence            665 588999999998874 677889999999999999999999999999999 99999999999999999  7889999


Q ss_pred             EEeCCCCCEEEEEeCCCeEEEEEcee
Q 014977          267 IALSPNVQWLAVASDKGTVHIFSLRV  292 (415)
Q Consensus       267 l~~spdg~~l~s~s~dg~i~vwd~~~  292 (415)
                      ++.+|+|.++++++.|.+|++|.-..
T Consensus       640 Lav~~~G~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  640 LAVSPNGSFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             eEEcCCCCeEEeccCCceeEeeeccC
Confidence            99999999999999999999998654

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=5.2e-24  Score=174.84  Aligned_cols=238  Identities=13%  Similarity=0.154  Sum_probs=186.9

Q ss_pred             CCCCceEEEEEeCCCC-EEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCeEEE
Q 014977           42 VDEIELISVSWNQDYG-CFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVII  118 (415)
Q Consensus        42 ~h~~~V~~l~~sp~g~-~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~i~v  118 (415)
                      .-.+.+..++|+++.. .+++++ ||.++|||+..... ....++.|...|.++.|++ +...+++++-|     ++|++
T Consensus        58 d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~-Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD-----~TiKL  131 (311)
T KOG0277|consen   58 DTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK-PIHKFKEHKREVYSVDWNTVRRRIFLTSSWD-----GTIKL  131 (311)
T ss_pred             ecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc-chhHHHhhhhheEEeccccccceeEEeeccC-----CceEe
Confidence            3467899999998654 444555 99999999654222 3334678999999999987 44555666877     99999


Q ss_pred             EECCCCCEEEEEE-ccCceeEEEEcCCeE-EEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeC
Q 014977          119 WDDHQSRCIGEFA-FRSDVRSVKLSRDRI-VVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG  193 (415)
Q Consensus       119 wd~~~~~~~~~~~-~~~~i~~l~~~~~~~-~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  193 (415)
                      |+....+.++++. |...|....|+|... +++   .|+++++||++.......+..|..  .+.+..++.-+..++++|
T Consensus       132 W~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~--Eil~cdw~ky~~~vl~Tg  209 (311)
T KOG0277|consen  132 WDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNS--EILCCDWSKYNHNVLATG  209 (311)
T ss_pred             ecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccc--eeEeecccccCCcEEEec
Confidence            9999999999998 899999999999643 344   799999999976444444777775  455555555445566678


Q ss_pred             CccCeEEEEEcCC--cceEEEecCccceEEEEeCCCC-CEEEEEeCCCcEEEEEECCCCcE-EEEEecCCCcccEEEEEe
Q 014977          194 LQRGQVRIEHFGL--NMIKLINAHDSHIACFTLTLDG-LLLATASTRGTLIRIFNTVDGTR-LQEVRRGVDRAEIYSIAL  269 (415)
Q Consensus       194 ~~dg~v~i~~~~~--~~~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~~~-~~~~~~~~~~~~v~~l~~  269 (415)
                      +.|+.|+.|+.+.  .++..+.+|.-.|..++|||.. .+||+++.|-+ ++|||...+.. +.+...  |..-+..+.|
T Consensus       210 ~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT-~riw~~~~~ds~~e~~~~--HtEFv~g~Dw  286 (311)
T KOG0277|consen  210 GVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMT-VRIWDPERQDSAIETVDH--HTEFVCGLDW  286 (311)
T ss_pred             CCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccce-EEecccccchhhhhhhhc--cceEEecccc
Confidence            9999999999875  5677889999999999999965 58999999999 99999876543 334443  7778999999


Q ss_pred             CC-CCCEEEEEeCCCeEEEEEc
Q 014977          270 SP-NVQWLAVASDKGTVHIFSL  290 (415)
Q Consensus       270 sp-dg~~l~s~s~dg~i~vwd~  290 (415)
                      ++ ++.++|+.+.|+.++||+-
T Consensus       287 s~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  287 SLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             ccccCceeeecccccceeeecc
Confidence            97 6779999999999999983

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.92  E-value=7.7e-23  Score=195.46  Aligned_cols=242  Identities=17%  Similarity=0.253  Sum_probs=201.0

Q ss_pred             cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~  117 (415)
                      ...+|.+.|++++|..-+..|++|+ |.+++|||+.+++....  +.+|...+.++...+  ..+++|+.|     .+|+
T Consensus       244 ~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~--l~gh~stv~~~~~~~--~~~~sgs~D-----~tVk  314 (537)
T KOG0274|consen  244 RLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHS--LQGHTSSVRCLTIDP--FLLVSGSRD-----NTVK  314 (537)
T ss_pred             eccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEE--ecCCCceEEEEEccC--ceEeeccCC-----ceEE
Confidence            3789999999999998888999999 99999999998776655  446777777665443  455667777     9999


Q ss_pred             EEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCc
Q 014977          118 IWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ  195 (415)
Q Consensus       118 vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  195 (415)
                      +|++.+++++..+. |..+|+++..+.+-.+.. .|+.|++||+.++++++.+.+|..  .+.++.+++. ..+ ++|+.
T Consensus       315 VW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~--~V~sl~~~~~-~~~-~Sgs~  390 (537)
T KOG0274|consen  315 VWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTG--RVYSLIVDSE-NRL-LSGSL  390 (537)
T ss_pred             EEeccCcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCCcc--eEEEEEecCc-ceE-Eeeee
Confidence            99999999999999 999999999993333323 799999999999999999999988  5555555553 344 45889


Q ss_pred             cCeEEEEEcCCc--ceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCC
Q 014977          196 RGQVRIEHFGLN--MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNV  273 (415)
Q Consensus       196 dg~v~i~~~~~~--~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg  273 (415)
                      |++|++|+....  ++..+.+|..-+..+.+  .+++|++++.|+. |++||..++++++++.+. |...|..+++.  .
T Consensus       391 D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~-Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~  464 (537)
T KOG0274|consen  391 DTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGT-IKLWDAEEGECLRTLEGR-HVGGVSALALG--K  464 (537)
T ss_pred             ccceEeecCCchhhhhhhhcCCccccccccc--ccceeEecccccc-EEEeecccCceeeeeccC-CcccEEEeecC--c
Confidence            999999998876  88999999998866654  6789999999999 999999999999999875 45678888876  4


Q ss_pred             CEEEEEeCCCeEEEEEceecccCCCC
Q 014977          274 QWLAVASDKGTVHIFSLRVRVVGEDS  299 (415)
Q Consensus       274 ~~l~s~s~dg~i~vwd~~~~~~~~~~  299 (415)
                      ..+++++.||++++||+++++...++
T Consensus       465 ~~il~s~~~~~~~l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  465 EEILCSSDDGSVKLWDLRSGTLIRTL  490 (537)
T ss_pred             ceEEEEecCCeeEEEecccCchhhhh
Confidence            67889999999999999999876533

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=2.2e-23  Score=197.27  Aligned_cols=244  Identities=15%  Similarity=0.191  Sum_probs=190.1

Q ss_pred             CCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCC--------------------------------C--------
Q 014977           85 SGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ--------------------------------S--------  124 (415)
Q Consensus        85 ~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~--------------------------------~--------  124 (415)
                      .|...|.++.|+++|++||+++.|     +.|+||.+..                                .        
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD-----~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~  339 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGED-----GVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS  339 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCC-----ceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence            788899999999999999999998     9999998654                                0        


Q ss_pred             --------------------CEEEEEE-ccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEe
Q 014977          125 --------------------RCIGEFA-FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLS  181 (415)
Q Consensus       125 --------------------~~~~~~~-~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  181 (415)
                                          ++++.+. |.+.|.+|.|+.++.+|.  .|.+|++|++...+++..|. |.+.+++++|.
T Consensus       340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFn  418 (712)
T KOG0283|consen  340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFN  418 (712)
T ss_pred             ccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEec
Confidence                                0111222 667899999999998888  89999999999999999885 66666777777


Q ss_pred             cCCCceEEEEeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCC-
Q 014977          182 HHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVD-  260 (415)
Q Consensus       182 ~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~-  260 (415)
                      |-.+. +++ +|+-|+.|+||......+.....-..-|++++|.|||++.++|+.+|. +++|++...+....+....+ 
T Consensus       419 PvDDr-yFi-SGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~-C~fY~t~~lk~~~~~~I~~~~  495 (712)
T KOG0283|consen  419 PVDDR-YFI-SGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGY-CRFYDTEGLKLVSDFHIRLHN  495 (712)
T ss_pred             ccCCC-cEe-ecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccE-EEEEEccCCeEEEeeeEeecc
Confidence            76664 444 599999999999999888888777799999999999999999999999 99999987776655432212 


Q ss_pred             -----cccEEEEEeCCCC-CEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCc
Q 014977          261 -----RAEIYSIALSPNV-QWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSS  334 (415)
Q Consensus       261 -----~~~v~~l~~spdg-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (415)
                           ...|+++.|.|.. ..|++.+.|..|+|||.+..+...+.+...                               
T Consensus       496 ~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~-------------------------------  544 (712)
T KOG0283|consen  496 KKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFR-------------------------------  544 (712)
T ss_pred             CccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccc-------------------------------
Confidence                 1279999999743 357777889999999997766433211110                               


Q ss_pred             ccccccccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEecCC
Q 014977          335 LSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDPVH  391 (415)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~~~  391 (415)
                                             .........|+.+ ..|++++.|..||+|.++...
T Consensus       545 -----------------------n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~  579 (712)
T KOG0283|consen  545 -----------------------NTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN  579 (712)
T ss_pred             -----------------------cCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence                                   0022334677778 778888889999999997644

>PTZ00420 coronin; Provisional

Probab=99.92  E-value=2.1e-22  Score=193.13  Aligned_cols=229  Identities=10%  Similarity=0.126  Sum_probs=174.5

Q ss_pred             ccCCCCCCceEEEEEeCC-CCEEEEEe-CCcEEEEEccCCcee------EEEeccCCCeeEEEEeeeCCeE-EEEecCCC
Q 014977           38 AFSDVDEIELISVSWNQD-YGCFAAGT-SCGFRIYNCEPFKET------FRRDLKSGGFRIVEMLFRCNIL-ALVGAGDN  108 (415)
Q Consensus        38 ~~~~~h~~~V~~l~~sp~-g~~la~g~-d~~v~iw~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d  108 (415)
                      ....+|.+.|.+++|+|+ +.+||+|+ |+.|+||++.+....      ....+.+|...+.++.|+|++. ++++++.|
T Consensus        68 ~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~D  147 (568)
T PTZ00420         68 IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFD  147 (568)
T ss_pred             EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCC
Confidence            346789999999999997 78999999 999999999753211      1123457788899999999875 45788877


Q ss_pred             CCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEe---c
Q 014977          109 SQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLS---H  182 (415)
Q Consensus       109 ~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~  182 (415)
                           +.|++||+.+++.+..+.+...|.+++|+++|.+++   .|+.|+|||+++++.+..+.+|........+.   +
T Consensus       148 -----gtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~f  222 (568)
T PTZ00420        148 -----SFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGL  222 (568)
T ss_pred             -----CeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeE
Confidence                 999999999999888888888999999999999888   58999999999999999998887654333322   2


Q ss_pred             CCCceEEEEeCCcc---CeEEEEEcCC--cceEEEec--CccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEE
Q 014977          183 HSSTSVLACPGLQR---GQVRIEHFGL--NMIKLINA--HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEV  255 (415)
Q Consensus       183 ~~~~~~l~~~g~~d---g~v~i~~~~~--~~~~~~~~--~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~  255 (415)
                      .+++.+|+++|..+   ++|+||+.+.  .++..+..  +.+.+......++|.++++|+.|+. |++|++..+. +..+
T Consensus       223 s~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~t-Ir~~e~~~~~-~~~l  300 (568)
T PTZ00420        223 GGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGN-CRYYQHSLGS-IRKV  300 (568)
T ss_pred             cCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCe-EEEEEccCCc-EEee
Confidence            35666777766443   4799999873  44444332  2333334444567899999999999 9999997764 4455


Q ss_pred             ecCCCcccEEEEEeCCCC
Q 014977          256 RRGVDRAEIYSIALSPNV  273 (415)
Q Consensus       256 ~~~~~~~~v~~l~~spdg  273 (415)
                      ....+..++.+++|.|..
T Consensus       301 ~~~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        301 NEYKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             cccccCCCccceEEcccc
Confidence            544456788999999964

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=6.2e-23  Score=182.84  Aligned_cols=241  Identities=19%  Similarity=0.236  Sum_probs=192.6

Q ss_pred             CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCC-eEEEEecCCCCCCCCCeEE
Q 014977           40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCN-ILALVGAGDNSQYPPTKVI  117 (415)
Q Consensus        40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~~~~~~i~  117 (415)
                      ....+..|+++.|-.||++||+|. .|.|+|||+.+ ..++ +.+..|...+....|++. +..+++|++|     +.++
T Consensus        64 ~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-r~iL-R~~~ah~apv~~~~f~~~d~t~l~s~sDd-----~v~k  136 (487)
T KOG0310|consen   64 FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS-RVIL-RQLYAHQAPVHVTKFSPQDNTMLVSGSDD-----KVVK  136 (487)
T ss_pred             HHhhccceeEEEeecCCeEEEccCCcCcEEEecccc-HHHH-HHHhhccCceeEEEecccCCeEEEecCCC-----ceEE
Confidence            445678899999999999999999 99999999665 2222 345688888999999984 5777888887     9999


Q ss_pred             EEECCCCCEEEEEE-ccCceeEEEEcCCeEEE-E---eCCeEEEEEcCCc-eeeeEEeccCCCcceEEEecCCCceEEEE
Q 014977          118 IWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVV-V---LEHKIYVYSFVDL-KLLHQIETLANLRGLCCLSHHSSTSVLAC  191 (415)
Q Consensus       118 vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~-~---~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  191 (415)
                      +||+.+......+. |...|++.+|+|....+ +   .||+|++||++.. ..+..+. |..++..+.+-  |.+..+++
T Consensus       137 ~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~l--psgs~ias  213 (487)
T KOG0310|consen  137 YWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLAL--PSGSLIAS  213 (487)
T ss_pred             EEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEc--CCCCEEEE
Confidence            99999888654565 99999999999975543 3   7999999999876 5555554 55555555444  45567777


Q ss_pred             eCCccCeEEEEEcC-Ccc-eEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEe
Q 014977          192 PGLQRGQVRIEHFG-LNM-IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIAL  269 (415)
Q Consensus       192 ~g~~dg~v~i~~~~-~~~-~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~  269 (415)
                      +|  ...|++|+.. +.. +..+..|...|+|+.+..++..|++++-|+. |++||+.+.+.+..+.   ..++|.+++.
T Consensus       214 Ag--Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~-VKVfd~t~~Kvv~s~~---~~~pvLsiav  287 (487)
T KOG0310|consen  214 AG--GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH-VKVFDTTNYKVVHSWK---YPGPVLSIAV  287 (487)
T ss_pred             cC--CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccc-eEEEEccceEEEEeee---cccceeeEEe
Confidence            55  4689999987 433 3344459999999999999999999999999 9999988888888887   6789999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEEceecccC
Q 014977          270 SPNVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       270 spdg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                      +|+++.++.|-.+|.+.+=+...+++.
T Consensus       288 s~dd~t~viGmsnGlv~~rr~~~k~k~  314 (487)
T KOG0310|consen  288 SPDDQTVVIGMSNGLVSIRRREVKKKP  314 (487)
T ss_pred             cCCCceEEEecccceeeeehhhcccCC
Confidence            999999999999998777655555543

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=1.7e-22  Score=178.76  Aligned_cols=249  Identities=17%  Similarity=0.216  Sum_probs=207.5

Q ss_pred             CccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCcee---EEE-----------ec--cCCCeeEEEEeeeCCe
Q 014977           37 TAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKET---FRR-----------DL--KSGGFRIVEMLFRCNI   99 (415)
Q Consensus        37 ~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~---~~~-----------~~--~~~~~~~~~~~~~~~~   99 (415)
                      ......|.-+|.+++++|+.++..+++ ++.|.-|++.++...   ...           ..  ..|...+.+++.++++
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            345678999999999999999999999 999999998765432   111           01  1566778999999999


Q ss_pred             EEEEecCCCCCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCC--eEEEE-eCCeEEEEEcCCceeeeEEeccCCCc
Q 014977          100 LALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRD--RIVVV-LEHKIYVYSFVDLKLLHQIETLANLR  175 (415)
Q Consensus       100 ~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~--~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~  175 (415)
                      .++++++.|     ..|.||+..+.+.++.+. |.+.|.+++|-..  ..+.+ .|+.|++|++.....+.++.+|..  
T Consensus       215 kylatgg~d-----~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd--  287 (479)
T KOG0299|consen  215 KYLATGGRD-----RHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQD--  287 (479)
T ss_pred             cEEEecCCC-----ceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCcc--
Confidence            999999998     999999999999999988 9999999999754  34444 899999999999988988988887  


Q ss_pred             ceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEE
Q 014977          176 GLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEV  255 (415)
Q Consensus       176 ~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~  255 (415)
                      .+..+......+. +++|..|+++++|.........+.++.+.+.|++|-.+. .+++|+.+|. |.+|++...+++.+.
T Consensus       288 ~v~~IdaL~reR~-vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~-HfvsGSdnG~-IaLWs~~KKkplf~~  364 (479)
T KOG0299|consen  288 GVLGIDALSRERC-VTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDE-HFVSGSDNGS-IALWSLLKKKPLFTS  364 (479)
T ss_pred             ceeeechhcccce-EEeccccceeEEEeccccceeeeeCCCCCeeeEEEeccc-ceeeccCCce-EEEeeecccCceeEe
Confidence            5666666655554 566889999999999887778889999999999997654 6899999999 999999999888776


Q ss_pred             ecCCC----------cccEEEEEeCCCCCEEEEEeCCCeEEEEEceeccc
Q 014977          256 RRGVD----------RAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV  295 (415)
Q Consensus       256 ~~~~~----------~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~  295 (415)
                      ...++          ...|++++..|...++|+|+.+|.|++|.+..+-.
T Consensus       365 ~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r  414 (479)
T KOG0299|consen  365 RLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR  414 (479)
T ss_pred             eccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcc
Confidence            53211          12789999999999999999999999999998853

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.91  E-value=2.1e-23  Score=182.09  Aligned_cols=240  Identities=13%  Similarity=0.208  Sum_probs=193.1

Q ss_pred             ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (415)
Q Consensus        38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i  116 (415)
                      ....+..+.|+++.|.++++++++++ |+.+++|+++..+...  .+.+|...+.++.|.-....+++++.|     .+|
T Consensus       213 ~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~--TLsGHtdkVt~ak~~~~~~~vVsgs~D-----Rti  285 (459)
T KOG0288|consen  213 STLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH--TLSGHTDKVTAAKFKLSHSRVVSGSAD-----RTI  285 (459)
T ss_pred             hhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhh--hhcccccceeeehhhccccceeecccc-----chh
Confidence            34567778899999999999888888 9999999999766544  355899999999998877779999988     999


Q ss_pred             EEEECCCCCEEEEEEccCceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCc
Q 014977          117 IIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ  195 (415)
Q Consensus       117 ~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  195 (415)
                      ++||+....+.+++-....+.+|..++...+-. .|++|++||.+...+......+.   .+.++..+.++..+.+ ++.
T Consensus       286 K~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg---~vtSl~ls~~g~~lLs-ssR  361 (459)
T KOG0288|consen  286 KLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGG---RVTSLDLSMDGLELLS-SSR  361 (459)
T ss_pred             hhhhhhhhheeccccccccccceEecceeeeecccccceEEEeccCCceeeEeecCc---ceeeEeeccCCeEEee-ecC
Confidence            999999999998888788888888872221111 79999999999999988887766   3445555555656665 468


Q ss_pred             cCeEEEEEcCCcc-eEEEecC----ccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeC
Q 014977          196 RGQVRIEHFGLNM-IKLINAH----DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALS  270 (415)
Q Consensus       196 dg~v~i~~~~~~~-~~~~~~~----~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~s  270 (415)
                      |.++.+.+.+... ...+.+.    ....+.+.|||++.|+++|+.||. |+||++.++++...+........|++++|+
T Consensus       362 Ddtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgs-v~iW~v~tgKlE~~l~~s~s~~aI~s~~W~  440 (459)
T KOG0288|consen  362 DDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGS-VYIWSVFTGKLEKVLSLSTSNAAITSLSWN  440 (459)
T ss_pred             CCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCc-EEEEEccCceEEEEeccCCCCcceEEEEEc
Confidence            8899996665544 3444322    234788999999999999999999 999999999999888875344479999999


Q ss_pred             CCCCEEEEEeCCCeEEEEE
Q 014977          271 PNVQWLAVASDKGTVHIFS  289 (415)
Q Consensus       271 pdg~~l~s~s~dg~i~vwd  289 (415)
                      |.|..|++++.++.+.+|.
T Consensus       441 ~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  441 PSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             CCCchhhcccCCcceEecC
Confidence            9999999999999999993

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=1.6e-23  Score=192.32  Aligned_cols=244  Identities=15%  Similarity=0.275  Sum_probs=198.5

Q ss_pred             CCCCceE---EEEEe-CCCCEEEEEe-CCcEEEEEccCCcee----EEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCC
Q 014977           42 VDEIELI---SVSWN-QDYGCFAAGT-SCGFRIYNCEPFKET----FRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYP  112 (415)
Q Consensus        42 ~h~~~V~---~l~~s-p~g~~la~g~-d~~v~iw~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~  112 (415)
                      .|...|.   .+..+ |.+++|.+|+ ||.|++|+.......    +...++.|..++.++....++..+++++.|    
T Consensus        19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsD----   94 (735)
T KOG0308|consen   19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSD----   94 (735)
T ss_pred             hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCC----
Confidence            4555555   55555 4667799999 999999998643321    334466788889999999999999999988    


Q ss_pred             CCeEEEEECCCC--CEEEEEE-ccCceeEEEE-cCCeEEEE---eCCeEEEEEcCCc--eeeeEEec------c-CCCcc
Q 014977          113 PTKVIIWDDHQS--RCIGEFA-FRSDVRSVKL-SRDRIVVV---LEHKIYVYSFVDL--KLLHQIET------L-ANLRG  176 (415)
Q Consensus       113 ~~~i~vwd~~~~--~~~~~~~-~~~~i~~l~~-~~~~~~~~---~d~~i~iwd~~~~--~~~~~~~~------~-~~~~~  176 (415)
                       .+|++|+...+  -++.++. |...|.++++ .++..+++   .|+.|.+||+.++  +.+..+..      . .....
T Consensus        95 -tTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~s  173 (735)
T KOG0308|consen   95 -TTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDS  173 (735)
T ss_pred             -ceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccc
Confidence             99999998877  5666676 9999999999 77777777   7999999999876  33333211      1 22235


Q ss_pred             eEEEecCCCceEEEEeCCccCeEEEEEcC-CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEE
Q 014977          177 LCCLSHHSSTSVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEV  255 (415)
Q Consensus       177 ~~~~~~~~~~~~l~~~g~~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~  255 (415)
                      +.+++.++.+..++ +|+..+.+++|+.+ .+.+..+.+|...|..+..++||..+++++.||+ |++||+...+++.++
T Consensus       174 iYSLA~N~t~t~iv-sGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgt-IrlWdLgqQrCl~T~  251 (735)
T KOG0308|consen  174 IYSLAMNQTGTIIV-SGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGT-IRLWDLGQQRCLATY  251 (735)
T ss_pred             eeeeecCCcceEEE-ecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCce-EEeeeccccceeeeE
Confidence            67777777775555 58899999998865 4678889999999999999999999999999999 999999999999999


Q ss_pred             ecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977          256 RRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (415)
Q Consensus       256 ~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  294 (415)
                      ..  |...|+++.-+|+=.++++|+.||.|+.=|+++..
T Consensus       252 ~v--H~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~  288 (735)
T KOG0308|consen  252 IV--HKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPA  288 (735)
T ss_pred             Ee--ccCceEEEeeCCCcceEEecCCCCcEEecccCCch
Confidence            88  77789999999999999999999999999998864

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.91  E-value=2.7e-22  Score=168.12  Aligned_cols=290  Identities=13%  Similarity=0.187  Sum_probs=212.2

Q ss_pred             CCCccCCCCCCceEEEEEeC-CCCEEEEEe-CCcEEEEEccCCce------eE-------EEeccCCCeeEEEEeeeC-C
Q 014977           35 PQTAFSDVDEIELISVSWNQ-DYGCFAAGT-SCGFRIYNCEPFKE------TF-------RRDLKSGGFRIVEMLFRC-N   98 (415)
Q Consensus        35 ~~~~~~~~h~~~V~~l~~sp-~g~~la~g~-d~~v~iw~~~~~~~------~~-------~~~~~~~~~~~~~~~~~~-~   98 (415)
                      +.......|.+.|+++.+.+ .|+++++|. ||.|.|||++....      +.       +..-..|.-.|..+.|-| |
T Consensus        34 ~d~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~D  113 (397)
T KOG4283|consen   34 NDKDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPID  113 (397)
T ss_pred             CCcceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeec
Confidence            34455678999999999987 688999999 99999999975321      00       011134566777777777 5


Q ss_pred             eEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCC---eEEEE---eCCeEEEEEcCCceeeeEEeccC
Q 014977           99 ILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRD---RIVVV---LEHKIYVYSFVDLKLLHQIETLA  172 (415)
Q Consensus        99 ~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~---~~~~~---~d~~i~iwd~~~~~~~~~~~~~~  172 (415)
                      .-.+.+++.|     .+++|||..+-+....++.++.|.+-+++|-   .-+++   .+-.|++-|+..|...+.+.+|.
T Consensus       114 tGmFtssSFD-----htlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr  188 (397)
T KOG4283|consen  114 TGMFTSSSFD-----HTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHR  188 (397)
T ss_pred             Cceeeccccc-----ceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecccc
Confidence            5667777877     9999999999999999999999999999884   33444   68899999999999999999998


Q ss_pred             CCcceEEEecCCCceEEEEeCCccCeEEEEEcCCc--ceE--------------EEecCccceEEEEeCCCCCEEEEEeC
Q 014977          173 NLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN--MIK--------------LINAHDSHIACFTLTLDGLLLATAST  236 (415)
Q Consensus       173 ~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~--~~~--------------~~~~~~~~i~~l~~sp~g~~l~s~s~  236 (415)
                      .  .++++.|+|...+++++|+.||.|++|+.+..  +..              .-.+|.+.+..++|..+|.++++++.
T Consensus       189 ~--~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt  266 (397)
T KOG4283|consen  189 D--GVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT  266 (397)
T ss_pred             C--ceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC
Confidence            8  77888888888899999999999999997642  222              23467788999999999999999999


Q ss_pred             CCcEEEEEECCCCcEE-EEEecCCCcc---cEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCccccc
Q 014977          237 RGTLIRIFNTVDGTRL-QEVRRGVDRA---EIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTEL  312 (415)
Q Consensus       237 dg~~I~vwd~~~~~~~-~~~~~~~~~~---~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  312 (415)
                      |.. +++|+..+|+.. ..+-...|..   .-..+. +.+...++.--.++.+.++.+-++....               
T Consensus       267 d~r-~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir---------------  329 (397)
T KOG4283|consen  267 DDR-IRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVR---------------  329 (397)
T ss_pred             ccc-eEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEE---------------
Confidence            999 999999887532 1111100111   111122 3333444444455777777777665332               


Q ss_pred             ccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977          313 LNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~  389 (415)
                                                               ..+..-....++++.++ .+..++..||.++.|...+
T Consensus       330 -----------------------------------------~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p~l  366 (397)
T KOG4283|consen  330 -----------------------------------------RLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSPAL  366 (397)
T ss_pred             -----------------------------------------eeecccceeeEEeecCchhhhhccccCCccccccccc
Confidence                                                     11111124456788888 9999999999999997743

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=4.4e-22  Score=168.57  Aligned_cols=285  Identities=16%  Similarity=0.191  Sum_probs=202.2

Q ss_pred             CccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCcee----EEEeccCCCeeEEEEeeeCCeEE-EEecCCCCC
Q 014977           37 TAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKET----FRRDLKSGGFRIVEMLFRCNILA-LVGAGDNSQ  110 (415)
Q Consensus        37 ~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~  110 (415)
                      .....+|.+.|++++|+.||+.||+++ |+.|+||+++.+...    ++..++.  ...+.+.|.||-.. +++.-..  
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~--dhpT~V~FapDc~s~vv~~~~g--  154 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEY--DHPTRVVFAPDCKSVVVSVKRG--  154 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccC--CCceEEEECCCcceEEEEEccC--
Confidence            356789999999999999999999999 999999999864432    1222211  14456778887543 3333333  


Q ss_pred             CCCCeEEEEECCC---CCEEEE--------EE--ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCC
Q 014977          111 YPPTKVIIWDDHQ---SRCIGE--------FA--FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANL  174 (415)
Q Consensus       111 ~~~~~i~vwd~~~---~~~~~~--------~~--~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~  174 (415)
                         .++++|.+..   |.....        +.  |...+..+-...++.+++   .|..|.+|+++ |+.+..+......
T Consensus       155 ---~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~  230 (420)
T KOG2096|consen  155 ---NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSS  230 (420)
T ss_pred             ---CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccccc
Confidence               7899997533   221111        11  456677777778888887   69999999998 8888888766554


Q ss_pred             cceEEEecCCCceEEEEeCCccCeEEEEEcC----C-----cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEE
Q 014977          175 RGLCCLSHHSSTSVLACPGLQRGQVRIEHFG----L-----NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFN  245 (415)
Q Consensus       175 ~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~----~-----~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd  245 (415)
                      ..-.++  +|+|++++++| ..-.|++|..-    +     ..+..+++|...|..++|+++.+.+++.+.||. ++|||
T Consensus       231 n~~aav--SP~GRFia~~g-FTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~-wriwd  306 (420)
T KOG2096|consen  231 NYDAAV--SPDGRFIAVSG-FTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGK-WRIWD  306 (420)
T ss_pred             ccceee--CCCCcEEEEec-CCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCc-EEEee
Confidence            444444  55678998866 45678887642    2     346678999999999999999999999999999 99999


Q ss_pred             CCC----C---cEEEEEecCC--CcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCC
Q 014977          246 TVD----G---TRLQEVRRGV--DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHS  316 (415)
Q Consensus       246 ~~~----~---~~~~~~~~~~--~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (415)
                      +.-    +   +.+++.....  ..+....++++|+|+.||.+. ...+++|..++++...+..                
T Consensus       307 tdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e----------------  369 (420)
T KOG2096|consen  307 TDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELE----------------  369 (420)
T ss_pred             ccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHH----------------
Confidence            742    1   2233321111  122344899999999988765 4459999999987543111                


Q ss_pred             CCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCCCEEEEEEeCCcEEEEEEec
Q 014977          317 SSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dg~~~~~~~~~  389 (415)
                                                             ++..+....++|+++++.++.|.|-.++++.-.+
T Consensus       370 ---------------------------------------~~h~~~Is~is~~~~g~~~atcGdr~vrv~~ntp  403 (420)
T KOG2096|consen  370 ---------------------------------------DIHSTTISSISYSSDGKYIATCGDRYVRVIRNTP  403 (420)
T ss_pred             ---------------------------------------HhhcCceeeEEecCCCcEEeeecceeeeeecCCC
Confidence                                                   1223556678999999999999999988886444

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.91  E-value=2.4e-22  Score=186.38  Aligned_cols=285  Identities=12%  Similarity=0.162  Sum_probs=220.2

Q ss_pred             CCCCceEEEEEeCC-----------CCEEEEEe-CCcEEEEEccC--CceeEEEec------------------------
Q 014977           42 VDEIELISVSWNQD-----------YGCFAAGT-SCGFRIYNCEP--FKETFRRDL------------------------   83 (415)
Q Consensus        42 ~h~~~V~~l~~sp~-----------g~~la~g~-d~~v~iw~~~~--~~~~~~~~~------------------------   83 (415)
                      -|...|+.+.--|.           ...|++++ |++|++|+++.  ...++++.+                        
T Consensus       367 yHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~  446 (1080)
T KOG1408|consen  367 YHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAG  446 (1080)
T ss_pred             eccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCC
Confidence            36666666655441           12577777 99999999974  122221110                        


Q ss_pred             ---------cCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCC---eEEEE-
Q 014977           84 ---------KSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRD---RIVVV-  149 (415)
Q Consensus        84 ---------~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~---~~~~~-  149 (415)
                               -+...++.+++.+|++..|++|..-     |.++||++..-+....+. |...|.++.++..   .++++ 
T Consensus       447 ~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~-----GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLAS  521 (1080)
T KOG1408|consen  447 IFDKALVSTCDSRFGFRALAVSPDGQHLASGDRG-----GNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLAS  521 (1080)
T ss_pred             cccccchhhcCcccceEEEEECCCcceecccCcc-----CceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhh
Confidence                     1345568889999999999999987     999999999888877777 9999999999853   34555 


Q ss_pred             --eCCeEEEEEcC-CceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC-cceEEEec-----CccceE
Q 014977          150 --LEHKIYVYSFV-DLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINA-----HDSHIA  220 (415)
Q Consensus       150 --~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~-~~~~~~~~-----~~~~i~  220 (415)
                        .|.-|+|||.. ...+++++.+|...++.+.|+-++-+..+++ ++.|..|.+..... .....+..     ....++
T Consensus       522 asrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Mis-cGADksimFr~~qk~~~g~~f~r~t~t~~ktTlY  600 (1080)
T KOG1408|consen  522 ASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMIS-CGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLY  600 (1080)
T ss_pred             ccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEe-ccCchhhheehhccccCceeccccccccccceEE
Confidence              68999999984 4567888999999888888888776667766 45788887743332 11222222     246789


Q ss_pred             EEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCC-CcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCC
Q 014977          221 CFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGV-DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDS  299 (415)
Q Consensus       221 ~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~-~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~  299 (415)
                      .++..|..+++++++.|.. |+|||+.+|+..+.|++.. |.+....+...|.|.|||+...|.++.++|+.++++..+.
T Consensus       601 Dm~Vdp~~k~v~t~cQDrn-irif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m  679 (1080)
T KOG1408|consen  601 DMAVDPTSKLVVTVCQDRN-IRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQM  679 (1080)
T ss_pred             EeeeCCCcceEEEEecccc-eEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhh
Confidence            9999999999999999999 9999999999999998742 4467888999999999999999999999999999976432


Q ss_pred             CCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEe
Q 014977          300 SSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSM  378 (415)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~  378 (415)
                      ..|                                                        ...+.-+.|.++ ..|+.++.
T Consensus       680 ~GH--------------------------------------------------------sE~VTG~kF~nDCkHlISvsg  703 (1080)
T KOG1408|consen  680 TGH--------------------------------------------------------SEAVTGVKFLNDCKHLISVSG  703 (1080)
T ss_pred             cCc--------------------------------------------------------chheeeeeecccchhheeecC
Confidence            222                                                        134556789998 99999999


Q ss_pred             CCcEEEEEEec
Q 014977          379 DGSFYRCSFDP  389 (415)
Q Consensus       379 dg~~~~~~~~~  389 (415)
                      ||+|++|.++.
T Consensus       704 DgCIFvW~lp~  714 (1080)
T KOG1408|consen  704 DGCIFVWKLPL  714 (1080)
T ss_pred             CceEEEEECch
Confidence            99999999985

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=2.5e-22  Score=177.79  Aligned_cols=281  Identities=15%  Similarity=0.178  Sum_probs=211.6

Q ss_pred             ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeE-EEEecCCCCCCCCCe
Q 014977           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNIL-ALVGAGDNSQYPPTK  115 (415)
Q Consensus        38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~~~~~~  115 (415)
                      +......+.|+++.|+|...+|++++ |+.++||.++.........++-....+.+..|.|+|. .+++++..     ..
T Consensus       207 Na~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rr-----ky  281 (514)
T KOG2055|consen  207 NAAHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRR-----KY  281 (514)
T ss_pred             ccCCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccc-----eE
Confidence            44555678899999999999999999 9999999998644333333445667788888999987 77777765     88


Q ss_pred             EEEEECCCCCEEEEEE----ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceE
Q 014977          116 VIIWDDHQSRCIGEFA----FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSV  188 (415)
Q Consensus       116 i~vwd~~~~~~~~~~~----~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (415)
                      +..||+.+.+..+.-.    ....+....+++++.+++   ..|.|++....+++.+..++...   .+..+.++.+++.
T Consensus       282 ~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG---~v~~~~fsSdsk~  358 (514)
T KOG2055|consen  282 LYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEG---VVSDFTFSSDSKE  358 (514)
T ss_pred             EEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeecc---EEeeEEEecCCcE
Confidence            9999999887654433    245677888999999888   68999999999999998887654   4556666677777


Q ss_pred             EEEeCCccCeEEEEEcCCcce-EEEecCccce--EEEEeCCCCCEEEEEeCCCcEEEEEECCC------CcEEEEEecCC
Q 014977          189 LACPGLQRGQVRIEHFGLNMI-KLINAHDSHI--ACFTLTLDGLLLATASTRGTLIRIFNTVD------GTRLQEVRRGV  259 (415)
Q Consensus       189 l~~~g~~dg~v~i~~~~~~~~-~~~~~~~~~i--~~l~~sp~g~~l~s~s~dg~~I~vwd~~~------~~~~~~~~~~~  259 (415)
                      |+++| .+|.|.+|+.+...+ +.+. ..+.|  ++++.+++|.|||+|+..|. |.|||.++      .+++..+..  
T Consensus       359 l~~~~-~~GeV~v~nl~~~~~~~rf~-D~G~v~gts~~~S~ng~ylA~GS~~Gi-VNIYd~~s~~~s~~PkPik~~dN--  433 (514)
T KOG2055|consen  359 LLASG-GTGEVYVWNLRQNSCLHRFV-DDGSVHGTSLCISLNGSYLATGSDSGI-VNIYDGNSCFASTNPKPIKTVDN--  433 (514)
T ss_pred             EEEEc-CCceEEEEecCCcceEEEEe-ecCccceeeeeecCCCceEEeccCcce-EEEeccchhhccCCCCchhhhhh--
Confidence            77655 688999998876543 4443 33433  57788899999999999999 99999654      356666665  


Q ss_pred             CcccEEEEEeCCCCCEEEEEeC--CCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccc
Q 014977          260 DRAEIYSIALSPNVQWLAVASD--KGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSF  337 (415)
Q Consensus       260 ~~~~v~~l~~spdg~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (415)
                      -...|++|.|++|++.||.+|.  +..+++-.+.+-..-                                         
T Consensus       434 Ltt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVF-----------------------------------------  472 (514)
T KOG2055|consen  434 LTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVF-----------------------------------------  472 (514)
T ss_pred             hheeeeeeeeCcchhhhhhhhhccccceEEEeccceeee-----------------------------------------
Confidence            5568999999999999987765  557887776655421                                         


Q ss_pred             cccccCcccccccceEEEEeC---CCceEEEEecCC-CEEEEEEeCCcEEEEEE
Q 014977          338 MRGVLPKYFSSEWSFAQFHIP---EVTHFIAAFGSQ-NTVVIVSMDGSFYRCSF  387 (415)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~  387 (415)
                                     ..|..+   -+.+.+++|+|. +.+++|...|.+.+|.+
T Consensus       473 ---------------sNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL  511 (514)
T KOG2055|consen  473 ---------------SNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL  511 (514)
T ss_pred             ---------------ccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence                           111111   145678999998 77777777899999987

>PTZ00420 coronin; Provisional

Probab=99.91  E-value=2e-21  Score=186.48  Aligned_cols=219  Identities=10%  Similarity=0.100  Sum_probs=166.1

Q ss_pred             CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCC-eEEEEecCCCCCCCCCeEEEEECCCCC--------EEEEEE-cc
Q 014977           64 SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCN-ILALVGAGDNSQYPPTKVIIWDDHQSR--------CIGEFA-FR  133 (415)
Q Consensus        64 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~~~~~~i~vwd~~~~~--------~~~~~~-~~  133 (415)
                      .+.+++|+......  ...+.+|...|.++.|+|+ ..+|++++.|     +.|++||+.++.        ++..+. |.
T Consensus        53 ~gvI~L~~~~r~~~--v~~L~gH~~~V~~lafsP~~~~lLASgS~D-----gtIrIWDi~t~~~~~~~i~~p~~~L~gH~  125 (568)
T PTZ00420         53 IGAIRLENQMRKPP--VIKLKGHTSSILDLQFNPCFSEILASGSED-----LTIRVWEIPHNDESVKEIKDPQCILKGHK  125 (568)
T ss_pred             eeEEEeeecCCCce--EEEEcCCCCCEEEEEEcCCCCCEEEEEeCC-----CeEEEEECCCCCccccccccceEEeecCC
Confidence            67899999876433  2345588899999999996 7889999988     999999987642        233444 88


Q ss_pred             CceeEEEEcCCeEEE-E---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC-cc
Q 014977          134 SDVRSVKLSRDRIVV-V---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NM  208 (415)
Q Consensus       134 ~~i~~l~~~~~~~~~-~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~-~~  208 (415)
                      ..|.+++|+|++..+ +   .|+.|++||+++++.+..+.. ..  .+.++++++++.+|++ ++.|+.|+||+.+. ..
T Consensus       126 ~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~-~~--~V~SlswspdG~lLat-~s~D~~IrIwD~Rsg~~  201 (568)
T PTZ00420        126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINM-PK--KLSSLKWNIKGNLLSG-TCVGKHMHIIDPRKQEI  201 (568)
T ss_pred             CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEec-CC--cEEEEEECCCCCEEEE-EecCCEEEEEECCCCcE
Confidence            999999999987654 3   699999999999887766653 33  5677778888888876 55899999988765 55


Q ss_pred             eEEEecCccceEE-----EEeCCCCCEEEEEeCCC----cEEEEEECCC-CcEEEEEecCCCcccEEEEEeCCCCCEEEE
Q 014977          209 IKLINAHDSHIAC-----FTLTLDGLLLATASTRG----TLIRIFNTVD-GTRLQEVRRGVDRAEIYSIALSPNVQWLAV  278 (415)
Q Consensus       209 ~~~~~~~~~~i~~-----l~~sp~g~~l~s~s~dg----~~I~vwd~~~-~~~~~~~~~~~~~~~v~~l~~spdg~~l~s  278 (415)
                      +..+.+|.+.+..     ..|++++.+|++++.++    . |+|||++. ++++..+....+.+.+......++|.++++
T Consensus       202 i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~-VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ls  280 (568)
T PTZ00420        202 ASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMRE-MKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLI  280 (568)
T ss_pred             EEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccE-EEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEE
Confidence            6778889876543     33568989999888774    6 99999985 566666554323344444444567899999


Q ss_pred             EeCCCeEEEEEceecc
Q 014977          279 ASDKGTVHIFSLRVRV  294 (415)
Q Consensus       279 ~s~dg~i~vwd~~~~~  294 (415)
                      |+.|++|++|++..+.
T Consensus       281 GkGD~tIr~~e~~~~~  296 (568)
T PTZ00420        281 GKGDGNCRYYQHSLGS  296 (568)
T ss_pred             EECCCeEEEEEccCCc
Confidence            9999999999997653

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.6e-21  Score=186.00  Aligned_cols=242  Identities=12%  Similarity=0.158  Sum_probs=194.7

Q ss_pred             CCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEE
Q 014977           41 DVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIW  119 (415)
Q Consensus        41 ~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vw  119 (415)
                      -.|....+.|+|.|+|.+|.+++ ||.|++|+......... .+..+...+.++....+  .+++++.+     ++|.+|
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~-ti~~~g~~v~~ia~~s~--~f~~~s~~-----~tv~~y   81 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE-TIDISGELVSSIACYSN--HFLTGSEQ-----NTVLRY   81 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCc-hhhccCceeEEEeeccc--ceEEeecc-----ceEEEe
Confidence            47899999999999999999888 99999999865422111 12124455555544444  66677766     999999


Q ss_pred             ECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCc
Q 014977          120 DDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ  195 (415)
Q Consensus       120 d~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  195 (415)
                      ....++.-..+. +.-++++++++.+|.+++   .|-.|++.++.+......+.+|..  .+.++.++|++.+||+ .+.
T Consensus        82 ~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~a--pVl~l~~~p~~~fLAv-ss~  158 (933)
T KOG1274|consen   82 KFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDA--PVLQLSYDPKGNFLAV-SSC  158 (933)
T ss_pred             eCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCC--ceeeeeEcCCCCEEEE-Eec
Confidence            998887765554 788999999999999998   688899999999999999999988  5677788888889987 457


Q ss_pred             cCeEEEEEcCCcce-EEEec-------C-ccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEE
Q 014977          196 RGQVRIEHFGLNMI-KLINA-------H-DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYS  266 (415)
Q Consensus       196 dg~v~i~~~~~~~~-~~~~~-------~-~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~  266 (415)
                      ||.|++|+.+...+ ..+.+       - ...+..++|+|+|..|+....|+. |++|+..+++....+....+...+..
T Consensus       159 dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~-Vkvy~r~~we~~f~Lr~~~~ss~~~~  237 (933)
T KOG1274|consen  159 DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNT-VKVYSRKGWELQFKLRDKLSSSKFSD  237 (933)
T ss_pred             CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCe-EEEEccCCceeheeecccccccceEE
Confidence            99999999876432 22221       1 345678999999888888888999 99999999999999988766667999


Q ss_pred             EEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977          267 IALSPNVQWLAVASDKGTVHIFSLRVRV  294 (415)
Q Consensus       267 l~~spdg~~l~s~s~dg~i~vwd~~~~~  294 (415)
                      ++|+|.|+|||+++.||.|.|||+++-+
T Consensus       238 ~~wsPnG~YiAAs~~~g~I~vWnv~t~~  265 (933)
T KOG1274|consen  238 LQWSPNGKYIAASTLDGQILVWNVDTHE  265 (933)
T ss_pred             EEEcCCCcEEeeeccCCcEEEEecccch
Confidence            9999999999999999999999999844

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.91  E-value=1.4e-22  Score=180.92  Aligned_cols=243  Identities=12%  Similarity=0.111  Sum_probs=192.5

Q ss_pred             CCCCCceEEEEEeCCCCEEEEEeCCcEEEEEccCCce---eEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977           41 DVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKE---TFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (415)
Q Consensus        41 ~~h~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~  117 (415)
                      -.|.+-|.++.++...+++.+|+.|.|+|||+...+.   +...........+..+...+|+..|+.|+.-     .++.
T Consensus       416 L~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGea-----stls  490 (705)
T KOG0639|consen  416 LAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEA-----STLS  490 (705)
T ss_pred             hccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecccc-----ceee
Confidence            4588889999999999999999999999999964221   1222223566778888999999998888876     9999


Q ss_pred             EEECCCCCEEEEEE---ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEE
Q 014977          118 IWDDHQSRCIGEFA---FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC  191 (415)
Q Consensus       118 vwd~~~~~~~~~~~---~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  191 (415)
                      |||+..-......+   ......+++.+||.++.+   .||.|.|||+.+...+..|++|.....  ++..+++|..|. 
T Consensus       491 iWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGas--cIdis~dGtklW-  567 (705)
T KOG0639|consen  491 IWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS--CIDISKDGTKLW-  567 (705)
T ss_pred             eeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCce--eEEecCCCceee-
Confidence            99987665443333   245678899999998877   899999999999999999999998554  455555566665 


Q ss_pred             eCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCC
Q 014977          192 PGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSP  271 (415)
Q Consensus       192 ~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp  271 (415)
                      +|+-|.+|+.|+.+......-....+.|.++-.+|++.+|+.|-+++. +.|... ++...+.+..  |++.|.++.|.+
T Consensus       568 TGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~-vevlh~-skp~kyqlhl--heScVLSlKFa~  643 (705)
T KOG0639|consen  568 TGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSN-VEVLHT-SKPEKYQLHL--HESCVLSLKFAY  643 (705)
T ss_pred             cCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCc-EEEEec-CCccceeecc--cccEEEEEEecc
Confidence            488999999998775433222234678999999999999999999999 888876 3444445555  888999999999


Q ss_pred             CCCEEEEEeCCCeEEEEEceeccc
Q 014977          272 NVQWLAVASDKGTVHIFSLRVRVV  295 (415)
Q Consensus       272 dg~~l~s~s~dg~i~vwd~~~~~~  295 (415)
                      .|+++++.+.|+.+..|...-|..
T Consensus       644 cGkwfvStGkDnlLnawrtPyGas  667 (705)
T KOG0639|consen  644 CGKWFVSTGKDNLLNAWRTPYGAS  667 (705)
T ss_pred             cCceeeecCchhhhhhccCccccc
Confidence            999999999999999999877763

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=3.3e-21  Score=162.74  Aligned_cols=242  Identities=14%  Similarity=0.153  Sum_probs=183.4

Q ss_pred             CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEE
Q 014977           40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII  118 (415)
Q Consensus        40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~v  118 (415)
                      .....+.|.++.|+|.+..|++++ ||.+++|++.......  .+ .+...+.+++|.++...+.+ +-|     |.|+.
T Consensus         9 ~npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~--~~-~~~~plL~c~F~d~~~~~~G-~~d-----g~vr~   79 (323)
T KOG1036|consen    9 ENPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL--KF-KHGAPLLDCAFADESTIVTG-GLD-----GQVRR   79 (323)
T ss_pred             CCCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh--he-ecCCceeeeeccCCceEEEe-ccC-----ceEEE
Confidence            444577899999999999999888 9999999998764333  34 67888999999986666555 444     99999


Q ss_pred             EECCCCCEEEEEEccCceeEEEEcCCe-EEEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCc
Q 014977          119 WDDHQSRCIGEFAFRSDVRSVKLSRDR-IVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ  195 (415)
Q Consensus       119 wd~~~~~~~~~~~~~~~i~~l~~~~~~-~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  195 (415)
                      +|+.++.....-.|...|.+|.+.+.. .++.  .|++|++||.+.......+....   .+.++...++  .|++ |..
T Consensus        80 ~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k---kVy~~~v~g~--~LvV-g~~  153 (323)
T KOG1036|consen   80 YDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGK---KVYCMDVSGN--RLVV-GTS  153 (323)
T ss_pred             EEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCc---eEEEEeccCC--EEEE-eec
Confidence            999999988878899999999999754 4444  89999999998755554444333   5666766654  3443 567


Q ss_pred             cCeEEEEEcCCcceE-E--EecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC----cEEEEEecCCC-------c
Q 014977          196 RGQVRIEHFGLNMIK-L--INAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG----TRLQEVRRGVD-------R  261 (415)
Q Consensus       196 dg~v~i~~~~~~~~~-~--~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~----~~~~~~~~~~~-------~  261 (415)
                      +..|.+|+++.-... +  -..-+-.+.++++-|++.=.+.++-||. |.+=.+...    +....|+.|..       -
T Consensus       154 ~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGR-VavE~~d~s~~~~skkyaFkCHr~~~~~~~~~  232 (323)
T KOG1036|consen  154 DRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGR-VAVEYFDDSEEAQSKKYAFKCHRLSEKDTEII  232 (323)
T ss_pred             CceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecce-EEEEccCCchHHhhhceeEEeeecccCCceEE
Confidence            899999887753221 1  1233567889999998888999999999 887666554    33445554211       1


Q ss_pred             ccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCC
Q 014977          262 AEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGE  297 (415)
Q Consensus       262 ~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~  297 (415)
                      -+|++|+|+|-...||+|+.||.|.+||+.+.++..
T Consensus       233 yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~  268 (323)
T KOG1036|consen  233 YPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLK  268 (323)
T ss_pred             EEeceeEeccccceEEecCCCceEEEccCcchhhhh
Confidence            279999999999999999999999999999988653

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=5e-22  Score=168.14  Aligned_cols=286  Identities=12%  Similarity=0.149  Sum_probs=224.8

Q ss_pred             CccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCe
Q 014977           37 TAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK  115 (415)
Q Consensus        37 ~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~  115 (415)
                      .....+|++.|+.++.......+.+++ |.+.+||.++++..+....  +|...+.++.|++.+.++++++.|     ++
T Consensus       141 vre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~--GH~GSVNsikfh~s~~L~lTaSGD-----~t  213 (481)
T KOG0300|consen  141 VRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYT--GHTGSVNSIKFHNSGLLLLTASGD-----ET  213 (481)
T ss_pred             hhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeec--ccccceeeEEeccccceEEEccCC-----cc
Confidence            456789999999999988888888888 9999999999988776644  899999999999999999999887     88


Q ss_pred             EEEEE------CCC------------------------------C----CEEEEEE-ccCceeEEEEcCCeEEEE---eC
Q 014977          116 VIIWD------DHQ------------------------------S----RCIGEFA-FRSDVRSVKLSRDRIVVV---LE  151 (415)
Q Consensus       116 i~vwd------~~~------------------------------~----~~~~~~~-~~~~i~~l~~~~~~~~~~---~d  151 (415)
                      -.||.      +..                              +    .++..+. |...|.+..|...+..++   .|
T Consensus       214 aHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWD  293 (481)
T KOG0300|consen  214 AHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWD  293 (481)
T ss_pred             hHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecc
Confidence            88886      110                              0    1122333 667777778877777766   79


Q ss_pred             CeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC--cceEEEecCccceEEEEeCCCCC
Q 014977          152 HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL--NMIKLINAHDSHIACFTLTLDGL  229 (415)
Q Consensus       152 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~--~~~~~~~~~~~~i~~l~~sp~g~  229 (415)
                      .+..+||+++++.++.+.+|.....-++  .+|..++++ +.+.|.+.++|+.+.  ..+..|++|...|+++.|.-+. 
T Consensus       294 RTAnlwDVEtge~v~~LtGHd~ELtHcs--tHptQrLVv-TsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-  369 (481)
T KOG0300|consen  294 RTANLWDVETGEVVNILTGHDSELTHCS--THPTQRLVV-TSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-  369 (481)
T ss_pred             ccceeeeeccCceeccccCcchhccccc--cCCcceEEE-EeccCceeEeccchhhcceeeeecccccceeEEEEecCC-
Confidence            9999999999999999999988555444  445555554 578999999999875  4567899999999999998776 


Q ss_pred             EEEEEeCCCcEEEEEECCCC-cEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCc
Q 014977          230 LLATASTRGTLIRIFNTVDG-TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQ  308 (415)
Q Consensus       230 ~l~s~s~dg~~I~vwd~~~~-~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~  308 (415)
                      .+++|+.|.+ |+|||+++. .++.++.   ...+++.++.+..+..|+.--++..|++||+....-..           
T Consensus       370 ~vVSgSDDrT-vKvWdLrNMRsplATIR---tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaR-----------  434 (481)
T KOG0300|consen  370 RVVSGSDDRT-VKVWDLRNMRSPLATIR---TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLAR-----------  434 (481)
T ss_pred             ceeecCCCce-EEEeeeccccCcceeee---cCCccceeEeecCCceEEeccCCceEEEEecCCCcccc-----------
Confidence            4889999999 999999876 4677777   45689999999988899988888899999998765321           


Q ss_pred             ccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC---CEEEEEEeCCcEEEE
Q 014977          309 STELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ---NTVVIVSMDGSFYRC  385 (415)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~dg~~~~~  385 (415)
                                                       ||+.   .     -+-...-+++|+|..+   ..++++|-|-.+.-|
T Consensus       435 ---------------------------------lPrt---s-----RqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW  473 (481)
T KOG0300|consen  435 ---------------------------------LPRT---S-----RQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGW  473 (481)
T ss_pred             ---------------------------------CCcc---c-----ccccceeeeeeeccccCcccccccccccceeeee
Confidence                                             1211   0     0111234677899876   889999999999999


Q ss_pred             EEec
Q 014977          386 SFDP  389 (415)
Q Consensus       386 ~~~~  389 (415)
                      ++.-
T Consensus       474 ~in~  477 (481)
T KOG0300|consen  474 KINT  477 (481)
T ss_pred             Eecc
Confidence            8753

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=1.2e-22  Score=165.87  Aligned_cols=246  Identities=14%  Similarity=0.149  Sum_probs=190.3

Q ss_pred             ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCce-eEEEeccCCCeeEEEEeeeC--CeEEEEecCCCCCCCC
Q 014977           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE-TFRRDLKSGGFRIVEMLFRC--NILALVGAGDNSQYPP  113 (415)
Q Consensus        38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~d~~~~~  113 (415)
                      .....|++.|..+...--|++||+++ |+.|+|+...+... .+...|.+|...+..+.|..  -|.+|++++.|     
T Consensus         5 ~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYD-----   79 (299)
T KOG1332|consen    5 TIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYD-----   79 (299)
T ss_pred             ehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecC-----
Confidence            35678999999999999999999999 99999999987664 55566778999999888875  78999999998     


Q ss_pred             CeEEEEECCCCCEEEEEE---ccCceeEEEEcCCe--EEEE---eCCeEEEEEcCCc-e--eeeEEeccCCCcceEEEec
Q 014977          114 TKVIIWDDHQSRCIGEFA---FRSDVRSVKLSRDR--IVVV---LEHKIYVYSFVDL-K--LLHQIETLANLRGLCCLSH  182 (415)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~---~~~~i~~l~~~~~~--~~~~---~d~~i~iwd~~~~-~--~~~~~~~~~~~~~~~~~~~  182 (415)
                      +.|.||.-++++-.+...   |...|++++|.|.+  ..++   .||.|.|++.+.. .  .......|...+..++++|
T Consensus        80 gkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswap  159 (299)
T KOG1332|consen   80 GKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAP  159 (299)
T ss_pred             ceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecC
Confidence            999999988775444443   89999999999864  4444   7999999998643 1  1222345655455555555


Q ss_pred             CCC-c-----------eEEEEeCCccCeEEEEEcCC---cceEEEecCccceEEEEeCCCC----CEEEEEeCCCcEEEE
Q 014977          183 HSS-T-----------SVLACPGLQRGQVRIEHFGL---NMIKLINAHDSHIACFTLTLDG----LLLATASTRGTLIRI  243 (415)
Q Consensus       183 ~~~-~-----------~~l~~~g~~dg~v~i~~~~~---~~~~~~~~~~~~i~~l~~sp~g----~~l~s~s~dg~~I~v  243 (415)
                      ..- +           +.|++ |+.|..|+||..+.   .....+.+|...|+.++|.|.-    .+||+++.||+ +.|
T Consensus       160 a~~~g~~~~~~~~~~~krlvS-gGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~-viI  237 (299)
T KOG1332|consen  160 ASAPGSLVDQGPAAKVKRLVS-GGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGT-VII  237 (299)
T ss_pred             cCCCccccccCcccccceeec-cCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCc-EEE
Confidence            411 1           33554 77899999998887   5556689999999999999964    47999999999 999


Q ss_pred             EECCCC--cE-EEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEcee
Q 014977          244 FNTVDG--TR-LQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV  292 (415)
Q Consensus       244 wd~~~~--~~-~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~  292 (415)
                      |-....  .- ...+..  ....++.+.||..|..|++++.|+.|.+|.-..
T Consensus       238 wt~~~e~e~wk~tll~~--f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  238 WTKDEEYEPWKKTLLEE--FPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV  287 (299)
T ss_pred             EEecCccCccccccccc--CCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence            976521  11 112222  456899999999999999999999999998544

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.90  E-value=2.6e-22  Score=177.54  Aligned_cols=245  Identities=11%  Similarity=0.141  Sum_probs=184.5

Q ss_pred             cCCCCCCceEEEEEeCCCCEEE-EEe-CCcEEEEEccCCceeE--------EEeccCCCeeEEEEeeeCC-eEEEEecCC
Q 014977           39 FSDVDEIELISVSWNQDYGCFA-AGT-SCGFRIYNCEPFKETF--------RRDLKSGGFRIVEMLFRCN-ILALVGAGD  107 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~g~~la-~g~-d~~v~iw~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~-~~~l~s~~~  107 (415)
                      ..-.|.+.|+.+.+-|....++ +++ .+.+.|||........        ...+.+|......++|++. ...+++++.
T Consensus       119 ~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~  198 (422)
T KOG0264|consen  119 QKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSD  198 (422)
T ss_pred             EeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccC
Confidence            4467999999999999776555 555 8999999996432211        1133355555667888874 355677777


Q ss_pred             CCCCCCCeEEEEECCCCCE-------EEEEE-ccCceeEEEEcCCeEEEE----eCCeEEEEEcC--CceeeeEEeccCC
Q 014977          108 NSQYPPTKVIIWDDHQSRC-------IGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFV--DLKLLHQIETLAN  173 (415)
Q Consensus       108 d~~~~~~~i~vwd~~~~~~-------~~~~~-~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~--~~~~~~~~~~~~~  173 (415)
                      |     +.|++||+.....       ...+. |...|.+++|++....++    .|+.+.|||++  +.+..+....|..
T Consensus       199 d-----~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~  273 (422)
T KOG0264|consen  199 D-----HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSA  273 (422)
T ss_pred             C-----CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCC
Confidence            6     9999999765322       23334 899999999998654443    79999999999  5566667778888


Q ss_pred             CcceEEEecCCCceEEEEeCCccCeEEEEEcCC--cceEEEecCccceEEEEeCCCC-CEEEEEeCCCcEEEEEECCCC-
Q 014977          174 LRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL--NMIKLINAHDSHIACFTLTLDG-LLLATASTRGTLIRIFNTVDG-  249 (415)
Q Consensus       174 ~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~--~~~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~-  249 (415)
                      ++.+++|.+.  +.+++++|+.|++|.+|+++.  .++..+.+|...|..+.|+|+. ..||+++.|+. +.|||+..- 
T Consensus       274 ~vn~~~fnp~--~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~r-l~vWDls~ig  350 (422)
T KOG0264|consen  274 EVNCVAFNPF--NEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRR-LNVWDLSRIG  350 (422)
T ss_pred             ceeEEEeCCC--CCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCc-EEEEeccccc
Confidence            6665555554  455666799999999999875  6788899999999999999965 58999999999 999998642 


Q ss_pred             -------------cEEEEEecCCCcccEEEEEeCCCCCE-EEEEeCCCeEEEEEceec
Q 014977          250 -------------TRLQEVRRGVDRAEIYSIALSPNVQW-LAVASDKGTVHIFSLRVR  293 (415)
Q Consensus       250 -------------~~~~~~~~~~~~~~v~~l~~spdg~~-l~s~s~dg~i~vwd~~~~  293 (415)
                                   +++..-.+  |...|..+.|+|...+ |+++++|+.+.||+....
T Consensus       351 ~eq~~eda~dgppEllF~HgG--H~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~  406 (422)
T KOG0264|consen  351 EEQSPEDAEDGPPELLFIHGG--HTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN  406 (422)
T ss_pred             cccChhhhccCCcceeEEecC--cccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence                         12223233  8889999999998775 668999999999998743

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.90  E-value=3.3e-22  Score=179.17  Aligned_cols=206  Identities=16%  Similarity=0.191  Sum_probs=151.9

Q ss_pred             eccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCC----CEEEEEE--ccCceeEEEEcCCeEEEE---eCC
Q 014977           82 DLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQS----RCIGEFA--FRSDVRSVKLSRDRIVVV---LEH  152 (415)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~----~~~~~~~--~~~~i~~l~~~~~~~~~~---~d~  152 (415)
                      .+.+|...|.++.+.+.|..+++|+.|     ..|++||+...    +..+.+.  ....|+++.|++.+..++   ...
T Consensus       162 ~l~hgtk~Vsal~~Dp~GaR~~sGs~D-----y~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~a  236 (641)
T KOG0772|consen  162 QLKHGTKIVSALAVDPSGARFVSGSLD-----YTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSA  236 (641)
T ss_pred             eccCCceEEEEeeecCCCceeeecccc-----ceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCc
Confidence            455788889999999999999999998     99999997542    2223333  467899999999876655   567


Q ss_pred             eEEEEEcCCceeeeEE------------eccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCc--ceEEEe-----
Q 014977          153 KIYVYSFVDLKLLHQI------------ETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN--MIKLIN-----  213 (415)
Q Consensus       153 ~i~iwd~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~--~~~~~~-----  213 (415)
                      ..+|+|-...+.+...            ++|...+++.+|+|...+.+|  +++.||+++||+....  ..+.++     
T Consensus       237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~Fl--T~s~DgtlRiWdv~~~k~q~qVik~k~~~  314 (641)
T KOG0772|consen  237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFL--TCSYDGTLRIWDVNNTKSQLQVIKTKPAG  314 (641)
T ss_pred             ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceE--EecCCCcEEEEecCCchhheeEEeeccCC
Confidence            7899995443333222            244444445556665555444  5679999999997753  233333     


Q ss_pred             cCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCc--EEEEEecCCCcc--cEEEEEeCCCCCEEEEEeCCCeEEEEE
Q 014977          214 AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT--RLQEVRRGVDRA--EIYSIALSPNVQWLAVASDKGTVHIFS  289 (415)
Q Consensus       214 ~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~--~~~~~~~~~~~~--~v~~l~~spdg~~l~s~s~dg~i~vwd  289 (415)
                      +..-+++.++|+++|++||+|..||. |.+|+.....  +...++.. |..  .|++|.||+||++|++-+.|+++++||
T Consensus       315 g~Rv~~tsC~~nrdg~~iAagc~DGS-IQ~W~~~~~~v~p~~~vk~A-H~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWD  392 (641)
T KOG0772|consen  315 GKRVPVTSCAWNRDGKLIAAGCLDGS-IQIWDKGSRTVRPVMKVKDA-HLPGQDITSISFSYDGNYLLSRGFDDTLKVWD  392 (641)
T ss_pred             CcccCceeeecCCCcchhhhcccCCc-eeeeecCCcccccceEeeec-cCCCCceeEEEeccccchhhhccCCCceeeee
Confidence            23457889999999999999999999 9999975432  22233322 444  899999999999999999999999999


Q ss_pred             ceecccC
Q 014977          290 LRVRVVG  296 (415)
Q Consensus       290 ~~~~~~~  296 (415)
                      ++.-++.
T Consensus       393 Lrq~kkp  399 (641)
T KOG0772|consen  393 LRQFKKP  399 (641)
T ss_pred             ccccccc
Confidence            9987754

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=2.5e-20  Score=158.13  Aligned_cols=202  Identities=14%  Similarity=0.168  Sum_probs=159.9

Q ss_pred             ccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE-----eCCeEEE
Q 014977           83 LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-----LEHKIYV  156 (415)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~-----~d~~i~i  156 (415)
                      +......+.++.|+.+|..+++++.|     ..+++||..+++.++++. .+..+..++|......++     .|.+|+.
T Consensus        10 f~~~~~~i~sl~fs~~G~~litss~d-----Dsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIry   84 (311)
T KOG1446|consen   10 FRETNGKINSLDFSDDGLLLITSSED-----DSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRY   84 (311)
T ss_pred             cccCCCceeEEEecCCCCEEEEecCC-----CeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEE
Confidence            43456778999999999999998887     899999999999999998 566788888865544444     4889999


Q ss_pred             EEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCCEEEEEe
Q 014977          157 YSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATAS  235 (415)
Q Consensus       157 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s  235 (415)
                      .++.+.+.++.+.+|...+..++++|-.  ..+++ ++.|++|++|+.+. ++...+.....  ..++|+|+|-++|++.
T Consensus        85 Lsl~dNkylRYF~GH~~~V~sL~~sP~~--d~FlS-~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLifA~~~  159 (311)
T KOG1446|consen   85 LSLHDNKYLRYFPGHKKRVNSLSVSPKD--DTFLS-SSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLIFALAN  159 (311)
T ss_pred             EEeecCceEEEcCCCCceEEEEEecCCC--CeEEe-cccCCeEEeeEecCCCCceEEecCCC--cceeECCCCcEEEEec
Confidence            9999999999999999966555555544  45554 78999999999984 34444433333  4578999999999999


Q ss_pred             CCCcEEEEEECCCC--cEEEEEecC-CCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceeccc
Q 014977          236 TRGTLIRIFNTVDG--TRLQEVRRG-VDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV  295 (415)
Q Consensus       236 ~dg~~I~vwd~~~~--~~~~~~~~~-~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~  295 (415)
                      .... |++||++.-  .+..++.-. ......+.|.|||||++|+.++..+.+++.|--+|..
T Consensus       160 ~~~~-IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~  221 (311)
T KOG1446|consen  160 GSEL-IKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTV  221 (311)
T ss_pred             CCCe-EEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcE
Confidence            8887 999999864  344444432 2456899999999999999999999999999888874

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.90  E-value=1.7e-21  Score=161.29  Aligned_cols=224  Identities=13%  Similarity=0.158  Sum_probs=187.2

Q ss_pred             ccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEE
Q 014977           83 LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYS  158 (415)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd  158 (415)
                      +++|...+..+.|+.+|.+|.+++.|     ....||-..+|+.+.++. |.+.|.++.++.+...++   .|.++++||
T Consensus         6 l~GHERplTqiKyN~eGDLlFscaKD-----~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWD   80 (327)
T KOG0643|consen    6 LQGHERPLTQIKYNREGDLLFSCAKD-----STPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWD   80 (327)
T ss_pred             cccCccccceEEecCCCcEEEEecCC-----CCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEE
Confidence            45889999999999999999999998     999999989999999999 999999999999988888   799999999


Q ss_pred             cCCceeeeEEeccCCCcceEEEecCCCceEEEEeC----CccCeEEEEEcC--------CcceEEEecCccceEEEEeCC
Q 014977          159 FVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG----LQRGQVRIEHFG--------LNMIKLINAHDSHIACFTLTL  226 (415)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g----~~dg~v~i~~~~--------~~~~~~~~~~~~~i~~l~~sp  226 (415)
                      +++|+++..++... ++..+.|++  .+.+++++.    +..+.|.+++.+        ..+...+..+...++.+-|.|
T Consensus        81 v~tGk~la~~k~~~-~Vk~~~F~~--~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~  157 (327)
T KOG0643|consen   81 VETGKQLATWKTNS-PVKRVDFSF--GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGP  157 (327)
T ss_pred             cCCCcEEEEeecCC-eeEEEeecc--CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecc
Confidence            99999999987644 344455555  444554432    134566675544        245778888899999999999


Q ss_pred             CCCEEEEEeCCCcEEEEEECCCCcEEEEE-ecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCC
Q 014977          227 DGLLLATASTRGTLIRIFNTVDGTRLQEV-RRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLST  305 (415)
Q Consensus       227 ~g~~l~s~s~dg~~I~vwd~~~~~~~~~~-~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~  305 (415)
                      -+++|++|.+||. |.+||+++|+.+..- ..  |...|++|.+++|..++++++.|.+-++||+.+-+..++....   
T Consensus       158 l~~~ii~Ghe~G~-is~~da~~g~~~v~s~~~--h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te---  231 (327)
T KOG0643|consen  158 LGETIIAGHEDGS-ISIYDARTGKELVDSDEE--HSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTE---  231 (327)
T ss_pred             cCCEEEEecCCCc-EEEEEcccCceeeechhh--hccccccccccCCcceEEecccCccceeeeccceeeEEEeeec---
Confidence            9999999999999 999999998655433 44  7779999999999999999999999999999998887777776   


Q ss_pred             CCcccccccCCCCCccc
Q 014977          306 PSQSTELLNHSSSFDTL  322 (415)
Q Consensus       306 ~~~~~~~~~~~~~~~~~  322 (415)
                        ||+|.+.|++..+..
T Consensus       232 --~PvN~aaisP~~d~V  246 (327)
T KOG0643|consen  232 --RPVNTAAISPLLDHV  246 (327)
T ss_pred             --ccccceecccccceE
Confidence              889999998877743

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=2e-20  Score=151.31  Aligned_cols=245  Identities=12%  Similarity=0.147  Sum_probs=188.3

Q ss_pred             ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCcee---EEEeccCCCeeEEEEeeeC----CeEEEEecCCCC
Q 014977           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKET---FRRDLKSGGFRIVEMLFRC----NILALVGAGDNS  109 (415)
Q Consensus        38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~---~~~~~~~~~~~~~~~~~~~----~~~~l~s~~~d~  109 (415)
                      ....-|++.|+|.+|+|+|+++|+|+ |..|++..++.....   ....|.-|...+..++|..    .+.+|++++.. 
T Consensus        83 kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gag-  161 (350)
T KOG0641|consen   83 KRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAG-  161 (350)
T ss_pred             eeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCC-
Confidence            34567899999999999999999999 999998766432111   1122334666677777754    35777777662 


Q ss_pred             CCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccC--C---CcceEEE
Q 014977          110 QYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLA--N---LRGLCCL  180 (415)
Q Consensus       110 ~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~--~---~~~~~~~  180 (415)
                         |..|.+-|..+|+....+. |.+.|.++-- -++-+++   .|.+|++||++-..++.++....  .   ...+.++
T Consensus       162 ---dc~iy~tdc~~g~~~~a~sghtghilalys-wn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav  237 (350)
T KOG0641|consen  162 ---DCKIYITDCGRGQGFHALSGHTGHILALYS-WNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAV  237 (350)
T ss_pred             ---cceEEEeecCCCCcceeecCCcccEEEEEE-ecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEE
Confidence               4778888889999998888 8888887643 3344455   79999999998888887774322  1   1356677


Q ss_pred             ecCCCceEEEEeCCccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC---c-EEEEE
Q 014977          181 SHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG---T-RLQEV  255 (415)
Q Consensus       181 ~~~~~~~~l~~~g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~---~-~~~~~  255 (415)
                      +.+|.+++|++ |-.|....+++.++ +.++.+..|...|.++.|+|...|+++++.|.. |++-|+...   + ++..+
T Consensus       238 ~vdpsgrll~s-g~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~-ikltdlqgdla~el~~~vv  315 (350)
T KOG0641|consen  238 AVDPSGRLLAS-GHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMK-IKLTDLQGDLAHELPIMVV  315 (350)
T ss_pred             EECCCcceeee-ccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccce-EEEeecccchhhcCceEEE
Confidence            88888988876 88899999976654 678899999999999999999999999999999 999998532   1 22233


Q ss_pred             ecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEce
Q 014977          256 RRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR  291 (415)
Q Consensus       256 ~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~  291 (415)
                      ..  |...+..+.|+|..--+++.+.|.++.+|-+.
T Consensus       316 ~e--hkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  316 AE--HKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             Ee--ccCceEEEEecCccceeeeccCcceEEEeccC
Confidence            33  77888899999999889999999999999764

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.89  E-value=2.2e-22  Score=179.70  Aligned_cols=236  Identities=12%  Similarity=0.227  Sum_probs=206.1

Q ss_pred             CCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEE
Q 014977           42 VDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD  120 (415)
Q Consensus        42 ~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd  120 (415)
                      ....-|.++.+.|||+.|++|+ -.++.|||+..-...+...+......+.+++.++|.++..++..|     |.|.|||
T Consensus       463 ~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsd-----GnI~vwD  537 (705)
T KOG0639|consen  463 NRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSD-----GNIAVWD  537 (705)
T ss_pred             CcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccC-----CcEEEEE
Confidence            3467799999999999999999 889999999865555555555556677888899999888888777     9999999


Q ss_pred             CCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCcc
Q 014977          121 DHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR  196 (415)
Q Consensus       121 ~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  196 (415)
                      +.+...++.++ |...+.||.+++||..+-   .|++|+.||+++++.+....   ....++.+...|.+.++++ |-.+
T Consensus       538 Lhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd---F~SQIfSLg~cP~~dWlav-GMen  613 (705)
T KOG0639|consen  538 LHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD---FSSQIFSLGYCPTGDWLAV-GMEN  613 (705)
T ss_pred             cccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh---hhhhheecccCCCccceee-eccc
Confidence            99999999999 999999999999998887   79999999999987765443   3336788888899999987 8889


Q ss_pred             CeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEE
Q 014977          197 GQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWL  276 (415)
Q Consensus       197 g~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l  276 (415)
                      +.+.+-..++.....+.-|++-|.++.|.+.|+++++.+.|.. +..|.+.-|..+...+   ..+.|.++.+|-|.++|
T Consensus       614 s~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnl-LnawrtPyGasiFqsk---E~SsVlsCDIS~ddkyI  689 (705)
T KOG0639|consen  614 SNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNL-LNAWRTPYGASIFQSK---ESSSVLSCDISFDDKYI  689 (705)
T ss_pred             CcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhh-hhhccCccccceeecc---ccCcceeeeeccCceEE
Confidence            9999977778778888899999999999999999999999999 9999999999887776   46789999999999999


Q ss_pred             EEEeCCCeEEEEEc
Q 014977          277 AVASDKGTVHIFSL  290 (415)
Q Consensus       277 ~s~s~dg~i~vwd~  290 (415)
                      ++|+.|....||.+
T Consensus       690 VTGSGdkkATVYeV  703 (705)
T KOG0639|consen  690 VTGSGDKKATVYEV  703 (705)
T ss_pred             EecCCCcceEEEEE
Confidence            99999998888876

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.89  E-value=1.4e-22  Score=174.33  Aligned_cols=247  Identities=12%  Similarity=0.163  Sum_probs=193.0

Q ss_pred             ccCCCCCCceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977           38 AFSDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (415)
Q Consensus        38 ~~~~~h~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~  117 (415)
                      .....|.+.|..|++.. +..|.+|.|.+|+.|.++..  .. ..+ .+...+..+..+.....++++|       ..|.
T Consensus       103 ~~f~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~~--p~-~ti-lg~s~~~gIdh~~~~~~FaTcG-------e~i~  170 (433)
T KOG0268|consen  103 RTFKAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKIDGP--PL-HTI-LGKSVYLGIDHHRKNSVFATCG-------EQID  170 (433)
T ss_pred             heeecccCceeeEEecc-cceEEecCCcceeeeeccCC--cc-eee-eccccccccccccccccccccC-------ceee
Confidence            44678999999999988 55666666999999998752  11 122 3444555666666677788877       5799


Q ss_pred             EEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE----eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEe
Q 014977          118 IWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP  192 (415)
Q Consensus       118 vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  192 (415)
                      |||.....+++.+. ....|.++.|+|....++    .|+.|.+||+++..+++.+....   ....++|+|+. +..++
T Consensus       171 IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~m---RTN~IswnPea-fnF~~  246 (433)
T KOG0268|consen  171 IWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTM---RTNTICWNPEA-FNFVA  246 (433)
T ss_pred             ecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeec---cccceecCccc-cceee
Confidence            99999999999999 677899999999776655    79999999999998887765443   23455666644 44456


Q ss_pred             CCccCeEEEEEcCC--cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeC
Q 014977          193 GLQRGQVRIEHFGL--NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALS  270 (415)
Q Consensus       193 g~~dg~v~i~~~~~--~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~s  270 (415)
                      +++|..++.++.+.  .++....+|.+.|.++.|||.|+.+++|+.|.+ |+||.++.+.....+... ....|.++.||
T Consensus       247 a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDks-IRIf~~~~~~SRdiYhtk-RMq~V~~Vk~S  324 (433)
T KOG0268|consen  247 ANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKS-IRIFPVNHGHSRDIYHTK-RMQHVFCVKYS  324 (433)
T ss_pred             ccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccce-EEEeecCCCcchhhhhHh-hhheeeEEEEe
Confidence            88999999977654  667788899999999999999999999999999 999999877654333221 23469999999


Q ss_pred             CCCCEEEEEeCCCeEEEEEceecccCCCCCCC
Q 014977          271 PNVQWLAVASDKGTVHIFSLRVRVVGEDSSSS  302 (415)
Q Consensus       271 pdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~  302 (415)
                      .|.+++++||+|+.|++|.-...++...++.+
T Consensus       325 ~Dskyi~SGSdd~nvRlWka~Aseklgv~t~r  356 (433)
T KOG0268|consen  325 MDSKYIISGSDDGNVRLWKAKASEKLGVITPR  356 (433)
T ss_pred             ccccEEEecCCCcceeeeecchhhhcCCCChh
Confidence            99999999999999999998877765444433

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=1.9e-21  Score=164.16  Aligned_cols=252  Identities=15%  Similarity=0.192  Sum_probs=195.1

Q ss_pred             CCCCCCCCCcccccccccCCCCCccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEE
Q 014977           15 GPFGSPNAGASASASASFGHPQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEM   93 (415)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~   93 (415)
                      ++.-.-..|..+-+-.......+...-.|..++.+++|.++. .+++|+ ||.|+.+|+++.....   +..|...+.++
T Consensus        25 ~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~-~~~~G~~dg~vr~~Dln~~~~~~---igth~~~i~ci  100 (323)
T KOG1036|consen   25 SSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADES-TIVTGGLDGQVRRYDLNTGNEDQ---IGTHDEGIRCI  100 (323)
T ss_pred             CCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCc-eEEEeccCceEEEEEecCCccee---eccCCCceEEE
Confidence            333444457777777777777777788999999999999855 555666 9999999999866543   33788889999


Q ss_pred             eeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEeccC
Q 014977           94 LFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLA  172 (415)
Q Consensus        94 ~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~  172 (415)
                      .+.+....+++|+.|     +.|++||.+....+..+.....|.++....+..++. .+..+.+||+++.....+.....
T Consensus       101 ~~~~~~~~vIsgsWD-----~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~  175 (323)
T KOG1036|consen  101 EYSYEVGCVISGSWD-----KTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESS  175 (323)
T ss_pred             EeeccCCeEEEcccC-----ccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhcccc
Confidence            999877788888888     999999998876777777777999999998888886 89999999998766544332222


Q ss_pred             C--CcceEEEecCCCceEEEEeCCccCeEEEEEcC-C----cceEEEecCc---------cceEEEEeCCCCCEEEEEeC
Q 014977          173 N--LRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG-L----NMIKLINAHD---------SHIACFTLTLDGLLLATAST  236 (415)
Q Consensus       173 ~--~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~-~----~~~~~~~~~~---------~~i~~l~~sp~g~~l~s~s~  236 (415)
                      -  ....+++.|+..|  .++ ++-+|.|.+...+ .    .....++.|.         -+|++|+|+|-...||||+.
T Consensus       176 lkyqtR~v~~~pn~eG--y~~-sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGs  252 (323)
T KOG1036|consen  176 LKYQTRCVALVPNGEG--YVV-SSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGS  252 (323)
T ss_pred             ceeEEEEEEEecCCCc--eEE-EeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCC
Confidence            1  2244555554444  333 6789999993322 2    3344566664         37899999999889999999


Q ss_pred             CCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeC
Q 014977          237 RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASD  281 (415)
Q Consensus       237 dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~  281 (415)
                      ||. |.+||+.+.+.+..+..  ....|..++|+.||..||+++.
T Consensus       253 DG~-V~~Wd~~~rKrl~q~~~--~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  253 DGI-VNIWDLFNRKRLKQLAK--YETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             Cce-EEEccCcchhhhhhccC--CCCceEEEEeccCCCeEEEEec
Confidence            999 99999999999999887  6678999999999999999874

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.89  E-value=5.3e-21  Score=168.18  Aligned_cols=241  Identities=12%  Similarity=0.134  Sum_probs=198.5

Q ss_pred             CccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCe
Q 014977           37 TAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK  115 (415)
Q Consensus        37 ~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~  115 (415)
                      .....||...|+.+.|+|+...+++++ |-.|+||..........  ...|...+..+..++++.+++++++|     ++
T Consensus       254 l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~--~~~h~~~V~~ls~h~tgeYllsAs~d-----~~  326 (506)
T KOG0289|consen  254 LATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTS--SRPHEEPVTGLSLHPTGEYLLSASND-----GT  326 (506)
T ss_pred             hhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccc--cccccccceeeeeccCCcEEEEecCC-----ce
Confidence            345789999999999999999999999 99999999876443322  33788889999999999999999998     99


Q ss_pred             EEEEECCCCCEEEEEEcc---CceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEE
Q 014977          116 VIIWDDHQSRCIGEFAFR---SDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVL  189 (415)
Q Consensus       116 i~vwd~~~~~~~~~~~~~---~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  189 (415)
                      ..+.|+.++..+....+.   -.+++.+|+|||.+++   .|+.++|||+..+..+..|.+|..+  +.++++..+|.+|
T Consensus       327 w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~--vk~i~FsENGY~L  404 (506)
T KOG0289|consen  327 WAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGP--VKAISFSENGYWL  404 (506)
T ss_pred             EEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCc--eeEEEeccCceEE
Confidence            999999999998888764   4589999999999998   7999999999999999999998884  5566667778888


Q ss_pred             EEeCCccCeEEEEEcCC-cceEEEecC-ccceEEEEeCCCCCEEEEEeCCCcEEEEEECC--CCcEEEEEecCCCcccEE
Q 014977          190 ACPGLQRGQVRIEHFGL-NMIKLINAH-DSHIACFTLTLDGLLLATASTRGTLIRIFNTV--DGTRLQEVRRGVDRAEIY  265 (415)
Q Consensus       190 ~~~g~~dg~v~i~~~~~-~~~~~~~~~-~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~--~~~~~~~~~~~~~~~~v~  265 (415)
                      ++ +.+|+.|++|+++. +..+++... ...+.++.|.+.|.+|+.++.|=. |++++-.  ....+..+..  |.+..+
T Consensus       405 at-~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~-Vy~~~k~~k~W~~~~~~~~--~sg~st  480 (506)
T KOG0289|consen  405 AT-AADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQ-VYICKKKTKSWTEIKELAD--HSGLST  480 (506)
T ss_pred             EE-EecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeE-EEEEecccccceeeehhhh--cccccc
Confidence            87 56899999999876 334444432 347999999999999999988755 5555533  4456666665  677889


Q ss_pred             EEEeCCCCCEEEEEeCCCeEEEEEc
Q 014977          266 SIALSPNVQWLAVASDKGTVHIFSL  290 (415)
Q Consensus       266 ~l~~spdg~~l~s~s~dg~i~vwd~  290 (415)
                      .+.|....+++++++.|..++++.+
T Consensus       481 ~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  481 GVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             eeeecccceEEeeccchhheEEeec
Confidence            9999999999999999999988865

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=6.6e-22  Score=185.21  Aligned_cols=241  Identities=12%  Similarity=0.195  Sum_probs=186.1

Q ss_pred             CCCceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEE--Eec---cCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCeE
Q 014977           43 DEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFR--RDL---KSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKV  116 (415)
Q Consensus        43 h~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~--~~~---~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~i  116 (415)
                      -+....+|+.+++-..++.++...++||.+.+......  ..+   +.-...+.++.|.. ...++++++..     |.|
T Consensus        38 ~k~~~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~n-----G~i  112 (839)
T KOG0269|consen   38 LKAKANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTN-----GVI  112 (839)
T ss_pred             cccccceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCC-----CcE
Confidence            35678889999999999999988889998875432221  111   11223344566664 34677888877     999


Q ss_pred             EEEECCC---CCEEEEEE-ccCceeEEEEcCCeEEEE----eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceE
Q 014977          117 IIWDDHQ---SRCIGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSV  188 (415)
Q Consensus       117 ~vwd~~~---~~~~~~~~-~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (415)
                      .+||+..   .+.+..+. |...++.+.|++....++    .||.|++||++..+...++.+....+.-+.|++.+... 
T Consensus       113 ~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~-  191 (839)
T KOG0269|consen  113 SVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNK-  191 (839)
T ss_pred             EEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCce-
Confidence            9999877   45555565 999999999998765555    79999999999888888888777777778888887543 


Q ss_pred             EEEeCCccCeEEEEEcCC--cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCc--EEEEEecCCCcccE
Q 014977          189 LACPGLQRGQVRIEHFGL--NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT--RLQEVRRGVDRAEI  264 (415)
Q Consensus       189 l~~~g~~dg~v~i~~~~~--~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~--~~~~~~~~~~~~~v  264 (415)
                      ++ ++.+.|.+++|+++.  ++...+.+|.++|.++.|+|++.+||+|+.|+. |+|||+.+++  .+.++.   ...+|
T Consensus       192 F~-s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~-vkiWd~t~~~~~~~~tIn---Tiapv  266 (839)
T KOG0269|consen  192 FA-SIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKM-VKIWDMTDSRAKPKHTIN---TIAPV  266 (839)
T ss_pred             EE-EecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCcc-EEEEeccCCCccceeEEe---eccee
Confidence            33 477899999999876  567788999999999999999999999999999 9999997664  344444   35689


Q ss_pred             EEEEeCCCCCE-EEEEe--CCCeEEEEEceecc
Q 014977          265 YSIALSPNVQW-LAVAS--DKGTVHIFSLRVRV  294 (415)
Q Consensus       265 ~~l~~spdg~~-l~s~s--~dg~i~vwd~~~~~  294 (415)
                      ..+.|-|+.++ ||+++  .|-.|+|||++.+-
T Consensus       267 ~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY  299 (839)
T KOG0269|consen  267 GRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY  299 (839)
T ss_pred             eeeeeccCccchhhhhhccccceEEEEeecccc
Confidence            99999998764 55554  47789999998764

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=4.5e-21  Score=162.23  Aligned_cols=238  Identities=14%  Similarity=0.173  Sum_probs=178.4

Q ss_pred             eEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCC
Q 014977           47 LISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR  125 (415)
Q Consensus        47 V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~  125 (415)
                      ..|+.|++.|.+||+|. +|.|.|||+.+...  ...+..|...+.+++|++++..|++++.|     ..|.+||+..|.
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i--ar~lsaH~~pi~sl~WS~dgr~LltsS~D-----~si~lwDl~~gs   98 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRI--ARMLSAHVRPITSLCWSRDGRKLLTSSRD-----WSIKLWDLLKGS   98 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccch--hhhhhccccceeEEEecCCCCEeeeecCC-----ceeEEEeccCCC
Confidence            78999999999999999 99999999998663  23455888899999999999999999998     999999999999


Q ss_pred             EEEEEEccCceeEEEEcCCe--EEEE--eCCeEEEEEcCCceeeeEEeccC---CCcceEEEecCCCceEEEEeCCccCe
Q 014977          126 CIGEFAFRSDVRSVKLSRDR--IVVV--LEHKIYVYSFVDLKLLHQIETLA---NLRGLCCLSHHSSTSVLACPGLQRGQ  198 (415)
Q Consensus       126 ~~~~~~~~~~i~~l~~~~~~--~~~~--~d~~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~g~~dg~  198 (415)
                      +++.+.+..+|....|+|..  +.++  .+..-.+.++.+++.. .+....   -.....+..+++.|+++++ |...|.
T Consensus        99 ~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~dln~sas~~~fdr~g~yIit-GtsKGk  176 (405)
T KOG1273|consen   99 PLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDGDLNSSASHGVFDRRGKYIIT-GTSKGK  176 (405)
T ss_pred             ceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCccccccccccccccCCCCEEEE-ecCcce
Confidence            99999999999999999853  4444  4555556665542221 111111   1111122346778888876 888999


Q ss_pred             EEEEEc-CCcceEEEecCc-cceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC-------c--EEEEEecCCCcccEEEE
Q 014977          199 VRIEHF-GLNMIKLINAHD-SHIACFTLTLDGLLLATASTRGTLIRIFNTVDG-------T--RLQEVRRGVDRAEIYSI  267 (415)
Q Consensus       199 v~i~~~-~~~~~~~~~~~~-~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~-------~--~~~~~~~~~~~~~v~~l  267 (415)
                      +.+++. +.+++..++... ..|..+.++..|++|+.-+.|.. |+.|+++.-       +  +.+++..-.....-.++
T Consensus       177 llv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRv-IR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~c  255 (405)
T KOG1273|consen  177 LLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRV-IRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKC  255 (405)
T ss_pred             EEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCce-EEEEehhhhcccCccCCcChhHHHHHHHhhhhhhhe
Confidence            998554 446666666555 78899999999999999999999 999998621       1  11222222223345678


Q ss_pred             EeCCCCCEEEEEeCC-CeEEEEEceecc
Q 014977          268 ALSPNVQWLAVASDK-GTVHIFSLRVRV  294 (415)
Q Consensus       268 ~~spdg~~l~s~s~d-g~i~vwd~~~~~  294 (415)
                      +|+.+|.|++.++.. ..++||.-..|.
T Consensus       256 cfs~dgeYv~a~s~~aHaLYIWE~~~Gs  283 (405)
T KOG1273|consen  256 CFSGDGEYVCAGSARAHALYIWEKSIGS  283 (405)
T ss_pred             eecCCccEEEeccccceeEEEEecCCcc
Confidence            999999999887754 479999987776

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.88  E-value=1.8e-19  Score=164.32  Aligned_cols=226  Identities=12%  Similarity=0.085  Sum_probs=156.1

Q ss_pred             CEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEE-EecCCCCCCCCCeEEEEECCCCCEEEEEEccC
Q 014977           57 GCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILAL-VGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRS  134 (415)
Q Consensus        57 ~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~  134 (415)
                      ..+++++ |+.+++||+++.+......  . ...+..+.|++++..+ +++..+     +.|++||..+++.+..+....
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~--~-~~~~~~l~~~~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~~~   73 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFP--V-GQRPRGITLSKDGKLLYVCASDS-----DTIQVIDLATGEVIGTLPSGP   73 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEE--C-CCCCCceEECCCCCEEEEEECCC-----CeEEEEECCCCcEEEeccCCC
Confidence            4677777 9999999998766444332  2 2335568889987654 566655     899999999998887776445


Q ss_pred             ceeEEEEcCCeEEEE----eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceE
Q 014977          135 DVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIK  210 (415)
Q Consensus       135 ~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~  210 (415)
                      .+..+.++|++..++    .++.|++||+.+.+.+..+....   ....+.+++++.+++++......+.+|+.......
T Consensus        74 ~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~---~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~  150 (300)
T TIGR03866        74 DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGV---EPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIV  150 (300)
T ss_pred             CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCC---CcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEE
Confidence            567889999987654    47899999999888777665332   23445666777777764433334555665543322


Q ss_pred             EEecCccceEEEEeCCCCCEEEEE-eCCCcEEEEEECCCCcEEEEEecCC---C--cccEEEEEeCCCCCEEEE-EeCCC
Q 014977          211 LINAHDSHIACFTLTLDGLLLATA-STRGTLIRIFNTVDGTRLQEVRRGV---D--RAEIYSIALSPNVQWLAV-ASDKG  283 (415)
Q Consensus       211 ~~~~~~~~i~~l~~sp~g~~l~s~-s~dg~~I~vwd~~~~~~~~~~~~~~---~--~~~v~~l~~spdg~~l~s-~s~dg  283 (415)
                      ........+..++|+|+|++|+++ ..++. |++||+.+++.+..+....   +  ......++|+|+++++++ .+.++
T Consensus       151 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~-v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~  229 (300)
T TIGR03866       151 DNVLVDQRPRFAEFTADGKELWVSSEIGGT-VSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPAN  229 (300)
T ss_pred             EEEEcCCCccEEEECCCCCEEEEEcCCCCE-EEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCC
Confidence            222233455789999999988655 45888 9999999998777665310   1  112356889999998654 45567


Q ss_pred             eEEEEEceecc
Q 014977          284 TVHIFSLRVRV  294 (415)
Q Consensus       284 ~i~vwd~~~~~  294 (415)
                      .|.+||+++++
T Consensus       230 ~i~v~d~~~~~  240 (300)
T TIGR03866       230 RVAVVDAKTYE  240 (300)
T ss_pred             eEEEEECCCCc
Confidence            89999997765

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=7.8e-20  Score=169.15  Aligned_cols=241  Identities=14%  Similarity=0.188  Sum_probs=193.3

Q ss_pred             CCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccC-CCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEE
Q 014977           43 DEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKS-GGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD  120 (415)
Q Consensus        43 h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd  120 (415)
                      ...+|.++||+.+.+.||++. +|.|.||++... ......+++ ....+-.++|.+.+.++.++..      |.|.-||
T Consensus        24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~-w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~s------g~i~EwD   96 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN-WFLEPVIHGPEDRSIESLAWAEGGRLFSSGLS------GSITEWD   96 (691)
T ss_pred             eccceEEEEEeccCCceeeeccCCcEEEEccCCC-ceeeEEEecCCCCceeeEEEccCCeEEeecCC------ceEEEEe
Confidence            356799999999999999999 999999999873 333333434 3556777999977777766655      9999999


Q ss_pred             CCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCcc
Q 014977          121 DHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR  196 (415)
Q Consensus       121 ~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  196 (415)
                      +.+++.+..+. ..+.|.+++.+|.+..++   .||.++.++...++.............+.++++++++..++. |+.|
T Consensus        97 l~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~-Gs~D  175 (691)
T KOG2048|consen   97 LHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAG-GSID  175 (691)
T ss_pred             cccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEe-cccC
Confidence            99999999988 789999999999887776   688888888877776655443333347899999999987775 8999


Q ss_pred             CeEEEEEcCCcc-eEEEe-------c-CccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEE
Q 014977          197 GQVRIEHFGLNM-IKLIN-------A-HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSI  267 (415)
Q Consensus       197 g~v~i~~~~~~~-~~~~~-------~-~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l  267 (415)
                      |.|++|+..... +....       . ...-|+++.|-.++ .|++|...|. |.+||...+.+++.+..  |.+.|.+|
T Consensus       176 g~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~-V~FWd~~~gTLiqS~~~--h~adVl~L  251 (691)
T KOG2048|consen  176 GVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGT-VTFWDSIFGTLIQSHSC--HDADVLAL  251 (691)
T ss_pred             ceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCce-EEEEcccCcchhhhhhh--hhcceeEE
Confidence            999999876533 22111       1 23346777777666 5899999999 99999999999999888  88899999


Q ss_pred             EeCCCCCEEEEEeCCCeEEEEEceeccc
Q 014977          268 ALSPNVQWLAVASDKGTVHIFSLRVRVV  295 (415)
Q Consensus       268 ~~spdg~~l~s~s~dg~i~vwd~~~~~~  295 (415)
                      +.++++.++++++.|+.|..|...+++.
T Consensus       252 av~~~~d~vfsaGvd~~ii~~~~~~~~~  279 (691)
T KOG2048|consen  252 AVADNEDRVFSAGVDPKIIQYSLTTNKS  279 (691)
T ss_pred             EEcCCCCeEEEccCCCceEEEEecCCcc
Confidence            9999999999999999999888877753

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.88  E-value=3.6e-21  Score=162.49  Aligned_cols=208  Identities=14%  Similarity=0.228  Sum_probs=170.1

Q ss_pred             ccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCC------------C------CEEEEEE-ccCceeEEEEcC
Q 014977           83 LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ------------S------RCIGEFA-FRSDVRSVKLSR  143 (415)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~------------~------~~~~~~~-~~~~i~~l~~~~  143 (415)
                      +..|...+.+..|++||.++++|+.|     ..|++.|++.            +      -.++++- |...|+++.|+|
T Consensus       108 lt~HK~~cR~aafs~DG~lvATGsaD-----~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP  182 (430)
T KOG0640|consen  108 LTSHKSPCRAAAFSPDGSLVATGSAD-----ASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP  182 (430)
T ss_pred             EeecccceeeeeeCCCCcEEEccCCc-----ceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc
Confidence            34678888899999999999999998     9999999762            1      1344443 889999999999


Q ss_pred             CeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcc-eE---EEecCc
Q 014977          144 DRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNM-IK---LINAHD  216 (415)
Q Consensus       144 ~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~-~~---~~~~~~  216 (415)
                      ...+++   .|++|++||+......+.++.......+.+++++|.|.+|++ |..-.++++++.+... ..   .-..|.
T Consensus       183 re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllv-gTdHp~~rlYdv~T~QcfvsanPd~qht  261 (430)
T KOG0640|consen  183 RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLV-GTDHPTLRLYDVNTYQCFVSANPDDQHT  261 (430)
T ss_pred             hhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEE-ecCCCceeEEeccceeEeeecCcccccc
Confidence            998888   799999999965433333333333336778888888888886 7788899998776532 22   124688


Q ss_pred             cceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977          217 SHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       217 ~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                      +.|+++.+++.|++.++++.||. |+|||--+++++.++...+..+.|.+..|..+|++|++.+.|..+++|++.++...
T Consensus       262 ~ai~~V~Ys~t~~lYvTaSkDG~-IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l  340 (430)
T KOG0640|consen  262 GAITQVRYSSTGSLYVTASKDGA-IKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRML  340 (430)
T ss_pred             cceeEEEecCCccEEEEeccCCc-EEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceE
Confidence            99999999999999999999999 99999999999999887655668999999999999999999999999999999875


Q ss_pred             C
Q 014977          297 E  297 (415)
Q Consensus       297 ~  297 (415)
                      .
T Consensus       341 ~  341 (430)
T KOG0640|consen  341 K  341 (430)
T ss_pred             E
Confidence            4

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=3.4e-20  Score=156.48  Aligned_cols=243  Identities=17%  Similarity=0.249  Sum_probs=173.1

Q ss_pred             cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCce--eEEEeccCCCeeEEEEeeeC--CeEEEEecCCCCCCCC
Q 014977           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE--TFRRDLKSGGFRIVEMLFRC--NILALVGAGDNSQYPP  113 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~d~~~~~  113 (415)
                      ...+|.+-|+++.|.+.|+++|+|+ |++++|||.+....  ......+.|...+..+.|.+  =|..+++++.|     
T Consensus         8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~D-----   82 (361)
T KOG2445|consen    8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYD-----   82 (361)
T ss_pred             cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecC-----
Confidence            4678999999999999999999999 99999999753322  22333456777888877764  58999999998     


Q ss_pred             CeEEEEECCC------C-C--EEEEEE-ccCceeEEEEcCC--eEEEE---eCCeEEEEEcCCcee------eeEEe---
Q 014977          114 TKVIIWDDHQ------S-R--CIGEFA-FRSDVRSVKLSRD--RIVVV---LEHKIYVYSFVDLKL------LHQIE---  169 (415)
Q Consensus       114 ~~i~vwd~~~------~-~--~~~~~~-~~~~i~~l~~~~~--~~~~~---~d~~i~iwd~~~~~~------~~~~~---  169 (415)
                      +++.||.-..      + +  ...++. ....|+++.|.|.  |..++   .||.++||+..+.-.      .+.+.   
T Consensus        83 rtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~  162 (361)
T KOG2445|consen   83 RTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVI  162 (361)
T ss_pred             CceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhcc
Confidence            9999998311      1 1  122233 5789999999985  45555   799999999754322      22222   


Q ss_pred             --ccCCCcceEEEecCCC---ceEEEEeCCcc-----CeEEEEEcCC-----cceEEEecCccceEEEEeCCCC----CE
Q 014977          170 --TLANLRGLCCLSHHSS---TSVLACPGLQR-----GQVRIEHFGL-----NMIKLINAHDSHIACFTLTLDG----LL  230 (415)
Q Consensus       170 --~~~~~~~~~~~~~~~~---~~~l~~~g~~d-----g~v~i~~~~~-----~~~~~~~~~~~~i~~l~~sp~g----~~  230 (415)
                        ...+.....|++|++.   ..+||+ |+.+     +.++||....     ..+..+..|..+|+.|+|.|+-    .+
T Consensus       163 ~pp~~~~~~~~CvsWn~sr~~~p~iAv-gs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~  241 (361)
T KOG2445|consen  163 DPPGKNKQPCFCVSWNPSRMHEPLIAV-GSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHL  241 (361)
T ss_pred             CCcccccCcceEEeeccccccCceEEE-EcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceee
Confidence              0111123445555542   235554 6544     3677755433     2355577899999999999963    47


Q ss_pred             EEEEeCCCcEEEEEECCCC--------------------cEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEc
Q 014977          231 LATASTRGTLIRIFNTVDG--------------------TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSL  290 (415)
Q Consensus       231 l~s~s~dg~~I~vwd~~~~--------------------~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~  290 (415)
                      ||+++.||  |+||.++..                    +.+..+..  |.+.|+.+.|+-.|..|++.+.||.|++|..
T Consensus       242 lAvA~kDg--v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~--H~~~VWrv~wNmtGtiLsStGdDG~VRLWka  317 (361)
T KOG2445|consen  242 LAVATKDG--VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDD--HNGEVWRVRWNMTGTILSSTGDDGCVRLWKA  317 (361)
T ss_pred             EEEeecCc--EEEEEEeeccchhhhhcccCCCCccccceEEeeeccC--CCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence            99999998  999998631                    12333444  8889999999999999999999999999985


Q ss_pred             e
Q 014977          291 R  291 (415)
Q Consensus       291 ~  291 (415)
                      .
T Consensus       318 n  318 (361)
T KOG2445|consen  318 N  318 (361)
T ss_pred             h
Confidence            4

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.87  E-value=3.1e-20  Score=156.34  Aligned_cols=229  Identities=16%  Similarity=0.161  Sum_probs=176.9

Q ss_pred             CccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC--CeEEEEecCCCCCCCC
Q 014977           37 TAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC--NILALVGAGDNSQYPP  113 (415)
Q Consensus        37 ~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~d~~~~~  113 (415)
                      ......|.++|.+++|+.||..+++|+ |+.+++||+.+++. ....  .|...+..+.|-+  ....|++|+-|     
T Consensus        65 ~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~-~~v~--~Hd~pvkt~~wv~~~~~~cl~TGSWD-----  136 (347)
T KOG0647|consen   65 PKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV-SQVA--AHDAPVKTCHWVPGMNYQCLVTGSWD-----  136 (347)
T ss_pred             chhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe-eeee--ecccceeEEEEecCCCcceeEecccc-----
Confidence            355678999999999999999999999 99999999998744 3333  5666666666655  45699999998     


Q ss_pred             CeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE-eCCeEEEEEcCCceee-eEEecc-CCCcceEEEecCCCceEEE
Q 014977          114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLL-HQIETL-ANLRGLCCLSHHSSTSVLA  190 (415)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~l~  190 (415)
                      ++|+.||++...++.++.....++++..-..-..++ .++.|.+|+++.+... +.+... .-...++++..+.++.  +
T Consensus       137 KTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~--a  214 (347)
T KOG0647|consen  137 KTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGF--A  214 (347)
T ss_pred             cceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCce--E
Confidence            999999999999999999999999998877666666 8999999999664322 111111 1122455666666654  3


Q ss_pred             EeCCccCeEEEEEc-CC--cceEEEecCcc---------ceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecC
Q 014977          191 CPGLQRGQVRIEHF-GL--NMIKLINAHDS---------HIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRG  258 (415)
Q Consensus       191 ~~g~~dg~v~i~~~-~~--~~~~~~~~~~~---------~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~  258 (415)
                      . |+-+|.+.|... ..  +.-..++.|+.         .|++|+|+|.-..|++++.||+ +.+||-.....++..+. 
T Consensus       215 l-GsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGt-f~FWDkdar~kLk~s~~-  291 (347)
T KOG0647|consen  215 L-GSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGT-FSFWDKDARTKLKTSET-  291 (347)
T ss_pred             e-eeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCce-EEEecchhhhhhhccCc-
Confidence            3 778999998333 22  44556666652         4778999999889999999999 99999877777777766 


Q ss_pred             CCcccEEEEEeCCCCCEEEEE
Q 014977          259 VDRAEIYSIALSPNVQWLAVA  279 (415)
Q Consensus       259 ~~~~~v~~l~~spdg~~l~s~  279 (415)
                       +..+|++.+|+.+|.++|-+
T Consensus       292 -~~qpItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  292 -HPQPITCCSFNRNGSIFAYA  311 (347)
T ss_pred             -CCCccceeEecCCCCEEEEE
Confidence             88899999999999988755

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=1e-20  Score=167.70  Aligned_cols=241  Identities=19%  Similarity=0.221  Sum_probs=193.4

Q ss_pred             CCCceEEEEEeCCCC-EEEEEe-CCcEEEEEccCCceeEEEeccCCC-eeEEEEeeeCCeEEEEecCCCCCCCCCeEEEE
Q 014977           43 DEIELISVSWNQDYG-CFAAGT-SCGFRIYNCEPFKETFRRDLKSGG-FRIVEMLFRCNILALVGAGDNSQYPPTKVIIW  119 (415)
Q Consensus        43 h~~~V~~l~~sp~g~-~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vw  119 (415)
                      ...+|.++.|.|+|. .+++++ ...++.||+++.+......+.+.. ..+..+..++++.+++..+..     |.|.+.
T Consensus       256 ~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~-----G~I~lL  330 (514)
T KOG2055|consen  256 EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN-----GHIHLL  330 (514)
T ss_pred             ccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccC-----ceEEee
Confidence            356789999999999 777777 888999999875543332222222 234456678888888888887     999999


Q ss_pred             ECCCCCEEEEEEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCcc
Q 014977          120 DDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR  196 (415)
Q Consensus       120 d~~~~~~~~~~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  196 (415)
                      ...+++.+..++..+.|.+++|+.+++.++   .+|.|++||++...+++.+.... .+....++.+.++.++|+ |+..
T Consensus       331 hakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G-~v~gts~~~S~ng~ylA~-GS~~  408 (514)
T KOG2055|consen  331 HAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDG-SVHGTSLCISLNGSYLAT-GSDS  408 (514)
T ss_pred             hhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecC-ccceeeeeecCCCceEEe-ccCc
Confidence            999999999999999999999999988777   58999999999999998886543 345567777777788886 9999


Q ss_pred             CeEEEEEcCC-------cceEEEecCccceEEEEeCCCCCEEEEEeC--CCcEEEEEECCCCcEEEEEecCC-CcccEEE
Q 014977          197 GQVRIEHFGL-------NMIKLINAHDSHIACFTLTLDGLLLATAST--RGTLIRIFNTVDGTRLQEVRRGV-DRAEIYS  266 (415)
Q Consensus       197 g~v~i~~~~~-------~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~--dg~~I~vwd~~~~~~~~~~~~~~-~~~~v~~  266 (415)
                      |.|.||+.+.       +++..+..-...|+++.|+|++++||.+|.  +.. +++-.+.+......+.... .-+.|++
T Consensus       409 GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~kna-lrLVHvPS~TVFsNfP~~n~~vg~vtc  487 (514)
T KOG2055|consen  409 GIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNA-LRLVHVPSCTVFSNFPTSNTKVGHVTC  487 (514)
T ss_pred             ceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccc-eEEEeccceeeeccCCCCCCcccceEE
Confidence            9999987543       556666667789999999999999988775  456 9999988877766665421 2247999


Q ss_pred             EEeCCCCCEEEEEeCCCeEEEEEce
Q 014977          267 IALSPNVQWLAVASDKGTVHIFSLR  291 (415)
Q Consensus       267 l~~spdg~~l~s~s~dg~i~vwd~~  291 (415)
                      |+|+|.+.+||.|..+|.+.+|.+.
T Consensus       488 ~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  488 MAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             EEecCCCceEEeecCCCceeeEeec
Confidence            9999999999999999999999975

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.87  E-value=2.4e-18  Score=154.31  Aligned_cols=273  Identities=12%  Similarity=0.147  Sum_probs=209.4

Q ss_pred             CCCceEEEEEeCCCCEEE-EEeCCcEEEEEccCCceeEEEec--cCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEE
Q 014977           43 DEIELISVSWNQDYGCFA-AGTSCGFRIYNCEPFKETFRRDL--KSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIW  119 (415)
Q Consensus        43 h~~~V~~l~~sp~g~~la-~g~d~~v~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vw  119 (415)
                      ..+.|..+.|+|.+..|. +.+.+.+..|+.+......+..+  +.....+.++.|.+++..+.+.+.      |.|.||
T Consensus       199 sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~------G~i~Iw  272 (626)
T KOG2106|consen  199 SNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSG------GNILIW  272 (626)
T ss_pred             ccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCC------ceEEEE
Confidence            356688999999776555 55599999999987554433222  223478999999999987765443      999999


Q ss_pred             ECCCCCEEEEEE-ccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCcc
Q 014977          120 DDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR  196 (415)
Q Consensus       120 d~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  196 (415)
                      +..+.+..+... |.+.|.+++...+|.++.  .|..|..|| ..-+.++..+.+...-.+..+...... ++ . |...
T Consensus       273 ~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d-i~-v-GTtr  348 (626)
T KOG2106|consen  273 SKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD-IL-V-GTTR  348 (626)
T ss_pred             eCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCc-EE-E-eecc
Confidence            987777766655 999999999999999998  799999999 555555555555444455666665444 33 2 5455


Q ss_pred             CeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEE
Q 014977          197 GQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWL  276 (415)
Q Consensus       197 g~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l  276 (415)
                      +.|.-=...........+|......++.+|+..++++++.|+. +++|+  ..+++....   ...++.++.|+|.| .|
T Consensus       349 N~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~-v~lW~--~~k~~wt~~---~~d~~~~~~fhpsg-~v  421 (626)
T KOG2106|consen  349 NFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKH-VRLWN--DHKLEWTKI---IEDPAECADFHPSG-VV  421 (626)
T ss_pred             ceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcce-EEEcc--CCceeEEEE---ecCceeEeeccCcc-eE
Confidence            5565544455555666789999999999999999999999999 99999  555555544   34578999999999 99


Q ss_pred             EEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEE
Q 014977          277 AVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFH  356 (415)
Q Consensus       277 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (415)
                      |.|+..|...+.|.++..-                                                         .+++
T Consensus       422 a~Gt~~G~w~V~d~e~~~l---------------------------------------------------------v~~~  444 (626)
T KOG2106|consen  422 AVGTATGRWFVLDTETQDL---------------------------------------------------------VTIH  444 (626)
T ss_pred             EEeeccceEEEEeccccee---------------------------------------------------------EEEE
Confidence            9999999999999988542                                                         2555


Q ss_pred             eCCCceEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977          357 IPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       357 ~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~  389 (415)
                      ....+.+++.|+|+ ..+++++.|+.||+|.++.
T Consensus       445 ~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~  478 (626)
T KOG2106|consen  445 TDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSA  478 (626)
T ss_pred             ecCCceEEEEEcCCCCEEEEecCCCeEEEEEECC
Confidence            56678889999999 7788888899999999987

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=3.2e-21  Score=177.38  Aligned_cols=275  Identities=11%  Similarity=0.143  Sum_probs=220.2

Q ss_pred             ccccCCCCCCCCCCCCcccccccccCCCCCccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCC
Q 014977            8 SREILPPGPFGSPNAGASASASASFGHPQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSG   86 (415)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~   86 (415)
                      .|-+.+.|.=+....|+....+..+..+.......|.+.|+.+....+++.|++++ |-+|++|+...........+..|
T Consensus        37 ~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H  116 (735)
T KOG0308|consen   37 GRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTH  116 (735)
T ss_pred             CceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcc
Confidence            33344445556666776666666666666677889999999999999999999988 99999999987553444556789


Q ss_pred             CeeEEEEee-eCCeEEEEecCCCCCCCCCeEEEEECCCCC--EEEEEE----------ccCceeEEEEcCCeEEEE---e
Q 014977           87 GFRIVEMLF-RCNILALVGAGDNSQYPPTKVIIWDDHQSR--CIGEFA----------FRSDVRSVKLSRDRIVVV---L  150 (415)
Q Consensus        87 ~~~~~~~~~-~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~--~~~~~~----------~~~~i~~l~~~~~~~~~~---~  150 (415)
                      ...|.++++ ..+..++++|+-|     +.|.+||+.++.  .+..+.          +...|++++-++.+..++   .
T Consensus       117 ~DYVkcla~~ak~~~lvaSgGLD-----~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgt  191 (735)
T KOG0308|consen  117 KDYVKCLAYIAKNNELVASGGLD-----RKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGT  191 (735)
T ss_pred             cchheeeeecccCceeEEecCCC-----ccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCc
Confidence            999999999 7889999999998     999999999873  333221          457899999999998888   5


Q ss_pred             CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCC
Q 014977          151 EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGL  229 (415)
Q Consensus       151 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~  229 (415)
                      .+.+++||.++.+.+..+.+|..  .+.++..+++|..+++ ++.||+|++|++.. +++.++..|...++++..+|+-.
T Consensus       192 ek~lr~wDprt~~kimkLrGHTd--NVr~ll~~dDGt~~ls-~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~  268 (735)
T KOG0308|consen  192 EKDLRLWDPRTCKKIMKLRGHTD--NVRVLLVNDDGTRLLS-ASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFT  268 (735)
T ss_pred             ccceEEeccccccceeeeecccc--ceEEEEEcCCCCeEee-cCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcc
Confidence            78899999999999999999998  5555566667777765 77899999999875 67888999999999999999999


Q ss_pred             EEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceec
Q 014977          230 LLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR  293 (415)
Q Consensus       230 ~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~  293 (415)
                      .+++|+.||. |..=|+++......+..  ...+|..+..+...+-+-+++.|+.|+-|..+-.
T Consensus       269 ~vYsG~rd~~-i~~Tdl~n~~~~tlick--~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~  329 (735)
T KOG0308|consen  269 HVYSGGRDGN-IYRTDLRNPAKSTLICK--EDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPD  329 (735)
T ss_pred             eEEecCCCCc-EEecccCCchhheEeec--CCCchhhhhhccccCCceeeeccccceecCCccc
Confidence            9999999999 99999988543333333  4557888888865555677889999999987644

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=3e-19  Score=151.30  Aligned_cols=223  Identities=9%  Similarity=0.072  Sum_probs=163.6

Q ss_pred             EEEEEe-CCcEEEEEccCCc------eeE----EEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCE
Q 014977           58 CFAAGT-SCGFRIYNCEPFK------ETF----RRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRC  126 (415)
Q Consensus        58 ~la~g~-d~~v~iw~~~~~~------~~~----~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~  126 (415)
                      .|++|+ ...|.-++++...      +..    ...++.|...+.+++.  ++.++++|+.|     .+|+|||+.+...
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssD-----etI~IYDm~k~~q   75 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSD-----ETIHIYDMRKRKQ   75 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCC-----CcEEEEeccchhh
Confidence            356666 6666666664322      111    1223566666766654  57899999998     9999999999887


Q ss_pred             EEEEE-ccCceeEEEEcCCe---EEEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEE
Q 014977          127 IGEFA-FRSDVRSVKLSRDR---IVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVR  200 (415)
Q Consensus       127 ~~~~~-~~~~i~~l~~~~~~---~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~  200 (415)
                      +..+- |.+.|+++.|.+..   .++.  .||.|.+|+....+++..++.|...++.++++|+  +++.++. +.|+.++
T Consensus        76 lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS--~KLALsV-g~D~~lr  152 (362)
T KOG0294|consen   76 LGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPS--GKLALSV-GGDQVLR  152 (362)
T ss_pred             hcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCC--CceEEEE-cCCceee
Confidence            77766 99999999999876   3444  7999999999999999999999986555555554  5554444 4799999


Q ss_pred             EEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEe
Q 014977          201 IEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVAS  280 (415)
Q Consensus       201 i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s  280 (415)
                      +|++-.........-......+.|+|.|.+++.+..++  |-+|.+.+......+..   ...+.++.|. ++..|++|.
T Consensus       153 ~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~--i~i~q~d~A~v~~~i~~---~~r~l~~~~l-~~~~L~vG~  226 (362)
T KOG0294|consen  153 TWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNK--IDIYQLDNASVFREIEN---PKRILCATFL-DGSELLVGG  226 (362)
T ss_pred             eehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccE--EEEEecccHhHhhhhhc---cccceeeeec-CCceEEEec
Confidence            98865433333333333445599999999988888775  89999988777666653   3467778774 567889999


Q ss_pred             CCCeEEEEEceecccC
Q 014977          281 DKGTVHIFSLRVRVVG  296 (415)
Q Consensus       281 ~dg~i~vwd~~~~~~~  296 (415)
                      +|+.|.+||.+...+.
T Consensus       227 d~~~i~~~D~ds~~~~  242 (362)
T KOG0294|consen  227 DNEWISLKDTDSDTPL  242 (362)
T ss_pred             CCceEEEeccCCCccc
Confidence            9999999999886543

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.87  E-value=5e-19  Score=161.39  Aligned_cols=237  Identities=14%  Similarity=0.101  Sum_probs=171.1

Q ss_pred             CceEEEEEeCCCCEEE-EEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEE-EecCCCCCCCCCeEEEEEC
Q 014977           45 IELISVSWNQDYGCFA-AGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILAL-VGAGDNSQYPPTKVIIWDD  121 (415)
Q Consensus        45 ~~V~~l~~sp~g~~la-~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~~~~~~i~vwd~  121 (415)
                      ..+.+++|+|+++.++ ++. ++.|++||..+.+....  +..+ .....+.+++++..+ +++..+     +.|++||+
T Consensus        31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~--~~~~-~~~~~~~~~~~g~~l~~~~~~~-----~~l~~~d~  102 (300)
T TIGR03866        31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGT--LPSG-PDPELFALHPNGKILYIANEDD-----NLVTVIDI  102 (300)
T ss_pred             CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEe--ccCC-CCccEEEECCCCCEEEEEcCCC-----CeEEEEEC
Confidence            3467899999999774 555 89999999987654332  2222 224567788887654 455555     89999999


Q ss_pred             CCCCEEEEEEccCceeEEEEcCCeEEEE---eC-CeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccC
Q 014977          122 HQSRCIGEFAFRSDVRSVKLSRDRIVVV---LE-HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRG  197 (415)
Q Consensus       122 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~---~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg  197 (415)
                      .+++.+..+.....+.+++|+|++.+++   .+ ..+.+||..+++....+....   ....+.+++++..+++++..++
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~  179 (300)
T TIGR03866       103 ETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQ---RPRFAEFTADGKELWVSSEIGG  179 (300)
T ss_pred             CCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCC---CccEEEECCCCCEEEEEcCCCC
Confidence            9988888877666678999999998887   22 457788998887765543322   2234556667777766666789


Q ss_pred             eEEEEEcCCc-ceEEEecCc-------cceEEEEeCCCCCEEEEE-eCCCcEEEEEECCCCcEEEEEecCCCcccEEEEE
Q 014977          198 QVRIEHFGLN-MIKLINAHD-------SHIACFTLTLDGLLLATA-STRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIA  268 (415)
Q Consensus       198 ~v~i~~~~~~-~~~~~~~~~-------~~i~~l~~sp~g~~l~s~-s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~  268 (415)
                      .|++|+.... .+..+..+.       .....++|+|+|++++++ +.++. |.+||+++++.+..+.   +...+.+++
T Consensus       180 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~-i~v~d~~~~~~~~~~~---~~~~~~~~~  255 (300)
T TIGR03866       180 TVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANR-VAVVDAKTYEVLDYLL---VGQRVWQLA  255 (300)
T ss_pred             EEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCe-EEEEECCCCcEEEEEE---eCCCcceEE
Confidence            9999887653 334443221       123468899999986554 45667 9999999988876654   234688999


Q ss_pred             eCCCCCEEEEE-eCCCeEEEEEceecccC
Q 014977          269 LSPNVQWLAVA-SDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       269 ~spdg~~l~s~-s~dg~i~vwd~~~~~~~  296 (415)
                      |+|+|++|+++ ..+|.|++||+++++..
T Consensus       256 ~~~~g~~l~~~~~~~~~i~v~d~~~~~~~  284 (300)
T TIGR03866       256 FTPDEKYLLTTNGVSNDVSVIDVAALKVI  284 (300)
T ss_pred             ECCCCCEEEEEcCCCCeEEEEECCCCcEE
Confidence            99999999876 46899999999998864

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.87  E-value=9.3e-20  Score=154.86  Aligned_cols=243  Identities=14%  Similarity=0.177  Sum_probs=172.5

Q ss_pred             CCceEEEEEeCCCCEEEEEe-CCcEEEEEccCC------------ceeEEEeccCCCeeEEEEeee-------CCeEEEE
Q 014977           44 EIELISVSWNQDYGCFAAGT-SCGFRIYNCEPF------------KETFRRDLKSGGFRIVEMLFR-------CNILALV  103 (415)
Q Consensus        44 ~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~------------~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~  103 (415)
                      ..-...+.|+|||..|++-+ |+.+++|++...            .+...... ..+..+...+|-       |+..+++
T Consensus        49 ~nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~-~eg~tvydy~wYs~M~s~qP~t~l~a  127 (406)
T KOG2919|consen   49 LNFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRY-QEGETVYDYCWYSRMKSDQPSTNLFA  127 (406)
T ss_pred             hhhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEe-ccCCEEEEEEeeeccccCCCccceee
Confidence            34567889999999999998 999999998421            11111112 233445554443       5677788


Q ss_pred             ecCCCCCCCCCeEEEEECCCCCEEEEEE---cc---CceeEEEEcCCeEEEE--eCCeEEEEEc-CCceeeeEEec----
Q 014977          104 GAGDNSQYPPTKVIIWDDHQSRCIGEFA---FR---SDVRSVKLSRDRIVVV--LEHKIYVYSF-VDLKLLHQIET----  170 (415)
Q Consensus       104 s~~~d~~~~~~~i~vwd~~~~~~~~~~~---~~---~~i~~l~~~~~~~~~~--~d~~i~iwd~-~~~~~~~~~~~----  170 (415)
                      +.+.+     .-|++||.-+|+....+.   |.   ....+++|+|||..++  ....|++||+ +.|+....+..    
T Consensus       128 ~ssr~-----~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~  202 (406)
T KOG2919|consen  128 VSSRD-----QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKG  202 (406)
T ss_pred             ecccc-----CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcc
Confidence            87877     999999999999887775   43   3456899999998888  7899999999 55543322211    


Q ss_pred             cCCCc-ceEEEecCCCceEEEEeCCccCeEEEEEc-CCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCC
Q 014977          171 LANLR-GLCCLSHHSSTSVLACPGLQRGQVRIEHF-GLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVD  248 (415)
Q Consensus       171 ~~~~~-~~~~~~~~~~~~~l~~~g~~dg~v~i~~~-~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~  248 (415)
                      ..... -+.+++++|....+.+.|+....+-|+.. ...++..+-+|.+.|+.+.|.++|+.|.+|+.....|..||++.
T Consensus       203 k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~  282 (406)
T KOG2919|consen  203 KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRY  282 (406)
T ss_pred             cccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehh
Confidence            11111 33456666655533334778888888444 45677888899999999999999999999886433399999985


Q ss_pred             -CcEEEEEecCCCcc-cEEE--EEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977          249 -GTRLQEVRRGVDRA-EIYS--IALSPNVQWLAVASDKGTVHIFSLRVRV  294 (415)
Q Consensus       249 -~~~~~~~~~~~~~~-~v~~--l~~spdg~~l~s~s~dg~i~vwd~~~~~  294 (415)
                       +.++..+..  |.. .-..  +...|++++|++|+.||.|++||++...
T Consensus       283 ~~~pv~~L~r--hv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g  330 (406)
T KOG2919|consen  283 SRDPVYALER--HVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLG  330 (406)
T ss_pred             ccchhhhhhh--hccCccceEEEecCCCCceeeccCCCccEEEEecCCCC
Confidence             456666766  332 2233  4456899999999999999999999843

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.87  E-value=4e-20  Score=163.87  Aligned_cols=235  Identities=14%  Similarity=0.181  Sum_probs=181.4

Q ss_pred             CCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEE
Q 014977           41 DVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIW  119 (415)
Q Consensus        41 ~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vw  119 (415)
                      .+|...|.+++.++||++||+|. |..|.||+.++.+.+..  +.+|...|.+++|.....-+.+++.|     ..|++|
T Consensus       199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~--~~ghr~~V~~L~fr~gt~~lys~s~D-----rsvkvw  271 (479)
T KOG0299|consen  199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKV--FKGHRGAVSSLAFRKGTSELYSASAD-----RSVKVW  271 (479)
T ss_pred             ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhc--ccccccceeeeeeecCccceeeeecC-----CceEEE
Confidence            48999999999999999999999 99999999998776544  56899999999999888888888887     999999


Q ss_pred             ECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCc
Q 014977          120 DDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ  195 (415)
Q Consensus       120 d~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  195 (415)
                      ++.....+.++- |...|.+|....-++.+.   .|.++++|++..... ..+.++...+.+++|--+  . .++ +|+.
T Consensus       272 ~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesq-lifrg~~~sidcv~~In~--~-Hfv-sGSd  346 (479)
T KOG0299|consen  272 SIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQ-LIFRGGEGSIDCVAFIND--E-HFV-SGSD  346 (479)
T ss_pred             ehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccce-eeeeCCCCCeeeEEEecc--c-cee-eccC
Confidence            988877666654 999999999887777766   799999999954333 345666654555555433  3 344 5999


Q ss_pred             cCeEEEEEcCCc-ceEEEe-cC-----------ccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC----cEEEEEecC
Q 014977          196 RGQVRIEHFGLN-MIKLIN-AH-----------DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG----TRLQEVRRG  258 (415)
Q Consensus       196 dg~v~i~~~~~~-~~~~~~-~~-----------~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~----~~~~~~~~~  258 (415)
                      +|.|.+|....+ ++.+.. +|           ..+|++++..|...++|+|+.+|. |++|-+.++    .++..+.  
T Consensus       347 nG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~-vrLW~i~~g~r~i~~l~~ls--  423 (479)
T KOG0299|consen  347 NGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGC-VRLWKIEDGLRAINLLYSLS--  423 (479)
T ss_pred             CceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCc-eEEEEecCCccccceeeecc--
Confidence            999999987653 333322 22           238999999999999999999999 999999887    3444444  


Q ss_pred             CCcccEEEEEeCCCCCEEEEE-eCCCeEEEEEce
Q 014977          259 VDRAEIYSIALSPNVQWLAVA-SDKGTVHIFSLR  291 (415)
Q Consensus       259 ~~~~~v~~l~~spdg~~l~s~-s~dg~i~vwd~~  291 (415)
                       ..+-|++|+|+++|++|++| +....+--|-..
T Consensus       424 -~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~  456 (479)
T KOG0299|consen  424 -LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCL  456 (479)
T ss_pred             -cccEEEEEEEccCCCEEEEecccccccceeeEe
Confidence             56789999999999976665 334444444433

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=2.3e-20  Score=165.70  Aligned_cols=218  Identities=12%  Similarity=0.189  Sum_probs=177.7

Q ss_pred             CCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEEC
Q 014977           43 DEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD  121 (415)
Q Consensus        43 h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~  121 (415)
                      -.++|.+++-+|+|.+|+.|+ .+.+++|.+.++..+..  +..|-..+.++.|+.|+..+++++.|     |.|.+|.+
T Consensus        80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v--~~aHYQ~ITcL~fs~dgs~iiTgskD-----g~V~vW~l  152 (476)
T KOG0646|consen   80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNV--LSAHYQSITCLKFSDDGSHIITGSKD-----GAVLVWLL  152 (476)
T ss_pred             cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHH--HHhhccceeEEEEeCCCcEEEecCCC-----ccEEEEEE
Confidence            367799999999999999998 99999999999776554  34888899999999999999999998     99999985


Q ss_pred             C---------CCCEEEEEE-ccCceeEEEEcCCe---EEEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCc
Q 014977          122 H---------QSRCIGEFA-FRSDVRSVKLSRDR---IVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSST  186 (415)
Q Consensus       122 ~---------~~~~~~~~~-~~~~i~~l~~~~~~---~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (415)
                      .         +-+++..+. |.-+|+++.+.+.+   +++.  .|.++++||+..+..+..+....   .+.++..+|..
T Consensus       153 ~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~---si~av~lDpae  229 (476)
T KOG0646|consen  153 TDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPS---SIKAVALDPAE  229 (476)
T ss_pred             EeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCC---cceeEEEcccc
Confidence            2         235566666 89999999987653   3332  79999999999999887775433   55666666666


Q ss_pred             eEEEEeCCccCeEEEEEcCC-----------------cceEEEecCcc--ceEEEEeCCCCCEEEEEeCCCcEEEEEECC
Q 014977          187 SVLACPGLQRGQVRIEHFGL-----------------NMIKLINAHDS--HIACFTLTLDGLLLATASTRGTLIRIFNTV  247 (415)
Q Consensus       187 ~~l~~~g~~dg~v~i~~~~~-----------------~~~~~~~~~~~--~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~  247 (415)
                      ..+. .|..+|.|.+.+...                 ..+..+.+|.+  .|+|++++-||.+|++|+.||. |+|||+.
T Consensus       230 ~~~y-iGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~-VcvWdi~  307 (476)
T KOG0646|consen  230 RVVY-IGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGK-VCVWDIY  307 (476)
T ss_pred             cEEE-ecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCC-EEEEecc
Confidence            6654 488999998843321                 34566778987  9999999999999999999999 9999999


Q ss_pred             CCcEEEEEecCCCcccEEEEEeCCCCC
Q 014977          248 DGTRLQEVRRGVDRAEIYSIALSPNVQ  274 (415)
Q Consensus       248 ~~~~~~~~~~~~~~~~v~~l~~spdg~  274 (415)
                      +.++++++..  ..++|+.+.+.|-.+
T Consensus       308 S~Q~iRtl~~--~kgpVtnL~i~~~~~  332 (476)
T KOG0646|consen  308 SKQCIRTLQT--SKGPVTNLQINPLER  332 (476)
T ss_pred             hHHHHHHHhh--hccccceeEeecccc
Confidence            9999988875  567899999976443

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=1.8e-19  Score=152.77  Aligned_cols=202  Identities=16%  Similarity=0.255  Sum_probs=157.9

Q ss_pred             ccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCC-----CEEEEEEccCceeEEEEcCCeEEEE----eCCe
Q 014977           83 LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQS-----RCIGEFAFRSDVRSVKLSRDRIVVV----LEHK  153 (415)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~-----~~~~~~~~~~~i~~l~~~~~~~~~~----~d~~  153 (415)
                      +++|...+.+++|+.||..|+++..|     +.|++|+++.-     ++++.--.-+..+.+.|.||.+-++    ...+
T Consensus        82 LKgH~~~vt~~~FsSdGK~lat~~~D-----r~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~  156 (420)
T KOG2096|consen   82 LKGHKKEVTDVAFSSDGKKLATISGD-----RSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNK  156 (420)
T ss_pred             hhccCCceeeeEEcCCCceeEEEeCC-----ceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCE
Confidence            46899999999999999999999998     99999998753     2222222334678899999987666    6789


Q ss_pred             EEEEEcCC---ceeeeEE---e---c-cCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEecCccceEEEE
Q 014977          154 IYVYSFVD---LKLLHQI---E---T-LANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFT  223 (415)
Q Consensus       154 i~iwd~~~---~~~~~~~---~---~-~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~  223 (415)
                      +++|.+..   |.....+   .   . ....+.++.+-....+.+|++ ++.|..|.+|+..++.+..+......-+..+
T Consensus       157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~ims-as~dt~i~lw~lkGq~L~~idtnq~~n~~aa  235 (420)
T KOG2096|consen  157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMS-ASLDTKICLWDLKGQLLQSIDTNQSSNYDAA  235 (420)
T ss_pred             EEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEE-ecCCCcEEEEecCCceeeeecccccccccee
Confidence            99998732   2222111   0   0 112234555666667777765 7789999999999999999988888888999


Q ss_pred             eCCCCCEEEEEeCCCcEEEEEECC---CC-----cEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceec
Q 014977          224 LTLDGLLLATASTRGTLIRIFNTV---DG-----TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR  293 (415)
Q Consensus       224 ~sp~g~~l~s~s~dg~~I~vwd~~---~~-----~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~  293 (415)
                      .||+|++|++++..-. |+||.+-   .|     ..+..+++  |.+.|..++|+++.+.+++.+.||+++|||++-.
T Consensus       236 vSP~GRFia~~gFTpD-VkVwE~~f~kdG~fqev~rvf~LkG--H~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVr  310 (420)
T KOG2096|consen  236 VSPDGRFIAVSGFTPD-VKVWEPIFTKDGTFQEVKRVFSLKG--HQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVR  310 (420)
T ss_pred             eCCCCcEEEEecCCCC-ceEEEEEeccCcchhhhhhhheecc--chhheeeeeeCCCcceeEEEecCCcEEEeeccce
Confidence            9999999999998888 9999863   33     24456677  8999999999999999999999999999998754

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=5e-20  Score=163.58  Aligned_cols=235  Identities=10%  Similarity=0.108  Sum_probs=188.7

Q ss_pred             CEEEEEe--CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE-cc
Q 014977           57 GCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FR  133 (415)
Q Consensus        57 ~~la~g~--d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~  133 (415)
                      .+++++.  ...+.+|.+......... + --...+.++.-+++|.+++.+...     +.|++|.+.+|..+..+. |-
T Consensus        51 ~yllsaq~~rp~l~vw~i~k~~~~~q~-~-v~Pg~v~al~s~n~G~~l~ag~i~-----g~lYlWelssG~LL~v~~aHY  123 (476)
T KOG0646|consen   51 EYLLSAQLKRPLLHVWEILKKDQVVQY-I-VLPGPVHALASSNLGYFLLAGTIS-----GNLYLWELSSGILLNVLSAHY  123 (476)
T ss_pred             hheeeecccCccccccccCchhhhhhh-c-ccccceeeeecCCCceEEEeeccc-----CcEEEEEeccccHHHHHHhhc
Confidence            4677776  567899998764433321 1 345567888899999999998666     999999999999988887 99


Q ss_pred             CceeEEEEcCCeEEEE---eCCeEEEEEcC---------CceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEE
Q 014977          134 SDVRSVKLSRDRIVVV---LEHKIYVYSFV---------DLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI  201 (415)
Q Consensus       134 ~~i~~l~~~~~~~~~~---~d~~i~iwd~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i  201 (415)
                      ..|+++.|+.|+.+++   .||.|.+|.+.         +-++++.+..|.-++.-+.+.+.+-...+++ .+.|.++++
T Consensus       124 Q~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~T-aS~D~t~k~  202 (476)
T KOG0646|consen  124 QSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYT-ASEDRTIKL  202 (476)
T ss_pred             cceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEE-ecCCceEEE
Confidence            9999999999999998   79999999872         3466777888887777666776655556655 679999999


Q ss_pred             EEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCC----------------CcEEEEEecCCCcccEE
Q 014977          202 EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVD----------------GTRLQEVRRGVDRAEIY  265 (415)
Q Consensus       202 ~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~----------------~~~~~~~~~~~~~~~v~  265 (415)
                      |+.....+..--.....+.+++.+|-++.+++|+.+|. |.+.++..                +..+..+.++.....|+
T Consensus       203 wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~-I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~IT  281 (476)
T KOG0646|consen  203 WDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGK-IFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAIT  281 (476)
T ss_pred             EEeccceeeEEEecCCcceeEEEcccccEEEecCCcce-EEeeehhcCCcccccccccccccccceeeeeccccCCccee
Confidence            99988766555567889999999999999999999999 98877643                23455666743334999


Q ss_pred             EEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCC
Q 014977          266 SIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSS  300 (415)
Q Consensus       266 ~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~  300 (415)
                      +++.+-||.+|++|+.||.|.|||+.+.++.+++.
T Consensus       282 cLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~  316 (476)
T KOG0646|consen  282 CLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ  316 (476)
T ss_pred             EEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence            99999999999999999999999999998876554

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.86  E-value=1.3e-18  Score=155.87  Aligned_cols=228  Identities=15%  Similarity=0.197  Sum_probs=172.0

Q ss_pred             CCceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCC
Q 014977           44 EIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ  123 (415)
Q Consensus        44 ~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~  123 (415)
                      +..|.|++|.++|..+..-++|.|.||+..+...... .+ .|...+.+++...++.++. |+.|     ..|..||- .
T Consensus       246 kk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~-~~-aH~ggv~~L~~lr~GtllS-GgKD-----Rki~~Wd~-~  316 (626)
T KOG2106|consen  246 KKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQ-VH-AHDGGVFSLCMLRDGTLLS-GGKD-----RKIILWDD-N  316 (626)
T ss_pred             ceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeE-ee-ecCCceEEEEEecCccEee-cCcc-----ceEEeccc-c
Confidence            4789999999999865544499999999976444333 23 8889999999999999887 8887     99999982 1


Q ss_pred             CCEEE------------------------------------------EEEccCceeEEEEcCCeEEEE---eCCeEEEEE
Q 014977          124 SRCIG------------------------------------------EFAFRSDVRSVKLSRDRIVVV---LEHKIYVYS  158 (415)
Q Consensus       124 ~~~~~------------------------------------------~~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd  158 (415)
                      -+.++                                          .+.|......++.+|+...++   .|+.+++|+
T Consensus       317 y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~  396 (626)
T KOG2106|consen  317 YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN  396 (626)
T ss_pred             ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc
Confidence            11111                                          111445667777888766666   799999999


Q ss_pred             cCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCC
Q 014977          159 FVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRG  238 (415)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg  238 (415)
                        ..+++.......   ...+..++|.+ .+|. |...|...+.+...+.+..+.....++++++|+|+|.+||.|+.|+
T Consensus       397 --~~k~~wt~~~~d---~~~~~~fhpsg-~va~-Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~  469 (626)
T KOG2106|consen  397 --DHKLEWTKIIED---PAECADFHPSG-VVAV-GTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDN  469 (626)
T ss_pred             --CCceeEEEEecC---ceeEeeccCcc-eEEE-eeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCC
Confidence              445554443322   34566666677 5655 8888888886666666666666689999999999999999999999


Q ss_pred             cEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEE
Q 014977          239 TLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIF  288 (415)
Q Consensus       239 ~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vw  288 (415)
                      . |+||-+..........+..+.++|+.+.||+|+++|.+.+.|-.|..|
T Consensus       470 ~-iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW  518 (626)
T KOG2106|consen  470 H-IYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYW  518 (626)
T ss_pred             e-EEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEE
Confidence            9 999998765444333333345799999999999999999999999999

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.86  E-value=3.1e-19  Score=165.54  Aligned_cols=291  Identities=15%  Similarity=0.206  Sum_probs=206.1

Q ss_pred             ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEec-----cCCCeeEEEEeeeCCeEEEEecCCCCCC
Q 014977           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDL-----KSGGFRIVEMLFRCNILALVGAGDNSQY  111 (415)
Q Consensus        38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~s~~~d~~~  111 (415)
                      ....||++.|+++.|+|.+..|.+++ |.++.+|.-+...-+.....     .+...+.....|++++..+++.+..   
T Consensus       261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~---  337 (764)
T KOG1063|consen  261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRT---  337 (764)
T ss_pred             hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEeccc---
Confidence            44679999999999999998888888 99999999876432332221     2234457788999999888888877   


Q ss_pred             CCCeEEEEECCCC-CEEEE--EE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCcee-eeEE---eccCCCcceEEE
Q 014977          112 PPTKVIIWDDHQS-RCIGE--FA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKL-LHQI---ETLANLRGLCCL  180 (415)
Q Consensus       112 ~~~~i~vwd~~~~-~~~~~--~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~-~~~~---~~~~~~~~~~~~  180 (415)
                        |..++|..+.. .....  +. |-..|++++|+|.|.+++   .|.+-++|---..+. -+.+   +.|...  ..++
T Consensus       338 --Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyD--l~c~  413 (764)
T KOG1063|consen  338 --GGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYD--LTCL  413 (764)
T ss_pred             --CcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeeccccccccc--ceee
Confidence              99999983332 22222  22 889999999999999888   688888876431111 1112   223332  2333


Q ss_pred             ecCCCceEEEEeCCccCeEEEEEcCC------------------------------------------------------
Q 014977          181 SHHSSTSVLACPGLQRGQVRIEHFGL------------------------------------------------------  206 (415)
Q Consensus       181 ~~~~~~~~l~~~g~~dg~v~i~~~~~------------------------------------------------------  206 (415)
                      ++-+....++ +|.+...++++....                                                      
T Consensus       414 ~~vn~~~~FV-SgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~  492 (764)
T KOG1063|consen  414 SFVNEDLQFV-SGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETP  492 (764)
T ss_pred             ehccCCceee-ecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecc
Confidence            3332111222 344444444443211                                                      


Q ss_pred             -----------------------cceEEEecCccceEEEEeCCCCCEEEEEeCCCc----EEEEEECCCCcEEEEEecCC
Q 014977          207 -----------------------NMIKLINAHDSHIACFTLTLDGLLLATASTRGT----LIRIFNTVDGTRLQEVRRGV  259 (415)
Q Consensus       207 -----------------------~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~----~I~vwd~~~~~~~~~~~~~~  259 (415)
                                             ..++.+.+|...|++++.+|+|+++|+++....    .|++|+..+....+.+..  
T Consensus       493 ~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~--  570 (764)
T KOG1063|consen  493 LAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEG--  570 (764)
T ss_pred             cccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecc--
Confidence                                   123445689999999999999999999876432    499999999888888888  


Q ss_pred             CcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccc
Q 014977          260 DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMR  339 (415)
Q Consensus       260 ~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (415)
                      |.-.|+.|+|||||++|++++.|.++.+|........+                                          
T Consensus       571 HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e------------------------------------------  608 (764)
T KOG1063|consen  571 HSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDE------------------------------------------  608 (764)
T ss_pred             cceEEEEEEECCCCcEEEEeecCceEEeeeeecccchh------------------------------------------
Confidence            88899999999999999999999999999986554321                                          


Q ss_pred             cccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEecC
Q 014977          340 GVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDPV  390 (415)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~~  390 (415)
                                ..|+..+.+......|.|+|+ ..+++++.|-+|.+|.....
T Consensus       609 ----------~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  609 ----------FRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             ----------hhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence                      113445555556677999998 44778888999999988764

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.85  E-value=3.1e-20  Score=172.60  Aligned_cols=241  Identities=14%  Similarity=0.218  Sum_probs=189.2

Q ss_pred             CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC---CeEEEEecCCCCCCCCCe
Q 014977           40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC---NILALVGAGDNSQYPPTK  115 (415)
Q Consensus        40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~s~~~d~~~~~~~  115 (415)
                      .-+....|.+++.+|+|++||+|. -|.++||++...+.....  ..|...|.++.|+.   ...+|++++.|     ..
T Consensus       455 ~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~--eAHesEilcLeyS~p~~~~kLLASasrd-----Rl  527 (1080)
T KOG1408|consen  455 TCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFM--EAHESEILCLEYSFPVLTNKLLASASRD-----RL  527 (1080)
T ss_pred             hcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhhe--ecccceeEEEeecCchhhhHhhhhccCC-----ce
Confidence            345567799999999999999999 999999999876655543  47888899988875   35789999998     99


Q ss_pred             EEEEECCCC-CEEEEEE-ccCceeEEEEcCCe--EEEE---eCCeEEEEEcCC-ceeeeEEeccC---CCcceEEEecCC
Q 014977          116 VIIWDDHQS-RCIGEFA-FRSDVRSVKLSRDR--IVVV---LEHKIYVYSFVD-LKLLHQIETLA---NLRGLCCLSHHS  184 (415)
Q Consensus       116 i~vwd~~~~-~~~~~~~-~~~~i~~l~~~~~~--~~~~---~d~~i~iwd~~~-~~~~~~~~~~~---~~~~~~~~~~~~  184 (415)
                      |.|+|+... ..++++. |...|+++.|.-.|  ..++   .|..|. |+... ......+..+.   ...++..+..+|
T Consensus       528 IHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksim-Fr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp  606 (1080)
T KOG1408|consen  528 IHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIM-FRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP  606 (1080)
T ss_pred             EEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhh-eehhccccCceeccccccccccceEEEeeeCC
Confidence            999998665 4556666 89999999998765  3333   455554 33322 11111222221   122567788888


Q ss_pred             CceEEEEeCCccCeEEEEEc-CCcceEEEec---CccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCC
Q 014977          185 STSVLACPGLQRGQVRIEHF-GLNMIKLINA---HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVD  260 (415)
Q Consensus       185 ~~~~l~~~g~~dg~v~i~~~-~~~~~~~~~~---~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~  260 (415)
                      ..+++++ ++.|..|+|++. .++..+.|++   |++....+...|.|.|||+...|.+ +.++|..+|+++.+..+  |
T Consensus       607 ~~k~v~t-~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdkt-l~~~Df~sgEcvA~m~G--H  682 (1080)
T KOG1408|consen  607 TSKLVVT-VCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKT-LCFVDFVSGECVAQMTG--H  682 (1080)
T ss_pred             CcceEEE-EecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCc-eEEEEeccchhhhhhcC--c
Confidence            8888876 569999999665 4566777764   6677888999999999999999999 99999999999999988  8


Q ss_pred             cccEEEEEeCCCCCEEEEEeCCCeEEEEEcee
Q 014977          261 RAEIYSIALSPNVQWLAVASDKGTVHIFSLRV  292 (415)
Q Consensus       261 ~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~  292 (415)
                      ...|+.+.|.+|-++|++.+.||.|.||.+..
T Consensus       683 sE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  683 SEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             chheeeeeecccchhheeecCCceEEEEECch
Confidence            88999999999999999999999999999854

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.85  E-value=9.4e-20  Score=168.99  Aligned_cols=234  Identities=13%  Similarity=0.213  Sum_probs=191.3

Q ss_pred             CCCCCCceEE-EEEeC-CCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977           40 SDVDEIELIS-VSWNQ-DYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (415)
Q Consensus        40 ~~~h~~~V~~-l~~sp-~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i  116 (415)
                      ..+|.+.|.. ++|-+ ++-+|++|+ |..+.+|........+.  +.+|...|+++.-..++. +++++-|     .++
T Consensus        53 ~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~--LkgH~snVC~ls~~~~~~-~iSgSWD-----~Ta  124 (745)
T KOG0301|consen   53 FEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYT--LKGHKSNVCSLSIGEDGT-LISGSWD-----STA  124 (745)
T ss_pred             cccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhh--hhccccceeeeecCCcCc-eEecccc-----cce
Confidence            4557777776 77775 555688888 99999999987766554  558999999988777777 8899988     999


Q ss_pred             EEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeC
Q 014977          117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG  193 (415)
Q Consensus       117 ~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  193 (415)
                      ++|-  .+++...+. |...|.++..-|++.++.  .|.+|++|.  .++.++++.+|...+..  +..-+++.++  ++
T Consensus       125 kvW~--~~~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRg--L~vl~~~~fl--Sc  196 (745)
T KOG0301|consen  125 KVWR--IGELVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRG--LAVLDDSHFL--SC  196 (745)
T ss_pred             EEec--chhhhcccCCcchheeeeeecCCCcEEeccCcceeeecc--CCchhhhhccchhheee--eEEecCCCeE--ee
Confidence            9997  455555566 999999999999997776  799999998  47889999999985544  4444444454  36


Q ss_pred             CccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCC
Q 014977          194 LQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNV  273 (415)
Q Consensus       194 ~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg  273 (415)
                      +.||.|++|+.++..+..+.+|...+++++..+++..++++++|++ ++||+..  ++.+.+.-  ....|+++.+-++|
T Consensus       197 sNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrt-lriW~~~--e~~q~I~l--PttsiWsa~~L~Ng  271 (745)
T KOG0301|consen  197 SNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRT-LRIWKKD--ECVQVITL--PTTSIWSAKVLLNG  271 (745)
T ss_pred             cCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCce-EEEeecC--ceEEEEec--CccceEEEEEeeCC
Confidence            6999999999999999999999999999998888889999999999 9999864  77777773  23389999998888


Q ss_pred             CEEEEEeCCCeEEEEEceeccc
Q 014977          274 QWLAVASDKGTVHIFSLRVRVV  295 (415)
Q Consensus       274 ~~l~s~s~dg~i~vwd~~~~~~  295 (415)
                      . |++|+.||.|+||-.+....
T Consensus       272 D-Ivvg~SDG~VrVfT~~k~R~  292 (745)
T KOG0301|consen  272 D-IVVGGSDGRVRVFTVDKDRK  292 (745)
T ss_pred             C-EEEeccCceEEEEEeccccc
Confidence            7 66888999999999886554

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=2.1e-18  Score=159.75  Aligned_cols=145  Identities=15%  Similarity=0.169  Sum_probs=115.1

Q ss_pred             CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEE
Q 014977           40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII  118 (415)
Q Consensus        40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~v  118 (415)
                      .....+.|++++.+|.+..+++|+ ||.+..++..+....+...|.....++.++.|++++..+++|+.|     |.|++
T Consensus       106 ~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~D-----g~Iri  180 (691)
T KOG2048|consen  106 IDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSID-----GVIRI  180 (691)
T ss_pred             ecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccC-----ceEEE
Confidence            345678999999999999999998 887788888888888888887778999999999999999999998     99999


Q ss_pred             EECCCCCEEEEEE---------ccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCce
Q 014977          119 WDDHQSRCIGEFA---------FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS  187 (415)
Q Consensus       119 wd~~~~~~~~~~~---------~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (415)
                      ||..++..+....         ...-|.++.+-.++.++.  ..|+|.+||...+.+++.+..|..  .+.+++.++++.
T Consensus       181 wd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a--dVl~Lav~~~~d  258 (691)
T KOG2048|consen  181 WDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDA--DVLALAVADNED  258 (691)
T ss_pred             EEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhc--ceeEEEEcCCCC
Confidence            9999998777332         123577888888998888  679999999988888777776665  333444433333


Q ss_pred             EEEE
Q 014977          188 VLAC  191 (415)
Q Consensus       188 ~l~~  191 (415)
                      .+.+
T Consensus       259 ~vfs  262 (691)
T KOG2048|consen  259 RVFS  262 (691)
T ss_pred             eEEE
Confidence            3433

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.85  E-value=1.1e-18  Score=165.18  Aligned_cols=246  Identities=17%  Similarity=0.132  Sum_probs=183.3

Q ss_pred             ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeE-EEEecCCCCCCCCCe
Q 014977           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNIL-ALVGAGDNSQYPPTK  115 (415)
Q Consensus        38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~~~~~~  115 (415)
                      ....++...|+++.=+|--..+|+|. +|.|.|+++...+.+....  .....|.++.|..||. .++++...     |.
T Consensus       196 ~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk--~d~g~VtslSFrtDG~p~las~~~~-----G~  268 (910)
T KOG1539|consen  196 YTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFK--QDWGRVTSLSFRTDGNPLLASGRSN-----GD  268 (910)
T ss_pred             EEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEE--ccccceeEEEeccCCCeeEEeccCC-----ce
Confidence            34567789999999999999999999 9999999999877665533  3358899999998875 45555554     88


Q ss_pred             EEEEECCCCCEEEEEE--ccCc----------------------------------------------------------
Q 014977          116 VIIWDDHQSRCIGEFA--FRSD----------------------------------------------------------  135 (415)
Q Consensus       116 i~vwd~~~~~~~~~~~--~~~~----------------------------------------------------------  135 (415)
                      +.+||++..+.+..+.  |.+.                                                          
T Consensus       269 m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~  348 (910)
T KOG1539|consen  269 MAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGH  348 (910)
T ss_pred             EEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcE
Confidence            9999987655443332  2111                                                          


Q ss_pred             --------------------------------------------------------------------------------
Q 014977          136 --------------------------------------------------------------------------------  135 (415)
Q Consensus       136 --------------------------------------------------------------------------------  135 (415)
                                                                                                      
T Consensus       349 ~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~  428 (910)
T KOG1539|consen  349 FILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWN  428 (910)
T ss_pred             EEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEe
Confidence                                                                                            


Q ss_pred             ----------------------eeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEE---eccCCCcceEEEecCCCce
Q 014977          136 ----------------------VRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQI---ETLANLRGLCCLSHHSSTS  187 (415)
Q Consensus       136 ----------------------i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  187 (415)
                                            +++++.++-|++.+   ..|.|.+|++++|-....+   ..|..  .+..++.+.-++
T Consensus       429 ~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~--~V~gla~D~~n~  506 (910)
T KOG1539|consen  429 FRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKG--EVTGLAVDGTNR  506 (910)
T ss_pred             ccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccC--ceeEEEecCCCc
Confidence                                  22222222223222   3555666666555555554   23333  556677777777


Q ss_pred             EEEEeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEE
Q 014977          188 VLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSI  267 (415)
Q Consensus       188 ~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l  267 (415)
                      .+++ ++.+|.+++|+...+....--.-...+..+..+....+++.+..|-. |+++|+.+.+.++.|.+  |.+.|+++
T Consensus       507 ~~vs-a~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~-I~vvD~~t~kvvR~f~g--h~nritd~  582 (910)
T KOG1539|consen  507 LLVS-AGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFS-IRVVDVVTRKVVREFWG--HGNRITDM  582 (910)
T ss_pred             eEEE-ccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCcee-EEEEEchhhhhhHHhhc--cccceeee
Confidence            7776 56899999999988775444445667788888888888999999988 99999999999999999  88999999


Q ss_pred             EeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977          268 ALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       268 ~~spdg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                      +|||||+||++++.|++|++||+.++...
T Consensus       583 ~FS~DgrWlisasmD~tIr~wDlpt~~lI  611 (910)
T KOG1539|consen  583 TFSPDGRWLISASMDSTIRTWDLPTGTLI  611 (910)
T ss_pred             EeCCCCcEEEEeecCCcEEEEeccCccee
Confidence            99999999999999999999999998743

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=1.5e-21  Score=181.49  Aligned_cols=218  Identities=17%  Similarity=0.284  Sum_probs=183.6

Q ss_pred             EEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE-ccCc
Q 014977           58 CFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSD  135 (415)
Q Consensus        58 ~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~  135 (415)
                      +++.+. .-.+++|+....        ..|...+.++..-.....+++|+.|     ..+-+|.+..-..+..+. |..+
T Consensus         6 ~~m~~~~~t~Lr~~~~~~~--------~~hsaav~~lk~~~s~r~~~~Gg~~-----~k~~L~~i~kp~~i~S~~~hesp   72 (825)
T KOG0267|consen    6 FLMKTKRATKLRVWDTREF--------VAHSAAVGCLKIRKSSRSLVTGGED-----EKVNLWAIGKPNAITSLTGHESP   72 (825)
T ss_pred             ccceeeeeeccccccchhh--------hhhhhhhceeeeeccceeeccCCCc-----eeeccccccCCchhheeeccCCc
Confidence            344444 666778876532        1344444444445667888999887     888899987777776766 9999


Q ss_pred             eeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcC-CcceEE
Q 014977          136 VRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG-LNMIKL  211 (415)
Q Consensus       136 i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~-~~~~~~  211 (415)
                      |.++.|+++..+++   .+|+|++||++..+.++++.+|..  .++.+.++|-+.+.| .|+.|+.+++|+.+ ..+...
T Consensus        73 IeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~--~~~sv~f~P~~~~~a-~gStdtd~~iwD~Rk~Gc~~~  149 (825)
T KOG0267|consen   73 IESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLL--NITSVDFHPYGEFFA-SGSTDTDLKIWDIRKKGCSHT  149 (825)
T ss_pred             ceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhcccc--CcceeeeccceEEec-cccccccceehhhhccCceee
Confidence            99999999998888   799999999999999999998887  455566777777775 59999999999987 688999


Q ss_pred             EecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEce
Q 014977          212 INAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR  291 (415)
Q Consensus       212 ~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~  291 (415)
                      +.+|...+..+.|+|+|++++.+++|.. ++|||+..|+.+.+|..  |.+.+..+.|+|..-+++.|+.|+++++||++
T Consensus       150 ~~s~~~vv~~l~lsP~Gr~v~~g~ed~t-vki~d~~agk~~~ef~~--~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dle  226 (825)
T KOG0267|consen  150 YKSHTRVVDVLRLSPDGRWVASGGEDNT-VKIWDLTAGKLSKEFKS--HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLE  226 (825)
T ss_pred             ecCCcceeEEEeecCCCceeeccCCcce-eeeeccccccccccccc--ccccccccccCchhhhhccCCCCceeeeeccc
Confidence            9999999999999999999999999999 99999999999999998  88899999999999999999999999999999


Q ss_pred             ecc
Q 014977          292 VRV  294 (415)
Q Consensus       292 ~~~  294 (415)
                      +-+
T Consensus       227 tfe  229 (825)
T KOG0267|consen  227 TFE  229 (825)
T ss_pred             eeE
Confidence            654

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=6.5e-20  Score=150.07  Aligned_cols=249  Identities=13%  Similarity=0.159  Sum_probs=187.6

Q ss_pred             CCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCC---EEEEEE-ccCceeEEEEcC--CeEEEE---eCCeEE
Q 014977           85 SGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR---CIGEFA-FRSDVRSVKLSR--DRIVVV---LEHKIY  155 (415)
Q Consensus        85 ~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~---~~~~~~-~~~~i~~l~~~~--~~~~~~---~d~~i~  155 (415)
                      .|...|.+...+--+..|++++.|     +.|+|+.++.+.   .+.++. |.++|..++|..  -|.+++   .||+|.
T Consensus         9 ~H~D~IHda~lDyygkrlATcsSD-----~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVI   83 (299)
T KOG1332|consen    9 QHEDMIHDAQLDYYGKRLATCSSD-----GTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVI   83 (299)
T ss_pred             hhhhhhhHhhhhhhcceeeeecCC-----ccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEE
Confidence            455555555556668889999988     999999987653   556666 999999999976  688888   799999


Q ss_pred             EEEcCCce--eeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCc----ceEEEecCccceEEEEeCCC--
Q 014977          156 VYSFVDLK--LLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN----MIKLINAHDSHIACFTLTLD--  227 (415)
Q Consensus       156 iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~----~~~~~~~~~~~i~~l~~sp~--  227 (415)
                      ||.-++++  .......|...+..++++|+.-+..|++ ++.||.|.|...+..    ..+....|.-.+++++|.|-  
T Consensus        84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~Lac-asSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~  162 (299)
T KOG1332|consen   84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLAC-ASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASA  162 (299)
T ss_pred             EEecCCCchhhhhhhhhhcccceeecccccccceEEEE-eeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCC
Confidence            99987764  3344567788888899999988888887 678999999443332    34456789999999999985  


Q ss_pred             -C-----------CEEEEEeCCCcEEEEEECCCCc--EEEEEecCCCcccEEEEEeCCCC----CEEEEEeCCCeEEEEE
Q 014977          228 -G-----------LLLATASTRGTLIRIFNTVDGT--RLQEVRRGVDRAEIYSIALSPNV----QWLAVASDKGTVHIFS  289 (415)
Q Consensus       228 -g-----------~~l~s~s~dg~~I~vwd~~~~~--~~~~~~~~~~~~~v~~l~~spdg----~~l~s~s~dg~i~vwd  289 (415)
                       |           +.|++|+.|.. |+||+..+++  .-++|.+  |...|+.++|.|.-    .+||+++.||++.||-
T Consensus       163 ~g~~~~~~~~~~~krlvSgGcDn~-VkiW~~~~~~w~~e~~l~~--H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt  239 (299)
T KOG1332|consen  163 PGSLVDQGPAAKVKRLVSGGCDNL-VKIWKFDSDSWKLERTLEG--HKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWT  239 (299)
T ss_pred             CccccccCcccccceeeccCCccc-eeeeecCCcchhhhhhhhh--cchhhhhhhhccccCCCceeeEEecCCCcEEEEE
Confidence             4           56999999999 9999988763  3344666  88999999999964    4799999999999998


Q ss_pred             ceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecC
Q 014977          290 LRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGS  369 (415)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (415)
                      .+ .+...                                  +.     ...|-+             -......+.|+.
T Consensus       240 ~~-~e~e~----------------------------------wk-----~tll~~-------------f~~~~w~vSWS~  266 (299)
T KOG1332|consen  240 KD-EEYEP----------------------------------WK-----KTLLEE-------------FPDVVWRVSWSL  266 (299)
T ss_pred             ec-CccCc----------------------------------cc-----cccccc-------------CCcceEEEEEec
Confidence            87 22110                                  00     001111             124567788988


Q ss_pred             C-CEEEEEEeCCcEEEEEEecCCCCcEEE
Q 014977          370 Q-NTVVIVSMDGSFYRCSFDPVHGGEMLQ  397 (415)
Q Consensus       370 ~-~~i~~~~~dg~~~~~~~~~~~~~~~~~  397 (415)
                      . +.|.+++.|.+|.+|.-+.  .|+...
T Consensus       267 sGn~LaVs~GdNkvtlwke~~--~Gkw~~  293 (299)
T KOG1332|consen  267 SGNILAVSGGDNKVTLWKENV--DGKWEE  293 (299)
T ss_pred             cccEEEEecCCcEEEEEEeCC--CCcEEE
Confidence            7 8888888899999998766  344443

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=6.2e-21  Score=177.46  Aligned_cols=236  Identities=11%  Similarity=0.142  Sum_probs=201.6

Q ss_pred             CCCccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCC
Q 014977           35 PQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPP  113 (415)
Q Consensus        35 ~~~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~  113 (415)
                      ...+....|...|.++..-..++.+++|+ +..+.+|.+.....+..  +..|...|-++.|+....+++.|..+     
T Consensus        19 ~~~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S--~~~hespIeSl~f~~~E~Llaagsas-----   91 (825)
T KOG0267|consen   19 WDTREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITS--LTGHESPIESLTFDTSERLLAAGSAS-----   91 (825)
T ss_pred             ccchhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhhe--eeccCCcceeeecCcchhhhcccccC-----
Confidence            34456778999999999978889999999 88888999875444443  45889999999999999999999988     


Q ss_pred             CeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEE
Q 014977          114 TKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVL  189 (415)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  189 (415)
                      |+|++||+++++.++++. |...+..+.|+|-+.+.+   .|..+++||++...+.+.+.+|...+  -.+.+.|+|.++
T Consensus        92 gtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv--~~l~lsP~Gr~v  169 (825)
T KOG0267|consen   92 GTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVV--DVLRLSPDGRWV  169 (825)
T ss_pred             CceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCccee--EEEeecCCCcee
Confidence            999999999999999887 899999999999999997   79999999999888999998877644  445556677888


Q ss_pred             EEeCCccCeEEEEEcC-CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEE
Q 014977          190 ACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIA  268 (415)
Q Consensus       190 ~~~g~~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~  268 (415)
                      +. |.+|.+++||+.. ++....|..|...+.++.|+|..-++++|+.|++ +++||+++.+.+.....  ....|.+++
T Consensus       170 ~~-g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~t-v~f~dletfe~I~s~~~--~~~~v~~~~  245 (825)
T KOG0267|consen  170 AS-GGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRT-VRFWDLETFEVISSGKP--ETDGVRSLA  245 (825)
T ss_pred             ec-cCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCce-eeeeccceeEEeeccCC--ccCCceeee
Confidence            76 6689999998875 5667788999999999999999999999999999 99999998888877666  567899999


Q ss_pred             eCCCCCEEEEEeCCC
Q 014977          269 LSPNVQWLAVASDKG  283 (415)
Q Consensus       269 ~spdg~~l~s~s~dg  283 (415)
                      |+|+++.+++|-.+.
T Consensus       246 fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  246 FNPDGKIVLSGEQIS  260 (825)
T ss_pred             ecCCceeeecCchhh
Confidence            999999888876554

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.84  E-value=4.5e-19  Score=158.56  Aligned_cols=238  Identities=14%  Similarity=0.122  Sum_probs=181.8

Q ss_pred             eEEEEEeCCCCEEEEEe---CCcEEEEEccCC-ceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECC
Q 014977           47 LISVSWNQDYGCFAAGT---SCGFRIYNCEPF-KETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH  122 (415)
Q Consensus        47 V~~l~~sp~g~~la~g~---d~~v~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~  122 (415)
                      +.++.|+.... |++++   |..+++|.-... ..+..... .......|+.......++++++..     +.|+|||++
T Consensus        37 ~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k-~~gd~~~Cv~~~s~S~y~~sgG~~-----~~Vkiwdl~  109 (673)
T KOG4378|consen   37 DFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRK-LTGDNAFCVACASQSLYEISGGQS-----GCVKIWDLR  109 (673)
T ss_pred             ceeeeccccce-EEEeecCCceeEEEecccCCCCccceeec-cccchHHHHhhhhcceeeeccCcC-----ceeeehhhH
Confidence            99999998765 44443   888999976532 11111111 122233344444455888899887     999999999


Q ss_pred             CCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCe
Q 014977          123 QSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQ  198 (415)
Q Consensus       123 ~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~  198 (415)
                      ...+.+.++ |...|+++.++-...+++   ..|.|.|..+.++.....|..... ..+.-+.+++..++++.+.+.+|.
T Consensus       110 ~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sg-qsvRll~ys~skr~lL~~asd~G~  188 (673)
T KOG4378|consen  110 AKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSG-QSVRLLRYSPSKRFLLSIASDKGA  188 (673)
T ss_pred             HHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCC-CeEEEeecccccceeeEeeccCCe
Confidence            777777777 999999999999888888   678999999999888777765433 123345555555666667889999


Q ss_pred             EEEEEcCCcc--eEEEecCccceEEEEeCCCC-CEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCE
Q 014977          199 VRIEHFGLNM--IKLINAHDSHIACFTLTLDG-LLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQW  275 (415)
Q Consensus       199 v~i~~~~~~~--~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~  275 (415)
                      |.+|+.++..  ......|..+...|+|+|.. .+|++.+.|.. |.+||+...+....+.   ...+...++|+++|.+
T Consensus       189 VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkk-i~~yD~~s~~s~~~l~---y~~Plstvaf~~~G~~  264 (673)
T KOG4378|consen  189 VTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKK-INIYDIRSQASTDRLT---YSHPLSTVAFSECGTY  264 (673)
T ss_pred             EEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccce-EEEeecccccccceee---ecCCcceeeecCCceE
Confidence            9999998743  33457899999999999955 57889999999 9999998877776666   4558999999999999


Q ss_pred             EEEEeCCCeEEEEEceecccC
Q 014977          276 LAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       276 l~s~s~dg~i~vwd~~~~~~~  296 (415)
                      |+.|+..|.|..||++..+..
T Consensus       265 L~aG~s~G~~i~YD~R~~k~P  285 (673)
T KOG4378|consen  265 LCAGNSKGELIAYDMRSTKAP  285 (673)
T ss_pred             EEeecCCceEEEEecccCCCC
Confidence            999999999999999987744

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.84  E-value=8.8e-19  Score=155.34  Aligned_cols=202  Identities=11%  Similarity=0.128  Sum_probs=150.5

Q ss_pred             CCCeeEEEEeeeCCe-EEEEecCCCCCCCCCeEEEEECCCCCEE----------EEEE-ccCceeEEEEcCC--eEEEE-
Q 014977           85 SGGFRIVEMLFRCNI-LALVGAGDNSQYPPTKVIIWDDHQSRCI----------GEFA-FRSDVRSVKLSRD--RIVVV-  149 (415)
Q Consensus        85 ~~~~~~~~~~~~~~~-~~l~s~~~d~~~~~~~i~vwd~~~~~~~----------~~~~-~~~~i~~l~~~~~--~~~~~-  149 (415)
                      .|...|..+.+.|+. .++++....     +.|.|||..+....          ..+. |...-.++.|++.  +.++. 
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~-----~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~  196 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSS-----GDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSG  196 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCC-----CCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeec
Confidence            455566667777755 455555555     99999996543111          1233 7777788999875  45555 


Q ss_pred             -eCCeEEEEEcCCce-------eeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC---cceEEEecCccc
Q 014977          150 -LEHKIYVYSFVDLK-------LLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL---NMIKLINAHDSH  218 (415)
Q Consensus       150 -~d~~i~iwd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~---~~~~~~~~~~~~  218 (415)
                       .|++|.+||+....       ....+.+|...+.-++|++.... +++ +.+.|+.+.||+.+.   +......+|.+.
T Consensus       197 ~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~-sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~  274 (422)
T KOG0264|consen  197 SDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFG-SVGDDGKLMIWDTRSNTSKPSHSVKAHSAE  274 (422)
T ss_pred             cCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hhe-eecCCCeEEEEEcCCCCCCCcccccccCCc
Confidence             79999999995432       34456778876666666665443 333 456899999988773   456667899999


Q ss_pred             eEEEEeCCC-CCEEEEEeCCCcEEEEEECCCC-cEEEEEecCCCcccEEEEEeCCC-CCEEEEEeCCCeEEEEEceeccc
Q 014977          219 IACFTLTLD-GLLLATASTRGTLIRIFNTVDG-TRLQEVRRGVDRAEIYSIALSPN-VQWLAVASDKGTVHIFSLRVRVV  295 (415)
Q Consensus       219 i~~l~~sp~-g~~l~s~s~dg~~I~vwd~~~~-~~~~~~~~~~~~~~v~~l~~spd-g~~l~s~s~dg~i~vwd~~~~~~  295 (415)
                      +.+++|+|- +.+||+|+.|++ |++||+++. +++..+.+  |...|..+.|+|. ...||+++.|+.+.|||+..-..
T Consensus       275 vn~~~fnp~~~~ilAT~S~D~t-V~LwDlRnL~~~lh~~e~--H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~  351 (422)
T KOG0264|consen  275 VNCVAFNPFNEFILATGSADKT-VALWDLRNLNKPLHTFEG--HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGE  351 (422)
T ss_pred             eeEEEeCCCCCceEEeccCCCc-EEEeechhcccCceeccC--CCcceEEEEeCCCCCceeEecccCCcEEEEecccccc
Confidence            999999994 567899999999 999999876 46778888  8899999999995 45788999999999999987554


Q ss_pred             C
Q 014977          296 G  296 (415)
Q Consensus       296 ~  296 (415)
                      .
T Consensus       352 e  352 (422)
T KOG0264|consen  352 E  352 (422)
T ss_pred             c
Confidence            3

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.84  E-value=7e-19  Score=152.39  Aligned_cols=219  Identities=15%  Similarity=0.130  Sum_probs=158.6

Q ss_pred             cCCCCCCceEEEEEeCCCCEEEEE--e-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCe
Q 014977           39 FSDVDEIELISVSWNQDYGCFAAG--T-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK  115 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~g~~la~g--~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~  115 (415)
                      ...+|.+.++.+.-++-++-.+++  + .|.|+||++...-..+.    ...                            
T Consensus       146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~----~~~----------------------------  193 (440)
T KOG0302|consen  146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALS----EPG----------------------------  193 (440)
T ss_pred             cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhc----Ccc----------------------------
Confidence            456788888888888766433333  3 88999999875221111    000                            


Q ss_pred             EEEEECCCCCEEEEEE-ccCceeEEEEcC--CeEEEE--eCCeEEEEEcCCceee---eEEeccCCCcceEEEecCCCce
Q 014977          116 VIIWDDHQSRCIGEFA-FRSDVRSVKLSR--DRIVVV--LEHKIYVYSFVDLKLL---HQIETLANLRGLCCLSHHSSTS  187 (415)
Q Consensus       116 i~vwd~~~~~~~~~~~-~~~~i~~l~~~~--~~~~~~--~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  187 (415)
                      +.+-+ ...+++.++. |...=++|+|+|  .|.++.  --+.|++|...++.-.   ..+.+|...+.-+++++..+  
T Consensus       194 ~~~~~-s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~--  270 (440)
T KOG0302|consen  194 LEVKD-SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTED--  270 (440)
T ss_pred             ccccc-cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccC--
Confidence            00011 3445666666 778888999998  344444  3567999998776432   23455666555555555544  


Q ss_pred             EEEEeCCccCeEEEEEcCCc---ceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCC---CcEEEEEecCCCc
Q 014977          188 VLACPGLQRGQVRIEHFGLN---MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVD---GTRLQEVRRGVDR  261 (415)
Q Consensus       188 ~l~~~g~~dg~v~i~~~~~~---~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~---~~~~~~~~~~~~~  261 (415)
                      -++++|+.||+|+||+.+..   .....++|.+.|+.|.|+.+-.+||+|+.||. ++|||++.   ++++..|+.  |.
T Consensus       271 ~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt-~~iwDLR~~~~~~pVA~fk~--Hk  347 (440)
T KOG0302|consen  271 GVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGT-LSIWDLRQFKSGQPVATFKY--HK  347 (440)
T ss_pred             ceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCce-EEEEEhhhccCCCcceeEEe--cc
Confidence            35556889999999998875   34445899999999999998889999999999 99999974   568889988  89


Q ss_pred             ccEEEEEeCCC-CCEEEEEeCCCeEEEEEceeccc
Q 014977          262 AEIYSIALSPN-VQWLAVASDKGTVHIFSLRVRVV  295 (415)
Q Consensus       262 ~~v~~l~~spd-g~~l~s~s~dg~i~vwd~~~~~~  295 (415)
                      .+|+++.|+|. ...|++++.|.+|.|||+.....
T Consensus       348 ~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D  382 (440)
T KOG0302|consen  348 APITSIEWHPHEDSVIAASGEDNQITIWDLSVEAD  382 (440)
T ss_pred             CCeeEEEeccccCceEEeccCCCcEEEEEeeccCC
Confidence            99999999984 45788889999999999987654

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.84  E-value=8.9e-19  Score=160.02  Aligned_cols=251  Identities=16%  Similarity=0.137  Sum_probs=185.2

Q ss_pred             cccCCCCCccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCe--EEEEecC
Q 014977           30 ASFGHPQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNI--LALVGAG  106 (415)
Q Consensus        30 ~~~~~~~~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~s~~  106 (415)
                      .+|+........+|++.|.+|+..|.|.+||+|+ ||+|+||.+.++.++....+ .  ..|.+++|+|..  .+|+.+-
T Consensus       386 rPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d--~~I~~vaw~P~~~~~vLAvA~  462 (733)
T KOG0650|consen  386 RPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-D--SEIRSVAWNPLSDLCVLAVAV  462 (733)
T ss_pred             CCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-c--ceeEEEEecCCCCceeEEEEe
Confidence            4444445556789999999999999999999999 99999999999888777665 2  256667777642  3333222


Q ss_pred             CC---------------------------CCCCCCeEEEEECCC---C--CEEEEEEccCceeEEEEcCCeEEEE-----
Q 014977          107 DN---------------------------SQYPPTKVIIWDDHQ---S--RCIGEFAFRSDVRSVKLSRDRIVVV-----  149 (415)
Q Consensus       107 ~d---------------------------~~~~~~~i~vwd~~~---~--~~~~~~~~~~~i~~l~~~~~~~~~~-----  149 (415)
                      ..                           ..+.+..+..|.-..   .  ..-..+.|...|..+.|+..|.+++     
T Consensus       463 ~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~  542 (733)
T KOG0650|consen  463 GECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPD  542 (733)
T ss_pred             cCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccC
Confidence            11                           112345666776331   1  1223456899999999999999998     


Q ss_pred             -eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC-cceEEEecCccceEEEEeCCC
Q 014977          150 -LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLD  227 (415)
Q Consensus       150 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~  227 (415)
                       ....|.|+++...+....|.....  .+.+..++|...+|+++  ....|+|+++.. ..++.+......|..++.+|.
T Consensus       543 ~~~~~VliHQLSK~~sQ~PF~kskG--~vq~v~FHPs~p~lfVa--Tq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~  618 (733)
T KOG0650|consen  543 SGNKSVLIHQLSKRKSQSPFRKSKG--LVQRVKFHPSKPYLFVA--TQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPN  618 (733)
T ss_pred             CCcceEEEEecccccccCchhhcCC--ceeEEEecCCCceEEEE--eccceEEEehhHHHHHHHHhcCCeeeeeeeecCC
Confidence             346799999976665555543333  34455555555555543  367899976654 456666777788999999999


Q ss_pred             CCEEEEEeCCCcEEEEEECCCC-cEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEc
Q 014977          228 GLLLATASTRGTLIRIFNTVDG-TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSL  290 (415)
Q Consensus       228 g~~l~s~s~dg~~I~vwd~~~~-~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~  290 (415)
                      |.-|+.++.|+. +..||+.-. ++.+++.-  |...+++++|++.-.++++|+.||++.||.-
T Consensus       619 GDnli~gs~d~k-~~WfDldlsskPyk~lr~--H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg  679 (733)
T KOG0650|consen  619 GDNLILGSYDKK-MCWFDLDLSSKPYKTLRL--HEKAVRSVAFHKRYPLFASGSDDGTVIVFHG  679 (733)
T ss_pred             CCeEEEecCCCe-eEEEEcccCcchhHHhhh--hhhhhhhhhhccccceeeeecCCCcEEEEee
Confidence            999999999999 999999755 56667776  8889999999999999999999999999863

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.83  E-value=1.1e-18  Score=154.59  Aligned_cols=249  Identities=10%  Similarity=0.071  Sum_probs=180.1

Q ss_pred             ccCCCCCCceEEEEEeCCC--CEEEEEe-CCcEEEEEccCCcee--EEEeccCCCeeEEEEeeeCC-eEEEEecCCCCCC
Q 014977           38 AFSDVDEIELISVSWNQDY--GCFAAGT-SCGFRIYNCEPFKET--FRRDLKSGGFRIVEMLFRCN-ILALVGAGDNSQY  111 (415)
Q Consensus        38 ~~~~~h~~~V~~l~~sp~g--~~la~g~-d~~v~iw~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~~  111 (415)
                      +...-+.++|++++|+|..  +++|+|. .|.|-+||+.+.++.  -...+..|...|.++.|+|. ...+.+.+.|   
T Consensus       180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyD---  256 (498)
T KOG4328|consen  180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYD---  256 (498)
T ss_pred             ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccC---
Confidence            3345688999999999965  5788888 999999999532221  11234588889999999984 4556666766   


Q ss_pred             CCCeEEEEECCCCCEEEEEE---ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCcee-eeEEeccCCCcceEEEecCC
Q 014977          112 PPTKVIIWDDHQSRCIGEFA---FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKL-LHQIETLANLRGLCCLSHHS  184 (415)
Q Consensus       112 ~~~~i~vwd~~~~~~~~~~~---~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~  184 (415)
                        |+|++-|++++.....+.   ....+.++.|+.+...++   .=|...+||+++.+. ...+..|..  .+..++.+|
T Consensus       257 --GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k--KI~sv~~NP  332 (498)
T KOG4328|consen  257 --GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKK--KITSVALNP  332 (498)
T ss_pred             --ceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhc--ccceeecCC
Confidence              999999988765433332   344566777876655444   235789999987654 555666766  455556666


Q ss_pred             CceEEEEeCCccCeEEEEEcCC---c--ceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECC----CCcEEEEE
Q 014977          185 STSVLACPGLQRGQVRIEHFGL---N--MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTV----DGTRLQEV  255 (415)
Q Consensus       185 ~~~~l~~~g~~dg~v~i~~~~~---~--~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~----~~~~~~~~  255 (415)
                      ...+++++++.|++++||+.+.   +  ++.....|...|.+..|||.|-.|++.+.|.. |+|||..    .-.++.++
T Consensus       333 ~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~-IRv~dss~~sa~~~p~~~I  411 (498)
T KOG4328|consen  333 VCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNE-IRVFDSSCISAKDEPLGTI  411 (498)
T ss_pred             CCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCc-eEEeecccccccCCcccee
Confidence            6666666788999999999764   2  23455689999999999998888999999999 9999983    33445555


Q ss_pred             ecCCCcc---cEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977          256 RRGVDRA---EIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (415)
Q Consensus       256 ~~~~~~~---~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  294 (415)
                      .-....+   ......|.|+..++++|-.-..|-|||-..++
T Consensus       412 ~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q  453 (498)
T KOG4328|consen  412 PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ  453 (498)
T ss_pred             eccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCE
Confidence            4211111   34456899999999999999999999977666

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=2.9e-18  Score=163.96  Aligned_cols=241  Identities=14%  Similarity=0.141  Sum_probs=183.4

Q ss_pred             CCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCC-CEEEEEE-ccCceeEEEEcCCeEEEE-eCCeEEEEEcCC
Q 014977           85 SGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQS-RCIGEFA-FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVD  161 (415)
Q Consensus        85 ~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~-~~~~~~~-~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~  161 (415)
                      .|..+...++|.+++.++++++.|     +.|++|+.... +.-..+. +...|.+++......... .+++|.+|.+..
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsd-----g~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps   85 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSD-----GDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPS   85 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCC-----CceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCC
Confidence            566778899999999999999988     99999996555 3333444 777888888776644444 799999999987


Q ss_pred             ceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEE-EEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcE
Q 014977          162 LKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI-EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTL  240 (415)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i-~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~  240 (415)
                      ++.-..+....-++..  +.++.+|.++|+ |+.|-.|++ ...+....+.+++|.++|.++.|+|++.+||+.+-||. 
T Consensus        86 ~~~~~iL~Rftlp~r~--~~v~g~g~~iaa-gsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~-  161 (933)
T KOG1274|consen   86 GEEDTILARFTLPIRD--LAVSGSGKMIAA-GSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGK-  161 (933)
T ss_pred             CCccceeeeeeccceE--EEEecCCcEEEe-ecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCce-
Confidence            7654444333333344  445556677876 778999998 66677888999999999999999999999999999999 


Q ss_pred             EEEEECCCCcEEEEEecCC------CcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCccccccc
Q 014977          241 IRIFNTVDGTRLQEVRRGV------DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLN  314 (415)
Q Consensus       241 I~vwd~~~~~~~~~~~~~~------~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  314 (415)
                      |+|||+.++.+...+.+-.      ....+..++|+|+|..++....|+.|++|+....+...++...            
T Consensus       162 v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~------------  229 (933)
T KOG1274|consen  162 VQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDK------------  229 (933)
T ss_pred             EEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccc------------
Confidence            9999999988776665311      1335678999999888999999999999999888753211111            


Q ss_pred             CCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEe
Q 014977          315 HSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFD  388 (415)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~  388 (415)
                                                                ......++++|+|+ ..|++++-||.|.||+++
T Consensus       230 ------------------------------------------~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~  262 (933)
T KOG1274|consen  230 ------------------------------------------LSSSKFSDLQWSPNGKYIAASTLDGQILVWNVD  262 (933)
T ss_pred             ------------------------------------------ccccceEEEEEcCCCcEEeeeccCCcEEEEecc
Confidence                                                      01123567999999 556666669999999998

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.82  E-value=6.6e-18  Score=141.96  Aligned_cols=204  Identities=12%  Similarity=0.171  Sum_probs=153.2

Q ss_pred             CCeeEEEEeeeC-CeEEEEecCCCCCCCCCeEEEEECCCCC----------EEEEE--E----ccCceeEEEEcCC--eE
Q 014977           86 GGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQSR----------CIGEF--A----FRSDVRSVKLSRD--RI  146 (415)
Q Consensus        86 ~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~i~vwd~~~~~----------~~~~~--~----~~~~i~~l~~~~~--~~  146 (415)
                      |...+..+...+ .+.++++|+.|     |.|.|||+++..          .+..+  .    |+-.|.++.|-|-  |.
T Consensus        42 HgGsvNsL~id~tegrymlSGgad-----gsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGm  116 (397)
T KOG4283|consen   42 HGGSVNSLQIDLTEGRYMLSGGAD-----GSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGM  116 (397)
T ss_pred             CCCccceeeeccccceEEeecCCC-----ccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCce
Confidence            344455555444 57889999988     999999987532          11111  1    6678999999884  44


Q ss_pred             EEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEE-EEcCCcceEEEecCccceEEEE
Q 014977          147 VVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI-EHFGLNMIKLINAHDSHIACFT  223 (415)
Q Consensus       147 ~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i-~~~~~~~~~~~~~~~~~i~~l~  223 (415)
                      +..  .|.+++|||..+.+....|+.... +...++++-.....|+++|..+-.|++ +...+.....+.+|...|.++.
T Consensus       117 FtssSFDhtlKVWDtnTlQ~a~~F~me~~-VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~  195 (397)
T KOG4283|consen  117 FTSSSFDHTLKVWDTNTLQEAVDFKMEGK-VYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVE  195 (397)
T ss_pred             eecccccceEEEeecccceeeEEeecCce-eehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEE
Confidence            444  699999999999888777765432 344455554443345556888999999 6677888999999999999999


Q ss_pred             eCCCCCE-EEEEeCCCcEEEEEECCCC-cEEEEEe------------cCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEE
Q 014977          224 LTLDGLL-LATASTRGTLIRIFNTVDG-TRLQEVR------------RGVDRAEIYSIALSPNVQWLAVASDKGTVHIFS  289 (415)
Q Consensus       224 ~sp~g~~-l~s~s~dg~~I~vwd~~~~-~~~~~~~------------~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd  289 (415)
                      |+|...+ |++|+.||. |++||++.- .+...+.            ...|.+.|.+++|+.|+.++++.+.|..+++|+
T Consensus       196 Wsp~~e~vLatgsaDg~-irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn  274 (397)
T KOG4283|consen  196 WSPSSEWVLATGSADGA-IRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWN  274 (397)
T ss_pred             eccCceeEEEecCCCce-EEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEee
Confidence            9998875 789999999 999999754 2332322            233667899999999999999999999999999


Q ss_pred             ceecccC
Q 014977          290 LRVRVVG  296 (415)
Q Consensus       290 ~~~~~~~  296 (415)
                      ..+|+..
T Consensus       275 ~~~G~nt  281 (397)
T KOG4283|consen  275 MESGRNT  281 (397)
T ss_pred             cccCccc
Confidence            9998754

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.82  E-value=3.1e-18  Score=158.32  Aligned_cols=270  Identities=13%  Similarity=0.137  Sum_probs=207.6

Q ss_pred             ceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCC
Q 014977           46 ELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR  125 (415)
Q Consensus        46 ~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~  125 (415)
                      .|+.++|-|||..|+.+.+..+.|||.+.+....  .+++|...+.+++|+.+|..+++|+.|     ..|.+|. ..-+
T Consensus        14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llq--tLKgHKDtVycVAys~dGkrFASG~aD-----K~VI~W~-~klE   85 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQ--PLKGHKDTVYCVAYAKDGKRFASGSAD-----KSVIIWT-SKLE   85 (1081)
T ss_pred             chheeEECCCCceEEEecCCEEEEEeCCCccccc--ccccccceEEEEEEccCCceeccCCCc-----eeEEEec-cccc
Confidence            8999999999999999999999999998766544  466999999999999999999999998     9999998 4445


Q ss_pred             EEEEEEccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEE
Q 014977          126 CIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEH  203 (415)
Q Consensus       126 ~~~~~~~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~  203 (415)
                      -+..+.|...|.+|.|+|-...++  .=...-+|...+....    .+.....+++.+|..+|.+++. |-.+|+|.|-+
T Consensus        86 G~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~----K~kss~R~~~CsWtnDGqylal-G~~nGTIsiRN  160 (1081)
T KOG1538|consen   86 GILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVS----KHKSSSRIICCSWTNDGQYLAL-GMFNGTISIRN  160 (1081)
T ss_pred             ceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHH----hhhhheeEEEeeecCCCcEEEE-eccCceEEeec
Confidence            556677999999999999877776  4445567876543222    2333447788899999999987 88999999977


Q ss_pred             cCCcceEEEe---cCccceEEEEeCCCC-----CEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCE
Q 014977          204 FGLNMIKLIN---AHDSHIACFTLTLDG-----LLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQW  275 (415)
Q Consensus       204 ~~~~~~~~~~---~~~~~i~~l~~sp~g-----~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~  275 (415)
                      ..++....+.   +...+|.+++|+|..     ..+++.....+ +.+|.+ +|+.+..-+.  -.-...++.+-++|.+
T Consensus       161 k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qT-LSFy~L-sG~~Igk~r~--L~FdP~CisYf~NGEy  236 (1081)
T KOG1538|consen  161 KNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQT-LSFYQL-SGKQIGKDRA--LNFDPCCISYFTNGEY  236 (1081)
T ss_pred             CCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccce-eEEEEe-cceeeccccc--CCCCchhheeccCCcE
Confidence            7776655554   367899999999953     47888888888 888887 6666654333  2234678999999999


Q ss_pred             EEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEE
Q 014977          276 LAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQF  355 (415)
Q Consensus       276 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (415)
                      +..|+.|+.+++|--+.-.-+                                           . +..           
T Consensus       237 ~LiGGsdk~L~~fTR~GvrLG-------------------------------------------T-vg~-----------  261 (1081)
T KOG1538|consen  237 ILLGGSDKQLSLFTRDGVRLG-------------------------------------------T-VGE-----------  261 (1081)
T ss_pred             EEEccCCCceEEEeecCeEEe-------------------------------------------e-ccc-----------
Confidence            999999999999864322211                                           0 000           


Q ss_pred             EeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977          356 HIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       356 ~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~  389 (415)
                        .+.-...++..|+ ..++++|.||++--|++-.
T Consensus       262 --~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f  294 (1081)
T KOG1538|consen  262 --QDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF  294 (1081)
T ss_pred             --cceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence              0123455778888 7889999999999998764

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.82  E-value=1.8e-18  Score=152.93  Aligned_cols=233  Identities=14%  Similarity=0.149  Sum_probs=165.6

Q ss_pred             CCEEEEEe-CCcEEEEEccCCceeEE-Ee------------------ccCCCeeEEEEeeeCC-eEEEEecCCCCCCCCC
Q 014977           56 YGCFAAGT-SCGFRIYNCEPFKETFR-RD------------------LKSGGFRIVEMLFRCN-ILALVGAGDNSQYPPT  114 (415)
Q Consensus        56 g~~la~g~-d~~v~iw~~~~~~~~~~-~~------------------~~~~~~~~~~~~~~~~-~~~l~s~~~d~~~~~~  114 (415)
                      |.++|+|+ +..|.|||++-...++. ..                  ..+|...+..+.|+.. ..+|++|+.|     .
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD-----~  266 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSAD-----K  266 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCC-----c
Confidence            57999999 99999999962111100 00                  1245556667777765 4688999988     9


Q ss_pred             eEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE----eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEE
Q 014977          115 KVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVL  189 (415)
Q Consensus       115 ~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  189 (415)
                      +|++||+.++++...+. |...|.++.|+|....++    .|+++.+.|.+........-.....+..+.|.+...  ..
T Consensus       267 TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se--~~  344 (463)
T KOG0270|consen  267 TVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSE--NS  344 (463)
T ss_pred             eEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCc--ee
Confidence            99999999999999999 899999999998754444    699999999985322211111122234444554443  44


Q ss_pred             EEeCCccCeEEEEEcC--CcceEEEecCccceEEEEeCCCC-CEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEE
Q 014977          190 ACPGLQRGQVRIEHFG--LNMIKLINAHDSHIACFTLTLDG-LLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYS  266 (415)
Q Consensus       190 ~~~g~~dg~v~i~~~~--~~~~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~  266 (415)
                      +.++..||+|+-.+.+  ++++.++++|..+|.+|++++.- .+|++++.|+. |++|++..............-+...|
T Consensus       345 f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~-Vklw~~~~~~~~~v~~~~~~~~rl~c  423 (463)
T KOG0270|consen  345 FFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKV-VKLWKFDVDSPKSVKEHSFKLGRLHC  423 (463)
T ss_pred             EEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccce-EEEEeecCCCCcccccccccccceee
Confidence            4457799999996654  37899999999999999998754 47899999999 99999865443222111101234667


Q ss_pred             EEeCCCCC-EEEEEeCCCeEEEEEceecccC
Q 014977          267 IALSPNVQ-WLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       267 l~~spdg~-~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                      +++.|+-. +|+.|+..+.++|||+.+....
T Consensus       424 ~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  424 FALDPDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             cccCCCcceEEEecCccceEEEeecccChhH
Confidence            78888654 5677888888999999887643

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.81  E-value=2.3e-18  Score=149.26  Aligned_cols=205  Identities=15%  Similarity=0.182  Sum_probs=156.0

Q ss_pred             ccCceeEEEEcCCe--EEEE---eCCeEEEEEcC----------------CceeeeEEeccCCCcceEEEecCCCceEEE
Q 014977          132 FRSDVRSVKLSRDR--IVVV---LEHKIYVYSFV----------------DLKLLHQIETLANLRGLCCLSHHSSTSVLA  190 (415)
Q Consensus       132 ~~~~i~~l~~~~~~--~~~~---~d~~i~iwd~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  190 (415)
                      |.+.++.+...+-+  .+.+   ..|.|+||++.                ..+.+.++.+|......++|++...|.++ 
T Consensus       150 h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll-  228 (440)
T KOG0302|consen  150 HYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL-  228 (440)
T ss_pred             cccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc-
Confidence            56667777666543  2333   58999999983                23456777777765566677765555444 


Q ss_pred             EeCCccCeEEEEEcCCcc----eEEEecCccceEEEEeCCCC-CEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEE
Q 014977          191 CPGLQRGQVRIEHFGLNM----IKLINAHDSHIACFTLTLDG-LLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIY  265 (415)
Q Consensus       191 ~~g~~dg~v~i~~~~~~~----~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~  265 (415)
                       +|..-+.|++|......    ...+.+|...|-.++|||.. ..|++|+-||+ |+|||++.+.....+....|.+.|+
T Consensus       229 -sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dgs-IrIWDiRs~~~~~~~~~kAh~sDVN  306 (440)
T KOG0302|consen  229 -SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGS-IRIWDIRSGPKKAAVSTKAHNSDVN  306 (440)
T ss_pred             -cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCce-EEEEEecCCCccceeEeeccCCcee
Confidence             47677788888765422    23466799999999999965 48999999999 9999999984322222233888999


Q ss_pred             EEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcc
Q 014977          266 SIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKY  345 (415)
Q Consensus       266 ~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (415)
                      -|.|+.+..+||+|++||+++|||++.-+..                                                 
T Consensus       307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~-------------------------------------------------  337 (440)
T KOG0302|consen  307 VISWNRREPLLASGGDDGTLSIWDLRQFKSG-------------------------------------------------  337 (440)
T ss_pred             eEEccCCcceeeecCCCceEEEEEhhhccCC-------------------------------------------------
Confidence            9999998889999999999999999987632                                                 


Q ss_pred             cccccceEEEEeCCCceEEEEecCC--CEEEEEEeCCcEEEEEEecCCC
Q 014977          346 FSSEWSFAQFHIPEVTHFIAAFGSQ--NTVVIVSMDGSFYRCSFDPVHG  392 (415)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~dg~~~~~~~~~~~~  392 (415)
                          ..+++|+....+.+.+.|+|.  ..|+++|.|..+-+|.+..+..
T Consensus       338 ----~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D  382 (440)
T KOG0302|consen  338 ----QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEAD  382 (440)
T ss_pred             ----CcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCC
Confidence                235788888889999999997  7888888999999999986533

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.80  E-value=2.6e-19  Score=175.00  Aligned_cols=244  Identities=15%  Similarity=0.231  Sum_probs=189.9

Q ss_pred             CCCceEEEEEeCCCCE----EEEEe-CCcEEEEEccCC----ceeEEEeccCCCeeEEEEeeeCCe-EEEEecCCCCCCC
Q 014977           43 DEIELISVSWNQDYGC----FAAGT-SCGFRIYNCEPF----KETFRRDLKSGGFRIVEMLFRCNI-LALVGAGDNSQYP  112 (415)
Q Consensus        43 h~~~V~~l~~sp~g~~----la~g~-d~~v~iw~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~~~  112 (415)
                      ...+.+.++|.+.|..    ||.|. ||.|.+|+....    ..........|...|..+.|++.. .++++|+++    
T Consensus        63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~----  138 (1049)
T KOG0307|consen   63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADD----  138 (1049)
T ss_pred             ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCC----
Confidence            3567899999998876    66666 999999998752    112222345788899999999965 599999988    


Q ss_pred             CCeEEEEECCCCCEEEEEE---ccCceeEEEEcCCeEEEE----eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCC
Q 014977          113 PTKVIIWDDHQSRCIGEFA---FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSS  185 (415)
Q Consensus       113 ~~~i~vwd~~~~~~~~~~~---~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (415)
                       |.|.|||+.+-+.-....   ....|.+++|+..-..++    .+|.+.|||++..+.+-.+..+.....+..+.|+|+
T Consensus       139 -geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~  217 (1049)
T KOG0307|consen  139 -GEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPD  217 (1049)
T ss_pred             -CcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCC
Confidence             999999988754433332   567899999998766555    578999999998887777766554444445555554


Q ss_pred             --ceEEEEeCCccC--eEEEEEcCC--cceEEEecCccceEEEEeCCCC-CEEEEEeCCCcEEEEEECCCCcEEEEEecC
Q 014977          186 --TSVLACPGLQRG--QVRIEHFGL--NMIKLINAHDSHIACFTLTLDG-LLLATASTRGTLIRIFNTVDGTRLQEVRRG  258 (415)
Q Consensus       186 --~~~l~~~g~~dg--~v~i~~~~~--~~~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~  258 (415)
                        .+++++++ +|+  .|.+|+.+.  .+++.+++|...|.++.|++.+ ++|++++.|+. |.+|+.++++.+..+.. 
T Consensus       218 ~aTql~~As~-dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~-ii~wN~~tgEvl~~~p~-  294 (1049)
T KOG0307|consen  218 HATQLLVASG-DDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNR-IICWNPNTGEVLGELPA-  294 (1049)
T ss_pred             CceeeeeecC-CCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCC-eeEecCCCceEeeecCC-
Confidence              44554433 333  466699765  5678889999999999999966 89999999999 99999999999999987 


Q ss_pred             CCcccEEEEEeCCCCC-EEEEEeCCCeEEEEEceeccc
Q 014977          259 VDRAEIYSIALSPNVQ-WLAVASDKGTVHIFSLRVRVV  295 (415)
Q Consensus       259 ~~~~~v~~l~~spdg~-~l~s~s~dg~i~vwd~~~~~~  295 (415)
                       ....+..+.|+|... .+++++.||.|.||.+.....
T Consensus       295 -~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~~  331 (1049)
T KOG0307|consen  295 -QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTDT  331 (1049)
T ss_pred             -CCcceeeeeecCCCcchhhhheeccceeeeeeecCCc
Confidence             567899999999665 888999999999999988763

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.80  E-value=1.1e-17  Score=154.07  Aligned_cols=281  Identities=14%  Similarity=0.118  Sum_probs=191.5

Q ss_pred             EEEEEeC---CCCEEEEEe-CCcEEEEEccCCcee----EEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEE
Q 014977           48 ISVSWNQ---DYGCFAAGT-SCGFRIYNCEPFKET----FRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIW  119 (415)
Q Consensus        48 ~~l~~sp---~g~~la~g~-d~~v~iw~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vw  119 (415)
                      .+..|++   ....||.+. +|.|.++|.......    .......|...+.++.|.+....|++++.|     .++++|
T Consensus        53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGD-----sT~r~W  127 (720)
T KOG0321|consen   53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGD-----STIRPW  127 (720)
T ss_pred             ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCC-----ceeeee
Confidence            3456664   234677888 999999998643221    112234788999999999977888888887     999999


Q ss_pred             ECCCCCEEEE---EEccCceeEEEEcCCeEEEE----eCCeEEEEEcCCce--------------------eee------
Q 014977          120 DDHQSRCIGE---FAFRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLK--------------------LLH------  166 (415)
Q Consensus       120 d~~~~~~~~~---~~~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~--------------------~~~------  166 (415)
                      |+++++++..   +.|...|.+++|.+....++    .||.|.|||++...                    ..+      
T Consensus       128 dvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~  207 (720)
T KOG0321|consen  128 DVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRI  207 (720)
T ss_pred             eeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccc
Confidence            9999988776   34999999999999877666    79999999984321                    000      


Q ss_pred             -EEeccCCCc-ceEEEecCCCceEEEEeCCccCeEEEEEcCCcc---------eEEEecC---ccceEEEEeCCCCCEEE
Q 014977          167 -QIETLANLR-GLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNM---------IKLINAH---DSHIACFTLTLDGLLLA  232 (415)
Q Consensus       167 -~~~~~~~~~-~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~---------~~~~~~~---~~~i~~l~~sp~g~~l~  232 (415)
                       ....+...+ ..+......|...||++|..|+.|++||++...         ...+..|   .-.+.++.....|.+|.
T Consensus       208 ~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~  287 (720)
T KOG0321|consen  208 RKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLF  287 (720)
T ss_pred             cccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEE
Confidence             000111111 111123333456788877779999999987532         1122223   34577888888899988


Q ss_pred             EEeCCCcEEEEEECCCCc--EEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCccc
Q 014977          233 TASTRGTLIRIFNTVDGT--RLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQST  310 (415)
Q Consensus       233 s~s~dg~~I~vwd~~~~~--~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  310 (415)
                      +.+.|+. |++|++.+..  ++..+.+.....--..-..+||+.+|++|+.|...++|.+.+.+....            
T Consensus       288 AsCtD~s-Iy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~------------  354 (720)
T KOG0321|consen  288 ASCTDNS-IYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPA------------  354 (720)
T ss_pred             EEecCCc-EEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChh------------
Confidence            8888999 9999997643  344444321111112234689999999999999999999998874320            


Q ss_pred             ccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC--CEEEEEEeCCcEEEEEEe
Q 014977          311 ELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ--NTVVIVSMDGSFYRCSFD  388 (415)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~dg~~~~~~~~  388 (415)
                                               .+++.             +     -.+..+.|.+.  ..+++++.|-.+.+|.+.
T Consensus       355 -------------------------~l~Gh-------------t-----~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~  391 (720)
T KOG0321|consen  355 -------------------------LLLGH-------------T-----REVTTVRWLPSATTPVATCSDDFRVKIWRLS  391 (720)
T ss_pred             -------------------------hhhCc-------------c-----eEEEEEeeccccCCCceeeccCcceEEEecc
Confidence                                     11111             1     23455777765  888888889999999995


Q ss_pred             c
Q 014977          389 P  389 (415)
Q Consensus       389 ~  389 (415)
                      .
T Consensus       392 ~  392 (720)
T KOG0321|consen  392 N  392 (720)
T ss_pred             C
Confidence            4

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.79  E-value=1.4e-17  Score=157.67  Aligned_cols=235  Identities=14%  Similarity=0.183  Sum_probs=178.4

Q ss_pred             CceEEEEEeCCC----CEEEEEe--CCcEEEEEccCCce-eEE---EeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCC
Q 014977           45 IELISVSWNQDY----GCFAAGT--SCGFRIYNCEPFKE-TFR---RDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPT  114 (415)
Q Consensus        45 ~~V~~l~~sp~g----~~la~g~--d~~v~iw~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~  114 (415)
                      .+|..+++....    .-++++.  +...+.|++..... ...   ..++.....+.+++.++.|.+.+.|...     |
T Consensus       396 p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~-----G  470 (910)
T KOG1539|consen  396 PPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSK-----G  470 (910)
T ss_pred             CcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccC-----C
Confidence            346666665322    1233333  77789999875332 111   1122345677888888888777777665     9


Q ss_pred             eEEEEECCCCCEEEEE----EccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCce
Q 014977          115 KVIIWDDHQSRCIGEF----AFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS  187 (415)
Q Consensus       115 ~i~vwd~~~~~~~~~~----~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (415)
                      .|.+|++.+|-....+    .|..+|++++...-++.++   .+|.+++||......+..+.....   +.++..+....
T Consensus       471 ~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~---~~~iv~hr~s~  547 (910)
T KOG1539|consen  471 TIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSS---ITGIVYHRVSD  547 (910)
T ss_pred             eEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCC---cceeeeeehhh
Confidence            9999999999888888    3899999999998887777   799999999988887777755432   33333333333


Q ss_pred             EEEEeCCccCeEEE-EEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEE
Q 014977          188 VLACPGLQRGQVRI-EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYS  266 (415)
Q Consensus       188 ~l~~~g~~dg~v~i-~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~  266 (415)
                      .++. +..|-.|.+ +....+.++.+.+|...|++++|||||++|++++.|++ |++||+.++.++-.+.   -..+++.
T Consensus       548 l~a~-~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~t-Ir~wDlpt~~lID~~~---vd~~~~s  622 (910)
T KOG1539|consen  548 LLAI-ALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDST-IRTWDLPTGTLIDGLL---VDSPCTS  622 (910)
T ss_pred             hhhh-hcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCc-EEEEeccCcceeeeEe---cCCccee
Confidence            4554 557778888 55566778899999999999999999999999999999 9999999999998887   4668999


Q ss_pred             EEeCCCCCEEEEEeCC-CeEEEEEcee
Q 014977          267 IALSPNVQWLAVASDK-GTVHIFSLRV  292 (415)
Q Consensus       267 l~~spdg~~l~s~s~d-g~i~vwd~~~  292 (415)
                      +.|+|+|.+||+...| .-|++|-=.+
T Consensus       623 ls~SPngD~LAT~Hvd~~gIylWsNks  649 (910)
T KOG1539|consen  623 LSFSPNGDFLATVHVDQNGIYLWSNKS  649 (910)
T ss_pred             eEECCCCCEEEEEEecCceEEEEEchh
Confidence            9999999999999888 4699996443

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=5.8e-19  Score=172.56  Aligned_cols=278  Identities=14%  Similarity=0.194  Sum_probs=194.5

Q ss_pred             EEEEEeCCCC-EEEEEe-----------CCcEEEEEccCCcee----EEEeccCCCeeEEEEeeeCCeE----EEEecCC
Q 014977           48 ISVSWNQDYG-CFAAGT-----------SCGFRIYNCEPFKET----FRRDLKSGGFRIVEMLFRCNIL----ALVGAGD  107 (415)
Q Consensus        48 ~~l~~sp~g~-~la~g~-----------d~~v~iw~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~----~l~s~~~  107 (415)
                      ..++|+|++. ++|+|.           +.++.||.++.....    ....+ ....+...+.|.+.+.    ++++|..
T Consensus        10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~-~s~~rF~kL~W~~~g~~~~GlIaGG~e   88 (1049)
T KOG0307|consen   10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSL-QSSNRFNKLAWGSYGSHSHGLIAGGLE   88 (1049)
T ss_pred             ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccc-cccccceeeeecccCCCccceeecccc
Confidence            3578999887 555543           334566665422111    11111 3345566788877553    4788888


Q ss_pred             CCCCCCCeEEEEECCC---CC---EEEEEE-ccCceeEEEEcCCeE-EEE---eCCeEEEEEcCCceeeeEEeccCCCcc
Q 014977          108 NSQYPPTKVIIWDDHQ---SR---CIGEFA-FRSDVRSVKLSRDRI-VVV---LEHKIYVYSFVDLKLLHQIETLANLRG  176 (415)
Q Consensus       108 d~~~~~~~i~vwd~~~---~~---~~~~~~-~~~~i~~l~~~~~~~-~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~  176 (415)
                      |     |.|.+||...   +.   .+.... |.+.|..+.|++... +++   .+|.|.|||+...+.-........+..
T Consensus        89 d-----G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~e  163 (1049)
T KOG0307|consen   89 D-----GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSE  163 (1049)
T ss_pred             C-----CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCccc
Confidence            7     9999999654   22   233333 999999999999765 666   789999999987554444433333446


Q ss_pred             eEEEecCCCceEEEEeCCccCeEEEEEcCCc-ceEEEecCc--cceEEEEeCCCCC-EEEEEeCCCc--EEEEEECCCC-
Q 014977          177 LCCLSHHSSTSVLACPGLQRGQVRIEHFGLN-MIKLINAHD--SHIACFTLTLDGL-LLATASTRGT--LIRIFNTVDG-  249 (415)
Q Consensus       177 ~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~-~~~~~~~~~--~~i~~l~~sp~g~-~l~s~s~dg~--~I~vwd~~~~-  249 (415)
                      +.+++|+.+-..++++++.+|.+.|||.+.+ .+..+..+.  ..+..++|+|+.. .|++++.|..  .|.+||++.- 
T Consensus       164 I~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as  243 (1049)
T KOG0307|consen  164 IKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS  243 (1049)
T ss_pred             ceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC
Confidence            7888998887777777889999999998875 344444443  3477899999874 5666665542  4999998754 


Q ss_pred             cEEEEEecCCCcccEEEEEeCCCC-CEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCC
Q 014977          250 TRLQEVRRGVDRAEIYSIALSPNV-QWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTG  328 (415)
Q Consensus       250 ~~~~~~~~~~~~~~v~~l~~spdg-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (415)
                      .+++++..  |...|.++.|++.+ ++|++++.|+.|.+|+.++++...++..+                          
T Consensus       244 sP~k~~~~--H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~--------------------------  295 (1049)
T KOG0307|consen  244 SPLKILEG--HQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQ--------------------------  295 (1049)
T ss_pred             Cchhhhcc--cccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCC--------------------------
Confidence            56677766  88899999999965 89999999999999999998854211111                          


Q ss_pred             CCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC--CEEEEEEeCCcEEEEEEec
Q 014977          329 ANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ--NTVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~dg~~~~~~~~~  389 (415)
                                                    .+-...+.|.+.  +.+.+++-||.|-||++..
T Consensus       296 ------------------------------~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~  328 (1049)
T KOG0307|consen  296 ------------------------------GNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG  328 (1049)
T ss_pred             ------------------------------CcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence                                          122334788887  6777777799999999975

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.79  E-value=2.6e-17  Score=140.40  Aligned_cols=245  Identities=14%  Similarity=0.192  Sum_probs=175.1

Q ss_pred             cCCCCCCceEEEEEeC-----CCCEEEEEeCCcEEEEEccCCc--eeEEEec-cCCCeeEEEEeee--CC--eEEEEecC
Q 014977           39 FSDVDEIELISVSWNQ-----DYGCFAAGTSCGFRIYNCEPFK--ETFRRDL-KSGGFRIVEMLFR--CN--ILALVGAG  106 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp-----~g~~la~g~d~~v~iw~~~~~~--~~~~~~~-~~~~~~~~~~~~~--~~--~~~l~s~~  106 (415)
                      ...+|..+|..++|++     +-..+|+.+.+.+.||++....  ..+.... ..+......++|.  .+  ..+++.++
T Consensus        33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G  112 (385)
T KOG1034|consen   33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG  112 (385)
T ss_pred             hhccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence            4678999999999995     2346777778899999987544  2222222 1233444444443  32  45677766


Q ss_pred             CCCCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE----eCCeEEEEEcCCceeeeEEe---ccCCCcceE
Q 014977          107 DNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIE---TLANLRGLC  178 (415)
Q Consensus       107 ~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~  178 (415)
                      .-     |.|+|.|+.++++...+. |...|+.|.+.|+...++    .|..|++|++++..++..+.   +|..  .++
T Consensus       113 ~~-----GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrd--eVL  185 (385)
T KOG1034|consen  113 YL-----GVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRD--EVL  185 (385)
T ss_pred             ce-----eEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccC--cEE
Confidence            65     999999999999999888 999999999999874333    79999999999999998884   4554  677


Q ss_pred             EEecCCCceEEEEeCCccCeEEEEEcCCcceE-----------------------------EEecCccceEEEEeCCCCC
Q 014977          179 CLSHHSSTSVLACPGLQRGQVRIEHFGLNMIK-----------------------------LINAHDSHIACFTLTLDGL  229 (415)
Q Consensus       179 ~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~-----------------------------~~~~~~~~i~~l~~sp~g~  229 (415)
                      ++.++.++..|++ ++.|.++++|.+..+...                             +-..|...|.|+.|  -|.
T Consensus       186 SvD~~~~gd~i~S-cGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw--~gd  262 (385)
T KOG1034|consen  186 SVDFSLDGDRIAS-CGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW--FGD  262 (385)
T ss_pred             EEEEcCCCCeeec-cCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH--Hhh
Confidence            8888888888876 669999999998731110                             11235555555555  357


Q ss_pred             EEEEEeCCCcEEEEEEC-CCCc-------------EEEEEecCCCcccEEEEE--eCCCCCEEEEEeCCCeEEEEEceec
Q 014977          230 LLATASTRGTLIRIFNT-VDGT-------------RLQEVRRGVDRAEIYSIA--LSPNVQWLAVASDKGTVHIFSLRVR  293 (415)
Q Consensus       230 ~l~s~s~dg~~I~vwd~-~~~~-------------~~~~~~~~~~~~~v~~l~--~spdg~~l~s~s~dg~i~vwd~~~~  293 (415)
                      ++++-+-++. |..|.. +-++             .+.++.-  ....|+-+.  |.|-+++||.|...|.|++||++..
T Consensus       263 ~ilSkscena-I~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~--~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~  339 (385)
T KOG1034|consen  263 FILSKSCENA-IVCWKPGKLEESIHNVKPPESATTILGEFDY--PMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNN  339 (385)
T ss_pred             heeecccCce-EEEEecchhhhhhhccCCCccceeeeeEecc--CccceEEEEEeecHHHHHHhhccCCCcEEEEECCCC
Confidence            8898888888 999976 2111             2223332  234555554  5567889999999999999999988


Q ss_pred             ccC
Q 014977          294 VVG  296 (415)
Q Consensus       294 ~~~  296 (415)
                      +..
T Consensus       340 ep~  342 (385)
T KOG1034|consen  340 EPP  342 (385)
T ss_pred             CCc
Confidence            753

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.78  E-value=1e-17  Score=154.25  Aligned_cols=249  Identities=13%  Similarity=0.091  Sum_probs=174.9

Q ss_pred             cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCC-eEEEEecCCCCCCCCCeE
Q 014977           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCN-ILALVGAGDNSQYPPTKV  116 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~~~~~~i  116 (415)
                      ....|..+|..+.|-|...+|++++ |.++++||++..+..-...+-+|...+.+++|.+. -..+++|+.|     |.|
T Consensus        95 ~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRD-----g~i  169 (720)
T KOG0321|consen   95 KPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRD-----GEI  169 (720)
T ss_pred             ccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCC-----CcE
Confidence            3467999999999999666777777 99999999997665443334488889999999984 5678889988     999


Q ss_pred             EEEECCCCC--------------------EEEEE--------EccCceeE---EEEcCCeEEEE----eCCeEEEEEcCC
Q 014977          117 IIWDDHQSR--------------------CIGEF--------AFRSDVRS---VKLSRDRIVVV----LEHKIYVYSFVD  161 (415)
Q Consensus       117 ~vwd~~~~~--------------------~~~~~--------~~~~~i~~---l~~~~~~~~~~----~d~~i~iwd~~~  161 (415)
                      .|||++-..                    ..+..        .+...|.+   +.+..|...++    .|+.|+|||++.
T Consensus       170 llWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk  249 (720)
T KOG0321|consen  170 LLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRK  249 (720)
T ss_pred             EEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecc
Confidence            999965322                    00000        02233333   44445555555    599999999976


Q ss_pred             ceeeeEE------eccC---CCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcce---EEEecCcc--ceEEEEeCCC
Q 014977          162 LKLLHQI------ETLA---NLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMI---KLINAHDS--HIACFTLTLD  227 (415)
Q Consensus       162 ~~~~~~~------~~~~---~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~---~~~~~~~~--~i~~l~~sp~  227 (415)
                      .......      ..+.   ....++++..+..|.+|.+.+ .|+.|++|+.....+   ..+.++..  .-..-..+|+
T Consensus       250 ~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC-tD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd  328 (720)
T KOG0321|consen  250 NYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC-TDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPD  328 (720)
T ss_pred             cccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe-cCCcEEEEeccccCcCchhhccCcccceeeeeeecCCC
Confidence            5432221      1122   245678888888888887755 699999998876433   33333321  1122346899


Q ss_pred             CCEEEEEeCCCcEEEEEECCCCcE-EEEEecCCCcccEEEEEeCCCC-CEEEEEeCCCeEEEEEceecccC
Q 014977          228 GLLLATASTRGTLIRIFNTVDGTR-LQEVRRGVDRAEIYSIALSPNV-QWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       228 g~~l~s~s~dg~~I~vwd~~~~~~-~~~~~~~~~~~~v~~l~~spdg-~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                      +.+|++|+.|.. .++|.+.+.+. ...+.+  |.-.|++++|.|.. .-++++++|.+++||++..+.+.
T Consensus       329 ~~~l~SgSsd~~-ayiw~vs~~e~~~~~l~G--ht~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e  396 (720)
T KOG0321|consen  329 DCSLLSGSSDEQ-AYIWVVSSPEAPPALLLG--HTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEE  396 (720)
T ss_pred             CceEeccCCCcc-eeeeeecCccCChhhhhC--cceEEEEEeeccccCCCceeeccCcceEEEeccCchhh
Confidence            999999999999 99999987654 334445  77789999998843 34677799999999999776544

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.78  E-value=4.3e-18  Score=159.93  Aligned_cols=157  Identities=14%  Similarity=0.193  Sum_probs=123.3

Q ss_pred             ceeEEEEcC-CeEEEE---eCCeEEEEEcCC---ceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC-
Q 014977          135 DVRSVKLSR-DRIVVV---LEHKIYVYSFVD---LKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-  206 (415)
Q Consensus       135 ~i~~l~~~~-~~~~~~---~d~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~-  206 (415)
                      .+.++.|.. +.++|+   ..|.|.+||+..   .+.+..|..|...+..++|+.  -...++.+|+.||+|++|+++. 
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~--tep~iliSGSQDg~vK~~DlR~~  166 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHS--TEPNILISGSQDGTVKCWDLRSK  166 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeecc--CCccEEEecCCCceEEEEeeecc
Confidence            345667764 234455   689999999976   566677888887555555544  4445666799999999988775 


Q ss_pred             cceEEEecCccceEEEEeCC-CCCEEEEEeCCCcEEEEEECCCCc-EEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCe
Q 014977          207 NMIKLINAHDSHIACFTLTL-DGLLLATASTRGTLIRIFNTVDGT-RLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGT  284 (415)
Q Consensus       207 ~~~~~~~~~~~~i~~l~~sp-~g~~l~s~s~dg~~I~vwd~~~~~-~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~  284 (415)
                      +...++.+....|..+.|+| .+.+++++.+.|. +++||++... +...+..  |.++|.++.|+|++.+||+|+.|++
T Consensus       167 ~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~-lqlWDlRqp~r~~~k~~A--H~GpV~c~nwhPnr~~lATGGRDK~  243 (839)
T KOG0269|consen  167 KSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGY-LQLWDLRQPDRCEKKLTA--HNGPVLCLNWHPNREWLATGGRDKM  243 (839)
T ss_pred             cccccccccchhhhceeeccCCCceEEEecCCce-EEEeeccCchhHHHHhhc--ccCceEEEeecCCCceeeecCCCcc
Confidence            44566777888999999998 5678889998898 9999998654 4555666  9999999999999999999999999


Q ss_pred             EEEEEceecccC
Q 014977          285 VHIFSLRVRVVG  296 (415)
Q Consensus       285 i~vwd~~~~~~~  296 (415)
                      |+|||+..++..
T Consensus       244 vkiWd~t~~~~~  255 (839)
T KOG0269|consen  244 VKIWDMTDSRAK  255 (839)
T ss_pred             EEEEeccCCCcc
Confidence            999999987643

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.77  E-value=1.6e-17  Score=140.96  Aligned_cols=242  Identities=13%  Similarity=0.157  Sum_probs=180.6

Q ss_pred             EEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeE
Q 014977           79 FRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKI  154 (415)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i  154 (415)
                      +.+.+.+|..++..++-.....++.+++.|     .+-++|.+++|+|+.++. |.+.|++++|++.+.+++   .|++.
T Consensus       140 lvre~~GHkDGiW~Vaa~~tqpi~gtASAD-----hTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~ta  214 (481)
T KOG0300|consen  140 LVRELEGHKDGIWHVAADSTQPICGTASAD-----HTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETA  214 (481)
T ss_pred             ehhhhcccccceeeehhhcCCcceeecccc-----cceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcch
Confidence            334456888888888877766788888887     999999999999999998 999999999999999888   68999


Q ss_pred             EEEEcCC----ceeeeEEeccCCCcceEEEecCCCceEEEEe-CCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCC
Q 014977          155 YVYSFVD----LKLLHQIETLANLRGLCCLSHHSSTSVLACP-GLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGL  229 (415)
Q Consensus       155 ~iwd~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~  229 (415)
                      +||...-    .+.... ..|......-+  .+.+....-.. -+...+|++      ++..+++|.+.|.+..|-..|+
T Consensus       215 HIW~~av~~~vP~~~a~-~~hSsEeE~e~--sDe~~~d~d~~~~sD~~tiRv------Pl~~ltgH~~vV~a~dWL~gg~  285 (481)
T KOG0300|consen  215 HIWKAAVNWEVPSNNAP-SDHSSEEEEEH--SDEHNRDTDSSEKSDGHTIRV------PLMRLTGHRAVVSACDWLAGGQ  285 (481)
T ss_pred             HHHHHhhcCcCCCCCCC-CCCCchhhhhc--ccccccccccccccCCceeee------eeeeeeccccceEehhhhcCcc
Confidence            9997421    110000 00100000000  01111111000 011123433      4567889999999999999999


Q ss_pred             EEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcc
Q 014977          230 LLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQS  309 (415)
Q Consensus       230 ~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  309 (415)
                      .+++++.|.+ ..+||+++|+++..+.+  |....+.++-+|..+++++.+.|.+.++||++..-.              
T Consensus       286 Q~vTaSWDRT-AnlwDVEtge~v~~LtG--Hd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~--------------  348 (481)
T KOG0300|consen  286 QMVTASWDRT-ANLWDVETGEVVNILTG--HDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQ--------------  348 (481)
T ss_pred             eeeeeecccc-ceeeeeccCceeccccC--cchhccccccCCcceEEEEeccCceeEeccchhhcc--------------
Confidence            9999999999 99999999999999999  888999999999999999999999999999984321              


Q ss_pred             cccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCCCEEEEEEeCCcEEEEEEec
Q 014977          310 TELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dg~~~~~~~~~  389 (415)
                                                               ..+-|+-..+.+..+.|.-+.+++.++.|-+|.+|.+..
T Consensus       349 -----------------------------------------sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrN  387 (481)
T KOG0300|consen  349 -----------------------------------------SVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRN  387 (481)
T ss_pred             -----------------------------------------eeeeecccccceeEEEEecCCceeecCCCceEEEeeecc
Confidence                                                     122344445677778898889999999999999999987


Q ss_pred             CCC
Q 014977          390 VHG  392 (415)
Q Consensus       390 ~~~  392 (415)
                      ++.
T Consensus       388 MRs  390 (481)
T KOG0300|consen  388 MRS  390 (481)
T ss_pred             ccC
Confidence            543

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=1.8e-16  Score=138.24  Aligned_cols=307  Identities=12%  Similarity=0.047  Sum_probs=207.1

Q ss_pred             ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCC------ceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCC
Q 014977           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPF------KETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQ  110 (415)
Q Consensus        38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~  110 (415)
                      ....+|.+.|+++.|+.++++||+|+ |..++||.++..      +.+. ..-+.|...|.++.|.....++.+|+.+  
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~-~~~~~H~SNIF~L~F~~~N~~~~SG~~~--  126 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIG-VMEHPHRSNIFSLEFDLENRFLYSGERW--  126 (609)
T ss_pred             hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCce-eccCccccceEEEEEccCCeeEecCCCc--
Confidence            44678999999999999999999999 899999999731      1111 1123556889999999999999999998  


Q ss_pred             CCCCeEEEEECCCCCEEEEEEcc---CceeEEEEcCCeEEEE---eCCeEEEEEcCCce-eeeEEeccCCCcceEEEecC
Q 014977          111 YPPTKVIIWDDHQSRCIGEFAFR---SDVRSVKLSRDRIVVV---LEHKIYVYSFVDLK-LLHQIETLANLRGLCCLSHH  183 (415)
Q Consensus       111 ~~~~~i~vwd~~~~~~~~~~~~~---~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~  183 (415)
                         ++|...|+++.+.+..+.|.   +.|+.+..+|....++   .++.|.+||.+... .+..+-....+......-++
T Consensus       127 ---~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~  203 (609)
T KOG4227|consen  127 ---GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFH  203 (609)
T ss_pred             ---ceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeec
Confidence               99999999999999998864   4999999999766655   68999999997654 33222222222344445555


Q ss_pred             CCceEEEEeCCccCeEEEEEcCCcceEEE--------ecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcE-EEE
Q 014977          184 SSTSVLACPGLQRGQVRIEHFGLNMIKLI--------NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR-LQE  254 (415)
Q Consensus       184 ~~~~~l~~~g~~dg~v~i~~~~~~~~~~~--------~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~-~~~  254 (415)
                      |....|+.+.+..+-+-+|+.+......+        ......-..+.|+|+|..|.+--.... -.+||+.+..+ +..
T Consensus       204 P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~-P~~~D~~S~R~~V~k  282 (609)
T KOG4227|consen  204 PETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKC-PLYFDFISQRCFVLK  282 (609)
T ss_pred             CCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCC-CEEeeeecccceeEe
Confidence            55555555677888899998876432211        111223367889999998887776666 67888876443 223


Q ss_pred             Ee----cCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCC
Q 014977          255 VR----RGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGAN  330 (415)
Q Consensus       255 ~~----~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (415)
                      +.    +......+.+++|..| ..+++|+.+=.|++|.+.......                                 
T Consensus       283 ~D~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~---------------------------------  328 (609)
T KOG4227|consen  283 SDHNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPRANDSY---------------------------------  328 (609)
T ss_pred             ccCCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCCCcccc---------------------------------
Confidence            32    1111235778888765 448999999999999987643221                                 


Q ss_pred             CCCccccccc---ccCcccccccceEEEEeCCCceEEEEecCCCE-EEEEEeCCcEEEEEEe
Q 014977          331 PGSSLSFMRG---VLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNT-VVIVSMDGSFYRCSFD  388 (415)
Q Consensus       331 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~dg~~~~~~~~  388 (415)
                         .+..+++   .+|.-+--+..+.-.+-....+..+.|++.+. |+..|-+..+.+|+-.
T Consensus       329 ---G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~  387 (609)
T KOG4227|consen  329 ---GFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH  387 (609)
T ss_pred             ---CccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence               1111111   12221112233334444456667789999855 4555558999998643

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.77  E-value=1.8e-17  Score=148.42  Aligned_cols=214  Identities=12%  Similarity=0.148  Sum_probs=172.9

Q ss_pred             EEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCE
Q 014977           48 ISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRC  126 (415)
Q Consensus        48 ~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~  126 (415)
                      .|++......++++|+ .+.|+|||+..  +...+.+.+|...|.++.|+....++++++..     |.|.|..+.++..
T Consensus        83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~--kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~g-----Gdiiih~~~t~~~  155 (673)
T KOG4378|consen   83 FCVACASQSLYEISGGQSGCVKIWDLRA--KLIHRFLKDHQSTVTYVDYNNTDEYIASVSDG-----GDIIIHGTKTKQK  155 (673)
T ss_pred             HHHhhhhcceeeeccCcCceeeehhhHH--HHHhhhccCCcceeEEEEecCCcceeEEeccC-----CcEEEEecccCcc
Confidence            3444444447888888 99999999983  33444567899999999999999999999987     9999999999988


Q ss_pred             EEEEEc--cCceeEEEEcCCeEEEE----eCCeEEEEEcCCceeeeEE-eccCCCcceEEEecCCCceEEEEeCCccCeE
Q 014977          127 IGEFAF--RSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQI-ETLANLRGLCCLSHHSSTSVLACPGLQRGQV  199 (415)
Q Consensus       127 ~~~~~~--~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v  199 (415)
                      ..++.+  ...|+-+.|++..+.++    .+|.|.+||+....++..+ ..|..+..-+||++... .+|++. +.|..|
T Consensus       156 tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne-~l~vsV-G~Dkki  233 (673)
T KOG4378|consen  156 TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNE-ALLVSV-GYDKKI  233 (673)
T ss_pred             ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCcc-ceEEEe-cccceE
Confidence            888885  45677899999877766    6899999999877766555 66777777788887754 345554 489999


Q ss_pred             EEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC-cEEEEEecCCCcccEEEEEeCCCC
Q 014977          200 RIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG-TRLQEVRRGVDRAEIYSIALSPNV  273 (415)
Q Consensus       200 ~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~-~~~~~~~~~~~~~~v~~l~~spdg  273 (415)
                      .+++...+....-.....+...++|+++|.+|++|+..|. |..||++.. .++.++..  |...|++++|-|..
T Consensus       234 ~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~-~i~YD~R~~k~Pv~v~sa--h~~sVt~vafq~s~  305 (673)
T KOG4378|consen  234 NIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGE-LIAYDMRSTKAPVAVRSA--HDASVTRVAFQPSP  305 (673)
T ss_pred             EEeecccccccceeeecCCcceeeecCCceEEEeecCCce-EEEEecccCCCCceEeee--cccceeEEEeeecc
Confidence            9988887665555566789999999999999999999999 999999865 46777777  88889999998764

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.77  E-value=1.2e-16  Score=148.69  Aligned_cols=246  Identities=12%  Similarity=0.144  Sum_probs=182.1

Q ss_pred             ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEE--eccCCCeeEEEEeeeCCeEEEEecCCCCCCCCC
Q 014977           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRR--DLKSGGFRIVEMLFRCNILALVGAGDNSQYPPT  114 (415)
Q Consensus        38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~  114 (415)
                      ....||.+.|..++|+|.|.+|.+.+ |.+-|||-.-..+.....  .-+-|+-...++.+-+....++++.+.     .
T Consensus       355 ~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdE-----K  429 (764)
T KOG1063|consen  355 PVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADE-----K  429 (764)
T ss_pred             cccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccc-----e
Confidence            34689999999999999999999988 999999865422221111  012455556677777745556666665     6


Q ss_pred             eEEEEECCC-------------------------------------------CCE----E--------------------
Q 014977          115 KVIIWDDHQ-------------------------------------------SRC----I--------------------  127 (415)
Q Consensus       115 ~i~vwd~~~-------------------------------------------~~~----~--------------------  127 (415)
                      .+++++...                                           |..    .                    
T Consensus       430 VlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqL  509 (764)
T KOG1063|consen  430 VLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQL  509 (764)
T ss_pred             eeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHH
Confidence            777776320                                           100    0                    


Q ss_pred             ----------EEEEccCceeEEEEcCCeEEEE--------eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEE
Q 014977          128 ----------GEFAFRSDVRSVKLSRDRIVVV--------LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVL  189 (415)
Q Consensus       128 ----------~~~~~~~~i~~l~~~~~~~~~~--------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  189 (415)
                                +.+.|...|.+++.+|++++++        ....|++|+..+-..++.+..|.-  ++..+.++|++++|
T Consensus       510 q~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsL--TVT~l~FSpdg~~L  587 (764)
T KOG1063|consen  510 QQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSL--TVTRLAFSPDGRYL  587 (764)
T ss_pred             HHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccce--EEEEEEECCCCcEE
Confidence                      0012446799999999999999        245799999988888877887775  78888888899999


Q ss_pred             EEeCCccCeEEEEEcCCcc-----eEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC--cEEEEEecCCCcc
Q 014977          190 ACPGLQRGQVRIEHFGLNM-----IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG--TRLQEVRRGVDRA  262 (415)
Q Consensus       190 ~~~g~~dg~v~i~~~~~~~-----~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~--~~~~~~~~~~~~~  262 (415)
                      ++ .+.|+++.+|......     ....+.|..-|.++.|+|++.+++++|.|.+ |+||.....  +.+..+....+..
T Consensus       588 Ls-vsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~-VkVW~~~~~~d~~i~~~a~~~~~~  665 (764)
T KOG1063|consen  588 LS-VSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKK-VKVWEEPDLRDKYISRFACLKFSL  665 (764)
T ss_pred             EE-eecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCce-EEEEeccCchhhhhhhhchhccCC
Confidence            87 4589999998764322     2336789999999999999999999999999 999998877  5554433333677


Q ss_pred             cEEEEEeCC-----CCCEEEEEeCCCeEEEEEcee
Q 014977          263 EIYSIALSP-----NVQWLAVASDKGTVHIFSLRV  292 (415)
Q Consensus       263 ~v~~l~~sp-----dg~~l~s~s~dg~i~vwd~~~  292 (415)
                      .|+.++|.|     .+..+++|-..|.|.+|....
T Consensus       666 aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~  700 (764)
T KOG1063|consen  666 AVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKR  700 (764)
T ss_pred             ceeeEEeeccccccccceEEEEecccEEEEEeccc
Confidence            899999886     223778899999999999763

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.77  E-value=6.8e-17  Score=135.58  Aligned_cols=242  Identities=15%  Similarity=0.115  Sum_probs=177.7

Q ss_pred             CCCCCCceEEEEEeCCC-CEEEEEe----C----CcEEEEEccCC-c--------eeEEEeccCCCeeEEEEeeeCCeEE
Q 014977           40 SDVDEIELISVSWNQDY-GCFAAGT----S----CGFRIYNCEPF-K--------ETFRRDLKSGGFRIVEMLFRCNILA  101 (415)
Q Consensus        40 ~~~h~~~V~~l~~sp~g-~~la~g~----d----~~v~iw~~~~~-~--------~~~~~~~~~~~~~~~~~~~~~~~~~  101 (415)
                      ..-|.+.|+.++-+|.. +.|+++.    +    ..+.||.+... +        .+..... .+...+.++.|.|++..
T Consensus        59 f~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldt-eavg~i~cvew~Pns~k  137 (370)
T KOG1007|consen   59 FFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDT-EAVGKINCVEWEPNSDK  137 (370)
T ss_pred             hhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCH-HHhCceeeEEEcCCCCe
Confidence            34577899999999954 5666554    1    23679998531 1        1111111 33447889999999988


Q ss_pred             EEecCCCCCCCCCeEEEEECCCCCE-EEEEE------ccCceeEEEEcC--CeEEEE--eCCeEEEEEcCCceeeeEEe-
Q 014977          102 LVGAGDNSQYPPTKVIIWDDHQSRC-IGEFA------FRSDVRSVKLSR--DRIVVV--LEHKIYVYSFVDLKLLHQIE-  169 (415)
Q Consensus       102 l~s~~~d~~~~~~~i~vwd~~~~~~-~~~~~------~~~~i~~l~~~~--~~~~~~--~d~~i~iwd~~~~~~~~~~~-  169 (415)
                      +++-.+      ..|.+|++..+.. +..+.      +....++-+|+|  ++..++  .|+++..||+++.++...+. 
T Consensus       138 lasm~d------n~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~d  211 (370)
T KOG1007|consen  138 LASMDD------NNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIED  211 (370)
T ss_pred             eEEecc------CceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhh
Confidence            887654      8999999988765 44443      355677788887  677777  79999999999988776663 


Q ss_pred             ccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC--cceEEEecCccceEEEEeCCC-CCEEEEEeCCCcEEEEEEC
Q 014977          170 TLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL--NMIKLINAHDSHIACFTLTLD-GLLLATASTRGTLIRIFNT  246 (415)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~--~~~~~~~~~~~~i~~l~~sp~-g~~l~s~s~dg~~I~vwd~  246 (415)
                      .|..  .+..+.++|+...++++++.||.|+||+.+.  .+++.+.+|...+.++.|+|. .++|++++.|.. |.+|..
T Consensus       212 AHgq--~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~-V~Lsca  288 (370)
T KOG1007|consen  212 AHGQ--RVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSA-VNLSCA  288 (370)
T ss_pred             hhcc--eeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCce-eEEEec
Confidence            4444  5667777777777777888999999999775  568889999999999999995 468889999999 999864


Q ss_pred             CCC-----------------------------cEEEEEecCCCcccEEEEEeCCCCC-EEEEEeCCCeEEEEEceec
Q 014977          247 VDG-----------------------------TRLQEVRRGVDRAEIYSIALSPNVQ-WLAVASDKGTVHIFSLRVR  293 (415)
Q Consensus       247 ~~~-----------------------------~~~~~~~~~~~~~~v~~l~~spdg~-~l~s~s~dg~i~vwd~~~~  293 (415)
                      .+-                             ..+.++..  |...|.+++||.-.. .+|+-+.||.+.|=.+...
T Consensus       289 ~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyde--hEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r~  363 (370)
T KOG1007|consen  289 SSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDE--HEDSVYALAWSSADPWIFASLSYDGRVIISSVPRF  363 (370)
T ss_pred             cccccccccccccccccCcchhhHHhcccccccccccccc--cccceEEEeeccCCCeeEEEeccCceEEeecCChh
Confidence            321                             12234444  778999999997555 5678899999988665543

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.76  E-value=2.7e-17  Score=136.26  Aligned_cols=237  Identities=14%  Similarity=0.145  Sum_probs=162.0

Q ss_pred             CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEE
Q 014977           40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII  118 (415)
Q Consensus        40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~v  118 (415)
                      .++|.+.|+++.|-.+++ |.+|. .|.|++|.+.+........+ .+...+..+..-++ ..+.+-+.|     ..+.+
T Consensus        10 LRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~-~g~~~it~lq~~p~-d~l~tqgRd-----~~L~l   81 (323)
T KOG0322|consen   10 LRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRL-FGRLFITNLQSIPN-DSLDTQGRD-----PLLIL   81 (323)
T ss_pred             eccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhh-hccceeeceeecCC-cchhhcCCC-----ceEEE
Confidence            558999999999998877 66777 99999999988665544332 45566666666666 445555665     88888


Q ss_pred             EECCCCCEEEEEE------------------------------------------------------ccCceeEEEEcC-
Q 014977          119 WDDHQSRCIGEFA------------------------------------------------------FRSDVRSVKLSR-  143 (415)
Q Consensus       119 wd~~~~~~~~~~~------------------------------------------------------~~~~i~~l~~~~-  143 (415)
                      |++.-+..+..-.                                                      ..+.+.+..+.. 
T Consensus        82 w~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~  161 (323)
T KOG0322|consen   82 WTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHA  161 (323)
T ss_pred             EEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccc
Confidence            8865432211100                                                      002233333221 


Q ss_pred             CeE-EEE----eCCeEEEEEcCCceeee----------EEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCc-
Q 014977          144 DRI-VVV----LEHKIYVYSFVDLKLLH----------QIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN-  207 (415)
Q Consensus       144 ~~~-~~~----~d~~i~iwd~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~-  207 (415)
                      .+. .++    .+|.+.+||+.++..+-          ....|..++..+.++..-++-  + +|+.+..+..|..+.. 
T Consensus       162 c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rG--i-sgga~dkl~~~Sl~~s~  238 (323)
T KOG0322|consen  162 CGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRG--I-SGGADDKLVMYSLNHST  238 (323)
T ss_pred             ccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCC--c-CCCccccceeeeecccc
Confidence            122 222    68999999998874332          233455544444444332221  1 3445555555554432 


Q ss_pred             ----ceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCC
Q 014977          208 ----MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKG  283 (415)
Q Consensus       208 ----~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg  283 (415)
                          ....+...+-.+..+.+-||++.+|+++.|+. ||||..++..++..++.  |.+.|++++|+|+...+|+++.|+
T Consensus       239 gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~R-iRVyswrtl~pLAVLky--Hsagvn~vAfspd~~lmAaaskD~  315 (323)
T KOG0322|consen  239 GSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHR-IRVYSWRTLNPLAVLKY--HSAGVNAVAFSPDCELMAAASKDA  315 (323)
T ss_pred             CcccccceEEecCCCccceEEccCCcEEeecccCCc-EEEEEeccCCchhhhhh--hhcceeEEEeCCCCchhhhccCCc
Confidence                22233344567888999999999999999999 99999999999999998  889999999999999999999999


Q ss_pred             eEEEEEc
Q 014977          284 TVHIFSL  290 (415)
Q Consensus       284 ~i~vwd~  290 (415)
                      +|.+|++
T Consensus       316 rISLWkL  322 (323)
T KOG0322|consen  316 RISLWKL  322 (323)
T ss_pred             eEEeeec
Confidence            9999996

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.76  E-value=1.8e-17  Score=152.51  Aligned_cols=100  Identities=21%  Similarity=0.328  Sum_probs=88.3

Q ss_pred             CccCeEEEEEcCC--------cceEEEecCccceEEEEeCCC-CCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccE
Q 014977          194 LQRGQVRIEHFGL--------NMIKLINAHDSHIACFTLTLD-GLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEI  264 (415)
Q Consensus       194 ~~dg~v~i~~~~~--------~~~~~~~~~~~~i~~l~~sp~-g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v  264 (415)
                      .+||.|++|....        .+...++.|...|+++.|+|- ...|++++.|.+ |++||+.+++....+.+  |...|
T Consensus       647 ~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~T-i~lWDl~~~~~~~~l~g--HtdqI  723 (1012)
T KOG1445|consen  647 TDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDST-IELWDLANAKLYSRLVG--HTDQI  723 (1012)
T ss_pred             ccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccce-eeeeehhhhhhhheecc--CcCce
Confidence            3788888887653        445678899999999999994 457999999999 99999999999889998  88999


Q ss_pred             EEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977          265 YSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       265 ~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                      .+++|||||+.+|+.+.||+|+||+-++++..
T Consensus       724 f~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~p  755 (1012)
T KOG1445|consen  724 FGIAWSPDGRRIATVCKDGTLRVYEPRSREQP  755 (1012)
T ss_pred             eEEEECCCCcceeeeecCceEEEeCCCCCCCc
Confidence            99999999999999999999999998887653

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=8.7e-17  Score=136.50  Aligned_cols=193  Identities=13%  Similarity=0.108  Sum_probs=151.5

Q ss_pred             EEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceee
Q 014977           90 IVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLL  165 (415)
Q Consensus        90 ~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~  165 (415)
                      ..++.|++.|.+++.|..+     |.|.+||+.+...-+.+. |-.+|.+++|+++|+.++   .|..|.+||+..|.++
T Consensus        26 a~~~~Fs~~G~~lAvGc~n-----G~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l  100 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCAN-----GRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPL  100 (405)
T ss_pred             cceEEeccCcceeeeeccC-----CcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCce
Confidence            6788999999999999988     999999999988777777 999999999999999998   6999999999999999


Q ss_pred             eEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEecC-c----cceEEEEeCCCCCEEEEEeCCCcE
Q 014977          166 HQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAH-D----SHIACFTLTLDGLLLATASTRGTL  240 (415)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~-~----~~i~~l~~sp~g~~l~s~s~dg~~  240 (415)
                      +.+.- ..++....+++..++..+++--  +..-.+-......-..+... .    ....+..|.+.|+++++|...|. 
T Consensus       101 ~rirf-~spv~~~q~hp~k~n~~va~~~--~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGk-  176 (405)
T KOG1273|consen  101 KRIRF-DSPVWGAQWHPRKRNKCVATIM--EESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGK-  176 (405)
T ss_pred             eEEEc-cCccceeeeccccCCeEEEEEe--cCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcce-
Confidence            88864 4567778888887777776532  22222211111111111111 1    11223358899999999999999 


Q ss_pred             EEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEcee
Q 014977          241 IRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV  292 (415)
Q Consensus       241 I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~  292 (415)
                      +.++|..+.+++..++.. ....|..+.|+..|++|+.-+.|..|+.|+++.
T Consensus       177 llv~~a~t~e~vas~rit-s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~d  227 (405)
T KOG1273|consen  177 LLVYDAETLECVASFRIT-SVQAIKQIIVSRKGRFLIINTSDRVIRTYEISD  227 (405)
T ss_pred             EEEEecchheeeeeeeec-hheeeeEEEEeccCcEEEEecCCceEEEEehhh
Confidence            999999999999888863 236799999999999999999999999999874

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.76  E-value=2e-16  Score=138.58  Aligned_cols=252  Identities=16%  Similarity=0.125  Sum_probs=179.1

Q ss_pred             CccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEcc--------C------CceeEEEeccCCCeeEEEEeeeCCeEE
Q 014977           37 TAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCE--------P------FKETFRRDLKSGGFRIVEMLFRCNILA  101 (415)
Q Consensus        37 ~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~--------~------~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (415)
                      ......|..+|+++.|+|+|.+||+|+ +|.|.+|...        +      ...+..+.+.+|...+..++|.+++.+
T Consensus        58 ~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~  137 (434)
T KOG1009|consen   58 LSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNF  137 (434)
T ss_pred             eecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCce
Confidence            345688999999999999999999999 8899999876        2      112334455678889999999999999


Q ss_pred             EEecCCCCCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEe--------
Q 014977          102 LVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIE--------  169 (415)
Q Consensus       102 l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~--------  169 (415)
                      +++++-|     +.+++||+..|+.+..+. |...+..++|.|-+++++   .|...+++.+...+.++...        
T Consensus       138 l~s~s~d-----ns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~  212 (434)
T KOG1009|consen  138 LVSGSVD-----NSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKA  212 (434)
T ss_pred             eeeeecc-----ceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecc
Confidence            9999988     999999999999999887 999999999999999888   46656666654332222111        


Q ss_pred             -------------ccCCCcceEEEecCCCceEEEEeCC---ccCeE--EE-EEcCC----cceEEEecCccceEEEEeCC
Q 014977          170 -------------TLANLRGLCCLSHHSSTSVLACPGL---QRGQV--RI-EHFGL----NMIKLINAHDSHIACFTLTL  226 (415)
Q Consensus       170 -------------~~~~~~~~~~~~~~~~~~~l~~~g~---~dg~v--~i-~~~~~----~~~~~~~~~~~~i~~l~~sp  226 (415)
                                   ...-......+++.|+|.+++..+.   ..+.+  .. +..+.    ++...+..-..+...+.|+|
T Consensus       213 ~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~p  292 (434)
T KOG1009|consen  213 FNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSP  292 (434)
T ss_pred             cCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeee
Confidence                         0011112334566778877765321   11122  11 22222    23333334444444555443


Q ss_pred             ------------------CCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEE
Q 014977          227 ------------------DGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIF  288 (415)
Q Consensus       227 ------------------~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vw  288 (415)
                                        .+..+|.++.+ . |+|||.++-.++..+..- |-..|++++|++||..|+..+.||...+-
T Consensus       293 Vy~elrp~~~~~~~~~lpyrlvfaiAt~~-s-vyvydtq~~~P~~~v~ni-hy~~iTDiaws~dg~~l~vSS~DGyCS~v  369 (434)
T KOG1009|consen  293 VYYELRPLSSEKFLFVLPYRLVFAIATKN-S-VYVYDTQTLEPLAVVDNI-HYSAITDIAWSDDGSVLLVSSTDGFCSLV  369 (434)
T ss_pred             eEEEeccccccccccccccceEEEEeecc-e-EEEeccccccceEEEeee-eeeeecceeecCCCcEEEEeccCCceEEE
Confidence                              33446666655 5 999999998888777654 77799999999999999999999988888


Q ss_pred             EceecccC
Q 014977          289 SLRVRVVG  296 (415)
Q Consensus       289 d~~~~~~~  296 (415)
                      -++..+-+
T Consensus       370 tfe~~elg  377 (434)
T KOG1009|consen  370 TFEPWELG  377 (434)
T ss_pred             EEcchhcc
Confidence            88776654

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.74  E-value=1.7e-14  Score=133.37  Aligned_cols=221  Identities=11%  Similarity=0.102  Sum_probs=142.7

Q ss_pred             CCcEEEEEccCCce-eEEEeccCCCeeEEEEeeeCCeEEEEec-CCCCCCCCCeEEEEECC-CCCE--EEEEEccCceeE
Q 014977           64 SCGFRIYNCEPFKE-TFRRDLKSGGFRIVEMLFRCNILALVGA-GDNSQYPPTKVIIWDDH-QSRC--IGEFAFRSDVRS  138 (415)
Q Consensus        64 d~~v~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~d~~~~~~~i~vwd~~-~~~~--~~~~~~~~~i~~  138 (415)
                      ++.|.+|++.+.+. .....+ ........+.++|++..|..+ ..+     +.|.+|++. +++.  +...........
T Consensus        11 ~~~I~~~~~~~~g~l~~~~~~-~~~~~~~~l~~spd~~~lyv~~~~~-----~~i~~~~~~~~g~l~~~~~~~~~~~p~~   84 (330)
T PRK11028         11 SQQIHVWNLNHEGALTLLQVV-DVPGQVQPMVISPDKRHLYVGVRPE-----FRVLSYRIADDGALTFAAESPLPGSPTH   84 (330)
T ss_pred             CCCEEEEEECCCCceeeeeEE-ecCCCCccEEECCCCCEEEEEECCC-----CcEEEEEECCCCceEEeeeecCCCCceE
Confidence            99999999974322 222333 223345567889988765443 333     899999986 3433  223334456778


Q ss_pred             EEEcCCeEEEE----eCCeEEEEEcCC-ce---eeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC-cce
Q 014977          139 VKLSRDRIVVV----LEHKIYVYSFVD-LK---LLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMI  209 (415)
Q Consensus       139 l~~~~~~~~~~----~d~~i~iwd~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~-~~~  209 (415)
                      +.++|++++++    .++.|.+|++.+ +.   .+..+....   ....+.++|++++++++...++.|.+|+.+. ..+
T Consensus        85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~---~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l  161 (330)
T PRK11028         85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLE---GCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHL  161 (330)
T ss_pred             EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCC---cccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcc
Confidence            99999998776    478999999963 32   222222212   2334455667777777677889999988754 211


Q ss_pred             E-----EEe-cCccceEEEEeCCCCCEEEEEeC-CCcEEEEEECCC--Cc--EEEEEecCC----CcccEEEEEeCCCCC
Q 014977          210 K-----LIN-AHDSHIACFTLTLDGLLLATAST-RGTLIRIFNTVD--GT--RLQEVRRGV----DRAEIYSIALSPNVQ  274 (415)
Q Consensus       210 ~-----~~~-~~~~~i~~l~~sp~g~~l~s~s~-dg~~I~vwd~~~--~~--~~~~~~~~~----~~~~v~~l~~spdg~  274 (415)
                      .     ... ........++|+|+|++|++++. ++. |.+||+..  ++  .+..+....    +......+.|+|+|+
T Consensus       162 ~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~-v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~  240 (330)
T PRK11028        162 VAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSS-VDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGR  240 (330)
T ss_pred             cccCCCceecCCCCCCceEEECCCCCEEEEEecCCCE-EEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCC
Confidence            1     111 12334578999999999988877 777 99999973  33  233333210    111234688999999


Q ss_pred             EEEEEeC-CCeEEEEEceecc
Q 014977          275 WLAVASD-KGTVHIFSLRVRV  294 (415)
Q Consensus       275 ~l~s~s~-dg~i~vwd~~~~~  294 (415)
                      +|+++.. ++.|.+|+++...
T Consensus       241 ~lyv~~~~~~~I~v~~i~~~~  261 (330)
T PRK11028        241 HLYACDRTASLISVFSVSEDG  261 (330)
T ss_pred             EEEEecCCCCeEEEEEEeCCC
Confidence            9998854 6899999997643

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.74  E-value=2.2e-15  Score=127.74  Aligned_cols=200  Identities=18%  Similarity=0.248  Sum_probs=146.2

Q ss_pred             CCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCC----EEEEEE-ccCceeEEEEcCC--eEEEE---eCCeE
Q 014977           85 SGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR----CIGEFA-FRSDVRSVKLSRD--RIVVV---LEHKI  154 (415)
Q Consensus        85 ~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~----~~~~~~-~~~~i~~l~~~~~--~~~~~---~d~~i  154 (415)
                      +|..-+.++.|+.-|..+++++.|     ++|+|||.+...    +....+ |.+.|..+.|.+-  |+.++   .|+++
T Consensus        11 ~h~DlihdVs~D~~GRRmAtCSsD-----q~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv   85 (361)
T KOG2445|consen   11 GHKDLIHDVSFDFYGRRMATCSSD-----QTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTV   85 (361)
T ss_pred             CCcceeeeeeecccCceeeeccCC-----CcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCce
Confidence            566778899999999999999998     999999965432    333344 8999999999653  67776   79999


Q ss_pred             EEEEcCC---------ceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC-------cceEEE------
Q 014977          155 YVYSFVD---------LKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-------NMIKLI------  212 (415)
Q Consensus       155 ~iwd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~-------~~~~~~------  212 (415)
                      .||.=..         -....++......+.-++|+|..-|..||+ ++.||.++|+....       .....+      
T Consensus        86 ~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~-~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~p  164 (361)
T KOG2445|consen   86 SIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAA-ASADGILRIYEAPDPMNLSQWTLQHEIQNVIDP  164 (361)
T ss_pred             eeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEE-eccCcEEEEEecCCccccccchhhhhhhhccCC
Confidence            9998411         112334444555567778888888888876 66899999965432       111112      


Q ss_pred             -ecCccceEEEEeCCC---CCEEEEEeCC-----CcEEEEEECCCCc----EEEEEecCCCcccEEEEEeCCCC----CE
Q 014977          213 -NAHDSHIACFTLTLD---GLLLATASTR-----GTLIRIFNTVDGT----RLQEVRRGVDRAEIYSIALSPNV----QW  275 (415)
Q Consensus       213 -~~~~~~i~~l~~sp~---g~~l~s~s~d-----g~~I~vwd~~~~~----~~~~~~~~~~~~~v~~l~~spdg----~~  275 (415)
                       ..+..+..|+.|+|.   ..+||.|+.+     +. ++||....+.    .+.++.+  |..+|++|+|.|+-    .+
T Consensus       165 p~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~-~~Iye~~e~~rKw~kva~L~d--~~dpI~di~wAPn~Gr~y~~  241 (361)
T KOG2445|consen  165 PGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNK-VKIYEYNENGRKWLKVAELPD--HTDPIRDISWAPNIGRSYHL  241 (361)
T ss_pred             cccccCcceEEeeccccccCceEEEEcccCCccccc-eEEEEecCCcceeeeehhcCC--CCCcceeeeeccccCCceee
Confidence             246677889999974   3578888876     35 8888765432    3445665  88899999999952    47


Q ss_pred             EEEEeCCCeEEEEEceecc
Q 014977          276 LAVASDKGTVHIFSLRVRV  294 (415)
Q Consensus       276 l~s~s~dg~i~vwd~~~~~  294 (415)
                      ||+++.|| |+||+++...
T Consensus       242 lAvA~kDg-v~I~~v~~~~  259 (361)
T KOG2445|consen  242 LAVATKDG-VRIFKVKVAR  259 (361)
T ss_pred             EEEeecCc-EEEEEEeecc
Confidence            99999999 9999998754

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.74  E-value=1e-16  Score=148.42  Aligned_cols=241  Identities=17%  Similarity=0.199  Sum_probs=185.0

Q ss_pred             CCccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCC
Q 014977           36 QTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPT  114 (415)
Q Consensus        36 ~~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~  114 (415)
                      +.+...+|++.|++++|+.||+++|+|+ |..|.||+-.-.+ .++  . .|...+.+|.|+|-...+++++-      .
T Consensus        45 llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG-~Lk--Y-SH~D~IQCMsFNP~~h~LasCsL------s  114 (1081)
T KOG1538|consen   45 LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-ILK--Y-SHNDAIQCMSFNPITHQLASCSL------S  114 (1081)
T ss_pred             cccccccccceEEEEEEccCCceeccCCCceeEEEecccccc-eee--e-ccCCeeeEeecCchHHHhhhcch------h
Confidence            4567899999999999999999999999 9999999865422 232  2 68889999999999999999876      6


Q ss_pred             eEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEec---cCCCcceEEEecCCC---
Q 014977          115 KVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIET---LANLRGLCCLSHHSS---  185 (415)
Q Consensus       115 ~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~---  185 (415)
                      ..-+|.... +.+...+....+.+.+|..||.+++   .+|+|.+-+- +++....++.   ...++..++++++..   
T Consensus       115 dFglWS~~q-K~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~  192 (1081)
T KOG1538|consen  115 DFGLWSPEQ-KSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGR  192 (1081)
T ss_pred             hccccChhh-hhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCc
Confidence            778898543 3444455667889999999999998   7999999874 4444444433   445556666665432   


Q ss_pred             ceEEEEeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEE
Q 014977          186 TSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIY  265 (415)
Q Consensus       186 ~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~  265 (415)
                      ...+++ .....++.++..+++.+..-+.-.-...|+.+-++|.++..|+.|+. +.+|- +.|-.+.++..  ....|+
T Consensus       193 ~di~aV-~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~-L~~fT-R~GvrLGTvg~--~D~WIW  267 (1081)
T KOG1538|consen  193 NDILAV-ADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQ-LSLFT-RDGVRLGTVGE--QDSWIW  267 (1081)
T ss_pred             cceEEE-EeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCc-eEEEe-ecCeEEeeccc--cceeEE
Confidence            123333 34555666666666666554455556678999999999999999999 99995 68888888766  667999


Q ss_pred             EEEeCCCCCEEEEEeCCCeEEEEEceec
Q 014977          266 SIALSPNVQWLAVASDKGTVHIFSLRVR  293 (415)
Q Consensus       266 ~l~~spdg~~l~s~s~dg~i~vwd~~~~  293 (415)
                      .++..|++++++.|+.||+|--|++-..
T Consensus       268 tV~~~PNsQ~v~~GCqDGTiACyNl~fS  295 (1081)
T KOG1538|consen  268 TVQAKPNSQYVVVGCQDGTIACYNLIFS  295 (1081)
T ss_pred             EEEEccCCceEEEEEccCeeehhhhHHh
Confidence            9999999999999999999999987543

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.73  E-value=1.9e-15  Score=133.99  Aligned_cols=236  Identities=10%  Similarity=0.046  Sum_probs=161.7

Q ss_pred             eEEEEEeCCCCEEEEEe--CC--cEEEEEccCCc-eeEEEeccCCCee----EEEEeee-------CCeEEEEecCCCCC
Q 014977           47 LISVSWNQDYGCFAAGT--SC--GFRIYNCEPFK-ETFRRDLKSGGFR----IVEMLFR-------CNILALVGAGDNSQ  110 (415)
Q Consensus        47 V~~l~~sp~g~~la~g~--d~--~v~iw~~~~~~-~~~~~~~~~~~~~----~~~~~~~-------~~~~~l~s~~~d~~  110 (415)
                      .-.+..-|+..+++++.  ++  .+.+|-.+... ..+.    .|..-    ..|+.|.       ..+.++|.|..+  
T Consensus       128 ~de~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~nlYv----HHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmd--  201 (463)
T KOG0270|consen  128 KDEEQVKPSDNLILCARNEDDVSYLEVYVYNEEEENLYV----HHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMD--  201 (463)
T ss_pred             cccceeccCCcEEEEeeccCCceEEEEEEEcCCCcceeE----ecceeccCcchhhhhhhcCCCCCCCcceEEEeccC--
Confidence            34556678777888877  32  34444444322 2221    12211    1222322       236788888887  


Q ss_pred             CCCCeEEEEECCCC---CEEEEE-------------------EccCceeEEEEcCCeEEEE----eCCeEEEEEcCCcee
Q 014977          111 YPPTKVIIWDDHQS---RCIGEF-------------------AFRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKL  164 (415)
Q Consensus       111 ~~~~~i~vwd~~~~---~~~~~~-------------------~~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~  164 (415)
                         ..|.|||+.--   .+..++                   .|...|.++.|+..-+.++    .|.+|++||+.++++
T Consensus       202 ---p~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p  278 (463)
T KOG0270|consen  202 ---PEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKP  278 (463)
T ss_pred             ---ceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCc
Confidence               89999996421   111111                   1667788889988765555    699999999999999


Q ss_pred             eeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCC-EEEEEeCCCcEEE
Q 014977          165 LHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGL-LLATASTRGTLIR  242 (415)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~-~l~s~s~dg~~I~  242 (415)
                      ...+..|...+..+.|.+.  ...++.+|+.|++|.+.+.+. ......-.-.+.|-.++|.|... .++++..||. |+
T Consensus       279 ~~s~~~~~k~Vq~l~wh~~--~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~-v~  355 (463)
T KOG0270|consen  279 KSSITHHGKKVQTLEWHPY--EPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGT-VY  355 (463)
T ss_pred             ceehhhcCCceeEEEecCC--CceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCce-EE
Confidence            9999888885555555544  434445699999999955542 22222222357788999999765 5667778899 99


Q ss_pred             EEECCCC-cEEEEEecCCCcccEEEEEeCCCC-CEEEEEeCCCeEEEEEceecccC
Q 014977          243 IFNTVDG-TRLQEVRRGVDRAEIYSIALSPNV-QWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       243 vwd~~~~-~~~~~~~~~~~~~~v~~l~~spdg-~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                      -+|++.. +++.+++.  |.++|.+|++++.- .+|++++.|+.|++|++......
T Consensus       356 ~~D~R~~~~~vwt~~A--Hd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~  409 (463)
T KOG0270|consen  356 YFDIRNPGKPVWTLKA--HDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK  409 (463)
T ss_pred             eeecCCCCCceeEEEe--ccCCcceEEecCCCCcceeeccccceEEEEeecCCCCc
Confidence            9999865 88999998  88999999998754 57889999999999999876543

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.73  E-value=6.5e-14  Score=133.02  Aligned_cols=246  Identities=18%  Similarity=0.297  Sum_probs=185.8

Q ss_pred             cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCc-eeEEEeccCCCeeEEEEee-eCCeE-EEEecCC-CCCCCC
Q 014977           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFK-ETFRRDLKSGGFRIVEMLF-RCNIL-ALVGAGD-NSQYPP  113 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~-~l~s~~~-d~~~~~  113 (415)
                      ....|...|..+.|.+.+..++.++ ++.+.+|+..... ....... .+...+..+.. .+++. .++..+. +     
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d-----  133 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEG-LHDSSVSKLALSSPDGNSILLASSSLD-----  133 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEec-cCCCceeeEEEECCCcceEEeccCCCC-----
Confidence            4578999999999999999999998 9999999998754 2222221 12123444444 66665 4444333 5     


Q ss_pred             CeEEEEECCC-CCEEEEEE-ccCceeEEEEcCCeEEEE---e-CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCce
Q 014977          114 TKVIIWDDHQ-SRCIGEFA-FRSDVRSVKLSRDRIVVV---L-EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS  187 (415)
Q Consensus       114 ~~i~vwd~~~-~~~~~~~~-~~~~i~~l~~~~~~~~~~---~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (415)
                      +.+.+|+... ......+. |...|..+.|+|++..++   . ++.+++|++..++.+..+..|...+..+.+.  +++.
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~  211 (466)
T COG2319         134 GTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFS--PDGG  211 (466)
T ss_pred             ccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEc--CCcc
Confidence            8999999887 66666665 889999999999997665   3 8999999999888888888877755555555  6665


Q ss_pred             EEEEeCCccCeEEEEEcCC-cceE-EEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcE-EEEEecCCCcccE
Q 014977          188 VLACPGLQRGQVRIEHFGL-NMIK-LINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR-LQEVRRGVDRAEI  264 (415)
Q Consensus       188 ~l~~~g~~dg~v~i~~~~~-~~~~-~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~-~~~~~~~~~~~~v  264 (415)
                      .++.+++.|+.|++|+... .... .+..|.... ...|+|++.++++++.|+. +++|++..... +..+..  |...+
T Consensus       212 ~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~--~~~~v  287 (466)
T COG2319         212 LLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGT-IRLWDLRSSSSLLRTLSG--HSSSV  287 (466)
T ss_pred             eEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCc-EEEeeecCCCcEEEEEec--CCccE
Confidence            4444457899999997663 3444 477777775 4489999989999999999 99999987765 444433  67799


Q ss_pred             EEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977          265 YSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       265 ~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                      .++.|+|++..+++++.|+.+.+|++.+....
T Consensus       288 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  319 (466)
T COG2319         288 LSVAFSPDGKLLASGSSDGTVRLWDLETGKLL  319 (466)
T ss_pred             EEEEECCCCCEEEEeeCCCcEEEEEcCCCceE
Confidence            99999999898888999999999988777643

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.73  E-value=5.5e-15  Score=136.73  Aligned_cols=240  Identities=12%  Similarity=0.075  Sum_probs=156.8

Q ss_pred             CCCceEEEEEeCCCCEEEEEe--CCcEEEEEccCCce-eEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEE
Q 014977           43 DEIELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKE-TFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIW  119 (415)
Q Consensus        43 h~~~V~~l~~sp~g~~la~g~--d~~v~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vw  119 (415)
                      +.+....++++|++++|+++.  ++.|.+|+++.... ...... ........+.+++++..++++..    .++.|.+|
T Consensus        33 ~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p~~i~~~~~g~~l~v~~~----~~~~v~v~  107 (330)
T PRK11028         33 VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSPTHISTDHQGRFLFSASY----NANCVSVS  107 (330)
T ss_pred             cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCceEEEECCCCCEEEEEEc----CCCeEEEE
Confidence            345677899999999998776  88999999973222 222222 12224567889999876666543    13899999


Q ss_pred             ECCC-C---CEEEEEEccCceeEEEEcCCeEEEE----eCCeEEEEEcCCceeeeE-----EeccCCCcceEEEecCCCc
Q 014977          120 DDHQ-S---RCIGEFAFRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQ-----IETLANLRGLCCLSHHSST  186 (415)
Q Consensus       120 d~~~-~---~~~~~~~~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~  186 (415)
                      ++.+ +   +.+..+.+......++++|++++++    .++.|.+||+.+...+..     ..... ......+.+++++
T Consensus       108 ~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg  186 (330)
T PRK11028        108 PLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQ  186 (330)
T ss_pred             EECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCC
Confidence            9864 3   2233333445577889999987775    579999999976332211     11111 1123455666777


Q ss_pred             eEEEEeCCccCeEEEEEcCC-----cceEEEecC------ccceEEEEeCCCCCEEEEEeC-CCcEEEEEECCCCc----
Q 014977          187 SVLACPGLQRGQVRIEHFGL-----NMIKLINAH------DSHIACFTLTLDGLLLATAST-RGTLIRIFNTVDGT----  250 (415)
Q Consensus       187 ~~l~~~g~~dg~v~i~~~~~-----~~~~~~~~~------~~~i~~l~~sp~g~~l~s~s~-dg~~I~vwd~~~~~----  250 (415)
                      ++++++...++.|.+|+.+.     +.+..+..+      ......+.++|+|++|+++.. ++. |.+|++....    
T Consensus       187 ~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~-I~v~~i~~~~~~~~  265 (330)
T PRK11028        187 QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASL-ISVFSVSEDGSVLS  265 (330)
T ss_pred             CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCe-EEEEEEeCCCCeEE
Confidence            78777655689999987752     122333221      112346889999999998865 566 9999986443    


Q ss_pred             EEEEEecCCCcccEEEEEeCCCCCEEEEEeC-CCeEEEEEcee
Q 014977          251 RLQEVRRGVDRAEIYSIALSPNVQWLAVASD-KGTVHIFSLRV  292 (415)
Q Consensus       251 ~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd~~~  292 (415)
                      .+..+..   ......+.|+|||++|+++.. +++|.+|+++.
T Consensus       266 ~~~~~~~---~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~  305 (330)
T PRK11028        266 FEGHQPT---ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG  305 (330)
T ss_pred             EeEEEec---cccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence            2222222   124567899999999998775 88999999864

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.71  E-value=4.4e-16  Score=142.65  Aligned_cols=206  Identities=16%  Similarity=0.172  Sum_probs=153.8

Q ss_pred             EEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE----eCCeE
Q 014977           79 FRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV----LEHKI  154 (415)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~----~d~~i  154 (415)
                      ....+.+|...+.++...+.|..|++|++|     |+|+||.+.+|.+++++...+.|.+++|+|....-+    .+..+
T Consensus       392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdD-----GtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~  466 (733)
T KOG0650|consen  392 CALVYRGHTGLVRSISVDPSGEWLASGSDD-----GTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECV  466 (733)
T ss_pred             eeeeEeccCCeEEEEEecCCcceeeecCCC-----CcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCce
Confidence            334456899999999999999999999998     999999999999999999999999999999754322    34444


Q ss_pred             EEEEcCCce---------e----------------------------eeEEeccCCCcceEEEecCCCceEEEEeCCccC
Q 014977          155 YVYSFVDLK---------L----------------------------LHQIETLANLRGLCCLSHHSSTSVLACPGLQRG  197 (415)
Q Consensus       155 ~iwd~~~~~---------~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg  197 (415)
                      .|.+..-|.         .                            +...-.|..  .+..+.|+..|.+|+++...++
T Consensus       467 ~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k--~i~~vtWHrkGDYlatV~~~~~  544 (733)
T KOG0650|consen  467 LIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPK--SIRQVTWHRKGDYLATVMPDSG  544 (733)
T ss_pred             EEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCC--ccceeeeecCCceEEEeccCCC
Confidence            444431110         0                            011111222  4456677788888887664443


Q ss_pred             --eEEEEEcCCcc-eEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCC
Q 014977          198 --QVRIEHFGLNM-IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQ  274 (415)
Q Consensus       198 --~v~i~~~~~~~-~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~  274 (415)
                        .|.|..+.... ...|....+.+.++.|+|...+|++++.. . |+|||+...+.++++..  ....|..++.+|.|.
T Consensus       545 ~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~-~-vRiYdL~kqelvKkL~t--g~kwiS~msihp~GD  620 (733)
T KOG0650|consen  545 NKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQR-S-VRIYDLSKQELVKKLLT--GSKWISSMSIHPNGD  620 (733)
T ss_pred             cceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEecc-c-eEEEehhHHHHHHHHhc--CCeeeeeeeecCCCC
Confidence              45555544433 33455567889999999999998888865 4 99999988877777766  455899999999999


Q ss_pred             EEEEEeCCCeEEEEEceeccc
Q 014977          275 WLAVASDKGTVHIFSLRVRVV  295 (415)
Q Consensus       275 ~l~s~s~dg~i~vwd~~~~~~  295 (415)
                      -|+.++.|+.+..||++-..+
T Consensus       621 nli~gs~d~k~~WfDldlssk  641 (733)
T KOG0650|consen  621 NLILGSYDKKMCWFDLDLSSK  641 (733)
T ss_pred             eEEEecCCCeeEEEEcccCcc
Confidence            999999999999999987654

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.70  E-value=1.3e-14  Score=127.43  Aligned_cols=285  Identities=16%  Similarity=0.189  Sum_probs=187.6

Q ss_pred             CCCceEEEEEeCCCC-EEEEEe-CCcEEEEEccCC-------ceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCC
Q 014977           43 DEIELISVSWNQDYG-CFAAGT-SCGFRIYNCEPF-------KETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPP  113 (415)
Q Consensus        43 h~~~V~~l~~sp~g~-~la~g~-d~~v~iw~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~  113 (415)
                      ...+|..+.|.++.. .||+|+ |..|+||.++..       ...+...+..|...+..+.|++++.++++|+++     
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~-----   86 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDG-----   86 (434)
T ss_pred             CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCC-----
Confidence            456899999999877 999999 999999988632       223344567889999999999999999999998     


Q ss_pred             CeEEEEECC--------C-----C---CEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCC
Q 014977          114 TKVIIWDDH--------Q-----S---RCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLAN  173 (415)
Q Consensus       114 ~~i~vwd~~--------~-----~---~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~  173 (415)
                      +.|.+|...        +     .   ...+.+. |...|..++|+|++.+++   .|+.+++||+..|+.+..+..|.+
T Consensus        87 g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~  166 (434)
T KOG1009|consen   87 GEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEH  166 (434)
T ss_pred             ceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccc
Confidence            999999855        2     1   1112222 789999999999999988   799999999999999999998887


Q ss_pred             CcceEEEecCCCceEEEEeCCccCeEEEEEcC----CcceE------------------EEe--cCccceEEEEeCCCCC
Q 014977          174 LRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG----LNMIK------------------LIN--AHDSHIACFTLTLDGL  229 (415)
Q Consensus       174 ~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~----~~~~~------------------~~~--~~~~~i~~l~~sp~g~  229 (415)
                        .+..++|+|-+++++.-+ .|...+.....    ...+.                  .+.  .-..-...++|+|+|.
T Consensus       167 --yvqgvawDpl~qyv~s~s-~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~  243 (434)
T KOG1009|consen  167 --YVQGVAWDPLNQYVASKS-SDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGS  243 (434)
T ss_pred             --ccceeecchhhhhhhhhc-cCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCc
Confidence              455566666677776533 44433332211    11111                  110  0112345688999999


Q ss_pred             EEEEEeC----CCc----EEEEEECCCC-cEEEEEecCCCcccEEEEEeCC------------------CCCEEEEEeCC
Q 014977          230 LLATAST----RGT----LIRIFNTVDG-TRLQEVRRGVDRAEIYSIALSP------------------NVQWLAVASDK  282 (415)
Q Consensus       230 ~l~s~s~----dg~----~I~vwd~~~~-~~~~~~~~~~~~~~v~~l~~sp------------------dg~~l~s~s~d  282 (415)
                      +|++.+.    .+.    ..++|+-+.. ++...+..  ...+...+.|+|                  -+-.+|.++. 
T Consensus       244 llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~--~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-  320 (434)
T KOG1009|consen  244 LLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPS--PKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-  320 (434)
T ss_pred             EEEcccceeeeCCceeeceeEeeccccccCceeecCC--CCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-
Confidence            9987542    222    0345543221 23333333  222344444432                  2234555554 


Q ss_pred             CeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCce
Q 014977          283 GTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTH  362 (415)
Q Consensus       283 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (415)
                      +.|+|||.++-+..-                                                       .--.+.....
T Consensus       321 ~svyvydtq~~~P~~-------------------------------------------------------~v~nihy~~i  345 (434)
T KOG1009|consen  321 NSVYVYDTQTLEPLA-------------------------------------------------------VVDNIHYSAI  345 (434)
T ss_pred             ceEEEeccccccceE-------------------------------------------------------EEeeeeeeee
Confidence            459999988765321                                                       0011122345


Q ss_pred             EEEEecCC-CEEEEEEeCCcEEEEEEecCCCC
Q 014977          363 FIAAFGSQ-NTVVIVSMDGSFYRCSFDPVHGG  393 (415)
Q Consensus       363 ~~~~~~~~-~~i~~~~~dg~~~~~~~~~~~~~  393 (415)
                      +.++|+.+ +.+++.+-||..-...|++.+-|
T Consensus       346 TDiaws~dg~~l~vSS~DGyCS~vtfe~~elg  377 (434)
T KOG1009|consen  346 TDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG  377 (434)
T ss_pred             cceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence            56899999 66777777999999899887666

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.70  E-value=2.8e-15  Score=128.08  Aligned_cols=238  Identities=16%  Similarity=0.240  Sum_probs=171.1

Q ss_pred             CCCCCceEEEEEeCC----CCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCe-EEEEecCCCCCCCCC
Q 014977           41 DVDEIELISVSWNQD----YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNI-LALVGAGDNSQYPPT  114 (415)
Q Consensus        41 ~~h~~~V~~l~~sp~----g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~~~~~  114 (415)
                      .+|.+..+.++|+-|    ..+||+|+ -|.|+|.|+...+..  ..+.+|+..|.++.+.|.. .++++++.|     .
T Consensus        86 ~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~--~~~~ghG~sINeik~~p~~~qlvls~SkD-----~  158 (385)
T KOG1034|consen   86 EDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCS--KNYRGHGGSINEIKFHPDRPQLVLSASKD-----H  158 (385)
T ss_pred             CCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhc--cceeccCccchhhhcCCCCCcEEEEecCC-----c
Confidence            468888999999854    34788877 999999999875543  3345899999999999964 778888888     9


Q ss_pred             eEEEEECCCCCEEEEEE----ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEe------------------
Q 014977          115 KVIIWDDHQSRCIGEFA----FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIE------------------  169 (415)
Q Consensus       115 ~i~vwd~~~~~~~~~~~----~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~------------------  169 (415)
                      .|++|++.+..++..+.    |...|.++.|+.++..++   .|..|++|++...+....++                  
T Consensus       159 svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~  238 (385)
T KOG1034|consen  159 SVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPK  238 (385)
T ss_pred             eEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccc
Confidence            99999999999999986    899999999999999998   79999999997322111110                  


Q ss_pred             ----------ccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC---------------cceEEEecCccceEEE--
Q 014977          170 ----------TLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL---------------NMIKLINAHDSHIACF--  222 (415)
Q Consensus       170 ----------~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~---------------~~~~~~~~~~~~i~~l--  222 (415)
                                .|.+  .+-|+.|-+  .++++ -+-++.|..|....               ..+..+.-....|+-+  
T Consensus       239 ~~fp~fst~diHrn--yVDCvrw~g--d~ilS-kscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf  313 (385)
T KOG1034|consen  239 THFPDFSTTDIHRN--YVDCVRWFG--DFILS-KSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRF  313 (385)
T ss_pred             cccccccccccccc--hHHHHHHHh--hheee-cccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEE
Confidence                      0111  111122222  24443 34566777787621               1122233334445544  


Q ss_pred             EeCCCCCEEEEEeCCCcEEEEEECCCCcEE--EEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEce
Q 014977          223 TLTLDGLLLATASTRGTLIRIFNTVDGTRL--QEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR  291 (415)
Q Consensus       223 ~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~--~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~  291 (415)
                      +|.|-++.||.|...|. |.+||++..++.  .++........|...+|+.||.+|+...+|++|.-||..
T Consensus       314 ~~d~~~~~la~gnq~g~-v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  314 AFDPWQKMLALGNQSGK-VYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             eecHHHHHHhhccCCCc-EEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            45677889999999999 999999877652  233322234579999999999999999999999999864

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.69  E-value=3.1e-16  Score=142.85  Aligned_cols=249  Identities=12%  Similarity=0.152  Sum_probs=177.8

Q ss_pred             CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccC------CceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCC
Q 014977           40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEP------FKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYP  112 (415)
Q Consensus        40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~  112 (415)
                      ...|.+.|+.++|+|....|++++ ++.+++|+++.      ........|.+|...|.+++...++..+.+++.|    
T Consensus       290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~D----  365 (577)
T KOG0642|consen  290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGID----  365 (577)
T ss_pred             eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccC----
Confidence            467888999999999999999999 99999999932      1222334567999999999999999999999998    


Q ss_pred             CCeEEEEECCCC------C----EEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceE
Q 014977          113 PTKVIIWDDHQS------R----CIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLC  178 (415)
Q Consensus       113 ~~~i~vwd~~~~------~----~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  178 (415)
                       |+|+.|++...      .    ....+. |...|+.+++++....++   .||+++.|+...... ..+..........
T Consensus       366 -g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl  443 (577)
T KOG0642|consen  366 -GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL  443 (577)
T ss_pred             -ceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence             99999964321      1    122233 889999999998665555   699999999865544 3333222222222


Q ss_pred             EEecCCCceEEEEeCCccCeEEEEEcCC-cceEEEec-------CccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCc
Q 014977          179 CLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINA-------HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT  250 (415)
Q Consensus       179 ~~~~~~~~~~l~~~g~~dg~v~i~~~~~-~~~~~~~~-------~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~  250 (415)
                      .+..-.....+.++...-+.-.+++... ..+..+..       ....+..+.++|.+.+.+++..|+. |+++|..+++
T Consensus       444 svd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~-Ir~~dn~~~~  522 (577)
T KOG0642|consen  444 SVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRS-IRFFDNKTGK  522 (577)
T ss_pred             eEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCc-eecccccccc
Confidence            2322221111212111222222222221 22222221       1245677889999999999999999 9999999999


Q ss_pred             EEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCC
Q 014977          251 RLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGE  297 (415)
Q Consensus       251 ~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~  297 (415)
                      .+.....  |...++++++.|+|.+|++++.|+.+++|.+..+.+..
T Consensus       523 ~l~s~~a--~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~  567 (577)
T KOG0642|consen  523 ILHSMVA--HKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVL  567 (577)
T ss_pred             cchheee--ccceecceeecCCCceEEeecCCceeehhhccchheee
Confidence            9988887  88899999999999999999999999999998887654

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.69  E-value=4.7e-15  Score=124.77  Aligned_cols=237  Identities=14%  Similarity=0.142  Sum_probs=167.7

Q ss_pred             CCCCCceEEEEEeCCCC-----EEEEEeCCcEEEEEccCCceeEE--Eec-----cCCCeeEEEEeeeC-CeEEEEecCC
Q 014977           41 DVDEIELISVSWNQDYG-----CFAAGTSCGFRIYNCEPFKETFR--RDL-----KSGGFRIVEMLFRC-NILALVGAGD  107 (415)
Q Consensus        41 ~~h~~~V~~l~~sp~g~-----~la~g~d~~v~iw~~~~~~~~~~--~~~-----~~~~~~~~~~~~~~-~~~~l~s~~~  107 (415)
                      .+|.-+++.+.|.|+..     +||+ ++..+|+|.+...+....  ..+     ......++++.|+. +-.++.+.+-
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLAT-s~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi  171 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLAT-SSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI  171 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhc-ccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence            57889999999999874     4444 456889999974222111  111     23455677888876 5567777777


Q ss_pred             CCCCCCCeEEEEECCCCCE----EEEEEccCceeEEEEcCCeEEEE----eCCeEEEEEcCCceeeeEEeccCC-CcceE
Q 014977          108 NSQYPPTKVIIWDDHQSRC----IGEFAFRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLAN-LRGLC  178 (415)
Q Consensus       108 d~~~~~~~i~vwd~~~~~~----~~~~~~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~  178 (415)
                      |     .+..|||++++..    .+.+.|..+|.+++|..++.-++    .||.+++||++..+....+..... .....
T Consensus       172 D-----TTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLl  246 (364)
T KOG0290|consen  172 D-----TTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLL  246 (364)
T ss_pred             c-----CeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcce
Confidence            7     9999999999733    33345999999999999766554    799999999998776665544333 34567


Q ss_pred             EEecCCCc-eEEEEeCCccCeEEEEEcC--CcceEEEecCccceEEEEeCCCC-CEEEEEeCCCcEEEEEECCCCc----
Q 014977          179 CLSHHSST-SVLACPGLQRGQVRIEHFG--LNMIKLINAHDSHIACFTLTLDG-LLLATASTRGTLIRIFNTVDGT----  250 (415)
Q Consensus       179 ~~~~~~~~-~~l~~~g~~dg~v~i~~~~--~~~~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~~----  250 (415)
                      .++++++. .++|+.+-....|.|-+.+  ..++..+++|.+.|+.|+|.|.. ..|++++.|.. +.+||+...-    
T Consensus       247 RLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~q-aliWDl~q~~~~~~  325 (364)
T KOG0290|consen  247 RLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQ-ALIWDLQQMPRENG  325 (364)
T ss_pred             eeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcce-EEEEecccccccCC
Confidence            77777654 3555545455567774444  46688899999999999999964 58999999998 9999996532    


Q ss_pred             --EEEEEecCCCcccEEEEEeCC-CCCEEEEEeCCCeEEEE
Q 014977          251 --RLQEVRRGVDRAEIYSIALSP-NVQWLAVASDKGTVHIF  288 (415)
Q Consensus       251 --~~~~~~~~~~~~~v~~l~~sp-dg~~l~s~s~dg~i~vw  288 (415)
                        ++..+.   ..+.|+.+.|++ .+.+|+.+... .+.+.
T Consensus       326 ~dPilay~---a~~EVNqi~Ws~~~~Dwiai~~~k-kleiL  362 (364)
T KOG0290|consen  326 EDPILAYT---AGGEVNQIQWSSSQPDWIAICFGK-KLEIL  362 (364)
T ss_pred             CCchhhhh---ccceeeeeeecccCCCEEEEEecC-eeeEE
Confidence              222222   345899999996 56788877644 35443

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=6.2e-14  Score=134.29  Aligned_cols=296  Identities=14%  Similarity=0.131  Sum_probs=199.7

Q ss_pred             CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccC--CceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977           40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEP--FKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (415)
Q Consensus        40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i  116 (415)
                      ...|.-.+++.++||+++++|+|. ||.|.+|.--.  ........++-|...+.++.|+++|.+|.+|+..     +.+
T Consensus       201 ~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E-----~VL  275 (792)
T KOG1963|consen  201 TVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGRE-----GVL  275 (792)
T ss_pred             hhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccc-----eEE
Confidence            345777799999999999999999 99999996532  2222223456788899999999999999999998     999


Q ss_pred             EEEECCCCCEEEEEEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCC---------cceEEEecCC
Q 014977          117 IIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANL---------RGLCCLSHHS  184 (415)
Q Consensus       117 ~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~---------~~~~~~~~~~  184 (415)
                      .+|.+.+++....-+..+.|..+.++||+.+.+   .|+.|.+....+......+.+...+         .-...+..+|
T Consensus       276 v~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp  355 (792)
T KOG1963|consen  276 VLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP  355 (792)
T ss_pred             EEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC
Confidence            999999998333334789999999999988776   8999999988776655544432211         1122334444


Q ss_pred             CceEEEEeCCccCeEEEEEcCC-cceEEEe-----------cCccceEEEEeCCCCCEEEEEeC--------CCc-EEEE
Q 014977          185 STSVLACPGLQRGQVRIEHFGL-NMIKLIN-----------AHDSHIACFTLTLDGLLLATAST--------RGT-LIRI  243 (415)
Q Consensus       185 ~~~~l~~~g~~dg~v~i~~~~~-~~~~~~~-----------~~~~~i~~l~~sp~g~~l~s~s~--------dg~-~I~v  243 (415)
                      .-..++. ....|.|++++... ..+..+.           .+.-.+++++.+-.|.++++.-.        ||. .+++
T Consensus       356 r~~~~vl-n~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKF  434 (792)
T KOG1963|consen  356 RTNSLVL-NGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKF  434 (792)
T ss_pred             CCCceee-cCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEE
Confidence            3334555 45899999966543 3333332           12335677888888999988643        322 3788


Q ss_pred             EECCCCc----EEEEEecCCCcccEEEEEe-CCCCC-EEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCC
Q 014977          244 FNTVDGT----RLQEVRRGVDRAEIYSIAL-SPNVQ-WLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSS  317 (415)
Q Consensus       244 wd~~~~~----~~~~~~~~~~~~~v~~l~~-spdg~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (415)
                      |-.....    +...+... |...+...+| ++... ..++++.||.++||-+...+...+..                 
T Consensus       435 W~~n~~~kt~~L~T~I~~P-H~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~-----------------  496 (792)
T KOG1963|consen  435 WQYNPNSKTFILNTKINNP-HGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKS-----------------  496 (792)
T ss_pred             EEEcCCcceeEEEEEEecC-CCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCc-----------------
Confidence            9765433    33334333 5544444444 44333 78999999999999997665431000                 


Q ss_pred             CCcccCCCCCCCCCCCcccccccccCcccccccceEEEE-eCCCceEEEEecCCCEEEEEEeCCcEEEEEEec
Q 014977          318 SFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFH-IPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~dg~~~~~~~~~  389 (415)
                                                    +.|...-+. ....+...++|+.++.+++++.|+.|-+|..+.
T Consensus       497 ------------------------------s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~  539 (792)
T KOG1963|consen  497 ------------------------------SNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDT  539 (792)
T ss_pred             ------------------------------cceEEeeeeccccCcccchhhcCCCcEEEEecCCEEEEecCCC
Confidence                                          011100000 012344568899999999999999999999987

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.67  E-value=3.3e-14  Score=119.75  Aligned_cols=239  Identities=14%  Similarity=0.140  Sum_probs=167.8

Q ss_pred             CCceEEEEEeC--C-CCEEEEEe-----CCcEEEEEcc--CCceeEEEeccCCCeeEEEEeeeCCe-----EEEEecCCC
Q 014977           44 EIELISVSWNQ--D-YGCFAAGT-----SCGFRIYNCE--PFKETFRRDLKSGGFRIVEMLFRCNI-----LALVGAGDN  108 (415)
Q Consensus        44 ~~~V~~l~~sp--~-g~~la~g~-----d~~v~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~s~~~d  108 (415)
                      .-.++++.|+.  + +.+||.|+     .+.|.|-.++  +++.+....| .+.-.+..+.|.|+.     .+|++.+  
T Consensus        44 p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~f-d~~YP~tK~~wiPd~~g~~pdlLATs~--  120 (364)
T KOG0290|consen   44 PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANF-DHPYPVTKLMWIPDSKGVYPDLLATSS--  120 (364)
T ss_pred             CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCC-CCCCCccceEecCCccccCcchhhccc--
Confidence            44688999983  3 45788887     4667776664  3333333334 677778888888865     3566655  


Q ss_pred             CCCCCCeEEEEECCC--CCEEEE--------EEccCceeEEEEcCCe-EEEE---eCCeEEEEEcCCce---eeeEEecc
Q 014977          109 SQYPPTKVIIWDDHQ--SRCIGE--------FAFRSDVRSVKLSRDR-IVVV---LEHKIYVYSFVDLK---LLHQIETL  171 (415)
Q Consensus       109 ~~~~~~~i~vwd~~~--~~~~~~--------~~~~~~i~~l~~~~~~-~~~~---~d~~i~iwd~~~~~---~~~~~~~~  171 (415)
                           ..+++|.+..  .+...+        -.+..++++..|+.-. +++.   .|-+..|||++++.   ...++-.|
T Consensus       121 -----D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAH  195 (364)
T KOG0290|consen  121 -----DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAH  195 (364)
T ss_pred             -----CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEec
Confidence                 6899999763  222111        1257889999998743 3444   69999999998863   35566778


Q ss_pred             CCCcceEEEecCCCc-eEEEEeCCccCeEEEEEcCCcceEE-Ee---cCccceEEEEeCC-CCCEEEEEeCCCcEEEEEE
Q 014977          172 ANLRGLCCLSHHSST-SVLACPGLQRGQVRIEHFGLNMIKL-IN---AHDSHIACFTLTL-DGLLLATASTRGTLIRIFN  245 (415)
Q Consensus       172 ~~~~~~~~~~~~~~~-~~l~~~g~~dg~v~i~~~~~~~~~~-~~---~~~~~i~~l~~sp-~g~~l~s~s~dg~~I~vwd  245 (415)
                      ...+.-++|.-  .+ ..+|+ .+.||.|++++++...-.+ +.   ....+...++|++ |-+++|+-..|...|.|.|
T Consensus       196 DKEV~DIaf~~--~s~~~FAS-vgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLD  272 (364)
T KOG0290|consen  196 DKEVYDIAFLK--GSRDVFAS-VGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILD  272 (364)
T ss_pred             CcceeEEEecc--CccceEEE-ecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEE
Confidence            88555555554  33 34454 5589999997766533222 22   1256778899987 4568888877776699999


Q ss_pred             CCCC-cEEEEEecCCCcccEEEEEeCCC-CCEEEEEeCCCeEEEEEceeccc
Q 014977          246 TVDG-TRLQEVRRGVDRAEIYSIALSPN-VQWLAVASDKGTVHIFSLRVRVV  295 (415)
Q Consensus       246 ~~~~-~~~~~~~~~~~~~~v~~l~~spd-g~~l~s~s~dg~i~vwd~~~~~~  295 (415)
                      ++.. .++.++++  |.+.|++++|.|. ...|+++++|..+.+||+...-.
T Consensus       273 iR~P~tpva~L~~--H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~  322 (364)
T KOG0290|consen  273 IRVPCTPVARLRN--HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR  322 (364)
T ss_pred             ecCCCcceehhhc--CcccccceEecCCCCceeeecCCcceEEEEecccccc
Confidence            9864 57788888  9999999999995 56899999999999999987643

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=2.2e-15  Score=132.96  Aligned_cols=198  Identities=20%  Similarity=0.229  Sum_probs=146.8

Q ss_pred             EEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEE-EccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeE
Q 014977           91 VEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEF-AFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQ  167 (415)
Q Consensus        91 ~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~  167 (415)
                      ..++|+.++..+++++.|     |++|||++.+...+... .|...|.++.|+||+++++  .....+||+.+++..+..
T Consensus       148 k~vaf~~~gs~latgg~d-----g~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~  222 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTD-----GTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVNTGAALAR  222 (398)
T ss_pred             eEEEEcCCCCEeeecccc-----ceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCCceEEEEeccCchhhh
Confidence            567899999999999998     99999997776655554 4999999999999999998  333999999999977666


Q ss_pred             EeccCCC--cceEEEecCCC--ceEEEEeCCccCeEEE-----EEcCC-cceEEEecCccceEEEEeCCCCCEEEEEeCC
Q 014977          168 IETLANL--RGLCCLSHHSS--TSVLACPGLQRGQVRI-----EHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTR  237 (415)
Q Consensus       168 ~~~~~~~--~~~~~~~~~~~--~~~l~~~g~~dg~v~i-----~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d  237 (415)
                      .......  ...+.|..++.  ..++++.-..-+.|..     |.... -..++.......|.+++.+++|+++|.|+.|
T Consensus       223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~d  302 (398)
T KOG0771|consen  223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMD  302 (398)
T ss_pred             cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccC
Confidence            5432222  23344444442  2233333333344444     33321 0112222334579999999999999999999


Q ss_pred             CcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceeccc
Q 014977          238 GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV  295 (415)
Q Consensus       238 g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~  295 (415)
                      |. |.|++..+.+.++-++.. |...|+.+.|+||.+++++.+.|.++.|..+.-.+.
T Consensus       303 Gs-Vai~~~~~lq~~~~vk~a-H~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd~~  358 (398)
T KOG0771|consen  303 GS-VAIYDAKSLQRLQYVKEA-HLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVDKT  358 (398)
T ss_pred             Cc-EEEEEeceeeeeEeehhh-heeeeeeEEEcCCcCcccccccCCceeEEEEeeccc
Confidence            99 999999988888766644 888999999999999999999999999999887543

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.66  E-value=1.2e-14  Score=127.17  Aligned_cols=226  Identities=12%  Similarity=0.121  Sum_probs=163.0

Q ss_pred             ccCCCCCCceEEEEEeCC-CCEEEEEe-CCcEEEEEccCCcee-----EEEeccCCCeeEEEEeeeCC-eEEEEecCCCC
Q 014977           38 AFSDVDEIELISVSWNQD-YGCFAAGT-SCGFRIYNCEPFKET-----FRRDLKSGGFRIVEMLFRCN-ILALVGAGDNS  109 (415)
Q Consensus        38 ~~~~~h~~~V~~l~~sp~-g~~la~g~-d~~v~iw~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~  109 (415)
                      +...+|+++|..++|+|- ...+|+|+ |.+|.||.+......     ....+.+|...+--+.|+|. ...|++++.| 
T Consensus        75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D-  153 (472)
T KOG0303|consen   75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD-  153 (472)
T ss_pred             CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC-
Confidence            457899999999999995 45778888 999999998643321     12335588888888999985 4566777776 


Q ss_pred             CCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCc
Q 014977          110 QYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSST  186 (415)
Q Consensus       110 ~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (415)
                          +.|.+|++.+|+.+.++.|...|.++.|+.||.+++   .|.+|+|||.++++.+..-..|..... ...-+-.++
T Consensus       154 ----n~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~-~Raifl~~g  228 (472)
T KOG0303|consen  154 ----NTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKP-ARAIFLASG  228 (472)
T ss_pred             ----ceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCc-ceeEEeccC
Confidence                999999999999999999999999999999999998   799999999999999988766654333 223333445


Q ss_pred             eEEEEeCC---ccCeEEEEEcCC--cc--eEEEecCccceEEEEeCCCCCEEEEEe-CCCcEEEEEECCCCcE-EEEEec
Q 014977          187 SVLACPGL---QRGQVRIEHFGL--NM--IKLINAHDSHIACFTLTLDGLLLATAS-TRGTLIRIFNTVDGTR-LQEVRR  257 (415)
Q Consensus       187 ~~l~~~g~---~dg~v~i~~~~~--~~--~~~~~~~~~~i~~l~~sp~g~~l~s~s-~dg~~I~vwd~~~~~~-~~~~~~  257 (415)
                      . ++++|.   .+..+-+|+...  ++  ...+. ....|.---|.+|..+++.++ .|+. |+-|.+....+ ++-+..
T Consensus       229 ~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~-IRYyEit~d~P~~hyln~  305 (472)
T KOG0303|consen  229 K-IFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSS-IRYFEITNEPPFVHYLNT  305 (472)
T ss_pred             c-eeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcc-eEEEEecCCCceeEEecc
Confidence            4 555563   466777887654  12  22222 344555566788888776554 5788 99999876553 333332


Q ss_pred             CCCcccEEEEEeCCC
Q 014977          258 GVDRAEIYSIALSPN  272 (415)
Q Consensus       258 ~~~~~~v~~l~~spd  272 (415)
                      .....+-..+.|-|.
T Consensus       306 f~S~epQRG~g~mPK  320 (472)
T KOG0303|consen  306 FSSKEPQRGMGFMPK  320 (472)
T ss_pred             cccCCcccccccccc
Confidence            213345677777774

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.66  E-value=4.8e-16  Score=147.37  Aligned_cols=290  Identities=13%  Similarity=0.164  Sum_probs=198.2

Q ss_pred             ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (415)
Q Consensus        38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i  116 (415)
                      ....+|..+|+|+.|...|.++++|+ |..++||.+++..+...  ..+|...+..++.+.+...+++++.|     ..|
T Consensus       184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs--~rGhs~ditdlavs~~n~~iaaaS~D-----~vI  256 (1113)
T KOG0644|consen  184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLAS--CRGHSGDITDLAVSSNNTMIAAASND-----KVI  256 (1113)
T ss_pred             HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhcc--CCCCccccchhccchhhhhhhhcccC-----ceE
Confidence            34578999999999999999999999 88999999988665443  56899999999999999999999988     999


Q ss_pred             EEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEEeCCeEEEEEcCCceeeeEEecc---CCCcceEEEecCCCceEEEEe
Q 014977          117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETL---ANLRGLCCLSHHSSTSVLACP  192 (415)
Q Consensus       117 ~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~  192 (415)
                      ++|.+.++.++..+. |.+.|++++|+|-. --..||++++||.+ ..........   .....+..+.+...+.-++ +
T Consensus       257 rvWrl~~~~pvsvLrghtgavtaiafsP~~-sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~-T  333 (1113)
T KOG0644|consen  257 RVWRLPDGAPVSVLRGHTGAVTAIAFSPRA-SSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRFL-T  333 (1113)
T ss_pred             EEEecCCCchHHHHhccccceeeeccCccc-cCCCCCceEecccc-ccccccCCCCCCcccccceeeeeccccccccc-c
Confidence            999999999999887 99999999999964 11179999999976 1111111000   0001122222222222233 3


Q ss_pred             CCccCeEEEEEcCCcceEEEecCccceEEEEeCCCC-CEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCC
Q 014977          193 GLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDG-LLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSP  271 (415)
Q Consensus       193 g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp  271 (415)
                      |+.|+.-..|....     +..+...+.-+.++.+- .+.+++-.+-. +++|++.+|..++.+.+  |...+..|.++|
T Consensus       334 gs~d~ea~n~e~~~-----l~~~~~~lif~t~ssd~~~~~~~ar~~~~-~~vwnl~~g~l~H~l~g--hsd~~yvLd~Hp  405 (1113)
T KOG0644|consen  334 GSRDGEARNHEFEQ-----LAWRSNLLIFVTRSSDLSSIVVTARNDHR-LCVWNLYTGQLLHNLMG--HSDEVYVLDVHP  405 (1113)
T ss_pred             ccCCcccccchhhH-----hhhhccceEEEeccccccccceeeeeeeE-eeeeecccchhhhhhcc--cccceeeeeecC
Confidence            56666555543221     11111111112222221 35556666666 99999999999988888  777889999999


Q ss_pred             CCCE-EEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCccccccc
Q 014977          272 NVQW-LAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEW  350 (415)
Q Consensus       272 dg~~-l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (415)
                      -... ..+++.||...|||+-.+-+.+                                              .|+    
T Consensus       406 fn~ri~msag~dgst~iwdi~eg~pik----------------------------------------------~y~----  435 (1113)
T KOG0644|consen  406 FNPRIAMSAGYDGSTIIWDIWEGIPIK----------------------------------------------HYF----  435 (1113)
T ss_pred             CCcHhhhhccCCCceEeeecccCCcce----------------------------------------------eee----
Confidence            5554 4589999999999999887542                                              111    


Q ss_pred             ceEEEEeCCCceEEEEecCCCEEEEEEeC-CcEEEEEEecCCCCcEEEeeeeec
Q 014977          351 SFAQFHIPEVTHFIAAFGSQNTVVIVSMD-GSFYRCSFDPVHGGEMLQQEYVRF  403 (415)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d-g~~~~~~~~~~~~~~~~~~~~~~~  403 (415)
                            .+..-...+.|+++++-++.+.| |.+||......+.  .....+.+|
T Consensus       436 ------~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s--~k~ak~dqf  481 (1113)
T KOG0644|consen  436 ------IGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKS--QKKAKYDQF  481 (1113)
T ss_pred             ------cccceeeccccCCCCceEecCCCCCceEEeccCCCcc--ccccccceE
Confidence                  22233445789999666666664 9999988766332  333445554

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.66  E-value=6.9e-15  Score=133.27  Aligned_cols=264  Identities=13%  Similarity=0.133  Sum_probs=177.9

Q ss_pred             CCCCCCceEEEEEeCCCCEEEEEeCCcEEEEE-ccCCceeEEEeccCCCeeEEEE-ee------eCCeEEEEecCCCCCC
Q 014977           40 SDVDEIELISVSWNQDYGCFAAGTSCGFRIYN-CEPFKETFRRDLKSGGFRIVEM-LF------RCNILALVGAGDNSQY  111 (415)
Q Consensus        40 ~~~h~~~V~~l~~sp~g~~la~g~d~~v~iw~-~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~l~s~~~d~~~  111 (415)
                      ...|...|.++.|+.+...+.+++|..+.+|. +.+... ....+...-.. ..+ .+      ......++.++.|   
T Consensus        10 k~r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~-~~~~~p~df~p-t~~h~~~rs~~~g~~~d~~~i~s~D---   84 (737)
T KOG1524|consen   10 KNRNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSV-EVAKLPDDFVP-TDMHLGGRSSGGGKGSDTLLICSND---   84 (737)
T ss_pred             ccccceeEEeecccccceEEEeccCceEEEeecccchhh-hhhhCCcccCC-ccccccccccCCCCCcceEEEEcCC---
Confidence            34677888899999998888888877666654 432211 11111011000 001 11      1122334444444   


Q ss_pred             CCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCce
Q 014977          112 PPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS  187 (415)
Q Consensus       112 ~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (415)
                        |.+.+.+ +.++..+.+. |.+.+.+-.|+|||.-++   .||.|++|. ++|-...++.....++.+.++.  |+..
T Consensus        85 --Gkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~--p~S~  158 (737)
T KOG1524|consen   85 --GRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWA--PNSN  158 (737)
T ss_pred             --ceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEEC--CCCC
Confidence              8888887 6666666666 999999999999998777   799999999 4554444444344444444444  4444


Q ss_pred             EEEEeCCccCeEEEEEc-CCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEE
Q 014977          188 VLACPGLQRGQVRIEHF-GLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYS  266 (415)
Q Consensus       188 ~l~~~g~~dg~v~i~~~-~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~  266 (415)
                      .++++  ..+.+.|-.. ....+...++|++-|.++.|++...++++|++|-. .+|||. -|..+..-..  |+-+|++
T Consensus       159 ~vl~c--~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~k-fKvWD~-~G~~Lf~S~~--~ey~ITS  232 (737)
T KOG1524|consen  159 SIVFC--QGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFR-FKIWDA-QGANLFTSAA--EEYAITS  232 (737)
T ss_pred             ceEEe--cCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCcee-EEeecc-cCcccccCCh--hccceee
Confidence            45553  3567887433 34556778999999999999999999999999999 999996 6777755555  7789999


Q ss_pred             EEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCccc
Q 014977          267 IALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYF  346 (415)
Q Consensus       267 l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (415)
                      ++|.|| +.++.++.. +++   +++...                                                   
T Consensus       233 va~npd-~~~~v~S~n-t~R---~~~p~~---------------------------------------------------  256 (737)
T KOG1524|consen  233 VAFNPE-KDYLLWSYN-TAR---FSSPRV---------------------------------------------------  256 (737)
T ss_pred             eeeccc-cceeeeeee-eee---ecCCCc---------------------------------------------------
Confidence            999999 666666643 344   222221                                                   


Q ss_pred             ccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977          347 SSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~  389 (415)
                                   +....++|+++ .++.++++.|.+.+.-+-+
T Consensus       257 -------------GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ie  287 (737)
T KOG1524|consen  257 -------------GSIFNLSWSADGTQATCGTSTGQLIVAYAIE  287 (737)
T ss_pred             -------------cceEEEEEcCCCceeeccccCceEEEeeeeh
Confidence                         45566899999 8899999999887754443

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.66  E-value=4.2e-16  Score=138.81  Aligned_cols=225  Identities=15%  Similarity=0.133  Sum_probs=180.7

Q ss_pred             ceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCC
Q 014977           46 ELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQS  124 (415)
Q Consensus        46 ~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~  124 (415)
                      .-+.+.++.+|++|+.|+ .|.+..+|+.+....++..   -...|.++.|-.+..+++.+-.      +.+.||| ..|
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~---v~Etv~Dv~~LHneq~~AVAQK------~y~yvYD-~~G  200 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN---VMETVRDVTFLHNEQFFAVAQK------KYVYVYD-NNG  200 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeecccceeeeeee---hhhhhhhhhhhcchHHHHhhhh------ceEEEec-CCC
Confidence            357889999999999999 9999999999877665543   3445666777777777777665      7999999 888


Q ss_pred             CEEEEEEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEE
Q 014977          125 RCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI  201 (415)
Q Consensus       125 ~~~~~~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i  201 (415)
                      ..+..++....|..+.|.|...+++   ..|.++.-|+.+|+.+..+.......  ..+..+|-+..+ ..|..+|+|.+
T Consensus       201 tElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~--~vm~qNP~NaVi-h~GhsnGtVSl  277 (545)
T KOG1272|consen  201 TELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRT--DVMKQNPYNAVI-HLGHSNGTVSL  277 (545)
T ss_pred             cEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCcc--chhhcCCccceE-EEcCCCceEEe
Confidence            8888888788999999999988888   67899999999999999887766643  445555555454 45889999999


Q ss_pred             EEcCC-cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEe
Q 014977          202 EHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVAS  280 (415)
Q Consensus       202 ~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s  280 (415)
                      |..+. .++..+..|.++|.+|++.++|+|+++.+.|.. ++|||++....+.++..   ..+...++||..| +|| .+
T Consensus       278 WSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~-~kIWDlR~~~ql~t~~t---p~~a~~ls~Sqkg-lLA-~~  351 (545)
T KOG1272|consen  278 WSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRK-VKIWDLRNFYQLHTYRT---PHPASNLSLSQKG-LLA-LS  351 (545)
T ss_pred             cCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccc-eeEeeeccccccceeec---CCCcccccccccc-cee-ee
Confidence            98775 556778899999999999999999999999999 99999998887777664   2356788888765 344 44


Q ss_pred             CCCeEEEEE
Q 014977          281 DKGTVHIFS  289 (415)
Q Consensus       281 ~dg~i~vwd  289 (415)
                      ....|.||.
T Consensus       352 ~G~~v~iw~  360 (545)
T KOG1272|consen  352 YGDHVQIWK  360 (545)
T ss_pred             cCCeeeeeh
Confidence            445699996

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.66  E-value=1.6e-14  Score=137.74  Aligned_cols=222  Identities=14%  Similarity=0.096  Sum_probs=149.0

Q ss_pred             CcEEEEEccCCceeEEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCeEEEEECCCCCE--EEE-----EEccCce
Q 014977           65 CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQSRC--IGE-----FAFRSDV  136 (415)
Q Consensus        65 ~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~i~vwd~~~~~~--~~~-----~~~~~~i  136 (415)
                      +.+.||++... ......+ .....+.++.|+| +..++++|..+     |.|.+||+..+..  ...     ..|..++
T Consensus       222 ~~~~vW~~~~p-~~Pe~~~-~~~s~v~~~~f~p~~p~ll~gG~y~-----GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v  294 (555)
T KOG1587|consen  222 GVLLVWSLKNP-NTPELVL-ESPSEVTCLKFCPFDPNLLAGGCYN-----GQVVLWDLRKGSDTPPSGLSALEVSHSEPV  294 (555)
T ss_pred             ceEEEEecCCC-CCceEEE-ecCCceeEEEeccCCcceEEeeccC-----ceEEEEEccCCCCCCCcccccccccCCcCe
Confidence            35889999864 2233334 5677788999998 45677777776     9999999887654  222     2388999


Q ss_pred             eEEEEcCCeE---EEE--eCCeEEEEEcCCcee-eeEE----ecc-----CCCcceEEEecCCCceEEEEeCCccCeEEE
Q 014977          137 RSVKLSRDRI---VVV--LEHKIYVYSFVDLKL-LHQI----ETL-----ANLRGLCCLSHHSSTSVLACPGLQRGQVRI  201 (415)
Q Consensus       137 ~~l~~~~~~~---~~~--~d~~i~iwd~~~~~~-~~~~----~~~-----~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i  201 (415)
                      ..+.|..+..   ++.  .||.|..|+++.... ....    ..|     .......++.+.+........|++.|.|.-
T Consensus       295 ~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~  374 (555)
T KOG1587|consen  295 TAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYK  374 (555)
T ss_pred             EEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEE
Confidence            9999975422   232  899999999854322 1111    110     112233344443332222334889999987


Q ss_pred             -EEcC--Ccc------eEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECC-CCcEEEEEecCCCcccEEEEEeCC
Q 014977          202 -EHFG--LNM------IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTV-DGTRLQEVRRGVDRAEIYSIALSP  271 (415)
Q Consensus       202 -~~~~--~~~------~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~-~~~~~~~~~~~~~~~~v~~l~~sp  271 (415)
                       ....  ...      ...+..|.++|+++.++|=+..++..+.|.+ ++||... ...++..+..  +...|++++|||
T Consensus       375 ~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~-vriWs~~~~~~Pl~~~~~--~~~~v~~vaWSp  451 (555)
T KOG1587|consen  375 GCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWT-VRIWSEDVIASPLLSLDS--SPDYVTDVAWSP  451 (555)
T ss_pred             EeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccce-eEeccccCCCCcchhhhh--ccceeeeeEEcC
Confidence             3222  222      3355678999999999997765554444888 9999977 5667766666  566799999999


Q ss_pred             CCC-EEEEEeCCCeEEEEEceecccC
Q 014977          272 NVQ-WLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       272 dg~-~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                      -.. .++++..||.|.+||+......
T Consensus       452 trpavF~~~d~~G~l~iWDLl~~~~~  477 (555)
T KOG1587|consen  452 TRPAVFATVDGDGNLDIWDLLQDDEE  477 (555)
T ss_pred             cCceEEEEEcCCCceehhhhhccccC
Confidence            654 6778888999999999887654

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.66  E-value=7.9e-15  Score=123.30  Aligned_cols=197  Identities=9%  Similarity=0.130  Sum_probs=148.3

Q ss_pred             CCCCceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEec----cCCCeeEEEEeeeC--CeEEEEecCCCCCCCCCe
Q 014977           42 VDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDL----KSGGFRIVEMLFRC--NILALVGAGDNSQYPPTK  115 (415)
Q Consensus        42 ~h~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~l~s~~~d~~~~~~~  115 (415)
                      .+-+.|.|+.|.|++..+++-.++.|.+|+++....+.....    ..+.....+-.|+|  ++..+++.++      ++
T Consensus       121 eavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d------~t  194 (370)
T KOG1007|consen  121 EAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSD------ST  194 (370)
T ss_pred             HHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCC------Cc
Confidence            556689999999999999998899999999987655322111    12234455556776  6777777665      89


Q ss_pred             EEEEECCCCCEEEEEE--ccCceeEEEEcCCeEEEE----eCCeEEEEEcCC-ceeeeEEeccCCCcceEEEecCCCceE
Q 014977          116 VIIWDDHQSRCIGEFA--FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVD-LKLLHQIETLANLRGLCCLSHHSSTSV  188 (415)
Q Consensus       116 i~vwd~~~~~~~~~~~--~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (415)
                      +..||+++.+....+.  |...|.++.|+|+.+.++    .|+.|++||.+. ..+++.+.+|.+  .+.++.+++....
T Consensus       195 l~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsH--WvW~VRfn~~hdq  272 (370)
T KOG1007|consen  195 LQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSH--WVWAVRFNPEHDQ  272 (370)
T ss_pred             EEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCce--EEEEEEecCccce
Confidence            9999999988888887  899999999999988776    699999999964 457788888888  4555555554445


Q ss_pred             EEEeCCccCeEEEEEcCC------------------------------cceEEEecCccceEEEEeCCCC-CEEEEEeCC
Q 014977          189 LACPGLQRGQVRIEHFGL------------------------------NMIKLINAHDSHIACFTLTLDG-LLLATASTR  237 (415)
Q Consensus       189 l~~~g~~dg~v~i~~~~~------------------------------~~~~~~~~~~~~i~~l~~sp~g-~~l~s~s~d  237 (415)
                      |+.+|+.|..|.++....                              ..+.++..|...|++++|+.-. =++|+-+.|
T Consensus       273 LiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYD  352 (370)
T KOG1007|consen  273 LILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYD  352 (370)
T ss_pred             EEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccC
Confidence            555688888888864321                              2234667899999999998744 467889999


Q ss_pred             CcEEEEEECC
Q 014977          238 GTLIRIFNTV  247 (415)
Q Consensus       238 g~~I~vwd~~  247 (415)
                      |. +.|=.+.
T Consensus       353 GR-viIs~V~  361 (370)
T KOG1007|consen  353 GR-VIISSVP  361 (370)
T ss_pred             ce-EEeecCC
Confidence            99 7776553

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.65  E-value=3.4e-14  Score=138.20  Aligned_cols=286  Identities=15%  Similarity=0.179  Sum_probs=187.5

Q ss_pred             CceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEec-cCCCeeEEEEeee--CCeEEEEecCCCCCCCCCeEEEEE
Q 014977           45 IELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDL-KSGGFRIVEMLFR--CNILALVGAGDNSQYPPTKVIIWD  120 (415)
Q Consensus        45 ~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~l~s~~~d~~~~~~~i~vwd  120 (415)
                      .+-..+.|+|-...++++. ...|+|||.+.....-.... ......|..+.+-  .+..++.+++.|     |.|+||+
T Consensus      1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~d-----GvIRIwk 1139 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSD-----GVIRIWK 1139 (1387)
T ss_pred             CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccC-----ceEEEec
Confidence            3566788999888999988 77899999987655332221 0123445555544  355677777777     9999998


Q ss_pred             C-CC----CCEEEEEE-c-------cCceeEEEEcCC-eEEEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCC
Q 014977          121 D-HQ----SRCIGEFA-F-------RSDVRSVKLSRD-RIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHS  184 (415)
Q Consensus       121 ~-~~----~~~~~~~~-~-------~~~i~~l~~~~~-~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (415)
                      - .+    .+.+.-.. .       .+.=.-+.|... |.+++  .-..|+|||....+.+..+..... ..+.+++.+-
T Consensus      1140 ~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~-t~vTaLS~~~ 1218 (1387)
T KOG1517|consen 1140 DYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSS-TLVTALSADL 1218 (1387)
T ss_pred             ccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCC-ccceeecccc
Confidence            3 22    22332222 0       011122445543 44444  346799999988777777654432 2455666654


Q ss_pred             Cc-eEEEEeCCccCeEEEEEcCCc----ceEEEecCccc--eEEEEeCCCCCE-EEEEeCCCcEEEEEECCCCcEEEEEe
Q 014977          185 ST-SVLACPGLQRGQVRIEHFGLN----MIKLINAHDSH--IACFTLTLDGLL-LATASTRGTLIRIFNTVDGTRLQEVR  256 (415)
Q Consensus       185 ~~-~~l~~~g~~dg~v~i~~~~~~----~~~~~~~~~~~--i~~l~~sp~g~~-l~s~s~dg~~I~vwd~~~~~~~~~~~  256 (415)
                      .+ ..++ +|..||.|++++.+..    .+...+.|...  |..+.+.+.|-- |++|+.||. |++||++.......+.
T Consensus      1219 ~~gn~i~-AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~-I~~~DlR~~~~e~~~~ 1296 (1387)
T KOG1517|consen 1219 VHGNIIA-AGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD-IQLLDLRMSSKETFLT 1296 (1387)
T ss_pred             cCCceEE-EeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCe-EEEEecccCcccccce
Confidence            43 4555 5999999999887753    45667788877  999999987754 999999999 9999998743222222


Q ss_pred             cCCC---cccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCC
Q 014977          257 RGVD---RAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGS  333 (415)
Q Consensus       257 ~~~~---~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (415)
                      ...|   .+..+++..+++...+|+|+. +.|+||++...+-..                                    
T Consensus      1297 iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~------------------------------------ 1339 (1387)
T KOG1517|consen 1297 IVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNI------------------------------------ 1339 (1387)
T ss_pred             eeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcc------------------------------------
Confidence            1111   225899999999999999998 899999998665331                                    


Q ss_pred             cccccccccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977          334 SLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~  389 (415)
                       +.+.+.++..             ..+...+++|+|. -.+++|..|..|-||..++
T Consensus      1340 -~k~n~~F~~q-------------~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1340 -IKYNPGFMGQ-------------RIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred             -cccCcccccC-------------cCCCcceeeecchhHhhhhccCCceEEEeecCC
Confidence             0111111110             0134578899998 5556666689999998776

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.65  E-value=6.8e-15  Score=130.91  Aligned_cols=243  Identities=12%  Similarity=0.096  Sum_probs=167.8

Q ss_pred             ccCCCCCCceEEEEEeCCC-CEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCe
Q 014977           38 AFSDVDEIELISVSWNQDY-GCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK  115 (415)
Q Consensus        38 ~~~~~h~~~V~~l~~sp~g-~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~  115 (415)
                      .....|..+|.++.|+|.. ..+.+.+ ||+|++-|++.........+.........+.|+.+...++.++.-     |.
T Consensus       228 ~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~-----G~  302 (498)
T KOG4328|consen  228 YLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNV-----GN  302 (498)
T ss_pred             EEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecc-----cc
Confidence            4467899999999999955 4555555 999999999864332222233456667777887766655555554     89


Q ss_pred             EEEEECCCCCE-EEEEE-ccCceeEEEEcCCeEEEE----eCCeEEEEEcCCceeee----EEeccCCCcceEEEecCCC
Q 014977          116 VIIWDDHQSRC-IGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLH----QIETLANLRGLCCLSHHSS  185 (415)
Q Consensus       116 i~vwd~~~~~~-~~~~~-~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~  185 (415)
                      +.+||+++++. ...+. |...|..++++|-...++    .|++++|||++......    ....|...+....|+|+. 
T Consensus       303 f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~-  381 (498)
T KOG4328|consen  303 FNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSG-  381 (498)
T ss_pred             eEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCC-
Confidence            99999988765 44444 888999999999776655    79999999997543222    223456655555566554 


Q ss_pred             ceEEEEeCCccCeEEEEEcC----C-cceEEEecCc----c--ceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEE
Q 014977          186 TSVLACPGLQRGQVRIEHFG----L-NMIKLINAHD----S--HIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQE  254 (415)
Q Consensus       186 ~~~l~~~g~~dg~v~i~~~~----~-~~~~~~~~~~----~--~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~  254 (415)
                       ..|+++ +.|..|+||+..    . .+...+. |.    .  ......|.|+-.++++|..-.. |-|+|-..++.+..
T Consensus       382 -gtl~TT-~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~-IDv~~~~~~q~v~e  457 (498)
T KOG4328|consen  382 -GTLLTT-CQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRP-IDVFDGNGGQMVCE  457 (498)
T ss_pred             -CceEee-ccCCceEEeecccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcc-eeEEcCCCCEEeee
Confidence             446664 589999998873    2 2222222 22    1  2235679999999999999999 99999888887877


Q ss_pred             EecCCCcccEEE-EEeCCCCC-EEEEEeCCCeEEEEEce
Q 014977          255 VRRGVDRAEIYS-IALSPNVQ-WLAVASDKGTVHIFSLR  291 (415)
Q Consensus       255 ~~~~~~~~~v~~-l~~spdg~-~l~s~s~dg~i~vwd~~  291 (415)
                      +... ....|.+ ..|+|-+. +++.++..|.|+||--+
T Consensus       458 l~~P-~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k  495 (498)
T KOG4328|consen  458 LHDP-ESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK  495 (498)
T ss_pred             ccCc-cccccccceeecccccceeccCCccceEEEEecC
Confidence            7654 2223443 47999887 44455566788888543

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.64  E-value=5.3e-15  Score=134.04  Aligned_cols=203  Identities=13%  Similarity=0.125  Sum_probs=161.5

Q ss_pred             EEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE-ccCc
Q 014977           58 CFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSD  135 (415)
Q Consensus        58 ~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~  135 (415)
                      .|+.++ ||.+.|.+-..  . .+.....|...+.+-.|+++|.-|++.+.|     |.|++|. ++|....++. ...+
T Consensus        77 ~~~i~s~DGkf~il~k~~--r-VE~sv~AH~~A~~~gRW~~dGtgLlt~GED-----G~iKiWS-rsGMLRStl~Q~~~~  147 (737)
T KOG1524|consen   77 TLLICSNDGRFVILNKSA--R-VERSISAHAAAISSGRWSPDGAGLLTAGED-----GVIKIWS-RSGMLRSTVVQNEES  147 (737)
T ss_pred             eEEEEcCCceEEEecccc--h-hhhhhhhhhhhhhhcccCCCCceeeeecCC-----ceEEEEe-ccchHHHHHhhcCce
Confidence            455555 99988876442  1 223344788888999999999999999998     9999999 6666555544 7889


Q ss_pred             eeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEe
Q 014977          136 VRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLIN  213 (415)
Q Consensus       136 i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~  213 (415)
                      |+|++|.|+...++  ..+.+.|=.+.-...+-..+.|..  -+.++.|++...++++ |++|-..++|+..+..+..-.
T Consensus       148 v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDG--iiL~~~W~~~s~lI~s-gGED~kfKvWD~~G~~Lf~S~  224 (737)
T KOG1524|consen  148 IRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDG--LVLSLSWSTQSNIIAS-GGEDFRFKIWDAQGANLFTSA  224 (737)
T ss_pred             eEEEEECCCCCceEEecCCeEEEeecccccceeEEeccCc--EEEEeecCccccceee-cCCceeEEeecccCcccccCC
Confidence            99999999877666  788899888877666667788877  6788888888878776 779999999999999999999


Q ss_pred             cCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEE
Q 014977          214 AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIF  288 (415)
Q Consensus       214 ~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vw  288 (415)
                      .|+.+|++++|+|+ +.++.++.+ + ++            +... ..+.|..++||+||..++.|+..|.+.+=
T Consensus       225 ~~ey~ITSva~npd-~~~~v~S~n-t-~R------------~~~p-~~GSifnlsWS~DGTQ~a~gt~~G~v~~A  283 (737)
T KOG1524|consen  225 AEEYAITSVAFNPE-KDYLLWSYN-T-AR------------FSSP-RVGSIFNLSWSADGTQATCGTSTGQLIVA  283 (737)
T ss_pred             hhccceeeeeeccc-cceeeeeee-e-ee------------ecCC-CccceEEEEEcCCCceeeccccCceEEEe
Confidence            99999999999999 666666644 2 44            3222 45689999999999999999999976553

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.64  E-value=2.1e-14  Score=125.60  Aligned_cols=221  Identities=12%  Similarity=0.127  Sum_probs=144.6

Q ss_pred             EeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC--------cceEEEecCccceEEEEeCCCC-CEEEEEeCCC
Q 014977          168 IETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL--------NMIKLINAHDSHIACFTLTLDG-LLLATASTRG  238 (415)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~--------~~~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg  238 (415)
                      +.+|..++  +.+.|+|.+...+++|++|.+|.||....        +++..+.+|...|.-++|+|.. +.|++++.|.
T Consensus        77 v~GHt~~v--LDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn  154 (472)
T KOG0303|consen   77 VCGHTAPV--LDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN  154 (472)
T ss_pred             ccCccccc--cccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence            45666644  44455544445566799999999998653        5678899999999999999965 4788999999


Q ss_pred             cEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCC
Q 014977          239 TLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSS  318 (415)
Q Consensus       239 ~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (415)
                      . |.+||+.+|+.+.++.   |..-|.++.|+.||.+|++.+.|..|+|||.++++...+...|             .+.
T Consensus       155 ~-v~iWnv~tgeali~l~---hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~h-------------eG~  217 (472)
T KOG0303|consen  155 T-VSIWNVGTGEALITLD---HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAH-------------EGA  217 (472)
T ss_pred             e-EEEEeccCCceeeecC---CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccc-------------cCC
Confidence            9 9999999999988877   8889999999999999999999999999999999865433222             111


Q ss_pred             Cc-ccCCCCCCCCCCCcccccccccCccccc---ccceEEEEeCCCceE-EEEecCC-CEEEEEEe-CCcEEEEEEecCC
Q 014977          319 FD-TLISPSTGANPGSSLSFMRGVLPKYFSS---EWSFAQFHIPEVTHF-IAAFGSQ-NTVVIVSM-DGSFYRCSFDPVH  391 (415)
Q Consensus       319 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~-~~i~~~~~-dg~~~~~~~~~~~  391 (415)
                      +. +.+=...|.-..+.++-+..-+..+|+.   +..+....++.+.-. .-.|-++ +.|+.+|. ||.|+.|.+..+.
T Consensus       218 k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  218 KPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             CcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence            11 1111122222222233332222222222   223334444432222 3345666 55555555 9999999997643


Q ss_pred             CCcEEEeeeeecccCCCCCc
Q 014977          392 GGEMLQQEYVRFLKTVSRPR  411 (415)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~  411 (415)
                      .    ...|.+-...-+++|
T Consensus       298 P----~~hyln~f~S~epQR  313 (472)
T KOG0303|consen  298 P----FVHYLNTFSSKEPQR  313 (472)
T ss_pred             c----eeEEecccccCCccc
Confidence            2    233444444445555

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=9e-15  Score=125.69  Aligned_cols=225  Identities=12%  Similarity=0.124  Sum_probs=156.7

Q ss_pred             CEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC--CeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE--
Q 014977           57 GCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC--NILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA--  131 (415)
Q Consensus        57 ~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~--  131 (415)
                      ..+|++. .|.|++||..+++.+..  +..+...+..+.|..  ....+.+++.|     |+|++||++.......+.  
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~--fk~~~~~~N~vrf~~~ds~h~v~s~ssD-----G~Vr~wD~Rs~~e~a~~~~~  113 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEE--FKGPPATTNGVRFISCDSPHGVISCSSD-----GTVRLWDIRSQAESARISWT  113 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhhe--ecCCCCcccceEEecCCCCCeeEEeccC-----CeEEEEEeecchhhhheecc
Confidence            4567666 99999999998554433  445555566666655  55677778877     999999998876655554  


Q ss_pred             -cc-CceeEEEEcCCeEEEE-------eCCeEEEEEcCCcee-eeEE-eccCCCcceEEEecCCCceEEEEeCCccCeEE
Q 014977          132 -FR-SDVRSVKLSRDRIVVV-------LEHKIYVYSFVDLKL-LHQI-ETLANLRGLCCLSHHSSTSVLACPGLQRGQVR  200 (415)
Q Consensus       132 -~~-~~i~~l~~~~~~~~~~-------~d~~i~iwd~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~  200 (415)
                       +. .+..+++.+-.+.+++       .+-.+.+||++..+. +..+ ..|...++.++|+|+..+  ++.+|+.||.|.
T Consensus       114 ~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pn--lLlSGSvDGLvn  191 (376)
T KOG1188|consen  114 QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPN--LLLSGSVDGLVN  191 (376)
T ss_pred             CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCC--eEEeecccceEE
Confidence             22 4667777775666665       477899999987665 5554 678887777777776544  334699999999


Q ss_pred             EEEcCCc----ceEEEecCccceEEEEeCCCC-CEEEEEeCCCcEEEEEECCCCcEE-----------------------
Q 014977          201 IEHFGLN----MIKLINAHDSHIACFTLTLDG-LLLATASTRGTLIRIFNTVDGTRL-----------------------  252 (415)
Q Consensus       201 i~~~~~~----~~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~~~~-----------------------  252 (415)
                      +++....    .+...-.|...|..+.|..++ +.|.+-+.... ..+|+++.+...                       
T Consensus       192 lfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Et-f~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I  270 (376)
T KOG1188|consen  192 LFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMET-FAIYELEDGSEETWLENPDVSADDLRKEDNCDYVI  270 (376)
T ss_pred             eeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCc-eeEEEccCCChhhcccCccchhhhHHhhhhhhhee
Confidence            9877653    222333567778888888777 34777777777 888887653211                       


Q ss_pred             --------------------------------------EEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEcee
Q 014977          253 --------------------------------------QEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV  292 (415)
Q Consensus       253 --------------------------------------~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~  292 (415)
                                                            ..+.+ .|...|+++.|...+.++.+|++||.+.+|..+.
T Consensus       271 ~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g-~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~d  347 (376)
T KOG1188|consen  271 NEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQG-GHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVED  347 (376)
T ss_pred             ecccCCCcceEEEeccccCceeEEEeeecccccccCccccccC-CcHHHHHHHhhhcccceeeccCCCceEEEEecCC
Confidence                                                  01111 1344556667777778999999999999999743

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.64  E-value=9.5e-15  Score=124.67  Aligned_cols=236  Identities=13%  Similarity=0.160  Sum_probs=169.4

Q ss_pred             CCceEEEEEe-------CCCCEEEEEe-CCcEEEEEccCCceeEEEecc---CCCeeEEEEeeeCCeEEEEecCCCCCCC
Q 014977           44 EIELISVSWN-------QDYGCFAAGT-SCGFRIYNCEPFKETFRRDLK---SGGFRIVEMLFRCNILALVGAGDNSQYP  112 (415)
Q Consensus        44 ~~~V~~l~~s-------p~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~s~~~d~~~~  112 (415)
                      ...|+..+|-       |+..++|+.+ +.-|++||.-+++.......-   ..-....++.|++||..|..|-.     
T Consensus       104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk-----  178 (406)
T KOG2919|consen  104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK-----  178 (406)
T ss_pred             CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc-----
Confidence            4567777775       6677888888 999999999886654432221   22345678999999999988776     


Q ss_pred             CCeEEEEEC-CCCCEEEEE---E-----ccCceeEEEEcCCeE-EEE---eCCeEEEEEcCCceeeeEEeccCCCcceEE
Q 014977          113 PTKVIIWDD-HQSRCIGEF---A-----FRSDVRSVKLSRDRI-VVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCC  179 (415)
Q Consensus       113 ~~~i~vwd~-~~~~~~~~~---~-----~~~~i~~l~~~~~~~-~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  179 (415)
                       ..|+++|+ +.|..-..+   .     ..+-|.+++|+|-.. .++   ....+-||.-..+.++..+-+|..  .+..
T Consensus       179 -rcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~g--GvTh  255 (406)
T KOG2919|consen  179 -RCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGG--GVTH  255 (406)
T ss_pred             -ceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCC--Ceee
Confidence             89999998 555432222   1     267788999999654 444   456677777678888888888887  5555


Q ss_pred             EecCCCceEEEEeCCccCeEEEEEcCC--cceEEEecCcc-ceEEEE--eCCCCCEEEEEeCCCcEEEEEECCC-CcEEE
Q 014977          180 LSHHSSTSVLACPGLQRGQVRIEHFGL--NMIKLINAHDS-HIACFT--LTLDGLLLATASTRGTLIRIFNTVD-GTRLQ  253 (415)
Q Consensus       180 ~~~~~~~~~l~~~g~~dg~v~i~~~~~--~~~~~~~~~~~-~i~~l~--~sp~g~~l~s~s~dg~~I~vwd~~~-~~~~~  253 (415)
                      +.+.++|..|.+.+..+..|..|+++.  .++..+..|.. .-..|.  ..|+|++|++|+.||. |++||+++ |..+.
T Consensus       256 L~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~-V~vwdlk~~gn~~s  334 (406)
T KOG2919|consen  256 LQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGS-VRVWDLKDLGNEVS  334 (406)
T ss_pred             EEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCcc-EEEEecCCCCCccc
Confidence            566666667766555677788899875  44556666655 333444  4689999999999999 99999988 66666


Q ss_pred             EEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceec
Q 014977          254 EVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR  293 (415)
Q Consensus       254 ~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~  293 (415)
                      .+..  +...++.++++|--.++|+++..   ++|...+.
T Consensus       335 v~~~--~sd~vNgvslnP~mpilatssGq---r~f~~~~d  369 (406)
T KOG2919|consen  335 VTGN--YSDTVNGVSLNPIMPILATSSGQ---RIFKYPKD  369 (406)
T ss_pred             cccc--ccccccceecCcccceeeeccCc---eeecCCCc
Confidence            6665  77789999999997778777654   44444443

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=2.4e-13  Score=130.36  Aligned_cols=235  Identities=13%  Similarity=0.151  Sum_probs=170.1

Q ss_pred             eEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCe---EEEEecCCCCCCCCCeEEEEECCC
Q 014977           47 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNI---LALVGAGDNSQYPPTKVIIWDDHQ  123 (415)
Q Consensus        47 V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~s~~~d~~~~~~~i~vwd~~~  123 (415)
                      -....|++|++.++...+..|.||...++..+.  .++++...+..+.+.+..   .++.+++.+     |.|++||...
T Consensus        19 ~~~avfSnD~k~l~~~~~~~V~VyS~~Tg~~i~--~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~-----G~I~vwd~~~   91 (792)
T KOG1963|consen   19 KSPAVFSNDAKFLFLCTGNFVKVYSTATGECIT--SLEDHTAPLTSVIVLPSSENANYLIVCSLD-----GTIRVWDWSD   91 (792)
T ss_pred             ecccccccCCcEEEEeeCCEEEEEecchHhhhh--hcccccCccceeeecCCCccceEEEEEecC-----ccEEEecCCC
Confidence            344568999999999999999999999876654  455777777777766532   566677776     9999999988


Q ss_pred             CCEEEEEEccCceeEE-----------------------------------------------------------EEcCC
Q 014977          124 SRCIGEFAFRSDVRSV-----------------------------------------------------------KLSRD  144 (415)
Q Consensus       124 ~~~~~~~~~~~~i~~l-----------------------------------------------------------~~~~~  144 (415)
                      +..++++....++..+                                                           .+++.
T Consensus        92 ~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~  171 (792)
T KOG1963|consen   92 GELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNS  171 (792)
T ss_pred             cEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCC
Confidence            8887776532222222                                                           22222


Q ss_pred             eEEEE--eCCeEEEEEcCCceee-eEE---eccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC-----cceEEEe
Q 014977          145 RIVVV--LEHKIYVYSFVDLKLL-HQI---ETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-----NMIKLIN  213 (415)
Q Consensus       145 ~~~~~--~d~~i~iwd~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~-----~~~~~~~  213 (415)
                      +.+..  .+..+++|........ ...   ..|..  .+.+.+.+|.+.++|+ |..||.|.+|..-+     ...+.+.
T Consensus       172 ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf--~~t~~~~spn~~~~Aa-~d~dGrI~vw~d~~~~~~~~t~t~lH  248 (792)
T KOG1963|consen  172 GEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTF--NITCVALSPNERYLAA-GDSDGRILVWRDFGSSDDSETCTLLH  248 (792)
T ss_pred             ceEEEEEEeeeEEEEEecccceeeccchhhhhhcc--cceeEEeccccceEEE-eccCCcEEEEeccccccccccceEEE
Confidence            22222  4556667776553311 001   11222  2455566667778876 77899999986544     3456778


Q ss_pred             cCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceec
Q 014977          214 AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR  293 (415)
Q Consensus       214 ~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~  293 (415)
                      -|...|++++|+++|.+|++|+..+. +.+|.+.+++ .+-+..  -.++|..+.+|||+.+.+....|+.|.+-...+-
T Consensus       249 WH~~~V~~L~fS~~G~~LlSGG~E~V-Lv~Wq~~T~~-kqfLPR--Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl  324 (792)
T KOG1963|consen  249 WHHDEVNSLSFSSDGAYLLSGGREGV-LVLWQLETGK-KQFLPR--LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDL  324 (792)
T ss_pred             ecccccceeEEecCCceEeecccceE-EEEEeecCCC-cccccc--cCCeeEEEEEcCCCCeEEEEecCceEEEEeccch
Confidence            89999999999999999999999999 9999999988 334554  6679999999999999999999999999988665


Q ss_pred             cc
Q 014977          294 VV  295 (415)
Q Consensus       294 ~~  295 (415)
                      +.
T Consensus       325 ~~  326 (792)
T KOG1963|consen  325 EI  326 (792)
T ss_pred             hh
Confidence            53

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.63  E-value=4.1e-12  Score=120.61  Aligned_cols=238  Identities=20%  Similarity=0.325  Sum_probs=180.3

Q ss_pred             CceEEEEE-eCCCC-EEEE-Ee-CCcEEEEEccC-CceeEEEeccCCCeeEEEEeeeCCeEEEEecCC-CCCCCCCeEEE
Q 014977           45 IELISVSW-NQDYG-CFAA-GT-SCGFRIYNCEP-FKETFRRDLKSGGFRIVEMLFRCNILALVGAGD-NSQYPPTKVII  118 (415)
Q Consensus        45 ~~V~~l~~-sp~g~-~la~-g~-d~~v~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d~~~~~~~i~v  118 (415)
                      ..+..+.+ ++++. .++. +. ++.+.+|+... ......  +..+...+..+.|++++..++.++. +     +.+++
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~-----~~~~~  182 (466)
T COG2319         110 SSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRT--LEGHSESVTSLAFSPDGKLLASGSSLD-----GTIKL  182 (466)
T ss_pred             CceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEE--EecCcccEEEEEECCCCCEEEecCCCC-----CceEE
Confidence            46777777 78887 4444 34 88999999986 333333  3367777889999999977777764 5     99999


Q ss_pred             EECCCCCEEEEEE-ccCceeEEEEcCCeE-EEE---eCCeEEEEEcCCceeee-EEeccCCCcceEEEecCCCceEEEEe
Q 014977          119 WDDHQSRCIGEFA-FRSDVRSVKLSRDRI-VVV---LEHKIYVYSFVDLKLLH-QIETLANLRGLCCLSHHSSTSVLACP  192 (415)
Q Consensus       119 wd~~~~~~~~~~~-~~~~i~~l~~~~~~~-~~~---~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~  192 (415)
                      |++..+..+..+. |...+.+++|+|++. .++   .|+.|++||...+..+. .+..|.... +..+.++  +.+++ +
T Consensus       183 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~-~  258 (466)
T COG2319         183 WDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPD--GSLLA-S  258 (466)
T ss_pred             EEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCC--CCEEE-E
Confidence            9999888888887 799999999999986 444   68999999988777777 577776644 4445554  44555 4


Q ss_pred             CCccCeEEEEEcCCcc--eEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeC
Q 014977          193 GLQRGQVRIEHFGLNM--IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALS  270 (415)
Q Consensus       193 g~~dg~v~i~~~~~~~--~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~s  270 (415)
                      ++.++.+++|+.....  ...+..|...+.++.|+|++..+++++.|+. +.+||..+...........|...+..+.|.
T Consensus       259 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (466)
T COG2319         259 GSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGT-VRLWDLETGKLLSSLTLKGHEGPVSSLSFS  337 (466)
T ss_pred             ecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCc-EEEEEcCCCceEEEeeecccCCceEEEEEC
Confidence            7799999998876433  3444678899999999998888888999988 999999888776666511155578999994


Q ss_pred             CCCCEEEEE-eCCCeEEEEEceecc
Q 014977          271 PNVQWLAVA-SDKGTVHIFSLRVRV  294 (415)
Q Consensus       271 pdg~~l~s~-s~dg~i~vwd~~~~~  294 (415)
                      +++..++.+ ..|+.+.+|++....
T Consensus       338 ~~~~~~~~~~~~d~~~~~~~~~~~~  362 (466)
T COG2319         338 PDGSLLVSGGSDDGTIRLWDLRTGK  362 (466)
T ss_pred             CCCCEEEEeecCCCcEEeeecCCCc
Confidence            343556555 678899999988776

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=4.5e-13  Score=110.26  Aligned_cols=227  Identities=11%  Similarity=0.137  Sum_probs=157.7

Q ss_pred             ceEEEEEeCCCCEEEEEe-CCcEEEEEccCC--------ceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977           46 ELISVSWNQDYGCFAAGT-SCGFRIYNCEPF--------KETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (415)
Q Consensus        46 ~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i  116 (415)
                      .|.+-+++|.+++|++|. +|.|.+..+...        .+.....++.|...+..+.|..+  +|.++++      |.|
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~--~Lls~gd------G~V   83 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD--FLLSGGD------GLV   83 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh--heeeccC------ceE
Confidence            366678999999999999 999999988531        22222334678888999999843  3445554      899


Q ss_pred             EEEECCCCC------EEEEEE--------ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEE
Q 014977          117 IIWDDHQSR------CIGEFA--------FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCC  179 (415)
Q Consensus       117 ~vwd~~~~~------~~~~~~--------~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  179 (415)
                      +-|......      .+.+..        .-..|++|.+.|...-++   .|+.++-||+++|+...++.+|.+.+..+.
T Consensus        84 ~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv  163 (325)
T KOG0649|consen   84 YGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVV  163 (325)
T ss_pred             EEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeee
Confidence            998864422      122221        124688899987654433   799999999999999999999998554443


Q ss_pred             EecCCCceEEEEeCCccCeEEEEEcCC-cceEEEec---------C-ccceEEEEeCCCCCEEEEEeCCCcEEEEEECCC
Q 014977          180 LSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINA---------H-DSHIACFTLTLDGLLLATASTRGTLIRIFNTVD  248 (415)
Q Consensus       180 ~~~~~~~~~l~~~g~~dg~v~i~~~~~-~~~~~~~~---------~-~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~  248 (415)
                      .. +..+. +. +|++||++++|+... +.+..+..         | ...|.+++.  +..+|++|+.. . +.+|++++
T Consensus       164 ~R-~~~~q-il-sG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp-~-lslwhLrs  236 (325)
T KOG0649|consen  164 GR-NANGQ-IL-SGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGP-K-LSLWHLRS  236 (325)
T ss_pred             ec-ccCcc-ee-ecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCC-c-eeEEeccC
Confidence            31 22333 33 589999999998765 44555432         2 234555655  44577776644 4 89999999


Q ss_pred             CcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEcee
Q 014977          249 GTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV  292 (415)
Q Consensus       249 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~  292 (415)
                      .++...|.-   .+++..+.|..  ..+++++..+.|.-|.+..
T Consensus       237 se~t~vfpi---pa~v~~v~F~~--d~vl~~G~g~~v~~~~l~G  275 (325)
T KOG0649|consen  237 SESTCVFPI---PARVHLVDFVD--DCVLIGGEGNHVQSYTLNG  275 (325)
T ss_pred             CCceEEEec---ccceeEeeeec--ceEEEeccccceeeeeecc
Confidence            999888874   55788899964  4566777777888888754

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=1.3e-13  Score=126.06  Aligned_cols=295  Identities=13%  Similarity=0.147  Sum_probs=193.4

Q ss_pred             cCCCCCCceEEEEEeCCCCEEEE-Ee-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977           39 FSDVDEIELISVSWNQDYGCFAA-GT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~g~~la~-g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i  116 (415)
                      +.-+|...-+.|..+|||+++.+ |. .-.|++||+......+...+........  ..+.|...++--..|     ..|
T Consensus        46 Qdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~fe--iLsDD~SK~v~L~~D-----R~I  118 (703)
T KOG2321|consen   46 QDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFE--ILSDDYSKSVFLQND-----RTI  118 (703)
T ss_pred             HhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEE--EeccchhhheEeecC-----cee
Confidence            34567788899999999998765 55 8899999999877777766533322221  122333222222222     555


Q ss_pred             EEEECCCCCEEEEEEccCceeEEEEcC-C-eEEEE-eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeC
Q 014977          117 IIWDDHQSRCIGEFAFRSDVRSVKLSR-D-RIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG  193 (415)
Q Consensus       117 ~vwd~~~~~~~~~~~~~~~i~~l~~~~-~-~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  193 (415)
                      .+..  .+..-..+..+..-.+|+++. . ..+++ ....|+-++++.|+-+..+......+.++.+..  -+.+|++ |
T Consensus       119 efHa--k~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~--~hgLla~-G  193 (703)
T KOG2321|consen  119 EFHA--KYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINE--EHGLLAC-G  193 (703)
T ss_pred             eehh--hcCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecC--ccceEEe-c
Confidence            4433  122222233344445566653 2 23333 778899999999999999887776556665554  4456665 8


Q ss_pred             CccCeEEEEEcCCcc-eEEE------ecCcc-----ceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCc
Q 014977          194 LQRGQVRIEHFGLNM-IKLI------NAHDS-----HIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDR  261 (415)
Q Consensus       194 ~~dg~v~i~~~~~~~-~~~~------~~~~~-----~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~  261 (415)
                      ..+|.|..|+.+.+. +..+      ..|.+     .|+++.|+.+|-.+++|..+|. +.|||+++.+++.. +.+...
T Consensus       194 t~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~-v~iyDLRa~~pl~~-kdh~~e  271 (703)
T KOG2321|consen  194 TEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGS-VLIYDLRASKPLLV-KDHGYE  271 (703)
T ss_pred             ccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCc-EEEEEcccCCceee-cccCCc
Confidence            899999999977543 2222      22333     3999999999999999999999 99999999988744 343355


Q ss_pred             ccEEEEEeCCC--CCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccc
Q 014977          262 AEIYSIALSPN--VQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMR  339 (415)
Q Consensus       262 ~~v~~l~~spd--g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (415)
                      -+|..+.|.+.  +..|++. +...++|||-.+|+...                                          
T Consensus       272 ~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~a------------------------------------------  308 (703)
T KOG2321|consen  272 LPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMA------------------------------------------  308 (703)
T ss_pred             cceeeecccccCCCceEEec-chHHhhhcccccCCcee------------------------------------------
Confidence            68999999775  3444443 45679999999988541                                          


Q ss_pred             cccCcccccccceEEEEeCCCceEEEEecCCCEEEEEEeCCcEEEEEEecCCCCcEEEeeeeecccCCC
Q 014977          340 GVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDPVHGGEMLQQEYVRFLKTVS  408 (415)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (415)
                                    .+....+...+|.+...+.++++-.++.+..|-++..  |..  ..|.+|+++..
T Consensus       309 --------------siEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~L--GPa--PrWCSfLdnlT  359 (703)
T KOG2321|consen  309 --------------SIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYIPSL--GPA--PRWCSFLDNLT  359 (703)
T ss_pred             --------------eccccCCcCceeeecCCceEEEecCCCcceeEEcccc--CCC--chhhhHHHhHH
Confidence                          1111112223344444488888888899999988873  333  46899988743

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.62  E-value=5.2e-14  Score=120.49  Aligned_cols=236  Identities=14%  Similarity=0.121  Sum_probs=153.0

Q ss_pred             EEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEE
Q 014977           49 SVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIG  128 (415)
Q Consensus        49 ~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~  128 (415)
                      -++|||+|+++|+.++-.+.|-|.++.+.....   ..-..+..+.|..+..++..+.    |.++.|.+|++...+-..
T Consensus        13 ~c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf---~cldki~yieW~ads~~ilC~~----yk~~~vqvwsl~Qpew~c   85 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRYRLVIRDSETLQLHQLF---LCLDKIVYIEWKADSCHILCVA----YKDPKVQVWSLVQPEWYC   85 (447)
T ss_pred             ceeECCCCCeeeeeeeeEEEEeccchhhHHHHH---HHHHHhhheeeeccceeeeeee----eccceEEEEEeecceeEE
Confidence            468999999999999778888888875532211   1122345566666665544432    234899999999988888


Q ss_pred             EEE-ccCceeEEEEcCCeEEEE----eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCc--------
Q 014977          129 EFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ--------  195 (415)
Q Consensus       129 ~~~-~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~--------  195 (415)
                      .+. ....+..++|+|||+.+.    .+-.|.+|.+.+.+....- -...  .+-.+++++++++.+.....        
T Consensus        86 kIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~-~pK~--~~kg~~f~~dg~f~ai~sRrDCkdyv~i  162 (447)
T KOG4497|consen   86 KIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP-HPKT--NVKGYAFHPDGQFCAILSRRDCKDYVQI  162 (447)
T ss_pred             EeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec-cccc--CceeEEECCCCceeeeeecccHHHHHHH
Confidence            887 678899999999998777    5789999999876654322 2222  23445555566665543221        


Q ss_pred             --------------------------cC-eEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCC
Q 014977          196 --------------------------RG-QVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVD  248 (415)
Q Consensus       196 --------------------------dg-~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~  248 (415)
                                                || .+.+|+.-.+.......-.-.+..++|+|.+++|++|+.|+. ++|.+--+
T Consensus       163 ~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~-lrvlnh~t  241 (447)
T KOG4497|consen  163 SSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQM-LRVLNHFT  241 (447)
T ss_pred             HhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchh-hhhhceee
Confidence                                      12 222244332222222223457889999999999999999998 88754322


Q ss_pred             Cc------------------------------------------------------------EEEEEec----CCCcccE
Q 014977          249 GT------------------------------------------------------------RLQEVRR----GVDRAEI  264 (415)
Q Consensus       249 ~~------------------------------------------------------------~~~~~~~----~~~~~~v  264 (415)
                      .+                                                            .+..++.    ......+
T Consensus       242 Wk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~  321 (447)
T KOG4497|consen  242 WKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGA  321 (447)
T ss_pred             eeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCccccc
Confidence            10                                                            0111110    0012346


Q ss_pred             EEEEeCCCCCEEEEEeCC--CeEEEEEceeccc
Q 014977          265 YSIALSPNVQWLAVASDK--GTVHIFSLRVRVV  295 (415)
Q Consensus       265 ~~l~~spdg~~l~s~s~d--g~i~vwd~~~~~~  295 (415)
                      .-++|++|..++++-.+.  +.+.+||+++.+-
T Consensus       322 g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l  354 (447)
T KOG4497|consen  322 GKLAFSCDSTYAATRNDKYPNALWLWDLQNLKL  354 (447)
T ss_pred             ceeeecCCceEEeeecCCCCceEEEEechhhhh
Confidence            678999999999987653  5799999998763

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.62  E-value=1.6e-14  Score=119.96  Aligned_cols=240  Identities=12%  Similarity=0.148  Sum_probs=169.2

Q ss_pred             ccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE--ccCceeEEEEcCCeEEEE--eCCeEEEEE
Q 014977           83 LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA--FRSDVRSVKLSRDRIVVV--LEHKIYVYS  158 (415)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~--~~~~i~~l~~~~~~~~~~--~d~~i~iwd  158 (415)
                      ++.+...+.++.|..+..+ .++...     |.|++|++.+...+..++  +...|+.+..-|++.+..  .|..+.+|+
T Consensus        10 LRp~~~~v~s~~fqa~~rL-~sg~~~-----G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~   83 (323)
T KOG0322|consen   10 LRPHSSSVTSVLFQANERL-MSGLSV-----GIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWT   83 (323)
T ss_pred             eccccchheehhhccchhh-hccccc-----ceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEE
Confidence            3477888889999988874 444544     999999999988777777  678899999999876666  788888888


Q ss_pred             cCCceeeeE-------------------------EeccC--------------------------CCcceEEEe--cCCC
Q 014977          159 FVDLKLLHQ-------------------------IETLA--------------------------NLRGLCCLS--HHSS  185 (415)
Q Consensus       159 ~~~~~~~~~-------------------------~~~~~--------------------------~~~~~~~~~--~~~~  185 (415)
                      +.-+..+..                         +.-+.                          ....++++.  ....
T Consensus        84 ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~  163 (323)
T KOG0322|consen   84 IAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACG  163 (323)
T ss_pred             ccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccccc
Confidence            743211100                         00000                          000122322  2222


Q ss_pred             ceEEEEeCCccCeEEEEEcCCc-----------ceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC--cE-
Q 014977          186 TSVLACPGLQRGQVRIEHFGLN-----------MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG--TR-  251 (415)
Q Consensus       186 ~~~l~~~g~~dg~v~i~~~~~~-----------~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~--~~-  251 (415)
                      ..+++.+|.++|.|.+|+.+.+           .+.....|..++.++.+.+.-..=++|+.+.. +..|.+...  .. 
T Consensus       164 s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dk-l~~~Sl~~s~gslq  242 (323)
T KOG0322|consen  164 STFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDK-LVMYSLNHSTGSLQ  242 (323)
T ss_pred             ceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccc-ceeeeeccccCccc
Confidence            3456667999999999998873           33344578999999999876555677777777 888887543  21 


Q ss_pred             -EEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCC
Q 014977          252 -LQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGAN  330 (415)
Q Consensus       252 -~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (415)
                       ..++..  ....|..+.+-||++.+|+++.|+.|+||..++......                                
T Consensus       243 ~~~e~~l--knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAV--------------------------------  288 (323)
T KOG0322|consen  243 IRKEITL--KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAV--------------------------------  288 (323)
T ss_pred             ccceEEe--cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhh--------------------------------
Confidence             112222  223588899999999999999999999999999875421                                


Q ss_pred             CCCcccccccccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEE
Q 014977          331 PGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSF  387 (415)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~  387 (415)
                                              .+.....++.++|+++ +.+++++.|+.|-.|++
T Consensus       289 ------------------------LkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  289 ------------------------LKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             ------------------------hhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence                                    1222356778999999 88888888999999986

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.61  E-value=2.6e-15  Score=133.81  Aligned_cols=197  Identities=15%  Similarity=0.169  Sum_probs=169.1

Q ss_pred             CeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE--eCCeEEEEEcCCcee
Q 014977           87 GFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKL  164 (415)
Q Consensus        87 ~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~  164 (415)
                      ..+...+.|..+|..++.++..     |.|..+|+.+++...++.....|.++.|-.+..+++  ....++||| ..|..
T Consensus       129 eFGPY~~~ytrnGrhlllgGrK-----GHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD-~~GtE  202 (545)
T KOG1272|consen  129 EFGPYHLDYTRNGRHLLLGGRK-----GHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYD-NNGTE  202 (545)
T ss_pred             ccCCeeeeecCCccEEEecCCc-----cceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEec-CCCcE
Confidence            3445677889999988888887     999999999999999999899999999999888887  789999999 56777


Q ss_pred             eeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEE-EEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEE
Q 014977          165 LHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI-EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRI  243 (415)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i-~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~v  243 (415)
                      ++.+..+.   .+..+.+-|...+|+ +++..|.++. +...++.+..+....+.+..++-+|-...+-+|..+|+ |.+
T Consensus       203 lHClk~~~---~v~rLeFLPyHfLL~-~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGt-VSl  277 (545)
T KOG1272|consen  203 LHCLKRHI---RVARLEFLPYHFLLV-AASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGT-VSL  277 (545)
T ss_pred             EeehhhcC---chhhhcccchhheee-ecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCce-EEe
Confidence            77777655   455566666555555 4778899888 66777888888888899999999999999999999999 999


Q ss_pred             EECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977          244 FNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       244 wd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                      |...+.+++..+..  |.++|.+|++.++|+|+|+.+.|..++|||++.-...
T Consensus       278 WSP~skePLvKiLc--H~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql  328 (545)
T KOG1272|consen  278 WSPNSKEPLVKILC--HRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQL  328 (545)
T ss_pred             cCCCCcchHHHHHh--cCCCcceEEECCCCcEEeecccccceeEeeecccccc
Confidence            99998888877777  8999999999999999999999999999999987744

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=3.6e-14  Score=122.06  Aligned_cols=184  Identities=11%  Similarity=0.164  Sum_probs=137.5

Q ss_pred             eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCc---ceEEEecCc-cceEEEEeC
Q 014977          150 LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN---MIKLINAHD-SHIACFTLT  225 (415)
Q Consensus       150 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~---~~~~~~~~~-~~i~~l~~s  225 (415)
                      ..|.|++||..+++.+..++++......+.|.-... ...+.+++.||+|++|+.+..   .......+. .+..+++.+
T Consensus        48 Sngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds-~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~n  126 (376)
T KOG1188|consen   48 SNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDS-PHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLN  126 (376)
T ss_pred             cCCeEEEEeccchhhhheecCCCCcccceEEecCCC-CCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeecc
Confidence            799999999999999999998887677777766432 233445789999999998753   233444554 567788877


Q ss_pred             CCCCEEEEEeC----CCcEEEEEECCCCcE-EEEEecCCCcccEEEEEeCC-CCCEEEEEeCCCeEEEEEceecccCCCC
Q 014977          226 LDGLLLATAST----RGTLIRIFNTVDGTR-LQEVRRGVDRAEIYSIALSP-NVQWLAVASDKGTVHIFSLRVRVVGEDS  299 (415)
Q Consensus       226 p~g~~l~s~s~----dg~~I~vwd~~~~~~-~~~~~~~~~~~~v~~l~~sp-dg~~l~s~s~dg~i~vwd~~~~~~~~~~  299 (415)
                      -.++.+++|.+    +-. |.+||++..+. +..+... |...|+++.|+| +..+|++|+.||-|.|||++....... 
T Consensus       127 ck~~ii~~GtE~~~s~A~-v~lwDvR~~qq~l~~~~eS-H~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDa-  203 (376)
T KOG1188|consen  127 CKKNIIACGTELTRSDAS-VVLWDVRSEQQLLRQLNES-HNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDA-  203 (376)
T ss_pred             CcCCeEEeccccccCceE-EEEEEeccccchhhhhhhh-ccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhh-
Confidence            78888888764    455 99999998876 6555543 788999999999 557999999999999999987743210 


Q ss_pred             CCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC--CEEEEEE
Q 014977          300 SSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ--NTVVIVS  377 (415)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~  377 (415)
                                                                |-..+         .. ...+..++|..+  .+|.+.+
T Consensus       204 ------------------------------------------L~~vi---------N~-~sSI~~igw~~~~ykrI~clT  231 (376)
T KOG1188|consen  204 ------------------------------------------LLHVI---------NH-GSSIHLIGWLSKKYKRIMCLT  231 (376)
T ss_pred             ------------------------------------------HHHhh---------cc-cceeeeeeeecCCcceEEEEE
Confidence                                                      00011         10 123456889888  5999999


Q ss_pred             eCCcEEEEEEec
Q 014977          378 MDGSFYRCSFDP  389 (415)
Q Consensus       378 ~dg~~~~~~~~~  389 (415)
                      ..+.+++|++..
T Consensus       232 H~Etf~~~ele~  243 (376)
T KOG1188|consen  232 HMETFAIYELED  243 (376)
T ss_pred             ccCceeEEEccC
Confidence            999999999976

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=1.4e-13  Score=131.53  Aligned_cols=215  Identities=11%  Similarity=0.049  Sum_probs=143.1

Q ss_pred             cCCCCCCceEEEEEeCCCCEEEEEe-C---CcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecC-CCCCCCC
Q 014977           39 FSDVDEIELISVSWNQDYGCFAAGT-S---CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAG-DNSQYPP  113 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~g~~la~g~-d---~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~~~~  113 (415)
                      ....|...+.+++|+|||+.|+..+ +   ..|.+||+.+.+......+.++   .....|+|++..++.+. .+     
T Consensus       198 ~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~-----  269 (429)
T PRK01742        198 IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKD-----  269 (429)
T ss_pred             EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecC-----
Confidence            3456778899999999999999876 3   3599999987554333333222   33578999987666543 34     


Q ss_pred             Ce--EEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE----eCCeEEEEEcCC-ceeeeEEeccCCCcceEEEecCCCc
Q 014977          114 TK--VIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV----LEHKIYVYSFVD-LKLLHQIETLANLRGLCCLSHHSST  186 (415)
Q Consensus       114 ~~--i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  186 (415)
                      +.  |.+||+.+++......+...+....|+||+..++    .++...||++.. +.....+ .+..    ....++|++
T Consensus       270 g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~----~~~~~SpDG  344 (429)
T PRK01742        270 GVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG----YSAQISADG  344 (429)
T ss_pred             CcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC----CCccCCCCC
Confidence            54  4555776666544434666788999999998766    356777777633 2222222 2221    234567778


Q ss_pred             eEEEEeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEEC--CCCcEEEEEecCCCcccE
Q 014977          187 SVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNT--VDGTRLQEVRRGVDRAEI  264 (415)
Q Consensus       187 ~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~--~~~~~~~~~~~~~~~~~v  264 (415)
                      ..+++.+ .++.+ +|+........+..+ .....+.|+|+|++|+.++.++. +.+|++  .+|+.+..+..  +.+.+
T Consensus       345 ~~ia~~~-~~~i~-~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~-~~~l~~~~~~G~~~~~l~~--~~g~~  418 (429)
T PRK01742        345 KTLVMIN-GDNVV-KQDLTSGSTEVLSST-FLDESPSISPNGIMIIYSSTQGL-GKVLQLVSADGRFKARLPG--SDGQV  418 (429)
T ss_pred             CEEEEEc-CCCEE-EEECCCCCeEEecCC-CCCCCceECCCCCEEEEEEcCCC-ceEEEEEECCCCceEEccC--CCCCC
Confidence            8887755 35444 455554433333322 23456789999999999999998 887775  36788888876  66778


Q ss_pred             EEEEeCCC
Q 014977          265 YSIALSPN  272 (415)
Q Consensus       265 ~~l~~spd  272 (415)
                      ...+|+|-
T Consensus       419 ~~p~wsp~  426 (429)
T PRK01742        419 KFPAWSPY  426 (429)
T ss_pred             CCcccCCC
Confidence            89999984

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=6.4e-13  Score=126.96  Aligned_cols=169  Identities=14%  Similarity=0.034  Sum_probs=118.2

Q ss_pred             CeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---e---CCeEEEEEcCCceeee--EEeccCCCcceEEEecCC
Q 014977          114 TKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---L---EHKIYVYSFVDLKLLH--QIETLANLRGLCCLSHHS  184 (415)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~---d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~  184 (415)
                      ..|.+||..... .+.+. +...+....|+|||+.++   .   +..|++||+.+++...  .+.++     .....++|
T Consensus       184 ~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~-----~~~~~wSP  257 (429)
T PRK01742        184 YEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH-----NGAPAFSP  257 (429)
T ss_pred             EEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc-----cCceeECC
Confidence            789999976555 34443 677899999999998887   1   2479999998875432  22222     22456677


Q ss_pred             CceEEEEeCCccCeEEEE--EcCCcceEEEecCccceEEEEeCCCCCEEEEEe-CCCcEEEEEECCCC-cEEEEEecCCC
Q 014977          185 STSVLACPGLQRGQVRIE--HFGLNMIKLINAHDSHIACFTLTLDGLLLATAS-TRGTLIRIFNTVDG-TRLQEVRRGVD  260 (415)
Q Consensus       185 ~~~~l~~~g~~dg~v~i~--~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s-~dg~~I~vwd~~~~-~~~~~~~~~~~  260 (415)
                      ++..|+++...+|.+.||  +........+..+...+....|+|||+.|+..+ .++. ..||++... .....+ .  +
T Consensus       258 DG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~-~~I~~~~~~~~~~~~l-~--~  333 (429)
T PRK01742        258 DGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGS-PQVYRMSASGGGASLV-G--G  333 (429)
T ss_pred             CCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCC-ceEEEEECCCCCeEEe-c--C
Confidence            787888766667876664  555566777777777888999999999777555 5677 888876432 222233 2  2


Q ss_pred             cccEEEEEeCCCCCEEEEEeCCCeEEEEEceeccc
Q 014977          261 RAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV  295 (415)
Q Consensus       261 ~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~  295 (415)
                      ..  ....|+|||++|+..+.++ +.+||+.+++.
T Consensus       334 ~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~  365 (429)
T PRK01742        334 RG--YSAQISADGKTLVMINGDN-VVKQDLTSGST  365 (429)
T ss_pred             CC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCe
Confidence            22  4578999999999888766 66699987753

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.58  E-value=2.9e-13  Score=115.61  Aligned_cols=199  Identities=15%  Similarity=0.152  Sum_probs=150.2

Q ss_pred             CCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCC---EEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEE
Q 014977           85 SGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR---CIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVY  157 (415)
Q Consensus        85 ~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~---~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iw  157 (415)
                      .....+.+.+|+.+...++.+-..     ..|.||.....+   ...+++ |...|+.++|+|....|+   .|..-++|
T Consensus         8 ~~~~pitchAwn~drt~iAv~~~~-----~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw   82 (361)
T KOG1523|consen    8 RLLEPITCHAWNSDRTQIAVSPNN-----HEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVW   82 (361)
T ss_pred             eccCceeeeeecCCCceEEeccCC-----ceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccc
Confidence            345568899999999988888776     899999976654   455665 899999999999987776   79999999


Q ss_pred             Ec-CCcee--eeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceE-----EEecCccceEEEEeCCCCC
Q 014977          158 SF-VDLKL--LHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIK-----LINAHDSHIACFTLTLDGL  229 (415)
Q Consensus       158 d~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~-----~~~~~~~~i~~l~~sp~g~  229 (415)
                      .. ..++-  .-.+..+..  ...++.|+|....+|+ |+....|.|+-+..+.--     .-+.+.+.|.++.|+|++-
T Consensus        83 ~~~~~~~WkptlvLlRiNr--AAt~V~WsP~enkFAV-gSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnV  159 (361)
T KOG1523|consen   83 TQPSGGTWKPTLVLLRINR--AATCVKWSPKENKFAV-GSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNV  159 (361)
T ss_pred             ccCCCCeeccceeEEEecc--ceeeEeecCcCceEEe-ccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcc
Confidence            98 44433  333333443  4556666666667776 777888888666654322     3345678899999999999


Q ss_pred             EEEEEeCCCcEEEEEECC-----C-------------CcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEce
Q 014977          230 LLATASTRGTLIRIFNTV-----D-------------GTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR  291 (415)
Q Consensus       230 ~l~s~s~dg~~I~vwd~~-----~-------------~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~  291 (415)
                      +|++|+.|+. .+||...     .             |+++.++..  ..+.+..+.|+|+|..|+-.+.|.++.+=|-.
T Consensus       160 LlaaGs~D~k-~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~--~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~  236 (361)
T KOG1523|consen  160 LLAAGSTDGK-CRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASS--SGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAA  236 (361)
T ss_pred             eecccccCcc-eeEEEEeeeccccCCCCCCCccCCcHHHHHHhhcc--CCCceeeeEeCCCCCEeeEecCCCceEEeecC
Confidence            9999999999 9998642     1             233334432  45689999999999999999999999998877


Q ss_pred             ecc
Q 014977          292 VRV  294 (415)
Q Consensus       292 ~~~  294 (415)
                      .+.
T Consensus       237 ~p~  239 (361)
T KOG1523|consen  237 GPS  239 (361)
T ss_pred             CCc
Confidence            665

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.58  E-value=2.3e-12  Score=106.13  Aligned_cols=234  Identities=12%  Similarity=0.144  Sum_probs=159.0

Q ss_pred             cCCCCCCceEEEEEeCCCCEEEEEeCCcEEEEEccCCce------eEEEecc-----CCCeeEEEEeeeCCeEEEEecCC
Q 014977           39 FSDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKE------TFRRDLK-----SGGFRIVEMLFRCNILALVGAGD  107 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~------~~~~~~~-----~~~~~~~~~~~~~~~~~l~s~~~  107 (415)
                      ...+|+++|+.++|.  ..+|++|+||.|+-|.+....+      ..+...+     ..-..|.+|...|...-+..++.
T Consensus        57 ~eqahdgpiy~~~f~--d~~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgG  134 (325)
T KOG0649|consen   57 PEQAHDGPIYYLAFH--DDFLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGG  134 (325)
T ss_pred             eccccCCCeeeeeee--hhheeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecC
Confidence            348899999999999  4588888899999998864332      1111111     11223556666664333333334


Q ss_pred             CCCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEE-cCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCC--------c
Q 014977          108 NSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKL-SRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANL--------R  175 (415)
Q Consensus       108 d~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~-~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~--------~  175 (415)
                      |     +.+.-||+++|+..++++ |...|.++.- +.+++++.  .||++++||+++++.+..+....++        .
T Consensus       135 D-----~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~  209 (325)
T KOG0649|consen  135 D-----GVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGK  209 (325)
T ss_pred             C-----eEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCc
Confidence            4     999999999999999999 9999999998 66677776  8999999999999999888654332        2


Q ss_pred             ceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEE
Q 014977          176 GLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEV  255 (415)
Q Consensus       176 ~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~  255 (415)
                      .+.+++.+.+  ++++ | ....+.+|..+.........-..++..+.|..|  .+++++..+. |.-|.+ .|.....+
T Consensus       210 wigala~~ed--WlvC-G-gGp~lslwhLrsse~t~vfpipa~v~~v~F~~d--~vl~~G~g~~-v~~~~l-~Gvl~a~i  281 (325)
T KOG0649|consen  210 WIGALAVNED--WLVC-G-GGPKLSLWHLRSSESTCVFPIPARVHLVDFVDD--CVLIGGEGNH-VQSYTL-NGVLQANI  281 (325)
T ss_pred             eeEEEeccCc--eEEe-c-CCCceeEEeccCCCceEEEecccceeEeeeecc--eEEEeccccc-eeeeee-ccEEEEec
Confidence            4456666544  6766 3 345688898876554444445667777778543  5777777777 999976 56655555


Q ss_pred             ecCCCcccEEEEEeCCCC-CEEEEEeCCCeEEEEE
Q 014977          256 RRGVDRAEIYSIALSPNV-QWLAVASDKGTVHIFS  289 (415)
Q Consensus       256 ~~~~~~~~v~~l~~spdg-~~l~s~s~dg~i~vwd  289 (415)
                      ...  ....++..|+... ++|-.++....+.|+.
T Consensus       282 p~~--s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~  314 (325)
T KOG0649|consen  282 PVE--STACYSASWQTSPIKFISIAGFSNKLHILK  314 (325)
T ss_pred             cCC--ccceeeecccCCceEEEEecccceeeeeee
Confidence            553  2245556565433 4555667777777763

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.57  E-value=3.6e-13  Score=122.40  Aligned_cols=227  Identities=15%  Similarity=0.138  Sum_probs=142.1

Q ss_pred             ceEEEEEeCCCCEEEEEeCCcEEEEEccCCc----eeEEEeccCCCeeEEEEe---eeCCeEEEEecCCCCCCCCCeEEE
Q 014977           46 ELISVSWNQDYGCFAAGTSCGFRIYNCEPFK----ETFRRDLKSGGFRIVEML---FRCNILALVGAGDNSQYPPTKVII  118 (415)
Q Consensus        46 ~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~----~~~~~~~~~~~~~~~~~~---~~~~~~~l~s~~~d~~~~~~~i~v  118 (415)
                      .+....++-.|++|+..-...+.+|+.....    .+.+..+....-.+.++.   -.+.+.-+..+-..     |.|.+
T Consensus       125 ~~~~~~~~~~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~t-----Gqvq~  199 (636)
T KOG2394|consen  125 IVTNTNQSGKGDRLCFNVGRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTT-----GQVQL  199 (636)
T ss_pred             ceeeccccCCCCEEEEecCCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeecc-----CceEE
Confidence            4555556667778877667778888876311    111122212222222221   12333333333222     88888


Q ss_pred             EECCCCCEEEEEE-----ccCceeEEEEcCC--eEEEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEE
Q 014977          119 WDDHQSRCIGEFA-----FRSDVRSVKLSRD--RIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVL  189 (415)
Q Consensus       119 wd~~~~~~~~~~~-----~~~~i~~l~~~~~--~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  189 (415)
                      .|....+..+.+.     .+..++++.|-|.  +.+++  .+|.+++||..-      ....    ...++...+++..+
T Consensus       200 idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~------~~~~----t~p~~~~~k~~~~f  269 (636)
T KOG2394|consen  200 IDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI------VCGA----TAPSYQALKDGDQF  269 (636)
T ss_pred             ecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccc------cccC----CCCcccccCCCCee
Confidence            8865533322222     3578999999874  44555  799999999611      0011    11122222222223


Q ss_pred             EEeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEe
Q 014977          190 ACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIAL  269 (415)
Q Consensus       190 ~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~  269 (415)
                      +.--+.      ......++..+..-.+.|+..+|+|||++||+.+.||. ++|||..+.+++..++.  .-+...+++|
T Consensus       270 ~i~t~k------sk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGf-LRvF~fdt~eLlg~mkS--YFGGLLCvcW  340 (636)
T KOG2394|consen  270 AILTSK------SKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGF-LRIFDFDTQELLGVMKS--YFGGLLCVCW  340 (636)
T ss_pred             EEeeee------ccccCCccceeEeccccccceeEcCCCceEEEEecCce-EEEeeccHHHHHHHHHh--hccceEEEEE
Confidence            221000      11122455555555679999999999999999999999 99999998888777665  5567999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEEceecccC
Q 014977          270 SPNVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       270 spdg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                      ||||++|++|++|.-|.||.+...+..
T Consensus       341 SPDGKyIvtGGEDDLVtVwSf~erRVV  367 (636)
T KOG2394|consen  341 SPDGKYIVTGGEDDLVTVWSFEERRVV  367 (636)
T ss_pred             cCCccEEEecCCcceEEEEEeccceEE
Confidence            999999999999999999999887753

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.56  E-value=7.7e-14  Score=123.30  Aligned_cols=190  Identities=15%  Similarity=0.194  Sum_probs=140.9

Q ss_pred             EEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCE
Q 014977           48 ISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRC  126 (415)
Q Consensus        48 ~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~  126 (415)
                      ..++|+++|..|++|. ||.+|||++........  ...|+..|-++.|++|++++++-+.      ...+||++.+|..
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~--e~~~~~eV~DL~FS~dgk~lasig~------d~~~VW~~~~g~~  219 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILE--EIAHHAEVKDLDFSPDGKFLASIGA------DSARVWSVNTGAA  219 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhh--hHhhcCccccceeCCCCcEEEEecC------CceEEEEeccCch
Confidence            7899999999999999 99999999876555444  3378889999999999999999887      4899999999977


Q ss_pred             EEEEE---ccCceeEEEEcCCe-----EEEE---eCCeEEEEEcCCcee---eeEEeccCCCcceEEEecCCCceEEEEe
Q 014977          127 IGEFA---FRSDVRSVKLSRDR-----IVVV---LEHKIYVYSFVDLKL---LHQIETLANLRGLCCLSHHSSTSVLACP  192 (415)
Q Consensus       127 ~~~~~---~~~~i~~l~~~~~~-----~~~~---~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~  192 (415)
                      +....   -+.....+.|+.|+     .+++   ..+.|..||+...+.   +...+.-.....+.+++.+.+|+++|. 
T Consensus       220 ~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~Al-  298 (398)
T KOG0771|consen  220 LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLAL-  298 (398)
T ss_pred             hhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEE-
Confidence            76665   24456677787766     2222   356677766632211   111111111125677888888999887 


Q ss_pred             CCccCeEEEEE-cCCcceEEE-ecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECC
Q 014977          193 GLQRGQVRIEH-FGLNMIKLI-NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTV  247 (415)
Q Consensus       193 g~~dg~v~i~~-~~~~~~~~~-~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~  247 (415)
                      |+.||.|.|++ .+.+.++.. +.|...|+.+.|+|+.+++++.+.+.. +.|..+.
T Consensus       299 GT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~-~~v~~l~  354 (398)
T KOG0771|consen  299 GTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNE-AAVTKLA  354 (398)
T ss_pred             eccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCc-eeEEEEe
Confidence            78899999954 444554443 579999999999999999999888888 8887664

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.55  E-value=7.3e-14  Score=125.42  Aligned_cols=253  Identities=11%  Similarity=0.100  Sum_probs=180.8

Q ss_pred             CCccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC--CeEEEEecCCCCCCC
Q 014977           36 QTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC--NILALVGAGDNSQYP  112 (415)
Q Consensus        36 ~~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~d~~~~  112 (415)
                      +.....+|.+.|..|.|+..|..|++|+ |..|.+||+......+...- +|...+....|-|  +..-+++++.|    
T Consensus       134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~S-GH~~NvfQaKFiP~s~d~ti~~~s~d----  208 (559)
T KOG1334|consen  134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFES-GHCNNVFQAKFIPFSGDRTIVTSSRD----  208 (559)
T ss_pred             hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCccccccc-ccccchhhhhccCCCCCcCceecccc----
Confidence            3456789999999999999999999999 99999999988766655433 6777777766766  34667777777    


Q ss_pred             CCeEEEEECC-CCCEEEE---EEccCceeEEEEcCCeEEEE----eCCeEEEEEcCCceeeeEEe--ccCC--CcceEEE
Q 014977          113 PTKVIIWDDH-QSRCIGE---FAFRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIE--TLAN--LRGLCCL  180 (415)
Q Consensus       113 ~~~i~vwd~~-~~~~~~~---~~~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~~--~~~~--~~~~~~~  180 (415)
                       |.+++=.+. ++.+..+   .+|.++|.-++.-|+....+    .|+.+.-+|+++......+.  .+..  .+....+
T Consensus       209 -gqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~I  287 (559)
T KOG1334|consen  209 -GQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTI  287 (559)
T ss_pred             -CceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeE
Confidence             999988754 4443322   33899999999988766555    68889999997765443332  1222  2566777


Q ss_pred             ecCCCceEEEEeCCccCeEEEEEcCCc-------ceEEEe------cCccceEEEEeCCCCCEEEEEeCCCcEEEEEECC
Q 014977          181 SHHSSTSVLACPGLQRGQVRIEHFGLN-------MIKLIN------AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTV  247 (415)
Q Consensus       181 ~~~~~~~~l~~~g~~dg~v~i~~~~~~-------~~~~~~------~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~  247 (415)
                      +.+|.+.+..++|+.|..+++++.+.-       .+..+.      ...-.|++++|+.++.-|.++-.|-. |+++.-.
T Consensus       288 a~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~-IYLF~~~  366 (559)
T KOG1334|consen  288 AVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDED-IYLFNKS  366 (559)
T ss_pred             ecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccc-eEEeccc
Confidence            888877755556888999999765431       122222      22446899999987776666666777 9999533


Q ss_pred             C--C----------cEEEE-EecCCCcccEEEEEe-CCCCCEEEEEeCCCeEEEEEceeccc
Q 014977          248 D--G----------TRLQE-VRRGVDRAEIYSIAL-SPNVQWLAVASDKGTVHIFSLRVRVV  295 (415)
Q Consensus       248 ~--~----------~~~~~-~~~~~~~~~v~~l~~-spdg~~l~s~s~dg~i~vwd~~~~~~  295 (415)
                      -  |          ..+.. ++++.....|..+-| -|...|+++|++=|.|.||+-.+++-
T Consensus       367 ~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~ei  428 (559)
T KOG1334|consen  367 MGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEI  428 (559)
T ss_pred             cccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHH
Confidence            2  2          12223 667544557888765 58889999999999999999888763

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.55  E-value=4.3e-11  Score=104.44  Aligned_cols=231  Identities=12%  Similarity=0.166  Sum_probs=162.1

Q ss_pred             eEEEEEeCCCCEEEEEe-C--CcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCC
Q 014977           47 LISVSWNQDYGCFAAGT-S--CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ  123 (415)
Q Consensus        47 V~~l~~sp~g~~la~g~-d--~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~  123 (415)
                      |--+-|+  ..++|..+ +  +.++++++.....+....+   ...+.++.++.+...++-.        ..|.|||+++
T Consensus        49 IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~f---pt~IL~VrmNr~RLvV~Le--------e~IyIydI~~  115 (391)
T KOG2110|consen   49 IVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTICEIFF---PTSILAVRMNRKRLVVCLE--------ESIYIYDIKD  115 (391)
T ss_pred             EEEeecc--cceeEEEecCCCceEEEEEcccCceEEEEec---CCceEEEEEccceEEEEEc--------ccEEEEeccc
Confidence            4444454  34666665 3  3488888877666666544   4457777777665554442        5699999999


Q ss_pred             CCEEEEEE----ccCceeEEEEcCCeEEEE-----eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCC
Q 014977          124 SRCIGEFA----FRSDVRSVKLSRDRIVVV-----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL  194 (415)
Q Consensus       124 ~~~~~~~~----~~~~i~~l~~~~~~~~~~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  194 (415)
                      .+.+.++.    +...+.++.+++.+.+++     ..|.|.+||+.+.+.+..+..|..  .+.+++++++|.+||+ ++
T Consensus       116 MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~--~lAalafs~~G~llAT-AS  192 (391)
T KOG2110|consen  116 MKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKG--PLAALAFSPDGTLLAT-AS  192 (391)
T ss_pred             ceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCC--ceeEEEECCCCCEEEE-ec
Confidence            99999887    345577777888888888     579999999999999999999988  5556666777888887 66


Q ss_pred             ccCe-EEEEE-cCCcceEEEecC--ccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCc--------------------
Q 014977          195 QRGQ-VRIEH-FGLNMIKLINAH--DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT--------------------  250 (415)
Q Consensus       195 ~dg~-v~i~~-~~~~~~~~~~~~--~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~--------------------  250 (415)
                      +.|+ |+++. .+++.+..++..  ...|.+++|+|++++|++.+..++ |+||.+..-.                    
T Consensus       193 eKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeT-VHiFKL~~~~~~~~~~p~~~~~~~~~~sk~  271 (391)
T KOG2110|consen  193 EKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTET-VHIFKLEKVSNNPPESPTAGTSWFGKVSKA  271 (391)
T ss_pred             cCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCe-EEEEEecccccCCCCCCCCCCcccchhhhh
Confidence            7776 56644 556777777643  346889999999999999999999 9999875311                    


Q ss_pred             -----------------EEEEEecCCCcccEEEEEeC--CCCCEEEEEeCCCeEEEEEceeccc
Q 014977          251 -----------------RLQEVRRGVDRAEIYSIALS--PNVQWLAVASDKGTVHIFSLRVRVV  295 (415)
Q Consensus       251 -----------------~~~~~~~~~~~~~v~~l~~s--pdg~~l~s~s~dg~i~vwd~~~~~~  295 (415)
                                       .....+.. ..+.-..+.+.  +...++..++.||.++.|.+.-.+.
T Consensus       272 ~~sylps~V~~~~~~~R~FAt~~l~-~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~~g  334 (391)
T KOG2110|consen  272 ATSYLPSQVSSVLDQSRKFATAKLP-ESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPKEG  334 (391)
T ss_pred             hhhhcchhhhhhhhhccceeEEEcc-CCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCCCC
Confidence                             00000100 01111223333  4678899999999999999987543

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.55  E-value=3.6e-12  Score=126.21  Aligned_cols=254  Identities=11%  Similarity=0.069  Sum_probs=167.0

Q ss_pred             CCccCCCCCCceEEEEEeCCC-CEEEEEe-CCcEEEEEccCCce---e--EEEeccCCCeeEEEEeeeCCeEEEEecCCC
Q 014977           36 QTAFSDVDEIELISVSWNQDY-GCFAAGT-SCGFRIYNCEPFKE---T--FRRDLKSGGFRIVEMLFRCNILALVGAGDN  108 (415)
Q Consensus        36 ~~~~~~~h~~~V~~l~~sp~g-~~la~g~-d~~v~iw~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d  108 (415)
                      +.....+|...|..++.++.. .+|++|+ ||+|++|++.....   .  .+..+...+..+..+...+++..+|.++.|
T Consensus      1040 lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~D 1119 (1431)
T KOG1240|consen 1040 LVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKD 1119 (1431)
T ss_pred             EeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCC
Confidence            345678899999999988765 9999999 99999999864211   1  112222345556666666677777777777


Q ss_pred             CCCCCCeEEEEECCCC--C-----EEEEEE--ccCceeEEE-EcCC-eE-EEE---eCCeEEEEEcCCceeeeEEeccCC
Q 014977          109 SQYPPTKVIIWDDHQS--R-----CIGEFA--FRSDVRSVK-LSRD-RI-VVV---LEHKIYVYSFVDLKLLHQIETLAN  173 (415)
Q Consensus       109 ~~~~~~~i~vwd~~~~--~-----~~~~~~--~~~~i~~l~-~~~~-~~-~~~---~d~~i~iwd~~~~~~~~~~~~~~~  173 (415)
                           |.|++.++...  +     ..+...  ..+.+.+|. +... +. .++   ..+.|..||++.......++....
T Consensus      1120 -----G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~ 1194 (1431)
T KOG1240|consen 1120 -----GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLR 1194 (1431)
T ss_pred             -----CeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcc
Confidence                 99999997652  1     111111  234444443 3221 11 222   678899999988777666655444


Q ss_pred             CcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEE-E-ecCccceEEEEeCCCC---CEEEEEe--CCCcEEEEEEC
Q 014977          174 LRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKL-I-NAHDSHIACFTLTLDG---LLLATAS--TRGTLIRIFNT  246 (415)
Q Consensus       174 ~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~-~-~~~~~~i~~l~~sp~g---~~l~s~s--~dg~~I~vwd~  246 (415)
                      ...+..+..++.+.+++. |...|.+.+||.+.+.... . ..+..+|..+..+|-.   ...++++  ..+. |.+|++
T Consensus      1195 hG~vTSi~idp~~~Wlvi-Gts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~ne-vs~wn~ 1272 (1431)
T KOG1240|consen 1195 HGLVTSIVIDPWCNWLVI-GTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNE-VSTWNM 1272 (1431)
T ss_pred             ccceeEEEecCCceEEEE-ecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCc-eeeeec
Confidence            446777888888888876 8889999999998765332 2 2345778888777632   3444444  4667 999999


Q ss_pred             CCCcEEEEEecCC-----------------CcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977          247 VDGTRLQEVRRGV-----------------DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       247 ~~~~~~~~~~~~~-----------------~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                      .+|.+..++....                 +.-......+..-+.++.+|+.|..|+.||....+..
T Consensus      1273 ~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1273 ETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred             ccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence            9997766665420                 0111222334444568889999999999999877643

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.53  E-value=2.8e-12  Score=122.35  Aligned_cols=214  Identities=11%  Similarity=0.068  Sum_probs=141.7

Q ss_pred             cEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCe
Q 014977           66 GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDR  145 (415)
Q Consensus        66 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~  145 (415)
                      .|.+||.+......   +..+...+....|+|++..++..+..  -....|.+|++.+++..........+..+.|+|||
T Consensus       180 ~l~~~d~dg~~~~~---lt~~~~~~~~p~wSPDG~~la~~s~~--~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG  254 (429)
T PRK03629        180 ELRVSDYDGYNQFV---VHRSPQPLMSPAWSPDGSKLAYVTFE--SGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDG  254 (429)
T ss_pred             eEEEEcCCCCCCEE---eecCCCceeeeEEcCCCCEEEEEEec--CCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCC
Confidence            46777766533222   22455678889999999777653221  01268999999888765444455666778999999


Q ss_pred             EEEE----eCC--eEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEE--EcCCcceEEEecCcc
Q 014977          146 IVVV----LEH--KIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIE--HFGLNMIKLINAHDS  217 (415)
Q Consensus       146 ~~~~----~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~--~~~~~~~~~~~~~~~  217 (415)
                      ..++    .++  .|++||+.+++....... ..  ......++|++..|+++...++...||  +..+.....+..+..
T Consensus       255 ~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~-~~--~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~  331 (429)
T PRK03629        255 SKLAFALSKTGSLNLYVMDLASGQIRQVTDG-RS--NNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGS  331 (429)
T ss_pred             CEEEEEEcCCCCcEEEEEECCCCCEEEccCC-CC--CcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCC
Confidence            8777    133  699999988765433322 22  344566777788887766555555554  555555556655555


Q ss_pred             ceEEEEeCCCCCEEEEEeCC---CcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCe---EEEEEce
Q 014977          218 HIACFTLTLDGLLLATASTR---GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGT---VHIFSLR  291 (415)
Q Consensus       218 ~i~~l~~sp~g~~l~s~s~d---g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~---i~vwd~~  291 (415)
                      ......|+|||++|+..+.+   .. |.+||+.+++.. .+... .  ......|+|||++|+.++.++.   +.+++++
T Consensus       332 ~~~~~~~SpDG~~Ia~~~~~~g~~~-I~~~dl~~g~~~-~Lt~~-~--~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~  406 (429)
T PRK03629        332 QNQDADVSSDGKFMVMVSSNGGQQH-IAKQDLATGGVQ-VLTDT-F--LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD  406 (429)
T ss_pred             CccCEEECCCCCEEEEEEccCCCce-EEEEECCCCCeE-EeCCC-C--CCCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence            56778999999998876543   34 888999888653 44432 1  2346789999999999888764   6666664


Q ss_pred             e
Q 014977          292 V  292 (415)
Q Consensus       292 ~  292 (415)
                      .
T Consensus       407 G  407 (429)
T PRK03629        407 G  407 (429)
T ss_pred             C
Confidence            3

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.53  E-value=1.1e-12  Score=110.70  Aligned_cols=149  Identities=13%  Similarity=0.162  Sum_probs=104.1

Q ss_pred             eEEEEcCCeEEEE---e----------CCeEEEEEcC-CceeeeEEeccCCCcceEEEecCCCceEEE-EeCCccCeEEE
Q 014977          137 RSVKLSRDRIVVV---L----------EHKIYVYSFV-DLKLLHQIETLANLRGLCCLSHHSSTSVLA-CPGLQRGQVRI  201 (415)
Q Consensus       137 ~~l~~~~~~~~~~---~----------d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~g~~dg~v~i  201 (415)
                      ..+.|+++|..++   .          -+...+|.++ .......+..... ..+.+++|+|++..++ +.|..++.|.+
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~-~~I~~~~WsP~g~~favi~g~~~~~v~l   87 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKE-GPIHDVAWSPNGNEFAVIYGSMPAKVTL   87 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCC-CceEEEEECcCCCEEEEEEccCCcccEE
Confidence            3466777776665   1          1234444442 2233444433322 1366677777666554 44667788999


Q ss_pred             EEcCCcceEEEecCccceEEEEeCCCCCEEEEEeC---CCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEE
Q 014977          202 EHFGLNMIKLINAHDSHIACFTLTLDGLLLATAST---RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAV  278 (415)
Q Consensus       202 ~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~---dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s  278 (415)
                      |+.+.+.+..+.  ...++.+.|+|+|++|++++.   .|. |.+||+++.+.+..+.   |. .+..++|+|||++|++
T Consensus        88 yd~~~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~-l~~wd~~~~~~i~~~~---~~-~~t~~~WsPdGr~~~t  160 (194)
T PF08662_consen   88 YDVKGKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGD-LEFWDVRKKKKISTFE---HS-DATDVEWSPDGRYLAT  160 (194)
T ss_pred             EcCcccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcE-EEEEECCCCEEeeccc---cC-cEEEEEEcCCCCEEEE
Confidence            999877777664  567789999999999998864   467 9999999888887765   33 4789999999999998


Q ss_pred             EeC------CCeEEEEEceec
Q 014977          279 ASD------KGTVHIFSLRVR  293 (415)
Q Consensus       279 ~s~------dg~i~vwd~~~~  293 (415)
                      ++.      |+.++||++...
T Consensus       161 a~t~~r~~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  161 ATTSPRLRVDNGFKIWSFQGR  181 (194)
T ss_pred             EEeccceeccccEEEEEecCe
Confidence            874      678999998643

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=7.9e-12  Score=119.70  Aligned_cols=175  Identities=14%  Similarity=0.076  Sum_probs=118.6

Q ss_pred             CeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE--e----CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCce
Q 014977          114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--L----EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS  187 (415)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (415)
                      ..|.+||...+.......+...+....|+||++.++  .    ...|++||+.+++... +.....  ......++|++.
T Consensus       184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g--~~~~~~~SpDG~  260 (433)
T PRK04922        184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRG--INGAPSFSPDGR  260 (433)
T ss_pred             EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCC--CccCceECCCCC
Confidence            579999975544444344777899999999998877  1    3469999998776543 222222  223456667777


Q ss_pred             EEEEeCCccC--eEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeC-CCc-EEEEEECCCCcEEEEEecCCCccc
Q 014977          188 VLACPGLQRG--QVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATAST-RGT-LIRIFNTVDGTRLQEVRRGVDRAE  263 (415)
Q Consensus       188 ~l~~~g~~dg--~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~-dg~-~I~vwd~~~~~~~~~~~~~~~~~~  263 (415)
                      .++++.+.+|  .|++++........+..+.......+|+|||+.|+..+. ++. .|+++|+.+++.. .+..  ....
T Consensus       261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~--~g~~  337 (433)
T PRK04922        261 RLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTF--QGNY  337 (433)
T ss_pred             EEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-Eeec--CCCC
Confidence            7765544455  577788777777777777666678999999998887764 332 2666777676643 3322  2223


Q ss_pred             EEEEEeCCCCCEEEEEeCCC---eEEEEEceecc
Q 014977          264 IYSIALSPNVQWLAVASDKG---TVHIFSLRVRV  294 (415)
Q Consensus       264 v~~l~~spdg~~l~s~s~dg---~i~vwd~~~~~  294 (415)
                      ...++|+|||++|+..+.++   .|.+||+.+++
T Consensus       338 ~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~  371 (433)
T PRK04922        338 NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS  371 (433)
T ss_pred             ccCEEECCCCCEEEEEECCCCceeEEEEECCCCC
Confidence            45689999999998765443   69999987765

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.51  E-value=1.4e-12  Score=124.44  Aligned_cols=242  Identities=15%  Similarity=0.099  Sum_probs=162.5

Q ss_pred             CCCCceEEEEEeCCCC-EEEEEe-CCcEEEEEccCCcee----EEEeccCCCeeEEEEeeeCCe--EEEEecCCCCCCCC
Q 014977           42 VDEIELISVSWNQDYG-CFAAGT-SCGFRIYNCEPFKET----FRRDLKSGGFRIVEMLFRCNI--LALVGAGDNSQYPP  113 (415)
Q Consensus        42 ~h~~~V~~l~~sp~g~-~la~g~-d~~v~iw~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~--~~l~s~~~d~~~~~  113 (415)
                      .-...|.++.|+|... ++|.|. +|.|.+||+......    .......|...++.+.|..+-  .-+++++.|     
T Consensus       240 ~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssD-----  314 (555)
T KOG1587|consen  240 ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSD-----  314 (555)
T ss_pred             ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecC-----
Confidence            4467899999999665 455555 999999999865442    112224677888888887643  336777767     


Q ss_pred             CeEEEEECCCCCEEEE------E-------EccCceeEEEEcCC--eEEEE--eCCeEEEEEcCCc--------eeeeEE
Q 014977          114 TKVIIWDDHQSRCIGE------F-------AFRSDVRSVKLSRD--RIVVV--LEHKIYVYSFVDL--------KLLHQI  168 (415)
Q Consensus       114 ~~i~vwd~~~~~~~~~------~-------~~~~~i~~l~~~~~--~~~~~--~d~~i~iwd~~~~--------~~~~~~  168 (415)
                      |.|..|+++.-.....      .       .-...+++++|.+.  ..+++  ..|.|+.-+....        +.+..+
T Consensus       315 G~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~  394 (555)
T KOG1587|consen  315 GSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTF  394 (555)
T ss_pred             CcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccc
Confidence            9999998654322111      1       12346778888753  23444  6788776333221        112234


Q ss_pred             eccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcC--CcceEEEecCccceEEEEeCCCC-CEEEEEeCCCcEEEEEE
Q 014977          169 ETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG--LNMIKLINAHDSHIACFTLTLDG-LLLATASTRGTLIRIFN  245 (415)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~--~~~~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd  245 (415)
                      ..|..++..  +..+|-+..++.+++ |.+|+||...  ..++..+..+...+++++|||-. ..++++..||. |.+||
T Consensus       395 ~~h~g~v~~--v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~-l~iWD  470 (555)
T KOG1587|consen  395 ITHIGPVYA--VSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGN-LDIWD  470 (555)
T ss_pred             cccCcceEe--eecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCc-eehhh
Confidence            455554444  444444433333343 9999998766  45666677777889999999965 47888888999 99999


Q ss_pred             CCCC--cEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977          246 TVDG--TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (415)
Q Consensus       246 ~~~~--~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  294 (415)
                      +...  +++.....  .....+.+.|+++|+.|++|...|++++|++...-
T Consensus       471 Ll~~~~~Pv~s~~~--~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~l  519 (555)
T KOG1587|consen  471 LLQDDEEPVLSQKV--CSPALTRVRWSPNGKLLAVGDANGTTHILKLSESL  519 (555)
T ss_pred             hhccccCCcccccc--cccccceeecCCCCcEEEEecCCCcEEEEEcCchh
Confidence            9654  34444443  34567788899999999999999999999997554

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=3e-12  Score=122.60  Aligned_cols=214  Identities=12%  Similarity=0.057  Sum_probs=139.7

Q ss_pred             cEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCe
Q 014977           66 GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDR  145 (415)
Q Consensus        66 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~  145 (415)
                      .|.+||.+.... ..  +..+...+....|+|++..++..+...  ....|.+||+.+++......+.+......|+|||
T Consensus       185 ~l~i~D~~g~~~-~~--lt~~~~~v~~p~wSpDg~~la~~s~~~--~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG  259 (433)
T PRK04922        185 ALQVADSDGYNP-QT--ILRSAEPILSPAWSPDGKKLAYVSFER--GRSAIYVQDLATGQRELVASFRGINGAPSFSPDG  259 (433)
T ss_pred             EEEEECCCCCCc-eE--eecCCCccccccCCCCCCEEEEEecCC--CCcEEEEEECCCCCEEEeccCCCCccCceECCCC
Confidence            477777764332 21  224556678889999987777654320  1257999999888765444455566688999999


Q ss_pred             EEEE----eC--CeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCe--EEEEEcCCcceEEEecCcc
Q 014977          146 IVVV----LE--HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQ--VRIEHFGLNMIKLINAHDS  217 (415)
Q Consensus       146 ~~~~----~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~--v~i~~~~~~~~~~~~~~~~  217 (415)
                      ..++    .+  ..|++||+.+++.. .+..+..  ......+++++..|+++...+|.  |++++........+..+..
T Consensus       260 ~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~--~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~  336 (433)
T PRK04922        260 RRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFG--IDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGN  336 (433)
T ss_pred             CEEEEEEeCCCCceEEEEECCCCCeE-ECccCCC--CccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCC
Confidence            8765    23  36999999887643 3333322  22345667777788776555555  4445554444555544444


Q ss_pred             ceEEEEeCCCCCEEEEEeCCC---cEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCC---CeEEEEEce
Q 014977          218 HIACFTLTLDGLLLATASTRG---TLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK---GTVHIFSLR  291 (415)
Q Consensus       218 ~i~~l~~sp~g~~l~s~s~dg---~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d---g~i~vwd~~  291 (415)
                      ....++|+|+|++|+..+.++   . |.+||+.+++.. .+..   ........|+|||++|+..+.+   +.|+++++.
T Consensus       337 ~~~~~~~SpDG~~Ia~~~~~~~~~~-I~v~d~~~g~~~-~Lt~---~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~  411 (433)
T PRK04922        337 YNARASVSPDGKKIAMVHGSGGQYR-IAVMDLSTGSVR-TLTP---GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD  411 (433)
T ss_pred             CccCEEECCCCCEEEEEECCCCcee-EEEEECCCCCeE-ECCC---CCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence            555789999999988765433   5 999999887765 4432   1234567899999998877654   357777775


Q ss_pred             e
Q 014977          292 V  292 (415)
Q Consensus       292 ~  292 (415)
                      .
T Consensus       412 g  412 (433)
T PRK04922        412 G  412 (433)
T ss_pred             C
Confidence            4

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.51  E-value=2.6e-12  Score=109.86  Aligned_cols=229  Identities=13%  Similarity=0.125  Sum_probs=163.3

Q ss_pred             CCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCc-eeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEEC
Q 014977           44 EIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFK-ETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD  121 (415)
Q Consensus        44 ~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~  121 (415)
                      .++|+|.+|++|++.+|++. ...|.||.....+ -.....+..|...+..+.|.+....+++++.|     ..-+||..
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~d-----rnayVw~~   84 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHD-----RNAYVWTQ   84 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCC-----CCcccccc
Confidence            46799999999999999999 7799999998655 34445567888999999999999999999998     99999997


Q ss_pred             -CCCCEEEE---EEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeE--EeccCCCcceEEEecCCCceEEEEe
Q 014977          122 -HQSRCIGE---FAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQ--IETLANLRGLCCLSHHSSTSVLACP  192 (415)
Q Consensus       122 -~~~~~~~~---~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~  192 (415)
                       ..++-..+   +++....+++.|+|.+..++   ....|.||-++...-=..  .-......++.+++|++++-++++ 
T Consensus        85 ~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaa-  163 (361)
T KOG1523|consen   85 PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAA-  163 (361)
T ss_pred             CCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecc-
Confidence             44443333   34899999999999988888   456677777654321100  011111236788888888877765 


Q ss_pred             CCccCeEEEEEcCC-------------------cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCc-EE
Q 014977          193 GLQRGQVRIEHFGL-------------------NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT-RL  252 (415)
Q Consensus       193 g~~dg~v~i~~~~~-------------------~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~-~~  252 (415)
                      |+.|+.++++..--                   ..+..+....+.+..+.|+|+|..|+-.+.|.. +.+-|..... .+
T Consensus       164 Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~-v~~~da~~p~~~v  242 (361)
T KOG1523|consen  164 GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDST-VSFVDAAGPSERV  242 (361)
T ss_pred             cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCc-eEEeecCCCchhc
Confidence            88999998843211                   112233345678999999999999999999999 9999875553 33


Q ss_pred             EEEecCCCcccEEEEEeCCCCCEEEEEeCC
Q 014977          253 QEVRRGVDRAEIYSIALSPNVQWLAVASDK  282 (415)
Q Consensus       253 ~~~~~~~~~~~v~~l~~spdg~~l~s~s~d  282 (415)
                      ..+..  ..-+..++.|-.+.. ++.++.|
T Consensus       243 ~~~~~--~~lP~ls~~~ise~~-vv~ag~~  269 (361)
T KOG1523|consen  243 QSVAT--AQLPLLSVSWISENS-VVAAGYD  269 (361)
T ss_pred             cchhh--ccCCceeeEeecCCc-eeecCCC
Confidence            33333  224677777755433 3344444

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.50  E-value=2.6e-11  Score=104.23  Aligned_cols=235  Identities=10%  Similarity=0.094  Sum_probs=160.4

Q ss_pred             CceEEEEEeCCCCEEEEEe--CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCe-EEEEecCCCCCCCCCeEEEEEC
Q 014977           45 IELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNI-LALVGAGDNSQYPPTKVIIWDD  121 (415)
Q Consensus        45 ~~V~~l~~sp~g~~la~g~--d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~~~~~~i~vwd~  121 (415)
                      +.|..+.|..|.-++.++.  ++.|.+|++..-+  ..-.+..+..++....|+|++ .++.+...+     -.|.||.+
T Consensus        49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe--w~ckIdeg~agls~~~WSPdgrhiL~tseF~-----lriTVWSL  121 (447)
T KOG4497|consen   49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE--WYCKIDEGQAGLSSISWSPDGRHILLTSEFD-----LRITVWSL  121 (447)
T ss_pred             HHhhheeeeccceeeeeeeeccceEEEEEeecce--eEEEeccCCCcceeeeECCCcceEeeeecce-----eEEEEEEe
Confidence            5688899999998888777  8899999998544  333455788899999999999 566666666     89999998


Q ss_pred             CCCCEEEEEEccCceeEEEEcCCeEEEE----e-----------------------------------CCeEEEEEcCCc
Q 014977          122 HQSRCIGEFAFRSDVRSVKLSRDRIVVV----L-----------------------------------EHKIYVYSFVDL  162 (415)
Q Consensus       122 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~----~-----------------------------------d~~i~iwd~~~~  162 (415)
                      .+.+....--.+..+..++|+|||++.+    .                                   +..+.+||.--.
T Consensus       122 ~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Le  201 (447)
T KOG4497|consen  122 NTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLE  201 (447)
T ss_pred             ccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhh
Confidence            8876554333456678888888887665    1                                   122334442111


Q ss_pred             eeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEE-----EEcCC-------------------------------
Q 014977          163 KLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI-----EHFGL-------------------------------  206 (415)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i-----~~~~~-------------------------------  206 (415)
                      -.+..+   ....++...+++|-+++|++ |+.|+.+++     |..-+                               
T Consensus       202 ykv~aY---e~~lG~k~v~wsP~~qflav-GsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cL  277 (447)
T KOG4497|consen  202 YKVYAY---ERGLGLKFVEWSPCNQFLAV-GSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCL  277 (447)
T ss_pred             heeeee---eeccceeEEEeccccceEEe-eccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhccccc
Confidence            111111   11234556667777778876 889998887     32111                               


Q ss_pred             -------------------------cceEEEe------cCccceEEEEeCCCCCEEEEEeCC--CcEEEEEECCCCcEEE
Q 014977          207 -------------------------NMIKLIN------AHDSHIACFTLTLDGLLLATASTR--GTLIRIFNTVDGTRLQ  253 (415)
Q Consensus       207 -------------------------~~~~~~~------~~~~~i~~l~~sp~g~~l~s~s~d--g~~I~vwd~~~~~~~~  253 (415)
                                               ..+..++      ...-.+.-++|++|..++++-...  .. +.+||++..+...
T Consensus       278 sf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~Pna-lW~Wdlq~l~l~a  356 (447)
T KOG4497|consen  278 SFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNA-LWLWDLQNLKLHA  356 (447)
T ss_pred             ccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCce-EEEEechhhhhhh
Confidence                                     0001111      112245678999999999986643  45 8999998777655


Q ss_pred             EEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977          254 EVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (415)
Q Consensus       254 ~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  294 (415)
                      .+.   ...+|....|+|....|+.+.....+++|...-..
T Consensus       357 vLi---Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~  394 (447)
T KOG4497|consen  357 VLI---QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPR  394 (447)
T ss_pred             hhh---hccceeEEEeCCCCceEEEEcCCceEEEEcCCCce
Confidence            554   34579999999999999988888889999877644

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.50  E-value=1.4e-12  Score=127.17  Aligned_cols=242  Identities=17%  Similarity=0.217  Sum_probs=163.7

Q ss_pred             CCCceEEEEEeC--CCCEEEEEe-CCcEEEEEccCCc----eeEEE--ec----cCCCeeEEEEeeeC-CeEEEEecCCC
Q 014977           43 DEIELISVSWNQ--DYGCFAAGT-SCGFRIYNCEPFK----ETFRR--DL----KSGGFRIVEMLFRC-NILALVGAGDN  108 (415)
Q Consensus        43 h~~~V~~l~~sp--~g~~la~g~-d~~v~iw~~~~~~----~~~~~--~~----~~~~~~~~~~~~~~-~~~~l~s~~~d  108 (415)
                      ....|+.+.+-.  |..++.+|+ ||.|+||+--...    ++...  .+    ......-.-+.|.. .|.++++|+. 
T Consensus      1108 ~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~- 1186 (1387)
T KOG1517|consen 1108 PDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDV- 1186 (1387)
T ss_pred             CCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCe-
Confidence            345688888754  456788888 9999999753211    11110  01    11111113344554 5666666654 


Q ss_pred             CCCCCCeEEEEECCCCCEEEEEE--ccCceeEEEEcC-CeEEEE---eCCeEEEEEcCCc---eeeeEEeccCCCcceEE
Q 014977          109 SQYPPTKVIIWDDHQSRCIGEFA--FRSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDL---KLLHQIETLANLRGLCC  179 (415)
Q Consensus       109 ~~~~~~~i~vwd~~~~~~~~~~~--~~~~i~~l~~~~-~~~~~~---~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~  179 (415)
                           ..|+|||....+.+..+.  ....|+++.-+- .|..++   .||.|++||.+..   ..+.....|.....++.
T Consensus      1187 -----r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~ 1261 (1387)
T KOG1517|consen 1187 -----RSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVH 1261 (1387)
T ss_pred             -----eEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCccccee
Confidence                 899999999888888776  355667666543 345555   7999999998643   34556677776544565


Q ss_pred             EecCCCceE-EEEeCCccCeEEEEEcCCcc---eEEEecCc--c-ceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEE
Q 014977          180 LSHHSSTSV-LACPGLQRGQVRIEHFGLNM---IKLINAHD--S-HIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRL  252 (415)
Q Consensus       180 ~~~~~~~~~-l~~~g~~dg~v~i~~~~~~~---~~~~~~~~--~-~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~  252 (415)
                      ++..++|.- |+ +|+.+|.|++|+.+...   ...+..|.  + ..+++..+++...+|+|+. +. |+||++ .|+.+
T Consensus      1262 ~slq~~G~~elv-Sgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~-ikIy~~-~G~~l 1337 (1387)
T KOG1517|consen 1262 LSLQRQGLGELV-SGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QL-IKIYSL-SGEQL 1337 (1387)
T ss_pred             EEeecCCCccee-eeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ce-EEEEec-Chhhh
Confidence            555544433 43 58899999999988732   22233343  3 5899999999999999998 77 999998 56655


Q ss_pred             EEEecC-----CCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977          253 QEVRRG-----VDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (415)
Q Consensus       253 ~~~~~~-----~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  294 (415)
                      ..++..     ...+.+.+++|+|-.-+||+|+.|.+|.||...++.
T Consensus      1338 ~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1338 NIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             cccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence            554421     123467999999999999999999999999877654

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=3.4e-11  Score=114.91  Aligned_cols=175  Identities=12%  Similarity=0.047  Sum_probs=120.0

Q ss_pred             CeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE------eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCce
Q 014977          114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV------LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS  187 (415)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (415)
                      ..|.+||...........+...+...+|+|||+.++      .+..|++|++.+++...... ...  ......++|++.
T Consensus       179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~-~~~--~~~~~~~SPDG~  255 (429)
T PRK03629        179 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS-FPR--HNGAPAFSPDGS  255 (429)
T ss_pred             eeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC-CCC--CcCCeEECCCCC
Confidence            589999977655544444677899999999998887      13579999998875433221 111  122456677777


Q ss_pred             EEEEeCCccC--eEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCC-Cc-EEEEEECCCCcEEEEEecCCCccc
Q 014977          188 VLACPGLQRG--QVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTR-GT-LIRIFNTVDGTRLQEVRRGVDRAE  263 (415)
Q Consensus       188 ~l~~~g~~dg--~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d-g~-~I~vwd~~~~~~~~~~~~~~~~~~  263 (415)
                      .|+++...+|  .|++|+........+..+...+....|+|||+.|+..+.+ +. .|+++|+.+++.. .+..  ....
T Consensus       256 ~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~--~~~~  332 (429)
T PRK03629        256 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITW--EGSQ  332 (429)
T ss_pred             EEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eeec--CCCC
Confidence            7877555555  4667777776677776666678899999999988777654 33 1555577666543 4433  2334


Q ss_pred             EEEEEeCCCCCEEEEEeCC---CeEEEEEceecc
Q 014977          264 IYSIALSPNVQWLAVASDK---GTVHIFSLRVRV  294 (415)
Q Consensus       264 v~~l~~spdg~~l~s~s~d---g~i~vwd~~~~~  294 (415)
                      .....|+|||++|+..+.+   ..|.+||+++++
T Consensus       333 ~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~  366 (429)
T PRK03629        333 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG  366 (429)
T ss_pred             ccCEEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence            5678899999999876654   358888987765

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.49  E-value=6.4e-11  Score=109.89  Aligned_cols=191  Identities=14%  Similarity=0.091  Sum_probs=121.4

Q ss_pred             CEEEEEe--CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccC
Q 014977           57 GCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRS  134 (415)
Q Consensus        57 ~~la~g~--d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~  134 (415)
                      .++++..  ++.|.|.|.++.+.+.+..  .+......+.+++++.++...+.|     +.|.++|+.+++.+.++....
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~--~~~~~h~~~~~s~Dgr~~yv~~rd-----g~vsviD~~~~~~v~~i~~G~   78 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIP--TGGAPHAGLKFSPDGRYLYVANRD-----GTVSVIDLATGKVVATIKVGG   78 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE---STTEEEEEE-TT-SSEEEEEETT-----SEEEEEETTSSSEEEEEE-SS
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEc--CCCCceeEEEecCCCCEEEEEcCC-----CeEEEEECCcccEEEEEecCC
Confidence            4555444  8999999999866655443  333335567789988766666666     999999999999999999888


Q ss_pred             ceeEEEEcCCeEEEE----eCCeEEEEEcCCceeeeEEeccCCC-----cceEEEecCCCceEEEEeCCccCeEEEEEcC
Q 014977          135 DVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANL-----RGLCCLSHHSSTSVLACPGLQRGQVRIEHFG  205 (415)
Q Consensus       135 ~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~  205 (415)
                      ...++++++||++++    ..+.+.++|.++.+.++.+.....+     ..+.++..++....++++--+.+.|.+-+..
T Consensus        79 ~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~  158 (369)
T PF02239_consen   79 NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYS  158 (369)
T ss_dssp             EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETT
T ss_pred             CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEec
Confidence            889999999999887    6899999999999999888654221     2344554444444344434455777764433


Q ss_pred             C-cce-EEEecCccceEEEEeCCCCCEEEEEe-CCCcEEEEEECCCCcEEEEE
Q 014977          206 L-NMI-KLINAHDSHIACFTLTLDGLLLATAS-TRGTLIRIFNTVDGTRLQEV  255 (415)
Q Consensus       206 ~-~~~-~~~~~~~~~i~~l~~sp~g~~l~s~s-~dg~~I~vwd~~~~~~~~~~  255 (415)
                      . ..+ ..............|+|++++++.+. .... |-++|.++++.+..+
T Consensus       159 d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~-i~viD~~~~k~v~~i  210 (369)
T PF02239_consen  159 DPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNK-IAVIDTKTGKLVALI  210 (369)
T ss_dssp             TSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTE-EEEEETTTTEEEEEE
T ss_pred             cccccceeeecccccccccccCcccceeeecccccce-eEEEeeccceEEEEe
Confidence            2 222 22223345667889999999876654 4445 888888776655443

...

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.49  E-value=1.8e-12  Score=120.05  Aligned_cols=177  Identities=12%  Similarity=0.110  Sum_probs=128.1

Q ss_pred             CeEEEEECCCC-C----EEEEEEccCceeEEEEcC-CeEEEE---eCCeEEEEEcCCc-------eeeeEEeccCCCcce
Q 014977          114 TKVIIWDDHQS-R----CIGEFAFRSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDL-------KLLHQIETLANLRGL  177 (415)
Q Consensus       114 ~~i~vwd~~~~-~----~~~~~~~~~~i~~l~~~~-~~~~~~---~d~~i~iwd~~~~-------~~~~~~~~~~~~~~~  177 (415)
                      |.|-||++..- +    .+-.+.....|+++.|+| |...++   .||.|++|.+..+       .....+..|...+..
T Consensus       603 G~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~s  682 (1012)
T KOG1445|consen  603 GVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITS  682 (1012)
T ss_pred             ceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEE
Confidence            89999998653 2    233344678899999998 333333   8999999998543       344566777775555


Q ss_pred             EEEecCCCceEEEEeCCccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcE-EEEE
Q 014977          178 CCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR-LQEV  255 (415)
Q Consensus       178 ~~~~~~~~~~~l~~~g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~-~~~~  255 (415)
                      +.|++-... .|+ +++.|-+|++|+... +....+.+|.+.|..++|||+|+.+|+.+.||+ |+||+-++++. +++-
T Consensus       683 lRfHPLAad-vLa-~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~-~rVy~Prs~e~pv~Eg  759 (1012)
T KOG1445|consen  683 LRFHPLAAD-VLA-VASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGT-LRVYEPRSREQPVYEG  759 (1012)
T ss_pred             EEecchhhh-Hhh-hhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCce-EEEeCCCCCCCccccC
Confidence            555554332 344 467899999998765 455678999999999999999999999999999 99999887753 3333


Q ss_pred             ecCCCcccEEEEEeCCCCCEEEEEeCCC----eEEEEEceecc
Q 014977          256 RRGVDRAEIYSIALSPNVQWLAVASDKG----TVHIFSLRVRV  294 (415)
Q Consensus       256 ~~~~~~~~v~~l~~spdg~~l~s~s~dg----~i~vwd~~~~~  294 (415)
                      ++. -...-..+.|.-||+++++.+.|.    .|.+||.++-.
T Consensus       760 ~gp-vgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~  801 (1012)
T KOG1445|consen  760 KGP-VGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLD  801 (1012)
T ss_pred             CCC-ccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhcc
Confidence            221 223445678888999999887765    57777766543

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.49  E-value=1.1e-10  Score=107.17  Aligned_cols=237  Identities=12%  Similarity=0.132  Sum_probs=157.2

Q ss_pred             eEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCC-----CCeEEEEEC
Q 014977           47 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYP-----PTKVIIWDD  121 (415)
Q Consensus        47 V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~-----~~~i~vwd~  121 (415)
                      .+..+++++|+++|.+.+..++|++......++...    .....++.|+|-+.++.+-..-..+.     .-.+.+|++
T Consensus        37 ~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~----~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~v  112 (566)
T KOG2315|consen   37 CNVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVE----LKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNV  112 (566)
T ss_pred             ceeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEec----cceeeeeeecccccccccccccccccCCCCCCCceeeeee
Confidence            788899999999999999999999998876444432    22788899999988887643321111     246789999


Q ss_pred             CCCCEEEEEE--ccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEe----C
Q 014977          122 HQSRCIGEFA--FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP----G  193 (415)
Q Consensus       122 ~~~~~~~~~~--~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----g  193 (415)
                      +++.....+.  .... ....|+.|..+.+  ..+.+++|++.+.+.+.. ..+...+....+++.|....+|+-    +
T Consensus       113 et~~~~s~~q~k~Q~~-W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vAvyvPe~k  190 (566)
T KOG2315|consen  113 ETGVQRSQIQKKMQNG-WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFVAVYVPEKK  190 (566)
T ss_pred             ccceehhheehhhhcC-cccccccchhhhhhhhcceEEEEecCCccceee-eeeccceeeEEecCCCCCceEEEEccCCC
Confidence            9976666665  2222 6889999998888  788999999865332211 112232344444444333333220    1


Q ss_pred             CccCeEEE--------------------------EEcCC-------------------------------cceEEEecCc
Q 014977          194 LQRGQVRI--------------------------EHFGL-------------------------------NMIKLINAHD  216 (415)
Q Consensus       194 ~~dg~v~i--------------------------~~~~~-------------------------------~~~~~~~~~~  216 (415)
                      +.-..|+|                          |+..+                               .....--...
T Consensus       191 GaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~  270 (566)
T KOG2315|consen  191 GAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKE  270 (566)
T ss_pred             CCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCC
Confidence            12222333                          22111                               1111111236


Q ss_pred             cceEEEEeCCCCCEEEE--EeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCC---CeEEEEEce
Q 014977          217 SHIACFTLTLDGLLLAT--ASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK---GTVHIFSLR  291 (415)
Q Consensus       217 ~~i~~l~~sp~g~~l~s--~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d---g~i~vwd~~  291 (415)
                      ++|.++.|+|+|+.+++  |-.-.. +.|||+ .+.++..+..    ++=+.+-|+|.|++|+.++-+   |.|-|||+.
T Consensus       271 GPVhdv~W~~s~~EF~VvyGfMPAk-vtifnl-r~~~v~df~e----gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~  344 (566)
T KOG2315|consen  271 GPVHDVTWSPSGREFAVVYGFMPAK-VTIFNL-RGKPVFDFPE----GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVP  344 (566)
T ss_pred             CCceEEEECCCCCEEEEEEecccce-EEEEcC-CCCEeEeCCC----CCccceEECCCCCEEEEeecCCCCCceEEEecc
Confidence            89999999999986654  445567 999997 6788777754    356789999999999988764   789999999


Q ss_pred             eccc
Q 014977          292 VRVV  295 (415)
Q Consensus       292 ~~~~  295 (415)
                      +.++
T Consensus       345 n~K~  348 (566)
T KOG2315|consen  345 NRKL  348 (566)
T ss_pred             chhh
Confidence            9664

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.48  E-value=7.2e-12  Score=109.91  Aligned_cols=245  Identities=15%  Similarity=0.132  Sum_probs=170.6

Q ss_pred             CCCCCCceEEEEEeCCCC--EEEEEe-CCcEEEEEccCCceeEEE----eccCCCeeEEEEeeeCCeEEEEecCCCCCCC
Q 014977           40 SDVDEIELISVSWNQDYG--CFAAGT-SCGFRIYNCEPFKETFRR----DLKSGGFRIVEMLFRCNILALVGAGDNSQYP  112 (415)
Q Consensus        40 ~~~h~~~V~~l~~sp~g~--~la~g~-d~~v~iw~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~  112 (415)
                      ..+....|.+++|.-+++  .|...+ +..+..+.++..+..-..    ........+..+..... .++.+.+ +    
T Consensus        51 ~~~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg-~Litc~~-s----  124 (412)
T KOG3881|consen   51 GVDELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADG-TLITCVS-S----  124 (412)
T ss_pred             ccchhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCC-EEEEEec-C----
Confidence            445567788888886654  444443 666777666543332221    12234444555444433 3333322 2    


Q ss_pred             CCeEEEEECCCC----CEEEEEEccCceeEEEEcCCeEEEE----eC--CeEEEEEcCCceeeeEEeccC-------CCc
Q 014977          113 PTKVIIWDDHQS----RCIGEFAFRSDVRSVKLSRDRIVVV----LE--HKIYVYSFVDLKLLHQIETLA-------NLR  175 (415)
Q Consensus       113 ~~~i~vwd~~~~----~~~~~~~~~~~i~~l~~~~~~~~~~----~d--~~i~iwd~~~~~~~~~~~~~~-------~~~  175 (415)
                       |.+.+|..+.+    ..+..+.....+..|.-++....++    ..  ..+.+||+++.+.+..-+.-.       -|+
T Consensus       125 -G~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPv  203 (412)
T KOG3881|consen  125 -GNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPV  203 (412)
T ss_pred             -CcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeee
Confidence             99999997743    3344455556777777777666665    23  568999998875554432211       234


Q ss_pred             ceEEEecCCC--ceEEEEeCCccCeEEEEEcCC--cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcE
Q 014977          176 GLCCLSHHSS--TSVLACPGLQRGQVRIEHFGL--NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR  251 (415)
Q Consensus       176 ~~~~~~~~~~--~~~l~~~g~~dg~v~i~~~~~--~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~  251 (415)
                      ++..+.+-+.  ...+|+ +..-+.+++|+.+.  +++..+.--..+++++...|+|+++++|..-+. +..||++.++.
T Consensus       204 W~tdi~Fl~g~~~~~fat-~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~-l~~FD~r~~kl  281 (412)
T KOG3881|consen  204 WITDIRFLEGSPNYKFAT-ITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQ-LAKFDLRGGKL  281 (412)
T ss_pred             eeccceecCCCCCceEEE-EecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccch-hheecccCcee
Confidence            5555555443  455554 66789999988764  567777778899999999999999999999999 99999999998


Q ss_pred             EEE-EecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceeccc
Q 014977          252 LQE-VRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV  295 (415)
Q Consensus       252 ~~~-~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~  295 (415)
                      +.. +.+  ..+.|.+|..+|.+++|++++-|..|+|+|+++.+-
T Consensus       282 ~g~~~kg--~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkl  324 (412)
T KOG3881|consen  282 LGCGLKG--ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKL  324 (412)
T ss_pred             eccccCC--ccCCcceEEEcCCCceEEeeccceeEEEeecccchh
Confidence            877 555  678999999999999999999999999999999553

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.48  E-value=2.3e-11  Score=116.62  Aligned_cols=217  Identities=13%  Similarity=0.030  Sum_probs=143.0

Q ss_pred             cEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCe
Q 014977           66 GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDR  145 (415)
Q Consensus        66 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~  145 (415)
                      .|.++|.+.... ..  +..+...+....|+|++..++..+...  .+..|.+||+.+++......+.+.+....|+|||
T Consensus       183 ~l~~~d~dg~~~-~~--lt~~~~~v~~p~wSpDG~~lay~s~~~--g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG  257 (435)
T PRK05137        183 RLAIMDQDGANV-RY--LTDGSSLVLTPRFSPNRQEITYMSYAN--GRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDG  257 (435)
T ss_pred             EEEEECCCCCCc-EE--EecCCCCeEeeEECCCCCEEEEEEecC--CCCEEEEEECCCCcEEEeecCCCcccCcEECCCC
Confidence            466666654322 11  225566788999999987766543210  1278999999888765444467778889999999


Q ss_pred             EEEE----eC--CeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccC--eEEEEEcCCcceEEEecCcc
Q 014977          146 IVVV----LE--HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRG--QVRIEHFGLNMIKLINAHDS  217 (415)
Q Consensus       146 ~~~~----~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg--~v~i~~~~~~~~~~~~~~~~  217 (415)
                      ..++    .+  ..|++||+.+++.. .+..+..  ......++|++..|+++...+|  .|++++..+...+.+..+..
T Consensus       258 ~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~--~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~  334 (435)
T PRK05137        258 RKVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPA--IDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGG  334 (435)
T ss_pred             CEEEEEEecCCCceEEEEECCCCceE-EccCCCC--ccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCC
Confidence            8765    23  45888898876553 3433332  2234556667777777554444  56667777766677766666


Q ss_pred             ceEEEEeCCCCCEEEEEeCCC--cEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCC------CeEEEEE
Q 014977          218 HIACFTLTLDGLLLATASTRG--TLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK------GTVHIFS  289 (415)
Q Consensus       218 ~i~~l~~sp~g~~l~s~s~dg--~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d------g~i~vwd  289 (415)
                      .+....|+|+|++|+..+.++  ..|.+||+..+.. ..+..   ...+..+.|+|||++|+..+.+      ..|++++
T Consensus       335 ~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~---~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~d  410 (435)
T PRK05137        335 RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS---GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVD  410 (435)
T ss_pred             cccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC---CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEE
Confidence            677789999999988766432  2388899855543 34433   2246778999999998876543      2577777


Q ss_pred             ceecc
Q 014977          290 LRVRV  294 (415)
Q Consensus       290 ~~~~~  294 (415)
                      +..+.
T Consensus       411 l~g~~  415 (435)
T PRK05137        411 LTGRN  415 (435)
T ss_pred             CCCCc
Confidence            76544

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.48  E-value=1.5e-11  Score=117.42  Aligned_cols=196  Identities=15%  Similarity=0.082  Sum_probs=126.2

Q ss_pred             CCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE----eCCe--EEEEE
Q 014977           85 SGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV----LEHK--IYVYS  158 (415)
Q Consensus        85 ~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~----~d~~--i~iwd  158 (415)
                      .+...+....|+|++..++..+.+.  ....|.+||+.+++........+.+....|+||+..++    .++.  |+++|
T Consensus       193 ~~~~~v~~p~wSPDG~~la~~s~~~--~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d  270 (427)
T PRK02889        193 SSPEPIISPAWSPDGTKLAYVSFES--KKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVN  270 (427)
T ss_pred             cCCCCcccceEcCCCCEEEEEEccC--CCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEE
Confidence            4555678899999997776554320  12569999999887655444566677899999998765    3554  55555


Q ss_pred             cCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEc--CCcceEEEecCccceEEEEeCCCCCEEEEEeC
Q 014977          159 FVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHF--GLNMIKLINAHDSHIACFTLTLDGLLLATAST  236 (415)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~--~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~  236 (415)
                      +..++ ...+..+..  ......++++++.|++++..++...||..  .+.....+..+.......+|+|||++|+..+.
T Consensus       271 ~~~~~-~~~lt~~~~--~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~  347 (427)
T PRK02889        271 ADGSG-LRRLTQSSG--IDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISR  347 (427)
T ss_pred             CCCCC-cEECCCCCC--CCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEc
Confidence            55444 334433322  22334567777778776555566666543  33444444433344456889999999987765


Q ss_pred             CC---cEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCC---eEEEEEc
Q 014977          237 RG---TLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKG---TVHIFSL  290 (415)
Q Consensus       237 dg---~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg---~i~vwd~  290 (415)
                      ++   . |.+||+.+++.. .+...   .......|+|||++|+.++.++   .+++.++
T Consensus       348 ~~g~~~-I~v~d~~~g~~~-~lt~~---~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~  402 (427)
T PRK02889        348 VGGAFK-LYVQDLATGQVT-ALTDT---TRDESPSFAPNGRYILYATQQGGRSVLAAVSS  402 (427)
T ss_pred             cCCcEE-EEEEECCCCCeE-EccCC---CCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence            54   5 999999888754 33321   2346789999999998877654   3444444

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.46  E-value=6.8e-12  Score=109.97  Aligned_cols=211  Identities=13%  Similarity=0.109  Sum_probs=153.3

Q ss_pred             EEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCC------CCEEEEEE--ccCceeEEEEcCCeEEEE-
Q 014977           79 FRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ------SRCIGEFA--FRSDVRSVKLSRDRIVVV-  149 (415)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~------~~~~~~~~--~~~~i~~l~~~~~~~~~~-  149 (415)
                      +++.+.+|...|.++.|+.++.+|++|++|     ..+++|+++.      .+++....  |...|.+++|+.....+. 
T Consensus        48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD-----~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~S  122 (609)
T KOG4227|consen   48 CQKDVREHTGCINALQFSHNDRFLASGGDD-----MHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYS  122 (609)
T ss_pred             hhhhhhhhccccceeeeccCCeEEeecCCc-----ceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEec
Confidence            334455788888999999999999999998     9999999643      46666665  678999999998888887 


Q ss_pred             --eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcc----eEEEecCccceEEEE
Q 014977          150 --LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNM----IKLINAHDSHIACFT  223 (415)
Q Consensus       150 --~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~----~~~~~~~~~~i~~l~  223 (415)
                        .+++|...|+++.+.+..+....+...+..+..+|-...+++ .+.++.|.+|+.+..+    ...+........++.
T Consensus       123 G~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~-~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~  201 (609)
T KOG4227|consen  123 GERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIV-VTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAE  201 (609)
T ss_pred             CCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEE-EecCceEEEEeccCCCCCCceeeecCCCccceeee
Confidence              689999999999988888766555445666666666566665 4589999998876543    222233456678899


Q ss_pred             eCCCC-CEEEEEeCCCcEEEEEECCCCcE-EEEE---ecCC-CcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977          224 LTLDG-LLLATASTRGTLIRIFNTVDGTR-LQEV---RRGV-DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       224 ~sp~g-~~l~s~s~dg~~I~vwd~~~~~~-~~~~---~~~~-~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                      |+|.. .+|++.+..+. +-+||.+.... +...   .+.. ....-.++.|+|.|..|.+.-....-.+||+-+..+.
T Consensus       202 F~P~~P~Li~~~~~~~G-~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~  279 (609)
T KOG4227|consen  202 FHPETPALILVNSETGG-PNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCF  279 (609)
T ss_pred             ecCCCceeEEeccccCC-CCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccce
Confidence            99954 57888999999 99999875432 1111   1100 1123357789999998887766666677787776543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=4.6e-11  Score=114.56  Aligned_cols=173  Identities=10%  Similarity=0.051  Sum_probs=120.4

Q ss_pred             CeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE------eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCce
Q 014977          114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV------LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS  187 (415)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (415)
                      ..|.++|...........+...+....|+|||+.++      .+..|++||+.+++.. .+.....  ......++|++.
T Consensus       182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g--~~~~~~~SPDG~  258 (435)
T PRK05137        182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPG--MTFAPRFSPDGR  258 (435)
T ss_pred             eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCC--cccCcEECCCCC
Confidence            589999975544443334778999999999998877      2468999999887653 3333332  233455667777


Q ss_pred             EEEEeCCccCe--EEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeC-CC--cEEEEEECCCCcEEEEEecCCCcc
Q 014977          188 VLACPGLQRGQ--VRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATAST-RG--TLIRIFNTVDGTRLQEVRRGVDRA  262 (415)
Q Consensus       188 ~l~~~g~~dg~--v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~-dg--~~I~vwd~~~~~~~~~~~~~~~~~  262 (415)
                      .|+++.+.++.  |++++........+..+........|+|||+.|+..+. +|  . |+++|+..++.. .+..  ...
T Consensus       259 ~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~-Iy~~d~~g~~~~-~lt~--~~~  334 (435)
T PRK05137        259 KVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQ-LYVMNADGSNPR-RISF--GGG  334 (435)
T ss_pred             EEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCe-EEEEECCCCCeE-Eeec--CCC
Confidence            77665555655  55567777777777777777778999999998887664 22  5 888898766543 4433  234


Q ss_pred             cEEEEEeCCCCCEEEEEeCC---CeEEEEEceec
Q 014977          263 EIYSIALSPNVQWLAVASDK---GTVHIFSLRVR  293 (415)
Q Consensus       263 ~v~~l~~spdg~~l~s~s~d---g~i~vwd~~~~  293 (415)
                      .+....|+|||++|+..+.+   ..|.+||+..+
T Consensus       335 ~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~  368 (435)
T PRK05137        335 RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS  368 (435)
T ss_pred             cccCeEECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence            56678899999999877653   35788887544

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.46  E-value=8.6e-13  Score=120.24  Aligned_cols=211  Identities=13%  Similarity=0.130  Sum_probs=140.9

Q ss_pred             CCCCccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC--CeEEEEecCCCCC
Q 014977           34 HPQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC--NILALVGAGDNSQ  110 (415)
Q Consensus        34 ~~~~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~d~~  110 (415)
                      ..+.....||++.|+++.|+.+|.+|++|+ |-.+.|||.-..+.+.... .+|...|.++.|-|  +..+++++..|  
T Consensus        40 L~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~-TgHtaNIFsvKFvP~tnnriv~sgAgD--  116 (758)
T KOG1310|consen   40 LDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIS-TGHTANIFSVKFVPYTNNRIVLSGAGD--  116 (758)
T ss_pred             cchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeee-cccccceeEEeeeccCCCeEEEeccCc--
Confidence            445567899999999999999999999999 8899999987655544443 38888899988887  56788888877  


Q ss_pred             CCCCeEEEEECCCC----------CEEEEEE-ccCceeEEEEcCCeEEEE----eCCeEEEEEcCCceee-------eEE
Q 014977          111 YPPTKVIIWDDHQS----------RCIGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLL-------HQI  168 (415)
Q Consensus       111 ~~~~~i~vwd~~~~----------~~~~~~~-~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~-------~~~  168 (415)
                         ..|+++|+...          .....+. |...|..|+..|++..++    .||+|+-||++....-       ..+
T Consensus       117 ---k~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l  193 (758)
T KOG1310|consen  117 ---KLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSIL  193 (758)
T ss_pred             ---ceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHH
Confidence               99999998742          1122223 778888999988874443    7999999999652211       111


Q ss_pred             -eccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC-------------------cceEEEe-cCc-----------
Q 014977          169 -ETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-------------------NMIKLIN-AHD-----------  216 (415)
Q Consensus       169 -~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~-------------------~~~~~~~-~~~-----------  216 (415)
                       .-+...+..-++..+|...++++.|+.+-..++++.+.                   .++..+. +|.           
T Consensus       194 ~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~  273 (758)
T KOG1310|consen  194 VNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYI  273 (758)
T ss_pred             HHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccce
Confidence             11112223334444444444444577888888877321                   1122221 221           


Q ss_pred             cceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcE
Q 014977          217 SHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR  251 (415)
Q Consensus       217 ~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~  251 (415)
                      ..++-++|+|+|..|+..-.... |+++|+..++.
T Consensus       274 ~~~t~vtfnpNGtElLvs~~gEh-VYlfdvn~~~~  307 (758)
T KOG1310|consen  274 TCCTYVTFNPNGTELLVSWGGEH-VYLFDVNEDKS  307 (758)
T ss_pred             eeeEEEEECCCCcEEEEeeCCeE-EEEEeecCCCC
Confidence            12566889999986655443334 99999976553

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.45  E-value=5.4e-11  Score=110.38  Aligned_cols=237  Identities=11%  Similarity=0.070  Sum_probs=144.4

Q ss_pred             eEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCC
Q 014977           47 LISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR  125 (415)
Q Consensus        47 V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~  125 (415)
                      -..+.|+|||+++.+.+ |+.|.++|+.+.+.+.+..   -......+.+++++.+++.+...    ++.+.++|.++.+
T Consensus        39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~---~G~~~~~i~~s~DG~~~~v~n~~----~~~v~v~D~~tle  111 (369)
T PF02239_consen   39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIK---VGGNPRGIAVSPDGKYVYVANYE----PGTVSVIDAETLE  111 (369)
T ss_dssp             EEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE----SSEEEEEEE--TTTEEEEEEEE----TTEEEEEETTT--
T ss_pred             eeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEe---cCCCcceEEEcCCCCEEEEEecC----CCceeEecccccc
Confidence            34577999999999888 9999999999877555443   34456778899998777665432    3999999999999


Q ss_pred             EEEEEEc--------cCceeEEEEcCCeE-EEE---eCCeEEEEEcCCceeee--EEeccCCCcceEEEecCCCceEEEE
Q 014977          126 CIGEFAF--------RSDVRSVKLSRDRI-VVV---LEHKIYVYSFVDLKLLH--QIETLANLRGLCCLSHHSSTSVLAC  191 (415)
Q Consensus       126 ~~~~~~~--------~~~i~~l~~~~~~~-~~~---~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~  191 (415)
                      .++.+..        ...+.++..++... +++   ..+.|.+.|..+.+.+.  .+....   ......+++++++++.
T Consensus       112 ~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~---~~~D~~~dpdgry~~v  188 (369)
T PF02239_consen  112 PVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGR---FPHDGGFDPDGRYFLV  188 (369)
T ss_dssp             EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--T---TEEEEEE-TTSSEEEE
T ss_pred             ceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccc---cccccccCcccceeee
Confidence            9998862        23567787777766 444   35888888877654332  232222   3445566666666554


Q ss_pred             eCCccCeEEEEEcCC--------------------------------------------------------cceEEEecC
Q 014977          192 PGLQRGQVRIEHFGL--------------------------------------------------------NMIKLINAH  215 (415)
Q Consensus       192 ~g~~dg~v~i~~~~~--------------------------------------------------------~~~~~~~~~  215 (415)
                      +...+..|-+.+...                                                        +.++.+...
T Consensus       189 a~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~  268 (369)
T PF02239_consen  189 AANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQ  268 (369)
T ss_dssp             EEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-S
T ss_pred             cccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECC
Confidence            333333443332221                                                        122333333


Q ss_pred             ccceEEEEeCCCCCEEEEE----eCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeC--CCeEEEEE
Q 014977          216 DSHIACFTLTLDGLLLATA----STRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASD--KGTVHIFS  289 (415)
Q Consensus       216 ~~~i~~l~~sp~g~~l~s~----s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~--dg~i~vwd  289 (415)
                      ..+ .-+..+|++++|.+.    ...+. |.++|.++.+.+..+... ....+..+.|++||+.+..+..  ++.|.|||
T Consensus       269 G~g-lFi~thP~s~~vwvd~~~~~~~~~-v~viD~~tl~~~~~i~~~-~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D  345 (369)
T PF02239_consen  269 GGG-LFIKTHPDSRYVWVDTFLNPDADT-VQVIDKKTLKVVKTITPG-PGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYD  345 (369)
T ss_dssp             SSS---EE--TT-SEEEEE-TT-SSHT--EEEEECCGTEEEE-HHHH-HT--EEEEEE-TTSSEEEEEEE--TTEEEEEE
T ss_pred             CCc-ceeecCCCCccEEeeccCCCCCce-EEEEECcCcceeEEEecc-CCCcEeccEECCCCCEEEEEEecCCCEEEEEE
Confidence            333 556779999999988    34466 999999999888777642 1124899999999997665444  33799999


Q ss_pred             ceecccC
Q 014977          290 LRVRVVG  296 (415)
Q Consensus       290 ~~~~~~~  296 (415)
                      ..+.+..
T Consensus       346 ~~Tl~~~  352 (369)
T PF02239_consen  346 AKTLKEK  352 (369)
T ss_dssp             TTTTEEE
T ss_pred             CCCcEEE
Confidence            9998765

...

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.45  E-value=7.5e-11  Score=112.64  Aligned_cols=175  Identities=15%  Similarity=0.103  Sum_probs=115.9

Q ss_pred             CeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE--e----CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCce
Q 014977          114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--L----EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS  187 (415)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (415)
                      ..|.++|...........+...+.+.+|+||++.++  .    ...|++||+.+++... +.....  ......++|++.
T Consensus       176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g--~~~~~~~SPDG~  252 (427)
T PRK02889        176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKG--SNSAPAWSPDGR  252 (427)
T ss_pred             cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCC--CccceEECCCCC
Confidence            578888864333333344778899999999998877  2    2469999998876543 222222  233556677777


Q ss_pred             EEEEeCCccCeEEEEE--cCCcceEEEecCccceEEEEeCCCCCEEEEEeC-CCcEEEEE--ECCCCcEEEEEecCCCcc
Q 014977          188 VLACPGLQRGQVRIEH--FGLNMIKLINAHDSHIACFTLTLDGLLLATAST-RGTLIRIF--NTVDGTRLQEVRRGVDRA  262 (415)
Q Consensus       188 ~l~~~g~~dg~v~i~~--~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~-dg~~I~vw--d~~~~~~~~~~~~~~~~~  262 (415)
                      .|+++.+.++...||.  ..+.....+..+........|+|||+.|+..+. ++. ..||  ++.+++.. .+..  ...
T Consensus       253 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~-~~Iy~~~~~~g~~~-~lt~--~g~  328 (427)
T PRK02889        253 TLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGA-PQIYRMPASGGAAQ-RVTF--TGS  328 (427)
T ss_pred             EEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCC-cEEEEEECCCCceE-EEec--CCC
Confidence            7776666777766654  445556666666666677899999998876664 344 5555  44455432 2222  122


Q ss_pred             cEEEEEeCCCCCEEEEEeCCC---eEEEEEceeccc
Q 014977          263 EIYSIALSPNVQWLAVASDKG---TVHIFSLRVRVV  295 (415)
Q Consensus       263 ~v~~l~~spdg~~l~s~s~dg---~i~vwd~~~~~~  295 (415)
                      .....+|+|||++|+..+.++   .|.+||+.+++.
T Consensus       329 ~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~  364 (427)
T PRK02889        329 YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV  364 (427)
T ss_pred             CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe
Confidence            344678999999999777654   699999987753

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.42  E-value=1.4e-09  Score=95.39  Aligned_cols=253  Identities=14%  Similarity=0.112  Sum_probs=170.8

Q ss_pred             ccCCCCCCceEEEEEeCCCCEEEEEe----CCcEEEEEccCC--ceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCC
Q 014977           38 AFSDVDEIELISVSWNQDYGCFAAGT----SCGFRIYNCEPF--KETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQY  111 (415)
Q Consensus        38 ~~~~~h~~~V~~l~~sp~g~~la~g~----d~~v~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~  111 (415)
                      .+...+.+..+-++|+|++++|.++.    +|.|..|.++..  ...+.-.........+.++.++++.+++++..    
T Consensus        33 ~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY----  108 (346)
T COG2706          33 LQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANY----  108 (346)
T ss_pred             hhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEc----
Confidence            34566778899999999999998876    577888888863  22222111122333367888899988877654    


Q ss_pred             CCCeEEEEECCC-CC---EEEEEEccCc----------eeEEEEcCCeEEEE----eCCeEEEEEcCCceeeeEEecc-C
Q 014977          112 PPTKVIIWDDHQ-SR---CIGEFAFRSD----------VRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETL-A  172 (415)
Q Consensus       112 ~~~~i~vwd~~~-~~---~~~~~~~~~~----------i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~~~~-~  172 (415)
                      ..+.|.++-+.. |.   .+..+.|.+.          +....+.|++++++    ....|.+|++.+++....-... .
T Consensus       109 ~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~  188 (346)
T COG2706         109 HSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVK  188 (346)
T ss_pred             cCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccC
Confidence            358999999865 43   3344556555          88899999998888    4678999999877654322111 1


Q ss_pred             CCcceEEEecCCCceEEEEeCCccCeEEEEEcCC--cceEEEec---------CccceEEEEeCCCCCEEEEEeCCCcEE
Q 014977          173 NLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL--NMIKLINA---------HDSHIACFTLTLDGLLLATASTRGTLI  241 (415)
Q Consensus       173 ~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~--~~~~~~~~---------~~~~i~~l~~sp~g~~l~s~s~dg~~I  241 (415)
                      .......+.++|++++..+.+-.+++|.+|..+.  ..+..++.         .......|.+++||++|.++..--..|
T Consensus       189 ~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI  268 (346)
T COG2706         189 PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSI  268 (346)
T ss_pred             CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeE
Confidence            1224455667777777776777899999977665  33333332         234567899999999999876543338


Q ss_pred             EEEECCCC-cEEEEEe-cCCCcccEEEEEeCCCCCEEEEEeCCC-eEEEEEceecc
Q 014977          242 RIFNTVDG-TRLQEVR-RGVDRAEIYSIALSPNVQWLAVASDKG-TVHIFSLRVRV  294 (415)
Q Consensus       242 ~vwd~~~~-~~~~~~~-~~~~~~~v~~l~~spdg~~l~s~s~dg-~i~vwd~~~~~  294 (415)
                      .+|.+... ..+..+. ...+....+.+.|+++|++|+++..++ +|.+|.++...
T Consensus       269 ~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T  324 (346)
T COG2706         269 AVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET  324 (346)
T ss_pred             EEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence            88876532 2232222 111333578999999999999888765 79999887554

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.42  E-value=6.5e-11  Score=102.38  Aligned_cols=244  Identities=11%  Similarity=0.200  Sum_probs=154.4

Q ss_pred             CCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCce---eEEEeccCCC------------eeEEEEeeeCC--e-EEEE
Q 014977           43 DEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE---TFRRDLKSGG------------FRIVEMLFRCN--I-LALV  103 (415)
Q Consensus        43 h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~---~~~~~~~~~~------------~~~~~~~~~~~--~-~~l~  103 (415)
                      ..+-|.++.|...|.+||+|. +|.|.+|.-+....   .+...++.|.            ..+..+.|.++  . .+++
T Consensus        24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl  103 (433)
T KOG1354|consen   24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL  103 (433)
T ss_pred             hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence            345689999999999999999 99999997653221   1112221221            23445555543  2 4455


Q ss_pred             ecCCCCCCCCCeEEEEECCCCC-----------------------------------EEEEEE--ccCceeEEEEcCCeE
Q 014977          104 GAGDNSQYPPTKVIIWDDHQSR-----------------------------------CIGEFA--FRSDVRSVKLSRDRI  146 (415)
Q Consensus       104 s~~~d~~~~~~~i~vwd~~~~~-----------------------------------~~~~~~--~~~~i~~l~~~~~~~  146 (415)
                      ++. |     .+|++|.+....                                   +.+.+.  |...|++|.++.|..
T Consensus       104 stN-d-----ktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E  177 (433)
T KOG1354|consen  104 STN-D-----KTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE  177 (433)
T ss_pred             ecC-C-----cceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc
Confidence            544 3     899999864321                                   111122  567789999999988


Q ss_pred             EEE--eCCeEEEEEcCCc-eeeeEEeccC-------CCcceEEEecCCCceEEEEeCCccCeEEEEEcCCc-----ceEE
Q 014977          147 VVV--LEHKIYVYSFVDL-KLLHQIETLA-------NLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN-----MIKL  211 (415)
Q Consensus       147 ~~~--~d~~i~iwd~~~~-~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~-----~~~~  211 (415)
                      .++  .|=.|.+|+++-- +........+       ..++...|+|...+ .+++ .+..|+|++-+++..     ..+.
T Consensus       178 t~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn-~f~Y-SSSKGtIrLcDmR~~aLCd~hsKl  255 (433)
T KOG1354|consen  178 TFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCN-VFVY-SSSKGTIRLCDMRQSALCDAHSKL  255 (433)
T ss_pred             eEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHcc-EEEE-ecCCCcEEEeechhhhhhcchhhh
Confidence            777  6778999998532 2222222111       11234455555433 4455 457999999665531     1111


Q ss_pred             Ee------------cCccceEEEEeCCCCCEEEEEeCCCcEEEEEECC-CCcEEEEEecCCC----------cc---cEE
Q 014977          212 IN------------AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTV-DGTRLQEVRRGVD----------RA---EIY  265 (415)
Q Consensus       212 ~~------------~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~-~~~~~~~~~~~~~----------~~---~v~  265 (415)
                      +.            .--..|..+.|+++|+|+++-+. -+ |++||+. ..+++.++..+.+          ..   .-.
T Consensus       256 fEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-lt-vk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKF  333 (433)
T KOG1354|consen  256 FEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LT-VKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKF  333 (433)
T ss_pred             hccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ce-eEEEeccccCCcceEEeehHhHHHHHHHHhhccchhhee
Confidence            11            12246788999999999997654 35 9999994 4566666654211          11   124


Q ss_pred             EEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977          266 SIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       266 ~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                      .++|+.++.++++|+..+.+++|++..|.+.
T Consensus       334 ec~~sg~~~~v~TGsy~n~frvf~~~~gsk~  364 (433)
T KOG1354|consen  334 ECSWSGNDSYVMTGSYNNVFRVFNLARGSKE  364 (433)
T ss_pred             EEEEcCCcceEecccccceEEEecCCCCcce
Confidence            6789999999999999999999998777653

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.41  E-value=3.8e-12  Score=116.15  Aligned_cols=208  Identities=14%  Similarity=0.169  Sum_probs=146.5

Q ss_pred             EeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE--ccCceeEEEEcC--CeEEEE---eCCe
Q 014977           81 RDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA--FRSDVRSVKLSR--DRIVVV---LEHK  153 (415)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~--~~~~i~~l~~~~--~~~~~~---~d~~  153 (415)
                      ..+.+|...|.++.|+.+|.+|++|++|     -.+.|||.-..+.+..+.  |...|.++.|-|  +.++++   .|..
T Consensus        44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD-----~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~  118 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNADGELLASGSDD-----TRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKL  118 (758)
T ss_pred             hhhccccceecceeecCCCCEEeecCCc-----ceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcce
Confidence            3456899999999999999999999998     999999999888888887  899999999987  344444   7999


Q ss_pred             EEEEEcCCc----------eeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCc--ce---------EEE
Q 014977          154 IYVYSFVDL----------KLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN--MI---------KLI  212 (415)
Q Consensus       154 i~iwd~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~--~~---------~~~  212 (415)
                      |++||+...          +....+..|..  .+-.++..|.+...+.++++||+++-++.+..  +.         ..+
T Consensus       119 i~lfdl~~~~~~~~d~~~~~~~~~~~cht~--rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny  196 (758)
T KOG1310|consen  119 IKLFDLDSSKEGGMDHGMEETTRCWSCHTD--RVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNY  196 (758)
T ss_pred             EEEEecccccccccccCccchhhhhhhhhh--hhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHh
Confidence            999999642          22233344555  33345555555445556789999999776641  11         111


Q ss_pred             ecCccceEEEEeCCCC-CEEEEEeCCCcEEEEEECCC--------Cc----------EEEEEecCCC----------ccc
Q 014977          213 NAHDSHIACFTLTLDG-LLLATASTRGTLIRIFNTVD--------GT----------RLQEVRRGVD----------RAE  263 (415)
Q Consensus       213 ~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~--------~~----------~~~~~~~~~~----------~~~  263 (415)
                      ....-...++.++|.. .+|++|+.|-. .++||.+.        +.          ++..+..+..          ...
T Consensus       197 ~~~lielk~ltisp~rp~~laVGgsdpf-arLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~  275 (758)
T KOG1310|consen  197 NPQLIELKCLTISPSRPYYLAVGGSDPF-ARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITC  275 (758)
T ss_pred             chhhheeeeeeecCCCCceEEecCCCch-hhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceee
Confidence            1222356789999955 58999999998 99999431        11          1222221100          012


Q ss_pred             EEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977          264 IYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       264 v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                      ++.+.|+|+|.-|++.-....|++||+..++..
T Consensus       276 ~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~  308 (758)
T KOG1310|consen  276 CTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSP  308 (758)
T ss_pred             eEEEEECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence            567899999987776666667999999988754

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.40  E-value=1.7e-09  Score=100.37  Aligned_cols=241  Identities=19%  Similarity=0.161  Sum_probs=154.2

Q ss_pred             CceEEEEEeCCCCEEEEEe-C----CcEEEEEccCC--ceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977           45 IELISVSWNQDYGCFAAGT-S----CGFRIYNCEPF--KETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (415)
Q Consensus        45 ~~V~~l~~sp~g~~la~g~-d----~~v~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~  117 (415)
                      .....++++|++++|.+.. .    +.|..|+++..  ...............+.+..++++.+++.+..    ..+.|.
T Consensus        37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany----~~g~v~  112 (345)
T PF10282_consen   37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANY----GGGSVS  112 (345)
T ss_dssp             SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEET----TTTEEE
T ss_pred             CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEc----cCCeEE
Confidence            3456788999999999887 3    57888988764  22222222224555667888888876666543    249999


Q ss_pred             EEECCC-CCEEEE---EEc-----------cCceeEEEEcCCeEEEE----eCCeEEEEEcCCce--ee--eEEeccCCC
Q 014977          118 IWDDHQ-SRCIGE---FAF-----------RSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLK--LL--HQIETLANL  174 (415)
Q Consensus       118 vwd~~~-~~~~~~---~~~-----------~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~--~~--~~~~~~~~~  174 (415)
                      ++++.. |.....   +.+           .....++.++|++++++    ....|++|++....  ..  ..+.. ...
T Consensus       113 v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~-~~G  191 (345)
T PF10282_consen  113 VFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKV-PPG  191 (345)
T ss_dssp             EEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEEC-STT
T ss_pred             EEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccc-ccC
Confidence            999887 433222   222           24577899999988776    36789999996644  22  22322 222


Q ss_pred             cceEEEecCCCceEEEEeCCccCeEEEEEcC--Cc---ceEEEecC------ccceEEEEeCCCCCEEEEEeCCCcEEEE
Q 014977          175 RGLCCLSHHSSTSVLACPGLQRGQVRIEHFG--LN---MIKLINAH------DSHIACFTLTLDGLLLATASTRGTLIRI  243 (415)
Q Consensus       175 ~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~--~~---~~~~~~~~------~~~i~~l~~sp~g~~l~s~s~dg~~I~v  243 (415)
                      .....+.++++++++.+....++.|.++...  ..   .+..+...      ......|+++|||++|+++......|.+
T Consensus       192 ~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~v  271 (345)
T PF10282_consen  192 SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISV  271 (345)
T ss_dssp             SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEE
T ss_pred             CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEE
Confidence            3456667777777777777788899985554  22   22222211      1257789999999998887754434999


Q ss_pred             EECC--CCcE--EEEEecCCCcccEEEEEeCCCCCEEEEEe-CCCeEEEEEcee
Q 014977          244 FNTV--DGTR--LQEVRRGVDRAEIYSIALSPNVQWLAVAS-DKGTVHIFSLRV  292 (415)
Q Consensus       244 wd~~--~~~~--~~~~~~~~~~~~v~~l~~spdg~~l~s~s-~dg~i~vwd~~~  292 (415)
                      |++.  +++.  +..+..  .....+.++++|+|++|+++. .++.|.+|+++.
T Consensus       272 f~~d~~~g~l~~~~~~~~--~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~  323 (345)
T PF10282_consen  272 FDLDPATGTLTLVQTVPT--GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP  323 (345)
T ss_dssp             EEECTTTTTEEEEEEEEE--SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred             EEEecCCCceEEEEEEeC--CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence            9983  3433  333333  233479999999999999877 556899999863

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.40  E-value=3.6e-12  Score=116.63  Aligned_cols=212  Identities=14%  Similarity=0.136  Sum_probs=148.8

Q ss_pred             ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCc--------eeEEEeccCCCeeEEEEeeeCCeEEEEecCCC
Q 014977           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFK--------ETFRRDLKSGGFRIVEMLFRCNILALVGAGDN  108 (415)
Q Consensus        38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d  108 (415)
                      -...+|.++|.|+++.+++..+.+|+ ||+|+.|++....        ..+...+.+|...+..++++.....|++++.|
T Consensus       338 ~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~D  417 (577)
T KOG0642|consen  338 LTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSD  417 (577)
T ss_pred             EEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCC
Confidence            34689999999999999999999999 9999999764221        12333455888889899999988889999988


Q ss_pred             CCCCCCeEEEEECCCCCEEEEEE---ccCceeEEEEcCCeEEEE-eCCeEEEEEc---CCceeeeEEeccC--CC---cc
Q 014977          109 SQYPPTKVIIWDDHQSRCIGEFA---FRSDVRSVKLSRDRIVVV-LEHKIYVYSF---VDLKLLHQIETLA--NL---RG  176 (415)
Q Consensus       109 ~~~~~~~i~vwd~~~~~~~~~~~---~~~~i~~l~~~~~~~~~~-~d~~i~iwd~---~~~~~~~~~~~~~--~~---~~  176 (415)
                           |+++.|+...... .++.   ..+.-..+.+......+. .+.....+++   .....+..+....  .+   ..
T Consensus       418 -----gTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~  491 (577)
T KOG0642|consen  418 -----GTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQ  491 (577)
T ss_pred             -----ceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCc
Confidence                 9999999766655 3333   233344555544332222 3444444443   3333333332111  11   12


Q ss_pred             eEEEecCCCceEEEEeCCccCeEEE-EEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEE
Q 014977          177 LCCLSHHSSTSVLACPGLQRGQVRI-EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEV  255 (415)
Q Consensus       177 ~~~~~~~~~~~~l~~~g~~dg~v~i-~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~  255 (415)
                      +..+..++...+.+ ++..|+.|++ +..++..+....+|...++++++.|+|-+|++++.|+. +++|.+....++...
T Consensus       492 in~vVs~~~~~~~~-~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~s-v~l~kld~k~~~~es  569 (577)
T KOG0642|consen  492 INKVVSHPTADITF-TAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGS-VRLWKLDVKTCVLES  569 (577)
T ss_pred             cceEEecCCCCeeE-ecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCce-eehhhccchheeecc
Confidence            33344445554444 4779999999 66778888899999999999999999999999999999 999998777666554


Q ss_pred             ec
Q 014977          256 RR  257 (415)
Q Consensus       256 ~~  257 (415)
                      ..
T Consensus       570 ~~  571 (577)
T KOG0642|consen  570 TA  571 (577)
T ss_pred             cc
Confidence            44

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.40  E-value=2.6e-10  Score=99.33  Aligned_cols=248  Identities=15%  Similarity=0.142  Sum_probs=161.5

Q ss_pred             CCCCCceEEEEEeCC-CCEEEEEeCCcEEEEEccCCceeEE----------Eec-cCCCeeEEEEeeeCCeEEEEecCCC
Q 014977           41 DVDEIELISVSWNQD-YGCFAAGTSCGFRIYNCEPFKETFR----------RDL-KSGGFRIVEMLFRCNILALVGAGDN  108 (415)
Q Consensus        41 ~~h~~~V~~l~~sp~-g~~la~g~d~~v~iw~~~~~~~~~~----------~~~-~~~~~~~~~~~~~~~~~~l~s~~~d  108 (415)
                      ......|++++|-|. ++-|++|..+.|.||..+.-....+          ..+ ..++..|..|.|.+|+..+++++.+
T Consensus       137 s~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~g  216 (445)
T KOG2139|consen  137 SVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFG  216 (445)
T ss_pred             chhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccC
Confidence            345667999999995 4688888899999998863111110          001 2456889999999999999987764


Q ss_pred             CCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCC
Q 014977          109 SQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHS  184 (415)
Q Consensus       109 ~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (415)
                          +..|.|||..++..+.... ..+.+.-+.|+||+.++.   -|+..++|+.....-.........  .+..-.|+|
T Consensus       217 ----sssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsg--rvqtacWsp  290 (445)
T KOG2139|consen  217 ----SSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSG--RVQTACWSP  290 (445)
T ss_pred             ----cceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCC--ceeeeeecC
Confidence                6899999999998877664 677888999999998877   699999996543222222222222  444555666


Q ss_pred             CceEEEEeCCccCeEEEEEcCCc-----------ce---EEE-----ecC----ccceEEEEeCCCCCEEEEEeCCCc--
Q 014977          185 STSVLACPGLQRGQVRIEHFGLN-----------MI---KLI-----NAH----DSHIACFTLTLDGLLLATASTRGT--  239 (415)
Q Consensus       185 ~~~~l~~~g~~dg~v~i~~~~~~-----------~~---~~~-----~~~----~~~i~~l~~sp~g~~l~s~s~dg~--  239 (415)
                      .|.+|.++.+..-.++--....+           .+   ..+     ...    .+++.+++|.|.|.+||+.-..+.  
T Consensus       291 cGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v  370 (445)
T KOG2139|consen  291 CGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFV  370 (445)
T ss_pred             CCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchh
Confidence            67676665544444433111110           00   000     111    467889999999999998765432  


Q ss_pred             -----EEEEEECCCCcEEEEEe-cCCCcccEEEEEeCC---CCCEEEEEeCCCeEEEEEceecc
Q 014977          240 -----LIRIFNTVDGTRLQEVR-RGVDRAEIYSIALSP---NVQWLAVASDKGTVHIFSLRVRV  294 (415)
Q Consensus       240 -----~I~vwd~~~~~~~~~~~-~~~~~~~v~~l~~sp---dg~~l~s~s~dg~i~vwd~~~~~  294 (415)
                           .|.+||.+..-.+.-.. +.........++|+|   ++.+|..+-..|.+.-|++.-..
T Consensus       371 ~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~f~~  434 (445)
T KOG2139|consen  371 LLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLTFQC  434 (445)
T ss_pred             hhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeEEEe
Confidence                 26678876544332221 111111245566765   67888888889999999886543

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.39  E-value=1.5e-10  Score=100.82  Aligned_cols=227  Identities=18%  Similarity=0.191  Sum_probs=144.2

Q ss_pred             CCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCe-EEEEecCCCCCCCCCeEEEEEC
Q 014977           44 EIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNI-LALVGAGDNSQYPPTKVIIWDD  121 (415)
Q Consensus        44 ~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~~~~~~i~vwd~  121 (415)
                      +-.+..++|++.--.+|++. |..|++|+-........+  ......+.+++|.|.. ..++.+..      +.|.+|..
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lk--s~sQrnvtclawRPlsaselavgCr------~gIciW~~  169 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLK--SVSQRNVTCLAWRPLSASELAVGCR------AGICIWSD  169 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCCCCCceec--chhhcceeEEEeccCCcceeeeeec------ceeEEEEc
Confidence            34578999999777788888 999999997752222221  1445678889998853 34454444      78999985


Q ss_pred             CC----CC--------EEEEEE--ccCceeEEEEcCCeEEEE----eCCeEEEEEcCCceeeeEEeccCCCcceEEEecC
Q 014977          122 HQ----SR--------CIGEFA--FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHH  183 (415)
Q Consensus       122 ~~----~~--------~~~~~~--~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  183 (415)
                      ..    +.        ..+.++  ....|++|+|++||..++    .+..|.|||..++..+........  .+.-+.++
T Consensus       170 s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glg--g~slLkwS  247 (445)
T KOG2139|consen  170 SRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLG--GFSLLKWS  247 (445)
T ss_pred             CcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCC--ceeeEEEc
Confidence            32    11        112233  236899999999999888    689999999988876654422222  34445556


Q ss_pred             CCceEEEEeCCccCeEEEEEcCCcc-eEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCC----Cc--------
Q 014977          184 SSTSVLACPGLQRGQVRIEHFGLNM-IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVD----GT--------  250 (415)
Q Consensus       184 ~~~~~l~~~g~~dg~v~i~~~~~~~-~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~----~~--------  250 (415)
                      |++.++.+ +.-|+..++|.....- .....-..+.|....|+|+|++|..+....  -++|.+..    +.        
T Consensus       248 Pdgd~lfa-At~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgs--p~lysl~f~~~~~~~~~~~~~k  324 (445)
T KOG2139|consen  248 PDGDVLFA-ATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGS--PRLYSLTFDGEDSVFLRPQSIK  324 (445)
T ss_pred             CCCCEEEE-ecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCC--ceEEEEeecCCCccccCcccce
Confidence            66666665 4579999999544321 122223345899999999999766544332  23443321    10        


Q ss_pred             ---EEEEEe-----cC--CCcccEEEEEeCCCCCEEEEEeCCC
Q 014977          251 ---RLQEVR-----RG--VDRAEIYSIALSPNVQWLAVASDKG  283 (415)
Q Consensus       251 ---~~~~~~-----~~--~~~~~v~~l~~spdg~~l~s~s~dg  283 (415)
                         .+..+.     .+  .-.+++.+++|.|.|.+||+.-..+
T Consensus       325 ~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~  367 (445)
T KOG2139|consen  325 RVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQ  367 (445)
T ss_pred             eeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCC
Confidence               011111     00  0134688999999999999876543

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.39  E-value=1.5e-11  Score=111.99  Aligned_cols=216  Identities=11%  Similarity=0.130  Sum_probs=134.1

Q ss_pred             CCCEEEEEe-CCcEEEEEccCCce--eEEEeccCCCeeEEEEeeeC--CeEEEEecCCCCCCCCCeEEEEECCCCCEEEE
Q 014977           55 DYGCFAAGT-SCGFRIYNCEPFKE--TFRRDLKSGGFRIVEMLFRC--NILALVGAGDNSQYPPTKVIIWDDHQSRCIGE  129 (415)
Q Consensus        55 ~g~~la~g~-d~~v~iw~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~  129 (415)
                      .+--|.+|- .|.+.+.+....+.  ++.....-....+.++.|-+  +..++++-..      |.+.+||.+       
T Consensus       184 ~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~s------Gnlyly~~~-------  250 (636)
T KOG2394|consen  184 KGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHAS------GNLYLYDKE-------  250 (636)
T ss_pred             CCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEec------CceEEeecc-------
Confidence            344455555 66777766543111  01111112235667777765  4566665433      899999851       


Q ss_pred             EEccCceeEEE--EcCCeEEEEeCCeEEEEEc-CCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC
Q 014977          130 FAFRSDVRSVK--LSRDRIVVVLEHKIYVYSF-VDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL  206 (415)
Q Consensus       130 ~~~~~~i~~l~--~~~~~~~~~~d~~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~  206 (415)
                      +  ....+...  ..+++..+.    |..|-- .+..++..+.....  .+..+++++++++||++ +.||.++|++...
T Consensus       251 ~--~~~~t~p~~~~~k~~~~f~----i~t~ksk~~rNPv~~w~~~~g--~in~f~FS~DG~~LA~V-SqDGfLRvF~fdt  321 (636)
T KOG2394|consen  251 I--VCGATAPSYQALKDGDQFA----ILTSKSKKTRNPVARWHIGEG--SINEFAFSPDGKYLATV-SQDGFLRIFDFDT  321 (636)
T ss_pred             c--cccCCCCcccccCCCCeeE----EeeeeccccCCccceeEeccc--cccceeEcCCCceEEEE-ecCceEEEeeccH
Confidence            1  11111111  112222221    111110 11123333322222  45566777789999985 5899999988776


Q ss_pred             cce-EEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCC--------------
Q 014977          207 NMI-KLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSP--------------  271 (415)
Q Consensus       207 ~~~-~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp--------------  271 (415)
                      ..+ -.++..-+...|++|||||+||++|++|.- |.||.+..++.+..-.+  |++.|..++|.|              
T Consensus       322 ~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDL-VtVwSf~erRVVARGqG--HkSWVs~VaFDpytt~~ee~~~~~~~  398 (636)
T KOG2394|consen  322 QELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDL-VTVWSFEERRVVARGQG--HKSWVSVVAFDPYTTSTEEWNNFSGM  398 (636)
T ss_pred             HHHHHHHHhhccceEEEEEcCCccEEEecCCcce-EEEEEeccceEEEeccc--cccceeeEeecccccccccccccccc
Confidence            443 344555678899999999999999999999 99999998888877666  999999999982              


Q ss_pred             ---------------------CC-------------CEEEEEeCCCeEEEEEceeccc
Q 014977          272 ---------------------NV-------------QWLAVASDKGTVHIFSLRVRVV  295 (415)
Q Consensus       272 ---------------------dg-------------~~l~s~s~dg~i~vwd~~~~~~  295 (415)
                                           ++             -.|.+.+.|-.+.+||+....-
T Consensus       399 ~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L  456 (636)
T KOG2394|consen  399 DSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVL  456 (636)
T ss_pred             cccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhc
Confidence                                 01             1467888999999999977543

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.38  E-value=9.7e-11  Score=98.82  Aligned_cols=113  Identities=15%  Similarity=0.185  Sum_probs=77.0

Q ss_pred             eEEEecCCCceEEEEeCCc---------cCeEEEE--EcCCcceEEEec-CccceEEEEeCCCCCEEEEE--eCCCcEEE
Q 014977          177 LCCLSHHSSTSVLACPGLQ---------RGQVRIE--HFGLNMIKLINA-HDSHIACFTLTLDGLLLATA--STRGTLIR  242 (415)
Q Consensus       177 ~~~~~~~~~~~~l~~~g~~---------dg~v~i~--~~~~~~~~~~~~-~~~~i~~l~~sp~g~~l~s~--s~dg~~I~  242 (415)
                      -+.+.|+++|.+|++....         -+...++  +.....+..+.- ..++|.+++|+|+|+.+|+.  ..++. |.
T Consensus         8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~-v~   86 (194)
T PF08662_consen    8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAK-VT   86 (194)
T ss_pred             eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcc-cE
Confidence            3556666666665543321         1223332  233344444443 34579999999999987654  45677 99


Q ss_pred             EEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCC---CeEEEEEceeccc
Q 014977          243 IFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK---GTVHIFSLRVRVV  295 (415)
Q Consensus       243 vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d---g~i~vwd~~~~~~  295 (415)
                      +||++ ++.+..+..    ..+..+.|+|+|++|++++.+   |.|.+||+++.+.
T Consensus        87 lyd~~-~~~i~~~~~----~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~  137 (194)
T PF08662_consen   87 LYDVK-GKKIFSFGT----QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK  137 (194)
T ss_pred             EEcCc-ccEeEeecC----CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEE
Confidence            99996 777766653    367889999999999998754   6799999996664

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.36  E-value=2.4e-08  Score=92.77  Aligned_cols=278  Identities=13%  Similarity=0.136  Sum_probs=163.0

Q ss_pred             CcEEEEEccCC--ceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCC--C--EEEEEE-ccCcee
Q 014977           65 CGFRIYNCEPF--KETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQS--R--CIGEFA-FRSDVR  137 (415)
Q Consensus        65 ~~v~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~--~--~~~~~~-~~~~i~  137 (415)
                      +.|.+|+++..  .......+ ........+.+++++..|.+..... ...+.|..|++...  +  .+.... ......
T Consensus        13 ~gI~~~~~d~~~g~l~~~~~~-~~~~~Ps~l~~~~~~~~LY~~~e~~-~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~   90 (345)
T PF10282_consen   13 GGIYVFRFDEETGTLTLVQTV-AEGENPSWLAVSPDGRRLYVVNEGS-GDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPC   90 (345)
T ss_dssp             TEEEEEEEETTTTEEEEEEEE-EESSSECCEEE-TTSSEEEEEETTS-STTTEEEEEEEETTTTEEEEEEEEEESSSCEE
T ss_pred             CcEEEEEEcCCCCCceEeeee-cCCCCCceEEEEeCCCEEEEEEccc-cCCCCEEEEEECCCcceeEEeeeeccCCCCcE
Confidence            78999988432  22222211 2233334466677665554443310 12389999987764  2  233333 456667


Q ss_pred             EEEEcCCeEEEE----eCCeEEEEEcCC-ceeeeE---Ee--c------cCCCcceEEEecCCCceEEEEeCCccCeEEE
Q 014977          138 SVKLSRDRIVVV----LEHKIYVYSFVD-LKLLHQ---IE--T------LANLRGLCCLSHHSSTSVLACPGLQRGQVRI  201 (415)
Q Consensus       138 ~l~~~~~~~~~~----~d~~i~iwd~~~-~~~~~~---~~--~------~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i  201 (415)
                      .++++|++.+++    .++.|.++++.. +.....   +.  +      .........+.++|++++++++.-....|.+
T Consensus        91 ~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~  170 (345)
T PF10282_consen   91 HIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYV  170 (345)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEE
T ss_pred             EEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEE
Confidence            899999998877    589999999976 443332   11  0      0122345667777888777765544557877


Q ss_pred             EEcCCcc--e---EEEe-cCccceEEEEeCCCCCEEEEEeCCCcEEEEEECC--CCc--EEEEEec---CC-CcccEEEE
Q 014977          202 EHFGLNM--I---KLIN-AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTV--DGT--RLQEVRR---GV-DRAEIYSI  267 (415)
Q Consensus       202 ~~~~~~~--~---~~~~-~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~--~~~--~~~~~~~---~~-~~~~v~~l  267 (415)
                      +..+...  +   ..+. ........++|+|+|+++++..+....|.++++.  ++.  .+..+..   .. .......|
T Consensus       171 ~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i  250 (345)
T PF10282_consen  171 YDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEI  250 (345)
T ss_dssp             EEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEE
T ss_pred             EEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeE
Confidence            6554432  2   2222 3345678999999999887776654449999987  443  2333322   11 11257889


Q ss_pred             EeCCCCCEEEEEe-CCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCccc
Q 014977          268 ALSPNVQWLAVAS-DKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYF  346 (415)
Q Consensus       268 ~~spdg~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (415)
                      .++|||++|+++. ..+.|.+|+++.....                                      +..         
T Consensus       251 ~ispdg~~lyvsnr~~~sI~vf~~d~~~g~--------------------------------------l~~---------  283 (345)
T PF10282_consen  251 AISPDGRFLYVSNRGSNSISVFDLDPATGT--------------------------------------LTL---------  283 (345)
T ss_dssp             EE-TTSSEEEEEECTTTEEEEEEECTTTTT--------------------------------------EEE---------
T ss_pred             EEecCCCEEEEEeccCCEEEEEEEecCCCc--------------------------------------eEE---------
Confidence            9999999988765 4668999999543211                                      000         


Q ss_pred             ccccceEEEEeCCCceEEEEecCC-CEEEEEEe-CCcEEEEEEecCCCCcEEE
Q 014977          347 SSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSM-DGSFYRCSFDPVHGGEMLQ  397 (415)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~-dg~~~~~~~~~~~~~~~~~  397 (415)
                           ...+.......--++++++ +.|++++. ++.|.+|.++...| .+..
T Consensus       284 -----~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG-~l~~  330 (345)
T PF10282_consen  284 -----VQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTG-KLTP  330 (345)
T ss_dssp             -----EEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT-EEEE
T ss_pred             -----EEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCC-cEEE
Confidence                 1223333233445778888 66777776 58999999997654 4443

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.36  E-value=5.1e-10  Score=107.19  Aligned_cols=174  Identities=15%  Similarity=0.093  Sum_probs=119.4

Q ss_pred             CeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE---e---CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCce
Q 014977          114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---L---EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS  187 (415)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~---~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (415)
                      ..|.++|...+.......+...+....|+||++.++   .   ...|++||+.+++..... ....  ......+++++.
T Consensus       170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~-~~~~--~~~~~~~spDg~  246 (417)
T TIGR02800       170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA-SFPG--MNGAPAFSPDGS  246 (417)
T ss_pred             ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee-cCCC--CccceEECCCCC
Confidence            578888875444444344666788999999999887   1   257999999887554322 2222  223345566676


Q ss_pred             EEEEeCCccC--eEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCC---cEEEEEECCCCcEEEEEecCCCcc
Q 014977          188 VLACPGLQRG--QVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRG---TLIRIFNTVDGTRLQEVRRGVDRA  262 (415)
Q Consensus       188 ~l~~~g~~dg--~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg---~~I~vwd~~~~~~~~~~~~~~~~~  262 (415)
                      .|+++.+.++  .|++++........+..+........|+|+|+.|+..+..+   . |+++|+.+++.. .+..  +..
T Consensus       247 ~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~-iy~~d~~~~~~~-~l~~--~~~  322 (417)
T TIGR02800       247 KLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQ-IYMMDADGGEVR-RLTF--RGG  322 (417)
T ss_pred             EEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCce-EEEEECCCCCEE-Eeec--CCC
Confidence            6666554444  46667777666666666665566789999999887665432   4 888888777653 3433  334


Q ss_pred             cEEEEEeCCCCCEEEEEeCCC---eEEEEEceecc
Q 014977          263 EIYSIALSPNVQWLAVASDKG---TVHIFSLRVRV  294 (415)
Q Consensus       263 ~v~~l~~spdg~~l~s~s~dg---~i~vwd~~~~~  294 (415)
                      .+..+.|+|+|++|+.++.++   .|.+||+.++.
T Consensus       323 ~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~  357 (417)
T TIGR02800       323 YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG  357 (417)
T ss_pred             CccCeEECCCCCEEEEEEccCCceEEEEEeCCCCC
Confidence            567889999999999888776   78888887744

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.32  E-value=6.7e-10  Score=106.35  Aligned_cols=212  Identities=14%  Similarity=0.101  Sum_probs=137.1

Q ss_pred             cEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCe
Q 014977           66 GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDR  145 (415)
Q Consensus        66 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~  145 (415)
                      .|.++|.+..... .  +..+...+....|++++..++......  ....|.+||+.+++......+...+.++.|+||+
T Consensus       171 ~l~~~d~~g~~~~-~--l~~~~~~~~~p~~Spdg~~la~~~~~~--~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg  245 (417)
T TIGR02800       171 ELQVADYDGANPQ-T--ITRSREPILSPAWSPDGQKLAYVSFES--GKPEIYVQDLATGQREKVASFPGMNGAPAFSPDG  245 (417)
T ss_pred             eEEEEcCCCCCCE-E--eecCCCceecccCCCCCCEEEEEEcCC--CCcEEEEEECCCCCEEEeecCCCCccceEECCCC
Confidence            3666666532221 1  214444577888999998777654320  1158999999988766555566677789999999


Q ss_pred             EEEE----e--CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccC--eEEEEEcCCcceEEEecCcc
Q 014977          146 IVVV----L--EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRG--QVRIEHFGLNMIKLINAHDS  217 (415)
Q Consensus       146 ~~~~----~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg--~v~i~~~~~~~~~~~~~~~~  217 (415)
                      ..++    .  +..|++||+.+++.. .+..+...  .....+++++..|+++....+  .|++++........+..+..
T Consensus       246 ~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~--~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~  322 (417)
T TIGR02800       246 SKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGI--DTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGG  322 (417)
T ss_pred             CEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCC--CCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCC
Confidence            7665    1  346999998876543 33222221  123345567777766554444  45556666666666666667


Q ss_pred             ceEEEEeCCCCCEEEEEeCCC---cEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCC---eEEEEEc
Q 014977          218 HIACFTLTLDGLLLATASTRG---TLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKG---TVHIFSL  290 (415)
Q Consensus       218 ~i~~l~~sp~g~~l~s~s~dg---~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg---~i~vwd~  290 (415)
                      .+..+.|+|+|++|+.++.++   . |.+||+.++... .+...   .......|+|||++|+..+.++   .+++.+.
T Consensus       323 ~~~~~~~spdg~~i~~~~~~~~~~~-i~~~d~~~~~~~-~l~~~---~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~  396 (417)
T TIGR02800       323 YNASPSWSPDGDLIAFVHREGGGFN-IAVMDLDGGGER-VLTDT---GLDESPSFAPNGRMILYATTRGGRGVLGLVST  396 (417)
T ss_pred             CccCeEECCCCCEEEEEEccCCceE-EEEEeCCCCCeE-EccCC---CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence            778889999999999888765   6 899998876543 33321   1234568999999988877765   3455443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.32  E-value=7.7e-09  Score=94.04  Aligned_cols=236  Identities=12%  Similarity=0.036  Sum_probs=150.9

Q ss_pred             EeCCCCEEEEEe-----------CCcEEEEEccCCceeEEEeccCC-----CeeEEEEeeeCCeEEEEecCCCCCCCCCe
Q 014977           52 WNQDYGCFAAGT-----------SCGFRIYNCEPFKETFRRDLKSG-----GFRIVEMLFRCNILALVGAGDNSQYPPTK  115 (415)
Q Consensus        52 ~sp~g~~la~g~-----------d~~v~iw~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~s~~~d~~~~~~~  115 (415)
                      ++|||+.|+++.           +..|.+||..+.+...+..+...     ......+.++++++.+.....+   .+..
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~---p~~~  129 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFS---PSPA  129 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCC---CCCE
Confidence            899999887654           47899999999887766554222     2233467889998776654432   2399


Q ss_pred             EEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE-eCCeEEEEEcCC-ceee-eE---EeccCCCcceE-EEecCCCceE
Q 014977          116 VIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFVD-LKLL-HQ---IETLANLRGLC-CLSHHSSTSV  188 (415)
Q Consensus       116 i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~-~~~~-~~---~~~~~~~~~~~-~~~~~~~~~~  188 (415)
                      |.+.|+.+++.+.++.-.....-...+++..++. .|+......+.+ ++.. ..   +.....++... .+.+ .++.+
T Consensus       130 V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~-~dg~~  208 (352)
T TIGR02658       130 VGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSN-KSGRL  208 (352)
T ss_pred             EEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEc-CCCcE
Confidence            9999999999999998655444444555444443 566665554432 2211 11   11100100000 1222 14555


Q ss_pred             EEEeCCccCeEEEEEcCCc------ceEEEec-------CccceEEEEeCCCCCEEEEEeC----------CCcEEEEEE
Q 014977          189 LACPGLQRGQVRIEHFGLN------MIKLINA-------HDSHIACFTLTLDGLLLATAST----------RGTLIRIFN  245 (415)
Q Consensus       189 l~~~g~~dg~v~i~~~~~~------~~~~~~~-------~~~~i~~l~~sp~g~~l~s~s~----------dg~~I~vwd  245 (415)
                      +..+  ..|+|.+-+..+.      ....+..       ..+.+.-++++++|+.+++...          .+. |.++|
T Consensus       209 ~~vs--~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~-V~ViD  285 (352)
T TIGR02658       209 VWPT--YTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRF-LFVVD  285 (352)
T ss_pred             EEEe--cCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCE-EEEEE
Confidence            5443  3499998553332      1222111       1233445999999998887431          135 99999


Q ss_pred             CCCCcEEEEEecCCCcccEEEEEeCCCCC-EEEEEe-CCCeEEEEEceecccCC
Q 014977          246 TVDGTRLQEVRRGVDRAEIYSIALSPNVQ-WLAVAS-DKGTVHIFSLRVRVVGE  297 (415)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~v~~l~~spdg~-~l~s~s-~dg~i~vwd~~~~~~~~  297 (415)
                      ..+++.+..+..+   ..+..++++||++ +|++.. .++.|.++|+.+++...
T Consensus       286 ~~t~kvi~~i~vG---~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~  336 (352)
T TIGR02658       286 AKTGKRLRKIELG---HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELS  336 (352)
T ss_pred             CCCCeEEEEEeCC---CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEe
Confidence            9999999998853   3789999999999 877666 57889999999988653

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.30  E-value=9.1e-10  Score=104.81  Aligned_cols=201  Identities=11%  Similarity=0.046  Sum_probs=127.7

Q ss_pred             CCCeeEEEEeeeCCeEE--E--EecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE--e--CC--eE
Q 014977           85 SGGFRIVEMLFRCNILA--L--VGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--L--EH--KI  154 (415)
Q Consensus        85 ~~~~~~~~~~~~~~~~~--l--~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~--d~--~i  154 (415)
                      ..........|+|++..  +  ++...    ....|.+.++..++..+.....+......|+|||+.++  .  ++  .+
T Consensus       182 ~~~~~~~sP~wSPDG~~~~~~y~S~~~----g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di  257 (428)
T PRK01029        182 QEHSLSITPTWMHIGSGFPYLYVSYKL----GVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDL  257 (428)
T ss_pred             cCCCCcccceEccCCCceEEEEEEccC----CCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcce
Confidence            34445567789999642  3  33211    12578888998887655555666667789999998877  3  22  33


Q ss_pred             --EEEEcCCc---eeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEc--C--CcceEEEecCccceEEEEeC
Q 014977          155 --YVYSFVDL---KLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHF--G--LNMIKLINAHDSHIACFTLT  225 (415)
Q Consensus       155 --~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~--~--~~~~~~~~~~~~~i~~l~~s  225 (415)
                        .+|++..+   +..........  ......++|++..|+++...+|...+|..  .  +.....+..+...+....|+
T Consensus       258 ~~~~~~~~~g~~g~~~~lt~~~~~--~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wS  335 (428)
T PRK01029        258 FIQSFSLETGAIGKPRRLLNEAFG--TQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWS  335 (428)
T ss_pred             eEEEeecccCCCCcceEeecCCCC--CcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeEC
Confidence              44676542   22222222211  12345667788888876656676555443  2  23345555555677889999


Q ss_pred             CCCCEEEEEeCC---CcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeC---CCeEEEEEceeccc
Q 014977          226 LDGLLLATASTR---GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASD---KGTVHIFSLRVRVV  295 (415)
Q Consensus       226 p~g~~l~s~s~d---g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~---dg~i~vwd~~~~~~  295 (415)
                      |||+.|+..+.+   .. |.+||+.+++.. .+..  ....+....|+|||++|+..+.   ...|++||+..++.
T Consensus       336 PDG~~Laf~~~~~g~~~-I~v~dl~~g~~~-~Lt~--~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~  407 (428)
T PRK01029        336 PDGKKIAFCSVIKGVRQ-ICVYDLATGRDY-QLTT--SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT  407 (428)
T ss_pred             CCCCEEEEEEcCCCCcE-EEEEECCCCCeE-EccC--CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence            999988876543   35 999999888764 3433  2235677899999998875443   34688889887654

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.30  E-value=9.8e-10  Score=101.02  Aligned_cols=235  Identities=11%  Similarity=0.096  Sum_probs=157.1

Q ss_pred             EEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCC--eEEEEecCCCCCCCCCeEEEEECCCCC
Q 014977           48 ISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCN--ILALVGAGDNSQYPPTKVIIWDDHQSR  125 (415)
Q Consensus        48 ~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~s~~~d~~~~~~~i~vwd~~~~~  125 (415)
                      +++.|+.|..+.|--..+.+.+|+......... .+  +...+..+.++|.  -..++.---..+-....|++|......
T Consensus       129 W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~-kl--~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~  205 (566)
T KOG2315|consen  129 WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQH-KL--SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEG  205 (566)
T ss_pred             cccccccchhhhhhhhcceEEEEecCCccceee-ee--eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccc
Confidence            688888887766655588899999987544332 33  3445556666654  333332111111234789999865332


Q ss_pred             EEEEE---E-ccCceeEEEEcCCeEEEE---------------eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCc
Q 014977          126 CIGEF---A-FRSDVRSVKLSRDRIVVV---------------LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSST  186 (415)
Q Consensus       126 ~~~~~---~-~~~~i~~l~~~~~~~~~~---------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (415)
                      .-..+   . +...-..+.|++-|.-++               ...+++++++....+...+. ...++..+.|+++...
T Consensus       206 ~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~E  284 (566)
T KOG2315|consen  206 QHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGRE  284 (566)
T ss_pred             ccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCE
Confidence            22221   1 344455678887654333               13578899887444443333 3556666666666543


Q ss_pred             eEEEEeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeC---CCcEEEEEECCCCcEEEEEecCCCccc
Q 014977          187 SVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATAST---RGTLIRIFNTVDGTRLQEVRRGVDRAE  263 (415)
Q Consensus       187 ~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~---dg~~I~vwd~~~~~~~~~~~~~~~~~~  263 (415)
                       +.++-|.+--.+.|++.++..+..+.  .++-+++-|+|.|++|+.++-   .|. |.|||+.+.+++..+...    .
T Consensus       285 -F~VvyGfMPAkvtifnlr~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~-mEvwDv~n~K~i~~~~a~----~  356 (566)
T KOG2315|consen  285 -FAVVYGFMPAKVTIFNLRGKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGD-MEVWDVPNRKLIAKFKAA----N  356 (566)
T ss_pred             -EEEEEecccceEEEEcCCCCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCc-eEEEeccchhhccccccC----C
Confidence             33445888899999999988877664  567788999999999988775   477 999999998888877752    3


Q ss_pred             EEEEEeCCCCCEEEEEeC------CCeEEEEEceecc
Q 014977          264 IYSIALSPNVQWLAVASD------KGTVHIFSLRVRV  294 (415)
Q Consensus       264 v~~l~~spdg~~l~s~s~------dg~i~vwd~~~~~  294 (415)
                      -+-+.|+|||+++++++.      |+.++||+.....
T Consensus       357 tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~  393 (566)
T KOG2315|consen  357 TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSL  393 (566)
T ss_pred             ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCce
Confidence            456889999999998875      6779999986543

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.29  E-value=9.7e-10  Score=103.70  Aligned_cols=287  Identities=14%  Similarity=0.137  Sum_probs=194.7

Q ss_pred             CCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCce-------------eEEEeccCCCeeEEEEeeeCCeEEEEecCC
Q 014977           42 VDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE-------------TFRRDLKSGGFRIVEMLFRCNILALVGAGD  107 (415)
Q Consensus        42 ~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  107 (415)
                      .......+++|+....++|+|+ ||.++|..+++...             ...+.+.+|...+.-+.|+.+...|.+...
T Consensus        12 PnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt   91 (1189)
T KOG2041|consen   12 PNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT   91 (1189)
T ss_pred             CCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC
Confidence            4556789999999999999999 99999998864211             122345788999999999999999998888


Q ss_pred             CCCCCCCeEEEEECCCCCEEEEEE---ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceee-eEEeccCCCcceEEE
Q 014977          108 NSQYPPTKVIIWDDHQSRCIGEFA---FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLL-HQIETLANLRGLCCL  180 (415)
Q Consensus       108 d~~~~~~~i~vwd~~~~~~~~~~~---~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~  180 (415)
                      +     |.|.||-+-.|....++.   .++.|.+++|+.||..++   .||.|.+=.+...+.- +.+++.    ....+
T Consensus        92 ~-----GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~----~l~hv  162 (1189)
T KOG2041|consen   92 S-----GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQ----LLAHV  162 (1189)
T ss_pred             C-----ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchh----eccce
Confidence            7     999999988776544432   567899999999998887   7898888776433221 112211    22234


Q ss_pred             ecCCCceEEEEeCCccCeEEEEEcCCcce--------EEE----ecCccceEEEEeC--------CCCCEEEEEeCCCcE
Q 014977          181 SHHSSTSVLACPGLQRGQVRIEHFGLNMI--------KLI----NAHDSHIACFTLT--------LDGLLLATASTRGTL  240 (415)
Q Consensus       181 ~~~~~~~~l~~~g~~dg~v~i~~~~~~~~--------~~~----~~~~~~i~~l~~s--------p~g~~l~s~s~dg~~  240 (415)
                      .++++...+.+ +-.+|.+.+++..+.-.        ...    ......|..+.|.        |+...|+++-.+|. 
T Consensus       163 ~ws~D~~~~Lf-~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr-  240 (1189)
T KOG2041|consen  163 LWSEDLEQALF-KKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGR-  240 (1189)
T ss_pred             eecccHHHHHh-hhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCce-
Confidence            45555555554 56788999977665221        111    1122335556664        46678999999998 


Q ss_pred             EEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCc
Q 014977          241 IRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFD  320 (415)
Q Consensus       241 I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (415)
                      +.|-.-........+..   .-.+..+.|+++|..||+++.+..-.     ..+.                         
T Consensus       241 ~QiMR~eND~~Pvv~dt---gm~~vgakWnh~G~vLAvcG~~~da~-----~~~d-------------------------  287 (1189)
T KOG2041|consen  241 MQIMRSENDPEPVVVDT---GMKIVGAKWNHNGAVLAVCGNDSDAD-----EPTD-------------------------  287 (1189)
T ss_pred             ehhhhhcCCCCCeEEec---ccEeecceecCCCcEEEEccCccccc-----Cccc-------------------------
Confidence            88765433332223443   23688999999999999998765210     0110                         


Q ss_pred             ccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCCCEEEEEEeCCcEEEEEEecC
Q 014977          321 TLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDPV  390 (415)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dg~~~~~~~~~~  390 (415)
                              .|....++.++          ..+.++++|......+.|...+--++...|+.||+-++.|+
T Consensus       288 --------~n~v~Fysp~G----------~i~gtlkvpg~~It~lsWEg~gLriA~AvdsfiyfanIRP~  339 (1189)
T KOG2041|consen  288 --------SNKVHFYSPYG----------HIVGTLKVPGSCITGLSWEGTGLRIAIAVDSFIYFANIRPE  339 (1189)
T ss_pred             --------cceEEEeccch----------hheEEEecCCceeeeeEEcCCceEEEEEecceEEEEeeccc
Confidence                    01122222232          23458899988888888887777788888999999888873

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.29  E-value=7.5e-09  Score=88.96  Aligned_cols=214  Identities=12%  Similarity=0.165  Sum_probs=141.7

Q ss_pred             CcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECC-CCCEEEEEE---ccCceeEEE
Q 014977           65 CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH-QSRCIGEFA---FRSDVRSVK  140 (415)
Q Consensus        65 ~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~-~~~~~~~~~---~~~~i~~l~  140 (415)
                      +.|.|||=.....+.+..   -...|.++.+.++...++..        +.|.||... +-+.++.+.   .+..+.+++
T Consensus        75 NkviIWDD~k~~~i~el~---f~~~I~~V~l~r~riVvvl~--------~~I~VytF~~n~k~l~~~et~~NPkGlC~~~  143 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELS---FNSEIKAVKLRRDRIVVVLE--------NKIYVYTFPDNPKLLHVIETRSNPKGLCSLC  143 (346)
T ss_pred             ceEEEEecccCcEEEEEE---eccceeeEEEcCCeEEEEec--------CeEEEEEcCCChhheeeeecccCCCceEeec
Confidence            458999944334444433   45567788888888777763        899999976 446666665   244455555


Q ss_pred             EcCCeEEEE----eCCeEEEEEcCCcee--eeEEeccCCCcceEEEecCCCceEEEEeCCccCe-EEEEE-cCCcceEEE
Q 014977          141 LSRDRIVVV----LEHKIYVYSFVDLKL--LHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQ-VRIEH-FGLNMIKLI  212 (415)
Q Consensus       141 ~~~~~~~~~----~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~-v~i~~-~~~~~~~~~  212 (415)
                      -..+..+++    .-|.|.|-|+...+.  ...+..|...+.++  +.+-+|..+|+ ++..|+ |+||+ .++..+..+
T Consensus       144 ~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv--~Ln~~Gt~vAT-aStkGTLIRIFdt~~g~~l~E~  220 (346)
T KOG2111|consen  144 PTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACV--ALNLQGTLVAT-ASTKGTLIRIFDTEDGTLLQEL  220 (346)
T ss_pred             CCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEE--EEcCCccEEEE-eccCcEEEEEEEcCCCcEeeee
Confidence            555666666    579999999976554  46678888855544  45556777776 667776 67765 556677777


Q ss_pred             ec--CccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEE-----------Eec-----------CCCcccEEEEE
Q 014977          213 NA--HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQE-----------VRR-----------GVDRAEIYSIA  268 (415)
Q Consensus       213 ~~--~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~-----------~~~-----------~~~~~~v~~l~  268 (415)
                      +.  ....|++|+|||++.+||++|..|+ ++||.++....-..           +..           ....++..-++
T Consensus       221 RRG~d~A~iy~iaFSp~~s~LavsSdKgT-lHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~  299 (346)
T KOG2111|consen  221 RRGVDRADIYCIAFSPNSSWLAVSSDKGT-LHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIA  299 (346)
T ss_pred             ecCCchheEEEEEeCCCccEEEEEcCCCe-EEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEE
Confidence            63  3568999999999999999999999 99998865321100           110           00123444566


Q ss_pred             eCCCCCEEEEEeCCCeEEEEEceec
Q 014977          269 LSPNVQWLAVASDKGTVHIFSLRVR  293 (415)
Q Consensus       269 ~spdg~~l~s~s~dg~i~vwd~~~~  293 (415)
                      |-.+.+.++..+.||+-+=+.+...
T Consensus       300 fg~~~nsvi~i~~Dgsy~k~~f~~~  324 (346)
T KOG2111|consen  300 FGSETNTVIAICADGSYYKFKFDPK  324 (346)
T ss_pred             ecCCCCeEEEEEeCCcEEEEEeccc
Confidence            7666566666777886555554433

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.28  E-value=1.2e-09  Score=104.77  Aligned_cols=214  Identities=14%  Similarity=0.078  Sum_probs=128.8

Q ss_pred             cEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCe
Q 014977           66 GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDR  145 (415)
Q Consensus        66 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~  145 (415)
                      .+.++|.+......   +......+....|+|++..++....+.  ....|.+||+.+++...............|+||+
T Consensus       199 ~l~i~d~dG~~~~~---l~~~~~~~~~p~wSPDG~~La~~s~~~--g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG  273 (448)
T PRK04792        199 QLMIADYDGYNEQM---LLRSPEPLMSPAWSPDGRKLAYVSFEN--RKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDG  273 (448)
T ss_pred             EEEEEeCCCCCceE---eecCCCcccCceECCCCCEEEEEEecC--CCcEEEEEECCCCCeEEecCCCCCcCCeeECCCC
Confidence            34555655432211   224455677889999997766543320  1147999999888764433344455678999999


Q ss_pred             EEEE----eCC--eEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEE--EEcCCcceEEEecCcc
Q 014977          146 IVVV----LEH--KIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI--EHFGLNMIKLINAHDS  217 (415)
Q Consensus       146 ~~~~----~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i--~~~~~~~~~~~~~~~~  217 (415)
                      ..++    .++  .|+++|+.+++.. .+..+..  ......+++++..|+++...++...+  ++........+.....
T Consensus       274 ~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~--~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~  350 (448)
T PRK04792        274 KKLALVLSKDGQPEIYVVDIATKALT-RITRHRA--IDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGE  350 (448)
T ss_pred             CEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCC--CccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCC
Confidence            8776    244  4888898876543 3333322  22344566677777776655555445  4554444554443333


Q ss_pred             ceEEEEeCCCCCEEEEEeCC-Cc-EEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCC-C--eEEEEEce
Q 014977          218 HIACFTLTLDGLLLATASTR-GT-LIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK-G--TVHIFSLR  291 (415)
Q Consensus       218 ~i~~l~~sp~g~~l~s~s~d-g~-~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d-g--~i~vwd~~  291 (415)
                      .....+|+|||++|+..+.+ +. .|.++|+.+++.. .+... .  ......|+|||++|+..+.+ +  .+++++++
T Consensus       351 ~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~--~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~  425 (448)
T PRK04792        351 QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-R--LDESPSVAPNGTMVIYSTTYQGKQVLAAVSID  425 (448)
T ss_pred             CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-C--CCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence            34567899999988776553 32 2666788777653 33321 1  12245799999988866554 3  36666663

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.28  E-value=6.6e-10  Score=106.55  Aligned_cols=218  Identities=11%  Similarity=0.039  Sum_probs=134.6

Q ss_pred             CCCCCceEEEEEeCCCCEEEEEe--CC--cEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEe-cCCCCCCCCCe
Q 014977           41 DVDEIELISVSWNQDYGCFAAGT--SC--GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVG-AGDNSQYPPTK  115 (415)
Q Consensus        41 ~~h~~~V~~l~~sp~g~~la~g~--d~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-~~~d~~~~~~~  115 (415)
                      ..+...+.+..|+|||+.|+..+  ++  .|.+||+.+++......+   ........|+|++..++. ...+   ....
T Consensus       214 ~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~---~g~~~~~~wSPDG~~La~~~~~~---g~~~  287 (448)
T PRK04792        214 LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF---PGINGAPRFSPDGKKLALVLSKD---GQPE  287 (448)
T ss_pred             ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC---CCCcCCeeECCCCCEEEEEEeCC---CCeE
Confidence            34566788999999999998766  33  477778876554322222   222335789999876553 3333   1135


Q ss_pred             EEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE--e----CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEE
Q 014977          116 VIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--L----EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVL  189 (415)
Q Consensus       116 i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  189 (415)
                      |.++|+.+++......+........|+||+..++  .    ...|+++|+.+++... +.....  ......++|++.+|
T Consensus       288 Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~--~~~~~~~SpDG~~l  364 (448)
T PRK04792        288 IYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGE--QNLGGSITPDGRSM  364 (448)
T ss_pred             EEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCC--CCcCeeECCCCCEE
Confidence            8888988877654444555667889999998776  2    2467888887766433 221111  11223456667777


Q ss_pred             EEeCCccCeEEE--EEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCC-c-EEEEEECCCCcEEEEEecCCCcccEE
Q 014977          190 ACPGLQRGQVRI--EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRG-T-LIRIFNTVDGTRLQEVRRGVDRAEIY  265 (415)
Q Consensus       190 ~~~g~~dg~v~i--~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg-~-~I~vwd~~~~~~~~~~~~~~~~~~v~  265 (415)
                      ++++..++...|  .+........+.... ......|+|||+.|+..+.++ . .+++++. +|+....+..  ..+.+.
T Consensus       365 ~~~~~~~g~~~I~~~dl~~g~~~~lt~~~-~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~--~~g~~~  440 (448)
T PRK04792        365 IMVNRTNGKFNIARQDLETGAMQVLTSTR-LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPA--GQGEVK  440 (448)
T ss_pred             EEEEecCCceEEEEEECCCCCeEEccCCC-CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcC--CCCCcC
Confidence            776655555555  455554444444321 223457999999887665443 2 2677786 6666666654  445677


Q ss_pred             EEEeCC
Q 014977          266 SIALSP  271 (415)
Q Consensus       266 ~l~~sp  271 (415)
                      ..+|+|
T Consensus       441 ~p~Wsp  446 (448)
T PRK04792        441 SPAWSP  446 (448)
T ss_pred             CCccCC
Confidence            788887

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.27  E-value=5.8e-09  Score=100.17  Aligned_cols=173  Identities=17%  Similarity=0.076  Sum_probs=116.3

Q ss_pred             eEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE--e----CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceE
Q 014977          115 KVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--L----EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSV  188 (415)
Q Consensus       115 ~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (415)
                      .|.++|...+.......+...+....|+|||+.++  .    ...|++||+.+++..... ....  ......++|++..
T Consensus       180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~-~~~g--~~~~~~~SpDG~~  256 (430)
T PRK00178        180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT-NFEG--LNGAPAWSPDGSK  256 (430)
T ss_pred             EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc-CCCC--CcCCeEECCCCCE
Confidence            58888876555444445777889999999998876  1    246999999887654322 1121  1224556677777


Q ss_pred             EEEeCCccC--eEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCC-C--cEEEEEECCCCcEEEEEecCCCccc
Q 014977          189 LACPGLQRG--QVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTR-G--TLIRIFNTVDGTRLQEVRRGVDRAE  263 (415)
Q Consensus       189 l~~~g~~dg--~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d-g--~~I~vwd~~~~~~~~~~~~~~~~~~  263 (415)
                      |+++...+|  .|++++........+..+........|+|||+.|+..+.. +  . |+++|+.+++... +..  ....
T Consensus       257 la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~-iy~~d~~~g~~~~-lt~--~~~~  332 (430)
T PRK00178        257 LAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQ-IYKVNVNGGRAER-VTF--VGNY  332 (430)
T ss_pred             EEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCce-EEEEECCCCCEEE-eec--CCCC
Confidence            776554555  4666777776667676666667778999999987766542 2  4 7788887777543 322  1122


Q ss_pred             EEEEEeCCCCCEEEEEeCC-C--eEEEEEceecc
Q 014977          264 IYSIALSPNVQWLAVASDK-G--TVHIFSLRVRV  294 (415)
Q Consensus       264 v~~l~~spdg~~l~s~s~d-g--~i~vwd~~~~~  294 (415)
                      .....|+|||++|+..+.+ +  .|.+||+.+++
T Consensus       333 ~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~  366 (430)
T PRK00178        333 NARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGS  366 (430)
T ss_pred             ccceEECCCCCEEEEEEccCCceEEEEEECCCCC
Confidence            3457899999999877653 3  58888888765

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.26  E-value=3.7e-09  Score=97.13  Aligned_cols=237  Identities=18%  Similarity=0.198  Sum_probs=156.4

Q ss_pred             eEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCC------CCCeEEEEE
Q 014977           47 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQY------PPTKVIIWD  120 (415)
Q Consensus        47 V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~------~~~~i~vwd  120 (415)
                      =+-+.|||-|.+|++-...+|.+|--+....+.+  |  .+..+.-+.|+|+-.+|++-+..|.-      ....++|||
T Consensus       213 etyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~R--F--~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD  288 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQGIALWGGESFDRIQR--F--YHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD  288 (698)
T ss_pred             eeeEEecCCceEEEEEeccceeeecCccHHHHHh--c--cCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence            4678999999999999988999998776665443  2  34456677899999999987665443      236899999


Q ss_pred             CCCCCEEEEEEc---cCce-eEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCC
Q 014977          121 DHQSRCIGEFAF---RSDV-RSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL  194 (415)
Q Consensus       121 ~~~~~~~~~~~~---~~~i-~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  194 (415)
                      +.+|...+.+..   ...+ .-+.|+.|+++++  ....|.||+.....++..-..  ...++..|+|+|.+.+||+=.-
T Consensus       289 I~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Ksl--ki~gIr~FswsP~~~llAYwtp  366 (698)
T KOG2314|consen  289 IATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSL--KISGIRDFSWSPTSNLLAYWTP  366 (698)
T ss_pred             ccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeeccccc--CCccccCcccCCCcceEEEEcc
Confidence            999998888773   2222 2368999999999  678999999766444322222  2225677888888878876322


Q ss_pred             ccC----eEEE-EEcCCcceEEEecCccceEEEEeCCCCCEEEEEeC-------CCc--EEEEEECCCCc-EEEEEecCC
Q 014977          195 QRG----QVRI-EHFGLNMIKLINAHDSHIACFTLTLDGLLLATAST-------RGT--LIRIFNTVDGT-RLQEVRRGV  259 (415)
Q Consensus       195 ~dg----~v~i-~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~-------dg~--~I~vwd~~~~~-~~~~~~~~~  259 (415)
                      ...    .+.+ -..+.+.+++..-+.-.-..+.|-.+|.+|+.--.       .|.  .+.|+.++... ++..+.   
T Consensus       367 e~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve---  443 (698)
T KOG2314|consen  367 ETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE---  443 (698)
T ss_pred             cccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee---
Confidence            221    2223 22333444444334333345778888988875321       111  25566665443 233333   


Q ss_pred             CcccEEEEEeCCCCCEEEEEeC---CCeEEEEEcee
Q 014977          260 DRAEIYSIALSPNVQWLAVASD---KGTVHIFSLRV  292 (415)
Q Consensus       260 ~~~~v~~l~~spdg~~l~s~s~---dg~i~vwd~~~  292 (415)
                      ....|...+|-|.|..+++-+.   ..++.+|.+++
T Consensus       444 lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~  479 (698)
T KOG2314|consen  444 LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVET  479 (698)
T ss_pred             cchheeeeeeccCCCeEEEEEccccccceeEEEeec
Confidence            3457899999999998776544   35799999985

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.25  E-value=1.7e-09  Score=107.87  Aligned_cols=209  Identities=11%  Similarity=0.101  Sum_probs=141.9

Q ss_pred             EEEeccCCCeeEEEEeeeCC-eEEEEecCCCCCCCCCeEEEEECCCC-------CEEEEEE-ccCceeEEEEcCCeEEEE
Q 014977           79 FRRDLKSGGFRIVEMLFRCN-ILALVGAGDNSQYPPTKVIIWDDHQS-------RCIGEFA-FRSDVRSVKLSRDRIVVV  149 (415)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~~~~~~i~vwd~~~~-------~~~~~~~-~~~~i~~l~~~~~~~~~~  149 (415)
                      +..+++.|...+..++.++. +.+++++++|     |+|++|+...-       +...++. ....+..+...+.+..++
T Consensus      1040 lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~D-----GtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~A 1114 (1431)
T KOG1240|consen 1040 LVAHLHEHSSAVIKLAVSSEHTSLFVSGSDD-----GTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFA 1114 (1431)
T ss_pred             EeehhhhccccccceeecCCCCceEEEecCC-----ceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEE
Confidence            34456677777777777664 4899999998     99999996431       2233333 567888888888777766


Q ss_pred             ---eCCeEEEEEcCCc--e-----eeeEEeccCCCcceEE---EecCCCceEEEEeCCccCeEEEEEcCCcc-eE--EEe
Q 014977          150 ---LEHKIYVYSFVDL--K-----LLHQIETLANLRGLCC---LSHHSSTSVLACPGLQRGQVRIEHFGLNM-IK--LIN  213 (415)
Q Consensus       150 ---~d~~i~iwd~~~~--~-----~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~g~~dg~v~i~~~~~~~-~~--~~~  213 (415)
                         .||.|++.++...  +     +......+..+ .++.   +........+++ +...+.|..|+.+... ..  ...
T Consensus      1115 v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g-~vv~m~a~~~~~~S~~lvy-~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDG-VVVSMHAFTAIVQSHVLVY-ATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred             EEcCCCeEEEEEccccccccceeeeeecccccCCC-ceEEeecccccccceeEEE-EEeccceEEecchhhhhHHhhhcC
Confidence               7999999998642  1     11111222221 1222   222222224444 4456677778766532 22  223


Q ss_pred             cCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCC---CEEEEEe--CCCeEEEE
Q 014977          214 AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNV---QWLAVAS--DKGTVHIF  288 (415)
Q Consensus       214 ~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg---~~l~s~s--~dg~i~vw  288 (415)
                      ...+.|++++.+|.+.++++|+..|. +.+||++-+.++..+.-+ +..++..+..+|-.   ...++++  ..+.|.+|
T Consensus      1193 ~~hG~vTSi~idp~~~WlviGts~G~-l~lWDLRF~~~i~sw~~P-~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~w 1270 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTSRGQ-LVLWDLRFRVPILSWEHP-ARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTW 1270 (1431)
T ss_pred             ccccceeEEEecCCceEEEEecCCce-EEEEEeecCceeecccCc-ccCCcceEEeeccCCCCceEEEecccCCCceeee
Confidence            44688999999999999999999999 999999999998888755 44788888877633   4555544  46789999


Q ss_pred             EceecccC
Q 014977          289 SLRVRVVG  296 (415)
Q Consensus       289 d~~~~~~~  296 (415)
                      ++.+|.+.
T Consensus      1271 n~~~g~~~ 1278 (1431)
T KOG1240|consen 1271 NMETGLRQ 1278 (1431)
T ss_pred             ecccCcce
Confidence            99999654

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.25  E-value=3.3e-09  Score=101.91  Aligned_cols=214  Identities=12%  Similarity=0.041  Sum_probs=131.8

Q ss_pred             EEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeE
Q 014977           67 FRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRI  146 (415)
Q Consensus        67 v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~  146 (415)
                      |.++|.+.... ..  +..+...+....|+|++..++..+.+.  ....|.+||+.+++........+.+....|+|||.
T Consensus       181 l~~~d~~g~~~-~~--l~~~~~~~~~p~wSpDG~~la~~s~~~--~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~  255 (430)
T PRK00178        181 LQRSDYDGARA-VT--LLQSREPILSPRWSPDGKRIAYVSFEQ--KRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGS  255 (430)
T ss_pred             EEEECCCCCCc-eE--EecCCCceeeeeECCCCCEEEEEEcCC--CCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCC
Confidence            55555554322 11  214455678889999997776544320  12479999998887655444555666789999998


Q ss_pred             EEE----eCC--eEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCe--EEEEEcCCcceEEEecCccc
Q 014977          147 VVV----LEH--KIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQ--VRIEHFGLNMIKLINAHDSH  218 (415)
Q Consensus       147 ~~~----~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~--v~i~~~~~~~~~~~~~~~~~  218 (415)
                      .++    .++  .|++||+.+++.. .+..+..  ......+++++..|+++...++.  |++++........+......
T Consensus       256 ~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~--~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~  332 (430)
T PRK00178        256 KLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPA--IDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNY  332 (430)
T ss_pred             EEEEEEccCCCceEEEEECCCCCeE-EcccCCC--CcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCC
Confidence            776    233  6899999877643 3333222  22334566677777766555554  55555554444444433333


Q ss_pred             eEEEEeCCCCCEEEEEeCC-C-cEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCC-C--eEEEEEcee
Q 014977          219 IACFTLTLDGLLLATASTR-G-TLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK-G--TVHIFSLRV  292 (415)
Q Consensus       219 i~~l~~sp~g~~l~s~s~d-g-~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d-g--~i~vwd~~~  292 (415)
                      .....|+|+|++|+..+.+ + ..|.+||+.+++.. .+...   .......|+|||++|+..+.+ |  .|+++++..
T Consensus       333 ~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~~---~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g  407 (430)
T PRK00178        333 NARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTDT---SLDESPSVAPNGTMLIYATRQQGRGVLMLVSING  407 (430)
T ss_pred             ccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccCC---CCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence            4567899999998876643 2 12888999887653 33321   122356899999999876654 2  466666643

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.22  E-value=7.8e-09  Score=95.82  Aligned_cols=187  Identities=12%  Similarity=0.169  Sum_probs=139.0

Q ss_pred             CeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE----ccCceeEEEEc------C--------------CeEEEE---e
Q 014977           98 NILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA----FRSDVRSVKLS------R--------------DRIVVV---L  150 (415)
Q Consensus        98 ~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~----~~~~i~~l~~~------~--------------~~~~~~---~  150 (415)
                      ...+++....|     |.+++|+..+++...++.    ..+...+..|.      |              +...++   .
T Consensus         4 ~~~~~A~~~~~-----g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~   78 (541)
T KOG4547|consen    4 ALDYFALSTGD-----GRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTP   78 (541)
T ss_pred             hhheEeecCCC-----CeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecC
Confidence            34556666665     999999999999888876    23444444443      1              122333   5


Q ss_pred             CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCC
Q 014977          151 EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGL  229 (415)
Q Consensus       151 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~  229 (415)
                      .|.|.+|++..++....+.+..+...+.++..+.+-..|. +++.|+.+..|+... ..+.........+.+++.+|||.
T Consensus        79 ~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciy-S~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~  157 (541)
T KOG4547|consen   79 QGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIY-SVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK  157 (541)
T ss_pred             CccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceE-ecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC
Confidence            7899999999999988887655555666666655544554 466788888877655 45666777888899999999999


Q ss_pred             EEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCC-----CCEEE-EEeCCCeEEEEEceeccc
Q 014977          230 LLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPN-----VQWLA-VASDKGTVHIFSLRVRVV  295 (415)
Q Consensus       230 ~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spd-----g~~l~-s~s~dg~i~vwd~~~~~~  295 (415)
                      .|++++.  . |++||+++++.+..|.+  |.++|.+++|-.+     |.++. +...+.-|.+|-++...+
T Consensus       158 ~l~~as~--~-ik~~~~~~kevv~~ftg--h~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~k  224 (541)
T KOG4547|consen  158 ILLTASR--Q-IKVLDIETKEVVITFTG--HGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDK  224 (541)
T ss_pred             EEEeccc--e-EEEEEccCceEEEEecC--CCcceEEEEEEEeccccccceeeeccccccceeEEEEEcccc
Confidence            9999885  4 99999999999999999  8999999999876     56555 445555689998887443

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.21  E-value=2.9e-11  Score=115.55  Aligned_cols=193  Identities=13%  Similarity=0.171  Sum_probs=146.0

Q ss_pred             cCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEc
Q 014977           84 KSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSF  159 (415)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~  159 (415)
                      .+|-..|.+..|+..+..++++++|     ..++||..+++.++.... |.+.|+.++.+.++.+++   .|..|++|.+
T Consensus       187 lgH~naVyca~fDrtg~~Iitgsdd-----~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl  261 (1113)
T KOG0644|consen  187 LGHRNAVYCAIFDRTGRYIITGSDD-----RLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRL  261 (1113)
T ss_pred             HhhhhheeeeeeccccceEeecCcc-----ceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEec
Confidence            4788889999999999999999998     999999999999999988 999999999999988887   6888999999


Q ss_pred             CCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEE----e-cCccceEEEEeCCCCCEEEEE
Q 014977          160 VDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLI----N-AHDSHIACFTLTLDGLLLATA  234 (415)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~----~-~~~~~i~~l~~sp~g~~l~s~  234 (415)
                      .++.++..+.+|...++  +++++|.    + +.+.||++++|+.+.......    . ....-+.++.|-.++.-++++
T Consensus       262 ~~~~pvsvLrghtgavt--aiafsP~----~-sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tg  334 (1113)
T KOG0644|consen  262 PDGAPVSVLRGHTGAVT--AIAFSPR----A-SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTG  334 (1113)
T ss_pred             CCCchHHHHhcccccee--eeccCcc----c-cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccc
Confidence            99999999999998555  4455442    2 356899999999884332221    1 123456778888888899999


Q ss_pred             eCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCC-CEEEEEeCCCeEEEEEceecccCC
Q 014977          235 STRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNV-QWLAVASDKGTVHIFSLRVRVVGE  297 (415)
Q Consensus       235 s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg-~~l~s~s~dg~i~vwd~~~~~~~~  297 (415)
                      +.|+. -..|.+.....        +...+.-+.++.|- .+.+++-.+-.+.+|++.++...+
T Consensus       335 s~d~e-a~n~e~~~l~~--------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H  389 (1113)
T KOG0644|consen  335 SRDGE-ARNHEFEQLAW--------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLH  389 (1113)
T ss_pred             cCCcc-cccchhhHhhh--------hccceEEEeccccccccceeeeeeeEeeeeecccchhhh
Confidence            99998 88886532211        11111122222222 456677778889999999997654

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.20  E-value=6.8e-09  Score=98.87  Aligned_cols=224  Identities=10%  Similarity=0.009  Sum_probs=132.0

Q ss_pred             CCCCCceEEEEEeCCCCEEE---EEe-CC--cEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCC
Q 014977           41 DVDEIELISVSWNQDYGCFA---AGT-SC--GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPT  114 (415)
Q Consensus        41 ~~h~~~V~~l~~sp~g~~la---~g~-d~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~  114 (415)
                      ......+.+-+|+|||+.++   +.. ++  .|.+.++++++......+   ........|+||+..|+.........+-
T Consensus       181 t~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~---~g~~~~p~wSPDG~~Laf~s~~~g~~di  257 (428)
T PRK01029        181 TQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL---QGNQLMPTFSPRKKLLAFISDRYGNPDL  257 (428)
T ss_pred             ccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC---CCCccceEECCCCCEEEEEECCCCCcce
Confidence            33455677889999998532   333 44  466667766543332222   2233457899999666644321111123


Q ss_pred             eEEEEECCCC---CEEEEEEc-cCceeEEEEcCCeEEEE----eCCe--EEEEEcCC-ceeeeEEeccCCCcceEEEecC
Q 014977          115 KVIIWDDHQS---RCIGEFAF-RSDVRSVKLSRDRIVVV----LEHK--IYVYSFVD-LKLLHQIETLANLRGLCCLSHH  183 (415)
Q Consensus       115 ~i~vwd~~~~---~~~~~~~~-~~~i~~l~~~~~~~~~~----~d~~--i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~  183 (415)
                      .+..|++..+   +....... ........|+|||+.++    .++.  |+++++.. +.....+.....  ......++
T Consensus       258 ~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~--~~~~p~wS  335 (428)
T PRK01029        258 FIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYR--NSSCPAWS  335 (428)
T ss_pred             eEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCC--CccceeEC
Confidence            4455776653   33333322 23456789999998776    2453  55555532 222333433322  23445667


Q ss_pred             CCceEEEEeCCccC--eEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeC---CCcEEEEEECCCCcEEEEEecC
Q 014977          184 SSTSVLACPGLQRG--QVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATAST---RGTLIRIFNTVDGTRLQEVRRG  258 (415)
Q Consensus       184 ~~~~~l~~~g~~dg--~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~---dg~~I~vwd~~~~~~~~~~~~~  258 (415)
                      |++..|+++...++  .|.+++..+.....+......+....|+|||+.|+....   ... |+++|+..++......  
T Consensus       336 PDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~-L~~vdl~~g~~~~Lt~--  412 (428)
T PRK01029        336 PDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESE-LYLISLITKKTRKIVI--  412 (428)
T ss_pred             CCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCce-EEEEECCCCCEEEeec--
Confidence            77778877654443  577788777776766655556778999999998775443   245 8899998776544333  


Q ss_pred             CCcccEEEEEeCCCC
Q 014977          259 VDRAEIYSIALSPNV  273 (415)
Q Consensus       259 ~~~~~v~~l~~spdg  273 (415)
                       ..+.+...+|+|-.
T Consensus       413 -~~g~~~~p~Ws~~~  426 (428)
T PRK01029        413 -GSGEKRFPSWGAFP  426 (428)
T ss_pred             -CCCcccCceecCCC
Confidence             33456778888743

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.20  E-value=1.2e-09  Score=107.26  Aligned_cols=136  Identities=14%  Similarity=0.209  Sum_probs=104.2

Q ss_pred             eCCeEEEEEcCCceeeeEEeccCCCc--ceEEEecCCCceEEEEeCCccCeEEEEEcCCcceE-EEecCccceEEEEeCC
Q 014977          150 LEHKIYVYSFVDLKLLHQIETLANLR--GLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIK-LINAHDSHIACFTLTL  226 (415)
Q Consensus       150 ~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~-~~~~~~~~i~~l~~sp  226 (415)
                      .++.+-+||...+.....+.......  ..+-+-..++..++++ |+.-+.|.+|........ .+.+|.+.|.++.++.
T Consensus       107 ~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~-gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~  185 (967)
T KOG0974|consen  107 SRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIAS-GSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSL  185 (967)
T ss_pred             cCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEe-ccccccEEEEeccccCCcceecccCCceEEEEEcc
Confidence            68889999987776665554332211  1122333444556654 778889999876643333 4889999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEEECCCCcEEE-EEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEce
Q 014977          227 DGLLLATASTRGTLIRIFNTVDGTRLQ-EVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR  291 (415)
Q Consensus       227 ~g~~l~s~s~dg~~I~vwd~~~~~~~~-~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~  291 (415)
                      ||+++++.|+|.. +++|++.+.+... ..-+  |.+.|+.+.|.|+  .|++++.|-+.++|+.+
T Consensus       186 dg~~i~s~SdDRs-iRlW~i~s~~~~~~~~fg--HsaRvw~~~~~~n--~i~t~gedctcrvW~~~  246 (967)
T KOG0974|consen  186 DGRYIASVSDDRS-IRLWPIDSREVLGCTGFG--HSARVWACCFLPN--RIITVGEDCTCRVWGVN  246 (967)
T ss_pred             CCcEEEEEecCcc-eeeeecccccccCccccc--ccceeEEEEeccc--eeEEeccceEEEEEecc
Confidence            9999999999999 9999999988765 3334  8999999999998  89999999999999543

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.19  E-value=1.2e-09  Score=96.29  Aligned_cols=215  Identities=13%  Similarity=0.125  Sum_probs=144.2

Q ss_pred             CCceEEEEEeCCCCEEEEEeCCcEEEEEccCCc----eeEEEeccCCCeeEEEEeeeCCe-EEEEecCCCCCCCCCeEEE
Q 014977           44 EIELISVSWNQDYGCFAAGTSCGFRIYNCEPFK----ETFRRDLKSGGFRIVEMLFRCNI-LALVGAGDNSQYPPTKVII  118 (415)
Q Consensus        44 ~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~~~~~~i~v  118 (415)
                      ...|..++.. ||.++++-++|.+.+|..+...    .....   ..+..+..+.-.+.. .++++|+..   .-+.+.+
T Consensus       105 ~~~I~gl~~~-dg~Litc~~sG~l~~~~~k~~d~hss~l~~l---a~g~g~~~~r~~~~~p~Iva~GGke---~~n~lki  177 (412)
T KOG3881|consen  105 TKSIKGLKLA-DGTLITCVSSGNLQVRHDKSGDLHSSKLIKL---ATGPGLYDVRQTDTDPYIVATGGKE---NINELKI  177 (412)
T ss_pred             cccccchhhc-CCEEEEEecCCcEEEEeccCCccccccceee---ecCCceeeeccCCCCCceEecCchh---cccceee
Confidence            3444444433 3444444449999999987322    12221   223444555555544 444556543   1267999


Q ss_pred             EECCCCCEEEEEE----------ccCceeEEEEcCC--eEEEE---eCCeEEEEEcCCc-eeeeEEeccCCCcceEEEec
Q 014977          119 WDDHQSRCIGEFA----------FRSDVRSVKLSRD--RIVVV---LEHKIYVYSFVDL-KLLHQIETLANLRGLCCLSH  182 (415)
Q Consensus       119 wd~~~~~~~~~~~----------~~~~i~~l~~~~~--~~~~~---~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~  182 (415)
                      ||++..+.+..-+          .+-.++++.|-+.  ...++   .-+.+++||.+.+ +++..+....+++..+.+.+
T Consensus       178 wdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p  257 (412)
T KOG3881|consen  178 WDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP  257 (412)
T ss_pred             eecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecC
Confidence            9999887666543          2345678888776  55555   6789999999754 56777777777666555555


Q ss_pred             CCCceEEEEeCCccCeEEEEEcCCcc-eEE-EecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCC
Q 014977          183 HSSTSVLACPGLQRGQVRIEHFGLNM-IKL-INAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVD  260 (415)
Q Consensus       183 ~~~~~~l~~~g~~dg~v~i~~~~~~~-~~~-~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~  260 (415)
                      +  +.++++ |...+.+..++.+... ... +.+-.+.|.+|..+|.+++|++++-|.. +||+|+++.+++....-   
T Consensus       258 ~--gn~Iy~-gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRy-vRIhD~ktrkll~kvYv---  330 (412)
T KOG3881|consen  258 S--GNFIYT-GNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRY-VRIHDIKTRKLLHKVYV---  330 (412)
T ss_pred             C--CcEEEE-ecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeecccee-EEEeecccchhhhhhhh---
Confidence            4  555554 7788888887666544 333 6788899999999999999999999999 99999999777766553   


Q ss_pred             cccEEEEEeCCC
Q 014977          261 RAEIYSIALSPN  272 (415)
Q Consensus       261 ~~~v~~l~~spd  272 (415)
                      .+.+++|.+.++
T Consensus       331 Ks~lt~il~~~~  342 (412)
T KOG3881|consen  331 KSRLTFILLRDD  342 (412)
T ss_pred             hccccEEEecCC
Confidence            345677777654

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.19  E-value=1.2e-08  Score=93.04  Aligned_cols=241  Identities=15%  Similarity=0.102  Sum_probs=160.6

Q ss_pred             CCCceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCC----------CC
Q 014977           43 DEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQ----------YP  112 (415)
Q Consensus        43 h~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~----------~~  112 (415)
                      ..-++..+.|||.|.+|++.....|.+|.......+.+.    ....+..+.|+|++.+|++-...+.          ..
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~----~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~  106 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRF----RHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTS  106 (561)
T ss_pred             cCcchhheeecCcchheehhhccceEEccccchhheeee----ecCCceecccCcccceeeeeccCCccChhhccCCccc
Confidence            455789999999999999999888999998876644432    3445778889999999999877543          24


Q ss_pred             CCeEEEEECCCCCEEEEEEc-cCc--ee-EEEEcCCeEEEE--eCCeEEEEEcCCceee-eEEeccCCCcceEEEecCCC
Q 014977          113 PTKVIIWDDHQSRCIGEFAF-RSD--VR-SVKLSRDRIVVV--LEHKIYVYSFVDLKLL-HQIETLANLRGLCCLSHHSS  185 (415)
Q Consensus       113 ~~~i~vwd~~~~~~~~~~~~-~~~--i~-~l~~~~~~~~~~--~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~  185 (415)
                      ++.+.+||..+|..+..+.. ..+  .. -+.|+-+..+++  ....++|+++ +.... ..+.. ..+..+..++++|.
T Consensus       107 ~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~~~p~~~-lr~~gi~dFsisP~  184 (561)
T COG5354         107 KNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEI-TDNIEEHPFKN-LRPVGILDFSISPE  184 (561)
T ss_pred             cCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEec-CCccccCchhh-ccccceeeEEecCC
Confidence            45799999999999998873 222  33 678999998888  6889999997 32221 11111 11234455555443


Q ss_pred             --ceEEEEe----CCccCeEEEEEcCCcc-eEEEecCccceEEEEeCCCCCEEEEEeC-----------CCcEEEEEECC
Q 014977          186 --TSVLACP----GLQRGQVRIEHFGLNM-IKLINAHDSHIACFTLTLDGLLLATAST-----------RGTLIRIFNTV  247 (415)
Q Consensus       186 --~~~l~~~----g~~dg~v~i~~~~~~~-~~~~~~~~~~i~~l~~sp~g~~l~s~s~-----------dg~~I~vwd~~  247 (415)
                        +..||+-    +..++++++|...... +.+..-....-..+.|++.|++|+.--.           ... ++|+++.
T Consensus       185 ~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesn-Lyl~~~~  263 (561)
T COG5354         185 GNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESN-LYLLRIT  263 (561)
T ss_pred             CCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccce-EEEEeec
Confidence              3334331    2456788887765432 2222212233346889999987654211           134 8888886


Q ss_pred             CCcEEEEEecCCCcccEEEEEeCCCCCEEEEE--eCCCeEEEEEceec
Q 014977          248 DGTRLQEVRRGVDRAEIYSIALSPNVQWLAVA--SDKGTVHIFSLRVR  293 (415)
Q Consensus       248 ~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~--s~dg~i~vwd~~~~  293 (415)
                      ... +.....  ..++|...+|.|.++.+++.  -.+-.+.++|++.+
T Consensus       264 e~~-i~V~~~--~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N  308 (561)
T COG5354         264 ERS-IPVEKD--LKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN  308 (561)
T ss_pred             ccc-cceecc--ccccceeeeecccCCceeEEecccccceeecccccc
Confidence            332 223223  46799999999998877654  46778999998876

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.18  E-value=1.8e-10  Score=118.40  Aligned_cols=188  Identities=13%  Similarity=0.112  Sum_probs=145.3

Q ss_pred             CCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE--ccCceeEEEEcCCeEEEE---eCCeEEEEEcC
Q 014977           86 GGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA--FRSDVRSVKLSRDRIVVV---LEHKIYVYSFV  160 (415)
Q Consensus        86 ~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~--~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~  160 (415)
                      +-..+.+|.-+|...+.++|+.|     |.|++|....++.+..++  ....|+.+.|+.+|....   .||.+.+|...
T Consensus      2207 ~v~~v~r~~sHp~~~~Yltgs~d-----gsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQD-----GSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred             ccCceeeecCCCCCceEEecCCC-----ceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC
Confidence            34456777888888888999988     999999999999888887  457899999999887665   79999999976


Q ss_pred             CceeeeEEeccCCCcceEEEecCCCceEEEEeC--CccCeEEEEEcCCcce--EEEecCccceEEEEeCCCCCEEEEEeC
Q 014977          161 DLKLLHQIETLANLRGLCCLSHHSSTSVLACPG--LQRGQVRIEHFGLNMI--KLINAHDSHIACFTLTLDGLLLATAST  236 (415)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g--~~dg~v~i~~~~~~~~--~~~~~~~~~i~~l~~sp~g~~l~s~s~  236 (415)
                       .+.....+.|..  ....|.+-.  ..++.+|  +.++.+.+|+......  ..-+.|.+.++++++-|..++|++|+.
T Consensus      2282 -pk~~~s~qchnk--~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr 2356 (2439)
T KOG1064|consen 2282 -PKPYTSWQCHNK--ALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGR 2356 (2439)
T ss_pred             -CcceeccccCCc--cccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCC
Confidence             455555566655  444444443  2344444  4677888988654321  122789999999999999999999999


Q ss_pred             CCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977          237 RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       237 dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                      +|. |++||++..+.++.++.           +. ...++++++..|.|+||++....-.
T Consensus      2357 ~G~-v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2357 KGE-VCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIKIWRLSEFGLL 2403 (2439)
T ss_pred             cCc-EEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceEEEEccccchh
Confidence            999 99999988877766653           44 5678999999999999999887533

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.17  E-value=4.1e-10  Score=97.49  Aligned_cols=254  Identities=13%  Similarity=0.176  Sum_probs=160.5

Q ss_pred             CCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCC-----EEEEEE-c------------cCceeEEEEcCCeEE
Q 014977           86 GGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR-----CIGEFA-F------------RSDVRSVKLSRDRIV  147 (415)
Q Consensus        86 ~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~-----~~~~~~-~------------~~~i~~l~~~~~~~~  147 (415)
                      ...-+.++.|.-.|..|++|..+     |.|.++.-....     ....++ |            ...|..+.|.+++..
T Consensus        24 eadiis~vef~~~Ge~LatGdkg-----GRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~   98 (433)
T KOG1354|consen   24 EADIISAVEFDHYGERLATGDKG-----GRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNL   98 (433)
T ss_pred             hhcceeeEEeecccceEeecCCC-----CeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCc
Confidence            34446678899999999999988     999999743221     122222 2            256888999876543


Q ss_pred             ---EE--eCCeEEEEEcCCceeee--------------------EEe--------------ccCCCcceEEEecCCCceE
Q 014977          148 ---VV--LEHKIYVYSFVDLKLLH--------------------QIE--------------TLANLRGLCCLSHHSSTSV  188 (415)
Q Consensus       148 ---~~--~d~~i~iwd~~~~~~~~--------------------~~~--------------~~~~~~~~~~~~~~~~~~~  188 (415)
                         ++  .|.+|++|.+.......                    .+.              .+.+...+..++.+.+...
T Consensus        99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et  178 (433)
T KOG1354|consen   99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKET  178 (433)
T ss_pred             cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccce
Confidence               22  79999999984321110                    010              1122334566777777777


Q ss_pred             EEEeCCccCeEEEEEcCC--cc--eEEEecCc-----cceEEEEeCCCC-CEEEEEeCCCcEEEEEECCCCc------EE
Q 014977          189 LACPGLQRGQVRIEHFGL--NM--IKLINAHD-----SHIACFTLTLDG-LLLATASTRGTLIRIFNTVDGT------RL  252 (415)
Q Consensus       189 l~~~g~~dg~v~i~~~~~--~~--~~~~~~~~-----~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~~------~~  252 (415)
                      ++++  .|=.|.+|....  +.  +..++.+.     .-|++..|+|.. ..++..+..|+ |++-|++...      .+
T Consensus       179 ~lSA--DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGt-IrLcDmR~~aLCd~hsKl  255 (433)
T KOG1354|consen  179 FLSA--DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGT-IRLCDMRQSALCDAHSKL  255 (433)
T ss_pred             Eeec--cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCc-EEEeechhhhhhcchhhh
Confidence            7652  566677787653  22  22333332     358889999954 57778888999 9999998432      11


Q ss_pred             EEEec-CC-------CcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc-cCCCCCCCCCCCCcccccccCCCCCcccC
Q 014977          253 QEVRR-GV-------DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV-VGEDSSSSLSTPSQSTELLNHSSSFDTLI  323 (415)
Q Consensus       253 ~~~~~-~~-------~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (415)
                      ..... +.       --..|.++.|+++|++|++-.. -+|++||+.-.. ..++...                      
T Consensus       256 fEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~v----------------------  312 (433)
T KOG1354|consen  256 FEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPV----------------------  312 (433)
T ss_pred             hccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEee----------------------
Confidence            11111 00       1136889999999999987643 469999995443 2222111                      


Q ss_pred             CCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977          324 SPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~  389 (415)
                                 ..++...|...+..+-.|..|.        |+|+.+ ..+.+|+....+++|.++.
T Consensus       313 -----------h~~lr~kLc~lYEnD~IfdKFe--------c~~sg~~~~v~TGsy~n~frvf~~~~  360 (433)
T KOG1354|consen  313 -----------HEYLRSKLCSLYENDAIFDKFE--------CSWSGNDSYVMTGSYNNVFRVFNLAR  360 (433)
T ss_pred             -----------hHhHHHHHHHHhhccchhheeE--------EEEcCCcceEecccccceEEEecCCC
Confidence                       2234434555666666666665        889987 6777777799999998765

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.17  E-value=9.9e-08  Score=98.34  Aligned_cols=244  Identities=13%  Similarity=0.096  Sum_probs=151.4

Q ss_pred             CCceEEEEEeCCCCEEEEEe--C---CcEEEEEccCCc-eeEEEecc-----CCCeeEEEEeeeCCeEEEEecCCCCCCC
Q 014977           44 EIELISVSWNQDYGCFAAGT--S---CGFRIYNCEPFK-ETFRRDLK-----SGGFRIVEMLFRCNILALVGAGDNSQYP  112 (415)
Q Consensus        44 ~~~V~~l~~sp~g~~la~g~--d---~~v~iw~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~l~s~~~d~~~~  112 (415)
                      ...+...+|.+....+.+..  .   ..|.+....... ......+.     .....++++.|-++...++.+..+    
T Consensus        21 ~~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~----   96 (928)
T PF04762_consen   21 DLPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALAS----   96 (928)
T ss_pred             ccccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECC----
Confidence            34577778877665443333  2   234444333222 11111121     345678888888876554444444    


Q ss_pred             CCeEEEE----ECCCCCEEEEEEccCceeEEEEcCCeEEEE---eCCeEEEEEcC---------------C--------c
Q 014977          113 PTKVIIW----DDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFV---------------D--------L  162 (415)
Q Consensus       113 ~~~i~vw----d~~~~~~~~~~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~---------------~--------~  162 (415)
                       |.|.+.    +..+...-..-.....|.+++|+||+.+++   .++++.+.+-.               .        |
T Consensus        97 -Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWG  175 (928)
T PF04762_consen   97 -GDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWG  175 (928)
T ss_pred             -ceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccC
Confidence             888888    544443333333688999999999998888   46677665420               0        1


Q ss_pred             eeeeEEecc------------C----------CCcceEEEecCCCceEEEEeCC--c---cCeEEEEEcCCcceEEEecC
Q 014977          163 KLLHQIETL------------A----------NLRGLCCLSHHSSTSVLACPGL--Q---RGQVRIEHFGLNMIKLINAH  215 (415)
Q Consensus       163 ~~~~~~~~~------------~----------~~~~~~~~~~~~~~~~l~~~g~--~---dg~v~i~~~~~~~~~~~~~~  215 (415)
                      +...+|.+.            .          .......++|-+||.++|++.-  .   -..+++|++.+.....-..-
T Consensus       176 kKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v  255 (928)
T PF04762_consen  176 KKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPV  255 (928)
T ss_pred             cccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccC
Confidence            111122110            0          1114567889999999987543  2   25788899987655444444


Q ss_pred             ccceEEEEeCCCCCEEEEEeC--CCcEEEEEECCCCcEEEEEecC--CCcccEEEEEeCCCCCEEEEEeCCCeEEEEEce
Q 014977          216 DSHIACFTLTLDGLLLATAST--RGTLIRIFNTVDGTRLQEVRRG--VDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR  291 (415)
Q Consensus       216 ~~~i~~l~~sp~g~~l~s~s~--dg~~I~vwd~~~~~~~~~~~~~--~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~  291 (415)
                      .+--.+++|.|.|++||+...  +...|.+|. ++|-.-..|.-.  .....|..|.|++|+..||..-.|. |.+|-..
T Consensus       256 ~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~  333 (928)
T PF04762_consen  256 DGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRS  333 (928)
T ss_pred             CCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEee
Confidence            444457899999999998765  222377887 466555555432  2456899999999999999988766 9999887


Q ss_pred             ecc
Q 014977          292 VRV  294 (415)
Q Consensus       292 ~~~  294 (415)
                      +..
T Consensus       334 NYH  336 (928)
T PF04762_consen  334 NYH  336 (928)
T ss_pred             CCE
Confidence            653

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.16  E-value=8.7e-10  Score=99.64  Aligned_cols=199  Identities=13%  Similarity=0.081  Sum_probs=139.7

Q ss_pred             ccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE--ccCceeEEEEcCC---eEEEE--eCCeEE
Q 014977           83 LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA--FRSDVRSVKLSRD---RIVVV--LEHKIY  155 (415)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~--~~~~i~~l~~~~~---~~~~~--~d~~i~  155 (415)
                      |..|...+..+.|...+..++++++|     ..|.+||+..++....+.  |...|....|-|.   ..++.  .||.++
T Consensus       138 L~~H~GcVntV~FN~~Gd~l~SgSDD-----~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr  212 (559)
T KOG1334|consen  138 LNKHKGCVNTVHFNQRGDVLASGSDD-----LQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR  212 (559)
T ss_pred             ccCCCCccceeeecccCceeeccCcc-----ceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence            45788888899999999999999998     999999999998887776  7777777677663   33333  789998


Q ss_pred             EEEcC-Ccee--eeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcC-Ccc---eEEEecCcc---ceEEEEeC
Q 014977          156 VYSFV-DLKL--LHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG-LNM---IKLINAHDS---HIACFTLT  225 (415)
Q Consensus       156 iwd~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~-~~~---~~~~~~~~~---~i~~l~~s  225 (415)
                      +=.+. ++.+  ...+..|..++..+++.+.....++  +++.|+.+.-.+++ ..+   ...-..+..   ...+++.+
T Consensus       213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~--S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~  290 (559)
T KOG1334|consen  213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFL--SCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVD  290 (559)
T ss_pred             eeeeccccceecceecccccCccceeeecCCCCCccc--ccccccceeeeeeccCCccceeeeeccCCccceeeeeEecC
Confidence            87763 3333  3345667777777777776555444  46688888754333 322   222233333   56788999


Q ss_pred             CCCC-EEEEEeCCCcEEEEEECCCCc------EEEEEecC----CCcccEEEEEeCCCCCEEEEEeCCCeEEEEE
Q 014977          226 LDGL-LLATASTRGTLIRIFNTVDGT------RLQEVRRG----VDRAEIYSIALSPNVQWLAVASDKGTVHIFS  289 (415)
Q Consensus       226 p~g~-~l~s~s~dg~~I~vwd~~~~~------~~~~~~~~----~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd  289 (415)
                      |... ++++++.|.. +++||.+.-.      .+..+..+    .....|++++|+.++.-|.++..|-.|++|.
T Consensus       291 P~nt~~faVgG~dqf-~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~  364 (559)
T KOG1334|consen  291 PRNTNEFAVGGSDQF-ARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFN  364 (559)
T ss_pred             CCCccccccCChhhh-hhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEec
Confidence            8665 7999999999 9999986432      12222211    1345799999998887777777788899993

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.13  E-value=8.2e-09  Score=89.63  Aligned_cols=249  Identities=11%  Similarity=0.119  Sum_probs=175.3

Q ss_pred             CCCCCccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCC
Q 014977           33 GHPQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQY  111 (415)
Q Consensus        33 ~~~~~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~  111 (415)
                      ..-+.....||.+.|+....-|...-+.+.+ |.+++||--....+......+.....+.++.+......|+.+-..   
T Consensus        13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~n---   89 (404)
T KOG1409|consen   13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDN---   89 (404)
T ss_pred             chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEec---
Confidence            3335566889999999999999888888888 999999976554443333334567778889999988888877766   


Q ss_pred             CCCeEEEEECCC----CCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecC
Q 014977          112 PPTKVIIWDDHQ----SRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHH  183 (415)
Q Consensus       112 ~~~~i~vwd~~~----~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  183 (415)
                        |++.-+.+..    ...++.+. |...+..+-|+.....++   .|..+.---.+.+..+..+.....   ..++..+
T Consensus        90 --gtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~---~t~~~~d  164 (404)
T KOG1409|consen   90 --GTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETP---ASALQFD  164 (404)
T ss_pred             --ceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeecc---CCCCcee
Confidence              8888876533    23333333 889999999987777666   344443333344444433321111   1111111


Q ss_pred             CCceEEEEeCCccCeEEE---EEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcE-EEEEecCC
Q 014977          184 SSTSVLACPGLQRGQVRI---EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR-LQEVRRGV  259 (415)
Q Consensus       184 ~~~~~l~~~g~~dg~v~i---~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~-~~~~~~~~  259 (415)
                      -.   .++.|...|.|.+   .......+..+.+|.+.+.+++|.+...+|.+|..|.. +.+||+--.+- ..++.+  
T Consensus       165 ~~---~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~-vi~wdigg~~g~~~el~g--  238 (404)
T KOG1409|consen  165 AL---YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHS-VIMWDIGGRKGTAYELQG--  238 (404)
T ss_pred             eE---EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCc-eEEEeccCCcceeeeecc--
Confidence            11   3445767777665   44555778889999999999999999999999999999 99999965443 334555  


Q ss_pred             CcccEEEEEeCCCCCEEEEEeCCCeEEEEEceeccc
Q 014977          260 DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV  295 (415)
Q Consensus       260 ~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~  295 (415)
                      |...|..+...+--+.|.+++.||.|.+|+.+....
T Consensus       239 h~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~  274 (404)
T KOG1409|consen  239 HNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRV  274 (404)
T ss_pred             chhhhhhhhhhhhheeeeeccCCCeEEEEeccceee
Confidence            777888888888888999999999999999987653

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.12  E-value=3e-08  Score=97.67  Aligned_cols=194  Identities=10%  Similarity=0.078  Sum_probs=142.4

Q ss_pred             CCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeE---EEEeeeCCeEEEEecCCCCCCCCCeEEE
Q 014977           43 DEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRI---VEMLFRCNILALVGAGDNSQYPPTKVII  118 (415)
Q Consensus        43 h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~s~~~d~~~~~~~i~v  118 (415)
                      -.+.|....+.-+...++.+. ++.+.+|+......... .........   .-+-++++...++++..-     +.|.+
T Consensus        86 ~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~-i~~~er~~l~~~~~~g~s~~~~~i~~gsv~-----~~iiv  159 (967)
T KOG0974|consen   86 FSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSK-IQSDERCTLYSSLIIGDSAEELYIASGSVF-----GEIIV  159 (967)
T ss_pred             ccccccccchhhhcceEEEEEcCceEEEEecccCceehh-cCCCceEEEEeEEEEeccCcEEEEEecccc-----ccEEE
Confidence            344555566666677788777 99999999876433222 211111111   123356677888888776     99999


Q ss_pred             EECCCC-CEEEEEEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeee-EEeccCCCcceEEEecCCCceEEEEeC
Q 014977          119 WDDHQS-RCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLH-QIETLANLRGLCCLSHHSSTSVLACPG  193 (415)
Q Consensus       119 wd~~~~-~~~~~~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~g  193 (415)
                      |+.... ..++...|.+.|.++.++-||.+++   .|..+++|++++.+... ..-+|...+.-+++.++    .+++ +
T Consensus       160 W~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n----~i~t-~  234 (967)
T KOG0974|consen  160 WKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN----RIIT-V  234 (967)
T ss_pred             EeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc----eeEE-e
Confidence            997633 3443444999999999999999998   79999999999987765 44566664444444443    4554 6


Q ss_pred             CccCeEEEEEcCCcceEEEecCc-cceEEEEeCCCCCEEEEEeCCCcEEEEEECCC
Q 014977          194 LQRGQVRIEHFGLNMIKLINAHD-SHIACFTLTLDGLLLATASTRGTLIRIFNTVD  248 (415)
Q Consensus       194 ~~dg~v~i~~~~~~~~~~~~~~~-~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~  248 (415)
                      +.|-+.++|..+......+..|. ..|..++..++...+++++.|+. +++||+..
T Consensus       235 gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~-lk~~~l~~  289 (967)
T KOG0974|consen  235 GEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDST-LKLWDLNG  289 (967)
T ss_pred             ccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcc-hhhhhhhc
Confidence            69999999999988888888885 56899999999999999999999 99999753

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.12  E-value=1.1e-08  Score=87.15  Aligned_cols=219  Identities=16%  Similarity=0.152  Sum_probs=140.2

Q ss_pred             CcEEEEEccCCceeEEEec-cCCCeeEEEEeeeC---CeE-EEEecCCCCCCCCCeEEEEECCCCCEEEEEEc-------
Q 014977           65 CGFRIYNCEPFKETFRRDL-KSGGFRIVEMLFRC---NIL-ALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAF-------  132 (415)
Q Consensus        65 ~~v~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~-~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~-------  132 (415)
                      |.+.+|+++..+......+ ......+..|.|.-   ++. .++-+...     |.|.++..........++.       
T Consensus        46 Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~-----G~i~~~r~~~~~ss~~L~~ls~~ki~  120 (339)
T KOG0280|consen   46 GKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHAR-----GQIQLYRNDEDESSVHLRGLSSKKIS  120 (339)
T ss_pred             cceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeecccc-----ceEEEEeeccceeeeeecccchhhhh
Confidence            4577888875433221111 12334455555542   232 33333333     8899987554443333331       


Q ss_pred             cCceeEEEEcCCeEEEE---eCCeEEEEEcCCcee--eeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCc
Q 014977          133 RSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKL--LHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN  207 (415)
Q Consensus       133 ~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~  207 (415)
                      .....++.|++.+..++   .+|.+.+-+......  ++.++.|.-+.....+...  ..-++++|+.|+.+..|+.+..
T Consensus       121 ~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~--~pnlvytGgDD~~l~~~D~R~p  198 (339)
T KOG0280|consen  121 VVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDK--EPNLVYTGGDDGSLSCWDIRIP  198 (339)
T ss_pred             heeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccC--CCceEEecCCCceEEEEEecCC
Confidence            11245677877766665   577777555444433  3367777776665555543  3346778999999999998832


Q ss_pred             c---eEEEecCccceEEEEeCC-CCCEEEEEeCCCcEEEEEECC-CCcEEEEEecCCCcccEEEEEeCCC--CCEEEEEe
Q 014977          208 M---IKLINAHDSHIACFTLTL-DGLLLATASTRGTLIRIFNTV-DGTRLQEVRRGVDRAEIYSIALSPN--VQWLAVAS  280 (415)
Q Consensus       208 ~---~~~~~~~~~~i~~l~~sp-~g~~l~s~s~dg~~I~vwd~~-~~~~~~~~~~~~~~~~v~~l~~spd--g~~l~s~s  280 (415)
                      .   -+..+.|...|.+|.-+| .+.+|++|+.|.. |++||.+ -++++..-.   ..+.|+.+.++|.  ++.|+++-
T Consensus       199 ~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~-i~~~DtRnm~kPl~~~~---v~GGVWRi~~~p~~~~~lL~~CM  274 (339)
T KOG0280|consen  199 KTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC-IRVLDTRNMGKPLFKAK---VGGGVWRIKHHPEIFHRLLAACM  274 (339)
T ss_pred             cceeeecceeeecceEEEecCCCCCceEEEeccccc-eeeeehhcccCccccCc---cccceEEEEecchhhhHHHHHHH
Confidence            2   223567889999998886 5779999999999 9999998 466665444   4578999999994  44566777


Q ss_pred             CCCeEEEEEceeccc
Q 014977          281 DKGTVHIFSLRVRVV  295 (415)
Q Consensus       281 ~dg~i~vwd~~~~~~  295 (415)
                      ..| .+|-+.+.+..
T Consensus       275 h~G-~ki~~~~~~~~  288 (339)
T KOG0280|consen  275 HNG-AKILDSSDKVL  288 (339)
T ss_pred             hcC-ceEEEeccccc
Confidence            777 78888877653

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.12  E-value=5.3e-07  Score=93.08  Aligned_cols=311  Identities=15%  Similarity=0.133  Sum_probs=182.8

Q ss_pred             CCCCceEEEEEeCCCCEEEEEe-CCcEEEE----EccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977           42 VDEIELISVSWNQDYGCFAAGT-SCGFRIY----NCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (415)
Q Consensus        42 ~h~~~V~~l~~sp~g~~la~g~-d~~v~iw----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i  116 (415)
                      ...+.|.++.|-++...++++. +|.|.+.    +.+........   .-..++.++.|+||...++-...+     ++|
T Consensus        73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG---~vd~GI~a~~WSPD~Ella~vT~~-----~~l  144 (928)
T PF04762_consen   73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVG---SVDSGILAASWSPDEELLALVTGE-----GNL  144 (928)
T ss_pred             CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEE---EEcCcEEEEEECCCcCEEEEEeCC-----CEE
Confidence            4457899999999998888888 9999888    44433322222   345678999999998666655444     666


Q ss_pred             EEEECCCCCEEE------------------------EEE-------------------------ccCceeEEEEcCCeEE
Q 014977          117 IIWDDHQSRCIG------------------------EFA-------------------------FRSDVRSVKLSRDRIV  147 (415)
Q Consensus       117 ~vwd~~~~~~~~------------------------~~~-------------------------~~~~i~~l~~~~~~~~  147 (415)
                      .+.. .+...+.                        +|.                         ....-..|+|-.||.+
T Consensus       145 ~~mt-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~y  223 (928)
T PF04762_consen  145 LLMT-RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEY  223 (928)
T ss_pred             EEEe-ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcE
Confidence            6654 1111111                        110                         1123456889999999


Q ss_pred             EE-------eC--CeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccC--eEEEEEcCCcceEEEe---
Q 014977          148 VV-------LE--HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRG--QVRIEHFGLNMIKLIN---  213 (415)
Q Consensus       148 ~~-------~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg--~v~i~~~~~~~~~~~~---  213 (415)
                      ++       .+  ..++||+- .|+...+-+.-..  ---+++|.|.|.+||++-...+  .|.++..++-.-..+.   
T Consensus       224 FAVss~~~~~~~~R~iRVy~R-eG~L~stSE~v~g--Le~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~  300 (928)
T PF04762_consen  224 FAVSSVEPETGSRRVIRVYSR-EGELQSTSEPVDG--LEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRF  300 (928)
T ss_pred             EEEEEEEcCCCceeEEEEECC-CceEEeccccCCC--ccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCC
Confidence            88       12  57999994 4665444332222  2346777788888887654333  3444777775544443   


Q ss_pred             -cCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCc--EEEEEecCCCcccEEEEEeCCCC-CEEEEEeCCCeEEEEE
Q 014977          214 -AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT--RLQEVRRGVDRAEIYSIALSPNV-QWLAVASDKGTVHIFS  289 (415)
Q Consensus       214 -~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~--~~~~~~~~~~~~~v~~l~~spdg-~~l~s~s~dg~i~vwd  289 (415)
                       .....|..+.|++|+..||..-.|.  |.+|-..+-.  ..+++.-. ....+..+.|+|.. ..|...+.+|.+..++
T Consensus       301 ~~~~~~v~~l~Wn~ds~iLAv~~~~~--vqLWt~~NYHWYLKqei~~~-~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~  377 (928)
T PF04762_consen  301 DPEEEKVIELAWNSDSEILAVWLEDR--VQLWTRSNYHWYLKQEIRFS-SSESVNFVKWDPEKPLRLHVLTSNGQYEIYD  377 (928)
T ss_pred             CCCCceeeEEEECCCCCEEEEEecCC--ceEEEeeCCEEEEEEEEEcc-CCCCCCceEECCCCCCEEEEEecCCcEEEEE
Confidence             3456789999999999999977554  9999876654  23333321 22345569999954 4577777777777666


Q ss_pred             ceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCccccc-ccccCc-ccccccceEEEEeCCCceEEEEe
Q 014977          290 LRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFM-RGVLPK-YFSSEWSFAQFHIPEVTHFIAAF  367 (415)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  367 (415)
                      +.-.-........       .|.        -...+-+|.+.  .+..+ ...+|. +     ....+.++. .+..++|
T Consensus       378 ~~~~v~~s~~~~~-------~D~--------g~vaVIDG~~l--llTpf~~a~VPPPM-----s~~~l~~~~-~v~~vaf  434 (928)
T PF04762_consen  378 FAWDVSRSPGSSP-------NDN--------GTVAVIDGNKL--LLTPFRRAVVPPPM-----SSYELELPS-PVNDVAF  434 (928)
T ss_pred             EEEEEEecCCCCc-------cCc--------eEEEEEeCCeE--EEecccccCCCchH-----hceEEcCCC-CcEEEEE
Confidence            5543321100000       000        00000111110  00111 112221 1     112444543 5667788


Q ss_pred             cCC-CEEEEEEeCCcEEEEEEecC
Q 014977          368 GSQ-NTVVIVSMDGSFYRCSFDPV  390 (415)
Q Consensus       368 ~~~-~~i~~~~~dg~~~~~~~~~~  390 (415)
                      +++ ..+++..+||.+++|..+..
T Consensus       435 ~~~~~~~avl~~d~~l~~~~~~~~  458 (928)
T PF04762_consen  435 SPSNSRFAVLTSDGSLSIYEWDLK  458 (928)
T ss_pred             eCCCCeEEEEECCCCEEEEEecCC
Confidence            887 66999999999999997653

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.12  E-value=1.6e-07  Score=98.58  Aligned_cols=239  Identities=11%  Similarity=0.049  Sum_probs=146.9

Q ss_pred             EEEEEeCCC-CEEEEEe-CCcEEEEEccCCceeEEEeccCC------------CeeEEEEeeeCCeE-EEEecCCCCCCC
Q 014977           48 ISVSWNQDY-GCFAAGT-SCGFRIYNCEPFKETFRRDLKSG------------GFRIVEMLFRCNIL-ALVGAGDNSQYP  112 (415)
Q Consensus        48 ~~l~~sp~g-~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~-~l~s~~~d~~~~  112 (415)
                      ..+++++++ .++++-. ++.|++||.+.. ......-.+.            -.....+++++++. ++++....    
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n----  645 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN-FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN----  645 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCC-EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC----
Confidence            567888764 4555544 888999998643 2211110000            01235567776543 44444333    


Q ss_pred             CCeEEEEECCCCCEEEEEEc------------------cCceeEEEEcC-CeEEEE---eCCeEEEEEcCCceeeeEEec
Q 014977          113 PTKVIIWDDHQSRCIGEFAF------------------RSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDLKLLHQIET  170 (415)
Q Consensus       113 ~~~i~vwd~~~~~~~~~~~~------------------~~~i~~l~~~~-~~~~~~---~d~~i~iwd~~~~~~~~~~~~  170 (415)
                       +.|+++|+.++. +.++..                  -....+++++| ++.+.+   .++.|++||..++... .+.+
T Consensus       646 -~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G  722 (1057)
T PLN02919        646 -HALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSG  722 (1057)
T ss_pred             -ceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEec
Confidence             789999977654 333310                  11345789998 555544   4688999998776543 2211


Q ss_pred             cC-------------CCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEec----------------------C
Q 014977          171 LA-------------NLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINA----------------------H  215 (415)
Q Consensus       171 ~~-------------~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~----------------------~  215 (415)
                      ..             .......+++++++..|+++...++.|++|+........+.+                      .
T Consensus       723 ~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~  802 (1057)
T PLN02919        723 DGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVL  802 (1057)
T ss_pred             CCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhh
Confidence            10             001223455666666555556678899998865433222110                      0


Q ss_pred             ccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCC-----------CcccEEEEEeCCCCCEEEEEeCCCe
Q 014977          216 DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGV-----------DRAEIYSIALSPNVQWLAVASDKGT  284 (415)
Q Consensus       216 ~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~-----------~~~~v~~l~~spdg~~l~s~s~dg~  284 (415)
                      -.....++++++|.++++-..++. |++||..++........+.           .-.....|+++++|+++++-+.++.
T Consensus       803 l~~P~Gvavd~dG~LYVADs~N~r-IrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~  881 (1057)
T PLN02919        803 LQHPLGVLCAKDGQIYVADSYNHK-IKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSL  881 (1057)
T ss_pred             ccCCceeeEeCCCcEEEEECCCCE-EEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCE
Confidence            112358899999998888888888 9999998776553322110           1124678999999999888889999


Q ss_pred             EEEEEceeccc
Q 014977          285 VHIFSLRVRVV  295 (415)
Q Consensus       285 i~vwd~~~~~~  295 (415)
                      |++||+++++.
T Consensus       882 Irvid~~~~~~  892 (1057)
T PLN02919        882 IRYLDLNKGEA  892 (1057)
T ss_pred             EEEEECCCCcc
Confidence            99999988764

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.10  E-value=7e-07  Score=81.42  Aligned_cols=220  Identities=12%  Similarity=0.063  Sum_probs=127.7

Q ss_pred             CcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCC-----CCCCCCeEEEEECCCCCEEEEEEccCc----
Q 014977           65 CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDN-----SQYPPTKVIIWDDHQSRCIGEFAFRSD----  135 (415)
Q Consensus        65 ~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----~~~~~~~i~vwd~~~~~~~~~~~~~~~----  135 (415)
                      +.|.+.|.++.+.+-....  +...- .+ .++++..+..+..-     ..-.+..|.+||..+.+.+.++.....    
T Consensus        27 ~~v~ViD~~~~~v~g~i~~--G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~  102 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDG--GFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL  102 (352)
T ss_pred             ceEEEEECCCCEEEEEEEc--cCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh
Confidence            7899999988665444332  22111 13 67776544433320     000138999999999999999884333    


Q ss_pred             ----eeEEEEcCCeEEEE----e-CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEE--EEc
Q 014977          136 ----VRSVKLSRDRIVVV----L-EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI--EHF  204 (415)
Q Consensus       136 ----i~~l~~~~~~~~~~----~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i--~~~  204 (415)
                          ...++++|||+++.    . +..|.+.|+.+++.+.++.....   ...+........+.+   .||....  .+.
T Consensus       103 ~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~---~~vy~t~e~~~~~~~---~Dg~~~~v~~d~  176 (352)
T TIGR02658       103 VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC---YHIFPTANDTFFMHC---RDGSLAKVGYGT  176 (352)
T ss_pred             ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC---cEEEEecCCccEEEe---ecCceEEEEecC
Confidence                33789999998776    3 78999999999999998876431   222222222222222   2443332  222


Q ss_pred             CCcc-eEE---EecCccce-EEEEeCC-CCCEEEEEeCCCcEEEEEECCCC-----cEEEEEec-----CCCcccEEEEE
Q 014977          205 GLNM-IKL---INAHDSHI-ACFTLTL-DGLLLATASTRGTLIRIFNTVDG-----TRLQEVRR-----GVDRAEIYSIA  268 (415)
Q Consensus       205 ~~~~-~~~---~~~~~~~i-~~l~~sp-~g~~l~s~s~dg~~I~vwd~~~~-----~~~~~~~~-----~~~~~~v~~l~  268 (415)
                      +++. ...   +.....++ ..-.|.+ +|+++....+ |. |.+.|+...     +....+..     +-..+.+.-++
T Consensus       177 ~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~-V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia  254 (352)
T TIGR02658       177 KGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GK-IFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVA  254 (352)
T ss_pred             CCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-Ce-EEEEecCCCcceecceeeeccccccccccCCCcceeEE
Confidence            2221 111   11101111 0013455 8888887777 88 999996433     33322221     11233445599


Q ss_pred             eCCCCCEEEEEeC----------CCeEEEEEceecccC
Q 014977          269 LSPNVQWLAVASD----------KGTVHIFSLRVRVVG  296 (415)
Q Consensus       269 ~spdg~~l~s~s~----------dg~i~vwd~~~~~~~  296 (415)
                      ++++++.|++...          .+.|.++|..+++..
T Consensus       255 ~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi  292 (352)
T TIGR02658       255 YHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRL  292 (352)
T ss_pred             EcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEE
Confidence            9999998887542          247999998888753

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.09  E-value=1.2e-07  Score=89.58  Aligned_cols=218  Identities=16%  Similarity=0.102  Sum_probs=125.7

Q ss_pred             CCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEE-EeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEcc
Q 014977           56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVE-MLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFR  133 (415)
Q Consensus        56 g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~  133 (415)
                      +..+++++ ++.+..+|.++++......+.. .  +.. ... .++.+++.. .+     +.|..||.++|+.+.++...
T Consensus       105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~--~~~~p~v-~~~~v~v~~-~~-----g~l~a~d~~tG~~~W~~~~~  174 (377)
T TIGR03300       105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSS-E--VLSPPLV-ANGLVVVRT-ND-----GRLTALDAATGERLWTYSRV  174 (377)
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEeeeeccCc-e--eecCCEE-ECCEEEEEC-CC-----CeEEEEEcCCCceeeEEccC
Confidence            44566666 8888888888777666554421 1  111 111 234444443 33     89999999999998887743


Q ss_pred             Ccee------EEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCC----c-ceE----EEecCCCceEEEEeCCcc
Q 014977          134 SDVR------SVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANL----R-GLC----CLSHHSSTSVLACPGLQR  196 (415)
Q Consensus       134 ~~i~------~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~----~-~~~----~~~~~~~~~~l~~~g~~d  196 (415)
                      ....      ...+. ++.+++  .++.++.+|.++++.+.........    . ...    ..... ++ .+.+ ++.+
T Consensus       175 ~~~~~~~~~~sp~~~-~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~-~~-~vy~-~~~~  250 (377)
T TIGR03300       175 TPALTLRGSASPVIA-DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVD-GG-QVYA-VSYQ  250 (377)
T ss_pred             CCceeecCCCCCEEE-CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEE-CC-EEEE-EEcC
Confidence            3221      11222 234444  5789999999999876554321100    0 000    00111 22 3333 3467


Q ss_pred             CeEEEEEc-CCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCE
Q 014977          197 GQVRIEHF-GLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQW  275 (415)
Q Consensus       197 g~v~i~~~-~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~  275 (415)
                      |.++.++. +++.+.... .. ......  ..+..++.++.+|. |..+|..+|+.+...... ..........  .+..
T Consensus       251 g~l~a~d~~tG~~~W~~~-~~-~~~~p~--~~~~~vyv~~~~G~-l~~~d~~tG~~~W~~~~~-~~~~~ssp~i--~g~~  322 (377)
T TIGR03300       251 GRVAALDLRSGRVLWKRD-AS-SYQGPA--VDDNRLYVTDADGV-VVALDRRSGSELWKNDEL-KYRQLTAPAV--VGGY  322 (377)
T ss_pred             CEEEEEECCCCcEEEeec-cC-CccCce--EeCCEEEEECCCCe-EEEEECCCCcEEEccccc-cCCccccCEE--ECCE
Confidence            88887665 344433332 11 111122  24567888888999 999999999887665321 1111122222  4668


Q ss_pred             EEEEeCCCeEEEEEceeccc
Q 014977          276 LAVASDKGTVHIFSLRVRVV  295 (415)
Q Consensus       276 l~s~s~dg~i~vwd~~~~~~  295 (415)
                      |++++.+|.|+++|.++++.
T Consensus       323 l~~~~~~G~l~~~d~~tG~~  342 (377)
T TIGR03300       323 LVVGDFEGYLHWLSREDGSF  342 (377)
T ss_pred             EEEEeCCCEEEEEECCCCCE
Confidence            88999999999999888874

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.09  E-value=8.5e-09  Score=95.19  Aligned_cols=175  Identities=11%  Similarity=0.203  Sum_probs=138.2

Q ss_pred             CeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccC---------CCcceEEE
Q 014977          114 TKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLA---------NLRGLCCL  180 (415)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~---------~~~~~~~~  180 (415)
                      ..|.-++++.|..+..+. ..+.++++.+++-..+++   .+|.|..||.++...+..+....         ....+.++
T Consensus       155 ~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal  234 (703)
T KOG2321|consen  155 SEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTAL  234 (703)
T ss_pred             cceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEE
Confidence            678888999999999998 458999999999777777   59999999998877766664332         22357888


Q ss_pred             ecCCCceEEEEeCCccCeEEEEEcCCcceEEEecC--ccceEEEEeCCCC--CEEEEEeCCCcEEEEEECCCCcEEEEEe
Q 014977          181 SHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAH--DSHIACFTLTLDG--LLLATASTRGTLIRIFNTVDGTRLQEVR  256 (415)
Q Consensus       181 ~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~--~~~i~~l~~sp~g--~~l~s~s~dg~~I~vwd~~~~~~~~~~~  256 (415)
                      .+..++..+++ |..+|.|.|++++.........|  .-+|..+.|.+.+  ..|++  .|...++|||-.+|+....+.
T Consensus       235 ~F~d~gL~~aV-Gts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S--~Dk~~~kiWd~~~Gk~~asiE  311 (703)
T KOG2321|consen  235 KFRDDGLHVAV-GTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVS--MDKRILKIWDECTGKPMASIE  311 (703)
T ss_pred             EecCCceeEEe-eccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEe--cchHHhhhcccccCCceeecc
Confidence            88888888876 88999999988887666666666  5578899998763  34444  343339999999999988777


Q ss_pred             cCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977          257 RGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (415)
Q Consensus       257 ~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  294 (415)
                      .   ...++.+++-|++.+++++-.+..+..|=+..-.
T Consensus       312 p---t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LG  346 (703)
T KOG2321|consen  312 P---TSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLG  346 (703)
T ss_pred             c---cCCcCceeeecCCceEEEecCCCcceeEEccccC
Confidence            4   4569999999999999999999888888776544

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.08  E-value=1.9e-08  Score=87.37  Aligned_cols=196  Identities=13%  Similarity=0.201  Sum_probs=134.9

Q ss_pred             CCceEEEEEeCCCCEEEEEe-CCcEEEEEccC-C-ceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEE
Q 014977           44 EIELISVSWNQDYGCFAAGT-SCGFRIYNCEP-F-KETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD  120 (415)
Q Consensus        44 ~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd  120 (415)
                      ..++++++++++.+.|++|- .|++.-+.+.. . +....+....|...+..+.|+-....+++.+.|     ..+.---
T Consensus        68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~d-----k~~~~hc  142 (404)
T KOG1409|consen   68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKD-----KQFAWHC  142 (404)
T ss_pred             CCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccc-----cceEEEe
Confidence            56789999999999999999 88888777642 1 122222234678888889999888888888886     4443333


Q ss_pred             CCCCCEEEEEEccCceeEEEEcCCeEEEE-eCCeEEEEEc--CCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccC
Q 014977          121 DHQSRCIGEFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSF--VDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRG  197 (415)
Q Consensus       121 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~d~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg  197 (415)
                      .+.+..+..+.......++.+.-.-.++. ..+.|.+..+  ..-..+..+.+|..  .+.++.|++....+. +|..|.
T Consensus       143 ~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~--~~~~l~Wd~~~~~Lf-Sg~~d~  219 (404)
T KOG1409|consen  143 TESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTG--EVTCLKWDPGQRLLF-SGASDH  219 (404)
T ss_pred             eccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCccc--ceEEEEEcCCCcEEE-eccccC
Confidence            45555555554333333333322211121 3455555444  44566777777777  566677776665654 588999


Q ss_pred             eEEEEEcCCcc--eEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCC
Q 014977          198 QVRIEHFGLNM--IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVD  248 (415)
Q Consensus       198 ~v~i~~~~~~~--~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~  248 (415)
                      .+.+|+..+..  ...+.+|...|..+..-+--+.|.+++.||. |.+||++.
T Consensus       220 ~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~-i~~w~mn~  271 (404)
T KOG1409|consen  220 SVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGG-IVVWNMNV  271 (404)
T ss_pred             ceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCe-EEEEeccc
Confidence            99999988754  4556789999999988888889999999999 99999853

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.08  E-value=6.2e-08  Score=87.73  Aligned_cols=142  Identities=10%  Similarity=-0.066  Sum_probs=107.4

Q ss_pred             cCCCCCCceEEEEEeCCCCEEEEEe-CC-cEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977           39 FSDVDEIELISVSWNQDYGCFAAGT-SC-GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i  116 (415)
                      ..-+|...|.-..+.-+++-++.|. || .+-||+.++.+...   +...-..+.++..+++++.++.+.+.     ..|
T Consensus       354 iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr---~e~~lg~I~av~vs~dGK~~vvaNdr-----~el  425 (668)
T COG4946         354 IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR---IEKDLGNIEAVKVSPDGKKVVVANDR-----FEL  425 (668)
T ss_pred             EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE---eeCCccceEEEEEcCCCcEEEEEcCc-----eEE
Confidence            3467888899999999999999999 77 89999999865322   22555678889999999988888776     899


Q ss_pred             EEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE-------eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceE
Q 014977          117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-------LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSV  188 (415)
Q Consensus       117 ~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~-------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (415)
                      .+.|+.+|.....-+ ..+-|+.+.|+|++++++       ....|+++|+..++....-.. ..  .-.+-++++++++
T Consensus       426 ~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~-ta--~DfsPaFD~d~ry  502 (668)
T COG4946         426 WVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP-TA--YDFSPAFDPDGRY  502 (668)
T ss_pred             EEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCC-cc--cccCcccCCCCcE
Confidence            999999998654433 578899999999999999       356899999988776544322 21  2334455666666


Q ss_pred             EEE
Q 014977          189 LAC  191 (415)
Q Consensus       189 l~~  191 (415)
                      |.+
T Consensus       503 LYf  505 (668)
T COG4946         503 LYF  505 (668)
T ss_pred             EEE
Confidence            654

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.07  E-value=1.9e-07  Score=79.71  Aligned_cols=229  Identities=11%  Similarity=0.113  Sum_probs=134.0

Q ss_pred             EEEEeCCCCEEEEEeCCcEEEEEccCC-ceeE-EEe-ccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCC
Q 014977           49 SVSWNQDYGCFAAGTSCGFRIYNCEPF-KETF-RRD-LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR  125 (415)
Q Consensus        49 ~l~~sp~g~~la~g~d~~v~iw~~~~~-~~~~-~~~-~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~  125 (415)
                      .++.+.+|++||+-.|..|.|-..... ..+. +.. .++..-.-..++|++|+.+||.+...     |+|+++|+.. .
T Consensus         2 ~~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~-----G~i~vfdl~g-~   75 (282)
T PF15492_consen    2 HLALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAEST-----GTIRVFDLMG-S   75 (282)
T ss_pred             ceeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCC-----CeEEEEeccc-c
Confidence            367789999999999999988766432 1111 111 12333444678899999999988877     9999999764 3


Q ss_pred             EEEEEE--------ccCceeEEEEcCCe-------EEEE--eCCeEEEEEcC-----CceeeeEEecc-CCCcceEEEec
Q 014977          126 CIGEFA--------FRSDVRSVKLSRDR-------IVVV--LEHKIYVYSFV-----DLKLLHQIETL-ANLRGLCCLSH  182 (415)
Q Consensus       126 ~~~~~~--------~~~~i~~l~~~~~~-------~~~~--~d~~i~iwd~~-----~~~~~~~~~~~-~~~~~~~~~~~  182 (415)
                      .+..+.        ....|.+|.|.+-.       .+++  ..|.++-|-+.     ..+..+.+... ..+.++.++.+
T Consensus        76 ~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy  155 (282)
T PF15492_consen   76 ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVY  155 (282)
T ss_pred             eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEE
Confidence            333433        23567777775432       3333  67777766652     22333444321 12346778888


Q ss_pred             CCCceEEEEeCCccCeEEEEEcCCcceEEEecCccceEEEEe---CCCCCEEEEEeCCCc-----EEEEEECCCCcEEEE
Q 014977          183 HSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTL---TLDGLLLATASTRGT-----LIRIFNTVDGTRLQE  254 (415)
Q Consensus       183 ~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~---sp~g~~l~s~s~dg~-----~I~vwd~~~~~~~~~  254 (415)
                      ++..++|+++|.....-...          ++....+++-..   .|..+. ++...|+.     .-.+|.+-+.+....
T Consensus       156 ~p~h~LLlVgG~~~~~~~~s----------~a~~~GLtaWRiL~~~Pyyk~-v~~~~~~~~~~~~~~~~~~~~~~~~fs~  224 (282)
T PF15492_consen  156 HPKHRLLLVGGCEQNQDGMS----------KASSCGLTAWRILSDSPYYKQ-VTSSEDDITASSKRRGLLRIPSFKFFSR  224 (282)
T ss_pred             cCCCCEEEEeccCCCCCccc----------cccccCceEEEEcCCCCcEEE-ccccCccccccccccceeeccceeeeec
Confidence            88888888777655421111          111122222111   122211 12222221     012444333222211


Q ss_pred             EecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977          255 VRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       255 ~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                       . ......|..|..||||..||+...+|.|.+|++.+-+..
T Consensus       225 -~-~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~  264 (282)
T PF15492_consen  225 -Q-GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQ  264 (282)
T ss_pred             -c-ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhh
Confidence             1 114568999999999999999999999999999886644

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.06  E-value=2.9e-07  Score=81.02  Aligned_cols=221  Identities=12%  Similarity=0.066  Sum_probs=143.5

Q ss_pred             CceEEEEEeCCCCEEEEEe--CCcEEEEEccCCceeEEE-eccCCC----------eeEEEEeeeCCeEEEEecCCCCCC
Q 014977           45 IELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRR-DLKSGG----------FRIVEMLFRCNILALVGAGDNSQY  111 (415)
Q Consensus        45 ~~V~~l~~sp~g~~la~g~--d~~v~iw~~~~~~~~~~~-~~~~~~----------~~~~~~~~~~~~~~l~s~~~d~~~  111 (415)
                      .+-..++++++|++++++.  .|.|.++.+...+.+... .+-.|.          ..+....+.|++.++++..-.   
T Consensus        89 ~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG---  165 (346)
T COG2706          89 SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG---  165 (346)
T ss_pred             CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC---
Confidence            3348899999999999999  899999999653322211 110111          125667788998777665431   


Q ss_pred             CCCeEEEEECCCCCEEEEE----EccCceeEEEEcCCeEEEE----eCCeEEEEEcCCc-e---eeeEEec----cCCCc
Q 014977          112 PPTKVIIWDDHQSRCIGEF----AFRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDL-K---LLHQIET----LANLR  175 (415)
Q Consensus       112 ~~~~i~vwd~~~~~~~~~~----~~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~-~---~~~~~~~----~~~~~  175 (415)
                       -..|.+|++..|+....-    +....-+.|.|+|+++++.    .+++|.+|..... .   .++.+..    .....
T Consensus       166 -~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~  244 (346)
T COG2706         166 -TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTN  244 (346)
T ss_pred             -CceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCC
Confidence             258999999987654332    3467788999999998876    7999999998663 2   2333321    22334


Q ss_pred             ceEEEecCCCceEEEEeCCccCeEEEEEcC--CcceEE---EecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECC--C
Q 014977          176 GLCCLSHHSSTSVLACPGLQRGQVRIEHFG--LNMIKL---INAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTV--D  248 (415)
Q Consensus       176 ~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~--~~~~~~---~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~--~  248 (415)
                      +..++..+++|++|.++......|.++...  +..+..   ...+........|++.|++|+++..++..|.+|...  +
T Consensus       245 ~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T  324 (346)
T COG2706         245 WAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET  324 (346)
T ss_pred             ceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence            677888899999998765545556654332  222222   223444467899999999999999887668888654  4


Q ss_pred             CcEEEEEecCCCcccEEEEEeC
Q 014977          249 GTRLQEVRRGVDRAEIYSIALS  270 (415)
Q Consensus       249 ~~~~~~~~~~~~~~~v~~l~~s  270 (415)
                      |++-..... .......|+.|.
T Consensus       325 G~L~~~~~~-~~~p~Pvcv~f~  345 (346)
T COG2706         325 GRLTLLGRY-AVVPEPVCVKFL  345 (346)
T ss_pred             ceEEecccc-cCCCCcEEEEEc
Confidence            544322221 133345566664

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.03  E-value=2.8e-06  Score=75.03  Aligned_cols=193  Identities=10%  Similarity=-0.037  Sum_probs=123.8

Q ss_pred             EEeeeC-CeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEc-CCeEEEE-eCCeEEEEEcCCceeeeEE
Q 014977           92 EMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLS-RDRIVVV-LEHKIYVYSFVDLKLLHQI  168 (415)
Q Consensus        92 ~~~~~~-~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~-~~~~~~~-~d~~i~iwd~~~~~~~~~~  168 (415)
                      ...|.+ ++.++++.-..     +.|..|+..+++. ..+.... ...+.+. +++.+++ ..+.+.++|..+++.....
T Consensus         4 gp~~d~~~g~l~~~D~~~-----~~i~~~~~~~~~~-~~~~~~~-~~G~~~~~~~g~l~v~~~~~~~~~d~~~g~~~~~~   76 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPG-----GRIYRVDPDTGEV-EVIDLPG-PNGMAFDRPDGRLYVADSGGIAVVDPDTGKVTVLA   76 (246)
T ss_dssp             EEEEETTTTEEEEEETTT-----TEEEEEETTTTEE-EEEESSS-EEEEEEECTTSEEEEEETTCEEEEETTTTEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCC-----CEEEEEECCCCeE-EEEecCC-CceEEEEccCCEEEEEEcCceEEEecCCCcEEEEe
Confidence            356776 66666665554     8999999877654 3344334 7777887 7777777 7777888899888665444


Q ss_pred             ec--cC-CCcceEEEecCCCceEEEEeCCcc-------CeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEE-eCC
Q 014977          169 ET--LA-NLRGLCCLSHHSSTSVLACPGLQR-------GQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATA-STR  237 (415)
Q Consensus       169 ~~--~~-~~~~~~~~~~~~~~~~l~~~g~~d-------g~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~-s~d  237 (415)
                      ..  .. .......+..+++|.+.++.....       |.|..++..+ .+..+...-...+.|+|+|+++.|+.+ +..
T Consensus        77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~-~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~  155 (246)
T PF08450_consen   77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDG-KVTVVADGLGFPNGIAFSPDGKTLYVADSFN  155 (246)
T ss_dssp             EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTS-EEEEEEEEESSEEEEEEETTSSEEEEEETTT
T ss_pred             eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCC-eEEEEecCcccccceEECCcchheeeccccc
Confidence            43  12 334666788888887655422111       4566555553 344444445667899999999977654 555


Q ss_pred             CcEEEEEECCCC-c-E--EEEE-ecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977          238 GTLIRIFNTVDG-T-R--LQEV-RRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (415)
Q Consensus       238 g~~I~vwd~~~~-~-~--~~~~-~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  294 (415)
                      +. |..+++... . .  ...+ ......+..-.+++..+|++.++....+.|.+++.+ ++
T Consensus       156 ~~-i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~  215 (246)
T PF08450_consen  156 GR-IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GK  215 (246)
T ss_dssp             TE-EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SC
T ss_pred             ce-eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-cc
Confidence            66 999988532 2 1  1222 111122347889999999988888888999999976 54

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.01  E-value=7.1e-07  Score=84.22  Aligned_cols=221  Identities=16%  Similarity=0.081  Sum_probs=131.6

Q ss_pred             CCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccC
Q 014977           56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRS  134 (415)
Q Consensus        56 g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~  134 (415)
                      +..+++++ ++.+.-+|..+++.+....+.....  ...... ++.+++.. .+     +.+..+|..+|+.+.......
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~--~~p~v~-~~~v~v~~-~~-----g~l~ald~~tG~~~W~~~~~~  135 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLS--GGVGAD-GGLVFVGT-EK-----GEVIALDAEDGKELWRAKLSS  135 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcc--cceEEc-CCEEEEEc-CC-----CEEEEEECCCCcEeeeeccCc
Confidence            55666766 8899999998888777766533211  112222 34444443 33     899999999999988877554


Q ss_pred             ceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCcce---EEEecCCCceEEEEeCCccCeEEEEE-cCCcc
Q 014977          135 DVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGL---CCLSHHSSTSVLACPGLQRGQVRIEH-FGLNM  208 (415)
Q Consensus       135 ~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~g~~dg~v~i~~-~~~~~  208 (415)
                      .+.+.-...++.+++  .++.++.||.++++.+..+.........   ...... ++ .+++ +..++.+...+ .+++.
T Consensus       136 ~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~~-~v~~-~~~~g~v~ald~~tG~~  212 (377)
T TIGR03300       136 EVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-DG-GVLV-GFAGGKLVALDLQTGQP  212 (377)
T ss_pred             eeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-CC-EEEE-ECCCCEEEEEEccCCCE
Confidence            443322223445555  6899999999999988776543321110   000111 12 2333 55677776644 34544


Q ss_pred             eEEEecCc----cc---eEEEEeCC--CCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEE
Q 014977          209 IKLINAHD----SH---IACFTLTL--DGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVA  279 (415)
Q Consensus       209 ~~~~~~~~----~~---i~~l~~sp--~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~  279 (415)
                      +.......    ..   ...+.-+|  .+..+++++.+|. ++.||..+|+.+......    ......  .++..|+++
T Consensus       213 ~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~-l~a~d~~tG~~~W~~~~~----~~~~p~--~~~~~vyv~  285 (377)
T TIGR03300       213 LWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGR-VAALDLRSGRVLWKRDAS----SYQGPA--VDDNRLYVT  285 (377)
T ss_pred             eeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCE-EEEEECCCCcEEEeeccC----CccCce--EeCCEEEEE
Confidence            43322110    00   00011111  3457778888999 999999999987766531    111222  246678888


Q ss_pred             eCCCeEEEEEceeccc
Q 014977          280 SDKGTVHIFSLRVRVV  295 (415)
Q Consensus       280 s~dg~i~vwd~~~~~~  295 (415)
                      +.||.|+.+|..+++.
T Consensus       286 ~~~G~l~~~d~~tG~~  301 (377)
T TIGR03300       286 DADGVVVALDRRSGSE  301 (377)
T ss_pred             CCCCeEEEEECCCCcE
Confidence            8999999999988863

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.01  E-value=5.4e-07  Score=85.43  Aligned_cols=195  Identities=8%  Similarity=-0.016  Sum_probs=121.6

Q ss_pred             eEEEEeeeCCeEE-EEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE------eCCeEEEEEcCC
Q 014977           89 RIVEMLFRCNILA-LVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV------LEHKIYVYSFVD  161 (415)
Q Consensus        89 ~~~~~~~~~~~~~-l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~------~d~~i~iwd~~~  161 (415)
                      ......|+|++.. ++..+.+.  ....|.++|+.+++........+......|+|||..++      .+..|+++|+.+
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~--~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~  266 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGE--RKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT  266 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccC--CCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence            5677889998853 33222210  12689999998887766555666677788999997766      246799999877


Q ss_pred             ceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCe--EEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCC--
Q 014977          162 LKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQ--VRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTR--  237 (415)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~--v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d--  237 (415)
                      ++.. .+.....  ......++|+++.|+++....+.  |++.+..+...+.+......  ...|+|||++|+.....  
T Consensus       267 g~~~-~LT~~~~--~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~  341 (419)
T PRK04043        267 KTLT-QITNYPG--IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETN  341 (419)
T ss_pred             CcEE-EcccCCC--ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCC
Confidence            7643 3432222  12233566677777776544454  55555555555444322222  24899999988776543  


Q ss_pred             -----C-cEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCC---eEEEEEceecc
Q 014977          238 -----G-TLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKG---TVHIFSLRVRV  294 (415)
Q Consensus       238 -----g-~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg---~i~vwd~~~~~  294 (415)
                           + ..|.+.|+.+++.. .+...   .......|+|||+.|+..+.++   .+.+.+++...
T Consensus       342 ~~~~~~~~~I~v~d~~~g~~~-~LT~~---~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~  403 (419)
T PRK04043        342 NEFGKNTFNLYLISTNSDYIR-RLTAN---GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNK  403 (419)
T ss_pred             cccCCCCcEEEEEECCCCCeE-ECCCC---CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCe
Confidence                 2 23889999887653 44432   1233588999999888666543   36666665543

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.95  E-value=7e-06  Score=72.52  Aligned_cols=212  Identities=14%  Similarity=0.081  Sum_probs=135.8

Q ss_pred             EEEEeC-CCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeee-CCeEEEEecCCCCCCCCCeEEEEECCCCC
Q 014977           49 SVSWNQ-DYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFR-CNILALVGAGDNSQYPPTKVIIWDDHQSR  125 (415)
Q Consensus        49 ~l~~sp-~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~s~~~d~~~~~~~i~vwd~~~~~  125 (415)
                      ++.|.+ ++.++++.. .+.|..|+.++..... ..+ ..   ...+.+. +++.++++..       +.+.++|+.+++
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~-~~---~~G~~~~~~~g~l~v~~~-------~~~~~~d~~~g~   71 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDL-PG---PNGMAFDRPDGRLYVADS-------GGIAVVDPDTGK   71 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EES-SS---EEEEEEECTTSEEEEEET-------TCEEEEETTTTE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-Eec-CC---CceEEEEccCCEEEEEEc-------CceEEEecCCCc
Confidence            578998 666666665 8889999988754433 222 22   5556666 7787777765       556666988886


Q ss_pred             EEEEEEc------cCceeEEEEcCCeEEEEe---------C--CeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceE
Q 014977          126 CIGEFAF------RSDVRSVKLSRDRIVVVL---------E--HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSV  188 (415)
Q Consensus       126 ~~~~~~~------~~~i~~l~~~~~~~~~~~---------d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (415)
                      .......      ....+++++.++|.+.+.         .  +.|+.++.. ++....... ..  ....+.+++++..
T Consensus        72 ~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~-~~--~pNGi~~s~dg~~  147 (246)
T PF08450_consen   72 VTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG-LG--FPNGIAFSPDGKT  147 (246)
T ss_dssp             EEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE-ES--SEEEEEEETTSSE
T ss_pred             EEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC-cc--cccceEECCcchh
Confidence            5544442      346789999999987771         1  567888866 554433332 22  3445556666766


Q ss_pred             EEEeCCccCeEEEEEcC--Ccc---eEEE-ecCc--cceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCC
Q 014977          189 LACPGLQRGQVRIEHFG--LNM---IKLI-NAHD--SHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVD  260 (415)
Q Consensus       189 l~~~g~~dg~v~i~~~~--~~~---~~~~-~~~~--~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~  260 (415)
                      |+++.+..+.|..++..  ...   ...+ ....  +..-.+++..+|++.++....+. |.++|.. |+.+..+...  
T Consensus       148 lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~-I~~~~p~-G~~~~~i~~p--  223 (246)
T PF08450_consen  148 LYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGR-IVVFDPD-GKLLREIELP--  223 (246)
T ss_dssp             EEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTE-EEEEETT-SCEEEEEE-S--
T ss_pred             eeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCE-EEEECCC-ccEEEEEcCC--
Confidence            66556677777775543  221   1222 2222  34778999999998887777888 9999975 9998888864  


Q ss_pred             cccEEEEEe-CCCCCEEEEEe
Q 014977          261 RAEIYSIAL-SPNVQWLAVAS  280 (415)
Q Consensus       261 ~~~v~~l~~-spdg~~l~s~s  280 (415)
                      ...+++++| -++.+.|+..+
T Consensus       224 ~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  224 VPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             SSSEEEEEEESTTSSEEEEEE
T ss_pred             CCCEEEEEEECCCCCEEEEEe
Confidence            247999999 46766665443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.94  E-value=2.8e-06  Score=74.85  Aligned_cols=238  Identities=17%  Similarity=0.160  Sum_probs=149.2

Q ss_pred             ceEEEEEeC-CCCEEEEEe--CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECC
Q 014977           46 ELISVSWNQ-DYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH  122 (415)
Q Consensus        46 ~V~~l~~sp-~g~~la~g~--d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~  122 (415)
                      ....++.+| ....++.+.  .....+||..+.+............-.-.-.|++++.+|.+...|..-..|.|-|||..
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~   85 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA   85 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence            345678888 555666777  44577899988766554433222222234679999999998887755567899999988


Q ss_pred             -CCCEEEEEE-ccCceeEEEEcCCeEEE-Ee--------------------CCeEEEEEcCCceeeeEEec--cCCCcce
Q 014977          123 -QSRCIGEFA-FRSDVRSVKLSRDRIVV-VL--------------------EHKIYVYSFVDLKLLHQIET--LANLRGL  177 (415)
Q Consensus       123 -~~~~~~~~~-~~~~i~~l~~~~~~~~~-~~--------------------d~~i~iwd~~~~~~~~~~~~--~~~~~~~  177 (415)
                       +.+.+.++. +.-.-..+.+.||+..+ +.                    +-.+...|..+|+.+.+...  ..+...+
T Consensus        86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi  165 (305)
T PF07433_consen   86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI  165 (305)
T ss_pred             CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence             557777776 66667788899999443 32                    23455566677777766443  2233355


Q ss_pred             EEEecCCCceEEEEeCCccCe-------EEEEEcCCcceEEEe-------cCccceEEEEeCCCCCEEEEEeCCCcEEEE
Q 014977          178 CCLSHHSSTSVLACPGLQRGQ-------VRIEHFGLNMIKLIN-------AHDSHIACFTLTLDGLLLATASTRGTLIRI  243 (415)
Q Consensus       178 ~~~~~~~~~~~l~~~g~~dg~-------v~i~~~~~~~~~~~~-------~~~~~i~~l~~sp~g~~l~s~s~dg~~I~v  243 (415)
                      .-++.++++..++. .-..|.       |.++.. ++.+..+.       .-...+-+|+++++|.++++.+-.|..+.+
T Consensus       166 RHLa~~~~G~V~~a-~Q~qg~~~~~~PLva~~~~-g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~  243 (305)
T PF07433_consen  166 RHLAVDGDGTVAFA-MQYQGDPGDAPPLVALHRR-GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAV  243 (305)
T ss_pred             eeEEecCCCcEEEE-EecCCCCCccCCeEEEEcC-CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEE
Confidence            56666666544322 211111       111221 12222222       234678999999999988887776665999


Q ss_pred             EECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceec
Q 014977          244 FNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR  293 (415)
Q Consensus       244 wd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~  293 (415)
                      ||..+++.+....-    ..+..++-.+++ ++++.+ .|.  ++.+...
T Consensus       244 ~d~~tg~~~~~~~l----~D~cGva~~~~~-f~~ssG-~G~--~~~~~~~  285 (305)
T PF07433_consen  244 WDAATGRLLGSVPL----PDACGVAPTDDG-FLVSSG-QGQ--LIRLSPD  285 (305)
T ss_pred             EECCCCCEeecccc----CceeeeeecCCc-eEEeCC-Ccc--EEEccCc
Confidence            99999998876653    246677777776 555443 453  4444433

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.92  E-value=1.3e-07  Score=80.56  Aligned_cols=178  Identities=13%  Similarity=0.083  Sum_probs=116.3

Q ss_pred             CeEEEEECCCCCEEE--EEE--ccCceeEEEEcC---CeE-EEE---eCCeEEEEEcCCceeeeEEecc---CCCc-ceE
Q 014977          114 TKVIIWDDHQSRCIG--EFA--FRSDVRSVKLSR---DRI-VVV---LEHKIYVYSFVDLKLLHQIETL---ANLR-GLC  178 (415)
Q Consensus       114 ~~i~vwd~~~~~~~~--~~~--~~~~i~~l~~~~---~~~-~~~---~d~~i~iwd~~~~~~~~~~~~~---~~~~-~~~  178 (415)
                      |.+.+|++...+.+.  +++  ....+..|.|..   ++. .++   ..|.|.+|..........+.+-   .-.. ...
T Consensus        46 Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~l  125 (339)
T KOG0280|consen   46 GKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEAL  125 (339)
T ss_pred             cceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeee
Confidence            677777766654433  222  344566666642   333 122   6788888876543333333221   1111 234


Q ss_pred             EEecCCCceEEEEeCCccCeEEE-EE--cCCcceEEEecCccceEEEEeCC-CCCEEEEEeCCCcEEEEEECC-CCcEEE
Q 014977          179 CLSHHSSTSVLACPGLQRGQVRI-EH--FGLNMIKLINAHDSHIACFTLTL-DGLLLATASTRGTLIRIFNTV-DGTRLQ  253 (415)
Q Consensus       179 ~~~~~~~~~~l~~~g~~dg~v~i-~~--~~~~~~~~~~~~~~~i~~l~~sp-~g~~l~s~s~dg~~I~vwd~~-~~~~~~  253 (415)
                      ++.+++.+..+++ +..+|.+.+ +.  ...+.++..+.|+.+++...|+. +.+++.+|+.|+. +..||++ .++.+.
T Consensus       126 slD~~~~~~~i~v-s~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~-l~~~D~R~p~~~i~  203 (339)
T KOG0280|consen  126 SLDISTSGTKIFV-SDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGS-LSCWDIRIPKTFIW  203 (339)
T ss_pred             EEEeeccCceEEE-EcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCce-EEEEEecCCcceee
Confidence            5555555555554 667888875 32  23355667899999999999985 3468999999999 9999998 444443


Q ss_pred             E-EecCCCcccEEEEEeCC-CCCEEEEEeCCCeEEEEEceeccc
Q 014977          254 E-VRRGVDRAEIYSIALSP-NVQWLAVASDKGTVHIFSLRVRVV  295 (415)
Q Consensus       254 ~-~~~~~~~~~v~~l~~sp-dg~~l~s~s~dg~i~vwd~~~~~~  295 (415)
                      . .+.  |...|.+|.-+| .+.+|++|+.|..|++||.++-.+
T Consensus       204 ~n~kv--H~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k  245 (339)
T KOG0280|consen  204 HNSKV--HTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK  245 (339)
T ss_pred             eccee--eecceEEEecCCCCCceEEEeccccceeeeehhcccC
Confidence            3 233  677888888775 678999999999999999996554

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.92  E-value=6.8e-07  Score=82.64  Aligned_cols=236  Identities=9%  Similarity=0.077  Sum_probs=150.1

Q ss_pred             CceEEEEEeCCCCEEEEEe---C---------CcEEEEEccCCceeEEEeccCCCeeE-EEEeeeCCeEEEEecCCCCCC
Q 014977           45 IELISVSWNQDYGCFAAGT---S---------CGFRIYNCEPFKETFRRDLKSGGFRI-VEMLFRCNILALVGAGDNSQY  111 (415)
Q Consensus        45 ~~V~~l~~sp~g~~la~g~---d---------~~v~iw~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~s~~~d~~~  111 (415)
                      ..|.-+.|||..++|++-+   .         ..+.|||+.++............... .-+.|+-|..++|--..    
T Consensus       250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~----  325 (698)
T KOG2314|consen  250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG----  325 (698)
T ss_pred             CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc----
Confidence            3488999999999999754   1         46899999987654332221122222 23568888888877655    


Q ss_pred             CCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE-----e---CCeEEEEEcCCceeeeEEeccCCCcceEEEec
Q 014977          112 PPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-----L---EHKIYVYSFVDLKLLHQIETLANLRGLCCLSH  182 (415)
Q Consensus       112 ~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~-----~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  182 (415)
                        +.|.||+..+-.++..-. -...|....|+|.+.+++     .   -..+.+..+.+++.+++-..+.  +.-+.+.|
T Consensus       326 --~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfn--VsDckLhW  401 (698)
T KOG2314|consen  326 --NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFN--VSDCKLHW  401 (698)
T ss_pred             --ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeecccee--eeccEEEe
Confidence              689999866533322222 357789999999999988     1   2457777777777766554433  24567777


Q ss_pred             CCCceEEEEeC---------CccCeEEEEEcCCcceEE-EecCccceEEEEeCCCCCEEEEEeC--CCcEEEEEECCC-C
Q 014977          183 HSSTSVLACPG---------LQRGQVRIEHFGLNMIKL-INAHDSHIACFTLTLDGLLLATAST--RGTLIRIFNTVD-G  249 (415)
Q Consensus       183 ~~~~~~l~~~g---------~~dg~v~i~~~~~~~~~~-~~~~~~~i~~l~~sp~g~~l~s~s~--dg~~I~vwd~~~-~  249 (415)
                      ..+|.+|++--         +.-..+.|+..+.+.+.. ...-...|...+|-|.|..+++-+.  ....+.+|.+++ .
T Consensus       402 Qk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~  481 (698)
T KOG2314|consen  402 QKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNI  481 (698)
T ss_pred             ccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCC
Confidence            77777775411         011112232222222111 1223567788899999987665443  233388998873 2


Q ss_pred             ---cEEEEEecCCCcccEEEEEeCCCCCEEEEEe---CCCeEEEEEcee
Q 014977          250 ---TRLQEVRRGVDRAEIYSIALSPNVQWLAVAS---DKGTVHIFSLRV  292 (415)
Q Consensus       250 ---~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s---~dg~i~vwd~~~  292 (415)
                         +++..+.    ....+.+.|+|.|++++.+.   ..|.+.++|..-
T Consensus       482 ~~~~lVk~~d----k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~  526 (698)
T KOG2314|consen  482 KKPSLVKELD----KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY  526 (698)
T ss_pred             Cchhhhhhhc----ccccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence               2333443    23568899999999988764   467899999885

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.92  E-value=8e-07  Score=84.28  Aligned_cols=198  Identities=10%  Similarity=0.011  Sum_probs=120.1

Q ss_pred             ceEEEEEeCCCCE-EEEEe-C---CcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEE-ecCCCCCCCCCeEEEE
Q 014977           46 ELISVSWNQDYGC-FAAGT-S---CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALV-GAGDNSQYPPTKVIIW  119 (415)
Q Consensus        46 ~V~~l~~sp~g~~-la~g~-d---~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~d~~~~~~~i~vw  119 (415)
                      .+....|+|||+. ++..+ +   ..|.++|+.+++.....   ..........|+||+..++ +...+   .+..|.++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt---~~~g~~~~~~~SPDG~~la~~~~~~---g~~~Iy~~  262 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA---SSQGMLVVSDVSKDGSKLLLTMAPK---GQPDIYLY  262 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe---cCCCcEEeeEECCCCCEEEEEEccC---CCcEEEEE
Confidence            6788999999985 66544 3   34777888775543322   2233344566899885443 33222   13688899


Q ss_pred             ECCCCCEEEEEEccCceeEEEEcCCeEEEE--eCC----eEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeC
Q 014977          120 DDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEH----KIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG  193 (415)
Q Consensus       120 d~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  193 (415)
                      |+.+++......+........|+|||+.++  .+.    .|+++|+.+++..+.... ..  ..  ..++|++..|+++.
T Consensus       263 dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~--~~--~~~SPDG~~Ia~~~  337 (419)
T PRK04043        263 DTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK--NN--SSVSTYKNYIVYSS  337 (419)
T ss_pred             ECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC--cC--ceECCCCCEEEEEE
Confidence            988876544333444345668999998777  332    799999987765433321 11  11  25667777787765


Q ss_pred             Ccc--------CeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCc--EEEEEECCCCcEEEEEe
Q 014977          194 LQR--------GQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGT--LIRIFNTVDGTRLQEVR  256 (415)
Q Consensus       194 ~~d--------g~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~--~I~vwd~~~~~~~~~~~  256 (415)
                      ...        ..|.+.+..+...+.+.... ......|+|||+.|+....++.  .+.+.++ +|.....+.
T Consensus       338 ~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~-~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l-~g~~~~~l~  408 (419)
T PRK04043        338 RETNNEFGKNTFNLYLISTNSDYIRRLTANG-VNQFPRFSSDGGSIMFIKYLGNQSALGIIRL-NYNKSFLFP  408 (419)
T ss_pred             cCCCcccCCCCcEEEEEECCCCCeEECCCCC-CcCCeEECCCCCEEEEEEccCCcEEEEEEec-CCCeeEEee
Confidence            443        25566555555566665432 3346889999998776654432  2666776 444444454

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.91  E-value=5.7e-07  Score=83.74  Aligned_cols=184  Identities=10%  Similarity=0.089  Sum_probs=129.2

Q ss_pred             CCCCEEEEEe-CCcEEEEEccCCceeEEEec-cCCCeeEEEEee------e--------------CCeEEEEecCCCCCC
Q 014977           54 QDYGCFAAGT-SCGFRIYNCEPFKETFRRDL-KSGGFRIVEMLF------R--------------CNILALVGAGDNSQY  111 (415)
Q Consensus        54 p~g~~la~g~-d~~v~iw~~~~~~~~~~~~~-~~~~~~~~~~~~------~--------------~~~~~l~s~~~d~~~  111 (415)
                      |-+.++|... ||.++||+...++......- ..-....++..|      +              .+...++-|...   
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~---   79 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQ---   79 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCC---
Confidence            4567888888 99999999987554332211 011122222222      1              233455555554   


Q ss_pred             CCCeEEEEECCCCCEEEEEE---ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCC
Q 014977          112 PPTKVIIWDDHQSRCIGEFA---FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSS  185 (415)
Q Consensus       112 ~~~~i~vwd~~~~~~~~~~~---~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (415)
                        |.|.+|++..|+....+.   |.+.|.++.++.+-..+.   .|..+..|+....+.+..+.....  ....+.+.|+
T Consensus        80 --g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~--~~~sl~is~D  155 (541)
T KOG4547|consen   80 --GSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKP--LVSSLCISPD  155 (541)
T ss_pred             --ccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCC--ccceEEEcCC
Confidence              999999999999988887   889999999888766655   689999999999988888877666  4444555556


Q ss_pred             ceEEEEeCCccCeEEEEEcC-CcceEEEecCccceEEEEeCCC-----CCEEEEEe-CCCcEEEEEECCC
Q 014977          186 TSVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLD-----GLLLATAS-TRGTLIRIFNTVD  248 (415)
Q Consensus       186 ~~~l~~~g~~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~-----g~~l~s~s-~dg~~I~vwd~~~  248 (415)
                      +..+++ +  .++|++|+.. ++.+..+.+|.++|.++.|--+     |.++.++. .+.. |.+|-+..
T Consensus       156 ~~~l~~-a--s~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~-i~~w~v~~  221 (541)
T KOG4547|consen  156 GKILLT-A--SRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERG-ITVWVVEK  221 (541)
T ss_pred             CCEEEe-c--cceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccc-eeEEEEEc
Confidence            777765 3  4789997765 5678889999999999999876     66666543 3444 78886543

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.91  E-value=3.5e-08  Score=87.54  Aligned_cols=156  Identities=16%  Similarity=0.124  Sum_probs=104.1

Q ss_pred             EEEEcCCeEEEE---eCCeEEEEEcCCc----eeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceE
Q 014977          138 SVKLSRDRIVVV---LEHKIYVYSFVDL----KLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIK  210 (415)
Q Consensus       138 ~l~~~~~~~~~~---~d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~  210 (415)
                      .+..++.+++++   .+....++++...    +.+........+..+..+..+.. ..++-..++...+.+|.....+..
T Consensus        67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~s-v~v~dkagD~~~~di~s~~~~~~~  145 (390)
T KOG3914|consen   67 LVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTS-VLVADKAGDVYSFDILSADSGRCE  145 (390)
T ss_pred             ccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccce-EEEEeecCCceeeeeecccccCcc
Confidence            344556666666   3444445555322    23333333333333333333322 222222334455555655545566


Q ss_pred             EEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEc
Q 014977          211 LINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSL  290 (415)
Q Consensus       211 ~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~  290 (415)
                      .+-+|-..++.++|+||+++|+++..|.. |+|-....--.+..+.-+ |..-|..++.-++ +.|++++.|++|++||+
T Consensus       146 ~~lGhvSml~dVavS~D~~~IitaDRDEk-IRvs~ypa~f~IesfclG-H~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~  222 (390)
T KOG3914|consen  146 PILGHVSMLLDVAVSPDDQFIITADRDEK-IRVSRYPATFVIESFCLG-HKEFVSTISLTDN-YLLLSGSGDKTLRLWDI  222 (390)
T ss_pred             hhhhhhhhhheeeecCCCCEEEEecCCce-EEEEecCcccchhhhccc-cHhheeeeeeccC-ceeeecCCCCcEEEEec
Confidence            67799999999999999999999999999 999887766666666544 8888999998654 66899999999999999


Q ss_pred             eecccCC
Q 014977          291 RVRVVGE  297 (415)
Q Consensus       291 ~~~~~~~  297 (415)
                      .+++...
T Consensus       223 ~sgk~L~  229 (390)
T KOG3914|consen  223 TSGKLLD  229 (390)
T ss_pred             ccCCccc
Confidence            9999763

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.91  E-value=3.7e-08  Score=84.57  Aligned_cols=295  Identities=15%  Similarity=0.174  Sum_probs=165.2

Q ss_pred             cCCCCCccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCc---eeEEEeccCCCe------------eEEEEee
Q 014977           32 FGHPQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFK---ETFRRDLKSGGF------------RIVEMLF   95 (415)
Q Consensus        32 ~~~~~~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~---~~~~~~~~~~~~------------~~~~~~~   95 (415)
                      |+....-......+.|+++.|...|.+|++|. .|.|.+|.-+...   -.+...|+.|..            .+..+.|
T Consensus        14 fgdk~d~~~~tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w   93 (460)
T COG5170          14 FGDKLDLNSSTEADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEW   93 (460)
T ss_pred             hcchhhcccccccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheee
Confidence            33333333455677899999999999999999 8899999876432   111112222221            2334444


Q ss_pred             eC---CeEEEEecCCCCCCCCCeEEEEECCCCCE--EEEEEc--------cCceeEEEEcCCeEEEE----eCCeEEEEE
Q 014977           96 RC---NILALVGAGDNSQYPPTKVIIWDDHQSRC--IGEFAF--------RSDVRSVKLSRDRIVVV----LEHKIYVYS  158 (415)
Q Consensus        96 ~~---~~~~l~s~~~d~~~~~~~i~vwd~~~~~~--~~~~~~--------~~~i~~l~~~~~~~~~~----~d~~i~iwd  158 (415)
                      -.   ...+|+++.+      .+|++|.+.....  +.+-..        .+++++    +....+-    .|..|....
T Consensus        94 ~~~t~r~hFLlstNd------ktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s----~~~l~lprls~hd~iiaa~p  163 (460)
T COG5170          94 FDDTGRNHFLLSTND------KTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTS----TKELLLPRLSEHDEIIAAKP  163 (460)
T ss_pred             ecCCCcceEEEecCC------ceeeeeeeecccchhhhccccccccccccCCCcCC----HHHhhcccccccceEEEecc
Confidence            33   2356666554      8999999765422  211111        111111    1111111    111221111


Q ss_pred             cCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCc----ceEEEecCc-----cceEEEEeCCCC-
Q 014977          159 FVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN----MIKLINAHD-----SHIACFTLTLDG-  228 (415)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~----~~~~~~~~~-----~~i~~l~~sp~g-  228 (415)
                          .   .+....++..+..++++.+...++++  .|=.|.+|.....    .+..++.|.     .-|++..|+|.. 
T Consensus       164 ----~---rvyaNaH~yhiNSiS~NsD~et~lSa--DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~c  234 (460)
T COG5170         164 ----C---RVYANAHPYHINSISFNSDKETLLSA--DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMC  234 (460)
T ss_pred             ----c---eeccccceeEeeeeeecCchheeeec--cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHc
Confidence                1   11122233356677777777777652  5666777876541    233344553     357889999964 


Q ss_pred             CEEEEEeCCCcEEEEEECCCCc------EEEE--EecCC------CcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977          229 LLLATASTRGTLIRIFNTVDGT------RLQE--VRRGV------DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (415)
Q Consensus       229 ~~l~s~s~dg~~I~vwd~~~~~------~~~~--~~~~~------~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  294 (415)
                      ..+...+..|. |++-|++...      .+..  +.+-.      -...|..+.|+++|++|++-.. -+|+|||++..+
T Consensus       235 n~fmYSsSkG~-Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k  312 (460)
T COG5170         235 NVFMYSSSKGE-IKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAK  312 (460)
T ss_pred             ceEEEecCCCc-EEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccccc
Confidence            45667777899 9999997321      1111  11100      1246888999999999987654 469999998766


Q ss_pred             cCC-CCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC-CE
Q 014977          295 VGE-DSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NT  372 (415)
Q Consensus       295 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  372 (415)
                      ... ++..|                                 -.+...+...+..+-.|.+|.        |.|+.+ ..
T Consensus       313 ~pikTi~~h---------------------------------~~l~~~l~d~YEnDaifdkFe--------isfSgd~~~  351 (460)
T COG5170         313 NPIKTIPMH---------------------------------CDLMDELNDVYENDAIFDKFE--------ISFSGDDKH  351 (460)
T ss_pred             CCceeechH---------------------------------HHHHHHHHhhhhccceeeeEE--------EEecCCccc
Confidence            432 21111                                 011112334555555566665        567766 66


Q ss_pred             EEEEEeCCcEEEEEEe
Q 014977          373 VVIVSMDGSFYRCSFD  388 (415)
Q Consensus       373 i~~~~~dg~~~~~~~~  388 (415)
                      +++++....+.+|-.+
T Consensus       352 v~sgsy~NNfgiyp~~  367 (460)
T COG5170         352 VLSGSYSNNFGIYPTD  367 (460)
T ss_pred             ccccccccceeeeccc
Confidence            7777777777777644

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.87  E-value=1.4e-07  Score=89.44  Aligned_cols=229  Identities=11%  Similarity=0.019  Sum_probs=147.1

Q ss_pred             cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~  117 (415)
                      ...||.+.|.-+.|+.+.+.|.+.. +|-|.||-+-.+...-...-......+.+++|..+|..++-.-.|     |.|.
T Consensus        66 tLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeD-----GavI  140 (1189)
T KOG2041|consen   66 TLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYED-----GAVI  140 (1189)
T ss_pred             hhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEcc-----CCEE
Confidence            5789999999999999999999988 999999988654332222222456678899999998877766555     8888


Q ss_pred             EEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCc-------eeeeEEec----cCCCcceEEEe-
Q 014977          118 IWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDL-------KLLHQIET----LANLRGLCCLS-  181 (415)
Q Consensus       118 vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~-------~~~~~~~~----~~~~~~~~~~~-  181 (415)
                      |=.++..+ +.--. .......+.|++|...+.   .+|.+++||.+..       .+.....+    ....+...++. 
T Consensus       141 VGsvdGNR-IwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~  219 (1189)
T KOG2041|consen  141 VGSVDGNR-IWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNT  219 (1189)
T ss_pred             EEeeccce-ecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeecc
Confidence            87654433 22211 223344688999987766   7899999996421       11111111    01111111111 


Q ss_pred             ----c-CCCceEEEEeCCccCeEEEE-EcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCc--------EEEEEECC
Q 014977          182 ----H-HSSTSVLACPGLQRGQVRIE-HFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGT--------LIRIFNTV  247 (415)
Q Consensus       182 ----~-~~~~~~l~~~g~~dg~v~i~-~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~--------~I~vwd~~  247 (415)
                          + -|+...+++ +..+|.+.|- ..+......+ .....+..+.|+++|..||+++.+..        .|.+|. .
T Consensus       220 g~~~~v~pdrP~lav-cy~nGr~QiMR~eND~~Pvv~-dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p  296 (1189)
T KOG2041|consen  220 GPYQPVPPDRPRLAV-CYANGRMQIMRSENDPEPVVV-DTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-P  296 (1189)
T ss_pred             CccccCCCCCCEEEE-EEcCceehhhhhcCCCCCeEE-ecccEeecceecCCCcEEEEccCcccccCccccceEEEec-c
Confidence                1 235556665 6688888883 2222222222 23377889999999999999987531        266664 4


Q ss_pred             CCcEEEEEecCCCcccEEEEEeCCCCCEEEE
Q 014977          248 DGTRLQEVRRGVDRAEIYSIALSPNVQWLAV  278 (415)
Q Consensus       248 ~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s  278 (415)
                      -|+.+.+++.  ....|++++|-..|-.+|.
T Consensus       297 ~G~i~gtlkv--pg~~It~lsWEg~gLriA~  325 (1189)
T KOG2041|consen  297 YGHIVGTLKV--PGSCITGLSWEGTGLRIAI  325 (1189)
T ss_pred             chhheEEEec--CCceeeeeEEcCCceEEEE
Confidence            6778888886  5567899988766654443

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.87  E-value=3.1e-08  Score=102.54  Aligned_cols=192  Identities=11%  Similarity=0.189  Sum_probs=141.8

Q ss_pred             CCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEEC
Q 014977           43 DEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD  121 (415)
Q Consensus        43 h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~  121 (415)
                      +-..|.++.=+|...+.++|+ ||.+++|.....+.+..... .+...+..+.|+.+|..+..+..|     |.+.+|..
T Consensus      2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt-~g~s~vtr~~f~~qGnk~~i~d~d-----g~l~l~q~ 2280 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRT-AGNSRVTRSRFNHQGNKFGIVDGD-----GDLSLWQA 2280 (2439)
T ss_pred             ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeec-cCcchhhhhhhcccCCceeeeccC-----Cceeeccc
Confidence            445678888889889999999 99999999988777665544 445888999999998888777776     99999996


Q ss_pred             CCCCEEEEEE-ccCceeEEEEcCCeEEEE----eCCeEEEEEcCC--c-eeeeEEeccCCCcceEEEecCCCceEEEEeC
Q 014977          122 HQSRCIGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVD--L-KLLHQIETLANLRGLCCLSHHSSTSVLACPG  193 (415)
Q Consensus       122 ~~~~~~~~~~-~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  193 (415)
                      . .++....+ |.....++.|-.....-+    .++.+.+||.--  + .++.  ..|..  ...++.+.|+..++++ |
T Consensus      2281 ~-pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~--gaT~l~~~P~~qllis-g 2354 (2439)
T KOG1064|consen 2281 S-PKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDG--GATVLAYAPKHQLLIS-G 2354 (2439)
T ss_pred             C-CcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceee--eecCC--CceEEEEcCcceEEEe-c
Confidence            6 44444455 788888888876333333    578999999632  1 2333  56666  4555666666666665 8


Q ss_pred             CccCeEEEEEcCCcce-EEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEec
Q 014977          194 LQRGQVRIEHFGLNMI-KLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR  257 (415)
Q Consensus       194 ~~dg~v~i~~~~~~~~-~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~  257 (415)
                      +.+|.|++|+.+.+.+ +.++.         ++ ...++++|+..|. |+||++..-..++.+..
T Consensus      2355 gr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~-ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2355 GRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGN-IKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred             CCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccc-eEEEEccccchhhcCch
Confidence            8999999999876543 23332         44 5568999999999 99999988877777764

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.87  E-value=6.5e-07  Score=75.54  Aligned_cols=239  Identities=13%  Similarity=0.080  Sum_probs=144.2

Q ss_pred             EEEEEeC-----CCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCeEEEEE
Q 014977           48 ISVSWNQ-----DYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWD  120 (415)
Q Consensus        48 ~~l~~sp-----~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~i~vwd  120 (415)
                      ..+.|-|     ...+||.|+ .|.+.+|.+.+.+..... ...+...+.-..-.. ...-+.-++.|     .++++.+
T Consensus        71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~-cd~snn~v~~~~r~cd~~~~~~i~snd-----ht~k~~~  144 (344)
T KOG4532|consen   71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQ-CDVSNNDVTLVKRYCDLKFPLNIASND-----HTGKTMV  144 (344)
T ss_pred             ecccccchHhhccccEEEeccccceeeeecccCcccceee-ecccccchhhhhhhcccccceeeccCC-----cceeEEE
Confidence            3455555     234788887 999999999865433322 112222111111111 11112223333     6777777


Q ss_pred             CCCCCEEEEEEc-cCceeEEEEcCCeEEEE---eCCeEEEEEcCC-ceeeeEEeccCCCcceEEEecCCCceEEEEeCCc
Q 014977          121 DHQSRCIGEFAF-RSDVRSVKLSRDRIVVV---LEHKIYVYSFVD-LKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ  195 (415)
Q Consensus       121 ~~~~~~~~~~~~-~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  195 (415)
                      ++-+........ .-.+.++++++|+++.+   ....|..|.+.. ++.+..+..........+.+++.....+|+ +..
T Consensus       145 ~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv-~~Q  223 (344)
T KOG4532|consen  145 VSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAV-VFQ  223 (344)
T ss_pred             EecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEE-Eec
Confidence            554432222221 13488999999999988   567788888854 333333333333335566677766667765 789


Q ss_pred             cCeEEEEEcCCcc------eEEEecCccceEEEEeCCCCC--EEEEEeCCCcEEEEEECCCCcEEEEEecCC-----C-c
Q 014977          196 RGQVRIEHFGLNM------IKLINAHDSHIACFTLTLDGL--LLATASTRGTLIRIFNTVDGTRLQEVRRGV-----D-R  261 (415)
Q Consensus       196 dg~v~i~~~~~~~------~~~~~~~~~~i~~l~~sp~g~--~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~-----~-~  261 (415)
                      ||++.||+.+.-.      ..+-..|.+.+..+.|++.|.  +|...-.-+. +.+.|+++++..+.+....     | .
T Consensus       224 dg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~-~hv~D~R~~~~~q~I~i~~d~~~~~~t  302 (344)
T KOG4532|consen  224 DGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSR-VHVVDTRNYVNHQVIVIPDDVERKHNT  302 (344)
T ss_pred             CCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcce-EEEEEcccCceeeEEecCccccccccc
Confidence            9999999876522      222345899999999998775  4555555566 9999999987655544311     1 1


Q ss_pred             ccEEEEEeCCCCCEEEEEeCCCeEEEEEceeccc
Q 014977          262 AEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV  295 (415)
Q Consensus       262 ~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~  295 (415)
                      ..|..-.|+.++.-+.+.+++. +.=|++.+..+
T Consensus       303 q~ifgt~f~~~n~s~~v~~e~~-~ae~ni~srsR  335 (344)
T KOG4532|consen  303 QHIFGTNFNNENESNDVKNELQ-GAEYNILSRSR  335 (344)
T ss_pred             cccccccccCCCcccccccchh-hheeeccccce
Confidence            3477788888887777776654 66677766553

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.85  E-value=1.7e-06  Score=78.69  Aligned_cols=185  Identities=13%  Similarity=0.138  Sum_probs=129.3

Q ss_pred             eCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEc----------cCceeEEE----EcC-CeEEEE--eCCeEEEEE
Q 014977           96 RCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAF----------RSDVRSVK----LSR-DRIVVV--LEHKIYVYS  158 (415)
Q Consensus        96 ~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~----------~~~i~~l~----~~~-~~~~~~--~d~~i~iwd  158 (415)
                      +.+|..++-...      |.|.++|..+....+ +.-          ...+.-+.    |++ +|.+++  ..|+..|.+
T Consensus       275 nsDGkrIvFq~~------GdIylydP~td~lek-ldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~  347 (668)
T COG4946         275 NSDGKRIVFQNA------GDIYLYDPETDSLEK-LDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMR  347 (668)
T ss_pred             CCCCcEEEEecC------CcEEEeCCCcCccee-eecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEEC
Confidence            456665555443      899999977654322 210          00111111    221 344444  788888888


Q ss_pred             cCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccC-eEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCC
Q 014977          159 FVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRG-QVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTR  237 (415)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg-~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d  237 (415)
                      ...+-.++.  ++...+....+..++++  ++. |..|| .+-|++..+..++.+...-+.|.++..+++|++++.+...
T Consensus       348 ~~~~~~iqv--~~~~~VrY~r~~~~~e~--~vi-gt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr  422 (668)
T COG4946         348 PWDGYSIQV--GKKGGVRYRRIQVDPEG--DVI-GTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDR  422 (668)
T ss_pred             CCCCeeEEc--CCCCceEEEEEccCCcc--eEE-eccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCc
Confidence            655544432  23333556667777664  333 55777 7888999999999999999999999999999999999988


Q ss_pred             CcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCC----eEEEEEceeccc
Q 014977          238 GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKG----TVHIFSLRVRVV  295 (415)
Q Consensus       238 g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg----~i~vwd~~~~~~  295 (415)
                      .. |.+.|+.+|.....-+.  ..+-|+.+.|+|++++||-+--+|    .|+++|+..++-
T Consensus       423 ~e-l~vididngnv~~idkS--~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki  481 (668)
T COG4946         423 FE-LWVIDIDNGNVRLIDKS--EYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI  481 (668)
T ss_pred             eE-EEEEEecCCCeeEeccc--ccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE
Confidence            88 99999999987533332  566899999999999999776665    699999998764

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.84  E-value=2.7e-06  Score=78.00  Aligned_cols=236  Identities=12%  Similarity=0.088  Sum_probs=151.0

Q ss_pred             EEEEeCCCCEEEEEeCCcEEEEEcc-CCceeEEEeccCCCeeEEEEeeeCC--eEEEEecCCCCCCCCCeEEEEECCCCC
Q 014977           49 SVSWNQDYGCFAAGTSCGFRIYNCE-PFKETFRRDLKSGGFRIVEMLFRCN--ILALVGAGDNSQYPPTKVIIWDDHQSR  125 (415)
Q Consensus        49 ~l~~sp~g~~la~g~d~~v~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~s~~~d~~~~~~~i~vwd~~~~~  125 (415)
                      -+.|+-+..++|--....+.|+++. ...+.-...+  ....+..+.++|.  +..++.-.-...-.+..+++|.+..+.
T Consensus       136 ~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~l--r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s  213 (561)
T COG5354         136 VLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNL--RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNS  213 (561)
T ss_pred             eeeeeecchhhhhhccCeEEEEecCCccccCchhhc--cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCC
Confidence            5667777666665456677888852 1111111111  2356777778775  223333222222245899999998887


Q ss_pred             EEEEEE-ccCceeEEEEcCCeEEEE--------------eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEE
Q 014977          126 CIGEFA-FRSDVRSVKLSRDRIVVV--------------LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLA  190 (415)
Q Consensus       126 ~~~~~~-~~~~i~~l~~~~~~~~~~--------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  190 (415)
                      .+.+.. +...=..+.|++.|.+++              ....++++++....+- ....-..++.-.+|.+..++ +.+
T Consensus       214 ~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~-V~~~~~~pVhdf~W~p~S~~-F~v  291 (561)
T COG5354         214 VLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIP-VEKDLKDPVHDFTWEPLSSR-FAV  291 (561)
T ss_pred             eeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccc-eeccccccceeeeecccCCc-eeE
Confidence            777666 455556788998887776              1367889988743322 22233455555666666554 334


Q ss_pred             EeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCC---CcEEEEEECCCCcEEE-EEecCCCcccEEE
Q 014977          191 CPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTR---GTLIRIFNTVDGTRLQ-EVRRGVDRAEIYS  266 (415)
Q Consensus       191 ~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d---g~~I~vwd~~~~~~~~-~~~~~~~~~~v~~  266 (415)
                      ++|..+-.+.+++.++.....+  ....=+.+.|+|.+++++.++-|   |. |.+||....-... .+.+    ....-
T Consensus       292 i~g~~pa~~s~~~lr~Nl~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gn-i~i~~~~~rf~~~~~~~~----~n~s~  364 (561)
T COG5354         292 ISGYMPASVSVFDLRGNLRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGN-IEIFDPAGRFKVAGAFNG----LNTSY  364 (561)
T ss_pred             EecccccceeecccccceEEec--CCcccccccccCcccEEEEecCCccccc-eEEeccCCceEEEEEeec----CCceE
Confidence            4577888888888888744433  34455678899999999987765   56 9999976544333 4544    23456


Q ss_pred             EEeCCCCCEEEEEeC------CCeEEEEEceeccc
Q 014977          267 IALSPNVQWLAVASD------KGTVHIFSLRVRVV  295 (415)
Q Consensus       267 l~~spdg~~l~s~s~------dg~i~vwd~~~~~~  295 (415)
                      +.|+||++++.+...      |..|.|||+.....
T Consensus       365 ~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~  399 (561)
T COG5354         365 CDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKV  399 (561)
T ss_pred             eeccCCceEEEecCCCcccccCcceEEEEecCchh
Confidence            789999999887653      77899999987653

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.83  E-value=2.4e-06  Score=75.04  Aligned_cols=215  Identities=17%  Similarity=0.157  Sum_probs=131.0

Q ss_pred             CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeE-EEEc
Q 014977           64 SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRS-VKLS  142 (415)
Q Consensus        64 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~-l~~~  142 (415)
                      ++.|..||..+++.+....+..............++.+++.. .+     +.|..||..+|+.+..+.....+.. ....
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~-~~-----~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~   75 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVAS-GD-----GNLYALDAKTGKVLWRFDLPGPISGAPVVD   75 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEE-TT-----SEEEEEETTTSEEEEEEECSSCGGSGEEEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEc-CC-----CEEEEEECCCCCEEEEeeccccccceeeec
Confidence            577888999888888877663222222322333445555553 33     9999999999999999885444333 2334


Q ss_pred             CCeEEEE-eCCeEEEEEcCCceeeeEE-eccCCCc---ceEEEecCCCceEEEEeCCccCeEEEEE-cCCcceEEEecCc
Q 014977          143 RDRIVVV-LEHKIYVYSFVDLKLLHQI-ETLANLR---GLCCLSHHSSTSVLACPGLQRGQVRIEH-FGLNMIKLINAHD  216 (415)
Q Consensus       143 ~~~~~~~-~d~~i~iwd~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~l~~~g~~dg~v~i~~-~~~~~~~~~~~~~  216 (415)
                      .+..++. .++.++.+|..+|+.+... .......   .........  ..+++ +..++.|...+ .+++.+.......
T Consensus        76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~g~l~~~d~~tG~~~w~~~~~~  152 (238)
T PF13360_consen   76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDG--DRLYV-GTSSGKLVALDPKTGKLLWKYPVGE  152 (238)
T ss_dssp             TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEET--TEEEE-EETCSEEEEEETTTTEEEEEEESST
T ss_pred             ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEec--CEEEE-EeccCcEEEEecCCCcEEEEeecCC
Confidence            4444444 5789999999999998884 3321111   122233332  23333 33477787755 5566666665533


Q ss_pred             cc----------e-EEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeE
Q 014977          217 SH----------I-ACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTV  285 (415)
Q Consensus       217 ~~----------i-~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i  285 (415)
                      ..          + ..+.+. ++ .++.++.++..+.+ |+.+++.+.....  .  .+..+ ...++..|+.++.++.|
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~~--~--~~~~~-~~~~~~~l~~~~~~~~l  224 (238)
T PF13360_consen  153 PRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAV-DLATGEKLWSKPI--S--GIYSL-PSVDGGTLYVTSSDGRL  224 (238)
T ss_dssp             T-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEE-ETTTTEEEEEECS--S---ECEC-EECCCTEEEEEETTTEE
T ss_pred             CCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEE-ECCCCCEEEEecC--C--CccCC-ceeeCCEEEEEeCCCEE
Confidence            22          1 223333 45 67777777752555 9999997643321  2  23221 34677888888899999


Q ss_pred             EEEEceeccc
Q 014977          286 HIFSLRVRVV  295 (415)
Q Consensus       286 ~vwd~~~~~~  295 (415)
                      ..||+++++.
T Consensus       225 ~~~d~~tG~~  234 (238)
T PF13360_consen  225 YALDLKTGKV  234 (238)
T ss_dssp             EEEETTTTEE
T ss_pred             EEEECCCCCE
Confidence            9999999874

...

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.83  E-value=2.7e-07  Score=88.41  Aligned_cols=234  Identities=12%  Similarity=0.123  Sum_probs=156.6

Q ss_pred             eEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC------------CeEEEEecCCCCCCCCC
Q 014977           47 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC------------NILALVGAGDNSQYPPT  114 (415)
Q Consensus        47 V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~l~s~~~d~~~~~~  114 (415)
                      -.++.|+|.| ++|.|+...|.|-|..+.+.+....  .|...+..+.|.|            ....++++...     |
T Consensus        18 ~~A~Dw~~~G-LiAygshslV~VVDs~s~q~iqsie--~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~-----G   89 (1062)
T KOG1912|consen   18 RNAADWSPSG-LIAYGSHSLVSVVDSRSLQLIQSIE--LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADIS-----G   89 (1062)
T ss_pred             ccccccCccc-eEEEecCceEEEEehhhhhhhhccc--cCccceeEEEeccCCCchhccCccccceeEEecccc-----C
Confidence            6678888866 8899998889999988766555443  5667777777764            12456666666     9


Q ss_pred             eEEEEECCCCCEEEEEE-ccCceeEEEEcC---CeE--EEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCC-
Q 014977          115 KVIIWDDHQSRCIGEFA-FRSDVRSVKLSR---DRI--VVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSS-  185 (415)
Q Consensus       115 ~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~---~~~--~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-  185 (415)
                      .|.+||...+..+..+. +..++.+++|-+   +.+  +++  ....+.+|+..+|+..........  ...+|..+|- 
T Consensus        90 rIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~--iLs~f~~DPfd  167 (1062)
T KOG1912|consen   90 RIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHE--ILSCFRVDPFD  167 (1062)
T ss_pred             cEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCc--ceeeeeeCCCC
Confidence            99999999998888888 678899999865   232  222  678999999999998877765554  3334544442 


Q ss_pred             ceEEEEeCCccCeEEE-EEcCC-------cceEEEecCcc-------------------------ceEEEEeCCCCCEEE
Q 014977          186 TSVLACPGLQRGQVRI-EHFGL-------NMIKLINAHDS-------------------------HIACFTLTLDGLLLA  232 (415)
Q Consensus       186 ~~~l~~~g~~dg~v~i-~~~~~-------~~~~~~~~~~~-------------------------~i~~l~~sp~g~~l~  232 (415)
                      .+.+...| ..|.+.+ .+...       +..+.-..|..                         ....++|+|.-+-++
T Consensus       168 ~rh~~~l~-s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l  246 (1062)
T KOG1912|consen  168 SRHFCVLG-SKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL  246 (1062)
T ss_pred             cceEEEEc-cCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE
Confidence            22333334 4666665 33221       22222222221                         011356788665555


Q ss_pred             EEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCC--EEEEEeCCCeEEEEEceecc
Q 014977          233 TASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQ--WLAVASDKGTVHIFSLRVRV  294 (415)
Q Consensus       233 s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~--~l~s~s~dg~i~vwd~~~~~  294 (415)
                      -...... +.|+|++-..++..+.-  ..+.+.-+.+-|+++  .|++.-.||.+.+|-.+.-.
T Consensus       247 fi~~pre-llv~dle~~~~l~vvpi--er~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~  307 (1062)
T KOG1912|consen  247 FITFPRE-LLVFDLEYECCLAVVPI--ERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEP  307 (1062)
T ss_pred             EEEeccc-eEEEcchhhceeEEEEe--ccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccC
Confidence            5555667 99999998888887765  444556677777654  68899999999999876643

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.76  E-value=2e-08  Score=92.39  Aligned_cols=203  Identities=15%  Similarity=0.180  Sum_probs=142.8

Q ss_pred             ccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCC-------CCEEEEEE-ccCceeEEEEcCCeEEEE-eCCe
Q 014977           83 LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ-------SRCIGEFA-FRSDVRSVKLSRDRIVVV-LEHK  153 (415)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~-------~~~~~~~~-~~~~i~~l~~~~~~~~~~-~d~~  153 (415)
                      +.+|...+..+.--.+..-+++++.|     ++|++|.++.       ..+..+++ |+.+|.++.|-.+.+.++ .|+.
T Consensus       731 f~GH~~~iRai~AidNENSFiSASkD-----KTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~g  805 (1034)
T KOG4190|consen  731 FTGHQEKIRAIAAIDNENSFISASKD-----KTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGG  805 (1034)
T ss_pred             ccCcHHHhHHHHhcccccceeeccCC-----ceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCc
Confidence            34565566555555566667788887     9999999753       23555555 899999999999998888 8999


Q ss_pred             EEEEEcCCceeeeEEecc--CCCcceEEEecCCCceEEEEeCCccCeEEEEEcC-CcceEEEe-----cCccceEEEEeC
Q 014977          154 IYVYSFVDLKLLHQIETL--ANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG-LNMIKLIN-----AHDSHIACFTLT  225 (415)
Q Consensus       154 i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~-~~~~~~~~-----~~~~~i~~l~~s  225 (415)
                      |++||.--++.+.++...  ....+.+..-++-+..++++.++...+|++.+.+ .+-+..++     +....+.+++..
T Consensus       806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa  885 (1034)
T KOG4190|consen  806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA  885 (1034)
T ss_pred             ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence            999998777766544221  1222333333343444555545788899995543 33333333     345668899999


Q ss_pred             CCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEE-EEceecc
Q 014977          226 LDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHI-FSLRVRV  294 (415)
Q Consensus       226 p~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v-wd~~~~~  294 (415)
                      +.|+.++.+=.+|. |.+.|.++|+.+..++.  .......++ .|..+.|+....|.++.| |..-.+.
T Consensus       886 ~~GN~lAa~LSnGc-i~~LDaR~G~vINswrp--mecdllqla-apsdq~L~~saldHslaVnWhaldgi  951 (1034)
T KOG4190|consen  886 DKGNKLAAALSNGC-IAILDARNGKVINSWRP--MECDLLQLA-APSDQALAQSALDHSLAVNWHALDGI  951 (1034)
T ss_pred             cCcchhhHHhcCCc-EEEEecCCCceeccCCc--ccchhhhhc-CchhHHHHhhcccceeEeeehhcCCe
Confidence            99999999999999 99999999999887765  444455554 367778888888888888 8765543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.76  E-value=5.6e-06  Score=87.21  Aligned_cols=199  Identities=9%  Similarity=0.005  Sum_probs=126.1

Q ss_pred             ceEEEEEeCCCCEEEEEe--CCcEEEEEccCCceeEEEe-------ccCC-------CeeEEEEeeeC-CeEEEEecCCC
Q 014977           46 ELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRD-------LKSG-------GFRIVEMLFRC-NILALVGAGDN  108 (415)
Q Consensus        46 ~V~~l~~sp~g~~la~g~--d~~v~iw~~~~~~~~~~~~-------~~~~-------~~~~~~~~~~~-~~~~l~s~~~d  108 (415)
                      ....+++.+++..|+++.  .+.|+++|..+........       +.++       -.....+++++ ++.++++...+
T Consensus       625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~  704 (1057)
T PLN02919        625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ  704 (1057)
T ss_pred             CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence            457899999888777666  6778999886533211100       0000       01234678888 66676776655


Q ss_pred             CCCCCCeEEEEECCCCCEEEEEE---------------ccCceeEEEEcCCeEE--EE--eCCeEEEEEcCCceeeeEEe
Q 014977          109 SQYPPTKVIIWDDHQSRCIGEFA---------------FRSDVRSVKLSRDRIV--VV--LEHKIYVYSFVDLKLLHQIE  169 (415)
Q Consensus       109 ~~~~~~~i~vwd~~~~~~~~~~~---------------~~~~i~~l~~~~~~~~--~~--~d~~i~iwd~~~~~~~~~~~  169 (415)
                           +.|++||..++.......               .-.....|+++|++..  ++  .++.|++||+.++.......
T Consensus       705 -----~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~g  779 (1057)
T PLN02919        705 -----HQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAG  779 (1057)
T ss_pred             -----CeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEe
Confidence                 899999987765432110               0123567999998753  33  57899999998765321110


Q ss_pred             cc-------------CC------CcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEecC--------------c
Q 014977          170 TL-------------AN------LRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAH--------------D  216 (415)
Q Consensus       170 ~~-------------~~------~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~--------------~  216 (415)
                      +.             ..      ......+.+++++.++++ ...++.|++|+.....+..+.+.              -
T Consensus       780 g~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVA-Ds~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l  858 (1057)
T PLN02919        780 GDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVA-DSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQL  858 (1057)
T ss_pred             cccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEE-ECCCCEEEEEECCCCeEEEEeccCCcCCCCCccccccc
Confidence            00             00      002234555666665544 56788999988876655544332              1


Q ss_pred             cceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcE
Q 014977          217 SHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR  251 (415)
Q Consensus       217 ~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~  251 (415)
                      .....|+++++|+++++-+.++. |++||+.+++.
T Consensus       859 ~~P~GIavd~dG~lyVaDt~Nn~-Irvid~~~~~~  892 (1057)
T PLN02919        859 SEPAGLALGENGRLFVADTNNSL-IRYLDLNKGEA  892 (1057)
T ss_pred             CCceEEEEeCCCCEEEEECCCCE-EEEEECCCCcc
Confidence            24678999999998888888888 99999988865

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.74  E-value=8.5e-06  Score=77.31  Aligned_cols=220  Identities=11%  Similarity=0.048  Sum_probs=122.4

Q ss_pred             CEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCc
Q 014977           57 GCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSD  135 (415)
Q Consensus        57 ~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~  135 (415)
                      ..++++. ++.+.-+|.++++...+..+... . ....... ++.+++... +     +.|..+|.++|+.+..+....+
T Consensus       121 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-~-~ssP~v~-~~~v~v~~~-~-----g~l~ald~~tG~~~W~~~~~~~  191 (394)
T PRK11138        121 GKVYIGSEKGQVYALNAEDGEVAWQTKVAGE-A-LSRPVVS-DGLVLVHTS-N-----GMLQALNESDGAVKWTVNLDVP  191 (394)
T ss_pred             CEEEEEcCCCEEEEEECCCCCCcccccCCCc-e-ecCCEEE-CCEEEEECC-C-----CEEEEEEccCCCEeeeecCCCC
Confidence            3455566 88899999988887776654221 1 1111112 444555433 3     8999999999999988874322


Q ss_pred             e------eEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEeccCCC--cc---e--EEEecC-CCceEEEEeCCccCeEE
Q 014977          136 V------RSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANL--RG---L--CCLSHH-SSTSVLACPGLQRGQVR  200 (415)
Q Consensus       136 i------~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~--~~---~--~~~~~~-~~~~~l~~~g~~dg~v~  200 (415)
                      .      ..-....+..++. .++.+..+|..+++.+.........  ..   .  ....|- .++. +++ ++.+|.+.
T Consensus       192 ~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~-vy~-~~~~g~l~  269 (394)
T PRK11138        192 SLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGV-VYA-LAYNGNLV  269 (394)
T ss_pred             cccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCE-EEE-EEcCCeEE
Confidence            1      1112222333333 6888999999998876654321110  00   0  000110 0222 323 33566666


Q ss_pred             EEE-cCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEE
Q 014977          201 IEH-FGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVA  279 (415)
Q Consensus       201 i~~-~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~  279 (415)
                      ..+ .+++.+.....  .....+.  ..+..|+.++.+|. +..+|..+|+.+........ ....+...  .+.+|+.+
T Consensus       270 ald~~tG~~~W~~~~--~~~~~~~--~~~~~vy~~~~~g~-l~ald~~tG~~~W~~~~~~~-~~~~sp~v--~~g~l~v~  341 (394)
T PRK11138        270 ALDLRSGQIVWKREY--GSVNDFA--VDGGRIYLVDQNDR-VYALDTRGGVELWSQSDLLH-RLLTAPVL--YNGYLVVG  341 (394)
T ss_pred             EEECCCCCEEEeecC--CCccCcE--EECCEEEEEcCCCe-EEEEECCCCcEEEcccccCC-CcccCCEE--ECCEEEEE
Confidence            533 34444333221  1111122  24556777888999 99999999987755432101 11111222  24577889


Q ss_pred             eCCCeEEEEEceeccc
Q 014977          280 SDKGTVHIFSLRVRVV  295 (415)
Q Consensus       280 s~dg~i~vwd~~~~~~  295 (415)
                      +.||.|++.|.++++.
T Consensus       342 ~~~G~l~~ld~~tG~~  357 (394)
T PRK11138        342 DSEGYLHWINREDGRF  357 (394)
T ss_pred             eCCCEEEEEECCCCCE
Confidence            9999999999988864

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=1.7e-07  Score=84.39  Aligned_cols=246  Identities=11%  Similarity=0.018  Sum_probs=165.8

Q ss_pred             CCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccC-CceeEEEeccCCCeeEEEEeeeCCeEEEEecCC-CCCCCCCeEE
Q 014977           41 DVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEP-FKETFRRDLKSGGFRIVEMLFRCNILALVGAGD-NSQYPPTKVI  117 (415)
Q Consensus        41 ~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d~~~~~~~i~  117 (415)
                      --|.+.|+.+.-. -.+++.+++ ||.++.|.-.. ....+...+..|-..+..++.+-++.++.+.+. |     ..++
T Consensus         6 ymhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~D-----hs~K   79 (558)
T KOG0882|consen    6 YMHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPD-----HSVK   79 (558)
T ss_pred             hcccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcc-----ccee
Confidence            3477778777554 356888888 99999998765 344455556667677777888888988888766 6     9999


Q ss_pred             EEECCCCCEEEEEEccCceeEEEE--cCC-e--EEEE---eCCeEEEEEcCCce--eeeEEeccCCCcceEEEecCCCce
Q 014977          118 IWDDHQSRCIGEFAFRSDVRSVKL--SRD-R--IVVV---LEHKIYVYSFVDLK--LLHQIETLANLRGLCCLSHHSSTS  187 (415)
Q Consensus       118 vwd~~~~~~~~~~~~~~~i~~l~~--~~~-~--~~~~---~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  187 (415)
                      ++|+++-..+.-++.......+.|  ++. -  .+.+   .++.+.++|-....  ....-..|..++....+.+..+  
T Consensus        80 vfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D--  157 (558)
T KOG0882|consen   80 VFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD--  157 (558)
T ss_pred             EEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc--
Confidence            999887665544442222222222  222 1  2222   68999999964332  2233355677666666666554  


Q ss_pred             EEEEeCCccCeEEEEEcCCc---c-------------eEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcE
Q 014977          188 VLACPGLQRGQVRIEHFGLN---M-------------IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR  251 (415)
Q Consensus       188 ~l~~~g~~dg~v~i~~~~~~---~-------------~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~  251 (415)
                      .++ +....|.|.-|...+.   +             +..+........++.|+|+|..+.+-+.|.. |+++++++|+.
T Consensus       158 s~v-SiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~Drk-VR~F~~KtGkl  235 (558)
T KOG0882|consen  158 SAV-SIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRK-VRGFVFKTGKL  235 (558)
T ss_pred             cee-eccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccE-EEEEEeccchh
Confidence            333 4667788988987740   0             1111233556789999999999999999999 99999999876


Q ss_pred             EEEEecC-------------------------------CCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCC
Q 014977          252 LQEVRRG-------------------------------VDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGE  297 (415)
Q Consensus       252 ~~~~~~~-------------------------------~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~  297 (415)
                      ++.+...                               .....-+.+.|...|++|+-++-=| |+|.++.++....
T Consensus       236 vqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~r  311 (558)
T KOG0882|consen  236 VQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVR  311 (558)
T ss_pred             hhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEE
Confidence            6544320                               0112335578899999999999888 9999999988653

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.66  E-value=1.3e-05  Score=67.95  Aligned_cols=188  Identities=12%  Similarity=0.000  Sum_probs=118.3

Q ss_pred             EEEEecCCCCCCCCCeEEEEECCCCCEEEEEE--ccCce---eEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEeccCC
Q 014977          100 LALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA--FRSDV---RSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLAN  173 (415)
Q Consensus       100 ~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~--~~~~i---~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~  173 (415)
                      ..|+.++.-     |...+|...+.+....+-  +...|   ...+-+.-...++ .|.+++++++.-+.....+  |..
T Consensus        85 ~~la~gG~~-----g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~--h~~  157 (344)
T KOG4532|consen   85 VTLADGGAS-----GQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAV--HNQ  157 (344)
T ss_pred             cEEEecccc-----ceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccccee--ecc
Confidence            456666655     999999987655433222  22222   2223333334445 6888888887544322222  222


Q ss_pred             CcceEEEecCCCceEEEEeCCccCeEEEEEcCC--cceEE--EecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC
Q 014977          174 LRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL--NMIKL--INAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG  249 (415)
Q Consensus       174 ~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~--~~~~~--~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~  249 (415)
                      .+....++.+++++++++.|. ...|..+..+.  ..+..  .......-.+..|+.....+|++..||. +.|||++..
T Consensus       158 ~~~~ns~~~snd~~~~~~Vgd-s~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~-~~I~DVR~~  235 (344)
T KOG4532|consen  158 NLTQNSLHYSNDPSWGSSVGD-SRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGT-CAIYDVRNM  235 (344)
T ss_pred             ccceeeeEEcCCCceEEEecC-CCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCc-EEEEEeccc
Confidence            245667777888889998774 55565544433  22222  2223344457889999999999999999 999999875


Q ss_pred             cEEEEE---ecCCCcccEEEEEeCCCCC--EEEEEeCCCeEEEEEceecccC
Q 014977          250 TRLQEV---RRGVDRAEIYSIALSPNVQ--WLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       250 ~~~~~~---~~~~~~~~v~~l~~spdg~--~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                      ......   ....|.+.+..+.|++-|.  +|...-.-+.+.+-|+++++.-
T Consensus       236 ~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~  287 (344)
T KOG4532|consen  236 ATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNH  287 (344)
T ss_pred             ccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCcee
Confidence            433222   2234788999999998664  4445555678999999998753

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.64  E-value=2.8e-05  Score=73.76  Aligned_cols=223  Identities=12%  Similarity=0.064  Sum_probs=127.2

Q ss_pred             CCEEEEEe-CCcEEEEEccCCceeEEEeccCCCe--------eE-EEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCC
Q 014977           56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGF--------RI-VEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR  125 (415)
Q Consensus        56 g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~--------~~-~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~  125 (415)
                      +..+.+++ ++.+.-+|.++++...+..+.....        .+ ...... ++.+++.. .+     +.+..+|.++|+
T Consensus        69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~v~v~~-~~-----g~l~ald~~tG~  141 (394)
T PRK11138         69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVA-GGKVYIGS-EK-----GQVYALNAEDGE  141 (394)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEE-CCEEEEEc-CC-----CEEEEEECCCCC
Confidence            44555555 8888888988888777766532110        00 001122 33444443 33     899999999999


Q ss_pred             EEEEEEccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCcce---EEEecCCCceEEEEeCCccCeEE
Q 014977          126 CIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGL---CCLSHHSSTSVLACPGLQRGQVR  200 (415)
Q Consensus       126 ~~~~~~~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~g~~dg~v~  200 (415)
                      .+.+......+.+--.-.++.+++  .++.++.+|.++|+.+..+.........   ..-... ++. +++ +..+|.+.
T Consensus       142 ~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~-~~~-v~~-~~~~g~v~  218 (394)
T PRK11138        142 VAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA-FGG-AIV-GGDNGRVS  218 (394)
T ss_pred             CcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE-CCE-EEE-EcCCCEEE
Confidence            998887544443221112455555  6889999999999988777543211000   000011 122 223 34567666


Q ss_pred             E-EEcCCcceEEEecCc----c---ceEEEEeCC--CCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeC
Q 014977          201 I-EHFGLNMIKLINAHD----S---HIACFTLTL--DGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALS  270 (415)
Q Consensus       201 i-~~~~~~~~~~~~~~~----~---~i~~l~~sp--~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~s  270 (415)
                      . +..+++.+.......    .   ....+.-+|  .+..++.++.+|. +..+|..+|+.+......    ....+.  
T Consensus       219 a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~-l~ald~~tG~~~W~~~~~----~~~~~~--  291 (394)
T PRK11138        219 AVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGN-LVALDLRSGQIVWKREYG----SVNDFA--  291 (394)
T ss_pred             EEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCe-EEEEECCCCCEEEeecCC----CccCcE--
Confidence            5 444444433322110    0   011111222  2446777778898 999999999987665431    111222  


Q ss_pred             CCCCEEEEEeCCCeEEEEEceeccc
Q 014977          271 PNVQWLAVASDKGTVHIFSLRVRVV  295 (415)
Q Consensus       271 pdg~~l~s~s~dg~i~vwd~~~~~~  295 (415)
                      .++..|+.++.+|.+..+|.++++.
T Consensus       292 ~~~~~vy~~~~~g~l~ald~~tG~~  316 (394)
T PRK11138        292 VDGGRIYLVDQNDRVYALDTRGGVE  316 (394)
T ss_pred             EECCEEEEEcCCCeEEEEECCCCcE
Confidence            2456788888999999999988863

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.64  E-value=1.2e-07  Score=57.26  Aligned_cols=39  Identities=33%  Similarity=0.561  Sum_probs=36.0

Q ss_pred             CcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEE
Q 014977          249 GTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFS  289 (415)
Q Consensus       249 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd  289 (415)
                      |+++..+.+  |...|.+|+|+|++.+|++++.|+.|++||
T Consensus         1 g~~~~~~~~--h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRG--HSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEES--SSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcC--CCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            357788888  889999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.64  E-value=5.5e-07  Score=85.91  Aligned_cols=238  Identities=11%  Similarity=0.101  Sum_probs=149.2

Q ss_pred             CCCceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCC---eEEEEecCCCCCCCCCeEEEE
Q 014977           43 DEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCN---ILALVGAGDNSQYPPTKVIIW  119 (415)
Q Consensus        43 h~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~s~~~d~~~~~~~i~vw  119 (415)
                      -.+.+.++.++|.|+-+|.++.-.+.+-|++......+..-+-..-.+....|++.   ...+++.+.      ..-.+|
T Consensus        23 v~~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~------qkaiiw   96 (1081)
T KOG0309|consen   23 VDGGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSN------QKAIIW   96 (1081)
T ss_pred             ecCcccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCc------chhhhh
Confidence            35678889999999999999966677778764222111111122223444555543   355666555      566788


Q ss_pred             ECCC--CCEEEEEE--ccCceeEEEEcCCeEEEE----eCCeEEEEEcCCce-eeeEEeccCCCcceEEEecCCCceEEE
Q 014977          120 DDHQ--SRCIGEFA--FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLK-LLHQIETLANLRGLCCLSHHSSTSVLA  190 (415)
Q Consensus       120 d~~~--~~~~~~~~--~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~  190 (415)
                      ++..  .+.+.-+.  |...|+++.|+|+..-+.    .|..++.||++... .+..+..-.....-+.+..-. ...+|
T Consensus        97 nlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~-p~vla  175 (1081)
T KOG0309|consen   97 NLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKD-PNVLA  175 (1081)
T ss_pred             hhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccC-cchhh
Confidence            8643  23333333  788999999999876665    68999999997653 344443333333445555432 22343


Q ss_pred             EeCCccCeEEEEEcCC--cceEEEecCccceEEEEeCCC-CCEEEEEeCCCcEEEEEECCCCc--EEEEEecCCCcccEE
Q 014977          191 CPGLQRGQVRIEHFGL--NMIKLINAHDSHIACFTLTLD-GLLLATASTRGTLIRIFNTVDGT--RLQEVRRGVDRAEIY  265 (415)
Q Consensus       191 ~~g~~dg~v~i~~~~~--~~~~~~~~~~~~i~~l~~sp~-g~~l~s~s~dg~~I~vwd~~~~~--~~~~~~~~~~~~~v~  265 (415)
                        .+..+.|.+|+.+.  .++..+++|...|+.++|+.- ...+.+++.|++ |+.||.....  ..+.+.   ...+|+
T Consensus       176 --sshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~t-vkfw~y~kSt~e~~~~vt---t~~piw  249 (1081)
T KOG0309|consen  176 --SSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGT-VKFWDYSKSTTESKRTVT---TNFPIW  249 (1081)
T ss_pred             --hccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCc-eeeecccccccccceecc---ccCcce
Confidence              34667788888764  567788889999999998752 346888999999 9999986543  222332   345777


Q ss_pred             EEEeCCCCC--EEEEEeCCCeEEEEEceec
Q 014977          266 SIALSPNVQ--WLAVASDKGTVHIFSLRVR  293 (415)
Q Consensus       266 ~l~~spdg~--~l~s~s~dg~i~vwd~~~~  293 (415)
                      .-.+-|-|.  ++.---.+..+.+++-++.
T Consensus       250 ~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~  279 (1081)
T KOG0309|consen  250 RGRYLPFGEGYCIMPMVGGNMVPQLRCENS  279 (1081)
T ss_pred             eccccccCceeEeccccCCeeeeeccccch
Confidence            777877443  3332222335666555443

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.63  E-value=2.5e-05  Score=79.06  Aligned_cols=202  Identities=14%  Similarity=0.119  Sum_probs=126.1

Q ss_pred             CCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE--e-CCeEEEEEcCC
Q 014977           85 SGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--L-EHKIYVYSFVD  161 (415)
Q Consensus        85 ~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~-d~~i~iwd~~~  161 (415)
                      .+...++++.|..+...++.+...     |.|.+-|..+......-.....|.+++|+||+..++  . .+++.+.+ .+
T Consensus        66 ~gd~~i~s~~fl~d~~~i~v~~~~-----G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT-~~  139 (1265)
T KOG1920|consen   66 DGDDEIVSVQFLADTNSICVITAL-----GDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMT-KD  139 (1265)
T ss_pred             CCCcceEEEEEecccceEEEEecC-----CcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEe-cc
Confidence            445678888888766554444444     888888877765544444688999999999999888  3 34444432 11


Q ss_pred             ------------------------ceeeeEEeccCC-------------------CcceEEEecCCCceEEEEeC---Cc
Q 014977          162 ------------------------LKLLHQIETLAN-------------------LRGLCCLSHHSSTSVLACPG---LQ  195 (415)
Q Consensus       162 ------------------------~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~l~~~g---~~  195 (415)
                                              |+....+.+...                   ...-..++|-++|.++|++.   ..
T Consensus       140 f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~  219 (1265)
T KOG1920|consen  140 FEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESET  219 (1265)
T ss_pred             ccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccC
Confidence                                    111112221100                   00123477788888887632   12


Q ss_pred             c-CeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEe---CCCcEEEEEECCCCcEEEEE--ecCCCcccEEEEEe
Q 014977          196 R-GQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATAS---TRGTLIRIFNTVDGTRLQEV--RRGVDRAEIYSIAL  269 (415)
Q Consensus       196 d-g~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s---~dg~~I~vwd~~~~~~~~~~--~~~~~~~~v~~l~~  269 (415)
                      + ..|++|+..+..-..-....+.-.+++|-|.|.++++-.   .|+. |.+|.- +|-.-..|  ........|..++|
T Consensus       220 ~~RkirV~drEg~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~-IvffEr-NGL~hg~f~l~~p~de~~ve~L~W  297 (1265)
T KOG1920|consen  220 GTRKIRVYDREGALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSD-IVFFER-NGLRHGEFVLPFPLDEKEVEELAW  297 (1265)
T ss_pred             CceeEEEecccchhhcccCcccccccceeecCCCCeEeeeeecCCCCc-EEEEec-CCccccccccCCcccccchheeee
Confidence            3 789999988543333233334446899999999998753   3556 889974 44332222  22224445899999


Q ss_pred             CCCCCEEEE---EeCCCeEEEEEceecc
Q 014977          270 SPNVQWLAV---ASDKGTVHIFSLRVRV  294 (415)
Q Consensus       270 spdg~~l~s---~s~dg~i~vwd~~~~~  294 (415)
                      +.++..||+   ......|++|-+.+..
T Consensus       298 ns~sdiLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  298 NSNSDILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             cCCCCceeeeecccccceEEEEEecCeE
Confidence            999999987   4444459999887653

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.63  E-value=9e-08  Score=88.21  Aligned_cols=243  Identities=9%  Similarity=0.150  Sum_probs=160.6

Q ss_pred             CCCCCccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCc-----eeEEEeccCCCeeEEEEeeeCCeEEEEecC
Q 014977           33 GHPQTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFK-----ETFRRDLKSGGFRIVEMLFRCNILALVGAG  106 (415)
Q Consensus        33 ~~~~~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~  106 (415)
                      ..-......+|+..|..++--.+..-+++++ |.+|++|.+.+..     .....+++.|...+.++-|-.+...++++.
T Consensus       724 ~~irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD  803 (1034)
T KOG4190|consen  724 DHIRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCD  803 (1034)
T ss_pred             ceeeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeecc
Confidence            3334456689999999988777777778888 9999999997522     123344568888899999999998888864


Q ss_pred             CCCCCCCCeEEEEECCCCCEEEEEE---ccCceeEEEEcCC--eEE-EE---eCCeEEEEEcCCceeeeEEecc--CCC-
Q 014977          107 DNSQYPPTKVIIWDDHQSRCIGEFA---FRSDVRSVKLSRD--RIV-VV---LEHKIYVYSFVDLKLLHQIETL--ANL-  174 (415)
Q Consensus       107 ~d~~~~~~~i~vwd~~~~~~~~~~~---~~~~i~~l~~~~~--~~~-~~---~d~~i~iwd~~~~~~~~~~~~~--~~~-  174 (415)
                             +.|.+||.--++.+..+.   ..+.+..+..-++  ..+ ++   ...+|+++|.+..+....++..  ..+ 
T Consensus       804 -------~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pn  876 (1034)
T KOG4190|consen  804 -------GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPN  876 (1034)
T ss_pred             -------CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCc
Confidence                   899999988887766543   1233333333332  222 23   5789999999888777666543  122 


Q ss_pred             cceEEEecCCCceEEEEeCCccCeEEE-EEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEE-EECCCCcEE
Q 014977          175 RGLCCLSHHSSTSVLACPGLQRGQVRI-EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRI-FNTVDGTRL  252 (415)
Q Consensus       175 ~~~~~~~~~~~~~~l~~~g~~dg~v~i-~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~v-wd~~~~~~~  252 (415)
                      ....+++..+.|..+++ +-.+|.|.+ +.++++.+...+...-....++ .|..+.|+....|.+ +.| |..-+|...
T Consensus       877 a~~R~iaVa~~GN~lAa-~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHs-laVnWhaldgimh  953 (1034)
T KOG4190|consen  877 ALTRAIAVADKGNKLAA-ALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHS-LAVNWHALDGIMH  953 (1034)
T ss_pred             hheeEEEeccCcchhhH-HhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccce-eEeeehhcCCeee
Confidence            34567777777888876 667888877 6666666665554444433343 366677888888888 888 987666655


Q ss_pred             EEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEE
Q 014977          253 QEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFS  289 (415)
Q Consensus       253 ~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd  289 (415)
                      .+.+..  ..+..-+  -.-|.-|+++...+.+.||.
T Consensus       954 ~q~kpp--pepahfl--qsvgpSLV~a~~Gn~lgVYa  986 (1034)
T KOG4190|consen  954 LQDKPP--PEPAHFL--QSVGPSLVTAQNGNILGVYA  986 (1034)
T ss_pred             eccCCC--Ccchhhh--hccCceeEEeccCcEEEEEe
Confidence            454431  1111111  12355677777777788875

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.60  E-value=7.1e-05  Score=66.98  Aligned_cols=242  Identities=12%  Similarity=0.040  Sum_probs=142.6

Q ss_pred             eEEEEEeCCCCEEEEEe-----------CCcEEEEEccCCceeEEEeccCC-CeeE----EEEeeeCCeEEEEecCCCCC
Q 014977           47 LISVSWNQDYGCFAAGT-----------SCGFRIYNCEPFKETFRRDLKSG-GFRI----VEMLFRCNILALVGAGDNSQ  110 (415)
Q Consensus        47 V~~l~~sp~g~~la~g~-----------d~~v~iw~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~l~s~~~d~~  110 (415)
                      .-.+..+||++.+++++           ...|.+||..+.....+..++.. ...+    ..+.++.+++++......|+
T Consensus        38 ~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa  117 (342)
T PF06433_consen   38 LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPA  117 (342)
T ss_dssp             SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSS
T ss_pred             CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCC
Confidence            34567899999888643           23488999999877777666443 2211    12445666655554433322


Q ss_pred             CCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE-eCCeEEEEEcC-CceeeeEEec----cCCCcceEEEecCC
Q 014977          111 YPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFV-DLKLLHQIET----LANLRGLCCLSHHS  184 (415)
Q Consensus       111 ~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~-~~~~~~~~~~----~~~~~~~~~~~~~~  184 (415)
                         ..|.|-|+..++.+.++...+...-.-..+++...+ .||.+.-..+. .|+.......    ...++.....-...
T Consensus       118 ---~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~  194 (342)
T PF06433_consen  118 ---TSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRD  194 (342)
T ss_dssp             ---EEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETT
T ss_pred             ---CeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECC
Confidence               789999999999999888766555555555554433 89999888886 5555432211    11111111111122


Q ss_pred             CceEEEEeCCccCeEEEEEcCCcceEEEec---C----------ccceEEEEeCCCCCEEEEEeCC---C------cEEE
Q 014977          185 STSVLACPGLQRGQVRIEHFGLNMIKLINA---H----------DSHIACFTLTLDGLLLATASTR---G------TLIR  242 (415)
Q Consensus       185 ~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~---~----------~~~i~~l~~sp~g~~l~s~s~d---g------~~I~  242 (415)
                      .+.++..  +.+|.|+--+..+........   -          .+.-.-+++++....|++.-..   +      +.|.
T Consensus       195 ~~~~~F~--Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVW  272 (342)
T PF06433_consen  195 GGRLYFV--SYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVW  272 (342)
T ss_dssp             TTEEEEE--BTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEE
T ss_pred             CCeEEEE--ecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEE
Confidence            2334333  367888875555543322211   0          1223457777755554443221   1      2488


Q ss_pred             EEECCCCcEEEEEecCCCcccEEEEEeCCCCC-EEEEE-eCCCeEEEEEceecccC
Q 014977          243 IFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQ-WLAVA-SDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       243 vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~-~l~s~-s~dg~i~vwd~~~~~~~  296 (415)
                      ++|+.+++.+.++..   ..++.+|..+.|.+ +|++. ..++.|.+||..+++..
T Consensus       273 v~D~~t~krv~Ri~l---~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~  325 (342)
T PF06433_consen  273 VYDLKTHKRVARIPL---EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLV  325 (342)
T ss_dssp             EEETTTTEEEEEEEE---EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EE
T ss_pred             EEECCCCeEEEEEeC---CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEE
Confidence            999999999999884   34688999998766 66554 45789999999999864

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.57  E-value=2e-07  Score=56.23  Aligned_cols=38  Identities=32%  Similarity=0.592  Sum_probs=35.9

Q ss_pred             cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEE
Q 014977          207 NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFN  245 (415)
Q Consensus       207 ~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd  245 (415)
                      +++..+.+|...|++|+|+|++.+|++++.|+. |++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~-i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGT-IRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSE-EEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCE-EEEEC
Confidence            467889999999999999999999999999999 99997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.56  E-value=1.7e-06  Score=77.04  Aligned_cols=152  Identities=15%  Similarity=0.074  Sum_probs=103.1

Q ss_pred             ceEEEEEeCCCCEEEEEe-CCcEEEEEccCCce----eEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEE
Q 014977           46 ELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE----TFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD  120 (415)
Q Consensus        46 ~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd  120 (415)
                      .+..+..++.+++||++. +....++++....+    .....+......+..+............++.     ..+.+|.
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~-----~~~di~s  138 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDV-----YSFDILS  138 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCc-----eeeeeec
Confidence            445566788999999988 66666776654332    1122223334445555555555666666655     7888888


Q ss_pred             CCCCCEEEEEEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEE-eccCCCcceEEEecCCCceEEEEeCCcc
Q 014977          121 DHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQI-ETLANLRGLCCLSHHSSTSVLACPGLQR  196 (415)
Q Consensus       121 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~d  196 (415)
                      ...+.+.-.+.|-..+.+++++||.++++   .|.+|+|-....--.+..+ -+|..-+..+++..  +. .|+ +|+.|
T Consensus       139 ~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~--~~-~Ll-S~sGD  214 (390)
T KOG3914|consen  139 ADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD--NY-LLL-SGSGD  214 (390)
T ss_pred             ccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc--Cc-eee-ecCCC
Confidence            77788887888999999999999999988   6889998877655555444 45776444444443  32 344 47789


Q ss_pred             CeEEEEEcCC
Q 014977          197 GQVRIEHFGL  206 (415)
Q Consensus       197 g~v~i~~~~~  206 (415)
                      +++++|++..
T Consensus       215 ~tlr~Wd~~s  224 (390)
T KOG3914|consen  215 KTLRLWDITS  224 (390)
T ss_pred             CcEEEEeccc
Confidence            9999999765

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.56  E-value=2.7e-05  Score=66.86  Aligned_cols=197  Identities=13%  Similarity=0.066  Sum_probs=104.8

Q ss_pred             CCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEec-----cCCCeeEEEEeeeCC-------eEEEEecCCCCC
Q 014977           44 EIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDL-----KSGGFRIVEMLFRCN-------ILALVGAGDNSQ  110 (415)
Q Consensus        44 ~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-------~~~l~s~~~d~~  110 (415)
                      ...=..++||||+.+||.+. .|.|++||+... .++....     ..-...+..+.|..-       ..+++-.- .  
T Consensus        43 ~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y-~--  118 (282)
T PF15492_consen   43 NPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINY-R--  118 (282)
T ss_pred             CchheEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEec-c--
Confidence            33467899999999999999 999999999752 2222111     011234444555431       12333221 1  


Q ss_pred             CCCCeEEEEECC-----CCCEEEEEE----ccCceeEEEEcCCeEEEEeCCeEEEEEcCCceeeeEEeccCCCcceEEEe
Q 014977          111 YPPTKVIIWDDH-----QSRCIGEFA----FRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGLCCLS  181 (415)
Q Consensus       111 ~~~~~i~vwd~~-----~~~~~~~~~----~~~~i~~l~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  181 (415)
                         |.++-|-+.     ..+....+.    +...|.++.++|..++++..|.-.-   +++.    -.  ....++.++.
T Consensus       119 ---G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~---~~~~----s~--a~~~GLtaWR  186 (282)
T PF15492_consen  119 ---GQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN---QDGM----SK--ASSCGLTAWR  186 (282)
T ss_pred             ---ceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC---CCcc----cc--ccccCceEEE
Confidence               666666542     223344444    3678999999999777661111000   0000    00  0011222222


Q ss_pred             cCCCceEEE-EeCCccCeE------EEEEcCCcceEEE-ecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEE
Q 014977          182 HHSSTSVLA-CPGLQRGQV------RIEHFGLNMIKLI-NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQ  253 (415)
Q Consensus       182 ~~~~~~~l~-~~g~~dg~v------~i~~~~~~~~~~~-~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~  253 (415)
                      .-.+..+.. +....++..      .++..-....... ......|..|.+||||++||+...+|. |.+|++.+-+...
T Consensus       187 iL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~-lsLW~iPsL~~~~  265 (282)
T PF15492_consen  187 ILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGS-LSLWEIPSLRLQR  265 (282)
T ss_pred             EcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCe-EEEEecCcchhhc
Confidence            211111111 111111111      1111111111111 224678999999999999999999999 9999999887776


Q ss_pred             EEec
Q 014977          254 EVRR  257 (415)
Q Consensus       254 ~~~~  257 (415)
                      .+..
T Consensus       266 ~W~~  269 (282)
T PF15492_consen  266 SWKQ  269 (282)
T ss_pred             ccch
Confidence            6654

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.53  E-value=1.3e-06  Score=73.36  Aligned_cols=109  Identities=18%  Similarity=0.193  Sum_probs=74.7

Q ss_pred             eEEEecCCCceEEEEeCCccCeEEEEEcCCc--ceEEEecCccceEEEEeCC-CCCEEEEEeCCCcEEEEEECCCCcEEE
Q 014977          177 LCCLSHHSSTSVLACPGLQRGQVRIEHFGLN--MIKLINAHDSHIACFTLTL-DGLLLATASTRGTLIRIFNTVDGTRLQ  253 (415)
Q Consensus       177 ~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~--~~~~~~~~~~~i~~l~~sp-~g~~l~s~s~dg~~I~vwd~~~~~~~~  253 (415)
                      +.++..+|....++++|+.||.+-+|+.+..  +...+.+|+.+|+.+-|+| ++..|+++++||. +.-||..+ +.+.
T Consensus       182 v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGs-lw~wdas~-~~l~  259 (319)
T KOG4714|consen  182 VTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGS-LWHWDAST-TFLS  259 (319)
T ss_pred             chhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCc-EEEEcCCC-ceEE
Confidence            4444445544556667999999999887753  4556789999999999999 6678999999999 99999753 2221


Q ss_pred             E---------------------EecC--CCcccEEEEEeCCCCCEEEEEeCCCeEEEEE
Q 014977          254 E---------------------VRRG--VDRAEIYSIALSPNVQWLAVASDKGTVHIFS  289 (415)
Q Consensus       254 ~---------------------~~~~--~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd  289 (415)
                      .                     +..-  .....|+  .|.--|..|++|++-+.|++++
T Consensus       260 i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~Sin--sfDV~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  260 ISNQASVISSWLSGDPVKSRIEITSLLPSRSLSIN--SFDVLGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             ecCccccccccccCCcccceEeeeccccccceeee--eeeccCceEEeccccceEEEec
Confidence            0                     0000  0001122  2344577899999989898875

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.52  E-value=1.7e-05  Score=76.51  Aligned_cols=244  Identities=14%  Similarity=0.150  Sum_probs=160.0

Q ss_pred             cCceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCC---------ceEEEEeCCccCeEEEE
Q 014977          133 RSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSS---------TSVLACPGLQRGQVRIE  202 (415)
Q Consensus       133 ~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~~g~~dg~v~i~  202 (415)
                      ...-.++.|+|.|.+.. ....|.+.|..+.+.++.+..|...+..+.|++.+-         ...+++++...|.|.+|
T Consensus        15 ~sN~~A~Dw~~~GLiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~   94 (1062)
T KOG1912|consen   15 RSNRNAADWSPSGLIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV   94 (1062)
T ss_pred             cccccccccCccceEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence            34466789999998877 778899999999999999999988777777776431         33455568889999998


Q ss_pred             EcCCc-ceEEEecCccceEEEEeCC---CC-CEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCC-CCCEE
Q 014977          203 HFGLN-MIKLINAHDSHIACFTLTL---DG-LLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSP-NVQWL  276 (415)
Q Consensus       203 ~~~~~-~~~~~~~~~~~i~~l~~sp---~g-~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~l  276 (415)
                      +.... .+..+..|..++..++|-+   +. .+|++-..... |.+|+..+|+.+.+...  ......++.+.| |.+.+
T Consensus        95 d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~-lvLwntdtG~k~Wk~~y--s~~iLs~f~~DPfd~rh~  171 (1062)
T KOG1912|consen   95 DFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSST-LVLWNTDTGEKFWKYDY--SHEILSCFRVDPFDSRHF  171 (1062)
T ss_pred             EehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcE-EEEEEccCCceeecccc--CCcceeeeeeCCCCcceE
Confidence            76654 4555677888999999875   33 35666666677 99999999999887765  334566789998 77888


Q ss_pred             EEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCC---CCCCCCCCcc---cccccc------cCc
Q 014977          277 AVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISP---STGANPGSSL---SFMRGV------LPK  344 (415)
Q Consensus       277 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~---~~~~~~------~~~  344 (415)
                      ..-+..|.+.+-+.-.-++..          -+...+-|+++++++-..   ...++..+.-   .+++.+      .|.
T Consensus       172 ~~l~s~g~vl~~~~l~~sep~----------~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~  241 (1062)
T KOG1912|consen  172 CVLGSKGFVLSCKDLGLSEPD----------VPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPH  241 (1062)
T ss_pred             EEEccCceEEEEeccCCCCCC----------CCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChh
Confidence            888888888777765433221          122234455554432222   1111111110   011111      111


Q ss_pred             --------------cccc--ccceEEEEeCCCceEEEEecCC---CEEEEEEeCCcEEEEEEec
Q 014977          345 --------------YFSS--EWSFAQFHIPEVTHFIAAFGSQ---NTVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       345 --------------~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~dg~~~~~~~~~  389 (415)
                                    .|+-  +.....+.++.+....+.|-|+   +.+++.=.||.+-+|.--+
T Consensus       242 ~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  242 WRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             hhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence                          1111  2233445566666666777776   7799999999999996554

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.51  E-value=9.5e-05  Score=64.81  Aligned_cols=173  Identities=14%  Similarity=0.100  Sum_probs=107.0

Q ss_pred             CCeEEEEECCCCCEEEEEEccC---ceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCce
Q 014977          113 PTKVIIWDDHQSRCIGEFAFRS---DVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS  187 (415)
Q Consensus       113 ~~~i~vwd~~~~~~~~~~~~~~---~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (415)
                      ++.|..||..+|+.+.......   ......+..++.+++  .++.|+.||..+|+.+..+..... ..... ... ++.
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~-~~~~~-~~~-~~~   78 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP-ISGAP-VVD-GGR   78 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSC-GGSGE-EEE-TTE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccc-cccee-eec-ccc
Confidence            3899999999999999998532   222223434455554  789999999999999988876332 22211 222 223


Q ss_pred             EEEEeCCccCeEEEEE-cCCcceEEE-ecCc---cceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcc
Q 014977          188 VLACPGLQRGQVRIEH-FGLNMIKLI-NAHD---SHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRA  262 (415)
Q Consensus       188 ~l~~~g~~dg~v~i~~-~~~~~~~~~-~~~~---~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~  262 (415)
                      +++.  ..++.++.++ .+++.+... ....   ..........++..++.+..++. |..+|.++|+.+..........
T Consensus        79 v~v~--~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-l~~~d~~tG~~~w~~~~~~~~~  155 (238)
T PF13360_consen   79 VYVG--TSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGK-LVALDPKTGKLLWKYPVGEPRG  155 (238)
T ss_dssp             EEEE--ETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSE-EEEEETTTTEEEEEEESSTT-S
T ss_pred             cccc--cceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCc-EEEEecCCCcEEEEeecCCCCC
Confidence            3333  2566777766 667776663 3221   11112222224778888888999 9999999999988887632111


Q ss_pred             --c------E-EEEEeCCCCCEEEEEeCCCe-EEEEEceecc
Q 014977          263 --E------I-YSIALSPNVQWLAVASDKGT-VHIFSLRVRV  294 (415)
Q Consensus       263 --~------v-~~l~~spdg~~l~s~s~dg~-i~vwd~~~~~  294 (415)
                        .      + ..+.+. ++ .++.++.++. +.+ |+.+++
T Consensus       156 ~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~-d~~tg~  194 (238)
T PF13360_consen  156 SSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAV-DLATGE  194 (238)
T ss_dssp             S--EEEETTEEEEEECC-TT-EEEEECCTSSEEEE-ETTTTE
T ss_pred             CcceeeecccccceEEE-CC-EEEEEcCCCeEEEE-ECCCCC
Confidence              1      1 233333 44 6777777775 555 888887

...

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.51  E-value=1e-06  Score=84.09  Aligned_cols=238  Identities=13%  Similarity=0.111  Sum_probs=152.1

Q ss_pred             ceEEEEEeCCC--CEEEEE-eCCcEEEEEccC-CceeEEEeccCCCeeEEEEeeeCCe-EEEEecCCCCCCCCCeEEEEE
Q 014977           46 ELISVSWNQDY--GCFAAG-TSCGFRIYNCEP-FKETFRRDLKSGGFRIVEMLFRCNI-LALVGAGDNSQYPPTKVIIWD  120 (415)
Q Consensus        46 ~V~~l~~sp~g--~~la~g-~d~~v~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~~~~~~i~vwd  120 (415)
                      .|-.+.|+|.-  .+-++. +...-.+|++.. ........+++|...++.+.|.++. ..+++++.|     ..+..||
T Consensus        69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvd-----t~vh~wd  143 (1081)
T KOG0309|consen   69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVD-----TYVHAWD  143 (1081)
T ss_pred             hhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeecccc-----ccceeee
Confidence            36667777643  344444 466677898853 3344555677999999999999865 577788877     9999999


Q ss_pred             CCCCC-EEEEEE-ccCceeEEEEcC-CeEEEE--eCCeEEEEEcCCc-eeeeEEeccCCCcceEEEecCCCceEEEEeCC
Q 014977          121 DHQSR-CIGEFA-FRSDVRSVKLSR-DRIVVV--LEHKIYVYSFVDL-KLLHQIETLANLRGLCCLSHHSSTSVLACPGL  194 (415)
Q Consensus       121 ~~~~~-~~~~~~-~~~~i~~l~~~~-~~~~~~--~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  194 (415)
                      ++.-. .+.... -......++|+. +...++  ..+.|.+||++.+ ..+..++++...+..+.+.-.-.+..  .+.+
T Consensus       144 ~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~--~s~~  221 (1081)
T KOG0309|consen  144 MRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEI--MSSS  221 (1081)
T ss_pred             ccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhh--cccC
Confidence            87753 444443 345566788875 445555  5778999999765 56667777655333333322222222  3567


Q ss_pred             ccCeEEEEEcCCcc--eEEEecCccceEEEEeCCCCCEEEE--EeCCCcEEEE---------EECCCC-cEEEEEecCCC
Q 014977          195 QRGQVRIEHFGLNM--IKLINAHDSHIACFTLTLDGLLLAT--ASTRGTLIRI---------FNTVDG-TRLQEVRRGVD  260 (415)
Q Consensus       195 ~dg~v~i~~~~~~~--~~~~~~~~~~i~~l~~sp~g~~l~s--~s~dg~~I~v---------wd~~~~-~~~~~~~~~~~  260 (415)
                      .|++|+.|+.....  -........+|..-.+-|-|.-.++  .-.+.. +.+         |+..++ +++++|.+  |
T Consensus       222 ~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~-v~~~~c~n~d~e~n~~~~~~pVh~F~G--H  298 (1081)
T KOG0309|consen  222 NDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNM-VPQLRCENSDLEWNVFDLNTPVHTFVG--H  298 (1081)
T ss_pred             CCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCee-eeeccccchhhhhccccCCcceeeecC--c
Confidence            89999999877533  2223344567777777775442222  111112 333         333333 57888988  7


Q ss_pred             cccEEEEEeCCCC----------CEEEEEeCCCeEEEEEceec
Q 014977          261 RAEIYSIALSPNV----------QWLAVASDKGTVHIFSLRVR  293 (415)
Q Consensus       261 ~~~v~~l~~spdg----------~~l~s~s~dg~i~vwd~~~~  293 (415)
                      ...|....|-..+          -.|++-+.|.++++|.+.+.
T Consensus       299 ~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~  341 (1081)
T KOG0309|consen  299 DDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ  341 (1081)
T ss_pred             chHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence            7777776664322          26999999999999998763

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.50  E-value=0.0012  Score=62.57  Aligned_cols=85  Identities=19%  Similarity=0.259  Sum_probs=69.6

Q ss_pred             cCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceec
Q 014977          214 AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR  293 (415)
Q Consensus       214 ~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~  293 (415)
                      ...+.+.+++++|+...|+.|+.||. |.+||...+..... +   ..-.++.++|+|+|.++++|+..|.+.+||+.-.
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgS-iiLyD~~~~~t~~~-k---a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGS-IILYDTTRGVTLLA-K---AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCe-EEEEEcCCCeeeee-e---ecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            46788999999999999999999999 99999876643322 2   3345789999999999999999999999999887


Q ss_pred             ccCCCCCCCC
Q 014977          294 VVGEDSSSSL  303 (415)
Q Consensus       294 ~~~~~~~~~~  303 (415)
                      ....++.+++
T Consensus       332 pi~~qLlsEd  341 (545)
T PF11768_consen  332 PIKMQLLSED  341 (545)
T ss_pred             ccceeecccc
Confidence            7655555443

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.49  E-value=0.00021  Score=63.29  Aligned_cols=198  Identities=16%  Similarity=0.128  Sum_probs=123.2

Q ss_pred             EEEeeeC-CeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEcc-C-c-eeEEEEcCCeEEEE--------eCCeEEEEE
Q 014977           91 VEMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFR-S-D-VRSVKLSRDRIVVV--------LEHKIYVYS  158 (415)
Q Consensus        91 ~~~~~~~-~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~-~-~-i~~l~~~~~~~~~~--------~d~~i~iwd  158 (415)
                      ..++.+| ....++.+-.-    -....+||..+++....+... + . --.-.|++||+++.        ..|.|-|||
T Consensus         8 H~~a~~p~~~~avafaRRP----G~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd   83 (305)
T PF07433_consen    8 HGVAAHPTRPEAVAFARRP----GTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYD   83 (305)
T ss_pred             cceeeCCCCCeEEEEEeCC----CcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEE
Confidence            3455566 44555554432    146789999999988877621 1 1 12457999999988        258899999


Q ss_pred             cC-CceeeeEEeccCCCcceEEEecCCCceEEEEe-CC-----ccCe------------EEEEEcCCcceEE--E--ecC
Q 014977          159 FV-DLKLLHQIETLANLRGLCCLSHHSSTSVLACP-GL-----QRGQ------------VRIEHFGLNMIKL--I--NAH  215 (415)
Q Consensus       159 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~-----~dg~------------v~i~~~~~~~~~~--~--~~~  215 (415)
                      .. +.+.+.++..+.-  ..-.+...+++..|+++ |+     ..|.            ++++..+++.+.+  +  .-|
T Consensus        84 ~~~~~~ri~E~~s~GI--GPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~  161 (305)
T PF07433_consen   84 AARGYRRIGEFPSHGI--GPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLH  161 (305)
T ss_pred             CcCCcEEEeEecCCCc--ChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccc
Confidence            98 6677777766543  34444455566444442 22     1122            2223444554444  3  236


Q ss_pred             ccceEEEEeCCCCCEEEEEeCCCc------EEEEEECCCCcEEEEEecC-----CCcccEEEEEeCCCCCEEEEEeC-CC
Q 014977          216 DSHIACFTLTLDGLLLATASTRGT------LIRIFNTVDGTRLQEVRRG-----VDRAEIYSIALSPNVQWLAVASD-KG  283 (415)
Q Consensus       216 ~~~i~~l~~sp~g~~l~s~s~dg~------~I~vwd~~~~~~~~~~~~~-----~~~~~v~~l~~spdg~~l~s~s~-dg  283 (415)
                      ...|..+++.++|..++..-..|.      .|-+++  .++.+..+...     ...+.+-+|++++++.++++.+- -+
T Consensus       162 ~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg  239 (305)
T PF07433_consen  162 QLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGG  239 (305)
T ss_pred             ccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCC
Confidence            778999999999986665544442      244444  33333333321     12357899999999998866554 56


Q ss_pred             eEEEEEceecccC
Q 014977          284 TVHIFSLRVRVVG  296 (415)
Q Consensus       284 ~i~vwd~~~~~~~  296 (415)
                      .+.+||..+++-.
T Consensus       240 ~~~~~d~~tg~~~  252 (305)
T PF07433_consen  240 RVAVWDAATGRLL  252 (305)
T ss_pred             EEEEEECCCCCEe
Confidence            8999999998743

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.38  E-value=1.2e-06  Score=76.57  Aligned_cols=142  Identities=15%  Similarity=0.127  Sum_probs=109.4

Q ss_pred             CCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCC-----CEEEEE
Q 014977           56 YGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQS-----RCIGEF  130 (415)
Q Consensus        56 g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~-----~~~~~~  130 (415)
                      |-.+++|.+..+-+-+++++-..   .| .....|.+..|...+.++..|...     |.|.++|++.+     .+...+
T Consensus       225 gyhfs~G~sqqv~L~nvetg~~q---sf-~sksDVfAlQf~~s~nLv~~GcRn-----geI~~iDLR~rnqG~~~~a~rl  295 (425)
T KOG2695|consen  225 GYHFSVGLSQQVLLTNVETGHQQ---SF-QSKSDVFALQFAGSDNLVFNGCRN-----GEIFVIDLRCRNQGNGWCAQRL  295 (425)
T ss_pred             eeeecccccceeEEEEeeccccc---cc-ccchhHHHHHhcccCCeeEecccC-----CcEEEEEeeecccCCCcceEEE
Confidence            44566777888999999875432   23 356667788888877777777766     99999998764     567777


Q ss_pred             EccCceeEEEEcC-CeEEEE---eCCeEEEEEcCCcee---eeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEE
Q 014977          131 AFRSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDLKL---LHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEH  203 (415)
Q Consensus       131 ~~~~~i~~l~~~~-~~~~~~---~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~  203 (415)
                      -|...|+++..-. +++.+.   .+|+|++||++--++   +.++.+|.+.....-+..++....+++ +++|...+||.
T Consensus       296 yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s-~GdDcytRiWs  374 (425)
T KOG2695|consen  296 YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFS-VGDDCYTRIWS  374 (425)
T ss_pred             EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEE-ccCeeEEEEEe
Confidence            7999999998766 555554   799999999976666   889999988777777888887777776 56899999998


Q ss_pred             cCCc
Q 014977          204 FGLN  207 (415)
Q Consensus       204 ~~~~  207 (415)
                      ....
T Consensus       375 l~~g  378 (425)
T KOG2695|consen  375 LDSG  378 (425)
T ss_pred             cccC
Confidence            8743

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.35  E-value=2.4e-06  Score=74.68  Aligned_cols=111  Identities=14%  Similarity=0.120  Sum_probs=82.6

Q ss_pred             EEecCCCceEEEEeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC-----cEEE
Q 014977          179 CLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG-----TRLQ  253 (415)
Q Consensus       179 ~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~-----~~~~  253 (415)
                      +++.+-.+.. +++| .+-.|.+-+......+.+. ..+.|.++.|...+.++..|..+|. |..+|++.+     .+..
T Consensus       218 awSlni~gyh-fs~G-~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s~nLv~~GcRnge-I~~iDLR~rnqG~~~~a~  293 (425)
T KOG2695|consen  218 AWSLNIMGYH-FSVG-LSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGE-IFVIDLRCRNQGNGWCAQ  293 (425)
T ss_pred             hhhhccceee-eccc-ccceeEEEEeecccccccc-cchhHHHHHhcccCCeeEecccCCc-EEEEEeeecccCCCcceE
Confidence            4444433434 3334 4555666555555545554 5778889999998999999999999 999999864     4555


Q ss_pred             EEecCCCcccEEEEEeCC-CCCEEEEEeCCCeEEEEEceecccC
Q 014977          254 EVRRGVDRAEIYSIALSP-NVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       254 ~~~~~~~~~~v~~l~~sp-dg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                      .+.   |.+.|+++..-. ++++|++.+.+|.|++||++.-++.
T Consensus       294 rly---h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~  334 (425)
T KOG2695|consen  294 RLY---HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCK  334 (425)
T ss_pred             EEE---cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcc
Confidence            665   788899988766 7899999999999999999988764

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.31  E-value=0.0016  Score=55.49  Aligned_cols=108  Identities=8%  Similarity=-0.041  Sum_probs=71.2

Q ss_pred             CCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccC
Q 014977           56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRS  134 (415)
Q Consensus        56 g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~  134 (415)
                      ..++++|+ .+.+.--|..++....+..+ +.......+. -.|  +++-|...     +.+.+.+.++|..+..+...+
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgd--fVV~GCy~-----g~lYfl~~~tGs~~w~f~~~~   93 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGD--FVVLGCYS-----GGLYFLCVKTGSQIWNFVILE   93 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECC--EEEEEEcc-----CcEEEEEecchhheeeeeehh
Confidence            45667777 88888888888777666555 3333333333 222  24444444     999999999998888887544


Q ss_pred             ceeE-EEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccC
Q 014977          135 DVRS-VKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLA  172 (415)
Q Consensus       135 ~i~~-l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~  172 (415)
                      .|.. ....+++.++.   .|++.+..|..+..++...+...
T Consensus        94 ~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG  135 (354)
T KOG4649|consen   94 TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGG  135 (354)
T ss_pred             hhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCC
Confidence            4443 23455555554   79999999998888877665443

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.31  E-value=0.00026  Score=71.98  Aligned_cols=193  Identities=13%  Similarity=0.042  Sum_probs=120.4

Q ss_pred             CceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEEC--
Q 014977           45 IELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD--  121 (415)
Q Consensus        45 ~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~--  121 (415)
                      +.|.++.|..+...++.+. .|.|.+-|.++.......   .-..+|.++.|++|...++-....     +++.+-.-  
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg---~vd~GI~aaswS~Dee~l~liT~~-----~tll~mT~~f  140 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVG---NVDNGISAASWSPDEELLALITGR-----QTLLFMTKDF  140 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceeeee---eccCceEEEeecCCCcEEEEEeCC-----cEEEEEeccc
Confidence            6899999999998888888 999988888765443322   446678888999987655444332     44444321  


Q ss_pred             --CC-------------------CCEEEEEE----------------------ccCceeEEEEcCCeEEEE-------eC
Q 014977          122 --HQ-------------------SRCIGEFA----------------------FRSDVRSVKLSRDRIVVV-------LE  151 (415)
Q Consensus       122 --~~-------------------~~~~~~~~----------------------~~~~i~~l~~~~~~~~~~-------~d  151 (415)
                        -.                   |+....+.                      ....=..|.|-.||.+++       .+
T Consensus       141 ~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~  220 (1265)
T KOG1920|consen  141 EPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETG  220 (1265)
T ss_pred             cchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCC
Confidence              00                   11001111                      001123488999998887       34


Q ss_pred             -CeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeC--CccCeEEEEEcCCcceEE----EecCccceEEEEe
Q 014977          152 -HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG--LQRGQVRIEHFGLNMIKL----INAHDSHIACFTL  224 (415)
Q Consensus       152 -~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g--~~dg~v~i~~~~~~~~~~----~~~~~~~i~~l~~  224 (415)
                       ..|+|||-+ |.+-..-.....  .-.+++|-|.|..+++..  ..++.|.++..++-.-..    +......+..++|
T Consensus       221 ~RkirV~drE-g~Lns~se~~~~--l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~W  297 (1265)
T KOG1920|consen  221 TRKIRVYDRE-GALNSTSEPVEG--LQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAW  297 (1265)
T ss_pred             ceeEEEeccc-chhhcccCcccc--cccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeee
Confidence             799999965 433322222222  234566666777777654  245567777777633222    2334455899999


Q ss_pred             CCCCCEEEE---EeCCCcEEEEEECCCC
Q 014977          225 TLDGLLLAT---ASTRGTLIRIFNTVDG  249 (415)
Q Consensus       225 sp~g~~l~s---~s~dg~~I~vwd~~~~  249 (415)
                      +.++..||+   ...... |++|-+.+-
T Consensus       298 ns~sdiLAv~~~~~e~~~-v~lwt~~Ny  324 (1265)
T KOG1920|consen  298 NSNSDILAVVTSNLENSL-VQLWTTGNY  324 (1265)
T ss_pred             cCCCCceeeeecccccce-EEEEEecCe
Confidence            999999987   555556 999987654

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.30  E-value=0.00081  Score=63.78  Aligned_cols=223  Identities=17%  Similarity=0.148  Sum_probs=121.5

Q ss_pred             EEEEEeCCCCEEEEEeCC------------cEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCe
Q 014977           48 ISVSWNQDYGCFAAGTSC------------GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK  115 (415)
Q Consensus        48 ~~l~~sp~g~~la~g~d~------------~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~  115 (415)
                      ..++.+|.|..+|...|.            .|+||+... +.+....+..  ..++.+.|..+..+++...+      |.
T Consensus        32 ~~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG-~ll~~i~w~~--~~iv~~~wt~~e~LvvV~~d------G~  102 (410)
T PF04841_consen   32 YIVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSG-KLLSSIPWDS--GRIVGMGWTDDEELVVVQSD------GT  102 (410)
T ss_pred             eeEEEcCCCceEEEEecCcccccccCCCCcEEEEECCCC-CEeEEEEECC--CCEEEEEECCCCeEEEEEcC------CE
Confidence            345667888888877644            588888764 3344444423  78899999887666655443      99


Q ss_pred             EEEEECCCCCEEEEEE----------ccCceeEEEEcCCeEEEE-eCCeEEEEEcCCce-eeeEEeccCCCcceEEEecC
Q 014977          116 VIIWDDHQSRCIGEFA----------FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLK-LLHQIETLANLRGLCCLSHH  183 (415)
Q Consensus       116 i~vwd~~~~~~~~~~~----------~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~  183 (415)
                      ++++|+. |+.  .+.          ....+....+..+|..+. .++.+++..-.... ....+....  .......+.
T Consensus       103 v~vy~~~-G~~--~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p--~~~~~~~~~  177 (410)
T PF04841_consen  103 VRVYDLF-GEF--QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVVNNIDEPVKLRRLPEIP--GLWTKFHWW  177 (410)
T ss_pred             EEEEeCC-Cce--eechhhhccccCcccccccccccCCCCEEEECCCCeEEEEeCccccchhhccccCC--Ccccccccc
Confidence            9999975 443  222          112222334455776665 55555554422211 111111100  001101111


Q ss_pred             CCceEEEEeCCccCeEEEEEcCCcceEEEec-------CccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEe
Q 014977          184 SSTSVLACPGLQRGQVRIEHFGLNMIKLINA-------HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVR  256 (415)
Q Consensus       184 ~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~-------~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~  256 (415)
                      +....+.. -..++.+.+....+..+..+..       ..+++..|++||+|++||.-..+|. +.|....-.+.+.++.
T Consensus       178 ~~~~~i~~-l~~~~~~~i~~~~g~~i~~i~~~~~~~i~~~~~i~~iavSpng~~iAl~t~~g~-l~v~ssDf~~~~~e~~  255 (410)
T PF04841_consen  178 PSWTVIPL-LSSDRVVEILLANGETIYIIDENSFKQIDSDGPIIKIAVSPNGKFIALFTDSGN-LWVVSSDFSEKLCEFD  255 (410)
T ss_pred             cccccceE-eecCcceEEEEecCCEEEEEEccccccccCCCCeEEEEECCCCCEEEEEECCCC-EEEEECcccceeEEee
Confidence            10000000 0112223332222222222222       2368999999999999999999999 9998876666776766


Q ss_pred             cCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEE
Q 014977          257 RGVDRAEIYSIALSPNVQWLAVASDKGTVHIFS  289 (415)
Q Consensus       257 ~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd  289 (415)
                      .. .......|.|.-+...++.-  ...|.+..
T Consensus       256 ~~-~~~~p~~~~WCG~dav~l~~--~~~l~lvg  285 (410)
T PF04841_consen  256 TD-SKSPPKQMAWCGNDAVVLSW--EDELLLVG  285 (410)
T ss_pred             cC-cCCCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence            53 23466788888765444333  44566655

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.30  E-value=0.00027  Score=67.18  Aligned_cols=222  Identities=14%  Similarity=0.168  Sum_probs=119.8

Q ss_pred             CCCCceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEEC
Q 014977           42 VDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD  121 (415)
Q Consensus        42 ~h~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~  121 (415)
                      ...-....++++|+|++++++++|...||.........       ......+.|.+++.+.+-.. .     +.|.++.-
T Consensus        30 ~~~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~-------~G~g~~~vw~~~n~yAv~~~-~-----~~I~I~kn   96 (443)
T PF04053_consen   30 SCEIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKA-------FGSGLSFVWSSRNRYAVLES-S-----STIKIYKN   96 (443)
T ss_dssp             E-SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEE-------EEE-SEEEE-TSSEEEEE-T-T-----S-EEEEET
T ss_pred             CCCcCCeeEEECCCCCEEEEEcCCEEEEEEccCCcccc-------cCceeEEEEecCccEEEEEC-C-----CeEEEEEc
Confidence            34445789999999999999889999999854433221       12344567777666555544 3     78888642


Q ss_pred             CCCCEEEEEEccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeE
Q 014977          122 HQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQV  199 (415)
Q Consensus       122 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v  199 (415)
                      -+.+....+.....+..|-.   |.+++  .++.|.+||+.+++.+..+...    .+..+.|++++.+++..+  +..+
T Consensus        97 ~~~~~~k~i~~~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~~i~v~----~vk~V~Ws~~g~~val~t--~~~i  167 (443)
T PF04053_consen   97 FKNEVVKSIKLPFSVEKIFG---GNLLGVKSSDFICFYDWETGKLIRRIDVS----AVKYVIWSDDGELVALVT--KDSI  167 (443)
T ss_dssp             TEE-TT-----SS-EEEEE----SSSEEEEETTEEEEE-TTT--EEEEESS-----E-EEEEE-TTSSEEEEE---S-SE
T ss_pred             CccccceEEcCCcccceEEc---CcEEEEECCCCEEEEEhhHcceeeEEecC----CCcEEEEECCCCEEEEEe--CCeE
Confidence            23332233443333444443   55555  6677999999999999888643    245667777788888764  4567


Q ss_pred             EEEEcCCc------------ceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEE
Q 014977          200 RIEHFGLN------------MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSI  267 (415)
Q Consensus       200 ~i~~~~~~------------~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l  267 (415)
                      .|...+..            ....+..-...|.+..|..+  .++-.+.. . |+-+  ..|+. ..+..  -..++.=+
T Consensus       168 ~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~-lkYl--~~Ge~-~~i~~--ld~~~yll  238 (443)
T PF04053_consen  168 YILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-H-LKYL--VNGET-GIIAH--LDKPLYLL  238 (443)
T ss_dssp             EEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-E-EEEE--ETTEE-EEEEE---SS--EEE
T ss_pred             EEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-e-EEEE--EcCCc-ceEEE--cCCceEEE
Confidence            77555554            45555544677888888766  33333333 5 6663  34443 23332  23356667


Q ss_pred             EeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977          268 ALSPNVQWLAVASDKGTVHIFSLRVRV  294 (415)
Q Consensus       268 ~~spdg~~l~s~s~dg~i~vwd~~~~~  294 (415)
                      ...+....|.....|+.|..+.+....
T Consensus       239 gy~~~~~~ly~~Dr~~~v~~~~ld~~~  265 (443)
T PF04053_consen  239 GYLPKENRLYLIDRDGNVISYELDLSE  265 (443)
T ss_dssp             EEETTTTEEEEE-TT--EEEEE--HHH
T ss_pred             EEEccCCEEEEEECCCCEEEEEECHHH
Confidence            777877888888899999998876543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.29  E-value=0.0028  Score=61.82  Aligned_cols=230  Identities=13%  Similarity=0.093  Sum_probs=128.5

Q ss_pred             CEEEEEe-CCcEEEEEccCCceeEEEeccCCC---eeEE-EEeeeCCeEEEEecCCCCCC----CCCeEEEEECCCCCEE
Q 014977           57 GCFAAGT-SCGFRIYNCEPFKETFRRDLKSGG---FRIV-EMLFRCNILALVGAGDNSQY----PPTKVIIWDDHQSRCI  127 (415)
Q Consensus        57 ~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~l~s~~~d~~~----~~~~i~vwd~~~~~~~  127 (415)
                      ..++.++ ++.|.-+|.++++.+.+..+....   ..+. ..... ++.+++..... .+    .++.|..+|..+|+.+
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~~~v~vg~~~~-~~~~~~~~g~v~alD~~TG~~~  188 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-KKLVIIGSSGA-EFFACGVRGALRAYDVETGKLL  188 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE-CCEEEEecccc-ccccCCCCcEEEEEECCCCcee
Confidence            4566666 899999999988887776553221   0011 11122 23444432210 00    1388999999999999


Q ss_pred             EEEEcc-Cc--------------------e-eEEEEcC-CeEEEE--eCC------------------eEEEEEcCCcee
Q 014977          128 GEFAFR-SD--------------------V-RSVKLSR-DRIVVV--LEH------------------KIYVYSFVDLKL  164 (415)
Q Consensus       128 ~~~~~~-~~--------------------i-~~l~~~~-~~~~~~--~d~------------------~i~iwd~~~~~~  164 (415)
                      ..+... ..                    + ....+.+ .+.+++  .++                  .|.-+|..+++.
T Consensus       189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~  268 (488)
T cd00216         189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV  268 (488)
T ss_pred             eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence            887632 10                    0 1233333 344444  333                  799999999999


Q ss_pred             eeEEeccCCCc---------ceEEEe-cCCCceEEEEeCCccCeEEE-EEcCCcceEEEecCccceEEEEeCCCCCEEEE
Q 014977          165 LHQIETLANLR---------GLCCLS-HHSSTSVLACPGLQRGQVRI-EHFGLNMIKLINAHDSHIACFTLTLDGLLLAT  233 (415)
Q Consensus       165 ~~~~~~~~~~~---------~~~~~~-~~~~~~~l~~~g~~dg~v~i-~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s  233 (415)
                      +..++......         .+.... .+.....+++.++.+|.+.. +..+++.+......   ...++.+| + .++.
T Consensus       269 ~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~-~vyv  343 (488)
T cd00216         269 KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-G-LVYL  343 (488)
T ss_pred             EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-c-eEEE
Confidence            88775322111         011111 12222223444667888776 55566665544321   11233344 2 2322


Q ss_pred             E------------------eCCCcEEEEEECCCCcEEEEEecCCCc------ccE--EEEEeCCCCCEEEEEeCCCeEEE
Q 014977          234 A------------------STRGTLIRIFNTVDGTRLQEVRRGVDR------AEI--YSIALSPNVQWLAVASDKGTVHI  287 (415)
Q Consensus       234 ~------------------s~dg~~I~vwd~~~~~~~~~~~~~~~~------~~v--~~l~~spdg~~l~s~s~dg~i~v  287 (415)
                      +                  ..+|. +.-.|+.+|+.+.+.....+.      .+.  ..+.  ..+..|++++.||.|+.
T Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~G~-l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~a  420 (488)
T cd00216         344 GAFHIPLGLPPQKKKRCKKPGKGG-LAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFRA  420 (488)
T ss_pred             ccccccccCcccccCCCCCCCceE-EEEEeCCCCcEeeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCCeEEE
Confidence            2                  23577 889999999988777643111      111  1122  24578888999999999


Q ss_pred             EEceecccC
Q 014977          288 FSLRVRVVG  296 (415)
Q Consensus       288 wd~~~~~~~  296 (415)
                      +|.++|+..
T Consensus       421 ld~~tG~~l  429 (488)
T cd00216         421 FDATTGKEL  429 (488)
T ss_pred             EECCCCcee
Confidence            999999843

The alignment model contains an 8-bladed beta-propeller.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.24  E-value=0.0023  Score=58.88  Aligned_cols=175  Identities=11%  Similarity=0.128  Sum_probs=105.1

Q ss_pred             CeEEEEECCCCCEEEEEE--ccCceeEEE---EcCC----eEEEE------------eC-CeEEEEEcCCc----eeeeE
Q 014977          114 TKVIIWDDHQSRCIGEFA--FRSDVRSVK---LSRD----RIVVV------------LE-HKIYVYSFVDL----KLLHQ  167 (415)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~--~~~~i~~l~---~~~~----~~~~~------------~d-~~i~iwd~~~~----~~~~~  167 (415)
                      ..|++.|..+.+.+..+.  ....+.+++   +..+    ..+++            .. |.|.++++...    ..+..
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            578999988888887776  344455444   3332    34444            12 88999999873    23332


Q ss_pred             EeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcc-eEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEEC
Q 014977          168 IETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNM-IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNT  246 (415)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~-~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~  246 (415)
                      +....-...+.++..- ++.++++.   .+.|.++...... +.....+..++........+.+++.|..... +.++..
T Consensus        82 i~~~~~~g~V~ai~~~-~~~lv~~~---g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~s-v~~~~~  156 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF-NGRLVVAV---GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKS-VSLLRY  156 (321)
T ss_dssp             EEEEEESS-EEEEEEE-TTEEEEEE---TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSS-EEEEEE
T ss_pred             EEEEeecCcceEhhhh-CCEEEEee---cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccC-EEEEEE
Confidence            2222222346666665 34455443   4788897766655 5444444443344444444669999998888 887754


Q ss_pred             CC-CcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceec
Q 014977          247 VD-GTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR  293 (415)
Q Consensus       247 ~~-~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~  293 (415)
                      +. ...+..+........++++.|-+++..++.+..+|.+.++.....
T Consensus       157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~  204 (321)
T PF03178_consen  157 DEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPE  204 (321)
T ss_dssp             ETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS
T ss_pred             EccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCC
Confidence            43 333444443324457889999877779999999999999998643

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.22  E-value=0.0037  Score=57.56  Aligned_cols=219  Identities=14%  Similarity=0.200  Sum_probs=122.5

Q ss_pred             CcEEEEEccCCceeEEEeccCCCeeEEE---EeeeCC----eEEEE-ecCC----CCCCCCCeEEEEECCCC-----C--
Q 014977           65 CGFRIYNCEPFKETFRRDLKSGGFRIVE---MLFRCN----ILALV-GAGD----NSQYPPTKVIIWDDHQS-----R--  125 (415)
Q Consensus        65 ~~v~iw~~~~~~~~~~~~~~~~~~~~~~---~~~~~~----~~~l~-s~~~----d~~~~~~~i~vwd~~~~-----~--  125 (415)
                      ..|++.|..+.+.+....+. ....+.+   +.+..+    ..+++ +.+.    +..-..|.|.++++.+.     +  
T Consensus         2 s~i~l~d~~~~~~~~~~~l~-~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~   80 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELE-PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK   80 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEE-TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred             cEEEEEeCCCCeEEEEEECC-CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence            35788888777766666663 3333333   333321    33333 3221    11112289999998884     2  


Q ss_pred             EEEEEEccCceeEEEEcCCeEEEEeCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEE--EE
Q 014977          126 CIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI--EH  203 (415)
Q Consensus       126 ~~~~~~~~~~i~~l~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i--~~  203 (415)
                      .+......++|++++--.+...++.++.|++|++...+.+........+..+.++....+  ++++ |.....+.+  |+
T Consensus        81 ~i~~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~--~I~v-gD~~~sv~~~~~~  157 (321)
T PF03178_consen   81 LIHSTEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKN--YILV-GDAMKSVSLLRYD  157 (321)
T ss_dssp             EEEEEEESS-EEEEEEETTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETT--EEEE-EESSSSEEEEEEE
T ss_pred             EEEEEeecCcceEhhhhCCEEEEeecCEEEEEEccCcccchhhheecceEEEEEEecccc--EEEE-EEcccCEEEEEEE
Confidence            223334789999999885553333899999999977762323323333346677766644  5555 444455555  66


Q ss_pred             cCCcceEEEec--CccceEEEEeCCCCCEEEEEeCCCcEEEEEECCC-------Cc-EEEEEecCCCcccEEEE---EeC
Q 014977          204 FGLNMIKLINA--HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVD-------GT-RLQEVRRGVDRAEIYSI---ALS  270 (415)
Q Consensus       204 ~~~~~~~~~~~--~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~-------~~-~~~~~~~~~~~~~v~~l---~~s  270 (415)
                      .....+..+..  ....++++.|-++++.++.+..+|. +.++....       +. .+...........|+++   .+.
T Consensus       158 ~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gn-l~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~  236 (321)
T PF03178_consen  158 EENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGN-LFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLI  236 (321)
T ss_dssp             TTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSE-EEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS
T ss_pred             ccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCe-EEEEEECCCCcccccccccceeEEEEECCCccceEEEEEee
Confidence            65554444432  3556788888866678999999999 99987752       22 22222211133467777   655


Q ss_pred             CC--CC------EEEEEeCCCeEEEE
Q 014977          271 PN--VQ------WLAVASDKGTVHIF  288 (415)
Q Consensus       271 pd--g~------~l~s~s~dg~i~vw  288 (415)
                      |.  +.      .++.++.+|.|.+.
T Consensus       237 ~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  237 PRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             --SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             ecCCCCcccccceEEEEecCCEEEEE
Confidence            62  22      47888899988843

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.21  E-value=0.00042  Score=67.11  Aligned_cols=166  Identities=6%  Similarity=-0.031  Sum_probs=105.1

Q ss_pred             CeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE-e------CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCc
Q 014977          114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV-L------EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSST  186 (415)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (415)
                      +.+.+.|.++.+...++........+.+++++.++. .      ..++...+..+...+..+...    .+..+  .+++
T Consensus       215 ~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~----~iea~--vkdG  288 (635)
T PRK02888        215 SLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA----RIEEA--VKAG  288 (635)
T ss_pred             EEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH----HHHHh--hhCC
Confidence            778888988888888887777778889999988877 1      123333333222222222111    01111  2244


Q ss_pred             eEEEEeCCccCeEEEEEcCC-----cceEEEecCccceEEEEeCCCCCEEEEEeC-CCcEEEEEECCCCcE---------
Q 014977          187 SVLACPGLQRGQVRIEHFGL-----NMIKLINAHDSHIACFTLTLDGLLLATAST-RGTLIRIFNTVDGTR---------  251 (415)
Q Consensus       187 ~~l~~~g~~dg~v~i~~~~~-----~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~-dg~~I~vwd~~~~~~---------  251 (415)
                      ++... +  ++.|.+.+...     ..+...-.-......+.++|||+++++++. +.. |.|+|+.+.+.         
T Consensus       289 K~~~V-~--gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~t-VSVIDv~k~k~~~~~~~~~~  364 (635)
T PRK02888        289 KFKTI-G--GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPT-VTVIDVRKLDDLFDGKIKPR  364 (635)
T ss_pred             CEEEE-C--CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCc-EEEEEChhhhhhhhccCCcc
Confidence            44433 2  45677754443     233333334455678999999998887765 566 99999987553         


Q ss_pred             ---EEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEcee
Q 014977          252 ---LQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV  292 (415)
Q Consensus       252 ---~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~  292 (415)
                         ..+..-   .......+|+++|....+--.|..|..|++.+
T Consensus       365 ~~vvaevev---GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        365 DAVVAEPEL---GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             ceEEEeecc---CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence               333332   12345788999999888889999999999987

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.19  E-value=1.2e-05  Score=69.36  Aligned_cols=157  Identities=11%  Similarity=0.208  Sum_probs=98.6

Q ss_pred             ccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceee-eE--EeccC-----CCcceEEEecCCCceEEEEeCCccCeEEE
Q 014977          132 FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLL-HQ--IETLA-----NLRGLCCLSHHSSTSVLACPGLQRGQVRI  201 (415)
Q Consensus       132 ~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~-~~--~~~~~-----~~~~~~~~~~~~~~~~l~~~g~~dg~v~i  201 (415)
                      |...|.++.++.|...++  .|-.|.+|++.-.... ..  ++.+.     ..++...+++.... .+.+ .+..|.|++
T Consensus       171 H~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn-~fmY-SsSkG~Ikl  248 (460)
T COG5170         171 HPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCN-VFMY-SSSKGEIKL  248 (460)
T ss_pred             ceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcc-eEEE-ecCCCcEEe
Confidence            788899999999887777  6778999998532211 11  12211     11233344443333 3334 457899999


Q ss_pred             EEcCCc-----ceE------------EEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC-cEEEEEecCC----
Q 014977          202 EHFGLN-----MIK------------LINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG-TRLQEVRRGV----  259 (415)
Q Consensus       202 ~~~~~~-----~~~------------~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~-~~~~~~~~~~----  259 (415)
                      .+.+..     ..+            -+.+-...|..+.|+++|+++++-+.. + |+|||++.. .+++++..+.    
T Consensus       249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-t-vkiwDvnm~k~pikTi~~h~~l~~  326 (460)
T COG5170         249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-T-VKIWDVNMAKNPIKTIPMHCDLMD  326 (460)
T ss_pred             hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-e-EEEEecccccCCceeechHHHHHH
Confidence            554421     111            111223567889999999999876643 5 999999754 4666664310    


Q ss_pred             ------CcccE---EEEEeCCCCCEEEEEeCCCeEEEEEcee
Q 014977          260 ------DRAEI---YSIALSPNVQWLAVASDKGTVHIFSLRV  292 (415)
Q Consensus       260 ------~~~~v---~~l~~spdg~~l~s~s~dg~i~vwd~~~  292 (415)
                            ....|   ..+.||.|.+.+.+|+..+...+|-+.+
T Consensus       327 ~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~s  368 (460)
T COG5170         327 ELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDS  368 (460)
T ss_pred             HHHhhhhccceeeeEEEEecCCcccccccccccceeeecccc
Confidence                  01122   4578999999999999988888887544

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.18  E-value=8.4e-05  Score=62.84  Aligned_cols=72  Identities=14%  Similarity=0.298  Sum_probs=58.4

Q ss_pred             ceEEEEeCCCC-CEEEEEeCCCcEEEEEECCCCcEEE-EEecCCCcccEEEEEeCC-CCCEEEEEeCCCeEEEEEcee
Q 014977          218 HIACFTLTLDG-LLLATASTRGTLIRIFNTVDGTRLQ-EVRRGVDRAEIYSIALSP-NVQWLAVASDKGTVHIFSLRV  292 (415)
Q Consensus       218 ~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~~~~~-~~~~~~~~~~v~~l~~sp-dg~~l~s~s~dg~i~vwd~~~  292 (415)
                      .|.+++-+|.. .++++|+.||. +-+||.+...... .+..  |+.+++.+-|+| ++..|+++++||.+..||-.+
T Consensus       181 ~v~~l~~hp~qq~~v~cgt~dg~-~~l~d~rn~~~p~S~l~a--hk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  181 AVTALCSHPAQQHLVCCGTDDGI-VGLWDARNVAMPVSLLKA--HKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             cchhhhCCcccccEEEEecCCCe-EEEEEcccccchHHHHHH--hhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            48888888855 46778888888 9999998874332 3444  888999999998 677899999999999999775

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.17  E-value=7.5e-05  Score=70.61  Aligned_cols=189  Identities=13%  Similarity=0.071  Sum_probs=121.6

Q ss_pred             CeeEEEEeeeCCeEEEEecCCCCCCCC-CeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE----eC--CeEEEEEc
Q 014977           87 GFRIVEMLFRCNILALVGAGDNSQYPP-TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV----LE--HKIYVYSF  159 (415)
Q Consensus        87 ~~~~~~~~~~~~~~~l~s~~~d~~~~~-~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~----~d--~~i~iwd~  159 (415)
                      ...+..-.|++++..++.....  ... ..+.++++.+++........+.-...+|+|||+.++    .|  -.|+++|+
T Consensus       192 ~~~~~~p~ws~~~~~~~y~~f~--~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl  269 (425)
T COG0823         192 GSLILTPAWSPDGKKLAYVSFE--LGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDL  269 (425)
T ss_pred             CcceeccccCcCCCceEEEEEe--cCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcC
Confidence            3344455667766544332111  011 369999999998888887777777889999999888    33  35888888


Q ss_pred             CCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEE--EEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCC
Q 014977          160 VDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI--EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTR  237 (415)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i--~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d  237 (415)
                      ..+... .+.....  ....-+++|+|..++++.+..|.-.|  .+..+.....+......-..-.|+|||++|+..+..
T Consensus       270 ~~~~~~-~Lt~~~g--i~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~  346 (425)
T COG0823         270 DGKNLP-RLTNGFG--INTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSS  346 (425)
T ss_pred             CCCcce-ecccCCc--cccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEecc
Confidence            766633 3432222  12255677888899988877887666  555566666665554444477899999998877743


Q ss_pred             Cc--EEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCC
Q 014977          238 GT--LIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKG  283 (415)
Q Consensus       238 g~--~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg  283 (415)
                      +.  .|.+.|+.++...+.+..   ......-.|.++|+.+...+..+
T Consensus       347 ~g~~~i~~~~~~~~~~~~~lt~---~~~~e~ps~~~ng~~i~~~s~~~  391 (425)
T COG0823         347 GGQWDIDKNDLASGGKIRILTS---TYLNESPSWAPNGRMIMFSSGQG  391 (425)
T ss_pred             CCceeeEEeccCCCCcEEEccc---cccCCCCCcCCCCceEEEeccCC
Confidence            21  277777777665444442   22344567888888877655443

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.17  E-value=6.8e-05  Score=73.82  Aligned_cols=175  Identities=17%  Similarity=0.251  Sum_probs=119.7

Q ss_pred             EEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE-ccCc
Q 014977           58 CFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSD  135 (415)
Q Consensus        58 ~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~  135 (415)
                      .++-|+ ...+..+|+.+.+......+...+  +.-|  ..++..+.+|...     |+|.+-|..+.+.+.++. |.+.
T Consensus       149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~--v~im--R~Nnr~lf~G~t~-----G~V~LrD~~s~~~iht~~aHs~s  219 (1118)
T KOG1275|consen  149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASG--VTIM--RYNNRNLFCGDTR-----GTVFLRDPNSFETIHTFDAHSGS  219 (1118)
T ss_pred             ceeecchhhheeeeecccceeeeeeeccCCc--eEEE--EecCcEEEeeccc-----ceEEeecCCcCceeeeeeccccc
Confidence            444455 555666777765544433332222  3222  3455667777776     999999999999999998 9999


Q ss_pred             eeEEEEcCCeEEEE----------eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEE--
Q 014977          136 VRSVKLSRDRIVVV----------LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEH--  203 (415)
Q Consensus       136 i~~l~~~~~~~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~--  203 (415)
                      |.++....+-...+          .|.-|+|||++..+.+..+..+..+ ..+.+.|.-.....+  .+..|...+-+  
T Consensus       220 iSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V--~S~sGq~q~vd~~  296 (1118)
T KOG1275|consen  220 ISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAV--TSQSGQFQFVDTA  296 (1118)
T ss_pred             eeeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEE--Eecccceeecccc
Confidence            99888766544433          4788999999998887766655543 455666654444433  34678888733  


Q ss_pred             -cCCc--ceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEE
Q 014977          204 -FGLN--MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFN  245 (415)
Q Consensus       204 -~~~~--~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd  245 (415)
                       ....  .+..+......+..+.++++|+.+|.|..+|. |.+|-
T Consensus       297 ~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~-v~~wa  340 (1118)
T KOG1275|consen  297 TLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGH-VNLWA  340 (1118)
T ss_pred             ccCCCccceeEEccCCCcceeEEecCCCceEEEecccCc-Eeeec
Confidence             2222  23334444566999999999999999999999 99996

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.16  E-value=0.0018  Score=58.52  Aligned_cols=178  Identities=12%  Similarity=0.010  Sum_probs=102.7

Q ss_pred             CeEEEEECCCCCEEEEEEccCceeE-EEEcCCeEEEEeCCeEEEEEcCCceeeeEEecc---CCCcceEEEecCCCceEE
Q 014977          114 TKVIIWDDHQSRCIGEFAFRSDVRS-VKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETL---ANLRGLCCLSHHSSTSVL  189 (415)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~~~~~i~~-l~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l  189 (415)
                      +.|.-|+..+++. ..+.....+.+ +.+...+.+++.+..+++++.+++.....+...   ...........++++.+.
T Consensus        47 ~~i~r~~~~~g~~-~~~~~p~~~~~~~~~d~~g~Lv~~~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~w  125 (307)
T COG3386          47 GRIHRLDPETGKK-RVFPSPGGFSSGALIDAGGRLIACEHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIW  125 (307)
T ss_pred             CeEEEecCCcCce-EEEECCCCcccceeecCCCeEEEEccccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEE
Confidence            7888888776643 33444444444 455667777778888888888666553333211   111223344455566555


Q ss_pred             EEeCC----------ccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCC--C----cEEE
Q 014977          190 ACPGL----------QRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVD--G----TRLQ  253 (415)
Q Consensus       190 ~~~g~----------~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~--~----~~~~  253 (415)
                      +.+-.          .-|.++..+..+..++.+..+-..-+.|+||||++.|+.+......|.-|++..  +    +...
T Consensus       126 fgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~  205 (307)
T COG3386         126 FGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGF  205 (307)
T ss_pred             EeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceE
Confidence            43322          012233333334555556665666789999999988887776543388887652  2    1111


Q ss_pred             EEecCCCcccEEEEEeCCCCCEEEEEeCCC-eEEEEEceecc
Q 014977          254 EVRRGVDRAEIYSIALSPNVQWLAVASDKG-TVHIFSLRVRV  294 (415)
Q Consensus       254 ~~~~~~~~~~v~~l~~spdg~~l~s~s~dg-~i~vwd~~~~~  294 (415)
                      .+.. ...+..-.++...+|.+-+++..+| .|.+|+.+ ++
T Consensus       206 ~~~~-~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~  245 (307)
T COG3386         206 VDFD-EEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GK  245 (307)
T ss_pred             EEcc-CCCCCCCceEEeCCCCEEEecccCCceEEEECCC-Cc
Confidence            1211 1344556677778888765555554 78888877 55

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.15  E-value=0.00032  Score=66.41  Aligned_cols=174  Identities=14%  Similarity=0.057  Sum_probs=112.0

Q ss_pred             CeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE-----eC--CeEEEEEcCCceeeeEEeccCCCcceEEEecCCC
Q 014977          114 TKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-----LE--HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSS  185 (415)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~-----~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (415)
                      ..+.+-|.. +...+.+. ....+..-.|+|++..++     ..  ..++++++.+++....+....   ......++|+
T Consensus       173 ~~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g---~~~~P~fspD  248 (425)
T COG0823         173 YELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNG---NNGAPAFSPD  248 (425)
T ss_pred             ceEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCC---ccCCccCCCC
Confidence            566666644 65555555 456677788999988776     22  469999998887665554222   2344566777


Q ss_pred             ceEEEEeCCccCeEEE--EEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCC-c-EEEEEECCCCcEEEEEecCCCc
Q 014977          186 TSVLACPGLQRGQVRI--EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRG-T-LIRIFNTVDGTRLQEVRRGVDR  261 (415)
Q Consensus       186 ~~~l~~~g~~dg~v~i--~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg-~-~I~vwd~~~~~~~~~~~~~~~~  261 (415)
                      ++.|+++...||...|  .+..++....+....+.-..-.|+|||+.|+-.+..+ . .|.++|.+.+.. ..+..  ..
T Consensus       249 G~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~--~~  325 (425)
T COG0823         249 GSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTF--SG  325 (425)
T ss_pred             CCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeec--cC
Confidence            7888888888888777  4455555555555555555778999999888766543 2 366777765554 33332  11


Q ss_pred             ccEEEEEeCCCCCEEEEEeCC-Ce--EEEEEceecc
Q 014977          262 AEIYSIALSPNVQWLAVASDK-GT--VHIFSLRVRV  294 (415)
Q Consensus       262 ~~v~~l~~spdg~~l~s~s~d-g~--i~vwd~~~~~  294 (415)
                      ..-..-.|+|||++|+..+.. |.  |.+.++.++.
T Consensus       326 ~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         326 GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence            112267899999999877643 43  5555555444

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.10  E-value=0.0004  Score=66.03  Aligned_cols=219  Identities=13%  Similarity=0.104  Sum_probs=116.9

Q ss_pred             CCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE--eCCeEEEEEcCCc
Q 014977           85 SGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDL  162 (415)
Q Consensus        85 ~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~  162 (415)
                      ........+.++|++.+++.+++      |...++.....+..    ..+.-....|.+.+.+.+  ..+.|.|+.--+.
T Consensus        30 ~~~~~p~~ls~npngr~v~V~g~------geY~iyt~~~~r~k----~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~   99 (443)
T PF04053_consen   30 SCEIYPQSLSHNPNGRFVLVCGD------GEYEIYTALAWRNK----AFGSGLSFVWSSRNRYAVLESSSTIKIYKNFKN   99 (443)
T ss_dssp             E-SS--SEEEE-TTSSEEEEEET------TEEEEEETTTTEEE----EEEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE
T ss_pred             CCCcCCeeEEECCCCCEEEEEcC------CEEEEEEccCCccc----ccCceeEEEEecCccEEEEECCCeEEEEEcCcc
Confidence            34445677889999988877665      88888873332221    124455678888888777  4678999743222


Q ss_pred             eeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEE
Q 014977          163 KLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLI  241 (415)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I  241 (415)
                      +....+....   .+-.+-.   |.+|+..+  ++.|.++++.. +.++.+...  +|..+.|+++|.+++..+.+.  +
T Consensus       100 ~~~k~i~~~~---~~~~If~---G~LL~~~~--~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~--i  167 (443)
T PF04053_consen  100 EVVKSIKLPF---SVEKIFG---GNLLGVKS--SDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDS--I  167 (443)
T ss_dssp             -TT-----SS----EEEEE----SSSEEEEE--TTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-S--E
T ss_pred             ccceEEcCCc---ccceEEc---CcEEEEEC--CCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCe--E
Confidence            3322343322   2233333   55666543  45788888774 555555533  489999999999999998775  6


Q ss_pred             EEEECCCC-----------cEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCccc
Q 014977          242 RIFNTVDG-----------TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQST  310 (415)
Q Consensus       242 ~vwd~~~~-----------~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  310 (415)
                      .|++....           .....+..  -...|.+..|..| -++.+ +.. .|+.  +-.|+.+              
T Consensus       168 ~il~~~~~~~~~~~~~g~e~~f~~~~E--~~~~IkSg~W~~d-~fiYt-T~~-~lkY--l~~Ge~~--------------  226 (443)
T PF04053_consen  168 YILKYNLEAVAAIPEEGVEDAFELIHE--ISERIKSGCWVED-CFIYT-TSN-HLKY--LVNGETG--------------  226 (443)
T ss_dssp             EEEEE-HHHHHHBTTTB-GGGEEEEEE--E-S--SEEEEETT-EEEEE--TT-EEEE--EETTEEE--------------
T ss_pred             EEEEecchhcccccccCchhceEEEEE--ecceeEEEEEEcC-EEEEE-cCC-eEEE--EEcCCcc--------------
Confidence            77664322           02222221  1346888889776 33333 333 6766  5555532              


Q ss_pred             ccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977          311 ELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~  389 (415)
                                                                 .++.-+.+.+++.+.++ +++++.-.|+.+..|.++.
T Consensus       227 -------------------------------------------~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~  263 (443)
T PF04053_consen  227 -------------------------------------------IIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDL  263 (443)
T ss_dssp             -------------------------------------------EEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred             -------------------------------------------eEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence                                                       23322356778888886 9999999999999999986

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.10  E-value=0.00014  Score=71.05  Aligned_cols=221  Identities=9%  Similarity=0.094  Sum_probs=129.8

Q ss_pred             EEEEEeCCCCEEEEEe-----CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECC
Q 014977           48 ISVSWNQDYGCFAAGT-----SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH  122 (415)
Q Consensus        48 ~~l~~sp~g~~la~g~-----d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~  122 (415)
                      +-.+|+|...+||+++     .|.|.||- ++++...  .. ..+..+.+++|+|....|+.+-.-     |.+.+|...
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr--~V-t~P~hatSLCWHpe~~vLa~gwe~-----g~~~v~~~~   89 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQR--DV-TYPVHATSLCWHPEEFVLAQGWEM-----GVSDVQKTN   89 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCc--cc-ccceehhhhccChHHHHHhhcccc-----ceeEEEecC
Confidence            4457999999999876     57788884 3333211  11 345566779999999999888776     999999966


Q ss_pred             CCCEEEEE-EccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEec--c--CCCcceEEEecCCCce------E
Q 014977          123 QSRCIGEF-AFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIET--L--ANLRGLCCLSHHSSTS------V  188 (415)
Q Consensus       123 ~~~~~~~~-~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~------~  188 (415)
                      +.+.-... .|+.+|..+.|+++|..+.   .-|.+.+|.......++....  |  ......+++...+++.      .
T Consensus        90 ~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laK  169 (1416)
T KOG3617|consen   90 TTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAK  169 (1416)
T ss_pred             CceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhh
Confidence            55443333 2899999999999999888   457899998753222222111  1  1122344444444321      1


Q ss_pred             EEEeCCccCeEE-EEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEE
Q 014977          189 LACPGLQRGQVR-IEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSI  267 (415)
Q Consensus       189 l~~~g~~dg~v~-i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l  267 (415)
                      .+++|. +.-+- .+++..+....-..|.       =.|+|..+..++.+|+ |+-.|- .|+.....+.   .+. ..+
T Consensus       170 aaVtgD-e~alD~~fnwk~~~a~rs~~ks-------gv~~g~~F~~~~~~Gt-Vyyvdq-~g~~~~V~k~---dS~-vQm  235 (1416)
T KOG3617|consen  170 AAVTGD-ESALDEPFNWKESLAERSDEKS-------GVPKGTEFLFAGKSGT-VYYVDQ-NGRQRTVHKL---DSE-VQM  235 (1416)
T ss_pred             hhccCc-hhhhcccccCccchhhcccccc-------CCCCCcEEEEEcCCce-EEEEcC-CCcEEEEEEc---cch-HHH
Confidence            233343 22222 2222111100000111       1478888999999999 777773 5666555543   122 234


Q ss_pred             EeCCCCCEEEEEeCCCeEEEEEce
Q 014977          268 ALSPNVQWLAVASDKGTVHIFSLR  291 (415)
Q Consensus       268 ~~spdg~~l~s~s~dg~i~vwd~~  291 (415)
                      -|.+-..-|+....+-++.++=+.
T Consensus       236 Lf~~~~eai~~i~e~lr~~l~~v~  259 (1416)
T KOG3617|consen  236 LFMGYCEAISIIIEFLRDCLIFVL  259 (1416)
T ss_pred             HHhcccceEEEEeeeceeeEEEec
Confidence            566655555555556555555443

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.09  E-value=0.00084  Score=66.06  Aligned_cols=189  Identities=14%  Similarity=0.191  Sum_probs=111.4

Q ss_pred             eeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE-ccCc-eeEEEEcCCeEEEE----eCC----eEEEEEcCCc-
Q 014977           94 LFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSD-VRSVKLSRDRIVVV----LEH----KIYVYSFVDL-  162 (415)
Q Consensus        94 ~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~-i~~l~~~~~~~~~~----~d~----~i~iwd~~~~-  162 (415)
                      ++++++..++-|..+     |.|.+.+ ..-+.++.++ +... |..+....+..+++    .++    .++||+++.- 
T Consensus        30 c~~s~~~~vvigt~~-----G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~  103 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTAD-----GRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD  103 (933)
T ss_pred             EEcCCCceEEEeecc-----ccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence            356666666666665     8877776 3344446665 4444 55555555545555    222    6999999532 


Q ss_pred             -----eee--eEEeccC---CCcceEEEecCCCceEEEEeCCccCeEEEEE---cCC--cceEEEecCccceEEEEeCCC
Q 014977          163 -----KLL--HQIETLA---NLRGLCCLSHHSSTSVLACPGLQRGQVRIEH---FGL--NMIKLINAHDSHIACFTLTLD  227 (415)
Q Consensus       163 -----~~~--~~~~~~~---~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~---~~~--~~~~~~~~~~~~i~~l~~sp~  227 (415)
                           .++  +.+.++.   ++.....++.+.+-..+|+ |-.+|.|..+.   .+.  ...........+|+.+++..+
T Consensus       104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~-Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d  182 (933)
T KOG2114|consen  104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVC-GFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD  182 (933)
T ss_pred             CCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEE-EecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence                 233  1222222   1222333344434456665 88999998732   222  222223344679999999999


Q ss_pred             CCEEEEEeCCCcEEEEEECCCCcE-EEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceec
Q 014977          228 GLLLATASTRGTLIRIFNTVDGTR-LQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR  293 (415)
Q Consensus       228 g~~l~s~s~dg~~I~vwd~~~~~~-~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~  293 (415)
                      ++.++-+..... |.+|.+....+ ...+..  +..++.|.+|++....+++++... +.+|+.+..
T Consensus       183 ~~s~lFv~Tt~~-V~~y~l~gr~p~~~~ld~--~G~~lnCss~~~~t~qfIca~~e~-l~fY~sd~~  245 (933)
T KOG2114|consen  183 GKSVLFVATTEQ-VMLYSLSGRTPSLKVLDN--NGISLNCSSFSDGTYQFICAGSEF-LYFYDSDGR  245 (933)
T ss_pred             CceeEEEEecce-eEEEEecCCCcceeeecc--CCccceeeecCCCCccEEEecCce-EEEEcCCCc
Confidence            987333333345 99999873332 333554  667899999987666466665554 999998743

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.08  E-value=5.4e-05  Score=68.73  Aligned_cols=197  Identities=12%  Similarity=0.132  Sum_probs=136.4

Q ss_pred             eeCCeEEEEecCCCCCCCCCeEEEEECCCCC---EEEEEE-ccCceeEEEEcCCeEEEE----eCCeEEEEEcCCceeee
Q 014977           95 FRCNILALVGAGDNSQYPPTKVIIWDDHQSR---CIGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLH  166 (415)
Q Consensus        95 ~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~---~~~~~~-~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~  166 (415)
                      +..-..++.+++.|     |.++.|.-..-.   .+..+. |...|.+++.+-++.+.+    .|..++++|+++...+.
T Consensus        16 ~~tka~fiiqASlD-----Gh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dmin   90 (558)
T KOG0882|consen   16 FPTKAKFIIQASLD-----GHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMIN   90 (558)
T ss_pred             eeehhheEEeeecc-----hhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhh
Confidence            33445566777777     999999843312   222222 678899999999998888    28899999998766655


Q ss_pred             EEeccCCCcceEEEecCCC--ceEEEEeCCccCeEEEEEcCCc---ceEEEecCccceEEEEeCCCCCEEEEEeCCCcEE
Q 014977          167 QIETLANLRGLCCLSHHSS--TSVLACPGLQRGQVRIEHFGLN---MIKLINAHDSHIACFTLTLDGLLLATASTRGTLI  241 (415)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~--~~~l~~~g~~dg~v~i~~~~~~---~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I  241 (415)
                      .++...-|.. .++...+.  -..++++...++.+.+.+..+.   ....-.-|..+|..+.+++-+..+++....|. |
T Consensus        91 miKL~~lPg~-a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gm-V  168 (558)
T KOG0882|consen   91 MIKLVDLPGF-AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGM-V  168 (558)
T ss_pred             hcccccCCCc-eEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccce-e
Confidence            4443333222 33333322  2356665667888888665542   23344568999999999999999999998998 9


Q ss_pred             EEEECCC------CcEEEEEec-------CCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCC
Q 014977          242 RIFNTVD------GTRLQEVRR-------GVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGED  298 (415)
Q Consensus       242 ~vwd~~~------~~~~~~~~~-------~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~  298 (415)
                      .-|....      .+....++.       ....+...++.|+|+|..+.+-+.|..|+++++++++....
T Consensus       169 EyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqe  238 (558)
T KOG0882|consen  169 EYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQE  238 (558)
T ss_pred             EeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhh
Confidence            9998752      111111110       11345678999999999999999999999999999986543

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.05  E-value=0.0023  Score=63.13  Aligned_cols=198  Identities=17%  Similarity=0.201  Sum_probs=120.3

Q ss_pred             EEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCe-EEEEecCCCCCCCCCeEEEEECCCC----
Q 014977           51 SWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNI-LALVGAGDNSQYPPTKVIIWDDHQS----  124 (415)
Q Consensus        51 ~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~~~~~~i~vwd~~~~----  124 (415)
                      .|++.+..++.|+ +|.|.+++-.  -+ ....++.+...++...+.-+. .+|++-+.|..-....|++|+++.-    
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s--~~-~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~  106 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSS--FQ-LIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN  106 (933)
T ss_pred             EEcCCCceEEEeeccccEEEeccc--ce-eeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC
Confidence            3678899999999 9998777643  11 212343444445555565554 5666655552222237999997542    


Q ss_pred             --CEEEE---EE-----ccCceeEEEEcCCeEEEE---eCCeEEEEEc---CC-ceeeeEEeccCCCcceEEEecCCCce
Q 014977          125 --RCIGE---FA-----FRSDVRSVKLSRDRIVVV---LEHKIYVYSF---VD-LKLLHQIETLANLRGLCCLSHHSSTS  187 (415)
Q Consensus       125 --~~~~~---~~-----~~~~i~~l~~~~~~~~~~---~d~~i~iwd~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (415)
                        +++.+   +.     ...++..++++.+-..++   .+|.|..+.=   ++ +...........+++...+..++...
T Consensus       107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~  186 (933)
T KOG2114|consen  107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSV  186 (933)
T ss_pred             CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCcee
Confidence              33422   22     245788899998877766   7899988852   11 11111122234455555565555543


Q ss_pred             EEEEeCCccCeEEEEEcCCcc--eEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEe
Q 014977          188 VLACPGLQRGQVRIEHFGLNM--IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVR  256 (415)
Q Consensus       188 ~l~~~g~~dg~v~i~~~~~~~--~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~  256 (415)
                      .+++   ....|.++...++.  ...+..|.....|..+++....+++++.. . +.+||....++-..+.
T Consensus       187 lFv~---Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e-~-l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  187 LFVA---TTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSE-F-LYFYDSDGRGPCFAFE  252 (933)
T ss_pred             EEEE---ecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCc-e-EEEEcCCCcceeeeec
Confidence            3443   24568887777765  55577888899999998765545555544 3 9999986555544555

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.04  E-value=0.0093  Score=56.66  Aligned_cols=168  Identities=13%  Similarity=0.181  Sum_probs=90.3

Q ss_pred             eEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCcce-----EEEecCCCc
Q 014977          115 KVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGL-----CCLSHHSST  186 (415)
Q Consensus       115 ~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  186 (415)
                      .|.+|+ ..|+.+..+. ..+.|.++.|+.+..+++  .||.+++||+.... ...+........+     ........|
T Consensus        62 ~I~iys-~sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~G  139 (410)
T PF04841_consen   62 SIQIYS-SSGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNG  139 (410)
T ss_pred             EEEEEC-CCCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCCC
Confidence            589998 6788888877 348999999999887777  89999999986333 1111111100011     111222244


Q ss_pred             eEEEEeCCccCeEEE-EEcCCc-ceEEEe---c-------CccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEE
Q 014977          187 SVLACPGLQRGQVRI-EHFGLN-MIKLIN---A-------HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQE  254 (415)
Q Consensus       187 ~~l~~~g~~dg~v~i-~~~~~~-~~~~~~---~-------~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~  254 (415)
                       +++.+  .++.+.+ .+.... ..+.+.   .       +........++.+....+....++. +.+.+-...+.   
T Consensus       140 -ivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~-i~~i~~~~~~~---  212 (410)
T PF04841_consen  140 -IVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGET-IYIIDENSFKQ---  212 (410)
T ss_pred             -EEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCE-EEEEEcccccc---
Confidence             33333  2444554 332221 111111   0       0000000223334444344444444 44333222111   


Q ss_pred             EecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977          255 VRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (415)
Q Consensus       255 ~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  294 (415)
                      +.   ..+++..|+.||+|++||.-..+|.+.|...+-.+
T Consensus       213 i~---~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~  249 (410)
T PF04841_consen  213 ID---SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSE  249 (410)
T ss_pred             cc---CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccc
Confidence            11   23579999999999999999999998887654443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.02  E-value=0.01  Score=57.98  Aligned_cols=191  Identities=13%  Similarity=0.148  Sum_probs=103.0

Q ss_pred             EEEEEe-CCcEEEEEccCCceeEEEeccCCCe----eEE--EEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEE
Q 014977           58 CFAAGT-SCGFRIYNCEPFKETFRRDLKSGGF----RIV--EMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEF  130 (415)
Q Consensus        58 ~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~  130 (415)
                      .+.+++ ++.+.-.|..+++.+..........    .+.  .+....++.+++.. .+     +.|.-+|.++|+.+..+
T Consensus        63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~-~~-----g~v~AlD~~TG~~~W~~  136 (488)
T cd00216          63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGT-FD-----GRLVALDAETGKQVWKF  136 (488)
T ss_pred             EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEec-CC-----CeEEEEECCCCCEeeee
Confidence            444455 8888888988877776654422100    000  01111214444433 33     99999999999999888


Q ss_pred             EccCc------ee-EEEEcCCeEEEE-e----------CCeEEEEEcCCceeeeEEeccCCCc-ce--------------
Q 014977          131 AFRSD------VR-SVKLSRDRIVVV-L----------EHKIYVYSFVDLKLLHQIETLANLR-GL--------------  177 (415)
Q Consensus       131 ~~~~~------i~-~l~~~~~~~~~~-~----------d~~i~iwd~~~~~~~~~~~~~~~~~-~~--------------  177 (415)
                      .....      +. ...+.. +.+++ .          ++.++.+|..+++.+..+....... ..              
T Consensus       137 ~~~~~~~~~~~i~ssP~v~~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g  215 (488)
T cd00216         137 GNNDQVPPGYTMTGAPTIVK-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGG  215 (488)
T ss_pred             cCCCCcCcceEecCCCEEEC-CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCC
Confidence            74332      11 122222 44443 1          4789999999999888775432100 00              


Q ss_pred             ----EEEecCCCceEEEEeCCccC------------------eEEE-EEcCCcceEEEecCccce------EEEEeC---
Q 014977          178 ----CCLSHHSSTSVLACPGLQRG------------------QVRI-EHFGLNMIKLINAHDSHI------ACFTLT---  225 (415)
Q Consensus       178 ----~~~~~~~~~~~l~~~g~~dg------------------~v~i-~~~~~~~~~~~~~~~~~i------~~l~~s---  225 (415)
                          .....++.+..+++ +..++                  .|.- +..+++..-..+.-....      ....+.   
T Consensus       216 ~~vw~~pa~d~~~g~V~v-g~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~  294 (488)
T cd00216         216 GTSWASPTYDPKTNLVYV-GTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIK  294 (488)
T ss_pred             CCccCCeeEeCCCCEEEE-ECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecc
Confidence                01122222223333 33333                  3433 445555555543211100      000111   


Q ss_pred             -CCCC---EEEEEeCCCcEEEEEECCCCcEEEEEec
Q 014977          226 -LDGL---LLATASTRGTLIRIFNTVDGTRLQEVRR  257 (415)
Q Consensus       226 -p~g~---~l~s~s~dg~~I~vwd~~~~~~~~~~~~  257 (415)
                       -+|.   .++.++.+|. +...|.++|+.+.....
T Consensus       295 ~~~g~~~~~V~~g~~~G~-l~ald~~tG~~~W~~~~  329 (488)
T cd00216         295 PKDGKPVPAIVHAPKNGF-FYVLDRTTGKLISARPE  329 (488)
T ss_pred             ccCCCeeEEEEEECCCce-EEEEECCCCcEeeEeEe
Confidence             1343   6778888999 99999999999877653

The alignment model contains an 8-bladed beta-propeller.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.01  E-value=0.00034  Score=62.79  Aligned_cols=242  Identities=12%  Similarity=0.045  Sum_probs=129.4

Q ss_pred             CccCCCCCCceEEEEEeCCCC-EEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCC-eEEEEecCCCCCCCC
Q 014977           37 TAFSDVDEIELISVSWNQDYG-CFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCN-ILALVGAGDNSQYPP  113 (415)
Q Consensus        37 ~~~~~~h~~~V~~l~~sp~g~-~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~~~~  113 (415)
                      .+...+|...|..++|+|... ++..++ ++.|+|.|+++........   ....+.+++|+-+ ..++.+|...     
T Consensus       186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~---a~~~~wSC~wDlde~h~IYaGl~n-----  257 (463)
T KOG1645|consen  186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI---AYNQIWSCCWDLDERHVIYAGLQN-----  257 (463)
T ss_pred             hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehee---ccCCceeeeeccCCcceeEEeccC-----
Confidence            346788999999999999887 677788 9999999999865544433   2366777777764 4555566555     


Q ss_pred             CeEEEEECCCCC-EEEEEE---ccCceeEEEEcC-------CeEEEEeCCeEEEEEcCC--ceeeeEEeccCCCcceEEE
Q 014977          114 TKVIIWDDHQSR-CIGEFA---FRSDVRSVKLSR-------DRIVVVLEHKIYVYSFVD--LKLLHQIETLANLRGLCCL  180 (415)
Q Consensus       114 ~~i~vwd~~~~~-~~~~~~---~~~~i~~l~~~~-------~~~~~~~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~  180 (415)
                      |.|.|||++..+ .+.++.   ...+|..++.-+       .|.+++.--.+..|++.-  +.....++.. .+..++.+
T Consensus       258 G~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l~f~ei~~s~~~~p~vlele-~pG~cism  336 (463)
T KOG1645|consen  258 GMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVLQFYEIVFSAECLPCVLELE-PPGICISM  336 (463)
T ss_pred             ceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehhhhhhhhhccccCCCcccccC-CCcceeee
Confidence            999999987643 222222   223444433322       222222333334454421  1111111111 11233444


Q ss_pred             ecCCCceEEEEeCCccC------e--EEEEEcCCcceEEEe-cC-ccc------eEEEEeCCCCCEEEE-EeCCCcEEEE
Q 014977          181 SHHSSTSVLACPGLQRG------Q--VRIEHFGLNMIKLIN-AH-DSH------IACFTLTLDGLLLAT-ASTRGTLIRI  243 (415)
Q Consensus       181 ~~~~~~~~l~~~g~~dg------~--v~i~~~~~~~~~~~~-~~-~~~------i~~l~~sp~g~~l~s-~s~dg~~I~v  243 (415)
                      ..++....++.+-..+.      .  ++++..++..+-..+ ++ .+.      -..+.-.++.++|+. +...+. +.+
T Consensus       337 qy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~-lil  415 (463)
T KOG1645|consen  337 QYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNE-LIL  415 (463)
T ss_pred             eecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcce-eEE
Confidence            44443233332221110      0  122222332221111 11 000      011222345555554 444556 999


Q ss_pred             EECCCCcEEEEEecCCCcccEEEEEeCC-C-CCEEEEEeCCCeEEEEEcee
Q 014977          244 FNTVDGTRLQEVRRGVDRAEIYSIALSP-N-VQWLAVASDKGTVHIFSLRV  292 (415)
Q Consensus       244 wd~~~~~~~~~~~~~~~~~~v~~l~~sp-d-g~~l~s~s~dg~i~vwd~~~  292 (415)
                      ||..+++.++++.-   ..+|.+++... + +.+|++-++| .++||..+.
T Consensus       416 ~D~~s~evvQ~l~~---~epv~Dicp~~~n~~syLa~LTd~-~v~Iyk~es  462 (463)
T KOG1645|consen  416 QDPHSFEVVQTLAL---SEPVLDICPNDTNGSSYLALLTDD-RVHIYKNES  462 (463)
T ss_pred             eccchhheeeeccc---CcceeecceeecCCcchhhheecc-eEEEEecCC
Confidence            99999999999884   46788876543 2 3477766654 589987653

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.98  E-value=6.6e-05  Score=71.11  Aligned_cols=159  Identities=19%  Similarity=0.178  Sum_probs=100.8

Q ss_pred             ccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEE-EEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977          216 DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIY-SIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (415)
Q Consensus       216 ~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~-~l~~spdg~~l~s~s~dg~i~vwd~~~~~  294 (415)
                      ...+..+.|+|.-.++|.+..+|. |.++.+. .+.+.++..  +...++ +++|.|||+.||+|-.||+|++.|++++.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~ge-lli~R~n-~qRlwtip~--p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~   95 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGE-LLIHRLN-WQRLWTIPI--PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG   95 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCc-EEEEEec-cceeEeccC--CCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence            345678899999999999999999 9999886 888888885  333455 99999999999999999999999999998


Q ss_pred             cCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCccc---ccccccCccccccc-------ceEEEEeCCCceEE
Q 014977          295 VGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLS---FMRGVLPKYFSSEW-------SFAQFHIPEVTHFI  364 (415)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~  364 (415)
                      ....       ...+.+...-+.-++..-............+   .+++.+|+.-.+.+       .+..++.|.    .
T Consensus        96 ~l~~-------~~~s~e~~is~~~w~~~~v~~e~n~~d~~~na~del~rll~~L~t~~rn~~~~sk~~sq~~~pk----~  164 (665)
T KOG4640|consen   96 RLVS-------FLFSVETDISKGIWDRIEVRVEENNRDFACNAIDELPRLLPKLPTSKRNIVPCSKIFSQFRGPK----I  164 (665)
T ss_pred             ceec-------cccccccchheeecccceeeccccccchhhhhHhHHHHHhccCCCCcccCCcccchhhhhhCCc----c
Confidence            6541       1234444445555553333333333332222   33444554433332       222233222    1


Q ss_pred             EEecCC---CEEEEEEeCCcEEEEEEec
Q 014977          365 AAFGSQ---NTVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       365 ~~~~~~---~~i~~~~~dg~~~~~~~~~  389 (415)
                      .....+   ..+.+.+.-|..+|+.+..
T Consensus       165 ~~l~~n~kl~Vlm~~ge~g~~~I~~~~~  192 (665)
T KOG4640|consen  165 DDLDSNLKLDVLMVFGERGNDKITAFFN  192 (665)
T ss_pred             ccccccceeEEEEeeccccceEeeeccc
Confidence            222222   3344455558888877765

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.97  E-value=0.017  Score=54.49  Aligned_cols=238  Identities=15%  Similarity=0.110  Sum_probs=153.0

Q ss_pred             ceEEEEEeCCCCEEEEEe--CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeE-EEEecCCCCCCCCCeEEEEECC
Q 014977           46 ELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNIL-ALVGAGDNSQYPPTKVIIWDDH  122 (415)
Q Consensus        46 ~V~~l~~sp~g~~la~g~--d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~~~~~~i~vwd~~  122 (415)
                      ....+.+.+++..+.+..  ...+.+.+..  .................+..++.+. .++....+     +.|.+.|..
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~--~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~-----~~v~vid~~  104 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT--SNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDS-----NTVSVIDTA  104 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccc--cceeeeeccCCCccccceeeCCCCCeEEEecCCC-----CeEEEEcCc
Confidence            566778888886666555  2333333332  1111111111112333444555443 55555444     899999988


Q ss_pred             CCCEEEEEEccCceeEEEEcCCeEEEE---e---CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCcc
Q 014977          123 QSRCIGEFAFRSDVRSVKLSRDRIVVV---L---EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR  196 (415)
Q Consensus       123 ~~~~~~~~~~~~~i~~l~~~~~~~~~~---~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  196 (415)
                      +.+.............+++++++..+.   .   ++.+.+.|-.+.+.+........+   ..+.+++++..+..+...+
T Consensus       105 ~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P---~~~a~~p~g~~vyv~~~~~  181 (381)
T COG3391         105 TNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP---TGVAVDPDGNKVYVTNSDD  181 (381)
T ss_pred             ccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc---ceEEECCCCCeEEEEecCC
Confidence            888888877666888899999886555   2   588999998888888775544333   5566666776665555678


Q ss_pred             CeEEEEEcCCcceEE-----EecCccceEEEEeCCCCCEEEEEeCC---CcEEEEEECCCCcEEEE-EecCCCcccEEEE
Q 014977          197 GQVRIEHFGLNMIKL-----INAHDSHIACFTLTLDGLLLATASTR---GTLIRIFNTVDGTRLQE-VRRGVDRAEIYSI  267 (415)
Q Consensus       197 g~v~i~~~~~~~~~~-----~~~~~~~i~~l~~sp~g~~l~s~s~d---g~~I~vwd~~~~~~~~~-~~~~~~~~~v~~l  267 (415)
                      +.|.+.+.....+..     ...-......+.++|+|.++......   +. +...|..++..... +... .. ....+
T Consensus       182 ~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~-v~~id~~~~~v~~~~~~~~-~~-~~~~v  258 (381)
T COG3391         182 NTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN-VLKIDTATGNVTATDLPVG-SG-APRGV  258 (381)
T ss_pred             CeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCce-EEEEeCCCceEEEeccccc-cC-CCCce
Confidence            888886655554442     11122334678899999976665544   47 99999988877655 2221 22 45678


Q ss_pred             EeCCCCCEEEEEeCC-CeEEEEEceecccC
Q 014977          268 ALSPNVQWLAVASDK-GTVHIFSLRVRVVG  296 (415)
Q Consensus       268 ~~spdg~~l~s~s~d-g~i~vwd~~~~~~~  296 (415)
                      ..+|+|..+.+.... +.+.+-|..+....
T Consensus       259 ~~~p~g~~~yv~~~~~~~V~vid~~~~~v~  288 (381)
T COG3391         259 AVDPAGKAAYVANSQGGTVSVIDGATDRVV  288 (381)
T ss_pred             eECCCCCEEEEEecCCCeEEEEeCCCCcee
Confidence            899999998887444 78999888876543

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.94  E-value=0.0043  Score=59.98  Aligned_cols=117  Identities=7%  Similarity=0.012  Sum_probs=84.5

Q ss_pred             cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~  117 (415)
                      +..-|...|.--++...+++++.|+ -|.+.+|+-..+... .....+....++....+++..++|.++..     |.|.
T Consensus        28 ~~~~~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~-~~~~~~~~~~~~~~~vs~~e~lvAagt~~-----g~V~  101 (726)
T KOG3621|consen   28 QPGFFPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMR-KLKNEGATGITCVRSVSSVEYLVAAGTAS-----GRVS  101 (726)
T ss_pred             ccccCcceEEEEEeecCCceEEEecccceEEEEecCchhhh-cccccCccceEEEEEecchhHhhhhhcCC-----ceEE
Confidence            4455677788888888999999999 899999998764433 22332344555566677777777777776     8999


Q ss_pred             EEECCCCCEEEE--E-----EccCceeEEEEcCCeEEEE---eCCeEEEEEcCC
Q 014977          118 IWDDHQSRCIGE--F-----AFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVD  161 (415)
Q Consensus       118 vwd~~~~~~~~~--~-----~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~  161 (415)
                      ++.+..+.+-..  +     .|+..|++++|++++..+.   ..|+|..-.+..
T Consensus       102 v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  102 VFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             eehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            998766432111  1     1678999999999999888   467887777665

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.89  E-value=1.1e-05  Score=78.85  Aligned_cols=216  Identities=9%  Similarity=0.059  Sum_probs=135.4

Q ss_pred             cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~  117 (415)
                      ....|....+|++|+-+.++|++|+ .|.|++|++.++...-.  ...|...+..+..+.++....+.+..   +.-...
T Consensus      1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s--~ncH~SavT~vePs~dgs~~Ltsss~---S~Plsa 1170 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEES--VNCHQSAVTLVEPSVDGSTQLTSSSS---SSPLSA 1170 (1516)
T ss_pred             hhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccc--ccccccccccccccCCcceeeeeccc---cCchHH
Confidence            4567888999999999999999999 99999999998665443  33677777777777766544443321   124677


Q ss_pred             EEECCC-CCEEEEEEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccC--CCcceEEEecCCCceEEEE
Q 014977          118 IWDDHQ-SRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLA--NLRGLCCLSHHSSTSVLAC  191 (415)
Q Consensus       118 vwd~~~-~~~~~~~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~  191 (415)
                      +|++.. +.....+.   .-.++.|+.....-+   ......+||++++..+.++-...  ....-...+++|...++. 
T Consensus      1171 LW~~~s~~~~~Hsf~---ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl- 1246 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFD---EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL- 1246 (1516)
T ss_pred             HhccccccCcccccc---ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe-
Confidence            898654 34444443   234566765432222   45678899999988777642211  111112334444444543 


Q ss_pred             eCCccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeC
Q 014977          192 PGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALS  270 (415)
Q Consensus       192 ~g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~s  270 (415)
                         .||.  +|+.+. +.++.+......+ .-.|+|+|..++.-+      .|||+++.+.++.+..-    .-..+.|+
T Consensus      1247 ---ndGv--LWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINS------EIwD~RTF~lLh~VP~L----dqc~VtFN 1310 (1516)
T KOG1832|consen 1247 ---NDGV--LWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINS------EIWDMRTFKLLHSVPSL----DQCAVTFN 1310 (1516)
T ss_pred             ---eCce--eeeeccHHHHhhhhhheecc-cccccCCCceEEeec------hhhhhHHHHHHhcCccc----cceEEEec
Confidence               3442  477665 3344443333222 235899998877633      48999999888776642    23567888


Q ss_pred             CCCCEEEEE
Q 014977          271 PNVQWLAVA  279 (415)
Q Consensus       271 pdg~~l~s~  279 (415)
                      ..|..++..
T Consensus      1311 stG~VmYa~ 1319 (1516)
T KOG1832|consen 1311 STGDVMYAM 1319 (1516)
T ss_pred             cCccchhhh
Confidence            888876543

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=97.86  E-value=0.0006  Score=67.42  Aligned_cols=170  Identities=13%  Similarity=0.152  Sum_probs=115.6

Q ss_pred             CeEEEEECCCCCEEEEEEc-cCceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEE
Q 014977          114 TKVIIWDDHQSRCIGEFAF-RSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC  191 (415)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~~-~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  191 (415)
                      ..+..+|+.+.+..+.... ...|.-|+.+....... ..|+|.+-|..+.+.++++..|..  .+..+...  |.+|++
T Consensus       157 ~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~--siSDfDv~--GNlLit  232 (1118)
T KOG1275|consen  157 EKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSG--SISDFDVQ--GNLLIT  232 (1118)
T ss_pred             hheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeecccc--ceeeeecc--CCeEEE
Confidence            6788889888887777763 33566666554433333 789999999999999999999987  55555554  446666


Q ss_pred             eCC--------ccCeEEEEEcCC-cceEEEecCccceEEEEeCCCC-CEEEEEeCCCcEEEEEECCCC-cE-EEEEecCC
Q 014977          192 PGL--------QRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDG-LLLATASTRGTLIRIFNTVDG-TR-LQEVRRGV  259 (415)
Q Consensus       192 ~g~--------~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~-~~-~~~~~~~~  259 (415)
                      +|.        .|..|++|+.+. +.+..+.-+.++ .-+.|+|.- ..+++++..|. ..+-|..+. .+ ...+....
T Consensus       233 CG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq-~q~vd~~~lsNP~~~~~~v~p  310 (1118)
T KOG1275|consen  233 CGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQ-FQFVDTATLSNPPAGVKMVNP  310 (1118)
T ss_pred             eecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccc-eeeccccccCCCccceeEEcc
Confidence            563        345567766553 333333333333 446677743 46788888898 999884321 11 22222221


Q ss_pred             CcccEEEEEeCCCCCEEEEEeCCCeEEEEE
Q 014977          260 DRAEIYSIALSPNVQWLAVASDKGTVHIFS  289 (415)
Q Consensus       260 ~~~~v~~l~~spdg~~l~s~s~dg~i~vwd  289 (415)
                      ....+..+.++++|+.||.+..+|.|.+|.
T Consensus       311 ~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  311 NGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             CCCcceeEEecCCCceEEEecccCcEeeec
Confidence            444699999999999999999999999998

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.86  E-value=0.014  Score=52.38  Aligned_cols=199  Identities=12%  Similarity=0.074  Sum_probs=119.4

Q ss_pred             CCceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEE-------------eccCCCeeEEEEe---eeCCeEEEEecCC
Q 014977           44 EIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRR-------------DLKSGGFRIVEML---FRCNILALVGAGD  107 (415)
Q Consensus        44 ~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~-------------~~~~~~~~~~~~~---~~~~~~~l~s~~~  107 (415)
                      ...|..+...++-+.|++-+|+.+.+++++........             .+ .....+..++   .......++.+-.
T Consensus        35 ~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~f~~~~~~~~~~~L~va~k  113 (275)
T PF00780_consen   35 LSSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKL-PETKGVSFFAVNGGHEGSRRLCVAVK  113 (275)
T ss_pred             cceEEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccccccc-cccCCeeEEeeccccccceEEEEEEC
Confidence            33499999999988888888999999999754433311             11 1222233333   2223344444443


Q ss_pred             CCCCCCCeEEEEECCCC-----CEEEEEEccCceeEEEEcCCeEEEEeCCeEEEEEcCCceeeeEEeccCCC--------
Q 014977          108 NSQYPPTKVIIWDDHQS-----RCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANL--------  174 (415)
Q Consensus       108 d~~~~~~~i~vwd~~~~-----~~~~~~~~~~~i~~l~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--------  174 (415)
                            ..|.+|.+...     +..+++.....+.+++|.++...++..+...+.|+.++.....+......        
T Consensus       114 ------k~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~  187 (275)
T PF00780_consen  114 ------KKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNS  187 (275)
T ss_pred             ------CEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCCceEEEecCCCCceEEeCccCCcchhhhccc
Confidence                  68888876542     56677778899999999977777767888999999876654443222111        


Q ss_pred             -cceEEEecCCCceEEEEeCCccCeEEEEEcCCcceE--EEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcE
Q 014977          175 -RGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIK--LINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR  251 (415)
Q Consensus       175 -~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~--~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~  251 (415)
                       .....+..-+++.+|++-  .+-.+. -+..+...+  .+.- .....++++.  ..+|+.... +. |.||++.+++.
T Consensus       188 ~~~~~~~~~~~~~e~Ll~~--~~~g~f-v~~~G~~~r~~~i~W-~~~p~~~~~~--~pyli~~~~-~~-iEV~~~~~~~l  259 (275)
T PF00780_consen  188 SSKPLGIFQLSDNEFLLCY--DNIGVF-VNKNGEPSRKSTIQW-SSAPQSVAYS--SPYLIAFSS-NS-IEVRSLETGEL  259 (275)
T ss_pred             CCCceEEEEeCCceEEEEe--cceEEE-EcCCCCcCcccEEEc-CCchhEEEEE--CCEEEEECC-CE-EEEEECcCCcE
Confidence             112222222334555541  222222 344444433  2332 2344555553  346666554 56 99999999999


Q ss_pred             EEEEec
Q 014977          252 LQEVRR  257 (415)
Q Consensus       252 ~~~~~~  257 (415)
                      ++.+..
T Consensus       260 vQ~i~~  265 (275)
T PF00780_consen  260 VQTIPL  265 (275)
T ss_pred             EEEEEC
Confidence            988875

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.85  E-value=0.025  Score=54.16  Aligned_cols=243  Identities=13%  Similarity=0.095  Sum_probs=126.4

Q ss_pred             CceEEEEEeCCCCEEEEEe--CCc----EEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCC------
Q 014977           45 IELISVSWNQDYGCFAAGT--SCG----FRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYP------  112 (415)
Q Consensus        45 ~~V~~l~~sp~g~~la~g~--d~~----v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~------  112 (415)
                      ..+....++|||+++|.+-  .|.    ++++|+++++.+ ...+..  .....+.|.+++..++....+....      
T Consensus       124 ~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l-~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~  200 (414)
T PF02897_consen  124 VSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFL-PDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGY  200 (414)
T ss_dssp             EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEE-EEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred             EEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCc-CCcccc--cccceEEEeCCCCEEEEEEeCcccccccCCC
Confidence            3445788999999999765  444    899999986443 222211  1112278888754443333222112      


Q ss_pred             CCeEEEEECCCCCE--EEEEE--ccCc-eeEEEEcCCeEEEE------eC-CeEEEEEcCCc----eeeeEEeccCCCcc
Q 014977          113 PTKVIIWDDHQSRC--IGEFA--FRSD-VRSVKLSRDRIVVV------LE-HKIYVYSFVDL----KLLHQIETLANLRG  176 (415)
Q Consensus       113 ~~~i~vwd~~~~~~--~~~~~--~~~~-i~~l~~~~~~~~~~------~d-~~i~iwd~~~~----~~~~~~~~~~~~~~  176 (415)
                      ...|..|.+.+...  ...+.  .... ...+..++|+++++      .+ ..+++.++..+    .....+........
T Consensus       201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~  280 (414)
T PF02897_consen  201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVE  280 (414)
T ss_dssp             CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-E
T ss_pred             CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceE
Confidence            46789999877643  23343  2333 67888999998877      24 67888998764    22333332222111


Q ss_pred             eEEEecCCCceEEEEeCC--ccCeEEEEEcCCcc----eEEEecCcc--ceEEEEeCCCCCEEE-EEeCCCc-EEEEEEC
Q 014977          177 LCCLSHHSSTSVLACPGL--QRGQVRIEHFGLNM----IKLINAHDS--HIACFTLTLDGLLLA-TASTRGT-LIRIFNT  246 (415)
Q Consensus       177 ~~~~~~~~~~~~l~~~g~--~dg~v~i~~~~~~~----~~~~~~~~~--~i~~l~~sp~g~~l~-s~s~dg~-~I~vwd~  246 (415)
                       ..+... .+.+++.+..  .++.|..-+.....    ...+..+..  .+..+..  .+.+|+ ....++. .|+++++
T Consensus       281 -~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~  356 (414)
T PF02897_consen  281 -YYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDL  356 (414)
T ss_dssp             -EEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEET
T ss_pred             -EEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEEC
Confidence             112222 2333333321  22333333333211    224555555  3444444  344444 4444442 3889998


Q ss_pred             CCCcEEEEEecCCCcccEEEEEeCCCCCEEE--EEeC--CCeEEEEEceeccc
Q 014977          247 VDGTRLQEVRRGVDRAEIYSIALSPNVQWLA--VASD--KGTVHIFSLRVRVV  295 (415)
Q Consensus       247 ~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~--s~s~--dg~i~vwd~~~~~~  295 (415)
                      ..+.....+... ..+.|..+...+++..+.  ..+.  -++++.||+.+++.
T Consensus       357 ~~~~~~~~~~~p-~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~  408 (414)
T PF02897_consen  357 DDGKESREIPLP-EAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL  408 (414)
T ss_dssp             T-TEEEEEEESS-SSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred             CCCcEEeeecCC-cceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence            745555566543 334567777667666443  2332  35788889888874

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.84  E-value=0.00093  Score=67.16  Aligned_cols=132  Identities=18%  Similarity=0.329  Sum_probs=91.6

Q ss_pred             CCeEEEEEcCCceeeeEEeccCCCcceEEEecCC-------CceEEEEeCCccCeEEEEEcCCcc--eEEEe----cCcc
Q 014977          151 EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHS-------STSVLACPGLQRGQVRIEHFGLNM--IKLIN----AHDS  217 (415)
Q Consensus       151 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~g~~dg~v~i~~~~~~~--~~~~~----~~~~  217 (415)
                      ...|+-.|++.|+.+..+..+... .+..+.++.       ...++   |-.+..+..|+.+...  +..-.    ....
T Consensus       503 ~~~ly~mDLe~GKVV~eW~~~~~~-~v~~~~p~~K~aqlt~e~tfl---Gls~n~lfriDpR~~~~k~v~~~~k~Y~~~~  578 (794)
T PF08553_consen  503 PNKLYKMDLERGKVVEEWKVHDDI-PVVDIAPDSKFAQLTNEQTFL---GLSDNSLFRIDPRLSGNKLVDSQSKQYSSKN  578 (794)
T ss_pred             CCceEEEecCCCcEEEEeecCCCc-ceeEecccccccccCCCceEE---EECCCceEEeccCCCCCceeeccccccccCC
Confidence            578999999999999999887652 366776642       22233   3345556556655432  22111    2345


Q ss_pred             ceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEE-EecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEcee
Q 014977          218 HIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQE-VRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV  292 (415)
Q Consensus       218 ~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~-~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~  292 (415)
                      ...|++-+.+| +||+|+.+|. ||+||- .|+.-++ |.+  ...+|.+|..+.||+||++.+ +..|.|++..-
T Consensus       579 ~Fs~~aTt~~G-~iavgs~~G~-IRLyd~-~g~~AKT~lp~--lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~~  648 (794)
T PF08553_consen  579 NFSCFATTEDG-YIAVGSNKGD-IRLYDR-LGKRAKTALPG--LGDPIIGIDVTADGKWILATC-KTYLLLIDTLI  648 (794)
T ss_pred             CceEEEecCCc-eEEEEeCCCc-EEeecc-cchhhhhcCCC--CCCCeeEEEecCCCcEEEEee-cceEEEEEEee
Confidence            67788888888 6899999999 999994 5543333 333  567999999999999987665 56688888754

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.83  E-value=0.0037  Score=60.83  Aligned_cols=186  Identities=9%  Similarity=-0.041  Sum_probs=108.7

Q ss_pred             EEeCCCCEEEEEe--CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEE
Q 014977           51 SWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIG  128 (415)
Q Consensus        51 ~~sp~g~~la~g~--d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~  128 (415)
                      =++|||+.+...+  .+.+.+.|.++.+....... +.  ....+.+++++.++...+.+.. ...++...+..+...+.
T Consensus       199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V-dg--npd~v~~spdGk~afvTsyNsE-~G~tl~em~a~e~d~~v  274 (635)
T PRK02888        199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV-DG--NLDNVDTDYDGKYAFSTCYNSE-EGVTLAEMMAAERDWVV  274 (635)
T ss_pred             ccCCCCCEeecccceeEEEEEEECccceEEEEEEe-CC--CcccceECCCCCEEEEeccCcc-cCcceeeeccccCceEE
Confidence            3456887665444  67788888887665554443 22  2234456667666555432100 01333333332222222


Q ss_pred             EEEccCceeEEEEcCCeEEEE-eCCeEEEEEcCC-----ceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEE
Q 014977          129 EFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFVD-----LKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIE  202 (415)
Q Consensus       129 ~~~~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~  202 (415)
                      .+.-.. +  -++.++|++.. .++.|.+.|..+     .+.+..+.....   ...+..+|+++++++++..+.+|.+.
T Consensus       275 vfni~~-i--ea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKs---PHGV~vSPDGkylyVanklS~tVSVI  348 (635)
T PRK02888        275 VFNIAR-I--EEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKN---PHGVNTSPDGKYFIANGKLSPTVTVI  348 (635)
T ss_pred             EEchHH-H--HHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCC---ccceEECCCCCEEEEeCCCCCcEEEE
Confidence            221110 0  02334565544 667899999887     455665655443   34455667788888889889999996


Q ss_pred             EcCCcc-------------eEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCC
Q 014977          203 HFGLNM-------------IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVD  248 (415)
Q Consensus       203 ~~~~~~-------------~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~  248 (415)
                      +.....             +.......+ ....+|.++|....+-.-|.. |..||+..
T Consensus       349 Dv~k~k~~~~~~~~~~~~vvaevevGlG-PLHTaFDg~G~aytslf~dsq-v~kwn~~~  405 (635)
T PRK02888        349 DVRKLDDLFDGKIKPRDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLDSQ-IVKWNIEA  405 (635)
T ss_pred             EChhhhhhhhccCCccceEEEeeccCCC-cceEEECCCCCEEEeEeecce-eEEEehHH
Confidence            654422             222222222 345788999988888888998 99999875

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.82  E-value=0.008  Score=52.08  Aligned_cols=225  Identities=15%  Similarity=0.161  Sum_probs=128.0

Q ss_pred             EEEEEeCCCC-EEEEEe-CCc-EEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCC
Q 014977           48 ISVSWNQDYG-CFAAGT-SCG-FRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQS  124 (415)
Q Consensus        48 ~~l~~sp~g~-~la~g~-d~~-v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~  124 (415)
                      ..++|+|... -++.+. -|+ ..++|....++.....-.......-.-.|++++.+|.....|..-..|.|-|||...+
T Consensus        71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~  150 (366)
T COG3490          71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG  150 (366)
T ss_pred             CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence            3456666433 344444 333 4677777655544433222222222345899999998887775556789999997754


Q ss_pred             -CEEEEEE-ccCceeEEEEcCCeEEEE-eCCeEEEE-E-------c------------CCceeeeEEecc--CCCcceEE
Q 014977          125 -RCIGEFA-FRSDVRSVKLSRDRIVVV-LEHKIYVY-S-------F------------VDLKLLHQIETL--ANLRGLCC  179 (415)
Q Consensus       125 -~~~~~~~-~~~~i~~l~~~~~~~~~~-~d~~i~iw-d-------~------------~~~~~~~~~~~~--~~~~~~~~  179 (415)
                       +.+.++. |.-....+.+.+||+.++ .+|.|..- |       +            .+++.+......  .....+..
T Consensus       151 fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRH  230 (366)
T COG3490         151 FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRH  230 (366)
T ss_pred             cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceee
Confidence             4455565 666778899999999988 67766655 2       2            222222211111  11122333


Q ss_pred             EecCCCceEEEEeCCccCeEEE-EEcC---------------CcceEEEe-------cCccceEEEEeCCCCCEEEEEeC
Q 014977          180 LSHHSSTSVLACPGLQRGQVRI-EHFG---------------LNMIKLIN-------AHDSHIACFTLTLDGLLLATAST  236 (415)
Q Consensus       180 ~~~~~~~~~l~~~g~~dg~v~i-~~~~---------------~~~~~~~~-------~~~~~i~~l~~sp~g~~l~s~s~  236 (415)
                      +...+           ||+|.. -.+.               ++.+..+.       .....|-+|+.+.+..+++..+-
T Consensus       231 ld~g~-----------dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP  299 (366)
T COG3490         231 LDIGR-----------DGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSP  299 (366)
T ss_pred             eeeCC-----------CCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecC
Confidence            33333           444443 1111               22222222       12345778888877777777777


Q ss_pred             CCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEE
Q 014977          237 RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFS  289 (415)
Q Consensus       237 dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd  289 (415)
                      .|....+||..+|..+..-.-.    ....++-  ...-+++.+.+|.+.++.
T Consensus       300 ~GN~~vi~da~tG~vv~~a~l~----daaGva~--~~~gf~vssg~G~~~~~s  346 (366)
T COG3490         300 RGNRAVIWDAATGAVVSEAALP----DAAGVAA--AKGGFAVSSGQGRIIFYS  346 (366)
T ss_pred             CCCeEEEEEcCCCcEEeccccc----cccccee--ccCceEEecCCceEEecc
Confidence            7765889999999987543321    1233333  333466677788888873

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.80  E-value=1.6e-05  Score=77.89  Aligned_cols=189  Identities=10%  Similarity=0.041  Sum_probs=130.6

Q ss_pred             eccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE-----eCCeEE
Q 014977           82 DLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-----LEHKIY  155 (415)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~-----~d~~i~  155 (415)
                      .|+.+.....+++|+.+...++.|...     |.|+++++.+|.....+. |...|+-+.-+.+|....     ..--..
T Consensus      1096 ~frd~~~~fTc~afs~~~~hL~vG~~~-----Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHA-----GEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred             hhhccccceeeEEeecCCceEEeeecc-----ceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence            346777888999999988888888877     999999999999888888 999999999999988776     122467


Q ss_pred             EEEcC-CceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC-cceEE-Ee---cCccceEEEEeCCCCC
Q 014977          156 VYSFV-DLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKL-IN---AHDSHIACFTLTLDGL  229 (415)
Q Consensus       156 iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~-~~~~~-~~---~~~~~i~~l~~sp~g~  229 (415)
                      +|++. ++...+.+...    ..+.|+-+.....+   |.......+|+... .++.+ +.   +....-+...|+|+..
T Consensus      1171 LW~~~s~~~~~Hsf~ed----~~vkFsn~~q~r~~---gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~ 1243 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFDED----KAVKFSNSLQFRAL---GTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT 1243 (1516)
T ss_pred             HhccccccCcccccccc----ceeehhhhHHHHHh---cccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc
Confidence            89984 34555555432    34555544333333   33344566665543 33333 22   2223336788999998


Q ss_pred             EEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977          230 LLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       230 ~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                      +++   .||.   +||++..+.++.|..  .... ..=.|+|.|.-++.-+     .|||+++-+-.
T Consensus      1244 LIl---ndGv---LWDvR~~~aIh~FD~--ft~~-~~G~FHP~g~eVIINS-----EIwD~RTF~lL 1296 (1516)
T KOG1832|consen 1244 LIL---NDGV---LWDVRIPEAIHRFDQ--FTDY-GGGGFHPSGNEVIINS-----EIWDMRTFKLL 1296 (1516)
T ss_pred             eEe---eCce---eeeeccHHHHhhhhh--heec-ccccccCCCceEEeec-----hhhhhHHHHHH
Confidence            876   5776   999998888877765  2211 2235999999888765     58999987654

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.76  E-value=0.021  Score=51.69  Aligned_cols=214  Identities=14%  Similarity=0.064  Sum_probs=122.9

Q ss_pred             EEEEeCCCCEEEEEe--CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCE
Q 014977           49 SVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRC  126 (415)
Q Consensus        49 ~l~~sp~g~~la~g~--d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~  126 (415)
                      +..|.++...|.-..  .+.|.-|+.++.+.... ..  .............+.++++.        ..+.+++.+++..
T Consensus        29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~-~~--p~~~~~~~~~d~~g~Lv~~~--------~g~~~~~~~~~~~   97 (307)
T COG3386          29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRVF-PS--PGGFSSGALIDAGGRLIACE--------HGVRLLDPDTGGK   97 (307)
T ss_pred             CccCcCCCCEEEEEeCCCCeEEEecCCcCceEEE-EC--CCCcccceeecCCCeEEEEc--------cccEEEeccCCce
Confidence            345778877666655  78888888775433222 11  11112223344455555542        5567777766665


Q ss_pred             EEEEE------ccCceeEEEEcCCeEEEEeC--------------CeEEEEEcCCceeeeEEeccCCCcceEEEecCCCc
Q 014977          127 IGEFA------FRSDVRSVKLSRDRIVVVLE--------------HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSST  186 (415)
Q Consensus       127 ~~~~~------~~~~i~~l~~~~~~~~~~~d--------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (415)
                      +..+.      .....+++.+.|+|.+.+.+              |.++.+|. .+..+..+..+..  ....++++|++
T Consensus        98 ~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~--~~NGla~SpDg  174 (307)
T COG3386          98 ITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLT--IPNGLAFSPDG  174 (307)
T ss_pred             eEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEE--ecCceEECCCC
Confidence            43332      13456788899998888722              22444443 4444444443222  22345555566


Q ss_pred             eEEEEeCCccCeEEEEEcC---C----cc-eEEEecCccceEEEEeCCCCCEEEEEeCCC-cEEEEEECCCCcEEEEEec
Q 014977          187 SVLACPGLQRGQVRIEHFG---L----NM-IKLINAHDSHIACFTLTLDGLLLATASTRG-TLIRIFNTVDGTRLQEVRR  257 (415)
Q Consensus       187 ~~l~~~g~~dg~v~i~~~~---~----~~-~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg-~~I~vwd~~~~~~~~~~~~  257 (415)
                      +.+.++-+..+.|.-+...   +    +. ...+....+..-.++...+|.+.+++-.+| . |.+|+.. |+++..+..
T Consensus       175 ~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~-v~~~~pd-G~l~~~i~l  252 (307)
T COG3386         175 KTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGR-VVRFNPD-GKLLGEIKL  252 (307)
T ss_pred             CEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCce-EEEECCC-CcEEEEEEC
Confidence            5666655555666664433   1    11 122223345666778888898776555555 6 9999976 999988886


Q ss_pred             CCCcccEEEEEeC-CCCCEEEEEe
Q 014977          258 GVDRAEIYSIALS-PNVQWLAVAS  280 (415)
Q Consensus       258 ~~~~~~v~~l~~s-pdg~~l~s~s  280 (415)
                        ....+++++|- |+.+.|...+
T Consensus       253 --P~~~~t~~~FgG~~~~~L~iTs  274 (307)
T COG3386         253 --PVKRPTNPAFGGPDLNTLYITS  274 (307)
T ss_pred             --CCCCCccceEeCCCcCEEEEEe
Confidence              33567888885 4455554433

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.76  E-value=0.0015  Score=63.84  Aligned_cols=173  Identities=14%  Similarity=0.113  Sum_probs=111.8

Q ss_pred             eEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCc
Q 014977           99 ILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLR  175 (415)
Q Consensus        99 ~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~  175 (415)
                      ..+++-|...     |.|++.+. .+.....+.|...      ..+|.+++   .||+|.|..+-+.+...++.-+ .++
T Consensus        49 ~~~~~~GtH~-----g~v~~~~~-~~~~~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~-rpi  115 (846)
T KOG2066|consen   49 DKFFALGTHR-----GAVYLTTC-QGNPKTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFK-RPI  115 (846)
T ss_pred             cceeeecccc-----ceEEEEec-CCccccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEecC-Ccc
Confidence            3455555555     88988884 3333333334333      56788887   6999999998877776666543 345


Q ss_pred             ceEEEecC--C-CceEEEEeCCccCeEEE----EEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCC
Q 014977          176 GLCCLSHH--S-STSVLACPGLQRGQVRI----EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVD  248 (415)
Q Consensus       176 ~~~~~~~~--~-~~~~l~~~g~~dg~v~i----~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~  248 (415)
                      ..++++|+  . ..+.++ +|+..| +.+    |..+...+ .+....++|.++.|  .|.++|-++.+|  |+|||+.+
T Consensus       116 ksial~Pd~~~~~sk~fv-~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W--~g~lIAWand~G--v~vyd~~~  188 (846)
T KOG2066|consen  116 KSIALHPDFSRQQSKQFV-SGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKW--RGNLIAWANDDG--VKVYDTPT  188 (846)
T ss_pred             eeEEeccchhhhhhhhee-ecCcce-EEEehhhhhcCccce-eeecCccceEEEEe--cCcEEEEecCCC--cEEEeccc
Confidence            56666665  1 123344 477777 555    33232333 46677899999999  578999999887  89999999


Q ss_pred             CcEEEEEecCCCc----ccEEEEEeCCCCCEEEEEeCCCeEEEEEceec
Q 014977          249 GTRLQEVRRGVDR----AEIYSIALSPNVQWLAVASDKGTVHIFSLRVR  293 (415)
Q Consensus       249 ~~~~~~~~~~~~~----~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~  293 (415)
                      ++.+..++.....    .-...+.|.++.+ |+.|- ..+|+|..++.+
T Consensus       189 ~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW-~d~v~i~~I~~~  235 (846)
T KOG2066|consen  189 RQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGW-GDSVKICSIKKR  235 (846)
T ss_pred             cceeeccCCCCCCCCcccCCCceEecCCCe-EEEec-CCeEEEEEEecc
Confidence            9888777653110    1234577876654 44444 445999999943

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.74  E-value=0.011  Score=55.15  Aligned_cols=231  Identities=12%  Similarity=0.056  Sum_probs=127.4

Q ss_pred             CCceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCC----------------CeeEEEEeeeCCeEEEEecCC
Q 014977           44 EIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSG----------------GFRIVEMLFRCNILALVGAGD  107 (415)
Q Consensus        44 ~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~l~s~~~  107 (415)
                      ...+....|+|+|+.+|...++.|.+++..+... .+.+..+.                -..-..+.|+|++..|+....
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~-~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~  120 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQE-TQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF  120 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEE-EESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred             ccccccceeecCCCeeEEEecCceEEEECCCCCe-EEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence            5678899999999999999999999998866532 22222110                011234668888766654432


Q ss_pred             CCC----------------C---------------CCCeEEEEECCCCCEEE-EEE-----ccCceeEEEEcCCeE-EEE
Q 014977          108 NSQ----------------Y---------------PPTKVIIWDDHQSRCIG-EFA-----FRSDVRSVKLSRDRI-VVV  149 (415)
Q Consensus       108 d~~----------------~---------------~~~~i~vwd~~~~~~~~-~~~-----~~~~i~~l~~~~~~~-~~~  149 (415)
                      |..                |               ..-.+.|+|+.+++... ...     ....+..+.|.+++. +++
T Consensus       121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~  200 (353)
T PF00930_consen  121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV  200 (353)
T ss_dssp             E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred             CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence            200                0               01245667777665431 111     245678889999888 444


Q ss_pred             --e-----CCeEEEEEcCCceeeeEEeccCC----CcceEEEe-cCCCceEEEEeCCccCeEEE--EEcCCcceEEEecC
Q 014977          150 --L-----EHKIYVYSFVDLKLLHQIETLAN----LRGLCCLS-HHSSTSVLACPGLQRGQVRI--EHFGLNMIKLINAH  215 (415)
Q Consensus       150 --~-----d~~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~l~~~g~~dg~v~i--~~~~~~~~~~~~~~  215 (415)
                        .     ...+.++|..+++....+.....    ......+. .+. ..++.. ...+|.-+|  .+..+...+.+...
T Consensus       201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~-~~~l~~-s~~~G~~hly~~~~~~~~~~~lT~G  278 (353)
T PF00930_consen  201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDG-NEFLWI-SERDGYRHLYLYDLDGGKPRQLTSG  278 (353)
T ss_dssp             EEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTS-SEEEEE-EETTSSEEEEEEETTSSEEEESS-S
T ss_pred             EEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCC-CEEEEE-EEcCCCcEEEEEcccccceeccccC
Confidence              1     23567778877655433322211    11222332 333 334333 336776666  55666666677766


Q ss_pred             ccceEE-EEeCCCCCEEE-EEeCCC--c-EEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEE
Q 014977          216 DSHIAC-FTLTLDGLLLA-TASTRG--T-LIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVA  279 (415)
Q Consensus       216 ~~~i~~-l~~sp~g~~l~-s~s~dg--~-~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~  279 (415)
                      .-.|.. +.++++++.|. ++..++  . .|+.-++..+..+..+...  ......+.|||++++++..
T Consensus       279 ~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~--~~~~~~~~~Spdg~y~v~~  345 (353)
T PF00930_consen  279 DWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCE--DGDHYSASFSPDGKYYVDT  345 (353)
T ss_dssp             SS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTT--SSTTEEEEE-TTSSEEEEE
T ss_pred             ceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCC--CCCceEEEECCCCCEEEEE
Confidence            777754 67888877554 454422  2 2666666624445566542  2222689999999988754

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.69  E-value=0.021  Score=49.87  Aligned_cols=197  Identities=11%  Similarity=0.117  Sum_probs=103.1

Q ss_pred             eccCCCeeEEEEeeeCC-eEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEc--cCceeEEEEcCCeEEEE---eCCeEE
Q 014977           82 DLKSGGFRIVEMLFRCN-ILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAF--RSDVRSVKLSRDRIVVV---LEHKIY  155 (415)
Q Consensus        82 ~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~--~~~i~~l~~~~~~~~~~---~d~~i~  155 (415)
                      .+.+-...+..+.|.++ +.+++.....     +.|..++. +|+.++.+..  .+...+|++..++.+++   .++.+.
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~-----~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~   89 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEP-----GEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLY   89 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTT-----TEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEE
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCC-----CEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEE
Confidence            34444455888999985 5566666655     88988885 6889988873  46788999999998888   378899


Q ss_pred             EEEcCCc------eeeeEEe--cc-CCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC----cceEEEe--------c
Q 014977          156 VYSFVDL------KLLHQIE--TL-ANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL----NMIKLIN--------A  214 (415)
Q Consensus       156 iwd~~~~------~~~~~~~--~~-~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~----~~~~~~~--------~  214 (415)
                      ++++...      .....+.  .. ......-.+++++.+..++++ .+..-..++....    ..+....        .
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~-kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~  168 (248)
T PF06977_consen   90 IFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVA-KERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKL  168 (248)
T ss_dssp             EEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEE-EESSSEEEEEEESTT-SS--EEEE-HHHH-HT-
T ss_pred             EEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEE-eCCCChhhEEEccccCccceeeccccccccccc
Confidence            9988321      1112222  11 122234556666554333332 2343444433322    1111111        1


Q ss_pred             CccceEEEEeCCCC-CEEEEEeCCCcEEEEEECCCCcEEEEEec--CCCc-----ccEEEEEeCCCCCEEEEEeCCCeEE
Q 014977          215 HDSHIACFTLTLDG-LLLATASTRGTLIRIFNTVDGTRLQEVRR--GVDR-----AEIYSIALSPNVQWLAVASDKGTVH  286 (415)
Q Consensus       215 ~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~~~~~~~~~--~~~~-----~~v~~l~~spdg~~l~s~s~dg~i~  286 (415)
                      .-..+.+++++|.. .+++....... |..+| .+|+.+..+.-  +.|.     ...-.|+|.++|++. ..++-+..+
T Consensus       169 ~~~d~S~l~~~p~t~~lliLS~es~~-l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY-IvsEpNlfy  245 (248)
T PF06977_consen  169 FVRDLSGLSYDPRTGHLLILSDESRL-LLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY-IVSEPNLFY  245 (248)
T ss_dssp             -SS---EEEEETTTTEEEEEETTTTE-EEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE-EEETTTEEE
T ss_pred             eeccccceEEcCCCCeEEEEECCCCe-EEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE-EEcCCceEE
Confidence            23457789999864 55666666666 99999 67887665543  1111     246789999999654 556777666


Q ss_pred             EE
Q 014977          287 IF  288 (415)
Q Consensus       287 vw  288 (415)
                      +|
T Consensus       246 ~f  247 (248)
T PF06977_consen  246 RF  247 (248)
T ss_dssp             EE
T ss_pred             Ee
Confidence            65

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.64  E-value=0.005  Score=58.55  Aligned_cols=71  Identities=15%  Similarity=0.245  Sum_probs=55.3

Q ss_pred             ceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC
Q 014977          176 GLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG  249 (415)
Q Consensus       176 ~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~  249 (415)
                      .+.+.+++|+...++. |+.||.|.+|+...+..... ...-..+.++|+|+|.++++|+..|. +.+||+.-.
T Consensus       261 ~v~~ca~sp~E~kLvl-GC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGe-lQ~FD~ALs  331 (545)
T PF11768_consen  261 QVICCARSPSEDKLVL-GCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGE-LQCFDMALS  331 (545)
T ss_pred             cceEEecCcccceEEE-EecCCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCce-EEEEEeecC
Confidence            4555666666666766 77999999998876654433 34566789999999999999999999 999998644

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.64  E-value=0.0015  Score=63.88  Aligned_cols=92  Identities=24%  Similarity=0.271  Sum_probs=72.5

Q ss_pred             eEEEEeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEE
Q 014977          187 SVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYS  266 (415)
Q Consensus       187 ~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~  266 (415)
                      .+++. |..+|.|++....+.. .....|...      ..+|.++++|+.||. |.|-.+-+.+...++.   ...++.+
T Consensus        50 ~~~~~-GtH~g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGk-v~I~sl~~~~~~~~~d---f~rpiks  117 (846)
T KOG2066|consen   50 KFFAL-GTHRGAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGK-VVIGSLFTDDEITQYD---FKRPIKS  117 (846)
T ss_pred             ceeee-ccccceEEEEecCCcc-ccccccccc------ccCCceEEEecCCCc-EEEeeccCCccceeEe---cCCccee
Confidence            45666 8899999998877776 444445443      678999999999999 9999998888777666   4458999


Q ss_pred             EEeCCC-----CCEEEEEeCCCeEEEEEce
Q 014977          267 IALSPN-----VQWLAVASDKGTVHIFSLR  291 (415)
Q Consensus       267 l~~spd-----g~~l~s~s~dg~i~vwd~~  291 (415)
                      ++++|+     .+.+++|+..| +.++.-+
T Consensus       118 ial~Pd~~~~~sk~fv~GG~ag-lvL~er~  146 (846)
T KOG2066|consen  118 IALHPDFSRQQSKQFVSGGMAG-LVLSERN  146 (846)
T ss_pred             EEeccchhhhhhhheeecCcce-EEEehhh
Confidence            999998     56788999888 7777643

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.59  E-value=0.037  Score=51.40  Aligned_cols=225  Identities=14%  Similarity=0.082  Sum_probs=99.9

Q ss_pred             CCCEEEEEe--CCcEEEEEccCC--ceeEEEeccC-------CCeeEEEEeeeCCeEEEEecCCCC-CCCCCeEEEEECC
Q 014977           55 DYGCFAAGT--SCGFRIYNCEPF--KETFRRDLKS-------GGFRIVEMLFRCNILALVGAGDNS-QYPPTKVIIWDDH  122 (415)
Q Consensus        55 ~g~~la~g~--d~~v~iw~~~~~--~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~s~~~d~-~~~~~~i~vwd~~  122 (415)
                      +.++|+..+  .+.|.|.|+.+.  +..+.+.+..       +-.....+.--+++.+++++-.++ ....|.+.+.|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            466888777  889999999742  3333333211       111222223335675555432221 1244778888877


Q ss_pred             CCCEEEEEEc----cCceeEEEEcCCeEEEE-----------------------eCCeEEEEEcCCceeeeEEeccCCCc
Q 014977          123 QSRCIGEFAF----RSDVRSVKLSRDRIVVV-----------------------LEHKIYVYSFVDLKLLHQIETLANLR  175 (415)
Q Consensus       123 ~~~~~~~~~~----~~~i~~l~~~~~~~~~~-----------------------~d~~i~iwd~~~~~~~~~~~~~~~~~  175 (415)
                      +.+.......    ...-.++.+.|..+.++                       ...++++||+.+.+.++++.......
T Consensus       166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~  245 (461)
T PF05694_consen  166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ  245 (461)
T ss_dssp             T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred             cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence            7777666652    22345566666554444                       15689999999999999997765432


Q ss_pred             ce--EEEecCCCceEEEEeCCccCeEEEEEc-C-C----cceEEEecC-----------------ccceEEEEeCCCCCE
Q 014977          176 GL--CCLSHHSSTSVLACPGLQRGQVRIEHF-G-L----NMIKLINAH-----------------DSHIACFTLTLDGLL  230 (415)
Q Consensus       176 ~~--~~~~~~~~~~~l~~~g~~dg~v~i~~~-~-~----~~~~~~~~~-----------------~~~i~~l~~sp~g~~  230 (415)
                      ..  +.+..+|+..+=.+.+....+|..|-. . +    +.+..+...                 ..-|+.|.+|.|.++
T Consensus       246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf  325 (461)
T PF05694_consen  246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF  325 (461)
T ss_dssp             EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred             ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence            23  445556655443322224455555433 1 1    222222211                 234789999999999


Q ss_pred             EEEEeC-CCcEEEEEECCCCc---EEEEEecC--------------CCcccEEEEEeCCCCCEEEEEe
Q 014977          231 LATAST-RGTLIRIFNTVDGT---RLQEVRRG--------------VDRAEIYSIALSPNVQWLAVAS  280 (415)
Q Consensus       231 l~s~s~-dg~~I~vwd~~~~~---~~~~~~~~--------------~~~~~v~~l~~spdg~~l~s~s  280 (415)
                      |..++. .|. |+.||+.+-.   +..++.-+              .-.+...-+..|-||+.|...+
T Consensus       326 LYvs~W~~Gd-vrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  326 LYVSNWLHGD-VRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             EEEEETTTTE-EEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred             EEEEcccCCc-EEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence            877664 677 9999997642   33332211              0112346678888888887654

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.58  E-value=0.07  Score=50.18  Aligned_cols=80  Identities=16%  Similarity=0.200  Sum_probs=55.5

Q ss_pred             CccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEe-CCC----------------CCEE-
Q 014977          215 HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIAL-SPN----------------VQWL-  276 (415)
Q Consensus       215 ~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~-spd----------------g~~l-  276 (415)
                      ....+.+|+.+|++++.|+...-|. |.++|+.++..++.+++.. ++.+.-+.- .+.                ..+| 
T Consensus       306 ~~R~~~~i~~sP~~~laA~tDslGR-V~LiD~~~~~vvrmWKGYR-dAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~Lv  383 (415)
T PF14655_consen  306 SKREGESICLSPSGRLAAVTDSLGR-VLLIDVARGIVVRMWKGYR-DAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLV  383 (415)
T ss_pred             CCceEEEEEECCCCCEEEEEcCCCc-EEEEECCCChhhhhhccCc-cceEEEEEeecccccccccccccCCCCcceEEEE
Confidence            3445788999999998888877788 9999999998888887731 122211111 111                1123 


Q ss_pred             EEEeCCCeEEEEEceecccC
Q 014977          277 AVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       277 ~s~s~dg~i~vwd~~~~~~~  296 (415)
                      +-+-..|.|.||.++++.+.
T Consensus       384 IyaprRg~lEvW~~~~g~Rv  403 (415)
T PF14655_consen  384 IYAPRRGILEVWSMRQGPRV  403 (415)
T ss_pred             EEeccCCeEEEEecCCCCEE
Confidence            34566899999999998865

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.53  E-value=0.063  Score=48.36  Aligned_cols=234  Identities=16%  Similarity=0.150  Sum_probs=106.6

Q ss_pred             CCCceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEec---cC-CCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEE
Q 014977           43 DEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDL---KS-GGFRIVEMLFRCNILALVGAGDNSQYPPTKVII  118 (415)
Q Consensus        43 h~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~v  118 (415)
                      -...+..|.|..+..-+++|..+.  |+....+++......   .. .......+.|..+..++++ ..      + +.+
T Consensus        15 t~~~l~dV~F~d~~~G~~VG~~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG-~~------g-~ll   84 (302)
T PF14870_consen   15 TDKPLLDVAFVDPNHGWAVGAYGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVG-EP------G-LLL   84 (302)
T ss_dssp             -SS-EEEEEESSSS-EEEEETTTE--EEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEE-ET------T-EEE
T ss_pred             CCCceEEEEEecCCEEEEEecCCE--EEEECCCCccccccccCCCccceeeEEEEEecCCceEEEc-CC------c-eEE
Confidence            345799999997777888887765  555555444433221   11 1234556777766555443 22      3 333


Q ss_pred             EECCCCCEEEEEE----ccCceeEEEEcCCeEE-EE-eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEe
Q 014977          119 WDDHQSRCIGEFA----FRSDVRSVKLSRDRIV-VV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP  192 (415)
Q Consensus       119 wd~~~~~~~~~~~----~~~~i~~l~~~~~~~~-~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  192 (415)
                      .....|+.-..+.    .......+....++.. ++ ..+.  ||...++-..-..........+..+...+++.+++++
T Consensus        85 ~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~--iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs  162 (302)
T PF14870_consen   85 HTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRGA--IYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVS  162 (302)
T ss_dssp             EESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT----EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEE
T ss_pred             EecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCc--EEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEE
Confidence            3334454333332    2233333433333333 33 2333  3333332211111111122345666777888888763


Q ss_pred             CCccCeEEE-EEcCCcceEEE-ecCccceEEEEeCCCCCEEEEEeCCCcEEEEEEC-CCCcEEEE--EecCCCcccEEEE
Q 014977          193 GLQRGQVRI-EHFGLNMIKLI-NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNT-VDGTRLQE--VRRGVDRAEIYSI  267 (415)
Q Consensus       193 g~~dg~v~i-~~~~~~~~~~~-~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~-~~~~~~~~--~~~~~~~~~v~~l  267 (415)
                        ..|.+.+ |+.....-... ......|.+|.|.|++.+.+.+ ..|. |++=+. ...+....  .......-.+.++
T Consensus       163 --~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~-~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~  238 (302)
T PF14870_consen  163 --SRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQ-IQFSDDPDDGETWSEPIIPIKTNGYGILDL  238 (302)
T ss_dssp             --TTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTE-EEEEE-TTEEEEE---B-TTSS--S-EEEE
T ss_pred             --CcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcE-EEEccCCCCccccccccCCcccCceeeEEE
Confidence              5777777 66554332222 3356889999999998876654 6676 777662 22222111  1111122258999


Q ss_pred             EeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977          268 ALSPNVQWLAVASDKGTVHIFSLRVRV  294 (415)
Q Consensus       268 ~~spdg~~l~s~s~dg~i~vwd~~~~~  294 (415)
                      +|.+++...++|+ .|++ +...+.|+
T Consensus       239 a~~~~~~~wa~gg-~G~l-~~S~DgGk  263 (302)
T PF14870_consen  239 AYRPPNEIWAVGG-SGTL-LVSTDGGK  263 (302)
T ss_dssp             EESSSS-EEEEES-TT-E-EEESSTTS
T ss_pred             EecCCCCEEEEeC-CccE-EEeCCCCc
Confidence            9999877776555 5533 33344443

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.53  E-value=0.00048  Score=65.47  Aligned_cols=93  Identities=18%  Similarity=0.253  Sum_probs=75.4

Q ss_pred             ceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEecCccceE-EEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEE
Q 014977          176 GLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIA-CFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQE  254 (415)
Q Consensus       176 ~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~-~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~  254 (415)
                      .+..+.|+|.-.++|. +..+|.|.+...+.+.+.++..+...++ +++|.|||++||.|-.||+ |++.|+.++..+..
T Consensus        22 ~i~~~ewnP~~dLiA~-~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~-I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   22 NIKRIEWNPKMDLIAT-RTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGT-IRLHDVEKGGRLVS   99 (665)
T ss_pred             ceEEEEEcCccchhhe-eccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCe-EEEEEccCCCceec
Confidence            4556667777777776 6689999997777888888887877777 9999999999999999999 99999999988776


Q ss_pred             EecCCCcccEEEEEeCC
Q 014977          255 VRRGVDRAEIYSIALSP  271 (415)
Q Consensus       255 ~~~~~~~~~v~~l~~sp  271 (415)
                      +... ....|.++.|++
T Consensus       100 ~~~s-~e~~is~~~w~~  115 (665)
T KOG4640|consen  100 FLFS-VETDISKGIWDR  115 (665)
T ss_pred             cccc-cccchheeeccc
Confidence            4221 345788888864

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.53  E-value=0.00033  Score=62.89  Aligned_cols=90  Identities=16%  Similarity=0.181  Sum_probs=73.6

Q ss_pred             EEcCCcceEEEecCccceEEEEeCCCCC-EEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCC-CEEEEE
Q 014977          202 EHFGLNMIKLINAHDSHIACFTLTLDGL-LLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNV-QWLAVA  279 (415)
Q Consensus       202 ~~~~~~~~~~~~~~~~~i~~l~~sp~g~-~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg-~~l~s~  279 (415)
                      ...+.+....+..+...|..++|+|..+ ++..++.+.. |+|.|+++...+..+..  + ..+++++|.-|. .+|..|
T Consensus       179 ~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nk-iki~dlet~~~vssy~a--~-~~~wSC~wDlde~h~IYaG  254 (463)
T KOG1645|consen  179 ESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNK-IKIMDLETSCVVSSYIA--Y-NQIWSCCWDLDERHVIYAG  254 (463)
T ss_pred             ccCCcchhhcccccchhhhhhccCccccceeeeeccCce-EEEEecccceeeeheec--c-CCceeeeeccCCcceeEEe
Confidence            3344445556677888999999999877 7888898888 99999999988888876  3 579999999765 467788


Q ss_pred             eCCCeEEEEEceeccc
Q 014977          280 SDKGTVHIFSLRVRVV  295 (415)
Q Consensus       280 s~dg~i~vwd~~~~~~  295 (415)
                      -..|.|.|||++..+.
T Consensus       255 l~nG~VlvyD~R~~~~  270 (463)
T KOG1645|consen  255 LQNGMVLVYDMRQPEG  270 (463)
T ss_pred             ccCceEEEEEccCCCc
Confidence            8899999999998764

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.51  E-value=0.016  Score=58.52  Aligned_cols=129  Identities=13%  Similarity=0.210  Sum_probs=87.1

Q ss_pred             CeEEEEECCCCCEEEEEEccC--ceeEEEEc-------CCeEEEE-eCCeEEEEEcCCc--eeee-EEeccCCCcceEEE
Q 014977          114 TKVIIWDDHQSRCIGEFAFRS--DVRSVKLS-------RDRIVVV-LEHKIYVYSFVDL--KLLH-QIETLANLRGLCCL  180 (415)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~~~~--~i~~l~~~-------~~~~~~~-~d~~i~iwd~~~~--~~~~-~~~~~~~~~~~~~~  180 (415)
                      +.|.-.|++.|+.+.+.....  +|..++-.       +...++. .++.+..||.+-.  +++. ............|+
T Consensus       504 ~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~  583 (794)
T PF08553_consen  504 NKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCF  583 (794)
T ss_pred             CceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEE
Confidence            789999999999999998433  34444322       2333444 7899999998643  2221 11111222356677


Q ss_pred             ecCCCceEEEEeCCccCeEEEEEcCCcc-eEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEEC
Q 014977          181 SHHSSTSVLACPGLQRGQVRIEHFGLNM-IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNT  246 (415)
Q Consensus       181 ~~~~~~~~l~~~g~~dg~v~i~~~~~~~-~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~  246 (415)
                      +...+|. ||+ |+.+|.|++++..+.. ...+.+-..+|..|..+.||++|++.+.. . +.|++.
T Consensus       584 aTt~~G~-iav-gs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t-y-LlLi~t  646 (794)
T PF08553_consen  584 ATTEDGY-IAV-GSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT-Y-LLLIDT  646 (794)
T ss_pred             EecCCce-EEE-EeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc-e-EEEEEE
Confidence            7777774 444 7899999998765543 33455678999999999999988766643 4 777765

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>smart00320 WD40 WD40 repeats

Probab=97.45  E-value=0.00051  Score=39.96  Aligned_cols=38  Identities=32%  Similarity=0.587  Sum_probs=32.3

Q ss_pred             cEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEE
Q 014977          250 TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFS  289 (415)
Q Consensus       250 ~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd  289 (415)
                      +.+..+..  |...|.++.|.+++.++++++.|+.+++|+
T Consensus         3 ~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKG--HTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEe--cCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            44556665  677899999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.43  E-value=4.1e-05  Score=72.54  Aligned_cols=195  Identities=14%  Similarity=0.189  Sum_probs=115.0

Q ss_pred             EEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEE-EEEE--ccCceeEEEEcCC-eEEEE-------eCCeEEEEE
Q 014977           90 IVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCI-GEFA--FRSDVRSVKLSRD-RIVVV-------LEHKIYVYS  158 (415)
Q Consensus        90 ~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~-~~~~--~~~~i~~l~~~~~-~~~~~-------~d~~i~iwd  158 (415)
                      +++..+..+..+++.|..+     |.|.+-.++....- .++.  +....++++|++- ...++       .|..+.|||
T Consensus        61 cva~~y~~d~cIlavG~at-----G~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   61 CVASFYGNDRCILAVGSAT-----GNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             eehhhcCCchhhhhhcccc-----CceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            3344444454566666665     88888876554322 3333  6778899999884 33333       478899999


Q ss_pred             cCCc--ee--eeEEec-cCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEecCccceEEEEeCC-CCCEEE
Q 014977          159 FVDL--KL--LHQIET-LANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTL-DGLLLA  232 (415)
Q Consensus       159 ~~~~--~~--~~~~~~-~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp-~g~~l~  232 (415)
                      +.++  .+  ...+.. ...  ....++|..+.+++. +|.....+.+.+.+.............+..+..+| .+.+++
T Consensus       136 i~s~ltvPke~~~fs~~~l~--gqns~cwlrd~klvl-aGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~c  212 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSSSTLD--GQNSVCWLRDTKLVL-AGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFC  212 (783)
T ss_pred             cccccCCCcccccccccccc--CccccccccCcchhh-cccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCcee
Confidence            9765  11  111222 111  222445555555554 48778788886666444333333344566677888 777888


Q ss_pred             EEeCCCcEEEEEEC-CCCc-EEEEEecCC--CcccEEEEEeCCCCC-EEEEEe-CCCeEEEEEceecc
Q 014977          233 TASTRGTLIRIFNT-VDGT-RLQEVRRGV--DRAEIYSIALSPNVQ-WLAVAS-DKGTVHIFSLRVRV  294 (415)
Q Consensus       233 s~s~dg~~I~vwd~-~~~~-~~~~~~~~~--~~~~v~~l~~spdg~-~l~s~s-~dg~i~vwd~~~~~  294 (415)
                      +-. ||. |.+||. ..-+ ++..+....  ....+..++|+|... .+++.+ ..++|+++|+....
T Consensus       213 s~~-dg~-iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~  278 (783)
T KOG1008|consen  213 SNS-DGD-IAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVG  278 (783)
T ss_pred             ccc-cCc-eeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccC
Confidence            766 888 999993 3222 222222100  112488999999533 344444 45789999987644

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.42  E-value=0.00071  Score=65.14  Aligned_cols=113  Identities=15%  Similarity=0.188  Sum_probs=85.4

Q ss_pred             ceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEec--CccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEE-
Q 014977          176 GLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINA--HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRL-  252 (415)
Q Consensus       176 ~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~--~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~-  252 (415)
                      ...++...  ..+++. |+.-|.++++...+...+.++.  ..+.+..+..+++..++|.|+..|. |.++-+..+.+. 
T Consensus        37 ~lTc~dst--~~~l~~-GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~-V~v~ql~~~~p~~  112 (726)
T KOG3621|consen   37 KLTCVDAT--EEYLAM-GSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGR-VSVFQLNKELPRD  112 (726)
T ss_pred             EEEEeecC--CceEEE-ecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCce-EEeehhhccCCCc
Confidence            34455444  456766 7789999999888877666554  5566777888999988999998888 999987664321 


Q ss_pred             --EEEe-cCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEcee
Q 014977          253 --QEVR-RGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV  292 (415)
Q Consensus       253 --~~~~-~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~  292 (415)
                        ..-. ...|...|++++|++++..+++|...|.|..-.+..
T Consensus       113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence              1111 112567899999999999999999999999998888

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.38  E-value=0.035  Score=51.87  Aligned_cols=170  Identities=11%  Similarity=0.077  Sum_probs=89.4

Q ss_pred             CeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCC---------------Ccc
Q 014977          114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLAN---------------LRG  176 (415)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~---------------~~~  176 (415)
                      +.+.++|+.+++..........+....|+|+|..++  .++.|+++++.+++..+.-.....               ...
T Consensus        23 ~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~  102 (353)
T PF00930_consen   23 GDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDR  102 (353)
T ss_dssp             EEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSS
T ss_pred             eeEEEEecCCCceEECcCCccccccceeecCCCeeEEEecCceEEEECCCCCeEEeccccceeEEcCccceecccccccc
Confidence            688999999876554444567899999999999988  899999999877644332211110               001


Q ss_pred             eEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEecC--cc---ceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcE
Q 014977          177 LCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAH--DS---HIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR  251 (415)
Q Consensus       177 ~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~--~~---~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~  251 (415)
                      ..++-|+|+++.||+.-..+..|..       +......  ..   .+..+.+---|.-...    -. +.|+|+.+++.
T Consensus       103 ~~~~~WSpd~~~la~~~~d~~~v~~-------~~~~~~~~~~~~yp~~~~~~YPk~G~~np~----v~-l~v~~~~~~~~  170 (353)
T PF00930_consen  103 RSAVWWSPDSKYLAFLRFDEREVPE-------YPLPDYSPPDSQYPEVESIRYPKAGDPNPR----VS-LFVVDLASGKT  170 (353)
T ss_dssp             SBSEEE-TTSSEEEEEEEE-TTS-E-------EEEEEESSSTESS-EEEEEE--BTTS---E----EE-EEEEESSSTCC
T ss_pred             ccceEECCCCCEEEEEEECCcCCce-------EEeeccCCccccCCcccccccCCCCCcCCc----eE-EEEEECCCCcE
Confidence            2344566666677663322322222       1111111  11   2233333212221111    12 77789988865


Q ss_pred             EE-EEec--CCCcccEEEEEeCCCCCEEEEE--eCCC---eEEEEEceeccc
Q 014977          252 LQ-EVRR--GVDRAEIYSIALSPNVQWLAVA--SDKG---TVHIFSLRVRVV  295 (415)
Q Consensus       252 ~~-~~~~--~~~~~~v~~l~~spdg~~l~s~--s~dg---~i~vwd~~~~~~  295 (415)
                      .. ....  ......+..+.|.++++.|+..  ..+.   .+.++|..+++.
T Consensus       171 ~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~  222 (353)
T PF00930_consen  171 TELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGET  222 (353)
T ss_dssp             CEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTC
T ss_pred             EEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCce
Confidence            31 2220  1134578999999999844433  2222   466666666543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>smart00320 WD40 WD40 repeats

Probab=97.38  E-value=0.00061  Score=39.60  Aligned_cols=37  Identities=30%  Similarity=0.617  Sum_probs=32.8

Q ss_pred             ceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEE
Q 014977          208 MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFN  245 (415)
Q Consensus       208 ~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd  245 (415)
                      ....+..|...|.++.|++++.++++++.|+. +++||
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~-~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGT-IKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCCCEEEEecCCCe-EEEcC
Confidence            45566788899999999999999999999999 99996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.37  E-value=0.027  Score=41.90  Aligned_cols=65  Identities=23%  Similarity=0.288  Sum_probs=48.3

Q ss_pred             eEEEEeCC---CC-CEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEc
Q 014977          219 IACFTLTL---DG-LLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSL  290 (415)
Q Consensus       219 i~~l~~sp---~g-~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~  290 (415)
                      |++|++..   +| ..|++|+.|.. |++|+  ..+.+.++..   ...|+.|.-... ..++.+-.+|+|-+|+-
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~-IRvf~--~~e~~~Ei~e---~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~   70 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFE-IRVFK--GDEIVAEITE---TDKVTSLCSLGG-GRFAYALANGTVGVYDR   70 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcE-EEEEe--CCcEEEEEec---ccceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence            45555543   44 47999999999 99997  4577777774   457888877666 56788888999988864

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.35  E-value=0.08  Score=45.43  Aligned_cols=32  Identities=13%  Similarity=0.242  Sum_probs=25.6

Q ss_pred             EeCCCCEEEEEe-CCcEEEEEccCCceeEEEec
Q 014977           52 WNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDL   83 (415)
Q Consensus        52 ~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~   83 (415)
                      ..+++.++.+|+ |+..+..|..+...++....
T Consensus       101 ~d~~~glIycgshd~~~yalD~~~~~cVykskc  133 (354)
T KOG4649|consen  101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC  133 (354)
T ss_pred             EcCCCceEEEecCCCcEEEecccccceEEeccc
Confidence            457888999999 99999999888777776443

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.34  E-value=0.091  Score=45.95  Aligned_cols=195  Identities=14%  Similarity=0.040  Sum_probs=95.2

Q ss_pred             CCCCCCceEEEEEeCCCCEEEEEe--CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977           40 SDVDEIELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (415)
Q Consensus        40 ~~~h~~~V~~l~~sp~g~~la~g~--d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~  117 (415)
                      ..+-...+..++|+|+...|++-.  .+.|..++.+ ++.+.+..+ .+....-.+.+..++.++++...+     +.+.
T Consensus        17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l-~g~~D~EgI~y~g~~~~vl~~Er~-----~~L~   89 (248)
T PF06977_consen   17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPL-DGFGDYEGITYLGNGRYVLSEERD-----QRLY   89 (248)
T ss_dssp             -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE--SS-SSEEEEEE-STTEEEEEETTT-----TEEE
T ss_pred             CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeC-CCCCCceeEEEECCCEEEEEEcCC-----CcEE
Confidence            344455699999999866555544  5555555543 233333444 334455667788888888887666     8999


Q ss_pred             EEECCCCC------EEEEEE------ccCceeEEEEcCC-eEEEE--eCCeEEEEEcCC---ceeeeEEe--cc----CC
Q 014977          118 IWDDHQSR------CIGEFA------FRSDVRSVKLSRD-RIVVV--LEHKIYVYSFVD---LKLLHQIE--TL----AN  173 (415)
Q Consensus       118 vwd~~~~~------~~~~~~------~~~~i~~l~~~~~-~~~~~--~d~~i~iwd~~~---~~~~~~~~--~~----~~  173 (415)
                      ++++....      ....+.      ....+..++|++. +.+++  ...-..+|.+..   ...+....  ..    ..
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (248)
T PF06977_consen   90 IFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF  169 (248)
T ss_dssp             EEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred             EEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccce
Confidence            88873321      122232      2356889999985 33333  344444554432   11111111  00    01


Q ss_pred             CcceEEEecCCCc-eEEEEeCCccCeEEEEEcCCcceEEEecCc---------cceEEEEeCCCCCEEEEEeCCCcEEEE
Q 014977          174 LRGLCCLSHHSST-SVLACPGLQRGQVRIEHFGLNMIKLINAHD---------SHIACFTLTLDGLLLATASTRGTLIRI  243 (415)
Q Consensus       174 ~~~~~~~~~~~~~-~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~---------~~i~~l~~sp~g~~l~s~s~dg~~I~v  243 (415)
                      .....+++++|.. .+++. +..+..+...+..++.+..+.-..         ...-.|+|.++|++.++ ++-+. .++
T Consensus       170 ~~d~S~l~~~p~t~~lliL-S~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNl-fy~  246 (248)
T PF06977_consen  170 VRDLSGLSYDPRTGHLLIL-SDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNL-FYR  246 (248)
T ss_dssp             SS---EEEEETTTTEEEEE-ETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTE-EEE
T ss_pred             eccccceEEcCCCCeEEEE-ECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCce-EEE
Confidence            1122334444443 34443 556777777888887766654332         24678999999975554 45554 555


Q ss_pred             E
Q 014977          244 F  244 (415)
Q Consensus       244 w  244 (415)
                      |
T Consensus       247 f  247 (248)
T PF06977_consen  247 F  247 (248)
T ss_dssp             E
T ss_pred             e
Confidence            4

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.33  E-value=0.022  Score=42.35  Aligned_cols=93  Identities=13%  Similarity=0.153  Sum_probs=65.9

Q ss_pred             EEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCcce
Q 014977          100 LALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGL  177 (415)
Q Consensus       100 ~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~  177 (415)
                      ..|+.|++|     ..|++|+  ..+.+.++.....|..+.-...+++..  .+|+|-+|+-  .+.+..++....+...
T Consensus        16 ~eLlvGs~D-----~~IRvf~--~~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~--~~RlWRiKSK~~~~~~   86 (111)
T PF14783_consen   16 NELLVGSDD-----FEIRVFK--GDEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDR--SQRLWRIKSKNQVTSM   86 (111)
T ss_pred             ceEEEecCC-----cEEEEEe--CCcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeC--cceeeeeccCCCeEEE
Confidence            456666666     9999998  558888999889999999888877666  7999999984  3455556555555555


Q ss_pred             EEEecCCCceEEEEeCCccCeEEE
Q 014977          178 CCLSHHSSTSVLACPGLQRGQVRI  201 (415)
Q Consensus       178 ~~~~~~~~~~~l~~~g~~dg~v~i  201 (415)
                      ..+..+.++..-+.+|-.+|.|-+
T Consensus        87 ~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   87 AFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             EEEcCCCCCceEEEEEecCCeEEe
Confidence            556666655443344777777643

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.32  E-value=0.00066  Score=66.66  Aligned_cols=108  Identities=19%  Similarity=0.186  Sum_probs=80.2

Q ss_pred             ecCCCceEEEEeC---CccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEec
Q 014977          181 SHHSSTSVLACPG---LQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR  257 (415)
Q Consensus       181 ~~~~~~~~l~~~g---~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~  257 (415)
                      +|+|...+++++.   ...|.|.|+..++++.+... ..-.+++++|+|..-.|+.|-.-|. +.+|...+.+.-.....
T Consensus        22 SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~-~~v~~~~~~e~htv~~t   99 (1416)
T KOG3617|consen   22 SWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGV-SDVQKTNTTETHTVVET   99 (1416)
T ss_pred             ccCCCCceeEEEEecCCCCceEEEEecCCCCCcccc-cceehhhhccChHHHHHhhccccce-eEEEecCCceeeeeccC
Confidence            4444455555422   35678888877776543322 1223467999999988999999998 99999766554433333


Q ss_pred             CCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEcee
Q 014977          258 GVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV  292 (415)
Q Consensus       258 ~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~  292 (415)
                        |..+|..+.||++|..|+++..-|.|.+|...-
T Consensus       100 --h~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen  100 --HPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             --CCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence              889999999999999999999999999999874

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.32  E-value=0.08  Score=44.73  Aligned_cols=200  Identities=14%  Similarity=0.163  Sum_probs=113.5

Q ss_pred             CCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeee----CCeEEEEecCCCCCCCCCeEEEEEC--CCCCEEE
Q 014977           56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFR----CNILALVGAGDNSQYPPTKVIIWDD--HQSRCIG  128 (415)
Q Consensus        56 g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~s~~~d~~~~~~~i~vwd~--~~~~~~~  128 (415)
                      +.++.+-- .+.|.-||.+.. ...+..+....  ...+.+.    ++ .+.+.++..     -.|.-||-  +.....+
T Consensus        27 ~sLl~VDi~ag~v~r~D~~qn-~v~ra~ie~p~--~ag~ilpv~~~~q-~~~v~~G~k-----f~i~nwd~~~~~a~v~~   97 (310)
T KOG4499|consen   27 QSLLYVDIEAGEVHRYDIEQN-KVYRAKIEGPP--SAGFILPVEGGPQ-EFAVGCGSK-----FVIVNWDGVSESAKVYR   97 (310)
T ss_pred             ceEEEEEeccCceehhhhhhh-heEEEEEecCc--ceeEEEEecCCCc-eEEEeecce-----EEEEEcccccceeeeee
Confidence            34555544 777777998763 33444442222  2222222    22 334444432     45666773  2233333


Q ss_pred             EE---E---ccCceeEEEEcCCeEEEE------------eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEE
Q 014977          129 EF---A---FRSDVRSVKLSRDRIVVV------------LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLA  190 (415)
Q Consensus       129 ~~---~---~~~~i~~l~~~~~~~~~~------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  190 (415)
                      ++   +   .....++-..+|+|++.+            ..+.++.|-..  ..+..+...-.  -...++|+.+.+.+.
T Consensus        98 t~~ev~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~--IsNgl~Wd~d~K~fY  173 (310)
T KOG4499|consen   98 TLFEVQPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVG--ISNGLAWDSDAKKFY  173 (310)
T ss_pred             eccccCchHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhcc--CCccccccccCcEEE
Confidence            32   1   245667778899999876            13556666532  11212211111  234567777777777


Q ss_pred             EeCCccCeEEEEEcCC--------cceEEEecC---cc-ceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecC
Q 014977          191 CPGLQRGQVRIEHFGL--------NMIKLINAH---DS-HIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRG  258 (415)
Q Consensus       191 ~~g~~dg~v~i~~~~~--------~~~~~~~~~---~~-~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~  258 (415)
                      +.-+.+-+|.-|+.+.        +.+..++..   .. ..-.+++..+|.+.++.-..++ |...|..+|+.+.+++- 
T Consensus       174 ~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~-V~~~dp~tGK~L~eikl-  251 (310)
T KOG4499|consen  174 YIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGT-VQKVDPTTGKILLEIKL-  251 (310)
T ss_pred             EEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcE-EEEECCCCCcEEEEEEc-
Confidence            7777777777776432        222222221   11 1234555668887777777777 99999999999999987 


Q ss_pred             CCcccEEEEEeCC
Q 014977          259 VDRAEIYSIALSP  271 (415)
Q Consensus       259 ~~~~~v~~l~~sp  271 (415)
                       ....|++++|--
T Consensus       252 -Pt~qitsccFgG  263 (310)
T KOG4499|consen  252 -PTPQITSCCFGG  263 (310)
T ss_pred             -CCCceEEEEecC
Confidence             456899999964

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.31  E-value=0.024  Score=53.32  Aligned_cols=136  Identities=15%  Similarity=0.296  Sum_probs=89.6

Q ss_pred             CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEE----eCCccCeEEEEEcCCcc---eEEEecC----ccce
Q 014977          151 EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC----PGLQRGQVRIEHFGLNM---IKLINAH----DSHI  219 (415)
Q Consensus       151 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~g~~dg~v~i~~~~~~~---~~~~~~~----~~~i  219 (415)
                      ...++-.|++.|+.+..+..+.. +..+.+.++.++..|..    .|-.+..|.-|+.+.+-   +...+.|    ....
T Consensus       355 ~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nF  433 (644)
T KOG2395|consen  355 QDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNF  433 (644)
T ss_pred             cCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccccccccc
Confidence            35688888999999988877665 56666666554433311    13345555555554322   2222333    2345


Q ss_pred             EEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEE-EEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceec
Q 014977          220 ACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQ-EVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR  293 (415)
Q Consensus       220 ~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~-~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~  293 (415)
                      .|.+-..+| ++++|+.+|. |++||- .+...+ .+++  ...+|..+..+.||++|+..+ +..+.+.++.-.
T Consensus       434 sc~aTT~sG-~IvvgS~~Gd-IRLYdr-i~~~AKTAlPg--LG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~~k  502 (644)
T KOG2395|consen  434 SCFATTESG-YIVVGSLKGD-IRLYDR-IGRRAKTALPG--LGDAIKHVDVTADGKWILATC-KTYLLLIDTLIK  502 (644)
T ss_pred             ceeeecCCc-eEEEeecCCc-EEeehh-hhhhhhhcccc--cCCceeeEEeeccCcEEEEec-ccEEEEEEEecc
Confidence            666666666 7999999999 999996 554433 3444  667899999999999987554 667888887653

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.29  E-value=0.22  Score=49.15  Aligned_cols=234  Identities=10%  Similarity=0.022  Sum_probs=126.1

Q ss_pred             EEEEEe-CCcEEEEEccCCceeEEEeccCCCe--eEEE-EeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEc-
Q 014977           58 CFAAGT-SCGFRIYNCEPFKETFRRDLKSGGF--RIVE-MLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAF-  132 (415)
Q Consensus        58 ~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~-  132 (415)
                      .++.++ ++.+.-.|.++++.+....+.....  .+.+ .... ++.+++.......-.++.|..+|.++|+.+..+.. 
T Consensus       122 ~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~-~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~  200 (527)
T TIGR03075       122 KVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV-KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTV  200 (527)
T ss_pred             EEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEE-CCEEEEeecccccCCCcEEEEEECCCCceeEeccCc
Confidence            455566 8888888988888776654321111  1111 1111 34444433210000238999999999999887652 


Q ss_pred             -cC------------------------------ce-eEEEEcCCeEEEE--e-----------------CCeEEEEEcCC
Q 014977          133 -RS------------------------------DV-RSVKLSRDRIVVV--L-----------------EHKIYVYSFVD  161 (415)
Q Consensus       133 -~~------------------------------~i-~~l~~~~~~~~~~--~-----------------d~~i~iwd~~~  161 (415)
                       ..                              .+ ..+.+.+...++.  .                 ...|.-.|+++
T Consensus       201 p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~T  280 (527)
T TIGR03075       201 PGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDT  280 (527)
T ss_pred             CCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcccc
Confidence             11                              00 1234555433333  1                 12677888999


Q ss_pred             ceeeeEEeccCCCc---------ceEEEecCCCceEEEEeCCccCeEEEEEc-CCcceEE--------Ee---c-Cc-cc
Q 014977          162 LKLLHQIETLANLR---------GLCCLSHHSSTSVLACPGLQRGQVRIEHF-GLNMIKL--------IN---A-HD-SH  218 (415)
Q Consensus       162 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~g~~dg~v~i~~~-~~~~~~~--------~~---~-~~-~~  218 (415)
                      |+..-.++...+..         ..+.+..+....-++..+..+|.+++.+. +++.+..        ..   . .. .+
T Consensus       281 G~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p  360 (527)
T TIGR03075       281 GKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRP  360 (527)
T ss_pred             CCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCC
Confidence            99887776533322         12222223322234445778999988544 4544311        10   0 00 00


Q ss_pred             e----------------------------EEEEeCCCCCEEEEEeCC---------------------------------
Q 014977          219 I----------------------------ACFTLTLDGLLLATASTR---------------------------------  237 (415)
Q Consensus       219 i----------------------------~~l~~sp~g~~l~s~s~d---------------------------------  237 (415)
                      +                            ..++++|+..+++....+                                 
T Consensus       361 ~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~  440 (527)
T TIGR03075       361 IEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHM  440 (527)
T ss_pred             ccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCc
Confidence            0                            125666665555443322                                 


Q ss_pred             CcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977          238 GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       238 g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                      |. |.-+|+.+|+.+........  ...+. ..-.+.+++.++.+|.++.+|.++|+..
T Consensus       441 g~-l~AiD~~tGk~~W~~~~~~p--~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~l  495 (527)
T TIGR03075       441 GS-LIAWDPITGKIVWEHKEDFP--LWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEEL  495 (527)
T ss_pred             ee-EEEEeCCCCceeeEecCCCC--CCCcc-eEECCcEEEEECCCCeEEEEECCCCCEe
Confidence            44 77788888888776653211  11111 1124556777888999999999999853

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.25  E-value=0.29  Score=49.84  Aligned_cols=228  Identities=14%  Similarity=0.198  Sum_probs=138.7

Q ss_pred             CEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCC---------CCCCCCeEEEEECCCCCEE
Q 014977           57 GCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDN---------SQYPPTKVIIWDDHQSRCI  127 (415)
Q Consensus        57 ~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d---------~~~~~~~i~vwd~~~~~~~  127 (415)
                      ..|+.+..+.+++..++..+++..+++ .-......+++.+....+...+..         +.+.-..++++|-++-+.+
T Consensus       685 d~l~~~~~~~l~i~tid~iqkl~irtv-pl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl  763 (1096)
T KOG1897|consen  685 DSLASANGGALTIGTIDEIQKLHIRTV-PLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVL  763 (1096)
T ss_pred             ceEEEecCCceEEEEecchhhcceeee-cCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEE
Confidence            466777788888888887666555444 333344556666533333322211         1112246788887777666


Q ss_pred             EEEEc-----cCceeEEEEcCC-eEEEE-------------eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceE
Q 014977          128 GEFAF-----RSDVRSVKLSRD-RIVVV-------------LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSV  188 (415)
Q Consensus       128 ~~~~~-----~~~i~~l~~~~~-~~~~~-------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (415)
                      ...++     ...|.+..|..| +.+++             ..|.|.+|.+..++.+.....+.-...+.++..- ++++
T Consensus       764 ~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkl  842 (1096)
T KOG1897|consen  764 SSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKL  842 (1096)
T ss_pred             eeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeE
Confidence            65552     223445557665 44333             2588999988775544444333222234444433 4567


Q ss_pred             EEEeCCccCeEEEEEcCCc-ceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCC--CcEEEEEecCCCcccEE
Q 014977          189 LACPGLQRGQVRIEHFGLN-MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVD--GTRLQEVRRGVDRAEIY  265 (415)
Q Consensus       189 l~~~g~~dg~v~i~~~~~~-~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~--~~~~~~~~~~~~~~~v~  265 (415)
                      +|.   -+..|+++.+..+ .++.-..+..++..+.+.-.|..+++|.--+. +.+.-.+.  |... .+...-+....+
T Consensus       843 lA~---In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~S-itll~y~~~eg~f~-evArD~~p~Wmt  917 (1096)
T KOG1897|consen  843 LAG---INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRS-ITLLQYKGDEGNFE-EVARDYNPNWMT  917 (1096)
T ss_pred             EEe---cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccce-EEEEEEeccCCceE-EeehhhCcccee
Confidence            754   4568999777765 55555678889999999999999999998887 77655443  3343 333333566778


Q ss_pred             EEEeCCCCCEEEEEeCCCeEEEEEcee
Q 014977          266 SIALSPNVQWLAVASDKGTVHIFSLRV  292 (415)
Q Consensus       266 ~l~~spdg~~l~s~s~dg~i~vwd~~~  292 (415)
                      ++.+-.+ ..++.+..+|.+++-..++
T Consensus       918 aveil~~-d~ylgae~~gNlf~v~~d~  943 (1096)
T KOG1897|consen  918 AVEILDD-DTYLGAENSGNLFTVRKDS  943 (1096)
T ss_pred             eEEEecC-ceEEeecccccEEEEEecC
Confidence            8887555 4455667788888876664

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.22  E-value=0.2  Score=47.26  Aligned_cols=234  Identities=16%  Similarity=0.100  Sum_probs=112.7

Q ss_pred             ceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEEC---
Q 014977           46 ELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD---  121 (415)
Q Consensus        46 ~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~---  121 (415)
                      .|+.++|+++..-|++|. .|.|.||.+...+..-...    ......+.+.+    +-.....    ..-+.|-+.   
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~----~~~~~~~~~~~----~~~~~~~----~~l~di~~r~~~   70 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNRE----QPPDLDYNFRR----FSLNNSP----GKLTDISDRAPP   70 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE----------------------S------GGGSS-----SEEE-GGG--T
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccC----CCcccCccccc----ccccCCC----cceEEehhhCCc
Confidence            589999999999999999 9999999987533211000    00011111100    0000000    011111111   


Q ss_pred             --CCC-CEEEEEE-ccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccC------CC--cceEEEe---cCC
Q 014977          122 --HQS-RCIGEFA-FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLA------NL--RGLCCLS---HHS  184 (415)
Q Consensus       122 --~~~-~~~~~~~-~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~------~~--~~~~~~~---~~~  184 (415)
                        +.| .+...+. ..++|++++.+.-|...+  .+|.+.|.|++....+..-....      ..  +..+.|.   ...
T Consensus        71 ~~~~gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~  150 (395)
T PF08596_consen   71 SLKEGFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGG  150 (395)
T ss_dssp             T-SEEEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TT
T ss_pred             ccccccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCC
Confidence              111 1222222 478999999998887777  68999999998887776532222      11  1122222   222


Q ss_pred             C--ceEEEEeCCccCeEEEEEcC----Ccc----eEEEecCccceEEEE-eCCC-----------------C----CEEE
Q 014977          185 S--TSVLACPGLQRGQVRIEHFG----LNM----IKLINAHDSHIACFT-LTLD-----------------G----LLLA  232 (415)
Q Consensus       185 ~--~~~l~~~g~~dg~v~i~~~~----~~~----~~~~~~~~~~i~~l~-~sp~-----------------g----~~l~  232 (415)
                      +  ...++.+|...|.+.++...    +.-    ......+.++|..|. ++.+                 |    .+++
T Consensus       151 D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vV  230 (395)
T PF08596_consen  151 DGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVV  230 (395)
T ss_dssp             SSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEE
T ss_pred             CcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEE
Confidence            2  23444457788988885432    111    111224556665554 3211                 1    1444


Q ss_pred             EEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEe-----CCCCCEEEEEeCCCeEEEEEceeccc
Q 014977          233 TASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIAL-----SPNVQWLAVASDKGTVHIFSLRVRVV  295 (415)
Q Consensus       233 s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~-----spdg~~l~s~s~dg~i~vwd~~~~~~  295 (415)
                      +++ +.. ++++...+.+..++...  ..-....+.+     ...+..|++-..+|.|++|.+..-+.
T Consensus       231 vvS-e~~-irv~~~~~~k~~~K~~~--~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lke  294 (395)
T PF08596_consen  231 VVS-ESD-IRVFKPPKSKGAHKSFD--DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKE  294 (395)
T ss_dssp             EE--SSE-EEEE-TT---EEEEE-S--S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--E
T ss_pred             EEc-ccc-eEEEeCCCCcccceeec--cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchH
Confidence            444 455 99999988877655543  3223334444     23567888999999999999877653

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.18  E-value=0.23  Score=47.46  Aligned_cols=199  Identities=10%  Similarity=0.064  Sum_probs=101.9

Q ss_pred             eEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE--------e------CCeE
Q 014977           89 RIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--------L------EHKI  154 (415)
Q Consensus        89 ~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--------~------d~~i  154 (415)
                      .+..+.++|++..++-+-+...-....|+++|+++|+.+...-.......+.|.+++..++        .      ...|
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v  204 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV  204 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence            3346778888866553211100012579999999997765432222223499999977665        1      3358


Q ss_pred             EEEEcCCceee--eEEeccCCCcceEEEecCCCceEEEEeCC--cc-CeEEEEEcCC-----cceEEEecCccceE-EEE
Q 014977          155 YVYSFVDLKLL--HQIETLANLRGLCCLSHHSSTSVLACPGL--QR-GQVRIEHFGL-----NMIKLINAHDSHIA-CFT  223 (415)
Q Consensus       155 ~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~g~--~d-g~v~i~~~~~-----~~~~~~~~~~~~i~-~l~  223 (415)
                      +.|.+.+...-  ..+.........+.+..+.++++++....  .+ ..+.+-+...     .....+......+. .+.
T Consensus       205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~  284 (414)
T PF02897_consen  205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD  284 (414)
T ss_dssp             EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred             EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence            88898765432  34444444433566666777777654322  22 3455533333     24444544444443 343


Q ss_pred             eCCCCCEEEEEeC---CCcEEEEEECCCCcE---EEEEecCCCcccEEEEEeCCCCCEEE-EEeCCC--eEEEEEce
Q 014977          224 LTLDGLLLATAST---RGTLIRIFNTVDGTR---LQEVRRGVDRAEIYSIALSPNVQWLA-VASDKG--TVHIFSLR  291 (415)
Q Consensus       224 ~sp~g~~l~s~s~---dg~~I~vwd~~~~~~---~~~~~~~~~~~~v~~l~~spdg~~l~-s~s~dg--~i~vwd~~  291 (415)
                      .. .+.+++....   ++. |.-.++.....   ...+..+.....+..+..  .+.+|+ ..-.++  .|+++++.
T Consensus       285 ~~-~~~~yi~Tn~~a~~~~-l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~  357 (414)
T PF02897_consen  285 HH-GDRLYILTNDDAPNGR-LVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLD  357 (414)
T ss_dssp             EE-TTEEEEEE-TT-TT-E-EEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT
T ss_pred             cc-CCEEEEeeCCCCCCcE-EEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECC
Confidence            33 4444444332   345 66677776652   224443212224555554  344444 444454  58888888

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.12  E-value=0.0024  Score=64.52  Aligned_cols=104  Identities=13%  Similarity=0.196  Sum_probs=72.4

Q ss_pred             eEEEEeCCccCeEEEEEcCCc--ceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCc-cc
Q 014977          187 SVLACPGLQRGQVRIEHFGLN--MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDR-AE  263 (415)
Q Consensus       187 ~~l~~~g~~dg~v~i~~~~~~--~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~-~~  263 (415)
                      ..+++ |+..|.+...+.++.  +...-..-.++|++++|+.+|++++.|-.+|. |.+||+..++.++.+..+.++ ..
T Consensus       100 ~~ivi-~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~-V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen  100 VPIVI-GTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGH-VTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eeEEE-EcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCc-EEEEEccCCcceeeeeecCCccce
Confidence            34555 667777877555443  22222334679999999999999999999999 999999999998888763222 13


Q ss_pred             EEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977          264 IYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (415)
Q Consensus       264 v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  294 (415)
                      |..+.+..++..+.++...|.  +|++.-.+
T Consensus       178 vi~v~~t~~nS~llt~D~~Gs--f~~lv~nk  206 (1206)
T KOG2079|consen  178 VIFVGRTSQNSKLLTSDTGGS--FWKLVFNK  206 (1206)
T ss_pred             EEEEEEeCCCcEEEEccCCCc--eEEEEech
Confidence            334445556667778777774  78776544

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.09  E-value=0.069  Score=53.09  Aligned_cols=106  Identities=13%  Similarity=0.035  Sum_probs=60.3

Q ss_pred             EEecCCCceEEEEeCC-----ccCeEEEE--EcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEE-------
Q 014977          179 CLSHHSSTSVLACPGL-----QRGQVRIE--HFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIF-------  244 (415)
Q Consensus       179 ~~~~~~~~~~l~~~g~-----~dg~v~i~--~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vw-------  244 (415)
                      ....++++..+++...     .|..-.||  ...+.. ..+..- .....-.|+|+|..|++.......+++.       
T Consensus       354 spaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt~g-~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gq  431 (591)
T PRK13616        354 SAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVLEG-HSLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQ  431 (591)
T ss_pred             cceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeeecC-CCCCCceECCCCCceEEEecCcceEEEeccCCCce
Confidence            3444556666666541     23333444  333333 333222 2378889999998887775432213333       


Q ss_pred             ----ECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEcee
Q 014977          245 ----NTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV  292 (415)
Q Consensus       245 ----d~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~  292 (415)
                          ++..++...   .  ....|..+.|||||..|+... +|.|++=-+..
T Consensus       432 l~~~~vd~ge~~~---~--~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr  477 (591)
T PRK13616        432 LARTPVDASAVAS---R--VPGPISELQLSRDGVRAAMII-GGKVYLAVVEQ  477 (591)
T ss_pred             EEEEeccCchhhh---c--cCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEe
Confidence                333332221   1  245799999999999998766 57787744444

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.06  E-value=0.37  Score=47.49  Aligned_cols=186  Identities=15%  Similarity=0.094  Sum_probs=103.2

Q ss_pred             CEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEE----------EEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCC
Q 014977           57 GCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIV----------EMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR  125 (415)
Q Consensus        57 ~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~  125 (415)
                      ..+.+++ ++.|.-.|..+++.+.+...... ..+.          .+.... +.+++. ..+     +.|.-.|.++|+
T Consensus        70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~-~~~~~~~~~~~~~rg~av~~-~~v~v~-t~d-----g~l~ALDa~TGk  141 (527)
T TIGR03075        70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLP-DDVIPVMCCDVVNRGVALYD-GKVFFG-TLD-----ARLVALDAKTGK  141 (527)
T ss_pred             CEEEEECCCCcEEEEECCCCceeeEecCCCC-cccccccccccccccceEEC-CEEEEE-cCC-----CEEEEEECCCCC
Confidence            3455555 78888888888777776544211 1110          112222 333333 333     899999999999


Q ss_pred             EEEEEEccC-----ceeE-EEEcCCeEEEE-e-------CCeEEEEEcCCceeeeEEeccCCCc----------------
Q 014977          126 CIGEFAFRS-----DVRS-VKLSRDRIVVV-L-------EHKIYVYSFVDLKLLHQIETLANLR----------------  175 (415)
Q Consensus       126 ~~~~~~~~~-----~i~~-l~~~~~~~~~~-~-------d~~i~iwd~~~~~~~~~~~~~~~~~----------------  175 (415)
                      .+.......     .+.+ -.+. ++.+++ .       ++.|+.+|.++|+.+-.+..-....                
T Consensus       142 ~~W~~~~~~~~~~~~~tssP~v~-~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~  220 (527)
T TIGR03075       142 VVWSKKNGDYKAGYTITAAPLVV-KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGA  220 (527)
T ss_pred             EEeecccccccccccccCCcEEE-CCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccccccccccccccc
Confidence            988876211     1211 1122 444444 1       5889999999999887664321110                


Q ss_pred             --------------ceEEEecCCCceEEEEeCCc----------------cCeEEEEEcCCcceEEEecCccce------
Q 014977          176 --------------GLCCLSHHSSTSVLACPGLQ----------------RGQVRIEHFGLNMIKLINAHDSHI------  219 (415)
Q Consensus       176 --------------~~~~~~~~~~~~~l~~~g~~----------------dg~v~i~~~~~~~~~~~~~~~~~i------  219 (415)
                                    .-..++.+++..++....+.                +..|.|+..+++..-.++.....+      
T Consensus       221 ~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~  300 (527)
T TIGR03075       221 KTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGV  300 (527)
T ss_pred             CCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCC
Confidence                          00122445444444332111                123444555566655554322111      


Q ss_pred             ---EEEEeCCCCC---EEEEEeCCCcEEEEEECCCCcEE
Q 014977          220 ---ACFTLTLDGL---LLATASTRGTLIRIFNTVDGTRL  252 (415)
Q Consensus       220 ---~~l~~sp~g~---~l~s~s~dg~~I~vwd~~~~~~~  252 (415)
                         .-+.+..+|+   .++.+..+|. +++.|-.+|+.+
T Consensus       301 ~~p~l~d~~~~G~~~~~v~~~~K~G~-~~vlDr~tG~~i  338 (527)
T TIGR03075       301 NEMILFDLKKDGKPRKLLAHADRNGF-FYVLDRTNGKLL  338 (527)
T ss_pred             CCcEEEEeccCCcEEEEEEEeCCCce-EEEEECCCCcee
Confidence               1223334676   7889999999 999999999986

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.03  E-value=0.012  Score=55.21  Aligned_cols=138  Identities=17%  Similarity=0.268  Sum_probs=94.7

Q ss_pred             EEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeE---------EEE-eCCeEEEEEcCCc-e-eeeE
Q 014977          100 LALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRI---------VVV-LEHKIYVYSFVDL-K-LLHQ  167 (415)
Q Consensus       100 ~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~---------~~~-~d~~i~iwd~~~~-~-~~~~  167 (415)
                      .++.+++..     ..|+-.|++.|+.+.+......|.-+.+.|+..         ++. .++.|.-||.+-. + .+..
T Consensus       347 lil~~~~~~-----~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~  421 (644)
T KOG2395|consen  347 LILMDGGEQ-----DKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV  421 (644)
T ss_pred             eEeeCCCCc-----CcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence            445555544     788999999999999999766688888887643         333 7889999998532 2 2222


Q ss_pred             EeccC--CCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcce-EEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEE
Q 014977          168 IETLA--NLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMI-KLINAHDSHIACFTLTLDGLLLATASTRGTLIRIF  244 (415)
Q Consensus       168 ~~~~~--~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~-~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vw  244 (415)
                      .+.+.  ......|++...+| +|++ |+.+|.|++++..+... ..+.+-..+|..|..+.+|++|+..+. .. +.+-
T Consensus       422 ~q~kqy~~k~nFsc~aTT~sG-~Ivv-gS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~-ty-LlLi  497 (644)
T KOG2395|consen  422 VQSKQYSTKNNFSCFATTESG-YIVV-GSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCK-TY-LLLI  497 (644)
T ss_pred             eeccccccccccceeeecCCc-eEEE-eecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecc-cE-EEEE
Confidence            22221  12245666766666 4444 78999999988765443 446778899999999999998776553 34 6666


Q ss_pred             EC
Q 014977          245 NT  246 (415)
Q Consensus       245 d~  246 (415)
                      ++
T Consensus       498 ~t  499 (644)
T KOG2395|consen  498 DT  499 (644)
T ss_pred             EE
Confidence            54

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.01  E-value=0.32  Score=45.93  Aligned_cols=217  Identities=12%  Similarity=0.050  Sum_probs=131.8

Q ss_pred             ceEEEEEeCCCCEEEEEe--CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeE-EEEecC--CCCCCCCCeEEEEE
Q 014977           46 ELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNIL-ALVGAG--DNSQYPPTKVIIWD  120 (415)
Q Consensus        46 ~V~~l~~sp~g~~la~g~--d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~--~d~~~~~~~i~vwd  120 (415)
                      .-..+++++.+..+.+..  ++.|.+.|..+......... +.  ....+.+++++. +.++..  .+     +.+.+.|
T Consensus        75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v-G~--~P~~~~~~~~~~~vYV~n~~~~~-----~~vsvid  146 (381)
T COG3391          75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV-GL--GPVGLAVDPDGKYVYVANAGNGN-----NTVSVID  146 (381)
T ss_pred             cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee-cc--CCceEEECCCCCEEEEEecccCC-----ceEEEEe
Confidence            345778888888655544  78999999776554433322 22  455667777663 333332  24     8999999


Q ss_pred             CCCCCEEEEEEccCceeEEEEcCCeEEEE----eCCeEEEEEcCCceeee-E----EeccCCCcceEEEecCCCceEEEE
Q 014977          121 DHQSRCIGEFAFRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLH-Q----IETLANLRGLCCLSHHSSTSVLAC  191 (415)
Q Consensus       121 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~l~~  191 (415)
                      ..+++.+....-...-..++++|++..+.    .++.|.+.|........ .    +..... .....+.++....+++.
T Consensus       147 ~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~-P~~i~v~~~g~~~yV~~  225 (381)
T COG3391         147 AATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTG-PAGIAVDPDGNRVYVAN  225 (381)
T ss_pred             CCCCeEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCC-CceEEECCCCCEEEEEe
Confidence            99999888855332238999999998665    48899999976655442 1    111111 13344555544444443


Q ss_pred             eCCccCeEEEEEcCCcceEEE--ecCccceEEEEeCCCCCEEEEEeCC-CcEEEEEECCCCcEEEEEecCCCc-ccEEEE
Q 014977          192 PGLQRGQVRIEHFGLNMIKLI--NAHDSHIACFTLTLDGLLLATASTR-GTLIRIFNTVDGTRLQEVRRGVDR-AEIYSI  267 (415)
Q Consensus       192 ~g~~dg~v~i~~~~~~~~~~~--~~~~~~i~~l~~sp~g~~l~s~s~d-g~~I~vwd~~~~~~~~~~~~~~~~-~~v~~l  267 (415)
                      .++.++.+..-+.....+...  .........+.++|+|+.+.+.... +. +.+.|..+......+..+... ..+..+
T Consensus       226 ~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~-V~vid~~~~~v~~~~~~~~~~~~~~~~~  304 (381)
T COG3391         226 DGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGT-VSVIDGATDRVVKTGPTGNEALGEPVSI  304 (381)
T ss_pred             ccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCe-EEEEeCCCCceeeeecccccccccceec
Confidence            332235666644444333332  1111145678899999998887555 56 999999888877766543221 235555


Q ss_pred             EeCCC
Q 014977          268 ALSPN  272 (415)
Q Consensus       268 ~~spd  272 (415)
                      ++.+.
T Consensus       305 ~~~~~  309 (381)
T COG3391         305 AISPL  309 (381)
T ss_pred             cceee
Confidence            55543

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.98  E-value=0.22  Score=43.53  Aligned_cols=185  Identities=12%  Similarity=0.088  Sum_probs=110.6

Q ss_pred             CCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCc--eeEEEEcCCeEEEE--eCCeEEEEEcC
Q 014977           85 SGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSD--VRSVKLSRDRIVVV--LEHKIYVYSFV  160 (415)
Q Consensus        85 ~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~--i~~l~~~~~~~~~~--~d~~i~iwd~~  160 (415)
                      ....-.-.+.|..++.++-+.+..   ....|+.+|+.+++..........  -..++...|..+.+  .++...+||..
T Consensus        42 d~~aFTQGL~~~~~g~LyESTG~y---G~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~  118 (264)
T PF05096_consen   42 DPTAFTQGLEFLDDGTLYESTGLY---GQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPN  118 (264)
T ss_dssp             -TT-EEEEEEEEETTEEEEEECST---TEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETT
T ss_pred             CCcccCccEEecCCCEEEEeCCCC---CcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccc
Confidence            444445567776667777666653   335899999999998888774333  34566667766666  79999999999


Q ss_pred             CceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEc-CCcceEEEecC--cc---ceEEEEeCCCCCEEEEE
Q 014977          161 DLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHF-GLNMIKLINAH--DS---HIACFTLTLDGLLLATA  234 (415)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~-~~~~~~~~~~~--~~---~i~~l~~sp~g~~l~s~  234 (415)
                      +.+.+.++.-...   -..++.+.+  .|+.+-+ ...++..+. +.+..+.+...  ..   .++-+.+- +|.+.|=.
T Consensus       119 tl~~~~~~~y~~E---GWGLt~dg~--~Li~SDG-S~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANV  191 (264)
T PF05096_consen  119 TLKKIGTFPYPGE---GWGLTSDGK--RLIMSDG-SSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANV  191 (264)
T ss_dssp             TTEEEEEEE-SSS-----EEEECSS--CEEEE-S-SSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEE
T ss_pred             cceEEEEEecCCc---ceEEEcCCC--EEEEECC-ccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEe
Confidence            9999988865432   233444433  3444322 345555443 33444444332  22   34556664 67666655


Q ss_pred             eCCCcEEEEEECCCCcEEEEEecC----------C---CcccEEEEEeCCCCCEEEEEe
Q 014977          235 STRGTLIRIFNTVDGTRLQEVRRG----------V---DRAEIYSIALSPNVQWLAVAS  280 (415)
Q Consensus       235 s~dg~~I~vwd~~~~~~~~~~~~~----------~---~~~~v~~l~~spdg~~l~s~s  280 (415)
                      -.... |...|..+|+....+.-.          .   ...-.+.|++.|....|...+
T Consensus       192 W~td~-I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  192 WQTDR-IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             TTSSE-EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             CCCCe-EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            55666 888999999988766320          0   124689999998766555444

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.96  E-value=0.26  Score=44.11  Aligned_cols=217  Identities=17%  Similarity=0.178  Sum_probs=113.4

Q ss_pred             CCCCEEEEEeCCcEEEEEcc-CCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEE----
Q 014977           54 QDYGCFAAGTSCGFRIYNCE-PFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIG----  128 (415)
Q Consensus        54 p~g~~la~g~d~~v~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~----  128 (415)
                      ..++.|+.|+++++.+++.. ..+...  .  .....+..+...++...++.-.+      +.+.++++..-....    
T Consensus         5 ~~~~~L~vGt~~Gl~~~~~~~~~~~~~--i--~~~~~I~ql~vl~~~~~llvLsd------~~l~~~~L~~l~~~~~~~~   74 (275)
T PF00780_consen    5 SWGDRLLVGTEDGLYVYDLSDPSKPTR--I--LKLSSITQLSVLPELNLLLVLSD------GQLYVYDLDSLEPVSTSAP   74 (275)
T ss_pred             cCCCEEEEEECCCEEEEEecCCcccee--E--eecceEEEEEEecccCEEEEEcC------CccEEEEchhhcccccccc
Confidence            35788999995559999983 222211  1  12223777777775444443332      899999976543333    


Q ss_pred             -----------EEEccCceeEEE---EcCCeEEEE--eCCeEEEEEcCCc-----eeeeEEeccCCCcceEEEecCCCce
Q 014977          129 -----------EFAFRSDVRSVK---LSRDRIVVV--LEHKIYVYSFVDL-----KLLHQIETLANLRGLCCLSHHSSTS  187 (415)
Q Consensus       129 -----------~~~~~~~i~~l~---~~~~~~~~~--~d~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  187 (415)
                                 .+.....+...+   -......++  ...+|.+|.....     +..+.+....   .+..+.+.++  
T Consensus        75 ~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~---~~~~i~~~~~--  149 (275)
T PF00780_consen   75 LAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPD---PPSSIAFLGN--  149 (275)
T ss_pred             ccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCC---CcEEEEEeCC--
Confidence                       122233444444   122333333  6779999887542     4555555543   3444555433  


Q ss_pred             EEEEeCCccCeEEEEEcCCcceEEEecC------------ccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEE--
Q 014977          188 VLACPGLQRGQVRIEHFGLNMIKLINAH------------DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQ--  253 (415)
Q Consensus       188 ~l~~~g~~dg~v~i~~~~~~~~~~~~~~------------~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~--  253 (415)
                      .+++ |..++...++..++.....+...            ..++..+.. +++.+|++-.  .. -.+.|. .|+..+  
T Consensus       150 ~i~v-~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~~--~~-g~fv~~-~G~~~r~~  223 (275)
T PF00780_consen  150 KICV-GTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCYD--NI-GVFVNK-NGEPSRKS  223 (275)
T ss_pred             EEEE-EeCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEec--ce-EEEEcC-CCCcCccc
Confidence            3443 44555444444433332222111            123333443 3456665432  22 334443 554433  


Q ss_pred             EEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCC
Q 014977          254 EVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGE  297 (415)
Q Consensus       254 ~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~  297 (415)
                      .+..   ...+.++++.  ..+|++...+ .|.||++.+++..+
T Consensus       224 ~i~W---~~~p~~~~~~--~pyli~~~~~-~iEV~~~~~~~lvQ  261 (275)
T PF00780_consen  224 TIQW---SSAPQSVAYS--SPYLIAFSSN-SIEVRSLETGELVQ  261 (275)
T ss_pred             EEEc---CCchhEEEEE--CCEEEEECCC-EEEEEECcCCcEEE
Confidence            4443   2245566663  3577776654 49999999997643

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.72  E-value=0.49  Score=43.78  Aligned_cols=243  Identities=11%  Similarity=0.070  Sum_probs=107.1

Q ss_pred             EEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCC---C--------------CC
Q 014977           49 SVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGD---N--------------SQ  110 (415)
Q Consensus        49 ~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~---d--------------~~  110 (415)
                      ...++|+.+.++.-. ...++-.|+++.+......++..-.....+.-+.+...++....   +              .+
T Consensus        85 g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a  164 (386)
T PF14583_consen   85 GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEA  164 (386)
T ss_dssp             T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC
T ss_pred             ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhh
Confidence            456678888776554 66788888888766555444333333233333334443333211   1              00


Q ss_pred             CCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE-------eCC-eEEEEEcC-CceeeeEEeccCCCcceEEEe
Q 014977          111 YPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV-------LEH-KIYVYSFV-DLKLLHQIETLANLRGLCCLS  181 (415)
Q Consensus       111 ~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-------~d~-~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~  181 (415)
                      -....|.-.|+.+|+....+.....+..+.|+|....++       .+. .-+||-+. ++.....+..+.....+--=-
T Consensus       165 ~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEf  244 (386)
T PF14583_consen  165 RPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEF  244 (386)
T ss_dssp             ---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEE
T ss_pred             CCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCccccccc
Confidence            123577788899998877777888889999999655444       122 13555552 333333333332211222222


Q ss_pred             cCCCceEEEEeCC----ccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCC---------------cEEE
Q 014977          182 HHSSTSVLACPGL----QRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRG---------------TLIR  242 (415)
Q Consensus       182 ~~~~~~~l~~~g~----~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg---------------~~I~  242 (415)
                      |.++|..|.+.+.    .+..|.-.+........+. ...+...+-.++||++++-=+.|.               ..|+
T Consensus       245 w~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~-~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~  323 (386)
T PF14583_consen  245 WVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLM-EMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIY  323 (386)
T ss_dssp             E-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEE-EE-SEEEEEE-TTSSEEEEEE-------------------EEE
T ss_pred             ccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEE-eCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEE
Confidence            3455555554322    1222222333322222221 112333455678999876533332               1267


Q ss_pred             EEECCCCcEEEEEecC---------CCcccEEEEEeCCCCCEEEE-EeCCCeEEEEEceec
Q 014977          243 IFNTVDGTRLQEVRRG---------VDRAEIYSIALSPNVQWLAV-ASDKGTVHIFSLRVR  293 (415)
Q Consensus       243 vwd~~~~~~~~~~~~~---------~~~~~v~~l~~spdg~~l~s-~s~dg~i~vwd~~~~  293 (415)
                      +++++.++... +..+         .....=-...|+|||++++- +...|...||-++-.
T Consensus       324 ~~~~~~~~~~~-l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~i~  383 (386)
T PF14583_consen  324 LFDVEAGRFRK-LARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVEIP  383 (386)
T ss_dssp             EEETTTTEEEE-EEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE--
T ss_pred             EeccccCceee-eeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEeCc
Confidence            78887765432 2211         00111246789999998774 555777777765543

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.71  E-value=0.37  Score=42.16  Aligned_cols=184  Identities=13%  Similarity=0.080  Sum_probs=109.1

Q ss_pred             CCceEEEEEeCCCCEEEEEe---CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEE
Q 014977           44 EIELISVSWNQDYGCFAAGT---SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD  120 (415)
Q Consensus        44 ~~~V~~l~~sp~g~~la~g~---d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd  120 (415)
                      ..-...+.|..+|.++-+.+   ...|+.+|+++++......+ ....---.+....+..+..+--.      +...+||
T Consensus        44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l-~~~~FgEGit~~~d~l~qLTWk~------~~~f~yd  116 (264)
T PF05096_consen   44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPL-PPRYFGEGITILGDKLYQLTWKE------GTGFVYD  116 (264)
T ss_dssp             T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE--TTT--EEEEEEETTEEEEEESSS------SEEEEEE
T ss_pred             cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEEC-CccccceeEEEECCEEEEEEecC------CeEEEEc
Confidence            34466788877787777665   44689999999877666666 33333344555677777777554      9999999


Q ss_pred             CCCCCEEEEEEccCceeEEEEcCCeEEEEeC--CeEEEEEcCCceeeeEEeccCCC--c-ceEEEecCCCceEEEEeCCc
Q 014977          121 DHQSRCIGEFAFRSDVRSVKLSRDRIVVVLE--HKIYVYSFVDLKLLHQIETLANL--R-GLCCLSHHSSTSVLACPGLQ  195 (415)
Q Consensus       121 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~l~~~g~~  195 (415)
                      ..+-+.+.++.....=..++...+ .++..|  ..++.+|..+.+....+......  + ....+.+. +|.+.|-.=..
T Consensus       117 ~~tl~~~~~~~y~~EGWGLt~dg~-~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~t  194 (264)
T PF05096_consen  117 PNTLKKIGTFPYPGEGWGLTSDGK-RLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQT  194 (264)
T ss_dssp             TTTTEEEEEEE-SSS--EEEECSS-CEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTS
T ss_pred             cccceEEEEEecCCcceEEEcCCC-EEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCC
Confidence            999999999997777778884433 344444  57888998888777766543221  1 22333333 34444444445


Q ss_pred             cCeEEEEEcCCcceEEEec---------------CccceEEEEeCCCCCEEEEEeC
Q 014977          196 RGQVRIEHFGLNMIKLINA---------------HDSHIACFTLTLDGLLLATAST  236 (415)
Q Consensus       196 dg~v~i~~~~~~~~~~~~~---------------~~~~i~~l~~sp~g~~l~s~s~  236 (415)
                      |..++|+..++..+..+..               ...-.+.||++|....|...+.
T Consensus       195 d~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  195 DRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             SEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             CeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence            5556666666655544421               1245789999887765554443

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.69  E-value=0.0085  Score=37.17  Aligned_cols=34  Identities=15%  Similarity=0.371  Sum_probs=30.0

Q ss_pred             CcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977          260 DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (415)
Q Consensus       260 ~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  294 (415)
                      ....|..++|+|...+||.++.+|.|.+|++ +++
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q   43 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ   43 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence            3457999999999999999999999999999 444

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.67  E-value=0.21  Score=49.76  Aligned_cols=188  Identities=11%  Similarity=0.038  Sum_probs=96.8

Q ss_pred             CCceEEEEEeCCCCEEEEEe-------CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCC--CC----
Q 014977           44 EIELISVSWNQDYGCFAAGT-------SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDN--SQ----  110 (415)
Q Consensus        44 ~~~V~~l~~sp~g~~la~g~-------d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d--~~----  110 (415)
                      ...+.+.+++|+|+.+|...       |..-.||-....+..... + ... ......|++++..+....+.  ..    
T Consensus       349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~l-t-~g~-~~t~PsWspDG~~lw~v~dg~~~~~v~~  425 (591)
T PRK13616        349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQV-L-EGH-SLTRPSWSLDADAVWVVVDGNTVVRVIR  425 (591)
T ss_pred             ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceee-e-cCC-CCCCceECCCCCceEEEecCcceEEEec
Confidence            34688999999999887543       333455544332222221 2 222 36677888886544443221  00    


Q ss_pred             -CCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE--eCCeEEE---EEcCCcee-e---eEEeccCCCcceEEE
Q 014977          111 -YPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYV---YSFVDLKL-L---HQIETLANLRGLCCL  180 (415)
Q Consensus       111 -~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~d~~i~i---wd~~~~~~-~---~~~~~~~~~~~~~~~  180 (415)
                       -..+.+.+.++..+....  .....|..+.|+|||..++  .++.|++   -....|.. +   ..+..... .....+
T Consensus       426 ~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~-~~~~~l  502 (591)
T PRK13616        426 DPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLG-DTAVSL  502 (591)
T ss_pred             cCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccC-Cccccc
Confidence             011345444554444333  4466899999999999888  6788887   44344431 1   01111111 123556


Q ss_pred             ecCCCceEEEEeCCccCeEEEEEcCCcceEEEec--CccceEEEEeCCCCCEEEEEeCCCc
Q 014977          181 SHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINA--HDSHIACFTLTLDGLLLATASTRGT  239 (415)
Q Consensus       181 ~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~--~~~~i~~l~~sp~g~~l~s~s~dg~  239 (415)
                      .|.+++.+++.....+..+..-...+.....+..  ...++..|+-+++  .|+....++.
T Consensus       503 ~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~  561 (591)
T PRK13616        503 DWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAV  561 (591)
T ss_pred             eEecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCce
Confidence            6777776554432222333333344433332222  2455666666653  3444455553

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.60  E-value=0.17  Score=44.21  Aligned_cols=161  Identities=10%  Similarity=0.034  Sum_probs=100.4

Q ss_pred             CCCCEEEEEEccCceeEEEEcCCeEEEE-----eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCC--
Q 014977          122 HQSRCIGEFAFRSDVRSVKLSRDRIVVV-----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL--  194 (415)
Q Consensus       122 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~--  194 (415)
                      +.|+++........-..|.++|.....+     -.....++|..+.+....+.........-.=.+++++.+|.++-.  
T Consensus        56 eaGk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndf  135 (366)
T COG3490          56 EAGKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDF  135 (366)
T ss_pred             cCCceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCC
Confidence            5678887777777788889988654433     245678899988877766654433222222245667777765431  


Q ss_pred             --ccCeEEEEEcCC--cceEEEecCccceEEEEeCCCCCEEEEEeCC-------Cc----------EEEEEECCCCcEEE
Q 014977          195 --QRGQVRIEHFGL--NMIKLINAHDSHIACFTLTLDGLLLATASTR-------GT----------LIRIFNTVDGTRLQ  253 (415)
Q Consensus       195 --~dg~v~i~~~~~--~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d-------g~----------~I~vwd~~~~~~~~  253 (415)
                        .-|.|-||+.+.  +.+-.+..|.-....+.+.+||+.|+.+...       |.          .+.+.|..+|+.+.
T Consensus       136 d~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~lie  215 (366)
T COG3490         136 DPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIE  215 (366)
T ss_pred             CCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhh
Confidence              235677777664  4455677787778889999999998876531       00          13344444555443


Q ss_pred             EEec--CCCcccEEEEEeCCCCCEEEEEeCC
Q 014977          254 EVRR--GVDRAEIYSIALSPNVQWLAVASDK  282 (415)
Q Consensus       254 ~~~~--~~~~~~v~~l~~spdg~~l~s~s~d  282 (415)
                      +..-  ..+.-.|..++..+||+.++.+-..
T Consensus       216 kh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~  246 (366)
T COG3490         216 KHTLPASLRQLSIRHLDIGRDGTVWFGCQYR  246 (366)
T ss_pred             hccCchhhhhcceeeeeeCCCCcEEEEEEee
Confidence            3221  1234468888888888776655443

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.43  E-value=0.77  Score=42.53  Aligned_cols=219  Identities=11%  Similarity=-0.036  Sum_probs=92.1

Q ss_pred             EEEeCCCCEEEEEe--CCc--EEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCC
Q 014977           50 VSWNQDYGCFAAGT--SCG--FRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR  125 (415)
Q Consensus        50 l~~sp~g~~la~g~--d~~--v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~  125 (415)
                      =+|.+||+.|+.++  +|.  +.+.|+++.+... .+- +..........+++...++-....     ..|+..|+.+.+
T Consensus        41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q-LTd-g~g~~~~g~~~s~~~~~~~Yv~~~-----~~l~~vdL~T~e  113 (386)
T PF14583_consen   41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ-LTD-GPGDNTFGGFLSPDDRALYYVKNG-----RSLRRVDLDTLE  113 (386)
T ss_dssp             --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-----SS-B-TTT-EE-TTSSEEEEEETT-----TEEEEEETTT--
T ss_pred             CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE-Ccc-CCCCCccceEEecCCCeEEEEECC-----CeEEEEECCcCc
Confidence            35678997777655  655  4455666644322 221 111111122334443333222121     688889999987


Q ss_pred             EEEEEEcc-CceeEEEE--cCCeEEEE-------------------------eCCeEEEEEcCCceeeeEEeccCCCcce
Q 014977          126 CIGEFAFR-SDVRSVKL--SRDRIVVV-------------------------LEHKIYVYSFVDLKLLHQIETLANLRGL  177 (415)
Q Consensus       126 ~~~~~~~~-~~i~~l~~--~~~~~~~~-------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~  177 (415)
                      ....+... ..+-...|  +.|+..++                         ....|.-.|+.+|+....+.... -..-
T Consensus       114 ~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~-wlgH  192 (386)
T PF14583_consen  114 ERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTD-WLGH  192 (386)
T ss_dssp             EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS--EEE
T ss_pred             EEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCc-cccC
Confidence            76666633 33322333  44555554                         12356667778877655554322 1222


Q ss_pred             EEEecCCCceEEEEe--CCccCe-EEEEEcC--CcceEEEecCc--cceEEEEeCCCCCEEEEEe-----CCCcEEEEEE
Q 014977          178 CCLSHHSSTSVLACP--GLQRGQ-VRIEHFG--LNMIKLINAHD--SHIACFTLTLDGLLLATAS-----TRGTLIRIFN  245 (415)
Q Consensus       178 ~~~~~~~~~~~l~~~--g~~dg~-v~i~~~~--~~~~~~~~~~~--~~i~~l~~sp~g~~l~s~s-----~dg~~I~vwd  245 (415)
                      ..++|...+ +|+++  |-.+.. -+||..+  +...+.+..+.  ..+.-=-|.|||..|.--+     .+.. |.-+|
T Consensus       193 ~~fsP~dp~-li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~-i~~~d  270 (386)
T PF14583_consen  193 VQFSPTDPT-LIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFW-IAGYD  270 (386)
T ss_dssp             EEEETTEEE-EEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EE-EEEE-
T ss_pred             cccCCCCCC-EEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceE-EEeeC
Confidence            334443322 33331  222221 2555543  33344333332  2233345899998665422     2334 77788


Q ss_pred             CCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCC
Q 014977          246 TVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK  282 (415)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d  282 (415)
                      +.+++.......    .....+--++||++++-=+.|
T Consensus       271 ~~t~~~~~~~~~----p~~~H~~ss~Dg~L~vGDG~d  303 (386)
T PF14583_consen  271 PDTGERRRLMEM----PWCSHFMSSPDGKLFVGDGGD  303 (386)
T ss_dssp             TTT--EEEEEEE-----SEEEEEE-TTSSEEEEEE--
T ss_pred             CCCCCceEEEeC----CceeeeEEcCCCCEEEecCCC
Confidence            888876433332    134566678999988754443

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=96.38  E-value=0.0007  Score=64.51  Aligned_cols=162  Identities=14%  Similarity=0.064  Sum_probs=96.3

Q ss_pred             ccCCCCCCceEEEEEeC-CCCEEEEEe-----CCcEEEEEccCCc--eeEEEeccC-CCeeEEEEeeeCCeEEEEecCCC
Q 014977           38 AFSDVDEIELISVSWNQ-DYGCFAAGT-----SCGFRIYNCEPFK--ETFRRDLKS-GGFRIVEMLFRCNILALVGAGDN  108 (415)
Q Consensus        38 ~~~~~h~~~V~~l~~sp-~g~~la~g~-----d~~v~iw~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~l~s~~~d  108 (415)
                      ....+|....++++|++ |...||+|-     |..+.|||+.+.-  ..-...|.. .......++|..+..++.+|...
T Consensus        96 E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~s  175 (783)
T KOG1008|consen   96 EVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTS  175 (783)
T ss_pred             eecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhccccc
Confidence            34567888899999998 667888875     5679999997641  111111111 22233366677777777777765


Q ss_pred             CCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcC-CeEEEE--eCCeEEEEEc-CCc-eeeeEEeccCC--C--cceEE
Q 014977          109 SQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSR-DRIVVV--LEHKIYVYSF-VDL-KLLHQIETLAN--L--RGLCC  179 (415)
Q Consensus       109 ~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~-~~~~~~--~d~~i~iwd~-~~~-~~~~~~~~~~~--~--~~~~~  179 (415)
                           ..+.++|++........-....+..+.+.| .+.+++  .|+.|.+||. ..- .++..+....+  +  ...++
T Consensus       176 -----r~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~a  250 (783)
T KOG1008|consen  176 -----RSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALA  250 (783)
T ss_pred             -----chhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEE
Confidence                 789999976432221111344677788888 677777  7999999993 221 22222221111  1  33444


Q ss_pred             EecCCCceEEEEeCCccCeEEEEEcC
Q 014977          180 LSHHSSTSVLACPGLQRGQVRIEHFG  205 (415)
Q Consensus       180 ~~~~~~~~~l~~~g~~dg~v~i~~~~  205 (415)
                      +.|...|. +++.....++|++++..
T Consensus       251 ycPtrtgl-la~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  251 YCPTRTGL-LAVLSRDSITIRLYDIC  275 (783)
T ss_pred             eccCCcch-hhhhccCcceEEEeccc
Confidence            55544443 33334566777776654

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.31  E-value=0.7  Score=40.75  Aligned_cols=167  Identities=9%  Similarity=0.013  Sum_probs=91.1

Q ss_pred             CCCCCceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeE-EEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEE
Q 014977           41 DVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETF-RRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIW  119 (415)
Q Consensus        41 ~~h~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vw  119 (415)
                      .+-...|.++.|+|+.+.|.+-.+..-.|-.+.+.+.++ ...+ .+-...-.+.|..++.++++-..+     +.+.++
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL-~g~~DpE~Ieyig~n~fvi~dER~-----~~l~~~  155 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPL-TGFSDPETIEYIGGNQFVIVDERD-----RALYLF  155 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecc-cccCChhHeEEecCCEEEEEehhc-----ceEEEE
Confidence            444555999999999988887774444455555444433 3333 223333456778888888888777     888888


Q ss_pred             ECCCCCEEEE-----EE-----c-cCceeEEEEcCCeEEEE---eCCeEEEEEcCCce-e--eeEEeccCCC--c---ce
Q 014977          120 DDHQSRCIGE-----FA-----F-RSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLK-L--LHQIETLANL--R---GL  177 (415)
Q Consensus       120 d~~~~~~~~~-----~~-----~-~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~-~--~~~~~~~~~~--~---~~  177 (415)
                      .+..+..+..     +.     + ......++|.|....+.   ..+-+.||.+.... .  ++....+...  .   .+
T Consensus       156 ~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~Dv  235 (316)
T COG3204         156 TVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDV  235 (316)
T ss_pred             EEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecc
Confidence            7765532222     21     2 45677899998654444   34445555543221 1  1111111111  1   12


Q ss_pred             EEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEe
Q 014977          178 CCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLIN  213 (415)
Q Consensus       178 ~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~  213 (415)
                      ..+.+++....+.+-+.+++.+.--+..+..+..+.
T Consensus       236 Sgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~ls  271 (316)
T COG3204         236 SGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLS  271 (316)
T ss_pred             ccceecCCCCcEEEEecCCceEEEEecCCCeeeeEE
Confidence            334454333333333556665555666666554443

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.19  E-value=0.02  Score=35.56  Aligned_cols=35  Identities=17%  Similarity=0.379  Sum_probs=30.5

Q ss_pred             ccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEE
Q 014977          216 DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRL  252 (415)
Q Consensus       216 ~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~  252 (415)
                      ...|..++|+|...+||.++.+|. |.+|.+ +++.+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~-v~v~Rl-~~qri   45 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGE-VLVYRL-NWQRI   45 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCe-EEEEEC-CCcCc
Confidence            456889999999999999999999 999998 66543

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.14  E-value=0.27  Score=40.92  Aligned_cols=106  Identities=8%  Similarity=0.069  Sum_probs=64.4

Q ss_pred             CCCEEEEEe---CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE
Q 014977           55 DYGCFAAGT---SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA  131 (415)
Q Consensus        55 ~g~~la~g~---d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~  131 (415)
                      +|.++.+.+   ...|++|++.+++......+.....---.+.-..+..+..+..+      +.-..+|..+-+++..+.
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~e------gvaf~~d~~t~~~lg~~~  128 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKE------GVAFKYDADTLEELGRFS  128 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEecc------ceeEEEChHHhhhhcccc
Confidence            344444443   56799999999888877766311111112333455666666443      888899998888888888


Q ss_pred             ccCceeEEEEcCCeEEEEeCC--eEEEEEcCCceeeeE
Q 014977          132 FRSDVRSVKLSRDRIVVVLEH--KIYVYSFVDLKLLHQ  167 (415)
Q Consensus       132 ~~~~i~~l~~~~~~~~~~~d~--~i~iwd~~~~~~~~~  167 (415)
                      ..+.=..++..... ++..||  +++.-|.++.....+
T Consensus       129 y~GeGWgLt~d~~~-LimsdGsatL~frdP~tfa~~~~  165 (262)
T COG3823         129 YEGEGWGLTSDDKN-LIMSDGSATLQFRDPKTFAELDT  165 (262)
T ss_pred             cCCcceeeecCCcc-eEeeCCceEEEecCHHHhhhcce
Confidence            77777777655444 333444  455555555444333

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=96.06  E-value=0.21  Score=47.06  Aligned_cols=80  Identities=16%  Similarity=0.230  Sum_probs=55.7

Q ss_pred             EEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCC------CcccEEEEEeC-----CCC---CE
Q 014977          210 KLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGV------DRAEIYSIALS-----PNV---QW  275 (415)
Q Consensus       210 ~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~------~~~~v~~l~~s-----pdg---~~  275 (415)
                      ..+....++|++++.|.=| ++|.|..+|. +.|.|++....++.-.-..      ....|+++.|+     .|+   -.
T Consensus        80 ~l~~~~~g~vtal~~S~iG-Fvaigy~~G~-l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~  157 (395)
T PF08596_consen   80 TLLDAKQGPVTALKNSDIG-FVAIGYESGS-LVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSIC  157 (395)
T ss_dssp             EEE---S-SEEEEEE-BTS-EEEEEETTSE-EEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEE
T ss_pred             hheeccCCcEeEEecCCCc-EEEEEecCCc-EEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceE
Confidence            3344567899999997555 9999999999 9999998877776633211      23467888886     233   47


Q ss_pred             EEEEeCCCeEEEEEce
Q 014977          276 LAVASDKGTVHIFSLR  291 (415)
Q Consensus       276 l~s~s~dg~i~vwd~~  291 (415)
                      |++|+..|.+.+|.+-
T Consensus       158 L~vGTn~G~v~~fkIl  173 (395)
T PF08596_consen  158 LLVGTNSGNVLTFKIL  173 (395)
T ss_dssp             EEEEETTSEEEEEEEE
T ss_pred             EEEEeCCCCEEEEEEe
Confidence            8899999999999986

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.06  E-value=0.95  Score=39.95  Aligned_cols=200  Identities=10%  Similarity=0.084  Sum_probs=112.3

Q ss_pred             EEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEE
Q 014977           48 ISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCI  127 (415)
Q Consensus        48 ~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~  127 (415)
                      ...+|-+.+............+|..+-.-.+..+.+.+....+.++.|+|+...|.+..+.     ..-.|+=..+|+.+
T Consensus        46 f~~a~~k~~~~~~~~~~r~~~~~l~~y~~~i~akpi~g~~~nvS~LTynp~~rtLFav~n~-----p~~iVElt~~Gdli  120 (316)
T COG3204          46 FPCAWFKAGQTNGLDLSRYIARYLLEYRARIDAKPILGETANVSSLTYNPDTRTLFAVTNK-----PAAIVELTKEGDLI  120 (316)
T ss_pred             eeeEEEeccccccccccchhhhccCCceEEEeccccccccccccceeeCCCcceEEEecCC-----CceEEEEecCCceE
Confidence            3344444444333322222445554422222222233445558899999988777666655     56666666889999


Q ss_pred             EEEE--ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeE-------Eecc-CCCcceEEEecCCCceEEEEeCC
Q 014977          128 GEFA--FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQ-------IETL-ANLRGLCCLSHHSSTSVLACPGL  194 (415)
Q Consensus       128 ~~~~--~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~-------~~~~-~~~~~~~~~~~~~~~~~l~~~g~  194 (415)
                      ..+.  .-.....|.+..++++++   .++.++++.+.....+..       +... ....+.-.+++++....+.+ .-
T Consensus       121 rtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~-aK  199 (316)
T COG3204         121 RTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFV-AK  199 (316)
T ss_pred             EEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEE-EE
Confidence            9987  345566788999999888   577888887754322111       1111 11345566777777666655 33


Q ss_pred             ccCeEEEEEcCCcc----eEEEecC-------ccceEEEEeCC-CCCEEEEEeCCCcEEEEEECCCCcEEEEE
Q 014977          195 QRGQVRIEHFGLNM----IKLINAH-------DSHIACFTLTL-DGLLLATASTRGTLIRIFNTVDGTRLQEV  255 (415)
Q Consensus       195 ~dg~v~i~~~~~~~----~~~~~~~-------~~~i~~l~~sp-~g~~l~s~s~dg~~I~vwd~~~~~~~~~~  255 (415)
                      +..-+.|+..+...    ......+       -..+.++.|++ .+.+|+-+.+++. +.-.|. +|+.+..+
T Consensus       200 Er~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~-l~Evd~-~G~~~~~l  270 (316)
T COG3204         200 ERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRR-LLEVDL-SGEVIELL  270 (316)
T ss_pred             ccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCce-EEEEec-CCCeeeeE
Confidence            44555553333211    1111111       23466778886 4556666777776 777775 55554433

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.96  E-value=0.022  Score=47.85  Aligned_cols=104  Identities=16%  Similarity=0.157  Sum_probs=68.6

Q ss_pred             EEEeCCccCeEEEEEcCC--cceEEEecCccceE-EEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCc-ccE
Q 014977          189 LACPGLQRGQVRIEHFGL--NMIKLINAHDSHIA-CFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDR-AEI  264 (415)
Q Consensus       189 l~~~g~~dg~v~i~~~~~--~~~~~~~~~~~~i~-~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~-~~v  264 (415)
                      +++ |..+|.|++|....  ............|. .|.--.++.+..+++.||. |+.|++.-++.+.....  |. .++
T Consensus        73 ~~v-G~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~-ir~~n~~p~k~~g~~g~--h~~~~~  148 (238)
T KOG2444|consen   73 LMV-GTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGR-IRACNIKPNKVLGYVGQ--HNFESG  148 (238)
T ss_pred             EEe-ecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCc-eeeeccccCceeeeecc--ccCCCc
Confidence            444 77899999966652  22111111222222 2223345668899999999 99999988887765554  44 456


Q ss_pred             EEEEeCCCCCEEEEE--eCCCeEEEEEceecccC
Q 014977          265 YSIALSPNVQWLAVA--SDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       265 ~~l~~spdg~~l~s~--s~dg~i~vwd~~~~~~~  296 (415)
                      ..+..+..+++|+.+  |.|..++.|++..-...
T Consensus       149 e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~d~  182 (238)
T KOG2444|consen  149 EELIVVGSDEFLKIADTSHDRVLKKWNVEKIKDE  182 (238)
T ss_pred             ceeEEecCCceEEeeccccchhhhhcchhhhhcc
Confidence            666666777788877  88888888888776543

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.77  E-value=0.79  Score=38.27  Aligned_cols=168  Identities=14%  Similarity=0.087  Sum_probs=90.5

Q ss_pred             eEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEcc-Ccee--EEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCC
Q 014977           99 ILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFR-SDVR--SVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLAN  173 (415)
Q Consensus        99 ~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~-~~i~--~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~  173 (415)
                      +.++.+.+..   ....|++||+.+|+.+...... ..+.  .+.-..|..+..  .++...++|..+.+.+..+.-.. 
T Consensus        56 g~i~esTG~y---g~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~G-  131 (262)
T COG3823          56 GHILESTGLY---GFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEG-  131 (262)
T ss_pred             CEEEEecccc---ccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCC-
Confidence            3556555542   3478999999999988776633 2222  122233444444  68999999998888877665433 


Q ss_pred             CcceEEEecCCCceEEEEeCCccCeEEE-E--EcCCcceEEEe--cCccce---EEEEeCCCCCEEEEEeCCCcEEEEEE
Q 014977          174 LRGLCCLSHHSSTSVLACPGLQRGQVRI-E--HFGLNMIKLIN--AHDSHI---ACFTLTLDGLLLATASTRGTLIRIFN  245 (415)
Q Consensus       174 ~~~~~~~~~~~~~~~l~~~g~~dg~v~i-~--~~~~~~~~~~~--~~~~~i---~~l~~sp~g~~l~s~s~dg~~I~vwd  245 (415)
                        .-..+..+..+  |+. +  ||+-.+ |  ..+......+.  ....+|   +-+.|- +|.+.|-.-.+.. |...|
T Consensus       132 --eGWgLt~d~~~--Lim-s--dGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~-I~rI~  202 (262)
T COG3823         132 --EGWGLTSDDKN--LIM-S--DGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTR-IARID  202 (262)
T ss_pred             --cceeeecCCcc--eEe-e--CCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecc-eEEEc
Confidence              23455555544  333 2  343333 1  11212222111  112222   223332 5555554444444 66666


Q ss_pred             CCCCcEEEEEec----------CCCcccEEEEEeCCCC-CEEEEE
Q 014977          246 TVDGTRLQEVRR----------GVDRAEIYSIALSPNV-QWLAVA  279 (415)
Q Consensus       246 ~~~~~~~~~~~~----------~~~~~~v~~l~~spdg-~~l~s~  279 (415)
                      ..+|+.+..+..          ..+....+.+++.|++ +++++|
T Consensus       203 p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         203 PDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             CCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            677766655432          1134467889999987 455555

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=95.69  E-value=1.6  Score=39.71  Aligned_cols=199  Identities=11%  Similarity=0.059  Sum_probs=105.5

Q ss_pred             eEEEEEeCCCCEEEEEe---CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECC-
Q 014977           47 LISVSWNQDYGCFAAGT---SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH-  122 (415)
Q Consensus        47 V~~l~~sp~g~~la~g~---d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~-  122 (415)
                      ...++++.||+++.+..   ...|.|-|++..+...+.... +   +..+-..++..+..-|++      |.+....+. 
T Consensus        97 ~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P-G---C~~iyP~~~~~F~~lC~D------Gsl~~v~Ld~  166 (342)
T PF06433_consen   97 KNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP-G---CWLIYPSGNRGFSMLCGD------GSLLTVTLDA  166 (342)
T ss_dssp             GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT-S---EEEEEEEETTEEEEEETT------SCEEEEEETS
T ss_pred             ccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC-C---EEEEEecCCCceEEEecC------CceEEEEECC
Confidence            34558899999998876   778999999876655444331 1   222223333334444443      888777776 


Q ss_pred             CCCEEEEEE--c---cCce-eEEEEc-CCeEEEE--eCCeEEEEEcCCcee--eeEEecc----------CCCcceEEEe
Q 014977          123 QSRCIGEFA--F---RSDV-RSVKLS-RDRIVVV--LEHKIYVYSFVDLKL--LHQIETL----------ANLRGLCCLS  181 (415)
Q Consensus       123 ~~~~~~~~~--~---~~~i-~~l~~~-~~~~~~~--~d~~i~iwd~~~~~~--~~~~~~~----------~~~~~~~~~~  181 (415)
                      .|+......  +   ..++ ..-.+. .++.++.  .+|.|+-.|+.....  ...+..-          ......++++
T Consensus       167 ~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~  246 (342)
T PF06433_consen  167 DGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYH  246 (342)
T ss_dssp             TSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEE
T ss_pred             CCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeec
Confidence            566654432  1   1222 222333 3344443  789999888865432  2222110          1112344555


Q ss_pred             cCCCceEEEEeCC-----ccCeEEEEEcC---CcceEEEecCccceEEEEeCCCCC-EEEEE-eCCCcEEEEEECCCCcE
Q 014977          182 HHSSTSVLACPGL-----QRGQVRIEHFG---LNMIKLINAHDSHIACFTLTLDGL-LLATA-STRGTLIRIFNTVDGTR  251 (415)
Q Consensus       182 ~~~~~~~l~~~g~-----~dg~v~i~~~~---~~~~~~~~~~~~~i~~l~~sp~g~-~l~s~-s~dg~~I~vwd~~~~~~  251 (415)
                      ...+..+++.-..     .++--.||..+   .+.+..+.. ..++.+|..+.+.+ +|++. ..++. +.+||..+|+.
T Consensus       247 ~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~-l~v~D~~tGk~  324 (342)
T PF06433_consen  247 AASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGT-LDVYDAATGKL  324 (342)
T ss_dssp             TTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTE-EEEEETTT--E
T ss_pred             cccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCe-EEEEeCcCCcE
Confidence            4433333322111     23333444433   344444442 34677999998776 56544 45788 99999999999


Q ss_pred             EEEEec
Q 014977          252 LQEVRR  257 (415)
Q Consensus       252 ~~~~~~  257 (415)
                      +.++..
T Consensus       325 ~~~~~~  330 (342)
T PF06433_consen  325 VRSIEQ  330 (342)
T ss_dssp             EEEE--
T ss_pred             Eeehhc
Confidence            998875

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.59  E-value=1.5  Score=38.71  Aligned_cols=117  Identities=17%  Similarity=0.164  Sum_probs=69.4

Q ss_pred             eEEEecCCCceEEEEeC--CccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEE-CCCCcEE-
Q 014977          177 LCCLSHHSSTSVLACPG--LQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFN-TVDGTRL-  252 (415)
Q Consensus       177 ~~~~~~~~~~~~l~~~g--~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd-~~~~~~~-  252 (415)
                      ....+.++++..+++..  .....+++..........+.  ...+....|+++|...+....+.. .+++. ..+++.. 
T Consensus        26 ~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~--g~~l~~PS~d~~g~~W~v~~~~~~-~~~~~~~~~g~~~~  102 (253)
T PF10647_consen   26 VTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLT--GGSLTRPSWDPDGWVWTVDDGSGG-VRVVRDSASGTGEP  102 (253)
T ss_pred             ccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeecc--CCccccccccCCCCEEEEEcCCCc-eEEEEecCCCccee
Confidence            33444445555565544  23344554544443333333  337788899999887777666666 66663 3344322 


Q ss_pred             EEEecCCCcccEEEEEeCCCCCEEEEEe---CCCeEEEEEceecccC
Q 014977          253 QEVRRGVDRAEIYSIALSPNVQWLAVAS---DKGTVHIFSLRVRVVG  296 (415)
Q Consensus       253 ~~~~~~~~~~~v~~l~~spdg~~l~s~s---~dg~i~vwd~~~~~~~  296 (415)
                      ..+........|..+.+||||..+|...   .++.|.|=-+......
T Consensus       103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g  149 (253)
T PF10647_consen  103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDG  149 (253)
T ss_pred             EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCC
Confidence            2233211222799999999999888766   3578888887766543

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PRK10115 protease 2; Provisional

Probab=95.58  E-value=3.2  Score=42.49  Aligned_cols=240  Identities=13%  Similarity=0.072  Sum_probs=116.0

Q ss_pred             CceEEEEEeCCCCEEEEEe--CC----cEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCC-CCCCeEE
Q 014977           45 IELISVSWNQDYGCFAAGT--SC----GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQ-YPPTKVI  117 (415)
Q Consensus        45 ~~V~~l~~sp~g~~la~g~--d~----~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~-~~~~~i~  117 (415)
                      -.+..+.++|||++|+.+.  +|    .+++.|+.++..+ ...+....   ..+.|.+++..++-...+.. .....|.
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l-~~~i~~~~---~~~~w~~D~~~~~y~~~~~~~~~~~~v~  202 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWY-PELLDNVE---PSFVWANDSWTFYYVRKHPVTLLPYQVW  202 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCC-CccccCcc---eEEEEeeCCCEEEEEEecCCCCCCCEEE
Confidence            4577889999999999876  23    3677788765422 11221211   34677766543332222211 1336888


Q ss_pred             EEECCCC--CEEEEEEc-cCcee-EEEEcCCeEEEE------eCCeEEEEEc--CCceeeeEEeccCCCcceEEEecCCC
Q 014977          118 IWDDHQS--RCIGEFAF-RSDVR-SVKLSRDRIVVV------LEHKIYVYSF--VDLKLLHQIETLANLRGLCCLSHHSS  185 (415)
Q Consensus       118 vwd~~~~--~~~~~~~~-~~~i~-~l~~~~~~~~~~------~d~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (415)
                      .+++.++  +....+.. ..... .+..+.++.+++      .++.+.+++.  .+++....+..... ... .+.... 
T Consensus       203 ~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~-  279 (686)
T PRK10115        203 RHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKD-HEY-SLDHYQ-  279 (686)
T ss_pred             EEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCC-CEE-EEEeCC-
Confidence            9998888  33333442 22222 333444666554      3578888885  23332222222221 122 222212 


Q ss_pred             ceEEEEeCCccCeEEE--EEcC-CcceEEEecC-c-cceEEEEeCCCCCEEEEEeCCCc-EEEEEECCCCcEEEEEecCC
Q 014977          186 TSVLACPGLQRGQVRI--EHFG-LNMIKLINAH-D-SHIACFTLTLDGLLLATASTRGT-LIRIFNTVDGTRLQEVRRGV  259 (415)
Q Consensus       186 ~~~l~~~g~~dg~v~i--~~~~-~~~~~~~~~~-~-~~i~~l~~sp~g~~l~s~s~dg~-~I~vwd~~~~~~~~~~~~~~  259 (415)
                      +.+++.+.......+|  .+.. ......+..+ . ..+..+.+. .+.++++...++. .+.+++..+ ..+..+.-. 
T Consensus       280 ~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~-~~~~~l~~~-  356 (686)
T PRK10115        280 HRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKT-REVIGIAFD-  356 (686)
T ss_pred             CEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCC-CceEEecCC-
Confidence            2333333221222333  2222 1222344444 2 367777776 3345556666665 144455433 334444311 


Q ss_pred             CcccEEEEEeC--CCCC-EEEEEeC---CCeEEEEEceecc
Q 014977          260 DRAEIYSIALS--PNVQ-WLAVASD---KGTVHIFSLRVRV  294 (415)
Q Consensus       260 ~~~~v~~l~~s--pdg~-~l~s~s~---dg~i~vwd~~~~~  294 (415)
                      ....+..+.++  +++. ++++.+.   -+.++.+|+.+++
T Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~  397 (686)
T PRK10115        357 DPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE  397 (686)
T ss_pred             CCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence            12223334444  4443 4443332   3678888887754

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.56  E-value=1.7  Score=39.22  Aligned_cols=190  Identities=13%  Similarity=0.101  Sum_probs=82.7

Q ss_pred             CCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCC-CCEEEEE--Ec----cCceeEEEEcCCeEEEEeCCeEEEEE
Q 014977           86 GGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ-SRCIGEF--AF----RSDVRSVKLSRDRIVVVLEHKIYVYS  158 (415)
Q Consensus        86 ~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~-~~~~~~~--~~----~~~i~~l~~~~~~~~~~~d~~i~iwd  158 (415)
                      ....+.++.|.....-++.+..      +.|  +.... |+.=...  ..    .....++.|..+.-+++.+..+.+..
T Consensus        15 t~~~l~dV~F~d~~~G~~VG~~------g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~g~ll~T   86 (302)
T PF14870_consen   15 TDKPLLDVAFVDPNHGWAVGAY------GTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEPGLLLHT   86 (302)
T ss_dssp             -SS-EEEEEESSSS-EEEEETT------TEE--EEESSTTSS-EE-----S-----EEEEEEEETTEEEEEEETTEEEEE
T ss_pred             CCCceEEEEEecCCEEEEEecC------CEE--EEECCCCccccccccCCCccceeeEEEEEecCCceEEEcCCceEEEe
Confidence            3446777777765555555443      443  32222 2221111  11    23466788877766666333333333


Q ss_pred             cCCceeeeEEecc-CCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcc-eEEEecCccceEEEEeCCCCCEEEEEeC
Q 014977          159 FVDLKLLHQIETL-ANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNM-IKLINAHDSHIACFTLTLDGLLLATAST  236 (415)
Q Consensus       159 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~-~~~~~~~~~~i~~l~~sp~g~~l~s~s~  236 (415)
                      ...++.=..+... .-+.....+...+++..+++ + ..|.|+.-...++. ......-.+.+..+..+++|++++++..
T Consensus        87 ~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~-~-~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~  164 (302)
T PF14870_consen   87 TDGGKTWERVPLSSKLPGSPFGITALGDGSAELA-G-DRGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSR  164 (302)
T ss_dssp             SSTTSS-EE----TT-SS-EEEEEEEETTEEEEE-E-TT--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETT
T ss_pred             cCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEE-c-CCCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECc
Confidence            3334322222211 11112222222223333333 3 35666653333332 2223444577888999999998888765


Q ss_pred             CCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEE
Q 014977          237 RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFS  289 (415)
Q Consensus       237 dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd  289 (415)
                      -.. ..-||--.. .-...... ....|..|.|.|++.+.+.+ ..|.|++=+
T Consensus       165 G~~-~~s~~~G~~-~w~~~~r~-~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~  213 (302)
T PF14870_consen  165 GNF-YSSWDPGQT-TWQPHNRN-SSRRIQSMGFSPDGNLWMLA-RGGQIQFSD  213 (302)
T ss_dssp             SSE-EEEE-TT-S-S-EEEE---SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE
T ss_pred             ccE-EEEecCCCc-cceEEccC-ccceehhceecCCCCEEEEe-CCcEEEEcc
Confidence            444 667774221 11222221 34589999999998876644 788787766

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=95.52  E-value=1.7  Score=38.75  Aligned_cols=218  Identities=10%  Similarity=0.081  Sum_probs=115.8

Q ss_pred             CceEEEEEeCCCCEEEEEe-CCcEEEEEccC-----CceeEEEeccC-----CCeeEEEEeeeCCeEE------------
Q 014977           45 IELISVSWNQDYGCFAAGT-SCGFRIYNCEP-----FKETFRRDLKS-----GGFRIVEMLFRCNILA------------  101 (415)
Q Consensus        45 ~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~-----~~~~~~~~~~~-----~~~~~~~~~~~~~~~~------------  101 (415)
                      .--+.|+|+|.+.+-++.. .+...+||.++     ....+...+..     .......+.|+....+            
T Consensus        23 ~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~  102 (336)
T TIGR03118        23 RNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR  102 (336)
T ss_pred             cccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence            3468899999887766666 88899999972     12222223221     1223445555533222            


Q ss_pred             EEecCCCCCCCCCeEEEEECCCCCE-----EEEEE--ccCc-eeEEEEcC----CeEEEE--eCCeEEEEEcCCceeeeE
Q 014977          102 LVGAGDNSQYPPTKVIIWDDHQSRC-----IGEFA--FRSD-VRSVKLSR----DRIVVV--LEHKIYVYSFVDLKLLHQ  167 (415)
Q Consensus       102 l~s~~~d~~~~~~~i~vwd~~~~~~-----~~~~~--~~~~-i~~l~~~~----~~~~~~--~d~~i~iwd~~~~~~~~~  167 (415)
                      ++.++++     |+|.-|...-+..     ...+.  .... -..+++..    +..+++  ..++|.|||-. ...+..
T Consensus       103 Fif~tEd-----GTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~-f~~~~~  176 (336)
T TIGR03118       103 FLFVTED-----GTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS-FRPPPL  176 (336)
T ss_pred             EEEEeCC-----ceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc-cccccC
Confidence            2333444     8999998432221     11222  1222 33455542    223333  57888888842 222211


Q ss_pred             EeccCCCcceEEEecCCCceEEEEeCCccCeEEE-EEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEEC
Q 014977          168 IETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI-EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNT  246 (415)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i-~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~  246 (415)
                      -.....+.-...++|  -+  +..   -.+.+++ |-.+                   .++++.=+.+..-|. |.+||+
T Consensus       177 ~g~F~DP~iPagyAP--Fn--Iqn---ig~~lyVtYA~q-------------------d~~~~d~v~G~G~G~-VdvFd~  229 (336)
T TIGR03118       177 PGSFIDPALPAGYAP--FN--VQN---LGGTLYVTYAQQ-------------------DADRNDEVAGAGLGY-VNVFTL  229 (336)
T ss_pred             CCCccCCCCCCCCCC--cc--eEE---ECCeEEEEEEec-------------------CCcccccccCCCcce-EEEEcC
Confidence            000011101111222  11  111   1245555 4332                   222222233445677 999996


Q ss_pred             CCCcEEEEEecCCCcccEEEEEeCC------CCCEEEEEeCCCeEEEEEceecccC
Q 014977          247 VDGTRLQEVRRGVDRAEIYSIALSP------NVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       247 ~~~~~~~~~~~~~~~~~v~~l~~sp------dg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                       .|..++++.....-...+.|+..|      .|.+|+---.||+|..||..+++-.
T Consensus       230 -~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~  284 (336)
T TIGR03118       230 -NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQL  284 (336)
T ss_pred             -CCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCcee
Confidence             788888886433445667888765      5677777667999999999988754

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.29  E-value=1.4  Score=45.60  Aligned_cols=104  Identities=11%  Similarity=0.104  Sum_probs=68.2

Q ss_pred             EEEEeCCCCEEEEEe-CCcEEEEEccCC-ceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCE
Q 014977           49 SVSWNQDYGCFAAGT-SCGFRIYNCEPF-KETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRC  126 (415)
Q Consensus        49 ~l~~sp~g~~la~g~-d~~v~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~  126 (415)
                      .++-.-.+..+++|+ .|.+-..|+... +. +... .....++.+++|+.++..++.|-.+     |.|.+||+.+++.
T Consensus        92 v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~-~~~n-e~v~~~Vtsvafn~dg~~l~~G~~~-----G~V~v~D~~~~k~  164 (1206)
T KOG2079|consen   92 VISSAIVVVPIVIGTSHGHVLLSDMTGNLGP-LHQN-ERVQGPVTSVAFNQDGSLLLAGLGD-----GHVTVWDMHRAKI  164 (1206)
T ss_pred             eeeeeeeeeeEEEEcCchhhhhhhhhcccch-hhcC-CccCCcceeeEecCCCceeccccCC-----CcEEEEEccCCcc
Confidence            333334455788888 777777777642 21 1111 2456778999999999999988776     9999999999999


Q ss_pred             EEEEE-ccCceeEE---EEcCCeE-EEEeCCeEEEEEc
Q 014977          127 IGEFA-FRSDVRSV---KLSRDRI-VVVLEHKIYVYSF  159 (415)
Q Consensus       127 ~~~~~-~~~~i~~l---~~~~~~~-~~~~d~~i~iwd~  159 (415)
                      ++.+. +..+..++   .+..++. .+..|..-.+|.+
T Consensus       165 l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gsf~~l  202 (1206)
T KOG2079|consen  165 LKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGSFWKL  202 (1206)
T ss_pred             eeeeeecCCccceEEEEEEeCCCcEEEEccCCCceEEE
Confidence            98887 54444443   3333443 3335544446765

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=95.15  E-value=2.7  Score=38.86  Aligned_cols=235  Identities=12%  Similarity=0.030  Sum_probs=114.6

Q ss_pred             ceEEEEEeCCCCEEEEEeCCcEEEEEccCCc-eeEEE---eccCCCeeEEEEeeeCC----eE-EEEecCCCCCCCC--C
Q 014977           46 ELISVSWNQDYGCFAAGTSCGFRIYNCEPFK-ETFRR---DLKSGGFRIVEMLFRCN----IL-ALVGAGDNSQYPP--T  114 (415)
Q Consensus        46 ~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~----~~-~l~s~~~d~~~~~--~  114 (415)
                      .-++|+|.|||++|++-..|.|++++.+... ..+..   ...........++++|+    +. +++....+.....  .
T Consensus         3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~   82 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDN   82 (331)
T ss_dssp             SEEEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEE
T ss_pred             CceEEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcce
Confidence            3578999999988887659999999833222 11111   12345667888999883    33 3433311000001  2


Q ss_pred             eEEEEECCCC-CE------EE-EEEc----cCceeEEEEcCCeEEEE---e-------------CCeEEEEEcCCcee--
Q 014977          115 KVIIWDDHQS-RC------IG-EFAF----RSDVRSVKLSRDRIVVV---L-------------EHKIYVYSFVDLKL--  164 (415)
Q Consensus       115 ~i~vwd~~~~-~~------~~-~~~~----~~~i~~l~~~~~~~~~~---~-------------d~~i~iwd~~~~~~--  164 (415)
                      .|.-|....+ ..      +. .+..    ...-..|.|.||+.+.+   .             .++|.-.+. +++.  
T Consensus        83 ~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~-dG~~p~  161 (331)
T PF07995_consen   83 RVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDP-DGSIPA  161 (331)
T ss_dssp             EEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEET-TSSB-T
T ss_pred             eeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecc-cCcCCC
Confidence            3444443333 11      11 1111    34556799999997766   1             234444442 2221  


Q ss_pred             -----------eeEE-eccCCCcceEEEecCCC-ceEEEEeCCccCeEEE-EEcCC------------------------
Q 014977          165 -----------LHQI-ETLANLRGLCCLSHHSS-TSVLACPGLQRGQVRI-EHFGL------------------------  206 (415)
Q Consensus       165 -----------~~~~-~~~~~~~~~~~~~~~~~-~~~l~~~g~~dg~v~i-~~~~~------------------------  206 (415)
                                 ...+ .+..   ....+++++. +.+.+.--+.++.-.| ....+                        
T Consensus       162 dnP~~~~~~~~~~i~A~GlR---N~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~  238 (331)
T PF07995_consen  162 DNPFVGDDGADSEIYAYGLR---NPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPS  238 (331)
T ss_dssp             TSTTTTSTTSTTTEEEE--S---EEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS
T ss_pred             CCccccCCCceEEEEEeCCC---ccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccC
Confidence                       1111 1111   3456677776 6555443233332223 11111                        


Q ss_pred             -----cceEEEecCccceEEEEeCC-------CCCEEEEEeCCCcEEEEEECCCCcEEEEEec--CCCcccEEEEEeCCC
Q 014977          207 -----NMIKLINAHDSHIACFTLTL-------DGLLLATASTRGTLIRIFNTVDGTRLQEVRR--GVDRAEIYSIALSPN  272 (415)
Q Consensus       207 -----~~~~~~~~~~~~i~~l~~sp-------~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~--~~~~~~v~~l~~spd  272 (415)
                           .++..+..| ..+..+.|..       .|.+++..-..+. |....+..+..+.....  ......+..+++.||
T Consensus       239 ~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pD  316 (331)
T PF07995_consen  239 CPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGR-IWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPD  316 (331)
T ss_dssp             -TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTE-EEEEEEETTEEEEEEEEECTTSSS-EEEEEEETT
T ss_pred             CCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCE-EEEEeeecCCCccceEEccccCCCCceEEEEcCC
Confidence                 112223333 4555666653       4455655555556 77777765533322211  113347999999999


Q ss_pred             CCEEEEEeCCCeEE
Q 014977          273 VQWLAVASDKGTVH  286 (415)
Q Consensus       273 g~~l~s~s~dg~i~  286 (415)
                      |.+.++-..+|.|+
T Consensus       317 G~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  317 GALYVSDDSDGKIY  330 (331)
T ss_dssp             SEEEEEE-TTTTEE
T ss_pred             CeEEEEECCCCeEe
Confidence            99888888888664

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.13  E-value=1.8  Score=36.89  Aligned_cols=143  Identities=10%  Similarity=0.081  Sum_probs=85.2

Q ss_pred             EEEecCCCceEEEEeCC--------ccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEE-eCCCcEEEEEE--C
Q 014977          178 CCLSHHSSTSVLACPGL--------QRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATA-STRGTLIRIFN--T  246 (415)
Q Consensus       178 ~~~~~~~~~~~l~~~g~--------~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~-s~dg~~I~vwd--~  246 (415)
                      ..-..+|+|++.+-+-.        ..|.++.|....+ +..+...-.--+.++|+.+.+.+... +.+-. |.-||  .
T Consensus       112 NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~-v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~-V~a~dyd~  189 (310)
T KOG4499|consen  112 NDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQ-VELIWNCVGISNGLAWDSDAKKFYYIDSLNYE-VDAYDYDC  189 (310)
T ss_pred             ccCccCCCCceeeeeeccccccccccccEEEEeccCCC-ceeeehhccCCccccccccCcEEEEEccCceE-EeeeecCC
Confidence            33445677777532111        1233444433332 22223333344678898887765544 44555 77787  5


Q ss_pred             CCCc-----EEEEEecCC--CcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCC
Q 014977          247 VDGT-----RLQEVRRGV--DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSF  319 (415)
Q Consensus       247 ~~~~-----~~~~~~~~~--~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (415)
                      .+|.     .+..++...  ..-..-.++...+|.+.++.-..++|...|..+|+..                       
T Consensus       190 ~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L-----------------------  246 (310)
T KOG4499|consen  190 PTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKIL-----------------------  246 (310)
T ss_pred             CcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEE-----------------------
Confidence            5553     333333210  1112334566778888888888889999999998843                       


Q ss_pred             cccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC--CEEEEEEe
Q 014977          320 DTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ--NTVVIVSM  378 (415)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~  378 (415)
                                                       ..+++|......|+|...  ..++++++
T Consensus       247 ---------------------------------~eiklPt~qitsccFgGkn~d~~yvT~a  274 (310)
T KOG4499|consen  247 ---------------------------------LEIKLPTPQITSCCFGGKNLDILYVTTA  274 (310)
T ss_pred             ---------------------------------EEEEcCCCceEEEEecCCCccEEEEEeh
Confidence                                             378999888889999775  66777766

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.85  E-value=4.9  Score=41.17  Aligned_cols=77  Identities=19%  Similarity=0.280  Sum_probs=54.0

Q ss_pred             cceEEEEeCCCCCEEEEEeCCCcEEEEEECCC----------CcE--E-EEEe------cCCCcccEEEEEeCCC---CC
Q 014977          217 SHIACFTLTLDGLLLATASTRGTLIRIFNTVD----------GTR--L-QEVR------RGVDRAEIYSIALSPN---VQ  274 (415)
Q Consensus       217 ~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~----------~~~--~-~~~~------~~~~~~~v~~l~~spd---g~  274 (415)
                      -.|..|.++|+|.+|+..|..|  |.|-.+..          |+.  . +.+.      .......|..+.|+|.   +.
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~--v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRG--VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCc--EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence            4678899999999999988876  44444421          211  1 1111      1113457899999996   57


Q ss_pred             EEEEEeCCCeEEEEEceeccc
Q 014977          275 WLAVASDKGTVHIFSLRVRVV  295 (415)
Q Consensus       275 ~l~s~s~dg~i~vwd~~~~~~  295 (415)
                      +|++-+.|+++++||+.....
T Consensus       163 ~l~vLtsdn~lR~y~~~~~~~  183 (717)
T PF10168_consen  163 HLVVLTSDNTLRLYDISDPQH  183 (717)
T ss_pred             eEEEEecCCEEEEEecCCCCC
Confidence            999999999999999976553

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.64  E-value=1.9  Score=42.95  Aligned_cols=100  Identities=10%  Similarity=0.114  Sum_probs=66.5

Q ss_pred             EEEeCCccCeEEEEEcCCcceEEEe--cCccceEEEEeC--CCCCEEEEEeCCCcEEEEEECC---------CCcEEEEE
Q 014977          189 LACPGLQRGQVRIEHFGLNMIKLIN--AHDSHIACFTLT--LDGLLLATASTRGTLIRIFNTV---------DGTRLQEV  255 (415)
Q Consensus       189 l~~~g~~dg~v~i~~~~~~~~~~~~--~~~~~i~~l~~s--p~g~~l~s~s~dg~~I~vwd~~---------~~~~~~~~  255 (415)
                      ++...+....+.||+........-.  ...+.|..+.|.  |+|+.+.+.+.... |.+|--.         +...++.+
T Consensus        43 ~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~-v~l~~Q~R~dy~~~~p~w~~i~~i  121 (631)
T PF12234_consen   43 IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHH-VLLYTQLRYDYTNKGPSWAPIRKI  121 (631)
T ss_pred             EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcE-EEEEEccchhhhcCCcccceeEEE
Confidence            3344555667888998876543322  347889999886  68998888888888 8888431         22344554


Q ss_pred             ecCCCc-ccEEEEEeCCCCCEEEEEeCCCeEEEEEce
Q 014977          256 RRGVDR-AEIYSIALSPNVQWLAVASDKGTVHIFSLR  291 (415)
Q Consensus       256 ~~~~~~-~~v~~l~~spdg~~l~s~s~dg~i~vwd~~  291 (415)
                      .-..+. .+|.+..|.++|.+++.+  .+.+.|++-.
T Consensus       122 ~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~  156 (631)
T PF12234_consen  122 DISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKW  156 (631)
T ss_pred             EeecCCCCCccceeEecCCeEEEEe--CCEEEEECCC
Confidence            332233 589999999999766544  3458888743

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=94.61  E-value=4.2  Score=38.59  Aligned_cols=142  Identities=13%  Similarity=0.056  Sum_probs=82.9

Q ss_pred             eEEEEecCCCCCCCCCeEEEEECCCCC-----EEEEEEccCceeEEEEcC-----CeEEEE--eCCeEEEEEcC--Cce-
Q 014977           99 ILALVGAGDNSQYPPTKVIIWDDHQSR-----CIGEFAFRSDVRSVKLSR-----DRIVVV--LEHKIYVYSFV--DLK-  163 (415)
Q Consensus        99 ~~~l~s~~~d~~~~~~~i~vwd~~~~~-----~~~~~~~~~~i~~l~~~~-----~~~~~~--~d~~i~iwd~~--~~~-  163 (415)
                      ...++.|+..     |.++||+...+.     .+.+.+...+|..+..-+     +...++  .-..+.||.+.  .+. 
T Consensus        37 ~d~IivGS~~-----G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~  111 (418)
T PF14727_consen   37 SDKIIVGSYS-----GILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTV  111 (418)
T ss_pred             ccEEEEeccc-----cEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCc
Confidence            3456666666     999999975543     455555788888887542     333444  68888888872  111 


Q ss_pred             ------eeeEEeccCCCcceEEE---ecCC-CceEEEEeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEE
Q 014977          164 ------LLHQIETLANLRGLCCL---SHHS-STSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLAT  233 (415)
Q Consensus       164 ------~~~~~~~~~~~~~~~~~---~~~~-~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s  233 (415)
                            .+..+..|.-......+   .+.. .++-+++.=+.||.+.+++.+.-....+...---...+.+.+.-..+++
T Consensus       112 ~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt  191 (418)
T PF14727_consen  112 EHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVT  191 (418)
T ss_pred             ccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEE
Confidence                  22222333222222222   1211 2133445567899999987776554433333222334677777778888


Q ss_pred             EeCCCcEEEEEEC
Q 014977          234 ASTRGTLIRIFNT  246 (415)
Q Consensus       234 ~s~dg~~I~vwd~  246 (415)
                      ++.+.. +.-|..
T Consensus       192 ~sss~~-l~~Yky  203 (418)
T PF14727_consen  192 ASSSWT-LECYKY  203 (418)
T ss_pred             ecCcee-EEEecH
Confidence            888877 777754

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.24  E-value=5.1  Score=40.16  Aligned_cols=212  Identities=14%  Similarity=0.076  Sum_probs=108.1

Q ss_pred             EEEEeCCCCEEEEEe-C----------CcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977           49 SVSWNQDYGCFAAGT-S----------CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (415)
Q Consensus        49 ~l~~sp~g~~la~g~-d----------~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~  117 (415)
                      -++..|-|.-+|+.- +          -.|+||+...  ..+...+ -.+..++.|-|+.+..+++..-+      |.+.
T Consensus        37 ~fa~Ap~gGpIAV~r~p~~~~~~~~a~~~I~If~~sG--~lL~~~~-w~~~~lI~mgWs~~eeLI~v~k~------g~v~  107 (829)
T KOG2280|consen   37 YFACAPFGGPIAVTRSPSKLVPLYSARPYIRIFNISG--QLLGRIL-WKHGELIGMGWSDDEELICVQKD------GTVH  107 (829)
T ss_pred             EEEecccCCceEEEecccccccccccceeEEEEeccc--cchHHHH-hcCCCeeeecccCCceEEEEecc------ceEE
Confidence            344456666666554 3          1266666553  2222222 22337889999998877766544      9999


Q ss_pred             EEECCCCCEEEE--EE---ccCceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEec-cCCCcceEEEecCCC---ce
Q 014977          118 IWDDHQSRCIGE--FA---FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIET-LANLRGLCCLSHHSS---TS  187 (415)
Q Consensus       118 vwd~~~~~~~~~--~~---~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~  187 (415)
                      ||++.. ..+..  ..   ....|..+.+..+|..+. .+|.+.+-+-.....+..+.. +.+.....+|...++   ..
T Consensus       108 Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~GVavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~  186 (829)
T KOG2280|consen  108 VYGLLG-EFIESNSVGFESQMSDIVECRFFHNGVAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQST  186 (829)
T ss_pred             Eeecch-hhhcccccccccccCceeEEEEecCceEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcce
Confidence            999643 33322  11   344566667767777776 566665544221112222221 111112223332222   11


Q ss_pred             EEEEeCCccCeEEE-EEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEE
Q 014977          188 VLACPGLQRGQVRI-EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYS  266 (415)
Q Consensus       188 ~l~~~g~~dg~v~i-~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~  266 (415)
                      .++-..-..+.... -.........+......+..+..||+.++|+--...|. |.+-+....+.+..+....+. +...
T Consensus       187 ~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~-i~~vs~D~~~~lce~~~~~~~-~p~q  264 (829)
T KOG2280|consen  187 ILLDVDVAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGK-IWVVSIDLSQILCEFNCTDHD-PPKQ  264 (829)
T ss_pred             eEEeechhhhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCc-EEEEecchhhhhhccCCCCCC-chHh
Confidence            11111100000000 00011111222222456778899999999999999999 999888777777776643232 2235


Q ss_pred             EEeCCC
Q 014977          267 IALSPN  272 (415)
Q Consensus       267 l~~spd  272 (415)
                      ++|..+
T Consensus       265 m~Wcgn  270 (829)
T KOG2280|consen  265 MAWCGN  270 (829)
T ss_pred             ceeecC
Confidence            555443

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=94.20  E-value=8  Score=40.07  Aligned_cols=243  Identities=14%  Similarity=0.093  Sum_probs=120.0

Q ss_pred             CCCCceEEEEEeCCC------CEEEEEe-CCcEEE-EEccCCceeEEEecc--CCCeeEEEEeeeCCeEEEEecCCCCCC
Q 014977           42 VDEIELISVSWNQDY------GCFAAGT-SCGFRI-YNCEPFKETFRRDLK--SGGFRIVEMLFRCNILALVGAGDNSQY  111 (415)
Q Consensus        42 ~h~~~V~~l~~sp~g------~~la~g~-d~~v~i-w~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~s~~~d~~~  111 (415)
                      .-...|.|+.++|-|      +++++|. +..+.+ .-+..........+.  .-+..+.-..+-.+..+|..+..|   
T Consensus       528 ~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgd---  604 (1096)
T KOG1897|consen  528 EFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGD---  604 (1096)
T ss_pred             eecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCC---
Confidence            345689999999743      2788888 555444 333333322222221  122334445555655566555555   


Q ss_pred             CCCeEEEEE--CCCCCEEEEEE---ccCceeEEEEcCC--eEEEE-eCCeEEEEEcCCceeeeE-EeccCCCcceEEEec
Q 014977          112 PPTKVIIWD--DHQSRCIGEFA---FRSDVRSVKLSRD--RIVVV-LEHKIYVYSFVDLKLLHQ-IETLANLRGLCCLSH  182 (415)
Q Consensus       112 ~~~~i~vwd--~~~~~~~~~~~---~~~~i~~l~~~~~--~~~~~-~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~  182 (415)
                        |.+.-+-  ..+|+.-..-+   ...++.--.|+..  ...++ .|.-..+|.-+ ++.+.. +.... -..++.+..
T Consensus       605 --G~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n-~kLv~spls~ke-v~~~c~f~s  680 (1096)
T KOG1897|consen  605 --GALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSN-GKLVYSPLSLKE-VNHMCPFNS  680 (1096)
T ss_pred             --ceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecC-CcEEEeccchHH-hhhhccccc
Confidence              8776554  44444322221   2334433344332  22223 56666666532 333221 11111 012233333


Q ss_pred             CCCceEEEEeCCccCeEEE---EEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCC-------------cEEEEEEC
Q 014977          183 HSSTSVLACPGLQRGQVRI---EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRG-------------TLIRIFNT  246 (415)
Q Consensus       183 ~~~~~~l~~~g~~dg~v~i---~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg-------------~~I~vwd~  246 (415)
                      +.-...++.+  ..+.+.+   +....-.++++.- ......+++.+....+++.+...             ..++++|-
T Consensus       681 ~a~~d~l~~~--~~~~l~i~tid~iqkl~irtvpl-~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~  757 (1096)
T KOG1897|consen  681 DAYPDSLASA--NGGALTIGTIDEIQKLHIRTVPL-GESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQ  757 (1096)
T ss_pred             ccCCceEEEe--cCCceEEEEecchhhcceeeecC-CCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecC
Confidence            2222234432  3445555   4444444555433 33446677777555554443211             13778887


Q ss_pred             CCCcEEEEEecCCC--cccEEEEEeCCC-CCEEEEEeC----------CCeEEEEEceecc
Q 014977          247 VDGTRLQEVRRGVD--RAEIYSIALSPN-VQWLAVASD----------KGTVHIFSLRVRV  294 (415)
Q Consensus       247 ~~~~~~~~~~~~~~--~~~v~~l~~spd-g~~l~s~s~----------dg~i~vwd~~~~~  294 (415)
                      ++.+.+...+-...  .-.|.++.|..| +.++++|+.          .|.|.||.+...+
T Consensus       758 nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~  818 (1096)
T KOG1897|consen  758 NTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELN  818 (1096)
T ss_pred             CceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCC
Confidence            77766544332111  124566668877 778887763          4788888888743

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=94.08  E-value=6.3  Score=38.45  Aligned_cols=113  Identities=12%  Similarity=0.097  Sum_probs=67.4

Q ss_pred             CCCCCceEEEEEeCCC-----CEEEEEeCCcEEEEEccCC-----ceeEEEecc-CCC--eeEEEEeeeCCeEEEEecCC
Q 014977           41 DVDEIELISVSWNQDY-----GCFAAGTSCGFRIYNCEPF-----KETFRRDLK-SGG--FRIVEMLFRCNILALVGAGD  107 (415)
Q Consensus        41 ~~h~~~V~~l~~sp~g-----~~la~g~d~~v~iw~~~~~-----~~~~~~~~~-~~~--~~~~~~~~~~~~~~l~s~~~  107 (415)
                      -|.-+.|..++|.|-+     .+||+-....|.||.+...     +.......+ ...  .-...+.|+|...+|+.-..
T Consensus        53 iGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~  132 (671)
T PF15390_consen   53 IGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTA  132 (671)
T ss_pred             eeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEec
Confidence            3455679999999853     4777777999999998631     222211110 111  11234568887654443322


Q ss_pred             CCCCCCCeE-EEEECC--CCCEEEEEEccCceeEEEEcCCeEEEE--eCC--eEEEEEc
Q 014977          108 NSQYPPTKV-IIWDDH--QSRCIGEFAFRSDVRSVKLSRDRIVVV--LEH--KIYVYSF  159 (415)
Q Consensus       108 d~~~~~~~i-~vwd~~--~~~~~~~~~~~~~i~~l~~~~~~~~~~--~d~--~i~iwd~  159 (415)
                            ..+ .++++.  +.+....++..+.|.|.+|.+||..++  .+.  .-++||-
T Consensus       133 ------~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~  185 (671)
T PF15390_consen  133 ------RDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS  185 (671)
T ss_pred             ------CceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence                  223 334433  334455566789999999999998776  333  4567874

>PRK13684 Ycf48-like protein; Provisional

Probab=93.97  E-value=5.1  Score=37.03  Aligned_cols=226  Identities=13%  Similarity=0.094  Sum_probs=106.1

Q ss_pred             CCceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEecc---CCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEE
Q 014977           44 EIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLK---SGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD  120 (415)
Q Consensus        44 ~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd  120 (415)
                      ...+++|.|..+..-+++|.++.  ||.....+........   .....+.++.+.++..++ .+..      +.|..-.
T Consensus        45 ~~~l~~v~F~d~~~g~avG~~G~--il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~~~~~-~G~~------g~i~~S~  115 (334)
T PRK13684         45 EANLLDIAFTDPNHGWLVGSNRT--LLETNDGGETWEERSLDLPEENFRLISISFKGDEGWI-VGQP------SLLLHTT  115 (334)
T ss_pred             CCceEEEEEeCCCcEEEEECCCE--EEEEcCCCCCceECccCCcccccceeeeEEcCCcEEE-eCCC------ceEEEEC
Confidence            55799999997777788887654  5555444443333211   122335566666544333 3322      3332221


Q ss_pred             CCCCCEEEEEE----ccCceeE-EEEcCCeEEEE-eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCC
Q 014977          121 DHQSRCIGEFA----FRSDVRS-VKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL  194 (415)
Q Consensus       121 ~~~~~~~~~~~----~~~~i~~-l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  194 (415)
                       +.|+.-..+.    ....... ..+.++..+++ ..+.|..=+ ..++.=..+.... ...+..+...+++.++++ | 
T Consensus       116 -DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~g~~G~i~~S~-DgG~tW~~~~~~~-~g~~~~i~~~~~g~~v~~-g-  190 (334)
T PRK13684        116 -DGGKNWTRIPLSEKLPGSPYLITALGPGTAEMATNVGAIYRTT-DGGKNWEALVEDA-AGVVRNLRRSPDGKYVAV-S-  190 (334)
T ss_pred             -CCCCCCeEccCCcCCCCCceEEEEECCCcceeeeccceEEEEC-CCCCCceeCcCCC-cceEEEEEECCCCeEEEE-e-
Confidence             2222222221    1111122 22233222222 233332211 1122111111111 124455666667766654 4 


Q ss_pred             ccCeEEE-EEcCCcceEEE-ecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecC--CCcccEEEEEeC
Q 014977          195 QRGQVRI-EHFGLNMIKLI-NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRG--VDRAEIYSIALS  270 (415)
Q Consensus       195 ~dg~v~i-~~~~~~~~~~~-~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~--~~~~~v~~l~~s  270 (415)
                      ..|.+.. ++..++.-... ......++++.+.++++.++++ ..|. +++=....|+.-.....+  .....+.++.+.
T Consensus       191 ~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~-~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~  268 (334)
T PRK13684        191 SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQ-IRFNDPDDLESWSKPIIPEITNGYGYLDLAYR  268 (334)
T ss_pred             CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCE-EEEccCCCCCccccccCCccccccceeeEEEc
Confidence            4666665 22222222222 2335678899999999877665 4565 543233444432222211  012357889999


Q ss_pred             CCCCEEEEEeCCCeEE
Q 014977          271 PNVQWLAVASDKGTVH  286 (415)
Q Consensus       271 pdg~~l~s~s~dg~i~  286 (415)
                      +++..++ ++.+|.|.
T Consensus       269 ~~~~~~~-~G~~G~v~  283 (334)
T PRK13684        269 TPGEIWA-GGGNGTLL  283 (334)
T ss_pred             CCCCEEE-EcCCCeEE
Confidence            9877554 55677554

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.86  E-value=1.4  Score=43.80  Aligned_cols=101  Identities=10%  Similarity=0.131  Sum_probs=69.7

Q ss_pred             eCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEee--eCCeEEEEecCCCCCCCCCeEEEEECC-------
Q 014977           53 NQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLF--RCNILALVGAGDNSQYPPTKVIIWDDH-------  122 (415)
Q Consensus        53 sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~s~~~d~~~~~~~i~vwd~~-------  122 (415)
                      +.-++..++.. ...+.|||.......+...+ .....|.++.|  .+++..+.+-|..     +.|.++.-.       
T Consensus        38 ss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~-----~~v~l~~Q~R~dy~~~  111 (631)
T PF12234_consen   38 SSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFP-----HHVLLYTQLRYDYTNK  111 (631)
T ss_pred             cccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcC-----cEEEEEEccchhhhcC
Confidence            33344444444 56799999998777676666 44555555554  5678777777766     888888521       


Q ss_pred             --CCCEEEEEE---c-cCceeEEEEcCCeEEEE-eCCeEEEEEc
Q 014977          123 --QSRCIGEFA---F-RSDVRSVKLSRDRIVVV-LEHKIYVYSF  159 (415)
Q Consensus       123 --~~~~~~~~~---~-~~~i~~l~~~~~~~~~~-~d~~i~iwd~  159 (415)
                        +-..++++.   + ..+|.+..|.++|.+++ .++.+.|+|-
T Consensus       112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk  155 (631)
T PF12234_consen  112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFDK  155 (631)
T ss_pred             CcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEEECC
Confidence              123455544   3 47899999999999998 8999999984

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=93.84  E-value=0.066  Score=45.07  Aligned_cols=94  Identities=16%  Similarity=0.181  Sum_probs=48.9

Q ss_pred             eCCeEEEEEcCCc-eeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEE-ecCc-cceEEEEeCC
Q 014977          150 LEHKIYVYSFVDL-KLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLI-NAHD-SHIACFTLTL  226 (415)
Q Consensus       150 ~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~-~~~~-~~i~~l~~sp  226 (415)
                      .+|.|++|...-. .....+.....  .+.+.-+..+...+.+++..+|.|+.+........-. -.|. .++.....+.
T Consensus        78 ~dg~v~~~n~n~~g~~~d~~~s~~e--~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~  155 (238)
T KOG2444|consen   78 SDGAVYVFNWNLEGAHSDRVCSGEE--SIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVG  155 (238)
T ss_pred             ccceEEEecCCccchHHHhhhcccc--cceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEec
Confidence            7999999987521 11111111122  2334444444444666788999999977665443333 3343 3333333444


Q ss_pred             CCCEEEEE--eCCCcEEEEEEC
Q 014977          227 DGLLLATA--STRGTLIRIFNT  246 (415)
Q Consensus       227 ~g~~l~s~--s~dg~~I~vwd~  246 (415)
                      .+++|+++  |.|.. ++.|++
T Consensus       156 sd~~i~~a~~S~d~~-~k~W~v  176 (238)
T KOG2444|consen  156 SDEFLKIADTSHDRV-LKKWNV  176 (238)
T ss_pred             CCceEEeeccccchh-hhhcch
Confidence            44444444  44554 555554

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=93.82  E-value=3.4  Score=41.69  Aligned_cols=105  Identities=13%  Similarity=0.111  Sum_probs=66.4

Q ss_pred             CCceEEEEeCCccCeEEEEEcCC---------------------cceEEEecCccceEEEEeC--CCCCEEEEEeCCCcE
Q 014977          184 SSTSVLACPGLQRGQVRIEHFGL---------------------NMIKLINAHDSHIACFTLT--LDGLLLATASTRGTL  240 (415)
Q Consensus       184 ~~~~~l~~~g~~dg~v~i~~~~~---------------------~~~~~~~~~~~~i~~l~~s--p~g~~l~s~s~dg~~  240 (415)
                      .....|++ +.+||.|.+|....                     ++...+ .-...++.++++  ...++||+++.... 
T Consensus       112 g~~EVLl~-c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIAVSsNs~~-  188 (717)
T PF08728_consen  112 GGEEVLLL-CTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIAVSSNSQE-  188 (717)
T ss_pred             CCeeEEEE-EecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEEEecCCce-
Confidence            33445544 66899999985421                     011111 124477889998  77788888888777 


Q ss_pred             EEEEECCCC-cEEEEEecCCCcccEEEEEeCCCC-----C-EEEEEeCCCeEEEEEce
Q 014977          241 IRIFNTVDG-TRLQEVRRGVDRAEIYSIALSPNV-----Q-WLAVASDKGTVHIFSLR  291 (415)
Q Consensus       241 I~vwd~~~~-~~~~~~~~~~~~~~v~~l~~spdg-----~-~l~s~s~dg~i~vwd~~  291 (415)
                      |.||-.... +.........+...|-+|+|-++.     . +|++++-.|.+.+|++.
T Consensus       189 VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~  246 (717)
T PF08728_consen  189 VTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK  246 (717)
T ss_pred             EEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence            888765432 111111111244578889887643     2 78889999999999983

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.80  E-value=0.86  Score=47.40  Aligned_cols=143  Identities=9%  Similarity=0.031  Sum_probs=85.1

Q ss_pred             cCceeEEEEcCCeEEEE-----eCCeEEEEEcCCceeee-----EE----eccCCCcceEEEecCCCceEEEEeCCccCe
Q 014977          133 RSDVRSVKLSRDRIVVV-----LEHKIYVYSFVDLKLLH-----QI----ETLANLRGLCCLSHHSSTSVLACPGLQRGQ  198 (415)
Q Consensus       133 ~~~i~~l~~~~~~~~~~-----~d~~i~iwd~~~~~~~~-----~~----~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~  198 (415)
                      .-.|..+...+|+...+     .+..|+.||+++.....     .+    .....++...++.|+|.-....+....|+.
T Consensus       100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls  179 (1405)
T KOG3630|consen  100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS  179 (1405)
T ss_pred             cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence            34566667777754443     34478999986532211     11    112233344555565543333334556777


Q ss_pred             EEEEEcCCc--ceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCC--cccEEEEEeCCCCC
Q 014977          199 VRIEHFGLN--MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVD--RAEIYSIALSPNVQ  274 (415)
Q Consensus       199 v~i~~~~~~--~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~--~~~v~~l~~spdg~  274 (415)
                      |++......  .+..+ .-....++++|+|.|+.++.|-..|+ +.-|.. +++....+.....  ...|.+|+|-....
T Consensus       180 l~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt-~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~e  256 (1405)
T KOG3630|consen  180 LRVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGT-EVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQE  256 (1405)
T ss_pred             hhhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCe-EEEeec-ccceeecccCCCcCCCcceeEEEEeccee
Confidence            777433322  12221 23456789999999999999999999 888853 5665555543211  24799999987777


Q ss_pred             EEEE
Q 014977          275 WLAV  278 (415)
Q Consensus       275 ~l~s  278 (415)
                      +|++
T Consensus       257 flvv  260 (1405)
T KOG3630|consen  257 FLVV  260 (1405)
T ss_pred             EEEE
Confidence            7664

>PRK10115 protease 2; Provisional

Probab=93.71  E-value=9.4  Score=39.19  Aligned_cols=200  Identities=8%  Similarity=-0.019  Sum_probs=97.6

Q ss_pred             eeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE---e-C-----CeEEEEE
Q 014977           88 FRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---L-E-----HKIYVYS  158 (415)
Q Consensus        88 ~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~---~-d-----~~i~iwd  158 (415)
                      ..+..+.++|++..++-+.+...-....|++.|+.+|..+...-.... ..++|.+|+..++   . +     ..|+.++
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~  205 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT  205 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence            445667889998777655433111224789999988864322211111 4589998876555   2 1     3688889


Q ss_pred             cCCc--eeeeEEeccCCCcceEEEec-CCCceEEEEeCCccCeEEEEEc---CCcceEEEecCc-cceEEEEeCCCCCEE
Q 014977          159 FVDL--KLLHQIETLANLRGLCCLSH-HSSTSVLACPGLQRGQVRIEHF---GLNMIKLINAHD-SHIACFTLTLDGLLL  231 (415)
Q Consensus       159 ~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~g~~dg~v~i~~~---~~~~~~~~~~~~-~~i~~l~~sp~g~~l  231 (415)
                      +.++  +....+........+..... +....++.+....++.+.+++.   .... ..+..+. .....+. +..+.++
T Consensus       206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~ly  283 (686)
T PRK10115        206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEP-FVFLPRRKDHEYSLD-HYQHRFY  283 (686)
T ss_pred             CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCc-eEEEECCCCCEEEEE-eCCCEEE
Confidence            8877  33334443333233222332 2222233333334456666552   2222 2222222 2222222 3333333


Q ss_pred             EEEeCCC-c-EEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEce
Q 014977          232 ATASTRG-T-LIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR  291 (415)
Q Consensus       232 ~s~s~dg-~-~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~  291 (415)
                      +....++ . .|...++........+........|..+.+. .+.++++...+|.-+++-+.
T Consensus       284 ~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~  344 (686)
T PRK10115        284 LRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN  344 (686)
T ss_pred             EEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence            3333222 2 1333444421122233332122368888887 33556666777765555554

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.68  E-value=0.4  Score=41.25  Aligned_cols=79  Identities=16%  Similarity=0.181  Sum_probs=50.1

Q ss_pred             eCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCccccc
Q 014977          269 LSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSS  348 (415)
Q Consensus       269 ~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (415)
                      +..++.+|++.+.+|.+++||+.+++....                                +.+....+.   +.. ..
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~--------------------------------~~Si~pll~---~~~-~~   61 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLP--------------------------------PVSIAPLLN---SSP-VS   61 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccC--------------------------------CccHHHHhc---ccc-cc
Confidence            445788999999999999999999886421                                001011110   000 00


Q ss_pred             ccceEEEEeCCCceEEEEecCCCEEEEEEeCCcEEEEEEec
Q 014977          349 EWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dg~~~~~~~~~  389 (415)
                      +    .  .+......+..+.++..++.-++|..|.|+.+.
T Consensus        62 ~----~--~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L   96 (219)
T PF07569_consen   62 D----K--SSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDL   96 (219)
T ss_pred             c----C--CCCCcEEEEEEcCCCCEEEEEeCCCEEEecccc
Confidence            0    0  222344556777778888888899999998876

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=93.61  E-value=0.28  Score=29.56  Aligned_cols=31  Identities=32%  Similarity=0.457  Sum_probs=26.1

Q ss_pred             cEEEEEeCCCC---CEEEEEeCCCeEEEEEceec
Q 014977          263 EIYSIALSPNV---QWLAVASDKGTVHIFSLRVR  293 (415)
Q Consensus       263 ~v~~l~~spdg---~~l~s~s~dg~i~vwd~~~~  293 (415)
                      .|.++.|+|+.   .+|+.+-..|.|.|+|++++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            58899999854   48888888899999999964

It contains a characteristic DLL sequence motif.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=93.60  E-value=10  Score=39.25  Aligned_cols=225  Identities=10%  Similarity=0.007  Sum_probs=111.8

Q ss_pred             CEEEEEe-CCcEEEEEccCCceeEEEeccCCCe------eEEEEeeeC-----------------CeEEEEecCCCCCCC
Q 014977           57 GCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGF------RIVEMLFRC-----------------NILALVGAGDNSQYP  112 (415)
Q Consensus        57 ~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~------~~~~~~~~~-----------------~~~~l~s~~~d~~~~  112 (415)
                      ..|.+++ ++.|.-.|..+++++.+...+....      .+..+.+..                 +..++ .+..|    
T Consensus       195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~-~~T~D----  269 (764)
T TIGR03074       195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRII-LPTSD----  269 (764)
T ss_pred             CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEE-EecCC----
Confidence            3555556 7888888888877777655422111      011122211                 12333 33344    


Q ss_pred             CCeEEEEECCCCCEEEEEEccCcee-------------EEEEcC---CeEEEE--e----------CCeEEEEEcCCcee
Q 014977          113 PTKVIIWDDHQSRCIGEFAFRSDVR-------------SVKLSR---DRIVVV--L----------EHKIYVYSFVDLKL  164 (415)
Q Consensus       113 ~~~i~vwd~~~~~~~~~~~~~~~i~-------------~l~~~~---~~~~~~--~----------d~~i~iwd~~~~~~  164 (415)
                       +.|.-.|.++|+.+..+...+.|.             .+.-.|   ++.+++  .          +|.|+-+|.++|+.
T Consensus       270 -g~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl  348 (764)
T TIGR03074       270 -ARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGAL  348 (764)
T ss_pred             -CeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcE
Confidence             899999999999998775433321             011111   344444  1          57899999999999


Q ss_pred             eeEEeccCCCcceEEEecCCCceEEEEeCCccC-eEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEE
Q 014977          165 LHQIETLANLRGLCCLSHHSSTSVLACPGLQRG-QVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRI  243 (415)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg-~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~v  243 (415)
                      +..+........  ...  ..+.... .|+.+. ...-+|.....+..-.+...+    .+....+.....-..+. |.-
T Consensus       349 ~W~~~~g~p~~~--~~~--~~g~~~~-~gg~n~W~~~s~D~~~glvy~ptGn~~p----d~~g~~r~~~~n~y~~s-lvA  418 (764)
T TIGR03074       349 VWAWDPGNPDPT--APP--APGETYT-RNTPNSWSVASYDEKLGLVYLPMGNQTP----DQWGGDRTPADEKYSSS-LVA  418 (764)
T ss_pred             eeEEecCCCCcc--cCC--CCCCEec-cCCCCccCceEEcCCCCeEEEeCCCccc----cccCCccccCcccccce-EEE
Confidence            988764211100  000  1121111 121111 011122222222111111111    00000000000112345 778


Q ss_pred             EECCCCcEEEEEecCCCcc-------cEEEEEeCC-CCC---EEEEEeCCCeEEEEEceecccCC
Q 014977          244 FNTVDGTRLQEVRRGVDRA-------EIYSIALSP-NVQ---WLAVASDKGTVHIFSLRVRVVGE  297 (415)
Q Consensus       244 wd~~~~~~~~~~~~~~~~~-------~v~~l~~sp-dg~---~l~s~s~dg~i~vwd~~~~~~~~  297 (415)
                      .|.++|+....++...|.-       ...-+.+.. +|+   .++.++.+|.++++|-++++..-
T Consensus       419 LD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~  483 (764)
T TIGR03074       419 LDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIV  483 (764)
T ss_pred             EeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEe
Confidence            8999999888777633321       111122222 563   78899999999999999987643

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=93.39  E-value=2.3  Score=40.52  Aligned_cols=144  Identities=15%  Similarity=0.176  Sum_probs=84.8

Q ss_pred             CCeEEEEe----CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCC------ceEEEEeCCccCeEEEEEc-CCcceEE
Q 014977          143 RDRIVVVL----EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSS------TSVLACPGLQRGQVRIEHF-GLNMIKL  211 (415)
Q Consensus       143 ~~~~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~g~~dg~v~i~~~-~~~~~~~  211 (415)
                      .+..++..    ...++-.|++-|+.+..+..+..  .++.+.|..+      ...|+- -+..+..+|+.+ ++..+..
T Consensus       477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~dd--vvVqy~p~~kf~qmt~eqtlvG-lS~~svFrIDPR~~gNKi~v  553 (776)
T COG5167         477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDD--VVVQYNPYFKFQQMTDEQTLVG-LSDYSVFRIDPRARGNKIKV  553 (776)
T ss_pred             CCcceEEecCCCcccceeeecccceeeeEeecCCc--ceeecCCchhHHhcCccceEEe-ecccceEEecccccCCceee
Confidence            34445552    34677888889999988887776  3455544321      122322 234555666433 3333322


Q ss_pred             Eec----CccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEE
Q 014977          212 INA----HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHI  287 (415)
Q Consensus       212 ~~~----~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v  287 (415)
                      ...    ......+..-..+ -++|+++..|- |++||--.-.....+.+  ....|..+..+.+|++|++.+ ...+.+
T Consensus       554 ~esKdY~tKn~Fss~~tTes-GyIa~as~kGD-irLyDRig~rAKtalP~--lG~aIk~idvta~Gk~ilaTC-k~yllL  628 (776)
T COG5167         554 VESKDYKTKNKFSSGMTTES-GYIAAASRKGD-IRLYDRIGKRAKTALPG--LGDAIKHIDVTANGKHILATC-KNYLLL  628 (776)
T ss_pred             eeehhccccccccccccccC-ceEEEecCCCc-eeeehhhcchhhhcCcc--cccceeeeEeecCCcEEEEee-cceEEE
Confidence            221    1122223332333 48999999999 99999432222233444  556799999999999987666 456888


Q ss_pred             EEceecc
Q 014977          288 FSLRVRV  294 (415)
Q Consensus       288 wd~~~~~  294 (415)
                      -|+.-..
T Consensus       629 ~d~~ik~  635 (776)
T COG5167         629 TDVPIKY  635 (776)
T ss_pred             Eeccccc
Confidence            8876543

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=93.17  E-value=7.8  Score=36.62  Aligned_cols=191  Identities=10%  Similarity=0.051  Sum_probs=85.7

Q ss_pred             EEEEecCCCCCCCCCeEEEEECCCC----CEEEEEEc----c----CceeEEEEcCCeEEEE---------eCCeEEEEE
Q 014977          100 LALVGAGDNSQYPPTKVIIWDDHQS----RCIGEFAF----R----SDVRSVKLSRDRIVVV---------LEHKIYVYS  158 (415)
Q Consensus       100 ~~l~s~~~d~~~~~~~i~vwd~~~~----~~~~~~~~----~----~~i~~l~~~~~~~~~~---------~d~~i~iwd  158 (415)
                      .+++-+-..     +.|.|.|+.+.    +..+.++.    .    .....+..-|+|.+++         .-|.+.++|
T Consensus        89 ~Li~PgL~S-----srIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD  163 (461)
T PF05694_consen   89 YLILPGLRS-----SRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLD  163 (461)
T ss_dssp             EEEEEBTTT-------EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-
T ss_pred             cEEeeeecc-----CcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEc
Confidence            444444444     89999998743    44455541    1    2334455567886655         135688888


Q ss_pred             cCCceeeeEEeccCC-CcceEEEecCCCceEEEEeC-------------------CccCeEEEEEcCCcce-EEEecCc-
Q 014977          159 FVDLKLLHQIETLAN-LRGLCCLSHHSSTSVLACPG-------------------LQRGQVRIEHFGLNMI-KLINAHD-  216 (415)
Q Consensus       159 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~g-------------------~~dg~v~i~~~~~~~~-~~~~~~~-  216 (415)
                      -++.+.....+.... ......+-+.+....++++.                   ....++.+|++..+.. +.+.-.. 
T Consensus       164 ~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~  243 (461)
T PF05694_consen  164 GETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE  243 (461)
T ss_dssp             TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred             CccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence            888877777654322 22334555556656666532                   1346788899887554 4444322 


Q ss_pred             -cceEEEEeC--CCCCEEEEEe-CCCcEEEEE-ECCCCc----EEEEEecCC--------C-------cccEEEEEeCCC
Q 014977          217 -SHIACFTLT--LDGLLLATAS-TRGTLIRIF-NTVDGT----RLQEVRRGV--------D-------RAEIYSIALSPN  272 (415)
Q Consensus       217 -~~i~~l~~s--p~g~~l~s~s-~dg~~I~vw-d~~~~~----~~~~~~~~~--------~-------~~~v~~l~~spd  272 (415)
                       .....|.|.  |+..+=++++ -..+ |..| ....++    .+..+....        -       ..-|++|.+|.|
T Consensus       244 g~~pLEvRflH~P~~~~gFvg~aLss~-i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlD  322 (461)
T PF05694_consen  244 GQMPLEVRFLHDPDANYGFVGCALSSS-IWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLD  322 (461)
T ss_dssp             EEEEEEEEE-SSTT--EEEEEEE--EE-EEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TT
T ss_pred             CCceEEEEecCCCCccceEEEEeccce-EEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccC
Confidence             234456665  4444433333 3444 5444 323442    222232110        0       235799999999


Q ss_pred             CCEEEEEe-CCCeEEEEEceecccC
Q 014977          273 VQWLAVAS-DKGTVHIFSLRVRVVG  296 (415)
Q Consensus       273 g~~l~s~s-~dg~i~vwd~~~~~~~  296 (415)
                      .++|.... ..|.|+.||+......
T Consensus       323 DrfLYvs~W~~GdvrqYDISDP~~P  347 (461)
T PF05694_consen  323 DRFLYVSNWLHGDVRQYDISDPFNP  347 (461)
T ss_dssp             S-EEEEEETTTTEEEEEE-SSTTS-
T ss_pred             CCEEEEEcccCCcEEEEecCCCCCC
Confidence            99998665 5899999999987654

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=93.17  E-value=0.52  Score=28.38  Aligned_cols=31  Identities=26%  Similarity=0.424  Sum_probs=25.2

Q ss_pred             cceEEEEeCCCC---CEEEEEeCCCcEEEEEECCC
Q 014977          217 SHIACFTLTLDG---LLLATASTRGTLIRIFNTVD  248 (415)
Q Consensus       217 ~~i~~l~~sp~g---~~l~s~s~dg~~I~vwd~~~  248 (415)
                      +.+.++.|+|+.   .+|+.+-..+. |.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~-vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGR-VHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCe-EEEEEccc
Confidence            367899999854   48888887888 99999985

It contains a characteristic DLL sequence motif.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=92.99  E-value=6.1  Score=34.89  Aligned_cols=158  Identities=14%  Similarity=0.061  Sum_probs=90.4

Q ss_pred             ceEEEEEeCCCCEEEEEe--CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEE-CC
Q 014977           46 ELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD-DH  122 (415)
Q Consensus        46 ~V~~l~~sp~g~~la~g~--d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd-~~  122 (415)
                      .+.+.+++++++.+|.-.  ++.-.||-.......... +  ....+....|++++.+.+....+     ...+++. ..
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~-~--~g~~l~~PS~d~~g~~W~v~~~~-----~~~~~~~~~~   96 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPV-L--TGGSLTRPSWDPDGWVWTVDDGS-----GGVRVVRDSA   96 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceee-c--cCCccccccccCCCCEEEEEcCC-----CceEEEEecC
Confidence            688999999999887655  555556555443332221 1  22366777788887666554443     5555553 33


Q ss_pred             CCCEE-EEEE---ccCceeEEEEcCCeEEEE--e----CCeEEEEEcC---Cc--eee-eEEecc-CCCcceEEEecCCC
Q 014977          123 QSRCI-GEFA---FRSDVRSVKLSRDRIVVV--L----EHKIYVYSFV---DL--KLL-HQIETL-ANLRGLCCLSHHSS  185 (415)
Q Consensus       123 ~~~~~-~~~~---~~~~i~~l~~~~~~~~~~--~----d~~i~iwd~~---~~--~~~-~~~~~~-~~~~~~~~~~~~~~  185 (415)
                      +++.. ..+.   ....|..+.++|||..++  .    ++.|++--+.   .+  ..+ ..+... .....+..+.|.++
T Consensus        97 ~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~  176 (253)
T PF10647_consen   97 SGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDD  176 (253)
T ss_pred             CCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCC
Confidence            44332 2222   122899999999998887  3    6788877652   23  111 111111 11225667888888


Q ss_pred             ceEEEEeCCccCeEEE-EEcCCcceEE
Q 014977          186 TSVLACPGLQRGQVRI-EHFGLNMIKL  211 (415)
Q Consensus       186 ~~~l~~~g~~dg~v~i-~~~~~~~~~~  211 (415)
                      ..+++.....++.+.. ....+.....
T Consensus       177 ~~L~V~~~~~~~~~~~~v~~dG~~~~~  203 (253)
T PF10647_consen  177 STLVVLGRSAGGPVVRLVSVDGGPSTP  203 (253)
T ss_pred             CEEEEEeCCCCCceeEEEEccCCcccc
Confidence            8777765555554443 3334433333

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=92.95  E-value=2.6  Score=40.93  Aligned_cols=113  Identities=16%  Similarity=0.093  Sum_probs=66.8

Q ss_pred             CceeEEEEcCCe-----EEEE--eCCeEEEEEcC-----CceeeeEEec---cCCCcceEEEecCCCceEEEEeCCccCe
Q 014977          134 SDVRSVKLSRDR-----IVVV--LEHKIYVYSFV-----DLKLLHQIET---LANLRGLCCLSHHSSTSVLACPGLQRGQ  198 (415)
Q Consensus       134 ~~i~~l~~~~~~-----~~~~--~d~~i~iwd~~-----~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~g~~dg~  198 (415)
                      ..|.++.|.|-+     .+++  ....|.||.+.     ..+.+..-..   ..-++-.-...|+|...+|++-...|-.
T Consensus        57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS  136 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS  136 (671)
T ss_pred             ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence            457888998752     3444  68899999984     2333322111   1122223344566666677665545544


Q ss_pred             EEE-EEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEEC
Q 014977          199 VRI-EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNT  246 (415)
Q Consensus       199 v~i-~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~  246 (415)
                      |.- -..+...++.--...+.|.|.+|.+||+.|+++-...-.-+|||-
T Consensus       137 V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~  185 (671)
T PF15390_consen  137 VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS  185 (671)
T ss_pred             EeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence            443 223334444433567889999999999987765544333689984

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=92.62  E-value=7.6  Score=36.44  Aligned_cols=140  Identities=15%  Similarity=0.125  Sum_probs=72.4

Q ss_pred             CceeEEEEcCCeEEEEeC---------------CeEEEEEcCC--cee--eeEEeccCCCcceEEEecCCCceEEEEeCC
Q 014977          134 SDVRSVKLSRDRIVVVLE---------------HKIYVYSFVD--LKL--LHQIETLANLRGLCCLSHHSSTSVLACPGL  194 (415)
Q Consensus       134 ~~i~~l~~~~~~~~~~~d---------------~~i~iwd~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  194 (415)
                      .....|+|.++|++.+.+               +.|.+++-.+  ++.  ...+.....  ....+.+.+++ ++++  .
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~--~p~Gi~~~~~G-lyV~--~   88 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELS--MVTGLAVAVGG-VYVA--T   88 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCC--CccceeEecCC-EEEe--C
Confidence            445677888888776621               2677776432  332  233332222  23445555666 4433  2


Q ss_pred             ccCeEEEEEcCC------cceEEEe---c----CccceEEEEeCCCCCEEEEEeCC-------------------CcEEE
Q 014977          195 QRGQVRIEHFGL------NMIKLIN---A----HDSHIACFTLTLDGLLLATASTR-------------------GTLIR  242 (415)
Q Consensus       195 ~dg~v~i~~~~~------~~~~~~~---~----~~~~i~~l~~sp~g~~l~s~s~d-------------------g~~I~  242 (415)
                      .....++.+..+      +....+.   .    +......++|.|||.+.++-+..                   |. |.
T Consensus        89 ~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~-i~  167 (367)
T TIGR02604        89 PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGG-LF  167 (367)
T ss_pred             CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCce-EE
Confidence            333333433322      1111112   1    13446789999999876654421                   34 55


Q ss_pred             EEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCC
Q 014977          243 IFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK  282 (415)
Q Consensus       243 vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d  282 (415)
                      -+|...++ +..+..+ + .....++|+++|+++++-..+
T Consensus       168 r~~pdg~~-~e~~a~G-~-rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       168 RYNPDGGK-LRVVAHG-F-QNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             EEecCCCe-EEEEecC-c-CCCccceECCCCCEEEEccCC
Confidence            55554433 3333332 2 245789999999987764433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]

Probab=92.61  E-value=5.5  Score=37.17  Aligned_cols=167  Identities=15%  Similarity=0.187  Sum_probs=92.6

Q ss_pred             CeEEEEECCCCCEEEEEE---ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCce---eeeEEeccCCCcceEEEecCC
Q 014977          114 TKVIIWDDHQSRCIGEFA---FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLK---LLHQIETLANLRGLCCLSHHS  184 (415)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~---~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~  184 (415)
                      +.|.+.| ++...+..++   ....|.++.|..|-.+++   ...-+.+.|+.+.+   .+..++.+.   ...-+++-+
T Consensus       406 N~vYilD-e~lnvvGkltGl~~gERIYAvRf~gdv~yiVTfrqtDPlfviDlsNPenPkvlGeLKIPG---fS~YLHpig  481 (603)
T COG4880         406 NAVYILD-ENLNVVGKLTGLAPGERIYAVRFVGDVLYIVTFRQTDPLFVIDLSNPENPKVLGELKIPG---FSEYLHPIG  481 (603)
T ss_pred             ceeEEEc-CCCcEEEEEeccCCCceEEEEEEeCceEEEEEEeccCceEEEEcCCCCCCceeEEEecCC---chhhccccC
Confidence            4566666 5566666666   467899999999988888   45678888986554   444444332   344567777


Q ss_pred             CceEEEEeCCccCeEEE--EEcCC----cceEEEe--cCccc----eEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEE
Q 014977          185 STSVLACPGLQRGQVRI--EHFGL----NMIKLIN--AHDSH----IACFTLTLDGLLLATASTRGTLIRIFNTVDGTRL  252 (415)
Q Consensus       185 ~~~~l~~~g~~dg~v~i--~~~~~----~~~~~~~--~~~~~----i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~  252 (415)
                      .+.+|-. |..+|.++|  ++...    +.+..+.  .--++    -.+..|.|...++..-...+. . |+-++.|..+
T Consensus       482 en~~lGv-G~~~g~vKiSLFdiSdl~~PkEv~~y~l~~~wspvf~dhHAFl~d~~~~ifFlPay~~g-y-if~iedg~kl  558 (603)
T COG4880         482 ENRLLGV-GAYQGGVKISLFDISDLAAPKEVSNYTLSNAWSPVFYDHHAFLYDPEAEIFFLPAYLGG-Y-IFFIEDGSKL  558 (603)
T ss_pred             CCcEEEe-ecccCCceEEEEeccCCCCchhhhheehhhhcchhhhccceeecCCcccEEEecccCcc-E-EEEEecCcee
Confidence            8877765 778899988  44332    1111111  10011    123445555554444333343 2 5666677444


Q ss_pred             EEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEcee
Q 014977          253 QEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV  292 (415)
Q Consensus       253 ~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~  292 (415)
                      ..-..  +...+...-|..|-  |...+.. .+.++|-.+
T Consensus       559 ~k~~e--~k~na~RA~fi~dy--lY~vg~~-ev~~ldens  593 (603)
T COG4880         559 RKRAE--RKLNADRAFFIKDY--LYLVGGN-EVWKLDENS  593 (603)
T ss_pred             eehhh--hcccceeeEEecce--EEEeccc-eeEEeccch
Confidence            33222  55555555565554  4433322 255555433

>PHA02713 hypothetical protein; Provisional

Probab=92.13  E-value=14  Score=36.95  Aligned_cols=64  Identities=9%  Similarity=0.080  Sum_probs=37.8

Q ss_pred             CCCEEEEEeCCC-----cEEEEEECCC-CcE--EEEEecCCCcccEEEEEeCCCCCEEEEEeCCC--eEEEEEceecc
Q 014977          227 DGLLLATASTRG-----TLIRIFNTVD-GTR--LQEVRRGVDRAEIYSIALSPNVQWLAVASDKG--TVHIFSLRVRV  294 (415)
Q Consensus       227 ~g~~l~s~s~dg-----~~I~vwd~~~-~~~--~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg--~i~vwd~~~~~  294 (415)
                      +|++.+.|+.++     ..+..||..+ .+-  +..+..  .......+.+  +|+..++|+.++  .+..||..+++
T Consensus       463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~--~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTES--RLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCc--ccccceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence            566667776542     1167899876 432  223322  1122222233  778888999888  67777777765

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=92.05  E-value=1  Score=38.75  Aligned_cols=68  Identities=19%  Similarity=0.239  Sum_probs=50.1

Q ss_pred             eCCCCCEEEEEeCCCcEEEEEECCCCcEEEEE-------ec-----CCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEce
Q 014977          224 LTLDGLLLATASTRGTLIRIFNTVDGTRLQEV-------RR-----GVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR  291 (415)
Q Consensus       224 ~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~-------~~-----~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~  291 (415)
                      +..++.+|++.+.+|. +++||+.+++.+..-       ..     ......|..+.++.+|.-|++-+ +|..+.|+.+
T Consensus        18 l~~~~~~Ll~iT~~G~-l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~   95 (219)
T PF07569_consen   18 LECNGSYLLAITSSGL-LYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD   95 (219)
T ss_pred             EEeCCCEEEEEeCCCe-EEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence            4457889999999999 999999988754322       10     01345788999999998887766 4678999865


Q ss_pred             ec
Q 014977          292 VR  293 (415)
Q Consensus       292 ~~  293 (415)
                      -+
T Consensus        96 L~   97 (219)
T PF07569_consen   96 LG   97 (219)
T ss_pred             cc
Confidence            54

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=91.39  E-value=6.9  Score=37.48  Aligned_cols=145  Identities=12%  Similarity=0.144  Sum_probs=85.7

Q ss_pred             EeeeCCeEE-EEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCe---------EEEE-eCCeEEEEEcCC
Q 014977           93 MLFRCNILA-LVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDR---------IVVV-LEHKIYVYSFVD  161 (415)
Q Consensus        93 ~~~~~~~~~-l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~---------~~~~-~d~~i~iwd~~~  161 (415)
                      |.+..+..+ +..++..     ..+.-.|++.|+.+.+......+ -+.|.|+.         .++. .+..|.-.|.+-
T Consensus       473 mlh~~dssli~~dg~~~-----~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~  546 (776)
T COG5167         473 MLHDNDSSLIYLDGGER-----DKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRA  546 (776)
T ss_pred             eeecCCcceEEecCCCc-----ccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccc
Confidence            344444433 4444443     77888899999999888854444 56677643         2333 566666666532


Q ss_pred             -ceeeeEEecc--CCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcc-eEEEecCccceEEEEeCCCCCEEEEEeCC
Q 014977          162 -LKLLHQIETL--ANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNM-IKLINAHDSHIACFTLTLDGLLLATASTR  237 (415)
Q Consensus       162 -~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~-~~~~~~~~~~i~~l~~sp~g~~l~s~s~d  237 (415)
                       |..+......  .......+...... .++|+ ++..|.|+++++-+.. ...+.+-...|..|..+.+|+++++.+..
T Consensus       547 ~gNKi~v~esKdY~tKn~Fss~~tTes-GyIa~-as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~  624 (776)
T COG5167         547 RGNKIKVVESKDYKTKNKFSSGMTTES-GYIAA-ASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN  624 (776)
T ss_pred             cCCceeeeeehhccccccccccccccC-ceEEE-ecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc
Confidence             2222221111  00001122222223 36665 6789999997765543 44466778889999999999987766654


Q ss_pred             CcEEEEEECC
Q 014977          238 GTLIRIFNTV  247 (415)
Q Consensus       238 g~~I~vwd~~  247 (415)
                       . +.+-|++
T Consensus       625 -y-llL~d~~  632 (776)
T COG5167         625 -Y-LLLTDVP  632 (776)
T ss_pred             -e-EEEEecc
Confidence             3 6777764

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=91.12  E-value=18  Score=36.25  Aligned_cols=191  Identities=13%  Similarity=0.045  Sum_probs=93.1

Q ss_pred             eEEEEecCCCC-CCCCCeEEEEECCCCCEEEEEE--ccCceeEEEEcCCeEEEE--eC------CeEEEEEcCCceeeeE
Q 014977           99 ILALVGAGDNS-QYPPTKVIIWDDHQSRCIGEFA--FRSDVRSVKLSRDRIVVV--LE------HKIYVYSFVDLKLLHQ  167 (415)
Q Consensus        99 ~~~l~s~~~d~-~~~~~~i~vwd~~~~~~~~~~~--~~~~i~~l~~~~~~~~~~--~d------~~i~iwd~~~~~~~~~  167 (415)
                      +.+++.||..+ ...-..+..+|..+++......  ....-.++++..+..+++  .+      ..+..||..+.+-...
T Consensus       285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~  364 (571)
T KOG4441|consen  285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPV  364 (571)
T ss_pred             CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceecc
Confidence            44555555542 2233678899988875544333  344456667777766666  34      4678888876653321


Q ss_pred             EeccCCCcceEEEecCCCceEEEEeCCccCeEEE-----EEcCCcceEEEecCccceEEE-EeCCCCCEEEEEeCCCc--
Q 014977          168 IETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI-----EHFGLNMIKLINAHDSHIACF-TLTLDGLLLATASTRGT--  239 (415)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i-----~~~~~~~~~~~~~~~~~i~~l-~~sp~g~~l~s~s~dg~--  239 (415)
                      -.... ......++.- +|.+.| .|+.||.-.+     |+.....-............. ...-+|++.++|+.++.  
T Consensus       365 a~M~~-~R~~~~v~~l-~g~iYa-vGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~  441 (571)
T KOG4441|consen  365 APMNT-KRSDFGVAVL-DGKLYA-VGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSN  441 (571)
T ss_pred             CCccC-ccccceeEEE-CCEEEE-EeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCcc
Confidence            11111 1112222222 233444 4667765443     443332211111111111111 11237788888886653  


Q ss_pred             ---EEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCe-----EEEEEceecc
Q 014977          240 ---LIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGT-----VHIFSLRVRV  294 (415)
Q Consensus       240 ---~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~-----i~vwd~~~~~  294 (415)
                         .+..||..+++-...-......... .++. -++.+.+.|+.|+.     |..||..+.+
T Consensus       442 ~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~  502 (571)
T KOG4441|consen  442 CLNSVECYDPETNTWTLIAPMNTRRSGF-GVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQ  502 (571)
T ss_pred             ccceEEEEcCCCCceeecCCcccccccc-eEEE-ECCEEEEECCccCCCccceEEEEcCCCCc
Confidence               2678887776533221110011111 2222 35677788887762     5555555543

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=90.70  E-value=8.5  Score=39.46  Aligned_cols=28  Identities=32%  Similarity=0.549  Sum_probs=23.8

Q ss_pred             cEEEEEeCCCCCEEEEEeCCCeEEEEEce
Q 014977          263 EIYSIALSPNVQWLAVASDKGTVHIFSLR  291 (415)
Q Consensus       263 ~v~~l~~spdg~~l~s~s~dg~i~vwd~~  291 (415)
                      .|..|.++|+|++|+..|..| |.|-.+.
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~-v~V~~LP  113 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRG-VVVLELP  113 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCc-EEEEEec
Confidence            688999999999999999877 6776664

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=90.49  E-value=18  Score=35.29  Aligned_cols=135  Identities=13%  Similarity=0.030  Sum_probs=65.8

Q ss_pred             CeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEecCccc---eEEEEeCCCC
Q 014977          152 HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSH---IACFTLTLDG  228 (415)
Q Consensus       152 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~---i~~l~~sp~g  228 (415)
                      ....++|. .|.....+.........  +...++|.+++..+   ..+...+..++.+.........   =..+..-|+|
T Consensus       128 ~~~~~iD~-~G~Vrw~~~~~~~~~~~--~~~l~nG~ll~~~~---~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~nG  201 (477)
T PF05935_consen  128 SYTYLIDN-NGDVRWYLPLDSGSDNS--FKQLPNGNLLIGSG---NRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELPNG  201 (477)
T ss_dssp             EEEEEEET-TS-EEEEE-GGGT--SS--EEE-TTS-EEEEEB---TEEEEE-TT--EEEEEE--TTEE-B-S-EEE-TTS
T ss_pred             ceEEEECC-CccEEEEEccCccccce--eeEcCCCCEEEecC---CceEEEcCCCCEEEeeecCCcccccccccEECCCC
Confidence            45666663 45554444333221111  44556777776533   6677777778766665433322   2456778999


Q ss_pred             CEEEEEeC-------------CCcEEEEEECCCCcEEEEEecCCCc-------------------------ccEEEEEeC
Q 014977          229 LLLATAST-------------RGTLIRIFNTVDGTRLQEVRRGVDR-------------------------AEIYSIALS  270 (415)
Q Consensus       229 ~~l~s~s~-------------dg~~I~vwd~~~~~~~~~~~~~~~~-------------------------~~v~~l~~s  270 (415)
                      ++|+.+..             ... |..+| .+|+.+..+....|-                         -.++++.+.
T Consensus       202 n~L~l~~~~~~~~~~~~~~~~~D~-Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd  279 (477)
T PF05935_consen  202 NLLILASETKYVDEDKDVDTVEDV-IVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYD  279 (477)
T ss_dssp             -EEEEEEETTEE-TS-EE---S-E-EEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEE
T ss_pred             CEEEEEeecccccCCCCccEecCE-EEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEe
Confidence            98887772             112 55666 677766664321110                         147889998


Q ss_pred             C-CCCEEEEEeCCCeEEEEEceecc
Q 014977          271 P-NVQWLAVASDKGTVHIFSLRVRV  294 (415)
Q Consensus       271 p-dg~~l~s~s~dg~i~vwd~~~~~  294 (415)
                      + ++.+|+++-.-..|...|.++++
T Consensus       280 ~~dd~iivSsR~~s~V~~Id~~t~~  304 (477)
T PF05935_consen  280 PSDDSIIVSSRHQSAVIKIDYRTGK  304 (477)
T ss_dssp             TTTTEEEEEETTT-EEEEEE-TTS-
T ss_pred             CCCCeEEEEcCcceEEEEEECCCCc
Confidence            8 55566555555577777765654

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=90.25  E-value=2.1  Score=25.31  Aligned_cols=32  Identities=19%  Similarity=0.342  Sum_probs=24.7

Q ss_pred             CCCCEEEEEeC-CCcEEEEEECCCCcEEEEEecC
Q 014977          226 LDGLLLATAST-RGTLIRIFNTVDGTRLQEVRRG  258 (415)
Q Consensus       226 p~g~~l~s~s~-dg~~I~vwd~~~~~~~~~~~~~  258 (415)
                      |++++|+++.. ++. |.++|..+++.+..+..+
T Consensus         1 pd~~~lyv~~~~~~~-v~~id~~~~~~~~~i~vg   33 (42)
T TIGR02276         1 PDGTKLYVTNSGSNT-VSVIDTATNKVIATIPVG   33 (42)
T ss_pred             CCCCEEEEEeCCCCE-EEEEECCCCeEEEEEECC
Confidence            57777776664 566 999999999888888763

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=90.16  E-value=0.58  Score=47.37  Aligned_cols=177  Identities=16%  Similarity=0.210  Sum_probs=94.3

Q ss_pred             CeEEEEECCCCCEEEE-EE-ccCceeEEEEcCC-eEEEE-eCCeEEEEEcC--CceeeeEEe-----ccCCCcceEEEec
Q 014977          114 TKVIIWDDHQSRCIGE-FA-FRSDVRSVKLSRD-RIVVV-LEHKIYVYSFV--DLKLLHQIE-----TLANLRGLCCLSH  182 (415)
Q Consensus       114 ~~i~vwd~~~~~~~~~-~~-~~~~i~~l~~~~~-~~~~~-~d~~i~iwd~~--~~~~~~~~~-----~~~~~~~~~~~~~  182 (415)
                      +.+++-+..+...-.+ ++ +.+.+-.+.|... ...+. .-|.+.|||+.  .|+....+.     ....+...+.+.+
T Consensus       111 ~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp  190 (1283)
T KOG1916|consen  111 NGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGRRLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCP  190 (1283)
T ss_pred             hhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHHHHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecc
Confidence            5666666443321111 12 5677888887532 12222 45677788873  344333322     1222223333333


Q ss_pred             C-CCceEEEEeCCccCeEEE--EEcCCcceEEEecCccceEEE-----------EeCCCCCEEEEEeCCCcEEEEEECC-
Q 014977          183 H-SSTSVLACPGLQRGQVRI--EHFGLNMIKLINAHDSHIACF-----------TLTLDGLLLATASTRGTLIRIFNTV-  247 (415)
Q Consensus       183 ~-~~~~~l~~~g~~dg~v~i--~~~~~~~~~~~~~~~~~i~~l-----------~~sp~g~~l~s~s~dg~~I~vwd~~-  247 (415)
                      - .+..++ +.+..+++|++  |+....  ..+.+|...+..+           .++|||..++.+..||. +++|.+. 
T Consensus       191 ~~~~~~~i-c~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~-v~f~Qiyi  266 (1283)
T KOG1916|consen  191 IAVNKVYI-CYGLKGGEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGS-VGFYQIYI  266 (1283)
T ss_pred             ccccccee-eeccCCCceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCc-cceeeeee
Confidence            2 222344 44778889998  544333  3444566554443           36899999999999998 8888653 


Q ss_pred             CC----cEEEEEecCCCc-ccEEEEEeCCCC---------CEEEEEeC-CCeEEEEEceecccC
Q 014977          248 DG----TRLQEVRRGVDR-AEIYSIALSPNV---------QWLAVASD-KGTVHIFSLRVRVVG  296 (415)
Q Consensus       248 ~~----~~~~~~~~~~~~-~~v~~l~~spdg---------~~l~s~s~-dg~i~vwd~~~~~~~  296 (415)
                      +|    .++...+.  |. .+-.|.-++...         .+++++++ ...+++|.-..-+|.
T Consensus       267 ~g~~~~rclhewkp--hd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  267 TGKIVHRCLHEWKP--HDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             eccccHhhhhccCC--CCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            22    34444554  33 222222233221         23445544 346899987776654

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.97  E-value=8.6  Score=36.99  Aligned_cols=78  Identities=17%  Similarity=0.198  Sum_probs=51.6

Q ss_pred             ceEEEEeCCCCCEEEEEeCCCcEEEEE-----E----CCCCcEEEEEe---------cCCCcccEEEEEeCCCC---CEE
Q 014977          218 HIACFTLTLDGLLLATASTRGTLIRIF-----N----TVDGTRLQEVR---------RGVDRAEIYSIALSPNV---QWL  276 (415)
Q Consensus       218 ~i~~l~~sp~g~~l~s~s~dg~~I~vw-----d----~~~~~~~~~~~---------~~~~~~~v~~l~~spdg---~~l  276 (415)
                      .|..+..++.|..++-++.+|. +.++     -    +++|+.....+         .....-.+..++|+|+.   ..|
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi-~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL  183 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGL-MVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL  183 (741)
T ss_pred             EEEEEEecCCCceEEEecCCee-EEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence            4667888999999998888885 3332     1    23443322111         11011256778999976   578


Q ss_pred             EEEeCCCeEEEEEceecccC
Q 014977          277 AVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       277 ~s~s~dg~i~vwd~~~~~~~  296 (415)
                      ..-+.|+.|++|++.+....
T Consensus       184 ~iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  184 VLLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             EEEecCcEEEEEecCCcchh
Confidence            88889999999999887654

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=89.80  E-value=5.8  Score=34.59  Aligned_cols=139  Identities=10%  Similarity=0.015  Sum_probs=74.8

Q ss_pred             eEEEEECCCCCEEEEEE--ccCceeEEEEcCCeEEEE------eCCeEEEEEcCC----ceeeeEEeccCCCcceEEEec
Q 014977          115 KVIIWDDHQSRCIGEFA--FRSDVRSVKLSRDRIVVV------LEHKIYVYSFVD----LKLLHQIETLANLRGLCCLSH  182 (415)
Q Consensus       115 ~i~vwd~~~~~~~~~~~--~~~~i~~l~~~~~~~~~~------~d~~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~  182 (415)
                      .-.+||+.+++... +.  ...-..+-.+.+||+++.      ....+++++..+    ......-..-....+.-....
T Consensus        47 ~s~~yD~~tn~~rp-l~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~  125 (243)
T PF07250_consen   47 HSVEYDPNTNTFRP-LTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATT  125 (243)
T ss_pred             EEEEEecCCCcEEe-ccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceE
Confidence            34688988876532 22  233333445778998888      234577887543    111100000111112223334


Q ss_pred             CCCceEEEEeCCccCeEEEEEcCC--cceEEE--ec-----C-ccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEE
Q 014977          183 HSSTSVLACPGLQRGQVRIEHFGL--NMIKLI--NA-----H-DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRL  252 (415)
Q Consensus       183 ~~~~~~l~~~g~~dg~v~i~~~~~--~~~~~~--~~-----~-~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~  252 (415)
                      -++|+.|+..|....+..+|....  .....+  ..     . ...--.+...|+|++++.+..+..   |||..+.+.+
T Consensus       126 L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~---i~d~~~n~v~  202 (243)
T PF07250_consen  126 LPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSI---IYDYKTNTVV  202 (243)
T ss_pred             CCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcE---EEeCCCCeEE
Confidence            457888888776655555554421  111111  11     0 111224667899999988887644   7898888777


Q ss_pred             EEEec
Q 014977          253 QEVRR  257 (415)
Q Consensus       253 ~~~~~  257 (415)
                      +.+..
T Consensus       203 ~~lP~  207 (243)
T PF07250_consen  203 RTLPD  207 (243)
T ss_pred             eeCCC
Confidence            77664

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=89.67  E-value=18  Score=33.89  Aligned_cols=187  Identities=9%  Similarity=0.099  Sum_probs=100.2

Q ss_pred             CCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcC----CeEE--EE--e---C--CeEEEEEcC--C
Q 014977           97 CNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSR----DRIV--VV--L---E--HKIYVYSFV--D  161 (415)
Q Consensus        97 ~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~----~~~~--~~--~---d--~~i~iwd~~--~  161 (415)
                      |...++++....     +-+.+||+ .|+.++.+. .+.++.+.+-.    ++..  ++  .   +  ..|++|.+.  +
T Consensus        66 p~kSlIigTdK~-----~GL~VYdL-~Gk~lq~~~-~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~  138 (381)
T PF02333_consen   66 PAKSLIIGTDKK-----GGLYVYDL-DGKELQSLP-VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDT  138 (381)
T ss_dssp             GGG-EEEEEETT-----TEEEEEET-TS-EEEEE--SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTT
T ss_pred             cccceEEEEeCC-----CCEEEEcC-CCcEEEeec-CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCC
Confidence            344455555555     88999995 566666664 23444443321    1221  22  2   2  579999774  3


Q ss_pred             ceeeeEEec-------cCCCcceEEEecCC-CceEEEEeCCccCeEEEEEcC----C----cceEEEecCccceEEEEeC
Q 014977          162 LKLLHQIET-------LANLRGLCCLSHHS-STSVLACPGLQRGQVRIEHFG----L----NMIKLINAHDSHIACFTLT  225 (415)
Q Consensus       162 ~~~~~~~~~-------~~~~~~~~~~~~~~-~~~~l~~~g~~dg~v~i~~~~----~----~~~~~~~~~~~~i~~l~~s  225 (415)
                      +. +..+..       ......-+|+..++ ++.+.++....+|.+..|.+.    +    +.++.+.. ...+..|...
T Consensus       139 g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVD  216 (381)
T PF02333_consen  139 GE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVD  216 (381)
T ss_dssp             TE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEE
T ss_pred             Cc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEe
Confidence            33 333321       11222345554443 455666666688887764432    2    34555554 3477888888


Q ss_pred             CCCCEEEEEeCCCcEEEEEECCC--C---cEEEEEecCCCcccEEEEEeC--CCCC--EEEEEeCCCeEEEEEceec
Q 014977          226 LDGLLLATASTRGTLIRIFNTVD--G---TRLQEVRRGVDRAEIYSIALS--PNVQ--WLAVASDKGTVHIFSLRVR  293 (415)
Q Consensus       226 p~g~~l~s~s~dg~~I~vwd~~~--~---~~~~~~~~~~~~~~v~~l~~s--pdg~--~l~s~s~dg~i~vwd~~~~  293 (415)
                      ....+|+.+-++.. |.-|+.+.  +   +.+....+......|-.|++-  .+++  +|++.-.+++..||+.+..
T Consensus       217 De~g~LYvgEE~~G-IW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~  292 (381)
T PF02333_consen  217 DETGRLYVGEEDVG-IWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP  292 (381)
T ss_dssp             TTTTEEEEEETTTE-EEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred             cccCCEEEecCccE-EEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            88889999999988 88888752  1   222222232244567777764  3443  4445555778999998754

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=88.32  E-value=5  Score=33.04  Aligned_cols=31  Identities=19%  Similarity=0.402  Sum_probs=25.3

Q ss_pred             cceEEEEeCCCC------CEEEEEeCCCcEEEEEECCC
Q 014977          217 SHIACFTLTLDG------LLLATASTRGTLIRIFNTVD  248 (415)
Q Consensus       217 ~~i~~l~~sp~g------~~l~s~s~dg~~I~vwd~~~  248 (415)
                      ..+..++|||.|      -+|++...++. |.||.-..
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~-l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGR-LSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCe-EEEEecCC
Confidence            378899999955      37899999999 99998653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=88.11  E-value=31  Score=34.63  Aligned_cols=233  Identities=14%  Similarity=0.075  Sum_probs=107.9

Q ss_pred             eCCCCEEEEEe-C------CcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCC-CCCCCCeEEEEECCCC
Q 014977           53 NQDYGCFAAGT-S------CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDN-SQYPPTKVIIWDDHQS  124 (415)
Q Consensus        53 sp~g~~la~g~-d------~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-~~~~~~~i~vwd~~~~  124 (415)
                      +..+.++++|+ .      ..+..||..+........+. .......++...+ .+++.||.+ ....-..+..||..++
T Consensus       282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~~~-~lYv~GG~~~~~~~l~~ve~YD~~~~  359 (571)
T KOG4441|consen  282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVLNG-KLYVVGGYDSGSDRLSSVERYDPRTN  359 (571)
T ss_pred             CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEECC-EEEEEccccCCCcccceEEEecCCCC
Confidence            33455667777 4      34677887765433333331 2222334444455 445555555 3344578899998887


Q ss_pred             CEEEEEE--ccCceeEEEEcCCeEEEE--eC-----CeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCc
Q 014977          125 RCIGEFA--FRSDVRSVKLSRDRIVVV--LE-----HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ  195 (415)
Q Consensus       125 ~~~~~~~--~~~~i~~l~~~~~~~~~~--~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  195 (415)
                      +....-.  ....-.+++...+-.+++  .|     ..+..||..+.+-...-.... .....+.... ++.+.++ |+.
T Consensus       360 ~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~-~g~iYi~-GG~  436 (571)
T KOG4441|consen  360 QWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVL-GGKLYII-GGG  436 (571)
T ss_pred             ceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeEEEEE-CCEEEEE-cCc
Confidence            7443222  112222333333334444  22     357777776543221111111 1122222222 2344444 554


Q ss_pred             cCeE------EEEEcCCcceEEE---ecCccceEEEEeCCCCCEEEEEeCCCc----EEEEEECCCCcEEEEEecCCCcc
Q 014977          196 RGQV------RIEHFGLNMIKLI---NAHDSHIACFTLTLDGLLLATASTRGT----LIRIFNTVDGTRLQEVRRGVDRA  262 (415)
Q Consensus       196 dg~v------~i~~~~~~~~~~~---~~~~~~i~~l~~sp~g~~l~s~s~dg~----~I~vwd~~~~~~~~~~~~~~~~~  262 (415)
                      ++.-      ..++.....=..+   ..-.......  .-++.+.+.|+.|+.    .|..||..+.+....-.......
T Consensus       437 ~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a--~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs  514 (571)
T KOG4441|consen  437 DGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVA--VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRS  514 (571)
T ss_pred             CCCccccceEEEEcCCCCceeecCCcccccccceEE--EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccc
Confidence            4433      2233333221111   1111111111  236777888887752    26778887766443311111122


Q ss_pred             cEEEEEeCCCCCEEEEEeCCC-----eEEEEEceecc
Q 014977          263 EIYSIALSPNVQWLAVASDKG-----TVHIFSLRVRV  294 (415)
Q Consensus       263 ~v~~l~~spdg~~l~s~s~dg-----~i~vwd~~~~~  294 (415)
                      .+....  -+++..++|+.||     +|..||..+++
T Consensus       515 ~~g~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~d~  549 (571)
T KOG4441|consen  515 AVGVVV--LGGKLYAVGGFDGNNNLNTVECYDPETDT  549 (571)
T ss_pred             cccEEE--ECCEEEEEecccCccccceeEEcCCCCCc
Confidence            222222  2567777888876     56666655544

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.08  E-value=16  Score=36.92  Aligned_cols=75  Identities=19%  Similarity=0.104  Sum_probs=45.0

Q ss_pred             ccCCCCCccCCCCCCceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeE-EEeccCCCeeEEEEeeeCCeEEEEecC
Q 014977           31 SFGHPQTAFSDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETF-RRDLKSGGFRIVEMLFRCNILALVGAG  106 (415)
Q Consensus        31 ~~~~~~~~~~~~h~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~  106 (415)
                      .++..+....-.|. .+-.+.|+.+..+|++.-+|.++||++-...... ...+......|....+..+|.++.+.+
T Consensus        71 ~sG~lL~~~~w~~~-~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt~~  146 (829)
T KOG2280|consen   71 ISGQLLGRILWKHG-ELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAVLTVS  146 (829)
T ss_pred             ccccchHHHHhcCC-CeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceEEEecC
Confidence            34444444444455 7889999999888888779999999986421111 111122333455555555666665544

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=87.97  E-value=1.6  Score=25.50  Aligned_cols=29  Identities=21%  Similarity=0.205  Sum_probs=20.8

Q ss_pred             CCCCceEEEEEeCCCCEEEEEe--C--CcEEEE
Q 014977           42 VDEIELISVSWNQDYGCFAAGT--S--CGFRIY   70 (415)
Q Consensus        42 ~h~~~V~~l~~sp~g~~la~g~--d--~~v~iw   70 (415)
                      .....-....|+|||+.|+..+  +  |...||
T Consensus         6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            3445678899999999999777  5  666665

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=87.83  E-value=26  Score=33.56  Aligned_cols=30  Identities=20%  Similarity=0.482  Sum_probs=25.4

Q ss_pred             cEEEEEeCCCCCEEEEEeCCCeEEEEEcee
Q 014977          263 EIYSIALSPNVQWLAVASDKGTVHIFSLRV  292 (415)
Q Consensus       263 ~v~~l~~spdg~~l~s~s~dg~i~vwd~~~  292 (415)
                      .|..+...+..+.|++.+.+|.|.+|++..
T Consensus       191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            489999999889999999999999999985

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=87.57  E-value=26  Score=33.23  Aligned_cols=102  Identities=15%  Similarity=0.131  Sum_probs=57.0

Q ss_pred             EecCCCceEEEEeCCccCeEEE-EEcCCcc-eEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCc-----EE
Q 014977          180 LSHHSSTSVLACPGLQRGQVRI-EHFGLNM-IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT-----RL  252 (415)
Q Consensus       180 ~~~~~~~~~l~~~g~~dg~v~i-~~~~~~~-~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~-----~~  252 (415)
                      +...+++.++++ | ..|.+.. |+..... ...-......+..+.+.++|.+++++ ..|. + ++....++     ..
T Consensus       244 v~~~~dG~~~~v-g-~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~-l-~~S~d~G~~~~~~~f  318 (398)
T PLN00033        244 VNRSPDGDYVAV-S-SRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGG-L-YVSKGTGLTEEDFDF  318 (398)
T ss_pred             EEEcCCCCEEEE-E-CCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCce-E-EEecCCCCcccccce
Confidence            344556666655 3 4566665 4333221 22222335678899999999877665 4565 3 44444554     22


Q ss_pred             EEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEE
Q 014977          253 QEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHI  287 (415)
Q Consensus       253 ~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v  287 (415)
                      ..+........+.++.|.+++..+ .++..|.+..
T Consensus       319 ~~~~~~~~~~~l~~v~~~~d~~~~-a~G~~G~v~~  352 (398)
T PLN00033        319 EEADIKSRGFGILDVGYRSKKEAW-AAGGSGILLR  352 (398)
T ss_pred             eecccCCCCcceEEEEEcCCCcEE-EEECCCcEEE
Confidence            333321122358899999887755 4556785544

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=87.42  E-value=0.095  Score=49.11  Aligned_cols=142  Identities=19%  Similarity=0.195  Sum_probs=90.4

Q ss_pred             CeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE----eCCeEEEEEcCCc
Q 014977           87 GFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDL  162 (415)
Q Consensus        87 ~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~  162 (415)
                      -.......|.+.+.-++.+..+     ..+..|| +.++.+.+...++...+++|..++..++    ..+.+++||+.+.
T Consensus        34 lv~pi~~~w~~e~~nlavaca~-----tiv~~YD-~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~e  107 (615)
T KOG2247|consen   34 LVGPIIHRWRPEGHNLAVACAN-----TIVIYYD-KAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSE  107 (615)
T ss_pred             ccccceeeEecCCCceehhhhh-----hHHHhhh-hhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhh
Confidence            3344556666655545555544     7788888 6677777777778888899988776655    6899999998653


Q ss_pred             eeeeEEec-cCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEec-CccceEEEEeCCCCCEEEEEeCCCc
Q 014977          163 KLLHQIET-LANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINA-HDSHIACFTLTLDGLLLATASTRGT  239 (415)
Q Consensus       163 ~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~-~~~~i~~l~~sp~g~~l~s~s~dg~  239 (415)
                      . .++++. .......  +.|++....++. |...|.+.|+...........+ |...+.++++.+.+. .+.++.|..
T Consensus       108 y-tqqLE~gg~~s~sl--l~wsKg~~el~i-g~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~  181 (615)
T KOG2247|consen  108 Y-TQQLESGGTSSKSL--LAWSKGTPELVI-GNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNT  181 (615)
T ss_pred             h-HHHHhccCcchHHH--HhhccCCccccc-cccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHHH
Confidence            2 222221 1111122  455555556655 6678888886655443333344 889999999999874 445555544

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=87.41  E-value=5.1  Score=32.99  Aligned_cols=31  Identities=26%  Similarity=0.352  Sum_probs=26.3

Q ss_pred             cEEEEEeCCCC------CEEEEEeCCCeEEEEEceec
Q 014977          263 EIYSIALSPNV------QWLAVASDKGTVHIFSLRVR  293 (415)
Q Consensus       263 ~v~~l~~spdg------~~l~s~s~dg~i~vwd~~~~  293 (415)
                      .+.+++|||-|      .+|++.+.++.|.||.-...
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~  123 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN  123 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence            68899999954      47999999999999997754

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.28  E-value=19  Score=38.68  Aligned_cols=142  Identities=18%  Similarity=0.268  Sum_probs=82.0

Q ss_pred             EEeCCeEEEEEcCCceeeeEEeccCCCcceEEE-ecCCC-----ceEEEEeCCccCeEEEE----EcCCcc------eEE
Q 014977          148 VVLEHKIYVYSFVDLKLLHQIETLANLRGLCCL-SHHSS-----TSVLACPGLQRGQVRIE----HFGLNM------IKL  211 (415)
Q Consensus       148 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~l~~~g~~dg~v~i~----~~~~~~------~~~  211 (415)
                      +..|+.+.+|+.+++.....+.+-.+.+--+.+ .|.|.     =+++.+.+ ..-.|.+.    +.....      ...
T Consensus        95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvva-T~~ei~ilgV~~~~~~~~~~~f~~~~~  173 (1311)
T KOG1900|consen   95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVA-TPVEIVILGVSFDEFTGELSIFNTSFK  173 (1311)
T ss_pred             EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEec-ccceEEEEEEEeccccCccccccccee
Confidence            337999999999887777666655543322222 22221     11222222 12233331    111111      122


Q ss_pred             EecCccceEEEEeCCCCCEEEEEeCCCcEEE--EEECCCC---c-E----------------EEEEecCCCcccEEEEEe
Q 014977          212 INAHDSHIACFTLTLDGLLLATASTRGTLIR--IFNTVDG---T-R----------------LQEVRRGVDRAEIYSIAL  269 (415)
Q Consensus       212 ~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~--vwd~~~~---~-~----------------~~~~~~~~~~~~v~~l~~  269 (415)
                      +......|.++....+|+.+++|- ||. |+  +|...+|   + +                +..+. +.+..+|..++.
T Consensus       174 i~~dg~~V~~I~~t~nGRIF~~G~-dg~-lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~-~~~~dpI~qi~I  250 (1311)
T KOG1900|consen  174 ISVDGVSVNCITYTENGRIFFAGR-DGN-LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVP-GSSKDPIRQITI  250 (1311)
T ss_pred             eecCCceEEEEEeccCCcEEEeec-CCC-EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCC-CCCCCcceeeEe
Confidence            334466788999888998777655 455 43  2222222   1 0                11122 235678999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEEceec
Q 014977          270 SPNVQWLAVASDKGTVHIFSLRVR  293 (415)
Q Consensus       270 spdg~~l~s~s~dg~i~vwd~~~~  293 (415)
                      ...-..|.+-+..|+|.+|++...
T Consensus       251 D~SR~IlY~lsek~~v~~Y~i~~~  274 (1311)
T KOG1900|consen  251 DNSRNILYVLSEKGTVSAYDIGGN  274 (1311)
T ss_pred             ccccceeeeeccCceEEEEEccCC
Confidence            988889999999999999999874

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=87.09  E-value=27  Score=32.81  Aligned_cols=149  Identities=12%  Similarity=0.033  Sum_probs=74.0

Q ss_pred             eEEEEeeeCCeEEEEecCCCC------CCCCC-eEEEEECCC--CCE--EEEEE-ccCceeEEEEcCCeEEEEeCCeEEE
Q 014977           89 RIVEMLFRCNILALVGAGDNS------QYPPT-KVIIWDDHQ--SRC--IGEFA-FRSDVRSVKLSRDRIVVVLEHKIYV  156 (415)
Q Consensus        89 ~~~~~~~~~~~~~l~s~~~d~------~~~~~-~i~vwd~~~--~~~--~~~~~-~~~~i~~l~~~~~~~~~~~d~~i~i  156 (415)
                      ....++|.+++.++++...+-      ....+ .|.+++..+  |+.  ...+. .-.....|++.+++.+++....|..
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~GlyV~~~~~i~~   94 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGGVYVATPPDILF   94 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCCEEEeCCCeEEE
Confidence            356677888887777643110      00013 677776433  332  22332 2345688999999955555555655


Q ss_pred             E-EcCC-c----eeeeEEeccCC-----CcceEEEecCCCceEEEEeCCcc------------------CeEEEEEcCCc
Q 014977          157 Y-SFVD-L----KLLHQIETLAN-----LRGLCCLSHHSSTSVLACPGLQR------------------GQVRIEHFGLN  207 (415)
Q Consensus       157 w-d~~~-~----~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~g~~d------------------g~v~i~~~~~~  207 (415)
                      | |... +    +....+..-..     ......+.+.+++.+.++.|+..                  |.|.-.+..+.
T Consensus        95 ~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~  174 (367)
T TIGR02604        95 LRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGG  174 (367)
T ss_pred             EeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCC
Confidence            5 4321 1    21111221111     11244566666776666555321                  22222333333


Q ss_pred             ceEEEecCccceEEEEeCCCCCEEEEEeCC
Q 014977          208 MIKLINAHDSHIACFTLTLDGLLLATASTR  237 (415)
Q Consensus       208 ~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d  237 (415)
                      ....+...-.....++|+++|+++++-..+
T Consensus       175 ~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       175 KLRVVAHGFQNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             eEEEEecCcCCCccceECCCCCEEEEccCC
Confidence            333333223345678899999887664433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=86.37  E-value=46  Score=34.83  Aligned_cols=76  Identities=14%  Similarity=0.240  Sum_probs=48.6

Q ss_pred             cCccceEEEEeC---C----CCCEEEEEeCCCcEEEEEEC------CC---------CcEEEEEecCC-CcccEEEEEeC
Q 014977          214 AHDSHIACFTLT---L----DGLLLATASTRGTLIRIFNT------VD---------GTRLQEVRRGV-DRAEIYSIALS  270 (415)
Q Consensus       214 ~~~~~i~~l~~s---p----~g~~l~s~s~dg~~I~vwd~------~~---------~~~~~~~~~~~-~~~~v~~l~~s  270 (415)
                      ....+|..|+|.   .    ..++|++-... . +.|+..      ..         ..++..+.... ...+..+++|+
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~-s-t~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~Fn  154 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAVRTET-S-TTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFN  154 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEEEcCC-E-EEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEec
Confidence            456788888887   2    22466655543 4 666661      11         12344444210 12367889999


Q ss_pred             C-CCCEEEEEeCCCeEEEEEce
Q 014977          271 P-NVQWLAVASDKGTVHIFSLR  291 (415)
Q Consensus       271 p-dg~~l~s~s~dg~i~vwd~~  291 (415)
                      | +.+.||.....|...||++.
T Consensus       155 P~~~~q~AiVD~~G~Wsvw~i~  176 (765)
T PF10214_consen  155 PWDQRQFAIVDEKGNWSVWDIK  176 (765)
T ss_pred             cCccceEEEEeccCcEEEEEec
Confidence            8 45689999999999999993

These proteins are found in fungi.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=86.19  E-value=14  Score=37.14  Aligned_cols=32  Identities=9%  Similarity=0.144  Sum_probs=27.5

Q ss_pred             CCCceEEEEEeCCCCEEEEEe-CCcEEEEEccC
Q 014977           43 DEIELISVSWNQDYGCFAAGT-SCGFRIYNCEP   74 (415)
Q Consensus        43 h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~   74 (415)
                      ....++++.-+|.|+.++.+. ||.|++|++.+
T Consensus        13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~   45 (1636)
T KOG3616|consen   13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIP   45 (1636)
T ss_pred             ccceeeeeeecCCCceEEEEecCCcEEEEeecc
Confidence            345678888899999999999 99999999865

>PRK13684 Ycf48-like protein; Provisional

Probab=86.13  E-value=28  Score=32.16  Aligned_cols=149  Identities=13%  Similarity=0.121  Sum_probs=79.0

Q ss_pred             cCceeEEEEcCCeEEEE--eCCeEEEEEcCCc-eeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEE-EcCCcc
Q 014977          133 RSDVRSVKLSRDRIVVV--LEHKIYVYSFVDL-KLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIE-HFGLNM  208 (415)
Q Consensus       133 ~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~-~~~~~~  208 (415)
                      ...+.++.+.+++.+++  ..|.++.- ...+ +.-..+.. .....+..+...+++..+++ | ..|.+.+- ...+..
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s-~~~gg~tW~~~~~-~~~~~l~~i~~~~~g~~~~v-g-~~G~~~~~s~d~G~s  247 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSSRGNFYST-WEPGQTAWTPHQR-NSSRRLQSMGFQPDGNLWML-A-RGGQIRFNDPDDLES  247 (334)
T ss_pred             cceEEEEEECCCCeEEEEeCCceEEEE-cCCCCCeEEEeeC-CCcccceeeeEcCCCCEEEE-e-cCCEEEEccCCCCCc
Confidence            45788899999988777  35544432 2222 21222221 11224455555556666554 4 46777652 222222


Q ss_pred             eEEEec----CccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEec-CCCcccEEEEEeCCCCCEEEEEeCCC
Q 014977          209 IKLINA----HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR-GVDRAEIYSIALSPNVQWLAVASDKG  283 (415)
Q Consensus       209 ~~~~~~----~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~-~~~~~~v~~l~~spdg~~l~s~s~dg  283 (415)
                      -.....    ....+..+.+.+++..+++ +.+|. |. .....|+.-..... ..-......+.|..+++.++ .+..|
T Consensus       248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~-v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G  323 (334)
T PRK13684        248 WSKPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGT-LL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRG  323 (334)
T ss_pred             cccccCCccccccceeeEEEcCCCCEEEE-cCCCe-EE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCc
Confidence            111111    1235778899998876554 45665 43 44444554333321 11223577888876666655 56688


Q ss_pred             eEEEEE
Q 014977          284 TVHIFS  289 (415)
Q Consensus       284 ~i~vwd  289 (415)
                      .|.-|+
T Consensus       324 ~il~~~  329 (334)
T PRK13684        324 VLLRYV  329 (334)
T ss_pred             eEEEec
Confidence            777665

>PHA02713 hypothetical protein; Provisional

Probab=85.88  E-value=40  Score=33.72  Aligned_cols=25  Identities=12%  Similarity=0.036  Sum_probs=19.4

Q ss_pred             CCCEEEEEeCCC--cEEEEEECCCCcEE
Q 014977          227 DGLLLATASTRG--TLIRIFNTVDGTRL  252 (415)
Q Consensus       227 ~g~~l~s~s~dg--~~I~vwd~~~~~~~  252 (415)
                      +|++.++|+.++  . +..||..+.+-.
T Consensus       512 ~~~iyv~Gg~~~~~~-~e~yd~~~~~W~  538 (557)
T PHA02713        512 DNTIMMLHCYESYML-QDTFNVYTYEWN  538 (557)
T ss_pred             CCEEEEEeeecceee-hhhcCccccccc
Confidence            778888998888  6 778888776644

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=84.79  E-value=29  Score=31.06  Aligned_cols=190  Identities=9%  Similarity=0.036  Sum_probs=105.0

Q ss_pred             eEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEE---EEccCceeEEEEcCCeEEEE-eCCeEEEEEcCCce-
Q 014977           89 RIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGE---FAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLK-  163 (415)
Q Consensus        89 ~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~---~~~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~-  163 (415)
                      .+.++.++.+..+++-.+       .-+++.|+.+-..-..   +...+--.++..+.+-.+++ .+.-..+.|+.+.. 
T Consensus        88 l~~Dv~vse~yvyvad~s-------sGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpss  160 (370)
T COG5276          88 LFADVRVSEEYVYVADWS-------SGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSS  160 (370)
T ss_pred             hhheeEecccEEEEEcCC-------CceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCC
Confidence            344566677776666543       6789999776543333   33346667777777777777 57777788886543 


Q ss_pred             --eeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEecC---ccceEEEEeCCCCCEEEEEeCCC
Q 014977          164 --LLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAH---DSHIACFTLTLDGLLLATASTRG  238 (415)
Q Consensus       164 --~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~---~~~i~~l~~sp~g~~l~s~s~dg  238 (415)
                        ....+.....  ....++.+++..+.+   ..|+-+.+-+.....--.+.+|   ...+.++..+++-.+++...+  
T Consensus       161 P~lagrya~~~~--d~~~v~ISGn~AYvA---~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~e--  233 (370)
T COG5276         161 PQLAGRYALPGG--DTHDVAISGNYAYVA---WRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDE--  233 (370)
T ss_pred             ceeeeeeccCCC--CceeEEEecCeEEEE---EeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEccc--
Confidence              2223322222  113344444443433   2556666644443332233332   336788888877766665543  


Q ss_pred             cEEEEEECCCCcEEEEEecCCCcccEEEE-EeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977          239 TLIRIFNTVDGTRLQEVRRGVDRAEIYSI-ALSPNVQWLAVASDKGTVHIFSLRVRV  294 (415)
Q Consensus       239 ~~I~vwd~~~~~~~~~~~~~~~~~~v~~l-~~spdg~~l~s~s~dg~i~vwd~~~~~  294 (415)
                      . +.+-|..+.+....+-.. ....+.++ .+.-.+++...+..+.-+-+-|+.+..
T Consensus       234 g-vlivd~s~~ssp~~~gsy-et~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~  288 (370)
T COG5276         234 G-VLIVDVSGPSSPTVFGSY-ETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPP  288 (370)
T ss_pred             c-eEEEecCCCCCceEeecc-ccCCcccccceecccceeeeeccccCceeEeccCCC
Confidence            3 778887665544333321 12222222 233345666666666667788877765

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.77  E-value=9.2  Score=36.12  Aligned_cols=102  Identities=14%  Similarity=0.171  Sum_probs=66.2

Q ss_pred             CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeE--EEeccCCCeeEEEEeeeCCe-EEEEecCCCCCCCCCe
Q 014977           40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETF--RRDLKSGGFRIVEMLFRCNI-LALVGAGDNSQYPPTK  115 (415)
Q Consensus        40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~~~~~~  115 (415)
                      ....+++|.++.|++|.+.||+-. +..|.+++..+.+...  ....+.....+..+.|..+- .++++.        ..
T Consensus        62 dm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~--------~G  133 (657)
T KOG2377|consen   62 DMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIAFITD--------QG  133 (657)
T ss_pred             eecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCeeEEEEec--------CC
Confidence            344567999999999999999988 9999999985433222  22223455668888888763 333332        34


Q ss_pred             EEEEECCCC-CEEEEEE-ccCceeEEEEcCCeEEEE
Q 014977          116 VIIWDDHQS-RCIGEFA-FRSDVRSVKLSRDRIVVV  149 (415)
Q Consensus       116 i~vwd~~~~-~~~~~~~-~~~~i~~l~~~~~~~~~~  149 (415)
                      +.+|..... +.++..+ +...|+-..|.++...+.
T Consensus       134 ~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~L  169 (657)
T KOG2377|consen  134 IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVIL  169 (657)
T ss_pred             eEEEEEchhhhhhhhhhhcccCccEEEEccccceEe
Confidence            555553322 2233333 677788888888776665

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=84.76  E-value=41  Score=32.87  Aligned_cols=191  Identities=10%  Similarity=0.032  Sum_probs=88.1

Q ss_pred             CCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEcc-CceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEeccCCC
Q 014977           97 CNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFR-SDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANL  174 (415)
Q Consensus        97 ~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~-~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~  174 (415)
                      .++.+++.....  -......+.| .+|.....+... .....+...++|.+++ ....++.+|+- |+.+..+......
T Consensus       113 ~~gl~~~~~~~~--~~~~~~~~iD-~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~~~~~e~D~~-G~v~~~~~l~~~~  188 (477)
T PF05935_consen  113 EDGLYFVNGNDW--DSSSYTYLID-NNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSGNRLYEIDLL-GKVIWEYDLPGGY  188 (477)
T ss_dssp             TT-EEEEEETT----BEEEEEEEE-TTS-EEEEE-GGGT--SSEEE-TTS-EEEEEBTEEEEE-TT---EEEEEE--TTE
T ss_pred             CCcEEEEeCCCC--CCCceEEEEC-CCccEEEEEccCccccceeeEcCCCCEEEecCCceEEEcCC-CCEEEeeecCCcc
Confidence            356677766110  0116777777 667777666632 2222267788998888 67888888874 5665555433321


Q ss_pred             -cceEEEecCCCceEEEEeCC-------------ccCeEEEEEcCCcceEEEec--C-----------------------
Q 014977          175 -RGLCCLSHHSSTSVLACPGL-------------QRGQVRIEHFGLNMIKLINA--H-----------------------  215 (415)
Q Consensus       175 -~~~~~~~~~~~~~~l~~~g~-------------~dg~v~i~~~~~~~~~~~~~--~-----------------------  215 (415)
                       ..-..+.+.++|.+|+.+..             .|..+.|+ .+++.+..+..  |                       
T Consensus       189 ~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~  267 (477)
T PF05935_consen  189 YDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGG  267 (477)
T ss_dssp             E-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTT
T ss_pred             cccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCC
Confidence             01123344455555554330             23323333 44443333210  0                       


Q ss_pred             --ccceEEEEeCC-CCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCC-c----ccEE-E--------------EEeCCC
Q 014977          216 --DSHIACFTLTL-DGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVD-R----AEIY-S--------------IALSPN  272 (415)
Q Consensus       216 --~~~i~~l~~sp-~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~-~----~~v~-~--------------l~~spd  272 (415)
                        -.-++++.+.+ ++.+|+++-.-.. |...|.++++....+-.+.. .    ..+. -              ..| +-
T Consensus       268 ~DW~H~Nsi~yd~~dd~iivSsR~~s~-V~~Id~~t~~i~Wilg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~~-~~  345 (477)
T PF05935_consen  268 RDWLHINSIDYDPSDDSIIVSSRHQSA-VIKIDYRTGKIKWILGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFDW-FW  345 (477)
T ss_dssp             SBS--EEEEEEETTTTEEEEEETTT-E-EEEEE-TTS-EEEEES-STT--TTTGGGB-EEB-TTS-B-EBSSSS-----S
T ss_pred             CCccccCccEEeCCCCeEEEEcCcceE-EEEEECCCCcEEEEeCCCCCCCcccchheeeeeccCCceeeccCCCCcc-cc
Confidence              02378899988 5555665555557 88999888888776654210 0    0000 0              111 23


Q ss_pred             CCEEEEEeCCC---eEEEEEceecc
Q 014977          273 VQWLAVASDKG---TVHIFSLRVRV  294 (415)
Q Consensus       273 g~~l~s~s~dg---~i~vwd~~~~~  294 (415)
                      |++-+.--.+|   .|.+||=....
T Consensus       346 gQH~~~~~~~g~~~~l~vFDNg~~r  370 (477)
T PF05935_consen  346 GQHTAHLIPDGPQGNLLVFDNGNGR  370 (477)
T ss_dssp             S-EEEEE-TTS---SEEEEE--TTG
T ss_pred             cccceEEcCCCCeEEEEEEECCCCC
Confidence            56666667777   89999866544

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=84.09  E-value=45  Score=32.75  Aligned_cols=236  Identities=11%  Similarity=0.070  Sum_probs=107.0

Q ss_pred             CCCceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECC
Q 014977           43 DEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH  122 (415)
Q Consensus        43 h~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~  122 (415)
                      -..+|.++.+...|. +-+|++..+..||..+.+. +..........+..+.-+-++.+.++..       .-|.+.+.+
T Consensus       163 ~d~~V~aLv~D~~g~-lWvgT~dGL~~fd~~~gka-lql~s~~~dk~I~al~~d~qg~LWVGTd-------qGv~~~e~~  233 (671)
T COG3292         163 KDTPVVALVFDANGR-LWVGTPDGLSYFDAGRGKA-LQLASPPLDKAINALIADVQGRLWVGTD-------QGVYLQEAE  233 (671)
T ss_pred             cCccceeeeeeccCc-EEEecCCcceEEccccceE-EEcCCCcchhhHHHHHHHhcCcEEEEec-------cceEEEchh
Confidence            456788888888875 4556655566677665332 3222212224455555555555555533       456666644


Q ss_pred             CCCEEEEEE--ccCceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEE-eccCCCcceEEEecCCCceEEEEeCCccCe
Q 014977          123 QSRCIGEFA--FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQI-ETLANLRGLCCLSHHSSTSVLACPGLQRGQ  198 (415)
Q Consensus       123 ~~~~~~~~~--~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~  198 (415)
                      ..+......  ....|..+.-..+|.+-+ .++.+-.+.+......... +.+....++..+.-+.++.+-  .+..++.
T Consensus       234 G~~~sn~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGsLW--v~t~~gi  311 (671)
T COG3292         234 GWRASNWGPMLPSGNILLLVQDAQGELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGSLW--VGTYGGI  311 (671)
T ss_pred             hccccccCCCCcchheeeeecccCCCEEEeecccceeEecCCCCccccccccCCccccccceeeccCCCEe--eeccCce
Confidence            311111111  234444444444444444 4443433444333222211 222222244556666666554  3556666


Q ss_pred             EEEEEcCCcceEEEecCcc-ceEEEEeCC--CCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCE
Q 014977          199 VRIEHFGLNMIKLINAHDS-HIACFTLTL--DGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQW  275 (415)
Q Consensus       199 v~i~~~~~~~~~~~~~~~~-~i~~l~~sp--~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~  275 (415)
                      +++-...-.....+....+ .+...+.+|  .+..+--...-|. +.+-+-.+|..+.....- ....|+.+.+..+|. 
T Consensus       312 v~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~-L~van~stG~~v~sv~q~-Rg~nit~~~~d~~g~-  388 (671)
T COG3292         312 VRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGE-LMVANGSTGELVRSVHQL-RGMNITTTLEDSRGR-  388 (671)
T ss_pred             EEEecchhhheeeeecCCCchhhhhccCchhcccceeeccccce-EEEecCCCCcEEEEeeec-cccccchhhhccCCc-
Confidence            6663322222222222211 111122222  1112222222233 444555566655543321 223566667766554 


Q ss_pred             EEEEeCCCeEEEEEcee
Q 014977          276 LAVASDKGTVHIFSLRV  292 (415)
Q Consensus       276 l~s~s~dg~i~vwd~~~  292 (415)
                      +-.++..+-+..|+.++
T Consensus       389 lWlgs~q~GLsrl~n~n  405 (671)
T COG3292         389 LWLGSMQNGLSRLDNKN  405 (671)
T ss_pred             EEEEecccchhhhccCC
Confidence            44555553366777665

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=83.66  E-value=4.7  Score=40.18  Aligned_cols=33  Identities=27%  Similarity=0.283  Sum_probs=26.2

Q ss_pred             cEEEEEeCC----CCCEEEEEeCCCeEEEEEceeccc
Q 014977          263 EIYSIALSP----NVQWLAVASDKGTVHIFSLRVRVV  295 (415)
Q Consensus       263 ~v~~l~~sp----dg~~l~s~s~dg~i~vwd~~~~~~  295 (415)
                      .+..++++.    +..+|++.+.|+++++||+.++++
T Consensus       216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~  252 (547)
T PF11715_consen  216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQC  252 (547)
T ss_dssp             -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCE
T ss_pred             ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeE
Confidence            455566666    678999999999999999999997

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=83.56  E-value=34  Score=30.88  Aligned_cols=165  Identities=12%  Similarity=0.142  Sum_probs=86.8

Q ss_pred             CeEEEEECCCCCEEEEEEc-------cCceeEEEEcCC------eE-EEE--eCCeEEEEEcCCceeeeEEeccCCCc--
Q 014977          114 TKVIIWDDHQSRCIGEFAF-------RSDVRSVKLSRD------RI-VVV--LEHKIYVYSFVDLKLLHQIETLANLR--  175 (415)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~~-------~~~i~~l~~~~~------~~-~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~--  175 (415)
                      -+|.+||+.+++.++.+..       .+.+..+.+...      +. ++.  ..+.|.|+|+.+++.-+.+..+..+.  
T Consensus        34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~  113 (287)
T PF03022_consen   34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPD  113 (287)
T ss_dssp             -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-S
T ss_pred             cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceecc
Confidence            5889999999999998873       345677877652      22 222  35689999999887655543322111  


Q ss_pred             ---------------ceE--EEec-CCCceEEEEeCCccCeE-EEE---EcCC---------cceEEEecCccceEEEEe
Q 014977          176 ---------------GLC--CLSH-HSSTSVLACPGLQRGQV-RIE---HFGL---------NMIKLINAHDSHIACFTL  224 (415)
Q Consensus       176 ---------------~~~--~~~~-~~~~~~l~~~g~~dg~v-~i~---~~~~---------~~~~~~~~~~~~i~~l~~  224 (415)
                                     .+.  ++.+ +++++.|.+..-....+ +|-   ..+.         ..++.+-........+++
T Consensus       114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~  193 (287)
T PF03022_consen  114 AGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI  193 (287)
T ss_dssp             SEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred             ccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Confidence                           111  1111 22333444322111111 220   0010         112222211235667889


Q ss_pred             CCCCCEEEEEeCCCcEEEEEECCCC---cEEEEE-ecCCCcccEEEEEeCC--CCCEEEEE
Q 014977          225 TLDGLLLATASTRGTLIRIFNTVDG---TRLQEV-RRGVDRAEIYSIALSP--NVQWLAVA  279 (415)
Q Consensus       225 sp~g~~l~s~s~dg~~I~vwd~~~~---~~~~~~-~~~~~~~~v~~l~~sp--dg~~l~s~  279 (415)
                      +++|.++++--..+. |..|+....   +....+ .....-..+.++.+.+  +|.+.+..
T Consensus       194 D~~G~ly~~~~~~~a-I~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  194 DPNGNLYFTDVEQNA-IGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             ETTTEEEEEECCCTE-EEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred             CCCCcEEEecCCCCe-EEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence            999998888888888 999998651   122222 2211134678889988  66655444

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=83.15  E-value=36  Score=30.91  Aligned_cols=72  Identities=18%  Similarity=0.287  Sum_probs=52.9

Q ss_pred             ceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCccc----EEEEEeCCCCCEEEEEeCCCeEEEEEce
Q 014977          218 HIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAE----IYSIALSPNVQWLAVASDKGTVHIFSLR  291 (415)
Q Consensus       218 ~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~----v~~l~~spdg~~l~s~s~dg~i~vwd~~  291 (415)
                      -+++|...++|.+|+++-.-.. |.+.|-++|+.+..+.+.. .+.    -..++|-.|-+++-....+++|.|||=.
T Consensus       145 HiNsV~~~~~G~yLiS~R~~~~-i~~I~~~tG~I~W~lgG~~-~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~  220 (299)
T PF14269_consen  145 HINSVDKDDDGDYLISSRNTST-IYKIDPSTGKIIWRLGGKR-NSDFTLPATNFSWQHDARFLNESNDDGTISLFDNA  220 (299)
T ss_pred             EeeeeeecCCccEEEEecccCE-EEEEECCCCcEEEEeCCCC-CCcccccCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence            3677788899999999988888 9999999999999887631 111    1124444555666666788899999963

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=82.83  E-value=5.4  Score=23.19  Aligned_cols=32  Identities=16%  Similarity=0.253  Sum_probs=20.1

Q ss_pred             EecCccceEEEEeCCCCCEEEEEeC-C--CcEEEEE
Q 014977          212 INAHDSHIACFTLTLDGLLLATAST-R--GTLIRIF  244 (415)
Q Consensus       212 ~~~~~~~i~~l~~sp~g~~l~s~s~-d--g~~I~vw  244 (415)
                      +...........|+|||+.|+-.+. +  |. -.||
T Consensus         4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~-~diy   38 (39)
T PF07676_consen    4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGS-FDIY   38 (39)
T ss_dssp             ES-SSSSEEEEEE-TTSSEEEEEEECT--SS-EEEE
T ss_pred             cccCCccccCEEEecCCCEEEEEecCCCCCC-cCEE
Confidence            3445556778899999998776554 3  55 5555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=82.82  E-value=66  Score=33.70  Aligned_cols=111  Identities=14%  Similarity=0.125  Sum_probs=69.5

Q ss_pred             CCceEEEEEeC-CCCEEEEEe-CCcEEEEEccCCc----eeEEEeccCCC----------eeEEEEeeeCCeEEEEecCC
Q 014977           44 EIELISVSWNQ-DYGCFAAGT-SCGFRIYNCEPFK----ETFRRDLKSGG----------FRIVEMLFRCNILALVGAGD  107 (415)
Q Consensus        44 ~~~V~~l~~sp-~g~~la~g~-d~~v~iw~~~~~~----~~~~~~~~~~~----------~~~~~~~~~~~~~~l~s~~~  107 (415)
                      ..+...++|+| +.+.||+-. .|...||++....    ..+.... ...          ..-..+.|.++...|+.++.
T Consensus       145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~-~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r  223 (765)
T PF10214_consen  145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSR-NISGSIIFDPEELSNWKRILWVSDSNRLLVCNR  223 (765)
T ss_pred             CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeecc-CCCccccCCCcccCcceeeEecCCCCEEEEEcC
Confidence            34677899998 456888888 9999999992111    1111110 111          11225667666544444444


Q ss_pred             CCCCCCCeEEEEECCCCCEEE---EEEccCceeEEEEcCC---eEEEEeCCeEEEEEcCC
Q 014977          108 NSQYPPTKVIIWDDHQSRCIG---EFAFRSDVRSVKLSRD---RIVVVLEHKIYVYSFVD  161 (415)
Q Consensus       108 d~~~~~~~i~vwd~~~~~~~~---~~~~~~~i~~l~~~~~---~~~~~~d~~i~iwd~~~  161 (415)
                            ..+.++|+++.....   ..+....|.++.-++.   ..+++....|...++..
T Consensus       224 ------~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~  277 (765)
T PF10214_consen  224 ------SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS  277 (765)
T ss_pred             ------CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence                  788889988776533   2225678889988887   33444788888888865

These proteins are found in fungi.

>PHA03098 kelch-like protein; Provisional

Probab=82.44  E-value=55  Score=32.51  Aligned_cols=109  Identities=15%  Similarity=0.079  Sum_probs=47.7

Q ss_pred             CCCCEEEEEe-CC------cEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCE
Q 014977           54 QDYGCFAAGT-SC------GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRC  126 (415)
Q Consensus        54 p~g~~la~g~-d~------~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~  126 (415)
                      .++..++.|+ ++      .+..||..+........+... .....+....+..++++ |.+....-..+..||..+++.
T Consensus       293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~-R~~~~~~~~~~~lyv~G-G~~~~~~~~~v~~yd~~~~~W  370 (534)
T PHA03098        293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYP-RKNPGVTVFNNRIYVIG-GIYNSISLNTVESWKPGESKW  370 (534)
T ss_pred             ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcc-cccceEEEECCEEEEEe-CCCCCEecceEEEEcCCCCce
Confidence            4556667766 32      355666655433211111111 11122222334444444 432111225688889877654


Q ss_pred             EEEEE--ccCceeEEEEcCCeEEEEe----C----CeEEEEEcCCcee
Q 014977          127 IGEFA--FRSDVRSVKLSRDRIVVVL----E----HKIYVYSFVDLKL  164 (415)
Q Consensus       127 ~~~~~--~~~~i~~l~~~~~~~~~~~----d----~~i~iwd~~~~~~  164 (415)
                      ...-.  ....-.+++...+..+++.    +    +.+..||..+.+-
T Consensus       371 ~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W  418 (534)
T PHA03098        371 REEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKW  418 (534)
T ss_pred             eeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCee
Confidence            33211  1111222333334444441    1    4578888876543

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=82.33  E-value=53  Score=32.29  Aligned_cols=130  Identities=11%  Similarity=0.159  Sum_probs=73.5

Q ss_pred             CeEEEEECCCCCEEEEEE--ccCceeEEEEcCCeEEEE--eCCeEEEEEcCC-ceeeeEEeccCCCcceEEEecCCCceE
Q 014977          114 TKVIIWDDHQSRCIGEFA--FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVD-LKLLHQIETLANLRGLCCLSHHSSTSV  188 (415)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~--~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (415)
                      +.+.+-+-.+|..+....  -...|+.+++..++.+-+  ..+-+..|+.++ +-.+....+ .....+.++-.++++.+
T Consensus       354 g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g~lWlgs~q~GLsrl~n~n~~avlde~ag-l~ss~V~aived~dnsL  432 (671)
T COG3292         354 GELMVANGSTGELVRSVHQLRGMNITTTLEDSRGRLWLGSMQNGLSRLDNKNEWAVLDEDAG-LPSSEVSAIVEDPDNSL  432 (671)
T ss_pred             ceEEEecCCCCcEEEEeeeccccccchhhhccCCcEEEEecccchhhhccCCcccccccccC-CcccceeeeeecCCCCE
Confidence            445555556666665543  245666677766665544  344566666555 222222222 12235677888888875


Q ss_pred             EEEeCCccCeEEEEEcCCcceEEEe--c---CccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC
Q 014977          189 LACPGLQRGQVRIEHFGLNMIKLIN--A---HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG  249 (415)
Q Consensus       189 l~~~g~~dg~v~i~~~~~~~~~~~~--~---~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~  249 (415)
                      . . |+.+|.++......+....+.  .   ..+.+..+.+.|+|++-+.. .+|  |..|+.+..
T Consensus       433 W-I-GTs~Glvk~~pe~~~v~n~ln~~~~~l~~s~~~~lg~~~~g~Lw~a~-g~g--va~~~sq~~  493 (671)
T COG3292         433 W-I-GTSGGLVKRDPESGRVLNLLNPGSHGLDGSRVEQLGLGPDGRLWLAA-GSG--VAAWESQRR  493 (671)
T ss_pred             E-E-eccCCeEecCccccchhcccccccCcCCcchhhhhccCCCCceEEEe-cce--eeeeccccc
Confidence            4 3 678888887544433322221  1   23457788899999853332 233  788876543

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.96  E-value=52  Score=35.45  Aligned_cols=32  Identities=19%  Similarity=0.273  Sum_probs=26.8

Q ss_pred             CCCceEEEEEeCCCCEEEEEe-CCcEEEEEccC
Q 014977           43 DEIELISVSWNQDYGCFAAGT-SCGFRIYNCEP   74 (415)
Q Consensus        43 h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~   74 (415)
                      -......++|.|...++|.++ .|.|++|-...
T Consensus        34 ~~~~~~~~afD~~q~llai~t~tg~i~~yg~~~   66 (993)
T KOG1983|consen   34 FPSTPSALAFDPTQGLLAIGTRTGAIKIYGQPG   66 (993)
T ss_pred             CCCCCcceeeccccceEEEEEecccEEEecccc
Confidence            334567889999999999999 99999998654

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=81.61  E-value=19  Score=36.91  Aligned_cols=33  Identities=15%  Similarity=0.224  Sum_probs=26.5

Q ss_pred             cCceeEEEEcCCeEEEE-eCCeEEEEEcCCceee
Q 014977          133 RSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLL  165 (415)
Q Consensus       133 ~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~  165 (415)
                      ...|.+++.+.+..++. .+|.|+-|-+.....+
T Consensus       228 gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqL  261 (1267)
T KOG0783|consen  228 GHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQL  261 (1267)
T ss_pred             ccceEEEEeecceeEEEeecceEEEeecCccccc
Confidence            56788899999988888 8999999998654433

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=81.53  E-value=13  Score=35.36  Aligned_cols=83  Identities=6%  Similarity=-0.048  Sum_probs=54.3

Q ss_pred             cCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEc--cCceeEEEEcC-----------------C
Q 014977           84 KSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAF--RSDVRSVKLSR-----------------D  144 (415)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~--~~~i~~l~~~~-----------------~  144 (415)
                      .+....+..+..+|++.+.+..+.-     |.|.++|+.++..++..+.  ...+.-+....                 .
T Consensus       304 ~D~~R~~~~i~~sP~~~laA~tDsl-----GRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~  378 (415)
T PF14655_consen  304 PDSKREGESICLSPSGRLAAVTDSL-----GRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRF  378 (415)
T ss_pred             ccCCceEEEEEECCCCCEEEEEcCC-----CcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcc
Confidence            3445557778888988877776554     9999999999887776651  11111111110                 1


Q ss_pred             eEEEE----eCCeEEEEEcCCceeeeEEecc
Q 014977          145 RIVVV----LEHKIYVYSFVDLKLLHQIETL  171 (415)
Q Consensus       145 ~~~~~----~d~~i~iwd~~~~~~~~~~~~~  171 (415)
                      ..+++    .-|.|.||.++++..+..+...
T Consensus       379 ~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v~  409 (415)
T PF14655_consen  379 ALFLVIYAPRRGILEVWSMRQGPRVAAFNVG  409 (415)
T ss_pred             eEEEEEEeccCCeEEEEecCCCCEEEEEEeC
Confidence            22333    5899999999999888776543

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=81.26  E-value=16  Score=26.21  Aligned_cols=41  Identities=17%  Similarity=0.182  Sum_probs=27.1

Q ss_pred             eCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEE
Q 014977          235 STRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVA  279 (415)
Q Consensus       235 s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~  279 (415)
                      ..+|. +.-||..+++....+.+   -.-.+.+++++|+.+|+.+
T Consensus        34 ~~~GR-ll~ydp~t~~~~vl~~~---L~fpNGVals~d~~~vlv~   74 (89)
T PF03088_consen   34 RPTGR-LLRYDPSTKETTVLLDG---LYFPNGVALSPDESFVLVA   74 (89)
T ss_dssp             ---EE-EEEEETTTTEEEEEEEE---ESSEEEEEE-TTSSEEEEE
T ss_pred             CCCcC-EEEEECCCCeEEEehhC---CCccCeEEEcCCCCEEEEE
Confidence            34577 89999988876444443   2257899999999977655

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=81.12  E-value=20  Score=38.53  Aligned_cols=104  Identities=14%  Similarity=0.265  Sum_probs=65.1

Q ss_pred             eCCCcEEEEEECCCCcEEEEEecCCCcccEEEEE--------eCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCC
Q 014977          235 STRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIA--------LSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTP  306 (415)
Q Consensus       235 s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~--------~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~  306 (415)
                      +.|+. +.+|+.+++.....+.+  ....|..+.        |-|.=+++...+.--.|.|+-+.-.+....        
T Consensus        96 TiDn~-L~lWny~~~~e~~~~d~--~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~--------  164 (1311)
T KOG1900|consen   96 TIDNN-LFLWNYESDNELAEYDG--LSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGE--------  164 (1311)
T ss_pred             EeCCe-EEEEEcCCCCccccccc--hhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCc--------
Confidence            45677 99999999777777766  334555553        344556666666666788988876653210        


Q ss_pred             CcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCC--ceEEEEecCCCEEEEEEeCCcEEE
Q 014977          307 SQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEV--THFIAAFGSQNTVVIVSMDGSFYR  384 (415)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~dg~~~~  384 (415)
                                                         +..+.      ..++++.+  .+.++....+++|+.+|.||.+|-
T Consensus       165 -----------------------------------~~~f~------~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyE  203 (1311)
T KOG1900|consen  165 -----------------------------------LSIFN------TSFKISVDGVSVNCITYTENGRIFFAGRDGNLYE  203 (1311)
T ss_pred             -----------------------------------ccccc------cceeeecCCceEEEEEeccCCcEEEeecCCCEEE
Confidence                                               00010      12455543  333444556699999999998887


Q ss_pred             EEEecC
Q 014977          385 CSFDPV  390 (415)
Q Consensus       385 ~~~~~~  390 (415)
                      ..+..+
T Consensus       204 l~Yq~~  209 (1311)
T KOG1900|consen  204 LVYQAE  209 (1311)
T ss_pred             EEEecc
Confidence            766553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	415
4av8_A	339	Kluyveromyces Lactis Hsv2 Complete Loop 6cd Length		1e-18
3vu4_A	355	Crystal Structure Of Kluyvelomyces Marxianus Hsv2 L		1e-15

>pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd Length = 339

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 110/251 (43%), Gaps = 21/251 (8%)
Query: 47  LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAG 106
           ++   +NQD  C    T   F IYN  P K    +++   G   + ML R N +A V   
Sbjct: 17  IVDYEFNQDQSCLIVSTPKSFDIYNVHPLKRIMSQEMPDAG--TIRMLHRTNYIAFVSTK 74
Query: 107 DNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDL--KL 164
               +      IWDD + + I      + V+ + LSR+ IVV     I ++ F +   K+
Sbjct: 75  KELLH------IWDDVKKQDITRVKLDAAVKDLFLSREFIVVSQGDVISIFKFGNPWNKI 128
Query: 165 LHQIE-----TLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHI 219
              I+       AN  GL   S+  +   +    LQ    ++   G+    L+ AH + +
Sbjct: 129 TEDIKFGGVCEFAN--GLLVYSNEFNLGQIHVTRLQTDAEQVVGKGV----LVKAHANPV 182
Query: 220 ACFXXXXXXXXXXXXXXRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVA 279
                             GTLIR+F T +G  ++E RRG+DR  I  +  SP+   LAV 
Sbjct: 183 KMVRLNRKGDMVATCSQDGTLIRVFQTDNGVLVREFRRGLDRTSIIDMRWSPDGSKLAVV 242
Query: 280 SDKGTVHIFSL 290
           SDK T+H+F +
Sbjct: 243 SDKWTLHVFEV 253

>pdb|3VU4|A Chain A, Crystal Structure Of Kluyvelomyces Marxianus Hsv2 Length = 355

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 104/252 (41%), Gaps = 24/252 (9%)
Query: 53  NQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYP 112
           NQD  C    T   F IYN  P      ++++      V ML R N +A V         
Sbjct: 28  NQDQSCLILSTLKSFEIYNVHPVAHIMSQEMRH--LSKVRMLHRTNYVAFVTG------V 79
Query: 113 PTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSF-------VDLKLL 165
              V IWDD + + +      + V+ + LSR+ IVV     I V+ F        D    
Sbjct: 80  KEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRF 139
Query: 166 HQIETLANLRGLCCLSHHSSTSVLACPGLQR-GQVRIEHFGLNMIK------LINAHDSH 218
             +   +N  GL   S+  +   +    LQ  G    +  G+          LI AH + 
Sbjct: 140 GGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNP 197
Query: 219 IACFXXXXXXXXXXXXXXRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAV 278
           I                  GT+IR+F T DG  ++E RRG+DRA++  +  S +   LAV
Sbjct: 198 IKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAV 257
Query: 279 ASDKGTVHIFSL 290
            SDK T+H+F +
Sbjct: 258 VSDKWTLHVFEI 269

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	415
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.98
2pm7_B	297	Protein transport protein SEC13, protein transport	99.98
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.98
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.98
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.98
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.97
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.97
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.97
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.97
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.97
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.97
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.97
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.97
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.97
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.97
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.97
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.97
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.96
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.96
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.96
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.96
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.96
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.96
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.96
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.96
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.96
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.95
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.95
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.95
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.95
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.95
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.95
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.95
3jro_A	753	Fusion protein of protein transport protein SEC13	99.95
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.94
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.94
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.94
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.94
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.93
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.92
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.92
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.91
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.9
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.9
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.9
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.89
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.88
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.88
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.87
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.87
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.87
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.87
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.87
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.87
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.87
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.86
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.86
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.86
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.85
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.85
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.84
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.84
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.84
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.84
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.82
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.81
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.81
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.81
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.8
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.8
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.8
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.78
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.78
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.78
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.77
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.76
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.75
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.73
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.72
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.72
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.71
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.7
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.69
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.68
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.68
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.67
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.65
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.64
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.64
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.63
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.62
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.61
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.61
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.6
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.6
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.58
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.58
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.58
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.57
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.57
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.55
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.55
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.54
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.54
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.54
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.53
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.52
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.52
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.51
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.51
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.47
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.45
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.45
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.45
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.44
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.43
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.42
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.42
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.39
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.39
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.36
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.36
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.33
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.31
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.3
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.3
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.3
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.28
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.27
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.22
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.19
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.18
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.15
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.15
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.14
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.13
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.1
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.1
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.1
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.06
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.05
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.02
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.99
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.96
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.9
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.9
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.88
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.88
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.87
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.86
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.86
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	98.83
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.81
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.81
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.81
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.8
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.79
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.79
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.77
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.76
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	98.74
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.73
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.73
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.72
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.68
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.64
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.64
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.63
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.54
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.54
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.54
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.49
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.48
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.46
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.45
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.44
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.44
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.44
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.42
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.42
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.35
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.34
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.34
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.26
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.25
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.23
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.23
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.19
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.19
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.17
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.15
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.12
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.11
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.09
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.09
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.09
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.08
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.07
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.06
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.02
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.99
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.96
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.91
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.91
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.81
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.8
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.69
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.66
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.65
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.62
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.56
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.55
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.38
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.37
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.35
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.32
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.21
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.18
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.12
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.09
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.01
3ott_A	758	Two-component system sensor histidine kinase; beta	97.0
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.98
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.96
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.78
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.69
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.68
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.66
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.45
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.35
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.25
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.21
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.12
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.01
3ott_A	758	Two-component system sensor histidine kinase; beta	95.95
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	95.79
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	95.42
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	95.4
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	95.35
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.03
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	94.84
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	94.37
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	93.89
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	93.72
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	93.69
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	93.59
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	93.19
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	93.02
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	92.21
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	91.35
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	91.32
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	90.88
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	90.73
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	90.53
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	89.76
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	86.81
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	86.77
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	85.58
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	85.1
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	83.2

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.9e-40  Score=302.63  Aligned_cols=284  Identities=14%  Similarity=0.222  Sum_probs=244.6

Q ss_pred             ccCCCCCCceEEEEEeCC----CCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCC
Q 014977           38 AFSDVDEIELISVSWNQD----YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYP  112 (415)
Q Consensus        38 ~~~~~h~~~V~~l~~sp~----g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~  112 (415)
                      ....+|.+.|++++|+|+    +.+|++|+ |+.|+||++..........+.+|...+.++.+++++..+++++.|    
T Consensus        26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D----  101 (321)
T 3ow8_A           26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLD----  101 (321)
T ss_dssp             EETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETT----
T ss_pred             eecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCC----
Confidence            346789999999999975    67899999 999999999876655555677899999999999999999999988    


Q ss_pred             CCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceE
Q 014977          113 PTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSV  188 (415)
Q Consensus       113 ~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (415)
                       +.|++||+.+++.+..+. +...+.+++|+|++.+++   .++.|++||+++++....+..+..  .+.++.++|++.+
T Consensus       102 -~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~--~v~~~~~spdg~~  178 (321)
T 3ow8_A          102 -AHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGK--FILSIAYSPDGKY  178 (321)
T ss_dssp             -SEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSS--CEEEEEECTTSSE
T ss_pred             -CcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCc--eEEEEEECCCCCE
Confidence             999999999999998887 778899999999999888   689999999999998888877766  4566777778888


Q ss_pred             EEEeCCccCeEEEEEcC-CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEE
Q 014977          189 LACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSI  267 (415)
Q Consensus       189 l~~~g~~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l  267 (415)
                      |++ |+.|+.|++|+.. ++.+..+.+|..+|.+++|+|++++|++++.|+. |++||+++++.+..+.+  |...|.++
T Consensus       179 las-g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~--h~~~v~~~  254 (321)
T 3ow8_A          179 LAS-GAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGY-IKIYDVQHANLAGTLSG--HASWVLNV  254 (321)
T ss_dssp             EEE-EETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSC-EEEEETTTCCEEEEECC--CSSCEEEE
T ss_pred             EEE-EcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCe-EEEEECCCcceeEEEcC--CCCceEEE
Confidence            876 6789999999875 4567788899999999999999999999999999 99999999999989888  88899999


Q ss_pred             EeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccc
Q 014977          268 ALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFS  347 (415)
Q Consensus       268 ~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (415)
                      +|+|++++|++++.|++|+|||++++++..                                                  
T Consensus       255 ~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~--------------------------------------------------  284 (321)
T 3ow8_A          255 AFCPDDTHFVSSSSDKSVKVWDVGTRTCVH--------------------------------------------------  284 (321)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEEEE--------------------------------------------------
T ss_pred             EECCCCCEEEEEeCCCcEEEEeCCCCEEEE--------------------------------------------------
Confidence            999999999999999999999998876432                                                  


Q ss_pred             cccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEe
Q 014977          348 SEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFD  388 (415)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~  388 (415)
                            ++.-....+..++|+++ ..|++++.||.|++|+++
T Consensus       285 ------~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          285 ------TFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             ------EECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             ------EEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence                  12222345677899998 788888999999999864

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2e-39  Score=308.11  Aligned_cols=281  Identities=12%  Similarity=0.171  Sum_probs=244.5

Q ss_pred             ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (415)
Q Consensus        38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i  116 (415)
                      ....+|..+|++++|+|++.+|++|+ |+.|+|||+.+.+....  +.+|...+.++.|++++.++++++.|     +.|
T Consensus       102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~--l~~h~~~V~~v~~~~~~~~l~sgs~D-----~~i  174 (410)
T 1vyh_C          102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERT--LKGHTDSVQDISFDHSGKLLASCSAD-----MTI  174 (410)
T ss_dssp             CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEE--ECCCSSCEEEEEECTTSSEEEEEETT-----SCC
T ss_pred             EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE--EeccCCcEEEEEEcCCCCEEEEEeCC-----CeE
Confidence            34578999999999999999999999 99999999998665443  45788899999999999999999988     999


Q ss_pred             EEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEe
Q 014977          117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP  192 (415)
Q Consensus       117 ~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  192 (415)
                      ++||+.+++++..+. |...|.+++|+|++.+++   .|+.|++||+.+++++..+..|..  .+..+.+++++.++++ 
T Consensus       175 ~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~--~v~~~~~~~~g~~l~s-  251 (410)
T 1vyh_C          175 KLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE--WVRMVRPNQDGTLIAS-  251 (410)
T ss_dssp             CEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEECTTSSEEEE-
T ss_pred             EEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCc--cEEEEEECCCCCEEEE-
Confidence            999999999988887 899999999999998777   699999999999999999988877  4556667777778876 


Q ss_pred             CCccCeEEEEEcCC-cceEEEecCccceEEEEeCCC--------------------CCEEEEEeCCCcEEEEEECCCCcE
Q 014977          193 GLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLD--------------------GLLLATASTRGTLIRIFNTVDGTR  251 (415)
Q Consensus       193 g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~--------------------g~~l~s~s~dg~~I~vwd~~~~~~  251 (415)
                      |+.|+.|++|+... .....+..|...|.+++|+|+                    |.+|++|+.|+. |++||++++++
T Consensus       252 ~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~-i~iwd~~~~~~  330 (410)
T 1vyh_C          252 CSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT-IKMWDVSTGMC  330 (410)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSE-EEEEETTTTEE
T ss_pred             EcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCe-EEEEECCCCce
Confidence            67899999998764 556778899999999999996                    679999999999 99999999999


Q ss_pred             EEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCC
Q 014977          252 LQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANP  331 (415)
Q Consensus       252 ~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (415)
                      +..+.+  |...|.+++|+|+|++|++++.||+|++||+.+++...                                  
T Consensus       331 ~~~~~~--h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~----------------------------------  374 (410)
T 1vyh_C          331 LMTLVG--HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK----------------------------------  374 (410)
T ss_dssp             EEEEEC--CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCE----------------------------------
T ss_pred             EEEEEC--CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEE----------------------------------
Confidence            999988  88899999999999999999999999999997766432                                  


Q ss_pred             CCcccccccccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEE
Q 014977          332 GSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSF  387 (415)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~  387 (415)
                                            .+......+..++|+++ ..|++++.||.|++|++
T Consensus       375 ----------------------~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          375 ----------------------TLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             ----------------------EEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred             ----------------------EEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence                                  23333456778899998 67888888999999975

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=3.2e-38  Score=292.37  Aligned_cols=282  Identities=11%  Similarity=0.077  Sum_probs=237.8

Q ss_pred             ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (415)
Q Consensus        38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i  116 (415)
                      ....+|.+.|++++|+|++++|++|+ |+.|+|||+.+.......  ..+...+.++.|+|++.++++++.|     +.|
T Consensus        49 ~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~s~~~d-----~~v  121 (340)
T 1got_B           49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAI--PLRSSWVMTCAYAPSGNYVACGGLD-----NIC  121 (340)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE--ECSSSCEEEEEECTTSSEEEEEETT-----CEE
T ss_pred             eeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEe--ecCCccEEEEEECCCCCEEEEEeCC-----CeE
Confidence            45679999999999999999999999 999999999886665543  3677789999999999999999988     999


Q ss_pred             EEEECCCCC----EEEEEE-ccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEE
Q 014977          117 IIWDDHQSR----CIGEFA-FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVL  189 (415)
Q Consensus       117 ~vwd~~~~~----~~~~~~-~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  189 (415)
                      ++|++.+++    ....+. |...|.++.|++++.++.  .|+.|++||+.+++.+..+..|..  .+.++.++|++.++
T Consensus       122 ~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~--~v~~~~~~~~~~~l  199 (340)
T 1got_B          122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG--DVMSLSLAPDTRLF  199 (340)
T ss_dssp             EEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEE
T ss_pred             EEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCC--ceEEEEECCCCCEE
Confidence            999988753    444455 889999999999988766  699999999999999999988887  45556666677777


Q ss_pred             EEeCCccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEE
Q 014977          190 ACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIA  268 (415)
Q Consensus       190 ~~~g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~  268 (415)
                      ++ |+.|+.|++|+... ..+..+.+|...|.+++|+|++++|++++.|+. |++||+++++.+..+....+...|.+++
T Consensus       200 ~s-g~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~-v~iwd~~~~~~~~~~~~~~~~~~v~~~~  277 (340)
T 1got_B          200 VS-GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT-CRLFDLRADQELMTYSHDNIICGITSVS  277 (340)
T ss_dssp             EE-EETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEECCTTCCSCEEEEE
T ss_pred             EE-EeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCc-EEEEECCCCcEEEEEccCCcccceEEEE
Confidence            76 67899999999754 567788999999999999999999999999999 9999999998887776433445799999


Q ss_pred             eCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCccccc
Q 014977          269 LSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSS  348 (415)
Q Consensus       269 ~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (415)
                      |+|+|++|++|+.||.|++||+.+++...                                                   
T Consensus       278 ~s~~g~~l~~g~~d~~i~vwd~~~~~~~~---------------------------------------------------  306 (340)
T 1got_B          278 FSKSGRLLLAGYDDFNCNVWDALKADRAG---------------------------------------------------  306 (340)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTCCEEE---------------------------------------------------
T ss_pred             ECCCCCEEEEECCCCeEEEEEcccCcEee---------------------------------------------------
Confidence            99999999999999999999998765321                                                   


Q ss_pred             ccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEE
Q 014977          349 EWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCS  386 (415)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~  386 (415)
                           .+.-....+..++|+++ ..|++++.||.|++|+
T Consensus       307 -----~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          307 -----VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             -----EEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             -----EeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence                 23333456778899998 5688888899999994

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=1e-37  Score=290.62  Aligned_cols=305  Identities=29%  Similarity=0.394  Sum_probs=244.0

Q ss_pred             cCCCCCCceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEE
Q 014977           39 FSDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII  118 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~v  118 (415)
                      ....|...|++++|+|||++||+|++..++||++++........+  +...+..+.+..+..++++++ +     +.|++
T Consensus        14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-d-----~~v~i   85 (355)
T 3vu4_A           14 PENHVSNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGV-K-----EVVHI   85 (355)
T ss_dssp             -----CCCCCEEEECTTSSEEEEECSSEEEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSS-T-----TEEEE
T ss_pred             ccccCCCceEEEEECCCCCEEEEEcCCEEEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECC-c-----cEEEE
Confidence            357899999999999999999999977789999998766555443  345566666666555555444 4     89999


Q ss_pred             EECCCCCEEEEEEccCceeEEEEcCCeEEEEeCCeEEEEEcCCc-eeeeEEeccCCCcceEEEecCCCceEEEEe-CCcc
Q 014977          119 WDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDL-KLLHQIETLANLRGLCCLSHHSSTSVLACP-GLQR  196 (415)
Q Consensus       119 wd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~d  196 (415)
                      ||+.+++.+..+.+...|.++.++++...++.++.|++||+.++ +.+..+..   +..++++++    .+++++ |+.+
T Consensus        86 Wd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~----~~la~~sg~~~  158 (355)
T 3vu4_A           86 WDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN----GLLVYSNEFNL  158 (355)
T ss_dssp             EETTTTEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEE---EEEEEEEET----TEEEEEESSCT
T ss_pred             EECCCCcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEecc---CCceEEEEc----cEEEEeCCCcC
Confidence            99999999999999899999999999988889999999999988 77776665   345666766    356665 8899


Q ss_pred             CeEEEEEcCCcc-----------------eEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCC
Q 014977          197 GQVRIEHFGLNM-----------------IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGV  259 (415)
Q Consensus       197 g~v~i~~~~~~~-----------------~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~  259 (415)
                      |.|++|+.....                 +..+.+|...|.+++|+|+|++|++++.|+..|+|||+++++.+..+..+.
T Consensus       159 g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~  238 (355)
T 3vu4_A          159 GQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGL  238 (355)
T ss_dssp             TCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTT
T ss_pred             cEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC
Confidence            999999987643                 788899999999999999999999999999339999999999999998444


Q ss_pred             CcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccc
Q 014977          260 DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMR  339 (415)
Q Consensus       260 ~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (415)
                      |...|.+++|+|++++|++++.|++|+|||++.+....                                  ...+..+ 
T Consensus       239 h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~----------------------------------~~~~~~~-  283 (355)
T 3vu4_A          239 DRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNK----------------------------------RHALKGW-  283 (355)
T ss_dssp             CCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCC----------------------------------SEETTTT-
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcc----------------------------------cccccce-
Confidence            77899999999999999999999999999998765321                                  1111111 


Q ss_pred             cccCcccccccceEEEEeCCCc---eEEEEecCC-CEEEEEEeCCcEEEEEEecCCCCc
Q 014977          340 GVLPKYFSSEWSFAQFHIPEVT---HFIAAFGSQ-NTVVIVSMDGSFYRCSFDPVHGGE  394 (415)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~i~~~~~dg~~~~~~~~~~~~~~  394 (415)
                       ++|.++...|.++.+.++...   ...++|+++ +.|++++.||.+++|.+...+.++
T Consensus       284 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~~~  341 (355)
T 3vu4_A          284 -INMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDEME  341 (355)
T ss_dssp             -EECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEETTTT
T ss_pred             -eeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCCCc
Confidence             577889999999999988644   377899999 567777789999999998754443

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=5.6e-38  Score=286.12  Aligned_cols=246  Identities=13%  Similarity=0.172  Sum_probs=209.5

Q ss_pred             ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (415)
Q Consensus        38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i  116 (415)
                      ....+|.+.|++++|+|++++|++|+ |+.|+|||+++......  +..+...+.++.|++++..+++++.|     +.|
T Consensus         7 ~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~s~s~d-----~~i   79 (304)
T 2ynn_A            7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRS--IQVTETPVRAGKFIARKNWIIVGSDD-----FRI   79 (304)
T ss_dssp             EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEE--EECCSSCEEEEEEEGGGTEEEEEETT-----SEE
T ss_pred             EeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEE--eeccCCcEEEEEEeCCCCEEEEECCC-----CEE
Confidence            34578999999999999999999999 99999999998665443  44677889999999999999999988     999


Q ss_pred             EEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCc-eeeeEEeccCCCcceEEEecCC-CceEEE
Q 014977          117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDL-KLLHQIETLANLRGLCCLSHHS-STSVLA  190 (415)
Q Consensus       117 ~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~l~  190 (415)
                      ++||+.+++.+..+. |...|.+++|+|++.+++   .|++|++||++++ .....+.+|...+  .++.++| ++.+++
T Consensus        80 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v--~~v~~~p~~~~~l~  157 (304)
T 2ynn_A           80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFV--MCVAFNPKDPSTFA  157 (304)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCE--EEEEECTTCTTEEE
T ss_pred             EEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcE--EEEEECCCCCCEEE
Confidence            999999999999988 899999999999998887   6999999999876 4556677787744  4555554 345665


Q ss_pred             EeCCccCeEEEEEcCC-cceEEE-ecCccceEEEEeCC--CCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEE
Q 014977          191 CPGLQRGQVRIEHFGL-NMIKLI-NAHDSHIACFTLTL--DGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYS  266 (415)
Q Consensus       191 ~~g~~dg~v~i~~~~~-~~~~~~-~~~~~~i~~l~~sp--~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~  266 (415)
                      + |+.|++|++|+... .....+ ..|...+..+.|+|  ++.+|++++.|+. |++||+++++++..+.+  |...|.+
T Consensus       158 s-gs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~-i~iWd~~~~~~~~~~~~--h~~~v~~  233 (304)
T 2ynn_A          158 S-GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT-IKIWDYQTKSCVATLEG--HMSNVSF  233 (304)
T ss_dssp             E-EETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSE-EEEEETTTTEEEEEEEC--CSSCEEE
T ss_pred             E-EeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCe-EEEEeCCCCccceeeCC--CCCCEEE
Confidence            5 77999999999754 333333 45668899999986  7789999999999 99999999999999998  8889999


Q ss_pred             EEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977          267 IALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       267 l~~spdg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                      ++|+|++++|++++.||+|++||+++++..
T Consensus       234 ~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~  263 (304)
T 2ynn_A          234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVE  263 (304)
T ss_dssp             EEECSSSSEEEEEETTSCEEEEETTTCCEE
T ss_pred             EEECCCCCEEEEEcCCCeEEEEECCCCcee
Confidence            999999999999999999999999887643

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=5.9e-38  Score=292.14  Aligned_cols=285  Identities=8%  Similarity=0.041  Sum_probs=239.6

Q ss_pred             CccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCe
Q 014977           37 TAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK  115 (415)
Q Consensus        37 ~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~  115 (415)
                      .....+|.+.|++++|+|++++|++|+ |+.|+|||..+........  .+...+.++.|+|++..+++++.|     +.
T Consensus        57 ~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~--~~~~~v~~~~~sp~g~~lasg~~d-----~~  129 (354)
T 2pbi_B           57 RRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVT--MPCTWVMACAYAPSGCAIACGGLD-----NK  129 (354)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--CSSSCCCEEEECTTSSEEEEESTT-----SE
T ss_pred             EEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEe--cCCCCEEEEEECCCCCEEEEeeCC-----CC
Confidence            345679999999999999999999999 9999999998766554433  566778899999999999999998     99


Q ss_pred             EEEEECCCC------CEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCC
Q 014977          116 VIIWDDHQS------RCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSS  185 (415)
Q Consensus       116 i~vwd~~~~------~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (415)
                      +++|++...      .....+. |...|.++.|+|++..++   .|++|++||+++++.+..+.+|...+..++++++++
T Consensus       130 i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~  209 (354)
T 2pbi_B          130 CSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSET  209 (354)
T ss_dssp             EEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSS
T ss_pred             EEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCC
Confidence            999997643      2233444 899999999999987766   699999999999999999999988777778888777


Q ss_pred             ceEEEEeCCccCeEEEEEcC-CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccE
Q 014977          186 TSVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEI  264 (415)
Q Consensus       186 ~~~l~~~g~~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v  264 (415)
                      +.++++ |+.||.|++|+.+ ++.+..+..|...|.+++|+|++.+|++++.|+. |++||+++++.+..+....+...+
T Consensus       210 g~~l~s-gs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~-v~lwd~~~~~~~~~~~~~~~~~~~  287 (354)
T 2pbi_B          210 GNTFVS-GGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDAT-CRLYDLRADREVAIYSKESIIFGA  287 (354)
T ss_dssp             CCEEEE-EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEECCTTCCSCE
T ss_pred             CCEEEE-EeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCe-EEEEECCCCcEEEEEcCCCcccce
Confidence            777776 6789999999865 4667788899999999999999999999999999 999999998887777654344578


Q ss_pred             EEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCc
Q 014977          265 YSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPK  344 (415)
Q Consensus       265 ~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (415)
                      .+++|+|++++|++++.|++|++||+.+++...                                               
T Consensus       288 ~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~-----------------------------------------------  320 (354)
T 2pbi_B          288 SSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVS-----------------------------------------------  320 (354)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTCSEEE-----------------------------------------------
T ss_pred             eEEEEeCCCCEEEEEECCCcEEEEECCCCceEE-----------------------------------------------
Confidence            999999999999999999999999998776321                                               


Q ss_pred             ccccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEE
Q 014977          345 YFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCS  386 (415)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~  386 (415)
                               .+.-..+.+..++|+|+ ..|++++.||.|++|.
T Consensus       321 ---------~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          321 ---------ILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             ---------EECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             ---------EEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence                     11222356677899999 6788888899999994

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.5e-37  Score=286.35  Aligned_cols=280  Identities=12%  Similarity=0.083  Sum_probs=214.8

Q ss_pred             CCCCCceEEEEEeCCCCEEEEEeCCcEEEEEccC----------CceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCC
Q 014977           41 DVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEP----------FKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQ  110 (415)
Q Consensus        41 ~~h~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~  110 (415)
                      ..|...|.+++|+|||++|++++|+++++||...          ........ ..+...+.++.|++++.++ +++.|  
T Consensus        27 ~~~~~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~d~~l~-~~s~d--  102 (344)
T 4gqb_B           27 ACMERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAG-VQTEAGVADLTWVGERGIL-VASDS--  102 (344)
T ss_dssp             SSCCSEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEE-EEESSCEEEEEEETTTEEE-EEETT--
T ss_pred             ccccCCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeee-eccCCCEEEEEEeCCCeEE-EEECC--
Confidence            4577889999999999999998888888887421          00000001 1334568999999997655 55655  


Q ss_pred             CCCCeEEEEECCCCCEEEEEE-----ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEec
Q 014977          111 YPPTKVIIWDDHQSRCIGEFA-----FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSH  182 (415)
Q Consensus       111 ~~~~~i~vwd~~~~~~~~~~~-----~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  182 (415)
                         |.|+|||+.+++.+....     |...|++++|+|++.+++   .|+.|++||+.+++++..+.+|...+..+++++
T Consensus       103 ---g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~  179 (344)
T 4gqb_B          103 ---GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASP  179 (344)
T ss_dssp             ---SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECS
T ss_pred             ---CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecC
Confidence               999999999987654432     789999999999999888   699999999999999999999988555555554


Q ss_pred             CCCceEEEEeCCccCeEEEEEcCC-cceEEE--ecCccceEEEEeCCC-CCEEEEEeCCCcEEEEEECCCCcEEEEEecC
Q 014977          183 HSSTSVLACPGLQRGQVRIEHFGL-NMIKLI--NAHDSHIACFTLTLD-GLLLATASTRGTLIRIFNTVDGTRLQEVRRG  258 (415)
Q Consensus       183 ~~~~~~l~~~g~~dg~v~i~~~~~-~~~~~~--~~~~~~i~~l~~sp~-g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~  258 (415)
                      +... +++ +++.|++|++|+... +....+  ..|...+.+++|+|+ +++|++|+.|+. |+|||+++++++..+.+ 
T Consensus       180 ~~~~-~l~-s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~-v~~wd~~~~~~~~~~~~-  255 (344)
T 4gqb_B          180 HKDS-VFL-SCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGT-VSLVDTKSTSCVLSSAV-  255 (344)
T ss_dssp             SCTT-EEE-EEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSE-EEEEESCC--CCEEEEC-
T ss_pred             CCCC-cee-eeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCc-EEEEECCCCcEEEEEcC-
Confidence            4332 444 477899999998765 444444  345667899999985 578999999999 99999999999999998 


Q ss_pred             CCcccEEEEEeCCCC-CEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccc
Q 014977          259 VDRAEIYSIALSPNV-QWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSF  337 (415)
Q Consensus       259 ~~~~~v~~l~~spdg-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (415)
                       |...|++++|+|++ ++|++++.|++|+|||+++++..                                         
T Consensus       256 -h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-----------------------------------------  293 (344)
T 4gqb_B          256 -HSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-----------------------------------------  293 (344)
T ss_dssp             -CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-----------------------------------------
T ss_pred             -CCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-----------------------------------------
Confidence             88899999999998 58999999999999999877532                                         


Q ss_pred             cccccCcccccccceEEEEeCCCceEEEEecCC-CE-EEEEEeCCcEEEEEEec
Q 014977          338 MRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NT-VVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-i~~~~~dg~~~~~~~~~  389 (415)
                                      .+.-..+.+..++|+|+ .. +++++.||.|++|.++.
T Consensus       294 ----------------~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~  331 (344)
T 4gqb_B          294 ----------------RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPT  331 (344)
T ss_dssp             ----------------EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred             ----------------EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence                            11112356677899998 34 45677799999999975

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.8e-36  Score=281.13  Aligned_cols=294  Identities=15%  Similarity=0.169  Sum_probs=229.5

Q ss_pred             cCCCCCC-ceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEE-eccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCe
Q 014977           39 FSDVDEI-ELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRR-DLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK  115 (415)
Q Consensus        39 ~~~~h~~-~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~  115 (415)
                      ...+|.. .|++++|+|+|++||+|+ |+.|+||++++....... ...+|...+.++.|+|++.+|++++.|     +.
T Consensus        10 ~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D-----~~   84 (345)
T 3fm0_A           10 RVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD-----AT   84 (345)
T ss_dssp             EECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETT-----SC
T ss_pred             eecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECC-----Cc
Confidence            3567887 999999999999999999 999999999876543332 234788899999999999999999988     99


Q ss_pred             EEEEECCCCC--EEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCce---eeeEEeccCCCcceEEEecCCCc
Q 014977          116 VIIWDDHQSR--CIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLK---LLHQIETLANLRGLCCLSHHSST  186 (415)
Q Consensus       116 i~vwd~~~~~--~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  186 (415)
                      |++||+.++.  ++..+. |...|.+++|+|++.+++   .|+.|++||+.+++   .+..+..|..  .+.++.++|++
T Consensus        85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~--~v~~~~~~p~~  162 (345)
T 3fm0_A           85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQ--DVKHVVWHPSQ  162 (345)
T ss_dssp             EEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCS--CEEEEEECSSS
T ss_pred             EEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCC--CeEEEEECCCC
Confidence            9999988774  455665 899999999999998888   69999999997653   4555666766  45556666667


Q ss_pred             eEEEEeCCccCeEEEEEcCCc---ceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC--------------
Q 014977          187 SVLACPGLQRGQVRIEHFGLN---MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG--------------  249 (415)
Q Consensus       187 ~~l~~~g~~dg~v~i~~~~~~---~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~--------------  249 (415)
                      .+|++ |+.|+.|++|+....   ....+.+|...|.+++|+|+|++|++++.|+. |+|||....              
T Consensus       163 ~~l~s-~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~-v~iW~~~~~~~~~~~~~~~~~~~  240 (345)
T 3fm0_A          163 ELLAS-ASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRT-VRIWRQYLPGNEQGVACSGSDPS  240 (345)
T ss_dssp             SCEEE-EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEEEECTTCTTCCCCC---CE
T ss_pred             CEEEE-EeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCe-EEEeccccCCCCccceeeccCCc
Confidence            77776 678999999987653   34678899999999999999999999999999 999996321              


Q ss_pred             -cEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCC
Q 014977          250 -TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTG  328 (415)
Q Consensus       250 -~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (415)
                       +++..+.+. |...|.+++|+|++..|++++.|+.|++|+++.+.....                              
T Consensus       241 ~~~~~~~~~~-h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~------------------------------  289 (345)
T 3fm0_A          241 WKCICTLSGF-HSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQ------------------------------  289 (345)
T ss_dssp             EEEEEEECSS-CSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTS------------------------------
T ss_pred             cceeEEecCC-CCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcce------------------------------
Confidence             233444432 677899999999999999999999999999886653210                              


Q ss_pred             CCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC--CEEEEEEeCCcEEEEEEec
Q 014977          329 ANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ--NTVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~dg~~~~~~~~~  389 (415)
                          ..+....             .........+..++|+|+  ..|++++.||.|++|++..
T Consensus       290 ----~~~~~~~-------------~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~  335 (345)
T 3fm0_A          290 ----PTFSLTA-------------HLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQR  335 (345)
T ss_dssp             ----CCEEEEE-------------EETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC
T ss_pred             ----eeEEEEe-------------eecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecC
Confidence                0000000             000112356778999997  4688888899999999976

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=7e-36  Score=274.12  Aligned_cols=291  Identities=16%  Similarity=0.220  Sum_probs=231.9

Q ss_pred             cCCCCCCceEEEEEeCCC-CEEEEEe-CCcEEEEEccCCcee---EEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCC
Q 014977           39 FSDVDEIELISVSWNQDY-GCFAAGT-SCGFRIYNCEPFKET---FRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPP  113 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~g-~~la~g~-d~~v~iw~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~  113 (415)
                      ...+|.+.|++++|+|++ ++|++|+ |+.|++|++......   ....+.+|...+.++.|++++.++++++.|     
T Consensus        12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D-----   86 (319)
T 3frx_A           12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWD-----   86 (319)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETT-----
T ss_pred             EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCC-----
Confidence            467999999999999965 8999999 999999998643221   223456888999999999999999999988     


Q ss_pred             CeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCC----C
Q 014977          114 TKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHS----S  185 (415)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~----~  185 (415)
                      +.|++||+.+++.+..+. |...|.+++|+|++.+++   .|+.|++||++ ++.+..+.+|...+..+.+.+..    +
T Consensus        87 ~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~  165 (319)
T 3frx_A           87 KTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDD  165 (319)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------
T ss_pred             CEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCC
Confidence            999999999999999888 999999999999998887   69999999986 46677777887755555555532    2


Q ss_pred             ceEEEEeCCccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccE
Q 014977          186 TSVLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEI  264 (415)
Q Consensus       186 ~~~l~~~g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v  264 (415)
                      +..+++ ++.|+.|++|+... +....+.+|...|.+++|+|+|++|++++.|+. |+|||+.+++.+..+..   ...|
T Consensus       166 ~~~l~s-~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~-i~iwd~~~~~~~~~~~~---~~~v  240 (319)
T 3frx_A          166 SVTIIS-AGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGE-IMLWNLAAKKAMYTLSA---QDEV  240 (319)
T ss_dssp             CCEEEE-EETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCE-EEEEETTTTEEEEEEEC---CSCE
T ss_pred             ccEEEE-EeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCe-EEEEECCCCcEEEEecC---CCcE
Confidence            335554 67899999999865 456678899999999999999999999999999 99999999999988874   4579


Q ss_pred             EEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCc
Q 014977          265 YSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPK  344 (415)
Q Consensus       265 ~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (415)
                      .+++|+|++.+|++++.++ +++|+++.+........+                                      + ..
T Consensus       241 ~~~~~sp~~~~la~~~~~~-i~v~~~~~~~~~~~~~~~--------------------------------------~-~~  280 (319)
T 3frx_A          241 FSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPE--------------------------------------F-AG  280 (319)
T ss_dssp             EEEEECSSSSEEEEEETTE-EEEEEETTEEEEEEECCC--------------------------------------C-TT
T ss_pred             EEEEEcCCCCEEEEEcCCC-cEEEEeCcCeeeeccCcc--------------------------------------c-cc
Confidence            9999999999999888665 999999876532111000                                      0 00


Q ss_pred             ccccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977          345 YFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~  389 (415)
                      +         .+........++|+|+ ..|++++.||.|++|++.-
T Consensus       281 ~---------~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t  317 (319)
T 3frx_A          281 Y---------SKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT  317 (319)
T ss_dssp             C---------CGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred             c---------ccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence            0         0001134456899999 6777888899999999864

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.8e-35  Score=274.22  Aligned_cols=293  Identities=15%  Similarity=0.204  Sum_probs=224.8

Q ss_pred             ccCCCCCCceEEEEE-----eC-CCCEEEEEe-CCcEEEEEccCCc-----eeEEEeccCCCeeEEEEeeeCCeEEEEec
Q 014977           38 AFSDVDEIELISVSW-----NQ-DYGCFAAGT-SCGFRIYNCEPFK-----ETFRRDLKSGGFRIVEMLFRCNILALVGA  105 (415)
Q Consensus        38 ~~~~~h~~~V~~l~~-----sp-~g~~la~g~-d~~v~iw~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~s~  105 (415)
                      ....+|.+.|++++|     ++ ++++|++|+ |+.|+||++...+     ......+.+|...+.++.|++++.+++++
T Consensus        15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~   94 (343)
T 2xzm_R           15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISS   94 (343)
T ss_dssp             EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEE
T ss_pred             eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEE
Confidence            346789999999999     76 999999999 9999999997532     12233456888899999999999999999


Q ss_pred             CCCCCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEe---ccCCCcceE
Q 014977          106 GDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIE---TLANLRGLC  178 (415)
Q Consensus       106 ~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~  178 (415)
                      +.|     +.|++||+.+++.+..+. |...|.+++|+|++..++   .|+.|++||+.... .....   .|..  .+.
T Consensus        95 s~D-----~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~~--~v~  166 (343)
T 2xzm_R           95 SWD-----KTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC-KFSSAEKENHSD--WVS  166 (343)
T ss_dssp             ETT-----SEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE-EEECCTTTSCSS--CEE
T ss_pred             cCC-----CcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc-eeeeecccCCCc--eee
Confidence            988     999999999999999888 999999999999998877   69999999997433 22222   3444  344


Q ss_pred             EEecCCCc----------eEEEEeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECC-
Q 014977          179 CLSHHSST----------SVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTV-  247 (415)
Q Consensus       179 ~~~~~~~~----------~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~-  247 (415)
                      ++.++|++          .++++ ++.|+.|++|+........+.+|...|.+++|+|+|++|++++.|+. |++||+. 
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~-v~iwd~~~  244 (343)
T 2xzm_R          167 CVRYSPIMKSANKVQPFAPYFAS-VGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKK-LLIWDILN  244 (343)
T ss_dssp             EEEECCCCCSCSCCCSSCCEEEE-EETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCE-EEEEESSC
T ss_pred             eeeeccccccccccCCCCCEEEE-EcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCe-EEEEECCC
Confidence            44444443          46665 67899999999888888889999999999999999999999999999 9999994 


Q ss_pred             CCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCC--CCCCCCCCCCcccccccCCCCCcccCCC
Q 014977          248 DGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGE--DSSSSLSTPSQSTELLNHSSSFDTLISP  325 (415)
Q Consensus       248 ~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (415)
                      .......+.   +...|.+++|+|++++|++++ |+.|++|++.+++...  .+...                       
T Consensus       245 ~~~~~~~~~---~~~~v~~v~~sp~~~~la~~~-d~~v~iw~~~~~~~~~~~~~~~~-----------------------  297 (343)
T 2xzm_R          245 LTYPQREFD---AGSTINQIAFNPKLQWVAVGT-DQGVKIFNLMTQSKAPVCTIEAE-----------------------  297 (343)
T ss_dssp             CSSCSEEEE---CSSCEEEEEECSSSCEEEEEE-SSCEEEEESSSCCSCSEEECCCC-----------------------
T ss_pred             Ccccceeec---CCCcEEEEEECCCCCEEEEEC-CCCEEEEEeCCCCCCceEEeecC-----------------------
Confidence            444444454   344699999999999887654 7779999998776431  00000                       


Q ss_pred             CCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977          326 STGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~  389 (415)
                                     .+.+..       ..+-.......++|+|+ ..|++++.||.|++|.++.
T Consensus       298 ---------------~~~~~~-------~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~  340 (343)
T 2xzm_R          298 ---------------PITKAE-------GQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFET  340 (343)
T ss_dssp             ---------------SGGGBT-------TBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred             ---------------cchhhh-------hhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence                           000000       00001234567899998 7788888899999999864

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2.3e-37  Score=288.43  Aligned_cols=282  Identities=12%  Similarity=0.108  Sum_probs=213.5

Q ss_pred             CCCCCCceEEEEEeCCCCEEEEEe-------CCcEEEEEccCCceeE--EEeccCCCeeEEEEeeeCCeEEEEecCCCCC
Q 014977           40 SDVDEIELISVSWNQDYGCFAAGT-------SCGFRIYNCEPFKETF--RRDLKSGGFRIVEMLFRCNILALVGAGDNSQ  110 (415)
Q Consensus        40 ~~~h~~~V~~l~~sp~g~~la~g~-------d~~v~iw~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~  110 (415)
                      ...|+..|++++|+|||++||+|+       |+.+++|+..+.....  ......+...+.+++|++++.+++++. |  
T Consensus        38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~-d--  114 (357)
T 4g56_B           38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASD-S--  114 (357)
T ss_dssp             --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEET-T--
T ss_pred             cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEEC-C--
Confidence            457999999999999999999998       3567888775432211  111125677899999999998777654 4  


Q ss_pred             CCCCeEEEEECCCCCEEEE-----EEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEec
Q 014977          111 YPPTKVIIWDDHQSRCIGE-----FAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSH  182 (415)
Q Consensus       111 ~~~~~i~vwd~~~~~~~~~-----~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  182 (415)
                         +.|++||+.+++....     ..|...|.+++|+|++.+++   .|+.|++||+.+++.+..+..|...+..+++++
T Consensus       115 ---g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~  191 (357)
T 4g56_B          115 ---GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACP  191 (357)
T ss_dssp             ---SCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred             ---CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcc
Confidence               9999999988765432     23789999999999998887   699999999999999999998888666555555


Q ss_pred             CCCceEEEEeCCccCeEEEEEcCC-cceEE--EecCccceEEEEeCCC-CCEEEEEeCCCcEEEEEECCCCcEEEEEecC
Q 014977          183 HSSTSVLACPGLQRGQVRIEHFGL-NMIKL--INAHDSHIACFTLTLD-GLLLATASTRGTLIRIFNTVDGTRLQEVRRG  258 (415)
Q Consensus       183 ~~~~~~l~~~g~~dg~v~i~~~~~-~~~~~--~~~~~~~i~~l~~sp~-g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~  258 (415)
                      +.+. +++ +++.|+.|++|+... +....  +..|...+.+++|+|+ +.+|++|+.|+. |++||+++++.+..+.. 
T Consensus       192 ~~~~-~~~-s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~-i~~wd~~~~~~~~~~~~-  267 (357)
T 4g56_B          192 GKDT-IFL-SCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGN-VSLVNIKNPDSAQTSAV-  267 (357)
T ss_dssp             TCSS-CEE-EEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSC-EEEEESSCGGGCEEECC-
T ss_pred             CCCc-eee-eeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccc-eeEEECCCCcEeEEEec-
Confidence            5443 334 466899999998764 33333  3456778999999997 468999999999 99999999999989887 


Q ss_pred             CCcccEEEEEeCCCC-CEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccc
Q 014977          259 VDRAEIYSIALSPNV-QWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSF  337 (415)
Q Consensus       259 ~~~~~v~~l~~spdg-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (415)
                       |...|++++|+|++ ++|++++.|++|+|||+++++.....                                      
T Consensus       268 -~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~--------------------------------------  308 (357)
T 4g56_B          268 -HSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL--------------------------------------  308 (357)
T ss_dssp             -CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC--------------------------------------
T ss_pred             -cceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC--------------------------------------
Confidence             78899999999987 58999999999999999887643110                                      


Q ss_pred             cccccCcccccccceEEEEeCCCceEEEEecC-C-CEEEEEEeCCcEEEEEEec
Q 014977          338 MRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGS-Q-NTVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~i~~~~~dg~~~~~~~~~  389 (415)
                                         -..+.+..++|+| + ..|++++.||.|++|.++.
T Consensus       309 -------------------~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~  343 (357)
T 4g56_B          309 -------------------SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS  343 (357)
T ss_dssp             -------------------CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred             -------------------CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence                               0124567789998 4 6788888899999999976

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.2e-35  Score=280.71  Aligned_cols=280  Identities=13%  Similarity=0.135  Sum_probs=224.7

Q ss_pred             CCCCceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEecc----------------CCCeeEEEEeeeCCeEEEEec
Q 014977           42 VDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLK----------------SGGFRIVEMLFRCNILALVGA  105 (415)
Q Consensus        42 ~h~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~l~s~  105 (415)
                      +|...|.+++|+|||++||+|+++.++||++.+++.......+                .+...+.++.|++++.+++++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~  141 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG  141 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEE
Confidence            5999999999999999999999999999999876654432211                122348899999999999999


Q ss_pred             CCCCCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEe
Q 014977          106 GDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLS  181 (415)
Q Consensus       106 ~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  181 (415)
                      +.|     +.|++||+.+++.+..+. |...|.+++|+|++..++   .|+.|++||+++++....+..+.   .+.++.
T Consensus       142 ~~d-----~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~---~v~~~~  213 (393)
T 1erj_A          142 AED-----RLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED---GVTTVA  213 (393)
T ss_dssp             ETT-----SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSS---CEEEEE
T ss_pred             cCC-----CeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCC---CcEEEE
Confidence            988     999999999999988887 899999999999998887   69999999999998887776433   345555


Q ss_pred             cCC-CceEEEEeCCccCeEEEEEcCCc-ceEEE-------ecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC---
Q 014977          182 HHS-STSVLACPGLQRGQVRIEHFGLN-MIKLI-------NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG---  249 (415)
Q Consensus       182 ~~~-~~~~l~~~g~~dg~v~i~~~~~~-~~~~~-------~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~---  249 (415)
                      +++ ++.++++ |+.|+.|++|+.... .+..+       .+|...|.+++|+|+|++|++++.|+. |++||+++.   
T Consensus       214 ~~~~~~~~l~~-~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~-v~~wd~~~~~~~  291 (393)
T 1erj_A          214 VSPGDGKYIAA-GSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS-VKLWNLQNANNK  291 (393)
T ss_dssp             ECSTTCCEEEE-EETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE-EEEEEC------
T ss_pred             EECCCCCEEEE-EcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCE-EEEEECCCCCCc
Confidence            555 5667765 778999999987653 33344       578999999999999999999999999 999999763   


Q ss_pred             ---------cEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCc
Q 014977          250 ---------TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFD  320 (415)
Q Consensus       250 ---------~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (415)
                               .+...+.+  |...|.+++|+|++++|++++.|+.|++||+++++...                       
T Consensus       292 ~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~-----------------------  346 (393)
T 1erj_A          292 SDSKTPNSGTCEVTYIG--HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL-----------------------  346 (393)
T ss_dssp             ---------CEEEEEEC--CSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEE-----------------------
T ss_pred             ccccCCCCCcceEEEec--ccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEE-----------------------
Confidence                     34456666  77899999999999999999999999999998876431                       


Q ss_pred             ccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecC------C-CEEEEEEeCCcEEEEEEec
Q 014977          321 TLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGS------Q-NTVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~i~~~~~dg~~~~~~~~~  389 (415)
                                                       .++-....+..++|++      + +.+++++.||.|++|++..
T Consensus       347 ---------------------------------~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          347 ---------------------------------MLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             ---------------------------------EEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             ---------------------------------EECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence                                             2222334555666664      4 5677788899999999875

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=3e-35  Score=268.85  Aligned_cols=283  Identities=13%  Similarity=0.217  Sum_probs=230.9

Q ss_pred             cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~  117 (415)
                      ...+|.+.|++++|+|++++|++|+ |+.|+||++.+.+...  .+..|...+.++.|++++..+++++.|     +.|+
T Consensus        18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~~~d-----~~i~   90 (312)
T 4ery_A           18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDD-----KTLK   90 (312)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE--EECCCSSCEEEEEECTTSSEEEEEETT-----SEEE
T ss_pred             EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch--hhccCCCceEEEEEcCCCCEEEEECCC-----CEEE
Confidence            4578999999999999999999999 9999999998765433  345788889999999999999999988     9999


Q ss_pred             EEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeC
Q 014977          118 IWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG  193 (415)
Q Consensus       118 vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  193 (415)
                      +||+.+++.+..+. |...|.++.|+|++.+++   .|+.|++||+++++.+..+..|..+  +.++.+++++.++++ +
T Consensus        91 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~-~  167 (312)
T 4ery_A           91 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP--VSAVHFNRDGSLIVS-S  167 (312)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC--EEEEEECTTSSEEEE-E
T ss_pred             EEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCc--EEEEEEcCCCCEEEE-E
Confidence            99999999999888 899999999999998887   6999999999999999888888764  455556666777776 6


Q ss_pred             CccCeEEEEEcCCc-ceEEE-ecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCccc-EEEEEeC
Q 014977          194 LQRGQVRIEHFGLN-MIKLI-NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAE-IYSIALS  270 (415)
Q Consensus       194 ~~dg~v~i~~~~~~-~~~~~-~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~-v~~l~~s  270 (415)
                      +.|+.|++|+.... .+..+ ..+...+..++|+|++++|++++.|+. |++||+++++.+..+..+..... +......
T Consensus       168 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (312)
T 4ery_A          168 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKGKCLKTYTGHKNEKYCIFANFSV  246 (312)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTE-EEEEETTTTEEEEEECSSCCSSSCCCEEEEC
T ss_pred             eCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCe-EEEEECCCCcEEEEEEecCCceEEEEEEEEe
Confidence            78999999997653 44444 346678999999999999999999999 99999999999988887322222 2223334


Q ss_pred             CCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCccccccc
Q 014977          271 PNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEW  350 (415)
Q Consensus       271 pdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (415)
                      +++.+|++++.||.|++||+++++...                                                     
T Consensus       247 ~~~~~l~sg~~dg~i~vwd~~~~~~~~-----------------------------------------------------  273 (312)
T 4ery_A          247 TGGKWIVSGSEDNLVYIWNLQTKEIVQ-----------------------------------------------------  273 (312)
T ss_dssp             SSSCEEEECCTTSCEEEEETTTCCEEE-----------------------------------------------------
T ss_pred             CCCcEEEEECCCCEEEEEECCCchhhh-----------------------------------------------------
Confidence            688999999999999999998776332                                                     


Q ss_pred             ceEEEEeCCCceEEEEecCC-CEEEEEE--eCCcEEEEEEe
Q 014977          351 SFAQFHIPEVTHFIAAFGSQ-NTVVIVS--MDGSFYRCSFD  388 (415)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~-~~i~~~~--~dg~~~~~~~~  388 (415)
                         .++-+...+..++|+|+ +.+++++  .||.|++|+.+
T Consensus       274 ---~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          274 ---KLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             ---EECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             ---hhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence               22223356677899998 5555555  49999999875

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.8e-35  Score=270.30  Aligned_cols=239  Identities=15%  Similarity=0.196  Sum_probs=212.9

Q ss_pred             CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEE
Q 014977           40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII  118 (415)
Q Consensus        40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~v  118 (415)
                      ..+|...|.+++|++++.++++++ |+.|++||+.+.+.....  ..+...+..+.|+|++..+++++.+     +.|++
T Consensus        76 l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~--~~~~~~~~~~~~spdg~~l~~g~~d-----g~v~i  148 (321)
T 3ow8_A           76 LEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSI--DAGPVDAWTLAFSPDSQYLATGTHV-----GKVNI  148 (321)
T ss_dssp             ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE--ECCTTCCCCEEECTTSSEEEEECTT-----SEEEE
T ss_pred             eccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEE--eCCCccEEEEEECCCCCEEEEEcCC-----CcEEE
Confidence            578999999999999999999999 999999999987655443  3566677889999999999999988     99999


Q ss_pred             EECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCC
Q 014977          119 WDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL  194 (415)
Q Consensus       119 wd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  194 (415)
                      |++.+++....+. +...|.+++|+|++.+++   .|+.|++||+.+++.+..+..|..++..+  .++|++.+|++ |+
T Consensus       149 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l--~~spd~~~l~s-~s  225 (321)
T 3ow8_A          149 FGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSL--TFSPDSQLLVT-AS  225 (321)
T ss_dssp             EETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEE--EECTTSCEEEE-EC
T ss_pred             EEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEE--EEcCCCCEEEE-Ec
Confidence            9999999988887 788899999999999888   69999999999999999998888755554  45556677776 77


Q ss_pred             ccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCC
Q 014977          195 QRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNV  273 (415)
Q Consensus       195 ~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg  273 (415)
                      .|+.|++|+... .....+.+|...|.+++|+|++++|++++.|+. |+|||+.+++++..+..  |...|.+++|+|++
T Consensus       226 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~-v~iwd~~~~~~~~~~~~--h~~~v~~v~~s~~g  302 (321)
T 3ow8_A          226 DDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKS-VKVWDVGTRTCVHTFFD--HQDQVWGVKYNGNG  302 (321)
T ss_dssp             TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEECC--CSSCEEEEEECTTS
T ss_pred             CCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCc-EEEEeCCCCEEEEEEcC--CCCcEEEEEECCCC
Confidence            899999998764 567788899999999999999999999999999 99999999999999987  88899999999999


Q ss_pred             CEEEEEeCCCeEEEEEce
Q 014977          274 QWLAVASDKGTVHIFSLR  291 (415)
Q Consensus       274 ~~l~s~s~dg~i~vwd~~  291 (415)
                      ++|++++.||+|+|||+.
T Consensus       303 ~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          303 SKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             SEEEEEETTCCEEEEECC
T ss_pred             CEEEEEeCCCeEEEEeCC
Confidence            999999999999999963

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-34  Score=269.26  Aligned_cols=283  Identities=12%  Similarity=0.128  Sum_probs=238.9

Q ss_pred             cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~  117 (415)
                      ...+|.+.|++++|+|++++|++++ |+.|+||++.+.+....  +..|...+.++.|++++..+++++.|     +.|+
T Consensus        27 ~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~~~d-----g~i~   99 (369)
T 3zwl_B           27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGT--LDGHTGTIWSIDVDCFTKYCVTGSAD-----YSIK   99 (369)
T ss_dssp             EEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEETT-----TEEE
T ss_pred             EEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhh--hhhcCCcEEEEEEcCCCCEEEEEeCC-----CeEE
Confidence            4678999999999999999999999 99999999988665443  44788899999999999999999887     9999


Q ss_pred             EEECCCCCEEEEEEccCceeEEEEcCCeEEEE---eC-----CeEEEEEcCCce-----------eeeEEeccCCCcceE
Q 014977          118 IWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LE-----HKIYVYSFVDLK-----------LLHQIETLANLRGLC  178 (415)
Q Consensus       118 vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~---~d-----~~i~iwd~~~~~-----------~~~~~~~~~~~~~~~  178 (415)
                      +||+.+++.+..+.+...+.+++|+|++..++   .+     +.|++||+...+           .+..+..+.....+.
T Consensus       100 iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (369)
T 3zwl_B          100 LWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAAT  179 (369)
T ss_dssp             EEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEE
T ss_pred             EEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcccee
Confidence            99999999999999999999999999998888   45     899999996553           233334444433566


Q ss_pred             EEecCCCceEEEEeCCccCeEEEEEcCC--cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEe
Q 014977          179 CLSHHSSTSVLACPGLQRGQVRIEHFGL--NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVR  256 (415)
Q Consensus       179 ~~~~~~~~~~l~~~g~~dg~v~i~~~~~--~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~  256 (415)
                      ++.+++++.++++ ++.||.|++|+...  ..+..+..|...|.+++|+|++++|++++.|+. |++||+++++.+..+.
T Consensus       180 ~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~v~d~~~~~~~~~~~  257 (369)
T 3zwl_B          180 VAGWSTKGKYIIA-GHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTN-SFLVDVSTLQVLKKYE  257 (369)
T ss_dssp             EEEECGGGCEEEE-EETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEEEE
T ss_pred             EEEEcCCCCEEEE-EcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCce-EEEEECCCCceeeeec
Confidence            7777777878876 66899999999875  667788899999999999999999999999999 9999999999998887


Q ss_pred             cCCCcccEEEEEeCCCCCEEEEEeCCC--------------eEEEEEceecccCCCCCCCCCCCCcccccccCCCCCccc
Q 014977          257 RGVDRAEIYSIALSPNVQWLAVASDKG--------------TVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTL  322 (415)
Q Consensus       257 ~~~~~~~v~~l~~spdg~~l~s~s~dg--------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (415)
                         +...+..++|+|+++++++++.++              .+++||+.+++..                          
T Consensus       258 ---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~--------------------------  308 (369)
T 3zwl_B          258 ---TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEI--------------------------  308 (369)
T ss_dssp             ---CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEE--------------------------
T ss_pred             ---CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcch--------------------------
Confidence               566899999999999999999998              7888887766532                          


Q ss_pred             CCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977          323 ISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~  389 (415)
                                                    ..+......+..++|+++ +.+++++.||.|++|++..
T Consensus       309 ------------------------------~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~  346 (369)
T 3zwl_B          309 ------------------------------GRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEK  346 (369)
T ss_dssp             ------------------------------EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred             ------------------------------hheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence                                          233334466778899998 6778888899999999975

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.2e-35  Score=294.55  Aligned_cols=289  Identities=12%  Similarity=0.099  Sum_probs=224.4

Q ss_pred             cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEec-----cCCCeeEEEEeeeCCeEEEEecCCCCCCC
Q 014977           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDL-----KSGGFRIVEMLFRCNILALVGAGDNSQYP  112 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~s~~~d~~~~  112 (415)
                      ...+|...|++++|+|+|++||+|+ |+.|+||++.+.+.......     ..|...+.++.|+|++..+++++.|    
T Consensus       185 ~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D----  260 (611)
T 1nr0_A          185 TFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD----  260 (611)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT----
T ss_pred             eeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCC----
Confidence            3568999999999999999999999 99999999987655433210     1578899999999999999999988    


Q ss_pred             CCeEEEEECCCCCEEEEE-------------------------------------------E-ccCceeEEEEcCCeEEE
Q 014977          113 PTKVIIWDDHQSRCIGEF-------------------------------------------A-FRSDVRSVKLSRDRIVV  148 (415)
Q Consensus       113 ~~~i~vwd~~~~~~~~~~-------------------------------------------~-~~~~i~~l~~~~~~~~~  148 (415)
                       +.|++||+.+++.+..+                                           . |...|.+++|+|++.++
T Consensus       261 -~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l  339 (611)
T 1nr0_A          261 -KTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTL  339 (611)
T ss_dssp             -SEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             -CeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEE
Confidence             99999999887765443                                           2 67789999999999988


Q ss_pred             E---eCCeEEEEEcCCceeeeEE-eccCC---------------------------------------------------
Q 014977          149 V---LEHKIYVYSFVDLKLLHQI-ETLAN---------------------------------------------------  173 (415)
Q Consensus       149 ~---~d~~i~iwd~~~~~~~~~~-~~~~~---------------------------------------------------  173 (415)
                      +   .|+.|++||+.+++....+ ..|..                                                   
T Consensus       340 ~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (611)
T 1nr0_A          340 FSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAV  419 (611)
T ss_dssp             EEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEE
T ss_pred             EEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEE
Confidence            8   6999999999776543221 00000                                                   


Q ss_pred             ----------------------------CcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceE--EEecCccceEEEE
Q 014977          174 ----------------------------LRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIK--LINAHDSHIACFT  223 (415)
Q Consensus       174 ----------------------------~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~--~~~~~~~~i~~l~  223 (415)
                                                  ...+.+++++|++.+|++ |+.|++|++|+.......  ...+|...|.+++
T Consensus       420 s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~las-gs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~  498 (611)
T 1nr0_A          420 SADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAV-GGQDSKVHVYKLSGASVSEVKTIVHPAEITSVA  498 (611)
T ss_dssp             CTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEE-EETTSEEEEEEEETTEEEEEEEEECSSCEEEEE
T ss_pred             eCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEE-eCCCCeEEEEEccCCceeeeeccCCCCceEEEE
Confidence                                        012345667788888876 678999999998764331  2267999999999


Q ss_pred             eCCCCCEEEEEeCCCcEEEEEECCC-CcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCC
Q 014977          224 LTLDGLLLATASTRGTLIRIFNTVD-GTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSS  302 (415)
Q Consensus       224 ~sp~g~~l~s~s~dg~~I~vwd~~~-~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~  302 (415)
                      |+|+|++|++++.|+. |++||+.+ ++.+.......|...|.+++|+|||++|++++.|++|+||+++++++..     
T Consensus       499 fspdg~~las~s~d~~-v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~-----  572 (611)
T 1nr0_A          499 FSNNGAFLVATDQSRK-VIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHP-----  572 (611)
T ss_dssp             ECTTSSEEEEEETTSC-EEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCC-----
T ss_pred             ECCCCCEEEEEcCCCC-EEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCccccc-----
Confidence            9999999999999999 99999987 5543321112278899999999999999999999999999998765320     


Q ss_pred             CCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeC-CCceEEEEecCCCEEEEEEeCCc
Q 014977          303 LSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIP-EVTHFIAAFGSQNTVVIVSMDGS  381 (415)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~dg~  381 (415)
                                                         +              ...... ...+..++|+++++|++++.||.
T Consensus       573 -----------------------------------~--------------~~~~~h~~~~v~~v~fs~d~~l~s~~~D~~  603 (611)
T 1nr0_A          573 -----------------------------------I--------------IIKGAHAMSSVNSVIWLNETTIVSAGQDSN  603 (611)
T ss_dssp             -----------------------------------E--------------EETTSSTTSCEEEEEEEETTEEEEEETTSC
T ss_pred             -----------------------------------c--------------hhhccCcccCeeEEEEcCCCEEEEecCCCC
Confidence                                               0              000001 24567789999988999999999


Q ss_pred             EEEEEEe
Q 014977          382 FYRCSFD  388 (415)
Q Consensus       382 ~~~~~~~  388 (415)
                      |++|+++
T Consensus       604 i~lW~~~  610 (611)
T 1nr0_A          604 IKFWNVP  610 (611)
T ss_dssp             EEEEECC
T ss_pred             EEEEecc
Confidence            9999873

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.4e-36  Score=285.77  Aligned_cols=289  Identities=15%  Similarity=0.162  Sum_probs=228.2

Q ss_pred             ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (415)
Q Consensus        38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i  116 (415)
                      ....+|.+.|++++|+|++++|++|+ |+.|+|||+.+.+.....  ..|...+.++.|+|++..+++++.|     +.+
T Consensus        60 ~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~--~~h~~~v~~~~~s~~g~~las~~~d-----~~v  132 (380)
T 3iz6_a           60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAI--KLHCPWVMECAFAPNGQSVACGGLD-----SAC  132 (380)
T ss_dssp             EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEE--ECCCTTCCCCEECTTSSEEEECCSS-----SCC
T ss_pred             ecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEE--ecCCCCEEEEEECCCCCEEEEeeCC-----CcE
Confidence            34679999999999999999999999 999999999887655443  3677778899999999999999998     999


Q ss_pred             EEEECCCCC-------EEEEEE-ccCceeEEEEcCCe-EEEE---eCCeEEEEEcCCceeeeEE-----eccCCCcceEE
Q 014977          117 IIWDDHQSR-------CIGEFA-FRSDVRSVKLSRDR-IVVV---LEHKIYVYSFVDLKLLHQI-----ETLANLRGLCC  179 (415)
Q Consensus       117 ~vwd~~~~~-------~~~~~~-~~~~i~~l~~~~~~-~~~~---~d~~i~iwd~~~~~~~~~~-----~~~~~~~~~~~  179 (415)
                      ++||+.+..       ....+. |...|.++.|.|++ ..++   .|++|++||+.+++.+..+     .+|..  .+.+
T Consensus       133 ~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~--~v~~  210 (380)
T 3iz6_a          133 SIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTA--DVLS  210 (380)
T ss_dssp             EEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCS--CEEE
T ss_pred             EEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCcc--CeEE
Confidence            999986532       222333 78899999999864 3333   7999999999999888777     34444  4555


Q ss_pred             EecCC-CceEEEEeCCccCeEEEEEcC--CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEe
Q 014977          180 LSHHS-STSVLACPGLQRGQVRIEHFG--LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVR  256 (415)
Q Consensus       180 ~~~~~-~~~~l~~~g~~dg~v~i~~~~--~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~  256 (415)
                      +.+++ ++.++++ |+.|++|++|+.+  ...+..+.+|...|.+++|+|+|++|++++.|+. |++||+++++.+..+.
T Consensus       211 ~~~~~~~~~~l~s-gs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~-i~lwd~~~~~~~~~~~  288 (380)
T 3iz6_a          211 LSINSLNANMFIS-GSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGT-CRLFDMRTGHQLQVYN  288 (380)
T ss_dssp             EEECSSSCCEEEE-EETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSC-EEEEETTTTEEEEEEC
T ss_pred             EEeecCCCCEEEE-EECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCe-EEEEECCCCcEEEEec
Confidence            55544 4456655 7799999999975  3677889999999999999999999999999999 9999999999988876


Q ss_pred             cCCC-----cccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCC
Q 014977          257 RGVD-----RAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANP  331 (415)
Q Consensus       257 ~~~~-----~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (415)
                      ....     ...|.+++|+|+|++|++|+.||.|++||+.+++.....                                
T Consensus       289 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~--------------------------------  336 (380)
T 3iz6_a          289 REPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNL--------------------------------  336 (380)
T ss_dssp             CCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEE--------------------------------
T ss_pred             ccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEE--------------------------------
Confidence            5211     124899999999999999999999999998876642100                                


Q ss_pred             CCcccccccccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977          332 GSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~  389 (415)
                                 ....         .-..+.+..++|+++ ..|++++.||.|++|.+..
T Consensus       337 -----------~~~~---------~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~  375 (380)
T 3iz6_a          337 -----------GTLQ---------NSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG  375 (380)
T ss_dssp             -----------CCSC---------SSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred             -----------eccc---------CCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence                       0000         001245567899999 6677777799999999864

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=9.7e-36  Score=275.69  Aligned_cols=243  Identities=13%  Similarity=0.122  Sum_probs=198.4

Q ss_pred             CCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEE--EeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEE
Q 014977           42 VDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFR--RDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII  118 (415)
Q Consensus        42 ~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~v  118 (415)
                      .|...|.+++|+|++ .|++|+ ||.|+|||+++.+....  ..+.+|...|.++.|++++..|++++.|     +.|++
T Consensus        80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d-----~~i~i  153 (344)
T 4gqb_B           80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKD-----ICIKV  153 (344)
T ss_dssp             EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETT-----SCEEE
T ss_pred             ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCC-----CeEEE
Confidence            356789999999996 456666 99999999988665433  2344788899999999999999999988     99999


Q ss_pred             EECCCCCEEEEEE-ccCceeEEEEcCCeE-EEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCc-eEEEEe
Q 014977          119 WDDHQSRCIGEFA-FRSDVRSVKLSRDRI-VVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSST-SVLACP  192 (415)
Q Consensus       119 wd~~~~~~~~~~~-~~~~i~~l~~~~~~~-~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~  192 (415)
                      ||+.+++++..+. |...|.+++|++++. +++   .|+.|++||+++++....+..+.....+.++.+++++ .+++ +
T Consensus       154 wd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~-s  232 (344)
T 4gqb_B          154 WDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFV-F  232 (344)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEE-E
T ss_pred             EECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceE-E
Confidence            9999999999998 999999999999874 444   6999999999999988877554444456666666644 4554 4


Q ss_pred             CCccCeEEEEEcC-CcceEEEecCccceEEEEeCCCC-CEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeC
Q 014977          193 GLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDG-LLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALS  270 (415)
Q Consensus       193 g~~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~s  270 (415)
                      |+.||.|++|+.. ++.+..+.+|...|++++|+|+| ++|++|+.|+. |+|||+.+++.+ .+.+  |...|++++|+
T Consensus       233 g~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~-i~vwd~~~~~~~-~~~~--H~~~V~~v~~s  308 (344)
T 4gqb_B          233 GDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCS-LAVLDSSLSELF-RSQA--HRDFVRDATWS  308 (344)
T ss_dssp             EETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSC-EEEECTTCCEEE-EECC--CSSCEEEEEEC
T ss_pred             eccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCe-EEEEECCCCcEE-EEcC--CCCCEEEEEEe
Confidence            7799999999865 56788899999999999999998 58999999999 999999888765 4555  88899999999


Q ss_pred             CCCC-EEEEEeCCCeEEEEEceeccc
Q 014977          271 PNVQ-WLAVASDKGTVHIFSLRVRVV  295 (415)
Q Consensus       271 pdg~-~l~s~s~dg~i~vwd~~~~~~  295 (415)
                      |+++ +|++++.|++|++|++.+...
T Consensus       309 p~~~~llas~s~D~~v~~w~v~~~~~  334 (344)
T 4gqb_B          309 PLNHSLLTTVGWDHQVVHHVVPTEPL  334 (344)
T ss_dssp             SSSTTEEEEEETTSCEEEEECCC---
T ss_pred             CCCCeEEEEEcCCCeEEEEECCCCCC
Confidence            9986 567999999999999987653

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-34  Score=266.91  Aligned_cols=243  Identities=14%  Similarity=0.206  Sum_probs=192.4

Q ss_pred             cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEec-cC-CCeeEEEEeeeCCeEEEEecCCCCCCCCCe
Q 014977           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDL-KS-GGFRIVEMLFRCNILALVGAGDNSQYPPTK  115 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~  115 (415)
                      ...+|.+.|++++|+|+  +||+|+ |+.|+||++..........+ .. |...+.++.|+|++.++++++.|     +.
T Consensus         9 ~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D-----~~   81 (330)
T 2hes_X            9 SLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD-----ST   81 (330)
T ss_dssp             EEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT-----SC
T ss_pred             eeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC-----Cc
Confidence            45689999999999998  999999 99999999986432222223 23 78889999999999999999988     99


Q ss_pred             EEEEECCC-------CCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCC----ceeeeEEeccCCCcceEEE
Q 014977          116 VIIWDDHQ-------SRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVD----LKLLHQIETLANLRGLCCL  180 (415)
Q Consensus       116 i~vwd~~~-------~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~----~~~~~~~~~~~~~~~~~~~  180 (415)
                      |++||+..       .+.+..+. |...|.+++|+|++.+++   .|+.|++||+..    .+++..+..|..  .+.++
T Consensus        82 v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~--~v~~v  159 (330)
T 2hes_X           82 VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQ--DVKHV  159 (330)
T ss_dssp             EEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSS--CEEEE
T ss_pred             EEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCC--ceEEE
Confidence            99999853       34555665 899999999999999888   699999999943    245667777776  45556


Q ss_pred             ecCCCceEEEEeCCccCeEEEEEcCC---cceEEEecCccceEEEEeCCC--CCEEEEEeCCCcEEEEEECCCC------
Q 014977          181 SHHSSTSVLACPGLQRGQVRIEHFGL---NMIKLINAHDSHIACFTLTLD--GLLLATASTRGTLIRIFNTVDG------  249 (415)
Q Consensus       181 ~~~~~~~~l~~~g~~dg~v~i~~~~~---~~~~~~~~~~~~i~~l~~sp~--g~~l~s~s~dg~~I~vwd~~~~------  249 (415)
                      .++|++.+|++ |+.|++|++|+...   +.+..+.+|...|.+++|+|+  +.+|++++.|+. |++||+..+      
T Consensus       160 ~~~p~~~~l~s-~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~-v~iw~~~~~~~~~~~  237 (330)
T 2hes_X          160 IWHPSEALLAS-SSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDST-VRVWKYMGDDEDDQQ  237 (330)
T ss_dssp             EECSSSSEEEE-EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSC-EEEEEEEEECTTSCE
T ss_pred             EECCCCCEEEE-EcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCe-EEEEEecCCCccccc
Confidence            66667777776 67899999998653   467788999999999999998  779999999999 999998654      


Q ss_pred             --cEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977          250 --TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (415)
Q Consensus       250 --~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  294 (415)
                        .....+.. .|...|.+++|++++ +|++++.||.|+||++.+++
T Consensus       238 ~~~~~~~~~~-~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~  282 (330)
T 2hes_X          238 EWVCEAILPD-VHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGE  282 (330)
T ss_dssp             EEEEEEECCS-CCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTE
T ss_pred             eeEEeeeccc-ccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCc
Confidence              23333332 267799999999765 79999999999999987653

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=4.4e-35  Score=278.27  Aligned_cols=243  Identities=12%  Similarity=0.227  Sum_probs=214.5

Q ss_pred             ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (415)
Q Consensus        38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i  116 (415)
                      ....+|.+.|.+++|+|++++|++|+ |+.|+|||+.+.+..  ..+.+|...+.++.|+|++..+++++.|     +.|
T Consensus       144 ~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~--~~~~~h~~~V~~v~~~p~~~~l~s~s~D-----~~i  216 (410)
T 1vyh_C          144 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECI--RTMHGHDHNVSSVSIMPNGDHIVSASRD-----KTI  216 (410)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEE--ECCCCCSSCEEEEEECSSSSEEEEEETT-----SEE
T ss_pred             EEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee--EEEcCCCCCEEEEEEeCCCCEEEEEeCC-----CeE
Confidence            44678999999999999999999999 999999999876543  3455888899999999999999999988     999


Q ss_pred             EEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCC-------
Q 014977          117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSS-------  185 (415)
Q Consensus       117 ~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  185 (415)
                      ++||+.+++++..+. |...|.++.+++++.+++   .|+.|++||+.+++....+..|...+..++++++..       
T Consensus       217 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~  296 (410)
T 1vyh_C          217 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEA  296 (410)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGC
T ss_pred             EEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhh
Confidence            999999999999988 899999999999998887   699999999999999999988888666666655421       


Q ss_pred             -----------ceEEEEeCCccCeEEEEEcC-CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEE
Q 014977          186 -----------TSVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQ  253 (415)
Q Consensus       186 -----------~~~l~~~g~~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~  253 (415)
                                 +.++++ |+.|+.|++|+.. +..+..+.+|...|.+++|+|+|++|++++.|+. |++||+.+++.+.
T Consensus       297 ~~~~~~~~~~~g~~l~s-gs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~-i~vwd~~~~~~~~  374 (410)
T 1vyh_C          297 TGSETKKSGKPGPFLLS-GSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT-LRVWDYKNKRCMK  374 (410)
T ss_dssp             CSCC-------CCEEEE-EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTE-EEEECCTTSCCCE
T ss_pred             ccccccccCCCCCEEEE-EeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCe-EEEEECCCCceEE
Confidence                       456665 7799999999965 5677888999999999999999999999999999 9999999999999


Q ss_pred             EEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEce
Q 014977          254 EVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR  291 (415)
Q Consensus       254 ~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~  291 (415)
                      .+.+  |...|++++|+|++.+|++|+.||+|+||+++
T Consensus       375 ~~~~--h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          375 TLNA--HEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             EEEC--CSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred             EEcC--CCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence            9988  78899999999999999999999999999864

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=4.7e-34  Score=282.92  Aligned_cols=275  Identities=17%  Similarity=0.254  Sum_probs=234.4

Q ss_pred             ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (415)
Q Consensus        38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i  116 (415)
                      ....+|...|.+++|+|++++|++++ |+.|++|+..... ..  .+..+...+.++.|+|++..+++++.+     +.|
T Consensus       297 ~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~-~~--~~~~~~~~v~~~~~s~~g~~l~~~~~d-----g~v  368 (577)
T 2ymu_A          297 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH-LQ--TLTGHSSSVWGVAFSPDGQTIASASDD-----KTV  368 (577)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE-EE--EECCCSSCEEEEEECTTSSEEEEEETT-----SEE
T ss_pred             EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-eE--EEeCCCCCEEEEEECCCCCEEEEEeCC-----CEE
Confidence            34578999999999999999999999 9999999987533 22  244778889999999999999999887     999


Q ss_pred             EEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEe
Q 014977          117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP  192 (415)
Q Consensus       117 ~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  192 (415)
                      ++|| .+++.+..+. |...|.+++|+|++.+++   .|+.|++||. +++.+..+..|...  +.++.++|++.+|++ 
T Consensus       369 ~~~~-~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~--v~~~~~s~d~~~l~~-  443 (577)
T 2ymu_A          369 KLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSS--VWGVAFSPDDQTIAS-  443 (577)
T ss_dssp             EEEE-TTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSC--EEEEEECTTSSEEEE-
T ss_pred             EEEc-CCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCC--eEEEEECCCCCEEEE-
Confidence            9999 5677777777 899999999999998887   6899999995 56788888888774  455666667778876 


Q ss_pred             CCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCC
Q 014977          193 GLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPN  272 (415)
Q Consensus       193 g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spd  272 (415)
                      ++.|+.|++|+.+++.+..+.+|...|.+++|+|++++|++++.|+. |++||. +++.+..+.+  |...|++++|+||
T Consensus       444 ~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~-i~iw~~-~~~~~~~~~~--h~~~v~~l~~s~d  519 (577)
T 2ymu_A          444 ASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT-VKLWNR-NGQLLQTLTG--HSSSVRGVAFSPD  519 (577)
T ss_dssp             EETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSE-EEEEET-TSCEEEEEEC--CSSCEEEEEECTT
T ss_pred             EcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCE-EEEEcC-CCCEEEEEeC--CCCCEEEEEEcCC
Confidence            66899999999999999999999999999999999999999999999 999995 7889999988  8889999999999


Q ss_pred             CCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccce
Q 014977          273 VQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSF  352 (415)
Q Consensus       273 g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (415)
                      |++|++++.||.|+|||.. ++..                                                        
T Consensus       520 g~~l~s~~~dg~v~lwd~~-~~~~--------------------------------------------------------  542 (577)
T 2ymu_A          520 GQTIASASDDKTVKLWNRN-GQLL--------------------------------------------------------  542 (577)
T ss_dssp             SSCEEEEETTSEEEEECTT-SCEE--------------------------------------------------------
T ss_pred             CCEEEEEECcCEEEEEeCC-CCEE--------------------------------------------------------
Confidence            9999999999999999953 3211                                                        


Q ss_pred             EEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEE
Q 014977          353 AQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCS  386 (415)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~  386 (415)
                      ..+.-+.+.+..++|+++ ..|++++.||.|++|+
T Consensus       543 ~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          543 QTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            233334466778899998 6788888899999994

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.5e-33  Score=259.49  Aligned_cols=279  Identities=12%  Similarity=0.105  Sum_probs=229.8

Q ss_pred             CCCCCceEEEEEeCCCCEEEEEeCCcEEEEEccCCce---eEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977           41 DVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKE---TFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (415)
Q Consensus        41 ~~h~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~  117 (415)
                      .+|...|.+++|+|++++|++++|+.|++|++++.+.   ........+...+.++.|++++..+++++.+     +.|+
T Consensus        48 ~~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~  122 (337)
T 1gxr_A           48 LNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA-----STLS  122 (337)
T ss_dssp             ECCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS-----SEEE
T ss_pred             ccCCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCC-----CcEE
Confidence            4799999999999999999999999999999986442   2222233678889999999999988888887     9999


Q ss_pred             EEECCCCC--EEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEE
Q 014977          118 IWDDHQSR--CIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC  191 (415)
Q Consensus       118 vwd~~~~~--~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  191 (415)
                      +||+.+++  ....+. |...|.+++|+|++.+++   .|+.|++||+.+++.+..+..|..  .+.++.+++++.++++
T Consensus       123 ~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~  200 (337)
T 1gxr_A          123 IWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD--GASCIDISNDGTKLWT  200 (337)
T ss_dssp             EEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEE
T ss_pred             EEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccC--ceEEEEECCCCCEEEE
Confidence            99999887  444454 788999999999988777   689999999999999988887776  4556666667777776


Q ss_pred             eCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCC
Q 014977          192 PGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSP  271 (415)
Q Consensus       192 ~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp  271 (415)
                       ++.|+.|++|+...........+...+.+++|+|++++|++++.++. |++||+.+++.. .+..  |...|.+++|+|
T Consensus       201 -~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~-i~~~~~~~~~~~-~~~~--~~~~v~~~~~~~  275 (337)
T 1gxr_A          201 -GGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSN-VEVLHVNKPDKY-QLHL--HESCVLSLKFAY  275 (337)
T ss_dssp             -EETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSC-EEEEETTSSCEE-EECC--CSSCEEEEEECT
T ss_pred             -EecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCc-EEEEECCCCCeE-EEcC--CccceeEEEECC
Confidence             66899999999876655555568889999999999999999999999 999999888764 4555  788999999999


Q ss_pred             CCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccc
Q 014977          272 NVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWS  351 (415)
Q Consensus       272 dg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (415)
                      ++++|++++.||.|++||+++++...                                                      
T Consensus       276 ~~~~l~~~~~dg~i~~~~~~~~~~~~------------------------------------------------------  301 (337)
T 1gxr_A          276 CGKWFVSTGKDNLLNAWRTPYGASIF------------------------------------------------------  301 (337)
T ss_dssp             TSSEEEEEETTSEEEEEETTTCCEEE------------------------------------------------------
T ss_pred             CCCEEEEecCCCcEEEEECCCCeEEE------------------------------------------------------
Confidence            99999999999999999998876321                                                      


Q ss_pred             eEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEe
Q 014977          352 FAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFD  388 (415)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~  388 (415)
                        .. ........+.|+++ +.+++++.||.+++|++-
T Consensus       302 --~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          302 --QS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             --EE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred             --Ee-cCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence              11 12345667889998 778888889999999873

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.7e-34  Score=288.09  Aligned_cols=290  Identities=13%  Similarity=0.128  Sum_probs=230.3

Q ss_pred             ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (415)
Q Consensus        38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i  116 (415)
                      ....+|...|++++|+|+|++||+|+ |+.|+|||+.+.+......+..|...+.++.|+|++..+++++.+.. ..+.|
T Consensus        53 ~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~-~~~~v  131 (611)
T 1nr0_A           53 EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRE-RFGHV  131 (611)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSS-CSEEE
T ss_pred             eEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCC-ceeEE
Confidence            44578999999999999999999999 99999999976554444455578889999999999988887765300 11467


Q ss_pred             EEEECCCCCEEEEEE-ccCceeEEEEcCCeE-EEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEE
Q 014977          117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRI-VVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC  191 (415)
Q Consensus       117 ~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~-~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  191 (415)
                      ++||  .++.+..+. |...|.+++|+|++. .++   .|++|++||..+++.+..+.+|..  .+.++.++|++.+|++
T Consensus       132 ~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~--~V~~v~fspdg~~las  207 (611)
T 1nr0_A          132 FLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTK--FVHSVRYNPDGSLFAS  207 (611)
T ss_dssp             EETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSS--CEEEEEECTTSSEEEE
T ss_pred             EEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccC--ceEEEEECCCCCEEEE
Confidence            7777  555555566 899999999999975 344   699999999999999999988887  4556666667778876


Q ss_pred             eCCccCeEEEEEcC-CcceEEEe-------cCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEec------
Q 014977          192 PGLQRGQVRIEHFG-LNMIKLIN-------AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR------  257 (415)
Q Consensus       192 ~g~~dg~v~i~~~~-~~~~~~~~-------~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~------  257 (415)
                       |+.|++|++|+.. ++.+..+.       +|...|.+++|+|+|++|++++.|+. |++||+.+++.+..+..      
T Consensus       208 -~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~-v~lWd~~~~~~~~~~~~~~~~~~  285 (611)
T 1nr0_A          208 -TGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT-IKIWNVATLKVEKTIPVGTRIED  285 (611)
T ss_dssp             -EETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTTEEEEEEECCSSGGG
T ss_pred             -EECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCe-EEEEeCCCCceeeeecCCCCccc
Confidence             6789999999964 45555553       79999999999999999999999999 99999998876654431      


Q ss_pred             -----------------------------------CCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCC
Q 014977          258 -----------------------------------GVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSS  302 (415)
Q Consensus       258 -----------------------------------~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~  302 (415)
                                                         ..|...|++++|+|||++|++++.|++|++||+.+++.....   
T Consensus       286 ~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~---  362 (611)
T 1nr0_A          286 QQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF---  362 (611)
T ss_dssp             CEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECS---
T ss_pred             eeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeec---
Confidence                                               126778999999999999999999999999999887643100   


Q ss_pred             CCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCCCEEEEEEeCCcE
Q 014977          303 LSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSF  382 (415)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dg~~  382 (415)
                                                              +            .........++|++++.+++++.|+.+
T Consensus       363 ----------------------------------------~------------~~h~~~v~~~~~s~~~~l~s~s~d~~v  390 (611)
T 1nr0_A          363 ----------------------------------------P------------DVHATMITGIKTTSKGDLFTVSWDDHL  390 (611)
T ss_dssp             ----------------------------------------S------------CSCSSCEEEEEECTTSCEEEEETTTEE
T ss_pred             ----------------------------------------c------------cCCcceEEEEEECCCCcEEEEEcCCce
Confidence                                                    0            001134556788888999999999999


Q ss_pred             EEEEEec
Q 014977          383 YRCSFDP  389 (415)
Q Consensus       383 ~~~~~~~  389 (415)
                      ++|.+..
T Consensus       391 ~~w~~~~  397 (611)
T 1nr0_A          391 KVVPAGG  397 (611)
T ss_dssp             EEECSSS
T ss_pred             EEeecCC
Confidence            9997653

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.7e-33  Score=259.69  Aligned_cols=293  Identities=14%  Similarity=0.150  Sum_probs=232.9

Q ss_pred             cCCCCCCceEEEEEeCC-CCEEEEEe-CCcEEEEEccCCce---eEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCC
Q 014977           39 FSDVDEIELISVSWNQD-YGCFAAGT-SCGFRIYNCEPFKE---TFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPP  113 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~-g~~la~g~-d~~v~iw~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~  113 (415)
                      ...+|.+.|++|+|+|+ +++|++|+ |+.|+|||+...+.   .....+.+|...+.++.|++++.++++++.|     
T Consensus        33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d-----  107 (340)
T 4aow_A           33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWD-----  107 (340)
T ss_dssp             EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETT-----
T ss_pred             EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccc-----
Confidence            36799999999999997 68999999 99999999976432   2334456788999999999999999999988     


Q ss_pred             CeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceee-eEEeccCCCcceEEEecCCCceE
Q 014977          114 TKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLL-HQIETLANLRGLCCLSHHSSTSV  188 (415)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  188 (415)
                      +.|++|+........... +...+..+.+++++..++   .|+.+++||+...... .....|...+..+++.+++...+
T Consensus       108 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  187 (340)
T 4aow_A          108 GTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI  187 (340)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCE
T ss_pred             ccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcE
Confidence            999999999888777776 678888999999888777   6899999998765443 33455666667777877777666


Q ss_pred             EEEeCCccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEE
Q 014977          189 LACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSI  267 (415)
Q Consensus       189 l~~~g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l  267 (415)
                      +++ ++.|+.|++|+... +.+..+.+|...|++++|+|++++|++++.|+. |++||+++++.+..+..   ...|..+
T Consensus       188 ~~s-~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~-i~iwd~~~~~~~~~~~~---~~~v~~~  262 (340)
T 4aow_A          188 IVS-CGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQ-AMLWDLNEGKHLYTLDG---GDIINAL  262 (340)
T ss_dssp             EEE-EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCE-EEEEETTTTEEEEEEEC---SSCEEEE
T ss_pred             EEE-EcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCe-EEEEEeccCceeeeecC---CceEEee
Confidence            665 66899999988765 556778899999999999999999999999999 99999999999988875   4579999


Q ss_pred             EeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccc
Q 014977          268 ALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFS  347 (415)
Q Consensus       268 ~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (415)
                      .|+|++.++ +++.|+.|++||++++....+...+                                             
T Consensus       263 ~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~---------------------------------------------  296 (340)
T 4aow_A          263 CFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQE---------------------------------------------  296 (340)
T ss_dssp             EECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC---------------------------------------------
T ss_pred             ecCCCCcee-eccCCCEEEEEECCCCeEEEecccc---------------------------------------------
Confidence            999987655 5567999999999876543211111                                             


Q ss_pred             cccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977          348 SEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~  389 (415)
                        ............+..++|+++ +.|++++.||.|++|++..
T Consensus       297 --~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~t  337 (340)
T 4aow_A          297 --VISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTI  337 (340)
T ss_dssp             ---------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred             --ceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence              000111222345677899998 6788888899999999874

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2.5e-35  Score=274.71  Aligned_cols=246  Identities=15%  Similarity=0.172  Sum_probs=198.2

Q ss_pred             CCCCCCceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEE--EeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977           40 SDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFR--RDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (415)
Q Consensus        40 ~~~h~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~  117 (415)
                      ..+|...|.+++|+|++++|+++.|+.|+|||+.+.+....  .....|...|.++.|+|++..+++++.|     +.|+
T Consensus        90 ~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~d-----g~v~  164 (357)
T 4g56_B           90 GVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKD-----FSVK  164 (357)
T ss_dssp             EEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETT-----SCEE
T ss_pred             cCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCC-----CeEE
Confidence            35788999999999999877666699999999987543322  2233678889999999999999999988     9999


Q ss_pred             EEECCCCCEEEEEE-ccCceeEEEEcCCeE-EEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCc-eEEEE
Q 014977          118 IWDDHQSRCIGEFA-FRSDVRSVKLSRDRI-VVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSST-SVLAC  191 (415)
Q Consensus       118 vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~-~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~  191 (415)
                      +||+.+++.+..+. |...|.+++|++++. +++   .|+.|++||+++++.+..+........+.++.++|++ .+++ 
T Consensus       165 iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la-  243 (357)
T 4g56_B          165 VWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFA-  243 (357)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEE-
T ss_pred             EEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEE-
Confidence            99999999999988 899999999999864 333   6899999999998887776655444456667776654 3454 


Q ss_pred             eCCccCeEEEEEcC-CcceEEEecCccceEEEEeCCCC-CEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEe
Q 014977          192 PGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDG-LLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIAL  269 (415)
Q Consensus       192 ~g~~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~  269 (415)
                      +|+.|+.|++|+.. .+.+..+.+|...|++++|+|++ ++|++++.|+. |+|||+++++.+..+ +  |...|++++|
T Consensus       244 ~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~-i~iwd~~~~~~~~~~-~--H~~~V~~vaf  319 (357)
T 4g56_B          244 CGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCT-VAVLDADFSEVFRDL-S--HRDFVTGVAW  319 (357)
T ss_dssp             EEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSC-EEEECTTSCEEEEEC-C--CSSCEEEEEE
T ss_pred             EeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCE-EEEEECCCCcEeEEC-C--CCCCEEEEEE
Confidence            47789999998865 46788899999999999999987 58999999999 999999999887655 4  8889999999


Q ss_pred             CC-CCCEEEEEeCCCeEEEEEceeccc
Q 014977          270 SP-NVQWLAVASDKGTVHIFSLRVRVV  295 (415)
Q Consensus       270 sp-dg~~l~s~s~dg~i~vwd~~~~~~  295 (415)
                      +| ++.+|++++.||+|++|++.+..+
T Consensus       320 sP~d~~~l~s~s~Dg~v~iW~~~~~~~  346 (357)
T 4g56_B          320 SPLDHSKFTTVGWDHKVLHHHLPSEGR  346 (357)
T ss_dssp             CSSSTTEEEEEETTSCEEEEECC----
T ss_pred             eCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence            98 899999999999999999977554

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.2e-33  Score=265.67  Aligned_cols=283  Identities=14%  Similarity=0.127  Sum_probs=223.2

Q ss_pred             ccCCCCCCceEEEEEeCCC-CEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCC
Q 014977           38 AFSDVDEIELISVSWNQDY-GCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPT  114 (415)
Q Consensus        38 ~~~~~h~~~V~~l~~sp~g-~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~  114 (415)
                      ....+|...|++++|+|++ ++|++|+ |+.|+||++.+........+..+...+.++.|++ ++..+++++.|     +
T Consensus        67 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-----~  141 (383)
T 3ei3_B           67 RTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR-----G  141 (383)
T ss_dssp             EEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT-----T
T ss_pred             EeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC-----C
Confidence            3457899999999999999 9999999 9999999999876665555457889999999999 77899999887     9


Q ss_pred             eEEEEECCCCCEEEEEE----ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCce
Q 014977          115 KVIIWDDHQSRCIGEFA----FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS  187 (415)
Q Consensus       115 ~i~vwd~~~~~~~~~~~----~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (415)
                      .|++||+.+ +.+..+.    +...|.+++|+|++.+++   .|+.|++||+ +++.+..+..|..  .+.++.+++++.
T Consensus       142 ~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~--~v~~~~~~~~~~  217 (383)
T 3ei3_B          142 ATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKA--KVTHAEFNPRCD  217 (383)
T ss_dssp             EEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSS--CEEEEEECSSCT
T ss_pred             EEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCC--cEEEEEECCCCC
Confidence            999999885 5555554    347899999999998888   6899999998 5778888888877  455566666666


Q ss_pred             -EEEEeCCccCeEEEEEcCC----cceEEEecCccceEEEEeCC-CCCEEEEEeCCCcEEEEEECCCCcEEEEEecCC--
Q 014977          188 -VLACPGLQRGQVRIEHFGL----NMIKLINAHDSHIACFTLTL-DGLLLATASTRGTLIRIFNTVDGTRLQEVRRGV--  259 (415)
Q Consensus       188 -~l~~~g~~dg~v~i~~~~~----~~~~~~~~~~~~i~~l~~sp-~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~--  259 (415)
                       ++++ ++.|+.|++|+...    ........|...|.+++|+| +|++|++++.|+. |++||+++++.+..+..+.  
T Consensus       218 ~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~  295 (383)
T 3ei3_B          218 WLMAT-SSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNE-IRVYSSYDWSKPDQIIIHPHR  295 (383)
T ss_dssp             TEEEE-EETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSE-EEEEETTBTTSCSEEEECCBC
T ss_pred             CEEEE-EeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCc-EEEEECCCCcccccccccccc
Confidence             5554 67899999999875    33333347999999999999 9999999999999 9999999988766666421  


Q ss_pred             ---C----------cccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCC
Q 014977          260 ---D----------RAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPS  326 (415)
Q Consensus       260 ---~----------~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (415)
                         +          ...+..++|+|++++  +++.||.|+|||+.+++...                             
T Consensus       296 ~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~-----------------------------  344 (383)
T 3ei3_B          296 QFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVH-----------------------------  344 (383)
T ss_dssp             CCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEE-----------------------------
T ss_pred             ccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceee-----------------------------
Confidence               1          134555777777777  77899999999998877432                             


Q ss_pred             CCCCCCCcccccccccCcccccccceEEEEe--CCCceEEEEecCCCEEEEEEeCCcEEEEEEec
Q 014977          327 TGANPGSSLSFMRGVLPKYFSSEWSFAQFHI--PEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~dg~~~~~~~~~  389 (415)
                                                 .+..  ..+....++|++++.++++++||.|++|+++.
T Consensus       345 ---------------------------~l~~~~~~~~~~~~~~s~~g~~l~s~sd~~i~iw~~~~  382 (383)
T 3ei3_B          345 ---------------------------QLRDPNAAGIISLNKFSPTGDVLASGMGFNILIWNRED  382 (383)
T ss_dssp             ---------------------------EECBTTBCSCCCEEEECTTSSEEEEEETTEEEEEECC-
T ss_pred             ---------------------------eecCCCCCceEEEEEEecCccEEEEecCCcEEEEecCC
Confidence                                       1111  12345567999996666666799999999863

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2e-33  Score=260.03  Aligned_cols=238  Identities=13%  Similarity=0.156  Sum_probs=202.9

Q ss_pred             CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCce--eEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977           40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE--TFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (415)
Q Consensus        40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i  116 (415)
                      ...|...|.+++|+|++++|++|+ |+.+++|++.+...  .....+.+|...+.++.|.+++. +++++.|     +.|
T Consensus        93 ~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d-----~~i  166 (340)
T 1got_B           93 IPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGD-----TTC  166 (340)
T ss_dssp             EECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETT-----SCE
T ss_pred             eecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECC-----CcE
Confidence            457889999999999999999999 99999999976432  23334557888899999998887 4555655     999


Q ss_pred             EEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEe
Q 014977          117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP  192 (415)
Q Consensus       117 ~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  192 (415)
                      ++||+.+++.+..+. |...|.+++|+|++.+++   .|+.|++||+++++.+..+..|...  +.++.++|++.+|++ 
T Consensus       167 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~--v~~v~~~p~~~~l~s-  243 (340)
T 1got_B          167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESD--INAICFFPNGNAFAT-  243 (340)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSC--EEEEEECTTSSEEEE-
T ss_pred             EEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCC--EEEEEEcCCCCEEEE-
Confidence            999999999998887 899999999999998887   6999999999999999999888874  455556666777776 


Q ss_pred             CCccCeEEEEEcCCcc-eEEEec--CccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEe
Q 014977          193 GLQRGQVRIEHFGLNM-IKLINA--HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIAL  269 (415)
Q Consensus       193 g~~dg~v~i~~~~~~~-~~~~~~--~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~  269 (415)
                      |+.|++|++|+..... +..+..  +...|.+++|+|+|++|++|+.|+. |++||+.+++.+..+.+  |...|.+++|
T Consensus       244 ~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~-i~vwd~~~~~~~~~~~~--h~~~v~~~~~  320 (340)
T 1got_B          244 GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN-CNVWDALKADRAGVLAG--HDNRVSCLGV  320 (340)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEEEEC--CSSCEEEEEE
T ss_pred             EcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCe-EEEEEcccCcEeeEeec--CCCcEEEEEE
Confidence            6789999999987543 333332  2347999999999999999999999 99999999999999988  8889999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEE
Q 014977          270 SPNVQWLAVASDKGTVHIFS  289 (415)
Q Consensus       270 spdg~~l~s~s~dg~i~vwd  289 (415)
                      +|+|++|++|+.|++|+|||
T Consensus       321 s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          321 TDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CTTSSCEEEEETTSCEEEEC
T ss_pred             cCCCCEEEEEcCCccEEecC
Confidence            99999999999999999996

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.5e-33  Score=264.49  Aligned_cols=247  Identities=12%  Similarity=0.189  Sum_probs=202.9

Q ss_pred             ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCc------eeEEEeccCCCeeEEEEeeeCC----e---EEEE
Q 014977           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFK------ETFRRDLKSGGFRIVEMLFRCN----I---LALV  103 (415)
Q Consensus        38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~------~~~~~~~~~~~~~~~~~~~~~~----~---~~l~  103 (415)
                      ....+|.+.|++++|+|  ++|++|+ |+.|+||++++.+      ....  +..|...+.++.|+++    +   .+++
T Consensus        10 ~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~g~~~~~l~   85 (397)
T 1sq9_A           10 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYS--HFVHKSGLHHVDVLQAIERDAFELCLVA   85 (397)
T ss_dssp             EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEE--EECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             hhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceE--EecCCCcEEEEEEecccccCCccccEEE
Confidence            34678999999999999  7999998 9999999998765      3333  3478888999999999    8   8899


Q ss_pred             ecCCCCCCCCCeEEEEECCCCCE-----EEEEE-c-----cCceeEEEEc----CCeEE-EE---eCCeEEEEEcCC---
Q 014977          104 GAGDNSQYPPTKVIIWDDHQSRC-----IGEFA-F-----RSDVRSVKLS----RDRIV-VV---LEHKIYVYSFVD---  161 (415)
Q Consensus       104 s~~~d~~~~~~~i~vwd~~~~~~-----~~~~~-~-----~~~i~~l~~~----~~~~~-~~---~d~~i~iwd~~~---  161 (415)
                      +++.|     +.|++||+.+++.     +..+. |     ...|.+++|+    |++.. ++   .|+.|++||+.+   
T Consensus        86 s~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  160 (397)
T 1sq9_A           86 TTSFS-----GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD  160 (397)
T ss_dssp             EEETT-----SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred             EEcCC-----CCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccc
Confidence            98887     9999999988886     77776 6     5899999999    99887 66   689999999988   


Q ss_pred             ---ceeee-----EEec-----cCCCcceEEEecCCCceEEEEeCCccCeEEEEEcC-CcceEEEec---C---ccceEE
Q 014977          162 ---LKLLH-----QIET-----LANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG-LNMIKLINA---H---DSHIAC  221 (415)
Q Consensus       162 ---~~~~~-----~~~~-----~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~-~~~~~~~~~---~---~~~i~~  221 (415)
                         ++.+.     .+..     ......+.++.+++++ ++++ ++.|+.|++|+.. .+.+..+..   |   ...|.+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~  238 (397)
T 1sq9_A          161 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIAT-GFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRS  238 (397)
T ss_dssp             HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEE-ECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEE
T ss_pred             ccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEE-EeCCCcEEEEECCCCceeEEEeccccccccCCccce
Confidence               66666     6644     2222345566666677 6665 7789999999876 566777888   8   999999


Q ss_pred             EEeCCCCCEEEEEeCC---CcEEEEEECCCCcEEEEEecCC-----------CcccEEEEEeCCCCCEEEEEeCCCeEEE
Q 014977          222 FTLTLDGLLLATASTR---GTLIRIFNTVDGTRLQEVRRGV-----------DRAEIYSIALSPNVQWLAVASDKGTVHI  287 (415)
Q Consensus       222 l~~sp~g~~l~s~s~d---g~~I~vwd~~~~~~~~~~~~~~-----------~~~~v~~l~~spdg~~l~s~s~dg~i~v  287 (415)
                      ++|+|++++|++++.|   +. |++||+++++.+..+....           |...|.+++|+|++++|++++.||.|++
T Consensus       239 i~~~~~~~~l~~~~~d~~~g~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  317 (397)
T 1sq9_A          239 VKFSPQGSLLAIAHDSNSFGC-ITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRF  317 (397)
T ss_dssp             EEECSSTTEEEEEEEETTEEE-EEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred             EEECCCCCEEEEEecCCCCce-EEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEE
Confidence            9999999999999999   99 9999999999988887521           5678999999999999999999999999


Q ss_pred             EEceecccC
Q 014977          288 FSLRVRVVG  296 (415)
Q Consensus       288 wd~~~~~~~  296 (415)
                      ||+++++..
T Consensus       318 wd~~~~~~~  326 (397)
T 1sq9_A          318 WDVKTKERI  326 (397)
T ss_dssp             EETTTTEEE
T ss_pred             EEcCCCcee
Confidence            999887654

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.5e-33  Score=261.69  Aligned_cols=303  Identities=10%  Similarity=0.127  Sum_probs=231.5

Q ss_pred             CCCCCCceEEEEEeCCCCEEE-EEe----CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCC---eEEEEecCCCCCC
Q 014977           40 SDVDEIELISVSWNQDYGCFA-AGT----SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCN---ILALVGAGDNSQY  111 (415)
Q Consensus        40 ~~~h~~~V~~l~~sp~g~~la-~g~----d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~s~~~d~~~  111 (415)
                      ..+|...|.+++|+|++..++ +|+    |+.|+||++++.+......+ .+...+.++.|+++   +..+++++.|   
T Consensus        14 ~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~l~~~~~d---   89 (357)
T 3i2n_A           14 QKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI-EKAKPIKCGTFGATSLQQRYLATGDFG---   89 (357)
T ss_dssp             EEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEE-EESSCEEEEECTTCCTTTCCEEEEETT---
T ss_pred             ccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeee-cccCcEEEEEEcCCCCCCceEEEecCC---
Confidence            467999999999999997665 453    78999999998665444333 67788999999998   5888888887   


Q ss_pred             CCCeEEEEECCCCC-EEEEEE-ccCceeEEEE------cCCeEEEE---eCCeEEEEEcCCce-eeeEEeccCC--Ccce
Q 014977          112 PPTKVIIWDDHQSR-CIGEFA-FRSDVRSVKL------SRDRIVVV---LEHKIYVYSFVDLK-LLHQIETLAN--LRGL  177 (415)
Q Consensus       112 ~~~~i~vwd~~~~~-~~~~~~-~~~~i~~l~~------~~~~~~~~---~d~~i~iwd~~~~~-~~~~~~~~~~--~~~~  177 (415)
                        +.|++||+.+++ .+..+. |...|.++.|      +|++..++   .|+.|++||+.+++ .+..+..+..  ...+
T Consensus        90 --g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v  167 (357)
T 3i2n_A           90 --GNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDC  167 (357)
T ss_dssp             --SCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCE
T ss_pred             --CeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCce
Confidence              999999999987 777777 8999999955      67887777   68999999998876 6666755443  2234


Q ss_pred             EEEe----cCCCceEEEEeCCccCeEEEEEcCCcceEEEecCccceEEEEeCC---CCCEEEEEeCCCcEEEEEECCCCc
Q 014977          178 CCLS----HHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTL---DGLLLATASTRGTLIRIFNTVDGT  250 (415)
Q Consensus       178 ~~~~----~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp---~g~~l~s~s~dg~~I~vwd~~~~~  250 (415)
                      .++.    +++++.++++ ++.|+.|++|+...........|...|.+++|+|   ++.+|++++.||. |++||+++++
T Consensus       168 ~~~~~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~  245 (357)
T 3i2n_A          168 WTVAFGNAYNQEERVVCA-GYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGK-FHVFDMRTQH  245 (357)
T ss_dssp             EEEEEECCCC-CCCEEEE-EETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTE-EEEEEEEEEE
T ss_pred             EEEEEEeccCCCCCEEEE-EccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCe-EEEEeCcCCC
Confidence            4444    5677778876 6689999999998877777788999999999999   9999999999999 9999998765


Q ss_pred             EEEEEe-----cCCCcccEEEEEeCCCCC-EEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCC
Q 014977          251 RLQEVR-----RGVDRAEIYSIALSPNVQ-WLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLIS  324 (415)
Q Consensus       251 ~~~~~~-----~~~~~~~v~~l~~spdg~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (415)
                      .+..+.     .  |...|.+++|+|+++ +|++++.||.|++||++++.........                      
T Consensus       246 ~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------------------  301 (357)
T 3i2n_A          246 PTKGFASVSEKA--HKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSE----------------------  301 (357)
T ss_dssp             TTTEEEEEEEEC--CSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTT----------------------
T ss_pred             cccceeeeccCC--CcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCC----------------------
Confidence            443333     5  788999999999998 8999999999999999987654211110                      


Q ss_pred             CCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC-CEEE-EEEeCCcEEEEEEec
Q 014977          325 PSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVV-IVSMDGSFYRCSFDP  389 (415)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~-~~~~dg~~~~~~~~~  389 (415)
                          +...           ...........+......+..++|+++ ..++ +++.||.|++|++..
T Consensus       302 ----g~~~-----------~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~  353 (357)
T 3i2n_A          302 ----GIEM-----------GVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK  353 (357)
T ss_dssp             ----SCCC-----------CCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred             ----CCcc-----------ccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence                0000           000011123345555567888999998 5566 577799999999975

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=2.4e-33  Score=262.03  Aligned_cols=240  Identities=13%  Similarity=0.129  Sum_probs=204.0

Q ss_pred             CCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEE
Q 014977           41 DVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIW  119 (415)
Q Consensus        41 ~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vw  119 (415)
                      ..|.++|++++|+|++++|++++ ++.|++|++++.+......+..|...+.++.|++++..+++++.|     +.|++|
T Consensus         5 ~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d-----g~i~vw   79 (372)
T 1k8k_C            5 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD-----RNAYVW   79 (372)
T ss_dssp             ESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETT-----SCEEEE
T ss_pred             cccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCC-----CeEEEE
Confidence            45899999999999999999998 999999999886533334455788899999999999999998887     999999


Q ss_pred             ECCCCCEEEEEE---ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCcee---eeEE-eccCCCcceEEEecCCCceEE
Q 014977          120 DDHQSRCIGEFA---FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKL---LHQI-ETLANLRGLCCLSHHSSTSVL  189 (415)
Q Consensus       120 d~~~~~~~~~~~---~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~l  189 (415)
                      |+.+++....+.   |...|.+++|+|++.+++   .|+.|++||+..++.   ...+ ..|..  .+.++.+++++.++
T Consensus        80 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l  157 (372)
T 1k8k_C           80 TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS--TVLSLDWHPNSVLL  157 (372)
T ss_dssp             EEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS--CEEEEEECTTSSEE
T ss_pred             ECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCC--CeeEEEEcCCCCEE
Confidence            998887665553   788999999999998887   589999999987653   2233 33444  56677777777788


Q ss_pred             EEeCCccCeEEEEEcC-------------------CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCc
Q 014977          190 ACPGLQRGQVRIEHFG-------------------LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT  250 (415)
Q Consensus       190 ~~~g~~dg~v~i~~~~-------------------~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~  250 (415)
                      ++ ++.|+.|++|+..                   .+.+..+..|...|.+++|+|++++|++++.|+. |++||+++++
T Consensus       158 ~~-~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~i~d~~~~~  235 (372)
T 1k8k_C          158 AA-GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST-VCLADADKKM  235 (372)
T ss_dssp             EE-EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTE-EEEEEGGGTT
T ss_pred             EE-EcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCE-EEEEECCCCc
Confidence            76 6689999999853                   4667777889999999999999999999999999 9999999999


Q ss_pred             EEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEcee
Q 014977          251 RLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV  292 (415)
Q Consensus       251 ~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~  292 (415)
                      .+..+..  |...|.+++|+|++++|+++ .|+.|++|++.+
T Consensus       236 ~~~~~~~--~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          236 AVATLAS--ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             EEEEEEC--SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             eeEEEcc--CCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence            9999987  77799999999999988887 899999999998

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2.5e-33  Score=254.46  Aligned_cols=246  Identities=13%  Similarity=0.123  Sum_probs=194.9

Q ss_pred             CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC--CeEEEEecCCCCCCCCCeE
Q 014977           40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC--NILALVGAGDNSQYPPTKV  116 (415)
Q Consensus        40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~d~~~~~~~i  116 (415)
                      ..+|.+.|++++|+|+|++||+|+ |+.|+||+++.........+.+|...|.++.|++  ++..|++++.|     ++|
T Consensus         5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D-----~~v   79 (297)
T 2pm7_B            5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD-----GKV   79 (297)
T ss_dssp             CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT-----TEE
T ss_pred             ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCC-----CEE
Confidence            568999999999999999999999 9999999997532222334568889999999975  37889999988     999


Q ss_pred             EEEECCCCC--EEEEEE-ccCceeEEEEcCC--eEEEE---eCCeEEEEEcCCcee--eeEEeccCCCcceEEEecCC--
Q 014977          117 IIWDDHQSR--CIGEFA-FRSDVRSVKLSRD--RIVVV---LEHKIYVYSFVDLKL--LHQIETLANLRGLCCLSHHS--  184 (415)
Q Consensus       117 ~vwd~~~~~--~~~~~~-~~~~i~~l~~~~~--~~~~~---~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~--  184 (415)
                      ++||+.+++  .+..+. |...|.+++|+|+  +.+++   .|+.|++||++++..  ...+..|...+..++++++.  
T Consensus        80 ~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~  159 (297)
T 2pm7_B           80 MIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE  159 (297)
T ss_dssp             EEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC--
T ss_pred             EEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccc
Confidence            999998874  445555 8899999999997  66665   699999999987532  34566777655555555431  


Q ss_pred             ---------CceEEEEeCCccCeEEEEEcCCc-----ceEEEecCccceEEEEeCCCC---CEEEEEeCCCcEEEEEECC
Q 014977          185 ---------STSVLACPGLQRGQVRIEHFGLN-----MIKLINAHDSHIACFTLTLDG---LLLATASTRGTLIRIFNTV  247 (415)
Q Consensus       185 ---------~~~~l~~~g~~dg~v~i~~~~~~-----~~~~~~~~~~~i~~l~~sp~g---~~l~s~s~dg~~I~vwd~~  247 (415)
                               ++.+|++ |+.|++|++|+.+..     ....+.+|...|.+++|+|++   .+|++++.|+. |+|||++
T Consensus       160 ~~~~~~~~~~~~~l~s-gs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~-v~iWd~~  237 (297)
T 2pm7_B          160 EDGEHNGTKESRKFVT-GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRT-CIIWTQD  237 (297)
T ss_dssp             ----------CCEEEE-EETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC-EEEEEES
T ss_pred             ccccCCCCCCcceEEE-EcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCc-EEEEEeC
Confidence                     1346665 778999999987642     456788999999999999985   89999999999 9999997


Q ss_pred             CCc---EEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEcee
Q 014977          248 DGT---RLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV  292 (415)
Q Consensus       248 ~~~---~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~  292 (415)
                      +..   ....+....|...|.+++|+|+|++|++++.||+|+||+...
T Consensus       238 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          238 NEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             STTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             CCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence            753   222332223677899999999999999999999999999864

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-32  Score=250.97  Aligned_cols=278  Identities=14%  Similarity=0.133  Sum_probs=228.7

Q ss_pred             ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (415)
Q Consensus        38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i  116 (415)
                      ....+|.+.|++++| |++++|++|+ ||.|++|++.+......  +..+...+.++.|++++..+++++.|     +.|
T Consensus        12 ~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i   83 (313)
T 3odt_A           12 ATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTV--VYTGQGFLNSVCYDSEKELLLFGGKD-----TMI   83 (313)
T ss_dssp             EEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEE--EEECSSCEEEEEEETTTTEEEEEETT-----SCE
T ss_pred             HHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEE--eecCCccEEEEEECCCCCEEEEecCC-----CeE
Confidence            446789999999999 9999999999 99999999987554433  33678889999999999999999988     999


Q ss_pred             EEEECCCC---CEEEEEE-ccCceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEE
Q 014977          117 IIWDDHQS---RCIGEFA-FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC  191 (415)
Q Consensus       117 ~vwd~~~~---~~~~~~~-~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  191 (415)
                      ++|++...   +.+..+. |...|.++.|+++....+ .|+.|++||  .++.+..+..|...+..+.+.+. ++..+++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~  160 (313)
T 3odt_A           84 NGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSF-SENKFLT  160 (313)
T ss_dssp             EEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEET-TTTEEEE
T ss_pred             EEEEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccC-CCCEEEE
Confidence            99997654   5566666 899999999965433333 799999999  67778888888776555555552 3445655


Q ss_pred             eCCccCeEEEEEcCCcceEEEec-CccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeC
Q 014977          192 PGLQRGQVRIEHFGLNMIKLINA-HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALS  270 (415)
Q Consensus       192 ~g~~dg~v~i~~~~~~~~~~~~~-~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~s  270 (415)
                       ++.|+.|++|+ .......+.. |...+.+++|+|++. +++++.|+. |++||+++++.+..+..  |...|.+++|+
T Consensus       161 -~~~d~~i~i~d-~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~-i~i~d~~~~~~~~~~~~--~~~~i~~~~~~  234 (313)
T 3odt_A          161 -ASADKTIKLWQ-NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGL-IKLVDMHTGDVLRTYEG--HESFVYCIKLL  234 (313)
T ss_dssp             -EETTSCEEEEE-TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSE-EEEEETTTCCEEEEEEC--CSSCEEEEEEC
T ss_pred             -EECCCCEEEEe-cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCe-EEEEECCchhhhhhhhc--CCceEEEEEEe
Confidence             66899999998 4555666666 899999999999998 999999999 99999999999999987  78899999999


Q ss_pred             CCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCccccccc
Q 014977          271 PNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEW  350 (415)
Q Consensus       271 pdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (415)
                      |++ .|++++.||.|++||+++++..                                                      
T Consensus       235 ~~~-~l~~~~~dg~v~iwd~~~~~~~------------------------------------------------------  259 (313)
T 3odt_A          235 PNG-DIVSCGEDRTVRIWSKENGSLK------------------------------------------------------  259 (313)
T ss_dssp             TTS-CEEEEETTSEEEEECTTTCCEE------------------------------------------------------
T ss_pred             cCC-CEEEEecCCEEEEEECCCCcee------------------------------------------------------
Confidence            999 5889999999999999887643                                                      


Q ss_pred             ceEEEEeCCCceEEEEecCCCEEEEEEeCCcEEEEEEec
Q 014977          351 SFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~dg~~~~~~~~~  389 (415)
                        ..+..+......++|++++.+++++.||.|++|++..
T Consensus       260 --~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~  296 (313)
T 3odt_A          260 --QVITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEK  296 (313)
T ss_dssp             --EEEECSSSCEEEEEECTTSCEEEEETTSCEEEEESCG
T ss_pred             --EEEeccCceEEEEEEccCCCEEEEeCCCcEEEEeCCC
Confidence              2344455567788999998899999999999999876

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=9.3e-33  Score=260.78  Aligned_cols=239  Identities=16%  Similarity=0.214  Sum_probs=206.2

Q ss_pred             CCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEEC
Q 014977           43 DEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD  121 (415)
Q Consensus        43 h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~  121 (415)
                      +...|.+++|+|+|++|++|+ |+.|+|||+++.+....  +.+|...+.++.|++++..+++++.|     +.|++||+
T Consensus       122 ~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~--~~~h~~~v~~~~~~p~~~~l~s~s~d-----~~v~iwd~  194 (393)
T 1erj_A          122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMI--LQGHEQDIYSLDYFPSGDKLVSGSGD-----RTVRIWDL  194 (393)
T ss_dssp             CCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE--ECCCSSCEEEEEECTTSSEEEEEETT-----SEEEEEET
T ss_pred             CceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE--EccCCCCEEEEEEcCCCCEEEEecCC-----CcEEEEEC
Confidence            344599999999999999999 99999999987654433  55788899999999999999999988     99999999


Q ss_pred             CCCCEEEEEEccCceeEEEEcC-CeEEEE---eCCeEEEEEcCCceeeeEE-------eccCCCcceEEEecCCCceEEE
Q 014977          122 HQSRCIGEFAFRSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDLKLLHQI-------ETLANLRGLCCLSHHSSTSVLA  190 (415)
Q Consensus       122 ~~~~~~~~~~~~~~i~~l~~~~-~~~~~~---~d~~i~iwd~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~  190 (415)
                      .++++...+.+...+.+++|+| ++.+++   .|+.|++||+.+++.+..+       .+|..  .+.++.+++++.+|+
T Consensus       195 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~--~v~~v~~~~~g~~l~  272 (393)
T 1erj_A          195 RTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD--SVYSVVFTRDGQSVV  272 (393)
T ss_dssp             TTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSS--CEEEEEECTTSSEEE
T ss_pred             CCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCC--CEEEEEECCCCCEEE
Confidence            9999999888889999999999 787777   6999999999998887766       23444  566677777788887


Q ss_pred             EeCCccCeEEEEEcCC-------------cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEec
Q 014977          191 CPGLQRGQVRIEHFGL-------------NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR  257 (415)
Q Consensus       191 ~~g~~dg~v~i~~~~~-------------~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~  257 (415)
                      + |+.|+.|++|+...             .....+.+|...|.+++|+|++.+|++++.|+. |++||+.+++.+..+.+
T Consensus       273 s-~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~-v~iwd~~~~~~~~~l~~  350 (393)
T 1erj_A          273 S-GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG-VLFWDKKSGNPLLMLQG  350 (393)
T ss_dssp             E-EETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSE-EEEEETTTCCEEEEEEC
T ss_pred             E-EeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCe-EEEEECCCCeEEEEECC
Confidence            6 67899999998753             234567889999999999999999999999999 99999999999999988


Q ss_pred             CCCcccEEEEEeCC------CCCEEEEEeCCCeEEEEEceecc
Q 014977          258 GVDRAEIYSIALSP------NVQWLAVASDKGTVHIFSLRVRV  294 (415)
Q Consensus       258 ~~~~~~v~~l~~sp------dg~~l~s~s~dg~i~vwd~~~~~  294 (415)
                        |...|.+++|++      ++++|++|+.||+|+||++++.+
T Consensus       351 --h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~~  391 (393)
T 1erj_A          351 --HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKIA  391 (393)
T ss_dssp             --CSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC-
T ss_pred             --CCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccccC
Confidence              888999999876      68899999999999999998654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.3e-33  Score=264.60  Aligned_cols=297  Identities=16%  Similarity=0.183  Sum_probs=232.4

Q ss_pred             CCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEE
Q 014977           41 DVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIW  119 (415)
Q Consensus        41 ~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vw  119 (415)
                      .+|...|++++|+|++++|++++ |+.|++|+.. .+...  .+..+...+.++.|++++..+++++.+     +.|++|
T Consensus       105 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~-~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iw  176 (425)
T 1r5m_A          105 GKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKT-GALLN--VLNFHRAPIVSVKWNKDGTHIISMDVE-----NVTILW  176 (425)
T ss_dssp             ---CBCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEE--EECCCCSCEEEEEECTTSSEEEEEETT-----CCEEEE
T ss_pred             cCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCeee--eccCCCccEEEEEECCCCCEEEEEecC-----CeEEEE
Confidence            34788999999999999999999 9999999943 33333  344788899999999999988888887     999999


Q ss_pred             ECCCCCEEEEEE-ccCc---------------eeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEe
Q 014977          120 DDHQSRCIGEFA-FRSD---------------VRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLS  181 (415)
Q Consensus       120 d~~~~~~~~~~~-~~~~---------------i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  181 (415)
                      |+.+++.+..+. +...               +.++.|++++.+++  .++.|++||+.+++.+..+..|...+  .++.
T Consensus       177 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i--~~~~  254 (425)
T 1r5m_A          177 NVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPI--SVLE  254 (425)
T ss_dssp             ETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCE--EEEE
T ss_pred             ECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCce--EEEE
Confidence            999999988887 4444               99999999988777  79999999999999888888777744  4555


Q ss_pred             cCCCceEEEEeCCccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCC
Q 014977          182 HHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVD  260 (415)
Q Consensus       182 ~~~~~~~l~~~g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~  260 (415)
                      +++++.+|++ ++.|+.|++|+... +.+..+..|...|.+++|+|++ +|++++.|+. |++||+++++.+..+..  |
T Consensus       255 ~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~-i~i~d~~~~~~~~~~~~--~  329 (425)
T 1r5m_A          255 FNDTNKLLLS-ASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGS-VRLWSLKQNTLLALSIV--D  329 (425)
T ss_dssp             EETTTTEEEE-EETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSE-EEEEETTTTEEEEEEEC--T
T ss_pred             ECCCCCEEEE-EcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCc-EEEEECCCCcEeEeccc--C
Confidence            5556667776 66899999998664 5677788899999999999999 9999999999 99999999999988887  7


Q ss_pred             cccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCccccccc
Q 014977          261 RAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRG  340 (415)
Q Consensus       261 ~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (415)
                      ...|.+++|+|++++|++++.||.|++||+++++........                           ....       
T Consensus       330 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~---------------------------~~~~-------  375 (425)
T 1r5m_A          330 GVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYG---------------------------NRDG-------  375 (425)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC---------------------------------------------
T ss_pred             CccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeec---------------------------cccc-------
Confidence            789999999999999999999999999999987632100000                           0000       


Q ss_pred             ccCcccccccceEEEEeCCC--ceEEEEecCC-CEEEEEEeCCcEEEEEEe
Q 014977          341 VLPKYFSSEWSFAQFHIPEV--THFIAAFGSQ-NTVVIVSMDGSFYRCSFD  388 (415)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~i~~~~~dg~~~~~~~~  388 (415)
                      .+..  ........+..+..  .+..++|+++ ..|++++.||.|++|+++
T Consensus       376 ~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          376 ILNP--LPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             ---C--EECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred             ccCc--ccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence            0000  00112234444433  7788999998 678888889999999874

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=4.7e-33  Score=281.97  Aligned_cols=247  Identities=14%  Similarity=0.219  Sum_probs=202.3

Q ss_pred             cCCCCCCceEEEEEeCCC-CEEEEEe-CCcEEEEEccCCce---eEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCC
Q 014977           39 FSDVDEIELISVSWNQDY-GCFAAGT-SCGFRIYNCEPFKE---TFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPP  113 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~g-~~la~g~-d~~v~iw~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~  113 (415)
                      ...+|.+.|++++|+|++ .+|++|+ |+.|+||++.....   .....+.+|...+.++.|++++.++++++.|     
T Consensus       377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~D-----  451 (694)
T 3dm0_A          377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWD-----  451 (694)
T ss_dssp             EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETT-----
T ss_pred             hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCC-----
Confidence            467899999999999875 7899999 99999999975332   2233455888999999999999999999988     


Q ss_pred             CeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEE---eccCCCcceEEEecCCCc
Q 014977          114 TKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQI---ETLANLRGLCCLSHHSST  186 (415)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  186 (415)
                      +.|++||+.+++.+..+. |...|.+++|+|++..++   .|++|++||+.........   ..|...+..++++++...
T Consensus       452 g~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  531 (694)
T 3dm0_A          452 GELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQ  531 (694)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSS
T ss_pred             CcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCc
Confidence            999999999999998887 999999999999998877   6999999998654333222   234444444455544433


Q ss_pred             eEEEEeCCccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEE
Q 014977          187 SVLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIY  265 (415)
Q Consensus       187 ~~l~~~g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~  265 (415)
                      ..+++ |+.|++|++|+... +....+.+|...|.+++|+|+|++|++++.|+. |++||+.+++.+..+.   +...|.
T Consensus       532 ~~l~s-~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~-i~iwd~~~~~~~~~~~---~~~~v~  606 (694)
T 3dm0_A          532 PTIVS-ASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGV-VLLWDLAEGKKLYSLE---ANSVIH  606 (694)
T ss_dssp             CEEEE-EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSB-CEEEETTTTEEEECCB---CSSCEE
T ss_pred             ceEEE-EeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCe-EEEEECCCCceEEEec---CCCcEE
Confidence            45655 77899999999765 456678899999999999999999999999999 9999999999887776   345799


Q ss_pred             EEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977          266 SIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       266 ~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                      +++|+|++.+|++++ ++.|+|||+++++..
T Consensus       607 ~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~  636 (694)
T 3dm0_A          607 ALCFSPNRYWLCAAT-EHGIKIWDLESKSIV  636 (694)
T ss_dssp             EEEECSSSSEEEEEE-TTEEEEEETTTTEEE
T ss_pred             EEEEcCCCcEEEEEc-CCCEEEEECCCCCCh
Confidence            999999999888776 555999999987754

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=6.1e-32  Score=267.70  Aligned_cols=276  Identities=16%  Similarity=0.217  Sum_probs=231.4

Q ss_pred             ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (415)
Q Consensus        38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i  116 (415)
                      ....+|...|.+++|+|++++|++++ |+.|++|+.+. +..  ..+..|...+.++.|+|++..+++++.|     +.|
T Consensus       256 ~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~-~~~--~~~~~h~~~v~~~~~~~~~~~l~t~~~d-----~~i  327 (577)
T 2ymu_A          256 QTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG-QLL--QTLTGHSSSVWGVAFSPDGQTIASASDD-----KTV  327 (577)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEE--EEECCCSSCEEEEEECTTSSEEEEEETT-----SCE
T ss_pred             EEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC-cEE--EEEecCCCCeEEEEECCCCCEEEEEeCC-----CeE
Confidence            34567999999999999999999999 99999999764 222  2345788889999999999999999887     999


Q ss_pred             EEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEe
Q 014977          117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP  192 (415)
Q Consensus       117 ~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  192 (415)
                      ++||.... .+..+. |...+.+++|+|++..++   .|+.|++||. +++.+..+..|...  +.++.+++++.+|++ 
T Consensus       328 ~~w~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~--v~~~~~s~dg~~l~~-  402 (577)
T 2ymu_A          328 KLWNRNGQ-HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSS--VRGVAFSPDGQTIAS-  402 (577)
T ss_dssp             EEEETTSC-EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSC--EEEEEECTTSSCEEE-
T ss_pred             EEEeCCCC-eeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCC--eEEEEECCCCCEEEE-
Confidence            99996544 445555 889999999999999887   6899999995 56788888888774  455666667778876 


Q ss_pred             CCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCC
Q 014977          193 GLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPN  272 (415)
Q Consensus       193 g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spd  272 (415)
                      ++.|+.|++|+.+++.+..+.+|...|.+++|+|++++|++++.|+. |++||. +++.+..+..  |...|.+++|+|+
T Consensus       403 ~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~-v~~w~~-~~~~~~~~~~--~~~~v~~~~~spd  478 (577)
T 2ymu_A          403 ASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKT-VKLWNR-NGQLLQTLTG--HSSSVRGVAFSPD  478 (577)
T ss_dssp             EETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSE-EEEEET-TSCEEEEEEC--CSSCEEEEEECTT
T ss_pred             EeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCE-EEEEEC-CCCEEEEEcC--CCCCEEEEEEcCC
Confidence            66899999999999999999999999999999999999999999999 999996 6788888888  7889999999999


Q ss_pred             CCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccce
Q 014977          273 VQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSF  352 (415)
Q Consensus       273 g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (415)
                      +++|++++.|++|++||.. ++..                                                        
T Consensus       479 ~~~las~~~d~~i~iw~~~-~~~~--------------------------------------------------------  501 (577)
T 2ymu_A          479 GQTIASASDDKTVKLWNRN-GQLL--------------------------------------------------------  501 (577)
T ss_dssp             SCEEEEEETTSEEEEEETT-SCEE--------------------------------------------------------
T ss_pred             CCEEEEEeCCCEEEEEcCC-CCEE--------------------------------------------------------
Confidence            9999999999999999953 3211                                                        


Q ss_pred             EEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEE
Q 014977          353 AQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSF  387 (415)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~  387 (415)
                      ..+.-+...+..++|+|+ ..|++++.||.|++|+.
T Consensus       502 ~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~  537 (577)
T 2ymu_A          502 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR  537 (577)
T ss_dssp             EEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred             EEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC
Confidence            123333456677899998 66778888999999985

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.2e-32  Score=255.30  Aligned_cols=248  Identities=16%  Similarity=0.160  Sum_probs=198.5

Q ss_pred             CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEE
Q 014977           40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII  118 (415)
Q Consensus        40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~v  118 (415)
                      ..+|...|.+++|+|++++|++|+ |+.++||++..........+.+|...+.++.|+|++..|++++.|     +.|++
T Consensus        57 ~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D-----~~v~i  131 (345)
T 3fm0_A           57 SEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRD-----KSVWV  131 (345)
T ss_dssp             CSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETT-----SCEEE
T ss_pred             ccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECC-----CeEEE
Confidence            368999999999999999999999 999999999876544445566888999999999999999999988     99999


Q ss_pred             EECCCCCE---EEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCce--eeeEEeccCCCcceEEEecCCCceEE
Q 014977          119 WDDHQSRC---IGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLK--LLHQIETLANLRGLCCLSHHSSTSVL  189 (415)
Q Consensus       119 wd~~~~~~---~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l  189 (415)
                      ||+.++..   +..+. |...|.+++|+|++.+++   .|+.|++||+.+++  +...+.+|..  .+.+++++|++.+|
T Consensus       132 wd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~--~v~~l~~sp~g~~l  209 (345)
T 3fm0_A          132 WEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHES--TVWSLAFDPSGQRL  209 (345)
T ss_dssp             EEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSS--CEEEEEECTTSSEE
T ss_pred             EECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCC--ceEEEEECCCCCEE
Confidence            99987643   44444 889999999999998887   69999999998765  3456777776  55666677778888


Q ss_pred             EEeCCccCeEEEEEcCC----------------cceEEEec-CccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCc--
Q 014977          190 ACPGLQRGQVRIEHFGL----------------NMIKLINA-HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT--  250 (415)
Q Consensus       190 ~~~g~~dg~v~i~~~~~----------------~~~~~~~~-~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~--  250 (415)
                      ++ |+.|++|++|+...                ..+..+.+ |...|.+++|+|++.+|++++.|+. |++|+...+.  
T Consensus       210 ~s-~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~-i~vw~~~~~~~~  287 (345)
T 3fm0_A          210 AS-CSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDA-IRVFQEDPNSDP  287 (345)
T ss_dssp             EE-EETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSC-EEEEEECTTSCT
T ss_pred             EE-EeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCe-EEEEEeCCCCCc
Confidence            76 67899999997521                12333444 8889999999999999999999999 9999987542  


Q ss_pred             --EEEEE---ecCCCcccEEEEEeCCCC-CEEEEEeCCCeEEEEEceecccC
Q 014977          251 --RLQEV---RRGVDRAEIYSIALSPNV-QWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       251 --~~~~~---~~~~~~~~v~~l~~spdg-~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                        ....+   ....|...|++++|+|++ .+||+++.||+|++|++.++++.
T Consensus       288 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~  339 (345)
T 3fm0_A          288 QQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL  339 (345)
T ss_dssp             TSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC----
T ss_pred             ceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCc
Confidence              11111   112278899999999998 49999999999999999998765

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.6e-32  Score=248.56  Aligned_cols=243  Identities=13%  Similarity=0.162  Sum_probs=205.2

Q ss_pred             cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~  117 (415)
                      ....|...|.+++|+|++++|++|+ |+.|++||+.+.+....  +..|...+.++.|+|++.++++++.|     +.|+
T Consensus        50 ~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~sgs~D-----~~v~  122 (304)
T 2ynn_A           50 SIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVD--FEAHPDYIRSIAVHPTKPYVLSGSDD-----LTVK  122 (304)
T ss_dssp             EEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEE--EECCSSCEEEEEECSSSSEEEEEETT-----SCEE
T ss_pred             EeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEE--EeCCCCcEEEEEEcCCCCEEEEECCC-----CeEE
Confidence            3457899999999999999999999 99999999998766544  44788899999999999999999988     9999


Q ss_pred             EEECCCCCE-EEEEE-ccCceeEEEEcC-CeEEEE---eCCeEEEEEcCCceeeeEEe-ccCCCcceEEEecCCCceEEE
Q 014977          118 IWDDHQSRC-IGEFA-FRSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDLKLLHQIE-TLANLRGLCCLSHHSSTSVLA  190 (415)
Q Consensus       118 vwd~~~~~~-~~~~~-~~~~i~~l~~~~-~~~~~~---~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~  190 (415)
                      +||++++.. ...+. |...|.+++|+| ++..++   .|+.|++||+.+++....+. .+...+..+.+.+.+++.+|+
T Consensus       123 lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~  202 (304)
T 2ynn_A          123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI  202 (304)
T ss_dssp             EEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEE
T ss_pred             EEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEE
Confidence            999988854 44555 899999999999 555555   69999999998877666654 344556677777777887887


Q ss_pred             EeCCccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEe
Q 014977          191 CPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIAL  269 (415)
Q Consensus       191 ~~g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~  269 (415)
                      + |+.|++|++|+... +.+..+.+|...|.+++|+|++.+|++++.||. |++||+.+++.+..+..  +...+++++|
T Consensus       203 s-~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~-i~iWd~~~~~~~~~~~~--~~~~~~~~~~  278 (304)
T 2ynn_A          203 T-ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGT-LKIWNSSTYKVEKTLNV--GLERSWCIAT  278 (304)
T ss_dssp             E-EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSC-EEEEETTTCCEEEEECC--SSSSEEEEEE
T ss_pred             E-EcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCe-EEEEECCCCceeeeccC--CCccEEEEEE
Confidence            6 67899999998764 667889999999999999999999999999999 99999999999999987  6778999999


Q ss_pred             CCCCC--EEEEEeCCCeEEEEEceec
Q 014977          270 SPNVQ--WLAVASDKGTVHIFSLRVR  293 (415)
Q Consensus       270 spdg~--~l~s~s~dg~i~vwd~~~~  293 (415)
                      +|++.  +|++|+.|| +.+|++.+.
T Consensus       279 ~~~~~~~~~asg~~~g-~~~~~~~~~  303 (304)
T 2ynn_A          279 HPTGRKNYIASGFDNG-FTVLSLGND  303 (304)
T ss_dssp             CTTCGGGCEEEEETTE-EEEEECC--
T ss_pred             CCCCCceEEEEecCCc-eEEEEeccC
Confidence            99875  577777666 888888754

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.9e-34  Score=270.42  Aligned_cols=239  Identities=11%  Similarity=0.092  Sum_probs=189.9

Q ss_pred             CCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEE
Q 014977           41 DVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIW  119 (415)
Q Consensus        41 ~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vw  119 (415)
                      ..+.+.|++++|+|++++|++|+ |+.|+||++.+........+..|...+.++.|++++.++++++.|     +.|++|
T Consensus         8 ~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d-----~~v~vw   82 (377)
T 3dwl_C            8 HILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQD-----RNAYVY   82 (377)
T ss_dssp             EECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETT-----SSEEEC
T ss_pred             ecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCC-----CeEEEE
Confidence            34677899999999999999998 999999999976423344566888999999999999999999988     999999


Q ss_pred             ECCCCC---EEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCce---eeeEEec-cCCCcceEEEecCCCceE
Q 014977          120 DDHQSR---CIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLK---LLHQIET-LANLRGLCCLSHHSSTSV  188 (415)
Q Consensus       120 d~~~~~---~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~  188 (415)
                      |+.+++   ....+. |...|.+++|+|++.+++   .|+.|++||+.+++   ....+.. |..  .+.++.+++++.+
T Consensus        83 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~  160 (377)
T 3dwl_C           83 EKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS--TILSLDWHPNNVL  160 (377)
T ss_dssp             ------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCS--CEEEEEECTTSSE
T ss_pred             EcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCC--CeEEEEEcCCCCE
Confidence            998877   444443 899999999999988777   68999999998876   3666665 665  5566666677778


Q ss_pred             EEEeCCccCeEEEEEcC-------------------CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC
Q 014977          189 LACPGLQRGQVRIEHFG-------------------LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG  249 (415)
Q Consensus       189 l~~~g~~dg~v~i~~~~-------------------~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~  249 (415)
                      |++ ++.|+.|++|+..                   ++.+..+ .|...|.+++|+|+|++|++++.|+. |++||+.++
T Consensus       161 l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~-i~iwd~~~~  237 (377)
T 3dwl_C          161 LAA-GCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSS-VTIAYPSAP  237 (377)
T ss_dssp             EEE-EESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTE-EC-CEECST
T ss_pred             EEE-EeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCc-EEEEECCCC
Confidence            876 6689999999974                   3344555 89999999999999999999999999 999999999


Q ss_pred             cE----EEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEcee
Q 014977          250 TR----LQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV  292 (415)
Q Consensus       250 ~~----~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~  292 (415)
                      +.    +..+..  |...|.+++|+|++++|++++.++.+ +|+...
T Consensus       238 ~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~  281 (377)
T 3dwl_C          238 EQPPRALITVKL--SQLPLRSLLWANESAIVAAGYNYSPI-LLQGNE  281 (377)
T ss_dssp             TSCEEECCCEEC--SSSCEEEEEEEETTEEEEEESSSSEE-EECCCC
T ss_pred             CCcceeeEeecC--CCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCC
Confidence            87    667777  77899999999999999999877755 777663

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.3e-32  Score=256.22  Aligned_cols=284  Identities=14%  Similarity=0.180  Sum_probs=224.5

Q ss_pred             CCCCCCceEEEEEeCC---C-C-EEEEEeCCcEEEEEccCCceeEEEe---ccCCCeeEEEEeeeCC----eEEEEecCC
Q 014977           40 SDVDEIELISVSWNQD---Y-G-CFAAGTSCGFRIYNCEPFKETFRRD---LKSGGFRIVEMLFRCN----ILALVGAGD  107 (415)
Q Consensus        40 ~~~h~~~V~~l~~sp~---g-~-~la~g~d~~v~iw~~~~~~~~~~~~---~~~~~~~~~~~~~~~~----~~~l~s~~~  107 (415)
                      ..+|...|++++|+|+   + . +++++.++.|+||++.+.+......   ...+...+.++.|+++    +.++++++.
T Consensus        14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~   93 (366)
T 3k26_A           14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS   93 (366)
T ss_dssp             ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred             ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence            4589999999999984   3 3 4445558899999998755433322   1135677999999988    788999888


Q ss_pred             CCCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcC-CeEEEE---eCCeEEEEEcCCceeeeEE---eccCCCcceEE
Q 014977          108 NSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDLKLLHQI---ETLANLRGLCC  179 (415)
Q Consensus       108 d~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~-~~~~~~---~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~  179 (415)
                      |     +.|++||+.+++.+..+. |...|.+++|+| ++.+++   .|+.|++||+.+++.+..+   ..|..  .+.+
T Consensus        94 d-----g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~v~~  166 (366)
T 3k26_A           94 R-----GIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD--EVLS  166 (366)
T ss_dssp             T-----CEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSS--CEEE
T ss_pred             C-----CEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccC--ceeE
Confidence            7     999999999999999998 999999999999 777776   5899999999999988887   45555  5666


Q ss_pred             EecCCCceEEEEeCCccCeEEEEEcCCcc-e----------------------------EEEecCccceEEEEeCCCCCE
Q 014977          180 LSHHSSTSVLACPGLQRGQVRIEHFGLNM-I----------------------------KLINAHDSHIACFTLTLDGLL  230 (415)
Q Consensus       180 ~~~~~~~~~l~~~g~~dg~v~i~~~~~~~-~----------------------------~~~~~~~~~i~~l~~sp~g~~  230 (415)
                      +.+++++.++++ ++.||.|++|+..... .                            .....|...|.+++|+  +++
T Consensus       167 ~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~  243 (366)
T 3k26_A          167 ADYDLLGEKIMS-CGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDL  243 (366)
T ss_dssp             EEECTTSSEEEE-EETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTE
T ss_pred             EEECCCCCEEEE-ecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCE
Confidence            666777778876 5689999999877522 1                            1223389999999998  779


Q ss_pred             EEEEeCCCcEEEEEECCCCcE--------------EEEEecCCCcccEEEEEeCCC--CCEEEEEeCCCeEEEEEceecc
Q 014977          231 LATASTRGTLIRIFNTVDGTR--------------LQEVRRGVDRAEIYSIALSPN--VQWLAVASDKGTVHIFSLRVRV  294 (415)
Q Consensus       231 l~s~s~dg~~I~vwd~~~~~~--------------~~~~~~~~~~~~v~~l~~spd--g~~l~s~s~dg~i~vwd~~~~~  294 (415)
                      |++++.|+. |++||+.+++.              +..+..  |...|.+++|+|+  +++|++++.||.|++||+++++
T Consensus       244 l~~~~~d~~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~  320 (366)
T 3k26_A          244 ILSKSCENA-IVCWKPGKMEDDIDKIKPSESNVTILGRFDY--SQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVED  320 (366)
T ss_dssp             EEEECSSSE-EEEEEESSTTCCGGGCCTTCCCEEEEEEEEC--SSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSS
T ss_pred             EEEEecCCE-EEEEeCCCccccccccccCCcchheeccccc--cCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCC
Confidence            999999999 99999987643              667776  7778999999999  9999999999999999999876


Q ss_pred             cCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeC--CCceEEEEecCC-C
Q 014977          295 VGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIP--EVTHFIAAFGSQ-N  371 (415)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~  371 (415)
                      ....                                                    ....+..+  ...+..++|+++ +
T Consensus       321 ~~~~----------------------------------------------------~~~~~~~~~~~~~v~~~~~s~~~~  348 (366)
T 3k26_A          321 PHKA----------------------------------------------------KCTTLTHHKCGAAIRQTSFSRDSS  348 (366)
T ss_dssp             GGGC----------------------------------------------------EEEEECCTTCCSCEEEEEECTTSS
T ss_pred             Cccc----------------------------------------------------cceEEcccccCCceEEEEeCCCCC
Confidence            4310                                                    00122222  356777899998 7


Q ss_pred             EEEEEEeCCcEEEEEEe
Q 014977          372 TVVIVSMDGSFYRCSFD  388 (415)
Q Consensus       372 ~i~~~~~dg~~~~~~~~  388 (415)
                      .|++++.||.|++|++.
T Consensus       349 ~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          349 ILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             EEEEEETTSEEEEEEC-
T ss_pred             eEEEEeCCCEEEEEEec
Confidence            78888889999999873

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=2.5e-33  Score=256.71  Aligned_cols=245  Identities=14%  Similarity=0.118  Sum_probs=192.1

Q ss_pred             cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC--CeEEEEecCCCCCCCCCe
Q 014977           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC--NILALVGAGDNSQYPPTK  115 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~d~~~~~~~  115 (415)
                      ...+|.+.|++++|+|+|++||+|+ |+.|+|||+.+........+.+|...|.++.|++  ++..|++++.|     ++
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D-----~~   82 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYD-----RK   82 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETT-----SC
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECC-----CE
Confidence            3568999999999999999999999 9999999998765444445668889999999975  47888899888     99


Q ss_pred             EEEEECCCCC--EEEEEE-ccCceeEEEEcCC--eEEEE---eCCeEEEEEcCCcee---eeEEeccCCCcceEEEecCC
Q 014977          116 VIIWDDHQSR--CIGEFA-FRSDVRSVKLSRD--RIVVV---LEHKIYVYSFVDLKL---LHQIETLANLRGLCCLSHHS  184 (415)
Q Consensus       116 i~vwd~~~~~--~~~~~~-~~~~i~~l~~~~~--~~~~~---~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~  184 (415)
                      |++||+++++  .+..+. |...|.+++|+|+  +.+++   .|+.|++||+..+..   ...+..|...+..+.++++.
T Consensus        83 v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  162 (316)
T 3bg1_A           83 VIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAV  162 (316)
T ss_dssp             EEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCC
T ss_pred             EEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcccc
Confidence            9999998874  555555 8899999999997  66666   699999999986532   33445566655555555541


Q ss_pred             ---------------CceEEEEeCCccCeEEEEEcCCc----ceEEEecCccceEEEEeCCCC----CEEEEEeCCCcEE
Q 014977          185 ---------------STSVLACPGLQRGQVRIEHFGLN----MIKLINAHDSHIACFTLTLDG----LLLATASTRGTLI  241 (415)
Q Consensus       185 ---------------~~~~l~~~g~~dg~v~i~~~~~~----~~~~~~~~~~~i~~l~~sp~g----~~l~s~s~dg~~I  241 (415)
                                     .+.+|+ +|+.|+.|++|+....    .+..+.+|...|.+++|+|++    .+|++++.|+. |
T Consensus       163 ~~~~~~~~~~~~~~~~~~~l~-sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~-v  240 (316)
T 3bg1_A          163 VPGSLIDHPSGQKPNYIKRFA-SGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGR-V  240 (316)
T ss_dssp             CC------CCSCCCCCCCBEE-CCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCE-E
T ss_pred             CCccccccccccCccccceEE-EecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCe-E
Confidence                           124555 4789999999988642    556678999999999999987    89999999999 9


Q ss_pred             EEEECCCC---c-EEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEcee
Q 014977          242 RIFNTVDG---T-RLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV  292 (415)
Q Consensus       242 ~vwd~~~~---~-~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~  292 (415)
                      +|||+.+.   + ....+..  |...|.+++|+|++++|++++.|++|+||+...
T Consensus       241 ~iw~~~~~~~~~~~~~~~~~--~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          241 FIWTCDDASSNTWSPKLLHK--FNDVVWHVSWSITANILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             EEEECSSTTCCCCBCCEEEE--CSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred             EEEEccCccccchhhhhhhc--CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence            99998763   1 1223444  677899999999999999999999999999863

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=5.8e-32  Score=248.01  Aligned_cols=241  Identities=9%  Similarity=0.175  Sum_probs=200.0

Q ss_pred             cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~  117 (415)
                      ...+|...|.+++|+|++++|++|+ |+.|+|||+.+.+....  +.+|...+.++.|++++..+++++.|     +.|+
T Consensus        60 ~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~s~D-----~~i~  132 (319)
T 3frx_A           60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQR--FVGHKSDVMSVDIDKKASMIISGSRD-----KTIK  132 (319)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE--EECCSSCEEEEEECTTSCEEEEEETT-----SCEE
T ss_pred             EEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEE--EccCCCcEEEEEEcCCCCEEEEEeCC-----CeEE
Confidence            3568999999999999999999999 99999999998665443  44888899999999999999999988     9999


Q ss_pred             EEECCCCCEEEEEE-ccCceeEEEEcCCeE------EEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCce
Q 014977          118 IWDDHQSRCIGEFA-FRSDVRSVKLSRDRI------VVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS  187 (415)
Q Consensus       118 vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~------~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (415)
                      +||++ ++++..+. |...|.++.+.|...      .++   .|+.|++||+.+++....+.+|..  .+.++.++|++.
T Consensus       133 vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~--~v~~~~~sp~g~  209 (319)
T 3frx_A          133 VWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS--NINTLTASPDGT  209 (319)
T ss_dssp             EEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCS--CEEEEEECTTSS
T ss_pred             EEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCC--cEEEEEEcCCCC
Confidence            99986 45566655 899999999998643      444   699999999999998888888887  455566667777


Q ss_pred             EEEEeCCccCeEEEEEcCCcc-eEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecC------CC
Q 014977          188 VLACPGLQRGQVRIEHFGLNM-IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRG------VD  260 (415)
Q Consensus       188 ~l~~~g~~dg~v~i~~~~~~~-~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~------~~  260 (415)
                      +|++ |+.||.|++|+..... +..+. +...|.+++|+|++.+|++++.+ . +++|++..+..+..+...      .+
T Consensus       210 ~l~s-~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~la~~~~~-~-i~v~~~~~~~~~~~~~~~~~~~~~~~  285 (319)
T 3frx_A          210 LIAS-AGKDGEIMLWNLAAKKAMYTLS-AQDEVFSLAFSPNRYWLAAATAT-G-IKVFSLDPQYLVDDLRPEFAGYSKAA  285 (319)
T ss_dssp             EEEE-EETTCEEEEEETTTTEEEEEEE-CCSCEEEEEECSSSSEEEEEETT-E-EEEEEETTEEEEEEECCCCTTCCGGG
T ss_pred             EEEE-EeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEcCCCCEEEEEcCC-C-cEEEEeCcCeeeeccCccccccccCc
Confidence            8876 6689999999987654 44444 55789999999999999988754 5 999999888777766532      13


Q ss_pred             cccEEEEEeCCCCCEEEEEeCCCeEEEEEceec
Q 014977          261 RAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR  293 (415)
Q Consensus       261 ~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~  293 (415)
                      ...+.+++|+|||++|++|+.||.|+|||+.++
T Consensus       286 ~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          286 EPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             CCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             CcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence            457899999999999999999999999999875

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-32  Score=251.25  Aligned_cols=242  Identities=17%  Similarity=0.263  Sum_probs=186.0

Q ss_pred             CCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCc-----eeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCe
Q 014977           42 VDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFK-----ETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK  115 (415)
Q Consensus        42 ~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~  115 (415)
                      +|...|.+++|+|++++|++|+ |+.|+||+++...     ......+.+|...+.++.|+|++.+|++++.|     +.
T Consensus        56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D-----~~  130 (330)
T 2hes_X           56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRD-----KS  130 (330)
T ss_dssp             CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETT-----SC
T ss_pred             CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCC-----CE
Confidence            4999999999999999999999 9999999985321     12233456788899999999999999999988     99


Q ss_pred             EEEEECCCC----CEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCc--eeeeEEeccCCCcceEEEecCCC
Q 014977          116 VIIWDDHQS----RCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDL--KLLHQIETLANLRGLCCLSHHSS  185 (415)
Q Consensus       116 i~vwd~~~~----~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~  185 (415)
                      |++||+...    +++..+. |...|.+++|+|++.+++   .|+.|++||+.++  +++..+.+|...+..++++++..
T Consensus       131 v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  210 (330)
T 2hes_X          131 VWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEG  210 (330)
T ss_dssp             EEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSS
T ss_pred             EEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCC
Confidence            999998432    4556666 889999999999998887   6999999998765  67788888888665555655544


Q ss_pred             ceEEEEeCCccCeEEEEEcCCc---------ceEEEec-CccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCc--EEE
Q 014977          186 TSVLACPGLQRGQVRIEHFGLN---------MIKLINA-HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT--RLQ  253 (415)
Q Consensus       186 ~~~l~~~g~~dg~v~i~~~~~~---------~~~~~~~-~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~--~~~  253 (415)
                      +..|++ |+.|++|++|+....         ....+.. |...|.+++|++++ +|++++.||. |+|||..+++  ...
T Consensus       211 ~~~l~s-~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~-v~iw~~~~~~~~~~~  287 (330)
T 2hes_X          211 VFRLCS-GSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGV-LAVYEEVDGEWKVFA  287 (330)
T ss_dssp             SCEEEE-EETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSC-EEEEEEETTEEEEEE
T ss_pred             eeEEEE-EeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCE-EEEEEcCCCceEEEe
Confidence            666665 778999999987542         2333444 89999999999766 7999999999 9999998774  232


Q ss_pred             EE-ecCCCcc-cEEEEEeCC--CCCEEEEEeCCCeEEEEEceec
Q 014977          254 EV-RRGVDRA-EIYSIALSP--NVQWLAVASDKGTVHIFSLRVR  293 (415)
Q Consensus       254 ~~-~~~~~~~-~v~~l~~sp--dg~~l~s~s~dg~i~vwd~~~~  293 (415)
                      .. ..  |.. .|.+++|+|  ++++|++++.||+|+||++++.
T Consensus       288 ~~~~~--h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~~  329 (330)
T 2hes_X          288 KRALC--HGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEKA  329 (330)
T ss_dssp             EESCT--TTTSCEEEEEEC-----CCEEEEETTSEEEEEEC---
T ss_pred             ccccc--cccceEEEEEEecCCCceEEEEecCCCcEEEEEeccC
Confidence            32 23  655 899999999  7899999999999999998753

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.7e-33  Score=269.55  Aligned_cols=287  Identities=12%  Similarity=0.048  Sum_probs=214.7

Q ss_pred             CCCCCCceEEEEEeC-CCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCeE
Q 014977           40 SDVDEIELISVSWNQ-DYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKV  116 (415)
Q Consensus        40 ~~~h~~~V~~l~~sp-~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~i  116 (415)
                      ..+|...|++|+|+| ++.+||+|+ ||.|+|||+++.+......+.+|...|.++.|+| ++..|++++.|     ++|
T Consensus       115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D-----~~v  189 (435)
T 4e54_B          115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSME-----GTT  189 (435)
T ss_dssp             EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSS-----SCE
T ss_pred             CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCC-----CEE
Confidence            456888999999999 567999999 9999999998766555555668889999999997 67888999988     999


Q ss_pred             EEEECCCCCEEEEEE---ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEE
Q 014977          117 IIWDDHQSRCIGEFA---FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLA  190 (415)
Q Consensus       117 ~vwd~~~~~~~~~~~---~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  190 (415)
                      ++||++++.......   +...+.+++|+|++.+++   .|+.|++||++ ++.+..+..|...+  .++.++|++..++
T Consensus       190 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v--~~v~~~p~~~~~~  266 (435)
T 4e54_B          190 RLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKV--THVALNPCCDWFL  266 (435)
T ss_dssp             EEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCE--EEEEECTTCSSEE
T ss_pred             EEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceE--EeeeecCCCceEE
Confidence            999987665433333   245678999999998887   68999999986 45667777887754  4555555554444


Q ss_pred             EeCCccCeEEEEEcCCc----ceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCc----c
Q 014977          191 CPGLQRGQVRIEHFGLN----MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDR----A  262 (415)
Q Consensus       191 ~~g~~dg~v~i~~~~~~----~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~----~  262 (415)
                      ++|+.|+.|++|+....    ......+|...|++++|+|+|++|++++.|+. |+|||+.+++....+..+.+.    .
T Consensus       267 ~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~-i~iwd~~~~~~~~~~~~~~~~~~~~~  345 (435)
T 4e54_B          267 ATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSE-IRVYSASQWDCPLGLIPHPHRHFQHL  345 (435)
T ss_dssp             EEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSC-EEEEESSSSSSEEEECCCCCCCCSSS
T ss_pred             EEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCE-EEEEECCCCccceEEecccccccccc
Confidence            45778999999987642    23334679999999999999999999999999 999999999887777653221    1


Q ss_pred             cEEEEEeCCCCCEEEEEe------------CCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCC
Q 014977          263 EIYSIALSPNVQWLAVAS------------DKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGAN  330 (415)
Q Consensus       263 ~v~~l~~spdg~~l~s~s------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (415)
                      .+....|+|++.+++++.            .++.|++||+.+++....+...                            
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~----------------------------  397 (435)
T 4e54_B          346 TPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDP----------------------------  397 (435)
T ss_dssp             CCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCS----------------------------
T ss_pred             eeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCC----------------------------
Confidence            234456777777776654            2357999999887643210000                            


Q ss_pred             CCCcccccccccCcccccccceEEEEeCCCceEEEEecCCCEEEEEEeCCcEEEEEEec
Q 014977          331 PGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dg~~~~~~~~~  389 (415)
                                                .......+++|+|++.++++++|+.|++|++..
T Consensus       398 --------------------------~~~~v~s~~~fspdg~~lasg~d~~i~iW~~~~  430 (435)
T 4e54_B          398 --------------------------ESSGISSLNEFNPMGDTLASAMGYHILIWSQQE  430 (435)
T ss_dssp             --------------------------SCCCCCCEEEECTTSSCEEEECSSEEEECCCC-
T ss_pred             --------------------------CCCcEEEEEEECCCCCEEEEEcCCcEEEEECCc
Confidence                                      001233456899998888888899999998865

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.9e-32  Score=255.87  Aligned_cols=279  Identities=15%  Similarity=0.182  Sum_probs=226.0

Q ss_pred             CCCCCceEEEEEeCCCC-EEEEEe-CCcEEEEEc----cCCc------eeEEEe--ccC------CCeeEEEEeeeCCeE
Q 014977           41 DVDEIELISVSWNQDYG-CFAAGT-SCGFRIYNC----EPFK------ETFRRD--LKS------GGFRIVEMLFRCNIL  100 (415)
Q Consensus        41 ~~h~~~V~~l~~sp~g~-~la~g~-d~~v~iw~~----~~~~------~~~~~~--~~~------~~~~~~~~~~~~~~~  100 (415)
                      ..|.+.|.+++|+|+++ +||+|+ |+.|++|++    .+.+      ......  +..      +...+.++.|++++.
T Consensus        42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  121 (425)
T 1r5m_A           42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN  121 (425)
T ss_dssp             EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred             eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence            45668999999999999 999999 999999999    7655      222211  111      466899999999999


Q ss_pred             EEEecCCCCCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCC--
Q 014977          101 ALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANL--  174 (415)
Q Consensus       101 ~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~--  174 (415)
                      ++++++.+     +.|++|| .+++.+..+. |...|.+++|+|++.+++   .|+.|++||+.+++.+..+..+...  
T Consensus       122 ~l~~~~~d-----g~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  195 (425)
T 1r5m_A          122 SIVTGVEN-----GELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGS  195 (425)
T ss_dssp             EEEEEETT-----SCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-----
T ss_pred             EEEEEeCC-----CeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCcc
Confidence            99999887     9999999 7788888887 899999999999998777   6899999999999998888766654  


Q ss_pred             -------------cceEEEecCCCceEEEEeCCccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCCEEEEEeCCCcE
Q 014977          175 -------------RGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTL  240 (415)
Q Consensus       175 -------------~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~  240 (415)
                                   +..+.+.  +++. +++ ++.++.|++|+... +.+..+..|...|.+++|+|++++|++++.|+. 
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~--~~~~-~~~-~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-  270 (425)
T 1r5m_A          196 SINAENHSGDGSLGVDVEWV--DDDK-FVI-PGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGT-  270 (425)
T ss_dssp             ----------CCCBSCCEEE--ETTE-EEE-ECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSC-
T ss_pred             ceeeccccCCcceeeEEEEc--CCCE-EEE-EcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCE-
Confidence                         4444444  4454 444 66899999988765 556778899999999999999999999999999 


Q ss_pred             EEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCc
Q 014977          241 IRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFD  320 (415)
Q Consensus       241 I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (415)
                      |++||+.+++.+..+..  |...|.+++|+|++ +|++++.|+.|++||+++++..                        
T Consensus       271 i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~------------------------  323 (425)
T 1r5m_A          271 LRIWHGGNGNSQNCFYG--HSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLL------------------------  323 (425)
T ss_dssp             EEEECSSSBSCSEEECC--CSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEE------------------------
T ss_pred             EEEEECCCCccceEecC--CCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEe------------------------
Confidence            99999999998888877  77899999999999 9999999999999999876632                        


Q ss_pred             ccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977          321 TLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~  389 (415)
                                                      ..+.........++|+++ +.+++++.||.|++|++..
T Consensus       324 --------------------------------~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~  361 (425)
T 1r5m_A          324 --------------------------------ALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKK  361 (425)
T ss_dssp             --------------------------------EEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHH
T ss_pred             --------------------------------EecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCC
Confidence                                            123333456677899998 6778888899999999975

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=6.3e-32  Score=252.42  Aligned_cols=197  Identities=16%  Similarity=0.146  Sum_probs=159.6

Q ss_pred             EEEEeeeCCeEEE--EecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceee
Q 014977           90 IVEMLFRCNILAL--VGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLL  165 (415)
Q Consensus        90 ~~~~~~~~~~~~l--~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~  165 (415)
                      +..++|+||+.++  ++++.|     +.|+|||+.+++.+..+.|...|.+++|+|++++++  .++.+.+|+..+++.+
T Consensus       136 ~~~v~fSpDg~~la~as~~~d-----~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~  210 (365)
T 4h5i_A          136 TKLVYISREGTVAAIASSKVP-----AIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCI  210 (365)
T ss_dssp             EEEEEECTTSSCEEEEESCSS-----CEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEE
T ss_pred             EEEEEEcCCCCEEEEEECCCC-----CEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcce
Confidence            4567889988665  455566     999999999999999999999999999999999988  6788889988887766


Q ss_pred             eEEeccCCCcceEEEecCCCceEEEEeCCccC----eEEEEEcCCc-----ceEEEecCccceEEEEeCCCCCEEEEEeC
Q 014977          166 HQIETLANLRGLCCLSHHSSTSVLACPGLQRG----QVRIEHFGLN-----MIKLINAHDSHIACFTLTLDGLLLATAST  236 (415)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg----~v~i~~~~~~-----~~~~~~~~~~~i~~l~~sp~g~~l~s~s~  236 (415)
                      ...........+.++.++|++.+++++ +.++    .+++|+....     ....+.+|...|++++|+|+|++||+|+.
T Consensus       211 ~~~~~~~~~~~v~~v~fspdg~~l~~~-s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~  289 (365)
T 4h5i_A          211 ARKTDFDKNWSLSKINFIADDTVLIAA-SLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASN  289 (365)
T ss_dssp             EEECCCCTTEEEEEEEEEETTEEEEEE-EESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEET
T ss_pred             eeeecCCCCCCEEEEEEcCCCCEEEEE-ecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcC
Confidence            544333333355666667777777764 3454    4555765442     23456789999999999999999999999


Q ss_pred             CCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977          237 RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (415)
Q Consensus       237 dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  294 (415)
                      |+. |+|||+++++++..+..+ |...|++++|+|||++||+++.|++|+|||+..+.
T Consensus       290 D~~-V~iwd~~~~~~~~~~~~g-H~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~  345 (365)
T 4h5i_A          290 DNS-IALVKLKDLSMSKIFKQA-HSFAITEVTISPDSTYVASVSAANTIHIIKLPLNY  345 (365)
T ss_dssp             TSC-EEEEETTTTEEEEEETTS-SSSCEEEEEECTTSCEEEEEETTSEEEEEECCTTT
T ss_pred             CCE-EEEEECCCCcEEEEecCc-ccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCC
Confidence            999 999999999999886433 88899999999999999999999999999997554

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=6.5e-32  Score=251.30  Aligned_cols=239  Identities=14%  Similarity=0.203  Sum_probs=200.9

Q ss_pred             CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCce----eEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCC
Q 014977           40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE----TFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPT  114 (415)
Q Consensus        40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~  114 (415)
                      ...|...|.+++|+|+|.+|++|+ |+.+++|++.....    .....+..|...+.++.|++++..+++++.|     +
T Consensus       102 ~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D-----~  176 (354)
T 2pbi_B          102 VTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGD-----G  176 (354)
T ss_dssp             EECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETT-----S
T ss_pred             EecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCC-----C
Confidence            345778899999999999999999 99999999864210    1112233678889999999999888888887     9


Q ss_pred             eEEEEECCCCCEEEEEE-ccCceeEEEEcC--CeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceE
Q 014977          115 KVIIWDDHQSRCIGEFA-FRSDVRSVKLSR--DRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSV  188 (415)
Q Consensus       115 ~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~--~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (415)
                      .|++||+++++.+..+. |...|.+++++|  ++.+++   .|+.|++||+++++++..+..|...  +.++.++|++.+
T Consensus       177 ~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~--v~~v~~~p~~~~  254 (354)
T 2pbi_B          177 TCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESD--VNSVRYYPSGDA  254 (354)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSC--EEEEEECTTSSE
T ss_pred             cEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCC--eEEEEEeCCCCE
Confidence            99999999999999988 899999999987  455666   6999999999999999999888874  455555666677


Q ss_pred             EEEeCCccCeEEEEEcCCcc-eEEEecC--ccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEE
Q 014977          189 LACPGLQRGQVRIEHFGLNM-IKLINAH--DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIY  265 (415)
Q Consensus       189 l~~~g~~dg~v~i~~~~~~~-~~~~~~~--~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~  265 (415)
                      +++ |+.|++|++|+.+... +..+..+  ...+.+++|+|+|++|++++.|+. |++||+.+++.+..+.+  |...|.
T Consensus       255 l~s-~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~-i~vwd~~~~~~~~~l~~--h~~~v~  330 (354)
T 2pbi_B          255 FAS-GSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYT-INVWDVLKGSRVSILFG--HENRVS  330 (354)
T ss_dssp             EEE-EETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSC-EEEEETTTCSEEEEECC--CSSCEE
T ss_pred             EEE-EeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCc-EEEEECCCCceEEEEEC--CCCcEE
Confidence            776 6789999999987643 3334332  347889999999999999999999 99999999999988887  888999


Q ss_pred             EEEeCCCCCEEEEEeCCCeEEEEE
Q 014977          266 SIALSPNVQWLAVASDKGTVHIFS  289 (415)
Q Consensus       266 ~l~~spdg~~l~s~s~dg~i~vwd  289 (415)
                      +++|+|+|++|++++.||+|+||+
T Consensus       331 ~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          331 TLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EEEECCCCCEEEEEcCCCCEEecC
Confidence            999999999999999999999995

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.4e-32  Score=261.39  Aligned_cols=277  Identities=10%  Similarity=0.039  Sum_probs=217.7

Q ss_pred             CceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCC
Q 014977           45 IELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ  123 (415)
Q Consensus        45 ~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~  123 (415)
                      ..+++++|+|++++|++++ |+.+++|++.+.....  .+..+ .......+++++..+++++.|     +.|++||+.+
T Consensus        57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~--~~~~~-~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~  128 (420)
T 3vl1_A           57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK--MLKRA-DYTAVDTAKLQMRRFILGTTE-----GDIKVLDSNF  128 (420)
T ss_dssp             BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT--TSCSC-CEEEEEEECSSSCEEEEEETT-----SCEEEECTTS
T ss_pred             ccccceeeeecCCeEEEEEcCCcEEEEEecccceee--EEecC-CceEEEEEecCCCEEEEEECC-----CCEEEEeCCC
Confidence            3456899999999999999 9999999998644322  22233 334445678899899999887     9999999999


Q ss_pred             CCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeE
Q 014977          124 SRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQV  199 (415)
Q Consensus       124 ~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v  199 (415)
                      ++....+. |...|.+++|+|++.+++   .|+.|++||+.+++.+..+..|...+  .++.+++++.+|++ ++.|+.|
T Consensus       129 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v--~~~~~~~~~~~l~s-~~~d~~v  205 (420)
T 3vl1_A          129 NLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATV--TDIAIIDRGRNVLS-ASLDGTI  205 (420)
T ss_dssp             CEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCE--EEEEEETTTTEEEE-EETTSCE
T ss_pred             cceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcE--EEEEEcCCCCEEEE-EcCCCcE
Confidence            98887764 899999999999998877   68999999999999999998888744  45555556677775 6689999


Q ss_pred             EEEEcCC-cceEEEec---Cc---------------------cceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEE
Q 014977          200 RIEHFGL-NMIKLINA---HD---------------------SHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQE  254 (415)
Q Consensus       200 ~i~~~~~-~~~~~~~~---~~---------------------~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~  254 (415)
                      ++|+... +.+..+..   |.                     ..+.+++|+|+|++|++++.||. |++||+++++.+..
T Consensus       206 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~i~d~~~~~~~~~  284 (420)
T 3vl1_A          206 RLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGV-ITVHNVFSKEQTIQ  284 (420)
T ss_dssp             EEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSC-EEEEETTTCCEEEE
T ss_pred             EEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCe-EEEEECCCCceeEE
Confidence            9998764 45555554   22                     44555666899999999999999 99999999998877


Q ss_pred             EecCCCcccEEEEEeCCCCC-EEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCC
Q 014977          255 VRRGVDRAEIYSIALSPNVQ-WLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGS  333 (415)
Q Consensus       255 ~~~~~~~~~v~~l~~spdg~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (415)
                      +... |...|.+++|+|+++ +|++++.||.|++||+++++...                                    
T Consensus       285 ~~~~-~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~------------------------------------  327 (420)
T 3vl1_A          285 LPSK-FTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPV------------------------------------  327 (420)
T ss_dssp             ECCT-TSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCS------------------------------------
T ss_pred             cccc-cCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCch------------------------------------
Confidence            7653 677999999999999 99999999999999999876321                                    


Q ss_pred             cccccccccCcccccccceEEEEe-CCCceEEEEecCCCEEEEEEeCCcEEEEEEec
Q 014977          334 SLSFMRGVLPKYFSSEWSFAQFHI-PEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~dg~~~~~~~~~  389 (415)
                                         ..+.. .......+.+.+.+.+++++.||.+++|.+..
T Consensus       328 -------------------~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~  365 (420)
T 3vl1_A          328 -------------------GEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISD  365 (420)
T ss_dssp             -------------------EEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECC
T ss_pred             -------------------hhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccC
Confidence                               12232 22344555555446677777799999999976

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-33  Score=266.26  Aligned_cols=248  Identities=13%  Similarity=0.184  Sum_probs=206.3

Q ss_pred             CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCC--ceeEEEeccCCCeeEEEEeeeCC-eEEEEecCCCCCCCCCe
Q 014977           40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPF--KETFRRDLKSGGFRIVEMLFRCN-ILALVGAGDNSQYPPTK  115 (415)
Q Consensus        40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~~~~~~  115 (415)
                      ...|...|.+++|+|++++|++|+ |+.|++|++...  .......+..|...+.++.|+++ +.++++++.|     +.
T Consensus        63 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-----g~  137 (416)
T 2pm9_A           63 SLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNN-----GE  137 (416)
T ss_dssp             CCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSS-----SC
T ss_pred             EEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCC-----Ce
Confidence            346889999999999999999998 999999999862  12233345578889999999998 7888888887     99


Q ss_pred             EEEEECCCCC------EEEEE----EccCceeEEEEcCC-eEEEE---eCCeEEEEEcCCceeeeEEeccCC----Ccce
Q 014977          116 VIIWDDHQSR------CIGEF----AFRSDVRSVKLSRD-RIVVV---LEHKIYVYSFVDLKLLHQIETLAN----LRGL  177 (415)
Q Consensus       116 i~vwd~~~~~------~~~~~----~~~~~i~~l~~~~~-~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~----~~~~  177 (415)
                      |++||+.+++      ....+    .|...|.+++|+|+ +.+++   .|+.|++||+++++.+..+..+..    ...+
T Consensus       138 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v  217 (416)
T 2pm9_A          138 IFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQL  217 (416)
T ss_dssp             EEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCE
T ss_pred             EEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCce
Confidence            9999998886      33333    37889999999998 55555   699999999999999888876521    2245


Q ss_pred             EEEecCCCc-eEEEEeCCccC---eEEEEEcCC--cceEEEe-cCccceEEEEeCC-CCCEEEEEeCCCcEEEEEECCCC
Q 014977          178 CCLSHHSST-SVLACPGLQRG---QVRIEHFGL--NMIKLIN-AHDSHIACFTLTL-DGLLLATASTRGTLIRIFNTVDG  249 (415)
Q Consensus       178 ~~~~~~~~~-~~l~~~g~~dg---~v~i~~~~~--~~~~~~~-~~~~~i~~l~~sp-~g~~l~s~s~dg~~I~vwd~~~~  249 (415)
                      .++.+++++ .++++ ++.++   .|++|+...  ..+..+. +|...|.+++|+| ++++|++++.|+. |++||++++
T Consensus       218 ~~~~~~~~~~~~l~~-~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~-v~~wd~~~~  295 (416)
T 2pm9_A          218 SVVEWHPKNSTRVAT-ATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNT-VLLWNPESA  295 (416)
T ss_dssp             EEEEECSSCTTEEEE-EECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSE-EEEECSSSC
T ss_pred             EEEEECCCCCCEEEE-EECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCC-EEEeeCCCC
Confidence            666666665 35554 66787   999999875  4566777 8999999999999 9999999999999 999999999


Q ss_pred             cEEEEEecCCCcccEEEEEeCCCC-CEEEEEeCCCeEEEEEceecccC
Q 014977          250 TRLQEVRRGVDRAEIYSIALSPNV-QWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       250 ~~~~~~~~~~~~~~v~~l~~spdg-~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                      +.+..+..  |...|.+++|+|++ .+|++++.||.|++|++.+.+..
T Consensus       296 ~~~~~~~~--~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~  341 (416)
T 2pm9_A          296 EQLSQFPA--RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNT  341 (416)
T ss_dssp             CEEEEEEC--SSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCS
T ss_pred             ccceeecC--CCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCC
Confidence            99999988  78899999999999 89999999999999999988754

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=6.9e-32  Score=248.90  Aligned_cols=247  Identities=16%  Similarity=0.188  Sum_probs=200.2

Q ss_pred             cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCce--eEEEeccCCCeeEEEEeeeC--CeEEEEecCCCCCCCC
Q 014977           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE--TFRRDLKSGGFRIVEMLFRC--NILALVGAGDNSQYPP  113 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~d~~~~~  113 (415)
                      ...+|.+.|++++|+|++++|++|+ |+.|+||++.+...  .....+..|...+.++.|++  ++.++++++.|     
T Consensus         6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~d-----   80 (351)
T 3f3f_A            6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYD-----   80 (351)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETT-----
T ss_pred             cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCC-----
Confidence            4678999999999999999999999 99999999986532  23334557888999999998  58888888887     


Q ss_pred             CeEEEEECCCC---------CEEEEEE-ccCceeEEEEcCC--eEEEE---eCCeEEEEEcCCceeeeEEe---------
Q 014977          114 TKVIIWDDHQS---------RCIGEFA-FRSDVRSVKLSRD--RIVVV---LEHKIYVYSFVDLKLLHQIE---------  169 (415)
Q Consensus       114 ~~i~vwd~~~~---------~~~~~~~-~~~~i~~l~~~~~--~~~~~---~d~~i~iwd~~~~~~~~~~~---------  169 (415)
                      +.|++||+.++         +.+..+. |...|.+++|+|+  +.+++   .|+.|++||+.+++.+..+.         
T Consensus        81 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  160 (351)
T 3f3f_A           81 KTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLS  160 (351)
T ss_dssp             SCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCS
T ss_pred             CeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccc
Confidence            99999999887         4466665 8899999999998  77776   68999999998876554433         


Q ss_pred             ----ccCCCcceEEEecCCC---ceEEEEeCCccCeEEEEEcCCcc---eEEEecCccceEEEEeCCCC----CEEEEEe
Q 014977          170 ----TLANLRGLCCLSHHSS---TSVLACPGLQRGQVRIEHFGLNM---IKLINAHDSHIACFTLTLDG----LLLATAS  235 (415)
Q Consensus       170 ----~~~~~~~~~~~~~~~~---~~~l~~~g~~dg~v~i~~~~~~~---~~~~~~~~~~i~~l~~sp~g----~~l~s~s  235 (415)
                          .+..  .+.++.++|+   +..+++ ++.++.+.+|......   +..+.+|...|.+++|+|++    ++|++++
T Consensus       161 ~~~~~~~~--~~~~~~~~p~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~  237 (351)
T 3f3f_A          161 IPPANHLQ--SDFCLSWCPSRFSPEKLAV-SALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGC  237 (351)
T ss_dssp             CCCSSCSC--CCEEEEECCCSSSCCEEEE-EETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEE
T ss_pred             cccCCccc--ceeEEEeccCCCCCcEEEE-ecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEc
Confidence                2333  4455555554   556665 5678888776655543   55667899999999999998    8999999


Q ss_pred             CCCcEEEEEECCCC----------------------------------------------cEEEEEecCCCcccEEEEEe
Q 014977          236 TRGTLIRIFNTVDG----------------------------------------------TRLQEVRRGVDRAEIYSIAL  269 (415)
Q Consensus       236 ~dg~~I~vwd~~~~----------------------------------------------~~~~~~~~~~~~~~v~~l~~  269 (415)
                      .||. |++||++.+                                              +.+..+.+  |...|++++|
T Consensus       238 ~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~  314 (351)
T 3f3f_A          238 KDGR-IRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDD--HNGEVWSVSW  314 (351)
T ss_dssp             TTSC-EEEEEEEECC---------------------------------------CCSEEEEEEEEECT--TSSCEEEEEE
T ss_pred             CCCe-EEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEec--ccccEEEEEE
Confidence            9999 999999875                                              45556666  7889999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEEceecccC
Q 014977          270 SPNVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       270 spdg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                      +|++++|++++.||.|+||++.+++..
T Consensus       315 s~~~~~l~s~~~dg~v~iw~~~~~~~~  341 (351)
T 3f3f_A          315 NLTGTILSSAGDDGKVRLWKATYSNEF  341 (351)
T ss_dssp             CSSSCCEEEEETTSCEEEEEECTTSCE
T ss_pred             cCCCCEEEEecCCCcEEEEecCcCcch
Confidence            999999999999999999999987643

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.4e-32  Score=251.56  Aligned_cols=247  Identities=14%  Similarity=0.146  Sum_probs=201.7

Q ss_pred             cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCC--eEEEEecCCCCCCCCCe
Q 014977           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCN--ILALVGAGDNSQYPPTK  115 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~s~~~d~~~~~~~  115 (415)
                      ...+|.+.|++++|+|++++|++|+ |+.|+||+++.........+..|...+.++.|+++  +.++++++.|     +.
T Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-----g~   80 (379)
T 3jrp_A            6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD-----GK   80 (379)
T ss_dssp             CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT-----SC
T ss_pred             EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC-----CE
Confidence            4678999999999999999999999 99999999985444444456678889999999876  8888898887     99


Q ss_pred             EEEEECCCCC--EEEEEE-ccCceeEEEEcCC--eEEEE---eCCeEEEEEcCCcee--eeEEeccCCCcceEEEecCC-
Q 014977          116 VIIWDDHQSR--CIGEFA-FRSDVRSVKLSRD--RIVVV---LEHKIYVYSFVDLKL--LHQIETLANLRGLCCLSHHS-  184 (415)
Q Consensus       116 i~vwd~~~~~--~~~~~~-~~~~i~~l~~~~~--~~~~~---~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~-  184 (415)
                      |++||+.+++  .+..+. |...|.+++|+|+  +.+++   .|+.|++||+.++..  ...+..|..  .+.++.++| 
T Consensus        81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~--~v~~~~~~~~  158 (379)
T 3jrp_A           81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI--GVNSASWAPA  158 (379)
T ss_dssp             EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTT--CEEEEEECCC
T ss_pred             EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCC--ceEEEEEcCc
Confidence            9999999987  555555 8899999999998  76666   699999999987743  334455655  455555555 


Q ss_pred             ------------CceEEEEeCCccCeEEEEEcCCc-----ceEEEecCccceEEEEeCCC---CCEEEEEeCCCcEEEEE
Q 014977          185 ------------STSVLACPGLQRGQVRIEHFGLN-----MIKLINAHDSHIACFTLTLD---GLLLATASTRGTLIRIF  244 (415)
Q Consensus       185 ------------~~~~l~~~g~~dg~v~i~~~~~~-----~~~~~~~~~~~i~~l~~sp~---g~~l~s~s~dg~~I~vw  244 (415)
                                  ++.++++ ++.|+.|++|+....     ....+.+|...|.+++|+|+   +++|++++.||. |++|
T Consensus       159 ~~~~~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~-i~iw  236 (379)
T 3jrp_A          159 TIEEDGEHNGTKESRKFVT-GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT-CIIW  236 (379)
T ss_dssp             C----------CTTCEEEE-EETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC-EEEE
T ss_pred             cccccccccCCCCCCEEEE-EeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCE-EEEE
Confidence                        4667766 668999999987642     34567789999999999999   899999999999 9999


Q ss_pred             ECCCCc---EEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977          245 NTVDGT---RLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (415)
Q Consensus       245 d~~~~~---~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  294 (415)
                      |+.++.   ....+....+...|.+++|+|++++|++++.||.|++|++..+.
T Consensus       237 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~  289 (379)
T 3jrp_A          237 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG  289 (379)
T ss_dssp             EESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred             eCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence            998874   33333333367789999999999999999999999999999654

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.2e-32  Score=259.09  Aligned_cols=247  Identities=13%  Similarity=0.186  Sum_probs=198.8

Q ss_pred             CCCCCceEEEEEeC-CCCEEEEEe-CCcEEEEEccC---Ccee-EEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCC
Q 014977           41 DVDEIELISVSWNQ-DYGCFAAGT-SCGFRIYNCEP---FKET-FRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPT  114 (415)
Q Consensus        41 ~~h~~~V~~l~~sp-~g~~la~g~-d~~v~iw~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~  114 (415)
                      .+|.+.|++++|+| ++++|++|+ |+.|+|||+.+   .... ....+ .|...+.++.|++++..+++++.|     +
T Consensus        60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~d-----g  133 (437)
T 3gre_A           60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKD-----G  133 (437)
T ss_dssp             TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETT-----S
T ss_pred             cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCC-----C
Confidence            78999999999999 999999999 99999999975   2211 11222 577889999999999999999988     9


Q ss_pred             eEEEEECC---CCCEEEEEE-------------ccCceeEEE--EcCCeEEEE---eCCeEEEEEcCCceeeeEEec--c
Q 014977          115 KVIIWDDH---QSRCIGEFA-------------FRSDVRSVK--LSRDRIVVV---LEHKIYVYSFVDLKLLHQIET--L  171 (415)
Q Consensus       115 ~i~vwd~~---~~~~~~~~~-------------~~~~i~~l~--~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~--~  171 (415)
                      .|++||+.   +++.+....             +...+.++.  +++++.+++   .|+.|++||+++++.+..+..  |
T Consensus       134 ~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h  213 (437)
T 3gre_A          134 QIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPR  213 (437)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGG
T ss_pred             EEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCC
Confidence            99999984   666555443             234455555  456777777   689999999999999999987  5


Q ss_pred             CCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC-cceEEEe-cCccceEEEEeC----CCCCEEEEEeCCCcEEEEEE
Q 014977          172 ANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLIN-AHDSHIACFTLT----LDGLLLATASTRGTLIRIFN  245 (415)
Q Consensus       172 ~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~-~~~~~~~-~~~~~i~~l~~s----p~g~~l~s~s~dg~~I~vwd  245 (415)
                      ..  .+.++.+++++.+|++ |+.||.|++|+.+. +.+..+. .|...|.+++|+    |++.+|++++.|+. |++||
T Consensus       214 ~~--~v~~~~~s~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~-i~iwd  289 (437)
T 3gre_A          214 HG--AVSSICIDEECCVLIL-GTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTF-LTIWN  289 (437)
T ss_dssp             GC--CEEEEEECTTSCEEEE-EETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEE-EEEEE
T ss_pred             CC--ceEEEEECCCCCEEEE-EcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCc-EEEEE
Confidence            55  5666667777778876 67899999999765 4455665 788899999555    56889999999999 99999


Q ss_pred             CCCCcEEEEEecCC------------------------CcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCC
Q 014977          246 TVDGTRLQEVRRGV------------------------DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGED  298 (415)
Q Consensus       246 ~~~~~~~~~~~~~~------------------------~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~  298 (415)
                      +++++.+..+..+.                        |...|++++|+ ++++|++++.||.|++||+.+++....
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~  365 (437)
T 3gre_A          290 FVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKA  365 (437)
T ss_dssp             TTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEE
T ss_pred             cCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceE
Confidence            99999988887532                        55678899999 779999999999999999999886543

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.6e-31  Score=254.03  Aligned_cols=287  Identities=9%  Similarity=0.050  Sum_probs=224.8

Q ss_pred             CceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCC
Q 014977           45 IELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ  123 (415)
Q Consensus        45 ~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~  123 (415)
                      ..+....|++++++|++|+ |+.|+||++++....  ..+..|...+.++.|++++..+++++.|     +.|++||+.+
T Consensus        98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~s~d-----~~i~iwd~~~  170 (420)
T 3vl1_A           98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQR--EIDQAHVSEITKLKFFPSGEALISSSQD-----MQLKIWSVKD  170 (420)
T ss_dssp             CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEE--EETTSSSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTT
T ss_pred             CceEEEEEecCCCEEEEEECCCCEEEEeCCCccee--eecccccCccEEEEECCCCCEEEEEeCC-----CeEEEEeCCC
Confidence            4555667899999999999 999999999875443  3455888999999999999999999988     9999999999


Q ss_pred             CCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccC---CCc-------------------ce
Q 014977          124 SRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLA---NLR-------------------GL  177 (415)
Q Consensus       124 ~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~---~~~-------------------~~  177 (415)
                      ++.+..+. |...|.+++|+|++..++   .|+.|++||+++++.+..+..+.   ..+                   .+
T Consensus       171 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v  250 (420)
T 3vl1_A          171 GSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKK  250 (420)
T ss_dssp             CCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCC
T ss_pred             CcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcc
Confidence            99988888 899999999999998777   68999999999999988886532   222                   22


Q ss_pred             EEEecCCCceEEEEeCCccCeEEEEEcCCc-ceEEE-ecCccceEEEEeCCCCC-EEEEEeCCCcEEEEEECCCCcE-EE
Q 014977          178 CCLSHHSSTSVLACPGLQRGQVRIEHFGLN-MIKLI-NAHDSHIACFTLTLDGL-LLATASTRGTLIRIFNTVDGTR-LQ  253 (415)
Q Consensus       178 ~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~-~~~~~-~~~~~~i~~l~~sp~g~-~l~s~s~dg~~I~vwd~~~~~~-~~  253 (415)
                      .++.+++++.++++ |+.||.|++|+.... .+..+ ..|...|.+++|+|++. +|++++.||. |++||+++++. +.
T Consensus       251 ~~~~~s~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~-i~vwd~~~~~~~~~  328 (420)
T 3vl1_A          251 NNLEFGTYGKYVIA-GHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGM-LAQWDLRSPECPVG  328 (420)
T ss_dssp             CTTCSSCTTEEEEE-EETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSE-EEEEETTCTTSCSE
T ss_pred             cceEEcCCCCEEEE-EcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCe-EEEEEcCCCcCchh
Confidence            23445678888876 678999999987653 34444 35788999999999999 9999999999 99999998754 66


Q ss_pred             EEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCC
Q 014977          254 EVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGS  333 (415)
Q Consensus       254 ~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (415)
                      .+..+ +...|.++.| +++++|++++.||.|++|++..++........                               
T Consensus       329 ~~~~~-~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~-------------------------------  375 (420)
T 3vl1_A          329 EFLIN-EGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEF-------------------------------  375 (420)
T ss_dssp             EEEES-TTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECT-------------------------------
T ss_pred             hhhcc-CCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceec-------------------------------
Confidence            67654 5668888865 57889999999999999999886543210000                               


Q ss_pred             cccccccccCcccccccceEEEEeCCCceEEEEecCCC----EEEEEEeCCcEEEEEEec
Q 014977          334 SLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQN----TVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~i~~~~~dg~~~~~~~~~  389 (415)
                           .  .+         ..+....+....++|++++    .+++++.+|.+.+|+++.
T Consensus       376 -----~--~~---------~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          376 -----E--TP---------TFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             -----T--SC---------EEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred             -----c--Cc---------cEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence                 0  00         0111223455667898883    599999999999998753

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=6e-31  Score=242.01  Aligned_cols=237  Identities=12%  Similarity=0.226  Sum_probs=208.3

Q ss_pred             CCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEE
Q 014977           42 VDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD  120 (415)
Q Consensus        42 ~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd  120 (415)
                      +|...|.+++|+|++++|++++ ++.|++|++++.+......+..+...+.++.|++++..+++++.+     +.|++||
T Consensus        95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~v~~~d  169 (337)
T 1gxr_A           95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD-----GNIAVWD  169 (337)
T ss_dssp             CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETT-----SCEEEEE
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCC-----CcEEEEe
Confidence            7899999999999999999999 999999999886644444555778889999999999888888887     9999999


Q ss_pred             CCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCcc
Q 014977          121 DHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR  196 (415)
Q Consensus       121 ~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  196 (415)
                      +.+++.+..+. |...|.+++|+|++..++   .|+.|++||+++++.+..+.. ..  .+.++.+++++.++++ ++.+
T Consensus       170 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-~~--~v~~~~~s~~~~~l~~-~~~~  245 (337)
T 1gxr_A          170 LHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF-TS--QIFSLGYCPTGEWLAV-GMES  245 (337)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-SS--CEEEEEECTTSSEEEE-EETT
T ss_pred             CCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecC-CC--ceEEEEECCCCCEEEE-EcCC
Confidence            99999998887 899999999999998777   689999999999988877753 33  4566777777888876 6689


Q ss_pred             CeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEE
Q 014977          197 GQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWL  276 (415)
Q Consensus       197 g~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l  276 (415)
                      +.|++|+........+..|...|.+++|+|++++|++++.||. |++||+.+++.+....   +...|.+++|+|++++|
T Consensus       246 ~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l  321 (337)
T 1gxr_A          246 SNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNL-LNAWRTPYGASIFQSK---ESSSVLSCDISVDDKYI  321 (337)
T ss_dssp             SCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEEEE---CSSCEEEEEECTTSCEE
T ss_pred             CcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCc-EEEEECCCCeEEEEec---CCCcEEEEEECCCCCEE
Confidence            9999999988888888999999999999999999999999999 9999999999886554   67789999999999999


Q ss_pred             EEEeCCCeEEEEEce
Q 014977          277 AVASDKGTVHIFSLR  291 (415)
Q Consensus       277 ~s~s~dg~i~vwd~~  291 (415)
                      ++++.||.|++|++.
T Consensus       322 ~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          322 VTGSGDKKATVYEVI  336 (337)
T ss_dssp             EEEETTSCEEEEEEE
T ss_pred             EEecCCCeEEEEEEe
Confidence            999999999999974

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=2.8e-31  Score=273.49  Aligned_cols=283  Identities=13%  Similarity=0.168  Sum_probs=236.2

Q ss_pred             ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (415)
Q Consensus        38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i  116 (415)
                      ....+|.+.|.+++|+|++++|++++ +|.|+|||+.++.....  +..+...+.++.|++++..+++++.|     +.|
T Consensus         7 ~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i   79 (814)
T 3mkq_A            7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRS--IQVTETPVRAGKFIARKNWIIVGSDD-----FRI   79 (814)
T ss_dssp             EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEE--EECCSSCEEEEEEEGGGTEEEEEETT-----SEE
T ss_pred             eeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEE--EecCCCcEEEEEEeCCCCEEEEEeCC-----CeE
Confidence            34578999999999999999999999 99999999988665544  34788889999999999999999887     999


Q ss_pred             EEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCc-eeeeEEeccCCCcceEEEecCC-CceEEE
Q 014977          117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDL-KLLHQIETLANLRGLCCLSHHS-STSVLA  190 (415)
Q Consensus       117 ~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~l~  190 (415)
                      ++||+.+++.+..+. |...|.+++|+|++..++   .|+.|++||+.++ .....+..|...  +.++.++| ++..++
T Consensus        80 ~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~--v~~~~~~p~~~~~l~  157 (814)
T 3mkq_A           80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHF--VMCVAFNPKDPSTFA  157 (814)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSC--EEEEEEETTEEEEEE
T ss_pred             EEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCc--EEEEEEEcCCCCEEE
Confidence            999999999999988 899999999999998777   6899999999876 666777777764  45555555 555666


Q ss_pred             EeCCccCeEEEEEcCC-cceEEEecCc-cceEEEEeCC--CCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEE
Q 014977          191 CPGLQRGQVRIEHFGL-NMIKLINAHD-SHIACFTLTL--DGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYS  266 (415)
Q Consensus       191 ~~g~~dg~v~i~~~~~-~~~~~~~~~~-~~i~~l~~sp--~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~  266 (415)
                      + ++.||.|++|+... .....+..+. ..+..++|+|  ++.+|++++.||. |++||+.+++.+..+..  |...|.+
T Consensus       158 ~-~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~-i~~~d~~~~~~~~~~~~--~~~~v~~  233 (814)
T 3mkq_A          158 S-GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT-IKIWDYQTKSCVATLEG--HMSNVSF  233 (814)
T ss_dssp             E-EETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSE-EEEEETTTTEEEEEEEC--CSSCEEE
T ss_pred             E-EeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCE-EEEEECCCCcEEEEEcC--CCCCEEE
Confidence            5 67899999998754 4455555554 8999999999  9999999999999 99999999999999987  7789999


Q ss_pred             EEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCccc
Q 014977          267 IALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYF  346 (415)
Q Consensus       267 l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (415)
                      ++|+|++++|++++.||.|++||+.+++...                                                 
T Consensus       234 ~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~-------------------------------------------------  264 (814)
T 3mkq_A          234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEK-------------------------------------------------  264 (814)
T ss_dssp             EEECSSSSEEEEEETTSCEEEEETTTCSEEE-------------------------------------------------
T ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCcEEE-------------------------------------------------
Confidence            9999999999999999999999998766321                                                 


Q ss_pred             ccccceEEEEeCCCceEEEEecCCCE--EEEEEeCCcEEEEEEec
Q 014977          347 SSEWSFAQFHIPEVTHFIAAFGSQNT--VVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~dg~~~~~~~~~  389 (415)
                             .+..+......++|++++.  +++++.++.+.+|.+..
T Consensus       265 -------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (814)
T 3mkq_A          265 -------TLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN  302 (814)
T ss_dssp             -------EECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSC
T ss_pred             -------EeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCC
Confidence                   2333335666788888843  67788888888887754

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.1e-31  Score=246.87  Aligned_cols=242  Identities=13%  Similarity=0.132  Sum_probs=194.1

Q ss_pred             cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~  117 (415)
                      ...+|...|.+++|+|++.+|++|+ |+.|+|||+.+.+....  +..|...+.++.|+|++..+++++.|     +.|+
T Consensus        71 ~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~--~~~h~~~v~~v~~sp~~~~l~s~~~d-----~~i~  143 (343)
T 2xzm_R           71 ALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKR--FVGHQSEVYSVAFSPDNRQILSAGAE-----REIK  143 (343)
T ss_dssp             EECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEE--EECCCSCEEEEEECSSTTEEEEEETT-----SCEE
T ss_pred             hhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEE--EcCCCCcEEEEEECCCCCEEEEEcCC-----CEEE
Confidence            3578999999999999999999999 99999999998665443  44788899999999999999999988     9999


Q ss_pred             EEECCCCCEEEEE----EccCceeEEEEcCCe----------EEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEE
Q 014977          118 IWDDHQSRCIGEF----AFRSDVRSVKLSRDR----------IVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCL  180 (415)
Q Consensus       118 vwd~~~~~~~~~~----~~~~~i~~l~~~~~~----------~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  180 (415)
                      +||+.. ......    .|...|.+++|+|++          .+++   .|+.|++|| ...+....+..|..  .+.++
T Consensus       144 ~wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~--~v~~~  219 (343)
T 2xzm_R          144 LWNILG-ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHES--NVNHL  219 (343)
T ss_dssp             EEESSS-CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSS--CEEEE
T ss_pred             EEeccC-CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccc--cceEE
Confidence            999874 333333    267889999999986          4455   699999999 45677777888876  45666


Q ss_pred             ecCCCceEEEEeCCccCeEEEEEc-CCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEE--EEec
Q 014977          181 SHHSSTSVLACPGLQRGQVRIEHF-GLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQ--EVRR  257 (415)
Q Consensus       181 ~~~~~~~~l~~~g~~dg~v~i~~~-~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~--~~~~  257 (415)
                      +++|++.+|++ |+.|+.|++|+. ..........+...|.+++|+|++.+|+++ .|+. |++||+.+++...  .+..
T Consensus       220 ~~s~~g~~l~s-gs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~d~~-v~iw~~~~~~~~~~~~~~~  296 (343)
T 2xzm_R          220 SISPNGKYIAT-GGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVG-TDQG-VKIFNLMTQSKAPVCTIEA  296 (343)
T ss_dssp             EECTTSSEEEE-EETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEE-ESSC-EEEEESSSCCSCSEEECCC
T ss_pred             EECCCCCEEEE-EcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEE-CCCC-EEEEEeCCCCCCceEEeec
Confidence            67777888876 678999999997 333333333456779999999999988755 5778 9999998776433  4431


Q ss_pred             C---------CCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977          258 G---------VDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (415)
Q Consensus       258 ~---------~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  294 (415)
                      .         .|...|.+++|+|+|++|++|+.||+|++|++++++
T Consensus       297 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~  342 (343)
T 2xzm_R          297 EPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA  342 (343)
T ss_dssp             CSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred             CcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence            0         266789999999999999999999999999999875

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-32  Score=265.00  Aligned_cols=242  Identities=9%  Similarity=-0.008  Sum_probs=188.7

Q ss_pred             CCCceEEEEEeCCC---------CEEEE-------------------Ee-CCcEEEEEccCCceeE--EEeccCCCeeEE
Q 014977           43 DEIELISVSWNQDY---------GCFAA-------------------GT-SCGFRIYNCEPFKETF--RRDLKSGGFRIV   91 (415)
Q Consensus        43 h~~~V~~l~~sp~g---------~~la~-------------------g~-d~~v~iw~~~~~~~~~--~~~~~~~~~~~~   91 (415)
                      +.+.|.+++|+|++         ++||+                   ++ |+.|+||++++.+...  ...+..+...+.
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~  211 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW  211 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence            46788888888876         56666                   44 6789999998755322  122335566788


Q ss_pred             EEeeeCC------eEEEEecCCCCCCCCCeEEEEECCCCCE-----------EEEEE-ccCceeEEEEcCCeEEEE--eC
Q 014977           92 EMLFRCN------ILALVGAGDNSQYPPTKVIIWDDHQSRC-----------IGEFA-FRSDVRSVKLSRDRIVVV--LE  151 (415)
Q Consensus        92 ~~~~~~~------~~~l~s~~~d~~~~~~~i~vwd~~~~~~-----------~~~~~-~~~~i~~l~~~~~~~~~~--~d  151 (415)
                      .+.|+|+      +.+|++++.|     ++|++||+.+++.           ...+. |...|.+++|++++.++.  .|
T Consensus       212 ~v~wsp~~~~~~~~~~LAs~s~D-----gtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~D  286 (524)
T 2j04_B          212 DLKWHEGCHAPHLVGCLSFVSQE-----GTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKN  286 (524)
T ss_dssp             EEEECSSCCCSSSSCEEEEEETT-----SCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETT
T ss_pred             EEEECCCCCCCCCCceEEEEecC-----CeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCC
Confidence            9999986      5689999888     9999999977642           22444 788999999998875554  79


Q ss_pred             CeEEEEEcCCce-eeeEEeccCCCcceEEEecCCCc-eEEEEeCCccCeEEEEEcCC-cceEEEecCcc--ceEEEEeCC
Q 014977          152 HKIYVYSFVDLK-LLHQIETLANLRGLCCLSHHSST-SVLACPGLQRGQVRIEHFGL-NMIKLINAHDS--HIACFTLTL  226 (415)
Q Consensus       152 ~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~g~~dg~v~i~~~~~-~~~~~~~~~~~--~i~~l~~sp  226 (415)
                      |+|++||+++++ ....+..|...+..+++.+.+++ .+|++ |+.|++|+||+.+. +....+.+|..  .|.+++|+|
T Consensus       287 gtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS-~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp  365 (524)
T 2j04_B          287 GFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVST-VAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCP  365 (524)
T ss_dssp             SEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEE-EETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEET
T ss_pred             CEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEE-eccCCeEEEEECCCCCcccccccccccCcccceEeCC
Confidence            999999998764 44567888876655544666666 56665 77999999999765 45556666653  588999999


Q ss_pred             CCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceec
Q 014977          227 DGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR  293 (415)
Q Consensus       227 ~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~  293 (415)
                      +++.|++++.|+. |++||++++..+..+.+  |.+.|++++|+|+|++|++|+.||+|++||+..+
T Consensus       366 ~~~~l~s~~~d~t-v~lwd~~~~~~~~~l~g--H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~  429 (524)
T 2j04_B          366 QIYSYIYSDGASS-LRAVPSRAAFAVHPLVS--RETTITAIGVSRLHPMVLAGSADGSLIITNAARR  429 (524)
T ss_dssp             TTTEEEEECSSSE-EEEEETTCTTCCEEEEE--CSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS
T ss_pred             CcCeEEEeCCCCc-EEEEECcccccceeeec--CCCceEEEEeCCCCCeEEEEECCCEEEEEechHh
Confidence            9999999999999 99999999998888887  8889999999999999999999999999998653

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=2.8e-31  Score=250.84  Aligned_cols=249  Identities=12%  Similarity=0.159  Sum_probs=201.8

Q ss_pred             ccCCCCCCceEEEEEeC-CCCEEEEEe-CCcEEEEEccCCceeEEEec-----------cCCCeeEEEEeeeC-CeEEEE
Q 014977           38 AFSDVDEIELISVSWNQ-DYGCFAAGT-SCGFRIYNCEPFKETFRRDL-----------KSGGFRIVEMLFRC-NILALV  103 (415)
Q Consensus        38 ~~~~~h~~~V~~l~~sp-~g~~la~g~-d~~v~iw~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~-~~~~l~  103 (415)
                      ....+|.+.|++++|+| ++++|++|+ ||.|+||++++.........           ..+...+.++.|++ ++..++
T Consensus        37 ~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  116 (408)
T 4a11_B           37 DVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFT  116 (408)
T ss_dssp             EECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEE
T ss_pred             eeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEE
Confidence            34567999999999999 999999999 99999999987544322211           24788899999999 677888


Q ss_pred             ecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCe---EEEE---eCCeEEEEEcCCceeeeEEeccCCCcce
Q 014977          104 GAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDR---IVVV---LEHKIYVYSFVDLKLLHQIETLANLRGL  177 (415)
Q Consensus       104 s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~---~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~  177 (415)
                      +++.|     +.|++||+.+++.+..+.+...+.++.+.+.+   .+++   .++.|++||+.+++.+..+..|...  +
T Consensus       117 s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~--v  189 (408)
T 4a11_B          117 SSSFD-----KTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQE--I  189 (408)
T ss_dssp             EEETT-----SEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSC--E
T ss_pred             EEeCC-----CeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCc--E
Confidence            88877     99999999999999999999999999999854   3555   6899999999999999888888774  4


Q ss_pred             EEEecCCCceEEEEeCCccCeEEEEEcCCc--ceEEE---------------ecCccceEEEEeCCCCCEEEEEeCCCcE
Q 014977          178 CCLSHHSSTSVLACPGLQRGQVRIEHFGLN--MIKLI---------------NAHDSHIACFTLTLDGLLLATASTRGTL  240 (415)
Q Consensus       178 ~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~--~~~~~---------------~~~~~~i~~l~~sp~g~~l~s~s~dg~~  240 (415)
                      .++.++|++..++++|+.||.|++|+.+..  .+..+               ..|...|.+++|+|++++|++++.|+. 
T Consensus       190 ~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-  268 (408)
T 4a11_B          190 LAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNR-  268 (408)
T ss_dssp             EEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSC-
T ss_pred             EEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCe-
Confidence            555556666643334778999999997643  23333               578899999999999999999999999 


Q ss_pred             EEEEECCCC-----------------------------------------------cEEEEEecCCCcccEEEEEeCCCC
Q 014977          241 IRIFNTVDG-----------------------------------------------TRLQEVRRGVDRAEIYSIALSPNV  273 (415)
Q Consensus       241 I~vwd~~~~-----------------------------------------------~~~~~~~~~~~~~~v~~l~~spdg  273 (415)
                      |++||+.++                                               +.+..+.+  |...|.+++|+|++
T Consensus       269 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~v~~~~~s~~~  346 (408)
T 4a11_B          269 MRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKG--HYKTVDCCVFQSNF  346 (408)
T ss_dssp             EEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECC--CSSCEEEEEEETTT
T ss_pred             EEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeecc--CCCeEEEEEEcCCC
Confidence            999998754                                               34455555  77899999999999


Q ss_pred             CEEEEEeCCCeEEEEEceecccC
Q 014977          274 QWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       274 ~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                      ++|++++.||.|++||+++++..
T Consensus       347 ~~l~s~~~dg~i~iw~~~~~~~~  369 (408)
T 4a11_B          347 QELYSGSRDCNILAWVPSLYEPV  369 (408)
T ss_dssp             TEEEEEETTSCEEEEEECC----
T ss_pred             CEEEEECCCCeEEEEeCCCCCcc
Confidence            99999999999999999998754

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.7e-31  Score=255.87  Aligned_cols=244  Identities=11%  Similarity=0.159  Sum_probs=191.6

Q ss_pred             CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCce---------eEEEeccCCC------------eeEEEEeeeC
Q 014977           40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE---------TFRRDLKSGG------------FRIVEMLFRC   97 (415)
Q Consensus        40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~---------~~~~~~~~~~------------~~~~~~~~~~   97 (415)
                      ...|.+.|++++|+|+|++||+|+ ||.|+||++.+.+.         .....+..|.            ..|.++.|++
T Consensus        24 ~~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~  103 (447)
T 3dw8_B           24 DVAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP  103 (447)
T ss_dssp             CCCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC
T ss_pred             cccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC
Confidence            345788999999999999999999 99999999986542         1223344666            7789999999


Q ss_pred             Ce--EEEEecCCCCCCCCCeEEEEECCCCCEE---------------------------------------EEE--EccC
Q 014977           98 NI--LALVGAGDNSQYPPTKVIIWDDHQSRCI---------------------------------------GEF--AFRS  134 (415)
Q Consensus        98 ~~--~~l~s~~~d~~~~~~~i~vwd~~~~~~~---------------------------------------~~~--~~~~  134 (415)
                      ++  ..+++++.|     +.|++||+.+++..                                       ..+  .|..
T Consensus       104 ~~~~~~l~s~s~d-----~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  178 (447)
T 3dw8_B          104 QKNAAQFLLSTND-----KTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTY  178 (447)
T ss_dssp             CCSSSEEEEEECS-----SCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSS
T ss_pred             CCCcceEEEeCCC-----CeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCc
Confidence            87  677777777     99999998764432                                       122  2888


Q ss_pred             ceeEEEEcCCeEEEE--eCCeEEEEEcCC-ceeeeE-------EeccCCCcceEEEecCCCc-eEEEEeCCccCeEEEEE
Q 014977          135 DVRSVKLSRDRIVVV--LEHKIYVYSFVD-LKLLHQ-------IETLANLRGLCCLSHHSST-SVLACPGLQRGQVRIEH  203 (415)
Q Consensus       135 ~i~~l~~~~~~~~~~--~d~~i~iwd~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~~-~~l~~~g~~dg~v~i~~  203 (415)
                      .|.+++|+|++.+++  .|+.|++||+.+ ++.+..       +..|..  .+.++.++|++ .++++ |+.||.|++|+
T Consensus       179 ~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~p~~~~~l~s-~~~dg~i~iwd  255 (447)
T 3dw8_B          179 HINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTE--VITAAEFHPNSCNTFVY-SSSKGTIRLCD  255 (447)
T ss_dssp             CCCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCC--CEEEEEECSSCTTEEEE-EETTSCEEEEE
T ss_pred             ceEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCc--ceEEEEECCCCCcEEEE-EeCCCeEEEEE
Confidence            999999999998888  799999999984 444442       334555  45666666666 66665 67899999999


Q ss_pred             cCCcc-----eEEEecCcc------------ceEEEEeCCCCCEEEEEeCCCcEEEEEECCC-CcEEEEEecCCCccc--
Q 014977          204 FGLNM-----IKLINAHDS------------HIACFTLTLDGLLLATASTRGTLIRIFNTVD-GTRLQEVRRGVDRAE--  263 (415)
Q Consensus       204 ~~~~~-----~~~~~~~~~------------~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~-~~~~~~~~~~~~~~~--  263 (415)
                      .....     +..+..|..            .|.+++|+|+|++|++++. +. |++||+++ ++.+..+..  |...  
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~-v~iwd~~~~~~~~~~~~~--~~~~~~  331 (447)
T 3dw8_B          256 MRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LS-VKVWDLNMENRPVETYQV--HEYLRS  331 (447)
T ss_dssp             TTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SE-EEEEETTCCSSCSCCEES--CGGGTT
T ss_pred             CcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-Ce-EEEEeCCCCccccceeec--cccccc
Confidence            77644     577888876            8999999999999999998 98 99999997 888888877  4321  


Q ss_pred             -------------EEEEEeCCCCCEEEEEeCCCeEEEEEceeccc
Q 014977          264 -------------IYSIALSPNVQWLAVASDKGTVHIFSLRVRVV  295 (415)
Q Consensus       264 -------------v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~  295 (415)
                                   +..++|+|++++|++++.||.|++||+.+++.
T Consensus       332 ~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~  376 (447)
T 3dw8_B          332 KLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD  376 (447)
T ss_dssp             THHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCE
T ss_pred             cccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcc
Confidence                         33499999999999999999999999998765

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=3.5e-30  Score=248.35  Aligned_cols=274  Identities=14%  Similarity=0.215  Sum_probs=220.8

Q ss_pred             cCCCCCCce-EEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977           39 FSDVDEIEL-ISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (415)
Q Consensus        39 ~~~~h~~~V-~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i  116 (415)
                      ...+|...| .++.+  ++.+|++|+ |+.|++||+.+.+....  +.+|...+.++.|++++ .+++++.|     +.|
T Consensus       116 ~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~--~~~h~~~V~~l~~~~~~-~l~s~s~d-----g~i  185 (464)
T 3v7d_B          116 TLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQ--LSGHDGGVWALKYAHGG-ILVSGSTD-----RTV  185 (464)
T ss_dssp             EEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEE--ECCCSSCEEEEEECSTT-EEEEEETT-----SCE
T ss_pred             EEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEE--EeCCCcCEEEEEEcCCC-EEEEEeCC-----CCE
Confidence            456888875 66555  567999999 99999999988665443  45889999999999988 77777777     999


Q ss_pred             EEEECCCCCEEEEEE-ccCceeEEEEc--CCeEEEE---eCCeEEEEEcCCcee-----------------------eeE
Q 014977          117 IIWDDHQSRCIGEFA-FRSDVRSVKLS--RDRIVVV---LEHKIYVYSFVDLKL-----------------------LHQ  167 (415)
Q Consensus       117 ~vwd~~~~~~~~~~~-~~~~i~~l~~~--~~~~~~~---~d~~i~iwd~~~~~~-----------------------~~~  167 (415)
                      ++||+.+++.+..+. |...|.+++|+  +++.+++   .|+.|++||+.+++.                       +..
T Consensus       186 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (464)
T 3v7d_B          186 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV  265 (464)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEE
T ss_pred             EEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEE
Confidence            999999999999988 89999999998  5666666   699999999987653                       233


Q ss_pred             EeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcC-CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEEC
Q 014977          168 IETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNT  246 (415)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~  246 (415)
                      +.+|..  .+.++.++  +.++++ |+.|+.|++|+.. .+.+..+.+|...|.+++|+|++++|++++.|+. |++||+
T Consensus       266 ~~~~~~--~v~~~~~~--~~~l~~-~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~-i~vwd~  339 (464)
T 3v7d_B          266 LRGHMA--SVRTVSGH--GNIVVS-GSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT-IRIWDL  339 (464)
T ss_dssp             ECCCSS--CEEEEEEE--TTEEEE-EETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSC-EEEEET
T ss_pred             ccCccc--eEEEEcCC--CCEEEE-EeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCc-EEEEEC
Confidence            444444  45556554  446665 6789999999875 4667788899999999999999999999999999 999999


Q ss_pred             CCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCC
Q 014977          247 VDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPS  326 (415)
Q Consensus       247 ~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (415)
                      ++++.+..+..  |...|.+++|+  +.+|++++.||.|++||+.+++...                             
T Consensus       340 ~~~~~~~~~~~--h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~-----------------------------  386 (464)
T 3v7d_B          340 ENGELMYTLQG--HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKF-----------------------------  386 (464)
T ss_dssp             TTTEEEEEECC--CSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEE-----------------------------
T ss_pred             CCCcEEEEEeC--CCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceee-----------------------------
Confidence            99999999988  88899999997  5899999999999999998765321                             


Q ss_pred             CCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCCCEEEEEEeCCcEEEEEEec
Q 014977          327 TGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dg~~~~~~~~~  389 (415)
                                                 .+. .......++|++++.++++++||.|++|++..
T Consensus       387 ---------------------------~~~-~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~  421 (464)
T 3v7d_B          387 ---------------------------SYH-HTNLSAITTFYVSDNILVSGSENQFNIYNLRS  421 (464)
T ss_dssp             ---------------------------EEE-CTTCCCEEEEEECSSEEEEEETTEEEEEETTT
T ss_pred             ---------------------------eec-CCCCccEEEEEeCCCEEEEecCCeEEEEECCC
Confidence                                       111 12344567888887777777799999999865

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.9e-30  Score=236.99  Aligned_cols=239  Identities=12%  Similarity=0.113  Sum_probs=196.4

Q ss_pred             eEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCE
Q 014977           47 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRC  126 (415)
Q Consensus        47 V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~  126 (415)
                      +++|+||+++ +||+|.|++|+|||+++++......++.|...|.++.|++++.++++++.|     +.|++||+++++.
T Consensus        28 ~~~l~WS~~~-~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~D-----g~v~iw~~~~~~~  101 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS-----AEVQLWDVQQQKR  101 (318)
T ss_dssp             CBCEEECTTS-EEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTEE
T ss_pred             ceEEEECCCC-EEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECC-----CcEEEeecCCcee
Confidence            5779999986 888888999999999998776666667888899999999999999999988     9999999998877


Q ss_pred             EEEEE-c-----------------------------------------cCceeEEEEcCCeEEEE---eCCeEEEEEcCC
Q 014977          127 IGEFA-F-----------------------------------------RSDVRSVKLSRDRIVVV---LEHKIYVYSFVD  161 (415)
Q Consensus       127 ~~~~~-~-----------------------------------------~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~  161 (415)
                      +..+. |                                         ...+..+.+.+++.+++   .|+.|++||+.+
T Consensus       102 ~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  181 (318)
T 4ggc_A          102 LRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP  181 (318)
T ss_dssp             EEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred             EEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCC
Confidence            66543 2                                         34456667777777666   689999999987


Q ss_pred             ceee----eEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEe--
Q 014977          162 LKLL----HQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATAS--  235 (415)
Q Consensus       162 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s--  235 (415)
                      ++..    .....+...+....+.+.....+...+++.++.|++|+...........+...+..+.|+|++..+++++  
T Consensus       182 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~  261 (318)
T 4ggc_A          182 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGF  261 (318)
T ss_dssp             BTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECT
T ss_pred             CcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEc
Confidence            6533    2333444444555555555444445568899999999998888777788899999999999999887654  


Q ss_pred             CCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977          236 TRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (415)
Q Consensus       236 ~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  294 (415)
                      .|+. |+|||+++++++.++.+  |.+.|++++|+|||++|++++.||+|+|||+.+.+
T Consensus       262 ~d~~-i~iwd~~~~~~~~~l~g--H~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          262 AQNQ-LVIWKYPTMAKVAELKG--HTSRVLSLTMSPDGATVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             TTCC-EEEEETTTCCEEEEECC--CSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred             CCCE-EEEEECCCCcEEEEEcC--CCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence            7899 99999999999999998  88899999999999999999999999999997653

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.1e-30  Score=243.31  Aligned_cols=280  Identities=14%  Similarity=0.101  Sum_probs=220.8

Q ss_pred             CCCCCc--eEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977           41 DVDEIE--LISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (415)
Q Consensus        41 ~~h~~~--V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~  117 (415)
                      .+|...  +.+++|++  ..+++++ |+.|++|++++......... .+...+.++.|++++..+++++.|     +.|+
T Consensus        88 ~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~  159 (401)
T 4aez_A           88 PGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAET-DESTYVASVKWSHDGSFLSVGLGN-----GLVD  159 (401)
T ss_dssp             TTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEEC-CTTCCEEEEEECTTSSEEEEEETT-----SCEE
T ss_pred             CCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeec-CCCCCEEEEEECCCCCEEEEECCC-----CeEE
Confidence            355554  45566665  3455555 99999999998766554443 478889999999999999998887     9999


Q ss_pred             EEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE-eCCeEEEEEcC-CceeeeEEeccCCCcceEEEecCCCceEEEEeCC
Q 014977          118 IWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-LEHKIYVYSFV-DLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL  194 (415)
Q Consensus       118 vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  194 (415)
                      +||+.+++.+..+. |...|.+++|+++..... .|+.|++||++ ....+..+..|..  .+.++.+++++.++++ |+
T Consensus       160 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~s-~~  236 (401)
T 4aez_A          160 IYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSS--EVCGLAWRSDGLQLAS-GG  236 (401)
T ss_dssp             EEETTTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSS--CEEEEEECTTSSEEEE-EE
T ss_pred             EEECcCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCCCC--CeeEEEEcCCCCEEEE-Ee
Confidence            99999999999887 899999999976543333 79999999998 4566777777777  4556666667778876 66


Q ss_pred             ccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCC-EEEEEe--CCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeC
Q 014977          195 QRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGL-LLATAS--TRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALS  270 (415)
Q Consensus       195 ~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~-~l~s~s--~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~s  270 (415)
                      .|+.|++|+... ..+..+..|...|.+++|+|++. ++++++  .|+. |++||+.+++.+..+.   +...|.+++|+
T Consensus       237 ~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~-i~i~d~~~~~~~~~~~---~~~~v~~~~~s  312 (401)
T 4aez_A          237 NDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQ-IHFWNAATGARVNTVD---AGSQVTSLIWS  312 (401)
T ss_dssp             TTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCE-EEEEETTTCCEEEEEE---CSSCEEEEEEC
T ss_pred             CCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCE-EEEEECCCCCEEEEEe---CCCcEEEEEEC
Confidence            899999998775 56667888999999999999774 666665  7999 9999999999998887   45689999999


Q ss_pred             CCCCEEEEEe--CCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCccccc
Q 014977          271 PNVQWLAVAS--DKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSS  348 (415)
Q Consensus       271 pdg~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (415)
                      |++++|++++  .||.|++||+.+++...                                                   
T Consensus       313 ~~~~~l~~~~g~~dg~i~v~~~~~~~~~~---------------------------------------------------  341 (401)
T 4aez_A          313 PHSKEIMSTHGFPDNNLSIWSYSSSGLTK---------------------------------------------------  341 (401)
T ss_dssp             SSSSEEEEEECTTTCEEEEEEEETTEEEE---------------------------------------------------
T ss_pred             CCCCeEEEEeecCCCcEEEEecCCcccee---------------------------------------------------
Confidence            9999999954  89999999998865321                                                   


Q ss_pred             ccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977          349 EWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~  389 (415)
                         ...+.-....+..++|+++ ..|++++.||.|++|++..
T Consensus       342 ---~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~  380 (401)
T 4aez_A          342 ---QVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYD  380 (401)
T ss_dssp             ---EEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred             ---EEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence               0112223345667899998 6677788899999999975

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=3.6e-31  Score=244.46  Aligned_cols=244  Identities=12%  Similarity=0.024  Sum_probs=198.7

Q ss_pred             CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCce-eEEEeccCCCeeEEEEeeeCCeE-EEEecCCCCCCCCCeE
Q 014977           40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE-TFRRDLKSGGFRIVEMLFRCNIL-ALVGAGDNSQYPPTKV  116 (415)
Q Consensus        40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~~~~~~i  116 (415)
                      ..+|.+.|++++|+|++++|++++ |+.|+||++.+... .....+..+...+.++.|++++. .+++++.|     +.|
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i   81 (342)
T 1yfq_A            7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQ-----GEI   81 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETT-----SCE
T ss_pred             ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCC-----CeE
Confidence            458999999999999999999999 99999999987651 11122237788899999999998 88888887     999


Q ss_pred             EEEEC-CCCCEEEEEE--ccCceeEEEEcCCeEEEE---eCCeEEEEEcCC---------ceeeeEEeccCCCcceEEEe
Q 014977          117 IIWDD-HQSRCIGEFA--FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVD---------LKLLHQIETLANLRGLCCLS  181 (415)
Q Consensus       117 ~vwd~-~~~~~~~~~~--~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~---------~~~~~~~~~~~~~~~~~~~~  181 (415)
                      ++||+ .+++......  |...|.+++|+| +..++   .|+.|++||+.+         ++.+..+. +..  .+.++.
T Consensus        82 ~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~--~v~~~~  157 (342)
T 1yfq_A           82 LKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKN--KIFTMD  157 (342)
T ss_dssp             EEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCC--CEEEEE
T ss_pred             EEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCC--ceEEEE
Confidence            99999 8887755555  889999999999 65555   699999999987         66666655 444  566677


Q ss_pred             cCCCceEEEEeCCccCeEEEEEcCC-c---ceEEEecCccceEEEEeCC-CCCEEEEEeCCCcEEEEEECCCC------c
Q 014977          182 HHSSTSVLACPGLQRGQVRIEHFGL-N---MIKLINAHDSHIACFTLTL-DGLLLATASTRGTLIRIFNTVDG------T  250 (415)
Q Consensus       182 ~~~~~~~l~~~g~~dg~v~i~~~~~-~---~~~~~~~~~~~i~~l~~sp-~g~~l~s~s~dg~~I~vwd~~~~------~  250 (415)
                      +++++  +++ ++.++.|++|+... .   .......|...+.+++|+| ++++|++++.||. |++|++...      +
T Consensus       158 ~~~~~--l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~-i~i~~~~~~~~~~~~~  233 (342)
T 1yfq_A          158 TNSSR--LIV-GMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR-VAVEFFDDQGDDYNSS  233 (342)
T ss_dssp             ECSSE--EEE-EESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE-EEEEECCTTCCSTTCT
T ss_pred             ecCCc--EEE-EeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCc-EEEEEEcCCCcccccc
Confidence            77766  444 56899999999876 2   2234456888999999999 9999999999999 999999887      7


Q ss_pred             EEEEEecCC-------CcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977          251 RLQEVRRGV-------DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       251 ~~~~~~~~~-------~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                      ....+..+.       |...|.+++|+|++++|++++.||.|++||+.+++..
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~  286 (342)
T 1yfq_A          234 KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKI  286 (342)
T ss_dssp             TCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEE
T ss_pred             cceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHh
Confidence            777887731       1338999999999999999999999999999887643

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=2.1e-30  Score=241.17  Aligned_cols=287  Identities=10%  Similarity=0.102  Sum_probs=224.3

Q ss_pred             CCccCCCCCCceEEEEEeCC---CCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCC
Q 014977           36 QTAFSDVDEIELISVSWNQD---YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQY  111 (415)
Q Consensus        36 ~~~~~~~h~~~V~~l~~sp~---g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~  111 (415)
                      ......+|.+.|++++|+|+   |++|++|+ |+.|+||++++.+......+..|...+.++.|++++..+++++.|   
T Consensus        31 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---  107 (368)
T 3mmy_A           31 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCD---  107 (368)
T ss_dssp             CEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT---
T ss_pred             eeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCC---
Confidence            34557899999999999999   69999999 999999999874444434455788999999999999999999887   


Q ss_pred             CCCeEEEEECCCCCEEEEEEccCceeEEEE--cCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCc
Q 014977          112 PPTKVIIWDDHQSRCIGEFAFRSDVRSVKL--SRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSST  186 (415)
Q Consensus       112 ~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~--~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (415)
                        +.|++||+.+++.+....|...|.+++|  ++++.+++   .|+.|++||+++++.+..+..+.   .+.++.+.++ 
T Consensus       108 --g~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---~~~~~~~~~~-  181 (368)
T 3mmy_A          108 --KTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE---RCYCADVIYP-  181 (368)
T ss_dssp             --SEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS---CEEEEEEETT-
T ss_pred             --CcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC---CceEEEecCC-
Confidence              9999999999998887789999999999  89988777   68999999999999988887665   4555565554 


Q ss_pred             eEEEEeCCccCeEEEEEcCCcceEEE---ecCccceEEEEeCCCCCE----EEEEeCCCcEEEEEECCCC---cEEEEEe
Q 014977          187 SVLACPGLQRGQVRIEHFGLNMIKLI---NAHDSHIACFTLTLDGLL----LATASTRGTLIRIFNTVDG---TRLQEVR  256 (415)
Q Consensus       187 ~~l~~~g~~dg~v~i~~~~~~~~~~~---~~~~~~i~~l~~sp~g~~----l~s~s~dg~~I~vwd~~~~---~~~~~~~  256 (415)
                       .+++ +..++.+.+|+.........   ..+...+.++.+.+++..    +++++.|+. |++||++..   +.+..+.
T Consensus       182 -~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~-i~i~~~~~~~~~~~~~~~~  258 (368)
T 3mmy_A          182 -MAVV-ATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGR-VAIHYINPPNPAKDNFTFK  258 (368)
T ss_dssp             -EEEE-EEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSE-EEEEESSCSCHHHHSEEEE
T ss_pred             -eeEE-EeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCc-EEEEecCCCCccccceeee
Confidence             3333 45789999998876433222   123345555665554443    999999999 999999887   5566676


Q ss_pred             cCCCcc------------cEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCC
Q 014977          257 RGVDRA------------EIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLIS  324 (415)
Q Consensus       257 ~~~~~~------------~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (415)
                      .  |..            .|.+++|+|++++|++++.||.|++||+++++...                           
T Consensus       259 ~--~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~---------------------------  309 (368)
T 3mmy_A          259 C--HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLK---------------------------  309 (368)
T ss_dssp             C--SEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE---------------------------
T ss_pred             e--eecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEE---------------------------
Confidence            6  444            69999999999999999999999999999876432                           


Q ss_pred             CCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEecCCC
Q 014977          325 PSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDPVHG  392 (415)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~~~~  392 (415)
                                                   .+.........++|+++ ..|++++.||....|.+...+.
T Consensus       310 -----------------------------~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~~~  349 (368)
T 3mmy_A          310 -----------------------------TSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQK  349 (368)
T ss_dssp             -----------------------------ECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCTTS
T ss_pred             -----------------------------EecCCCCCceEEEECCCCCeEEEEecccccccccccCCCc
Confidence                                         11122345677899998 6788888888777766554333

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=4.4e-30  Score=234.53  Aligned_cols=241  Identities=14%  Similarity=0.216  Sum_probs=203.2

Q ss_pred             cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~  117 (415)
                      ...+|...|.+++|+|++++|++|+ |+.|++||+++.+....  +..+...+.++.|++++..+++++.|     +.|+
T Consensus        60 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~s~~~d-----~~i~  132 (312)
T 4ery_A           60 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSFD-----ESVR  132 (312)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE--EECCSSCEEEEEECSSSSEEEEEETT-----SCEE
T ss_pred             hhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEE--EcCCCCCEEEEEEcCCCCEEEEEeCC-----CcEE
Confidence            4568999999999999999999999 99999999998665443  44788889999999999999999988     9999


Q ss_pred             EEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeC
Q 014977          118 IWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG  193 (415)
Q Consensus       118 vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  193 (415)
                      +||+++++.+..+. |...|.+++|+|++.+++   .|+.|++||+.+++.+..+..... ..+..+.+++++.++++ +
T Consensus       133 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~-~  210 (312)
T 4ery_A          133 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN-PPVSFVKFSPNGKYILA-A  210 (312)
T ss_dssp             EEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSC-CCEEEEEECTTSSEEEE-E
T ss_pred             EEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCC-CceEEEEECCCCCEEEE-E
Confidence            99999999998887 889999999999998877   699999999999888777643322 23455666777778876 6


Q ss_pred             CccCeEEEEEcCC-cceEEEecCccceE---EEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEe
Q 014977          194 LQRGQVRIEHFGL-NMIKLINAHDSHIA---CFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIAL  269 (415)
Q Consensus       194 ~~dg~v~i~~~~~-~~~~~~~~~~~~i~---~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~  269 (415)
                      +.|+.|++|+... +.+..+.+|.....   .....+++.+|++++.||. |++||+.+++.+..+.+  |...|.+++|
T Consensus       211 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~-i~vwd~~~~~~~~~~~~--h~~~v~~~~~  287 (312)
T 4ery_A          211 TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL-VYIWNLQTKEIVQKLQG--HTDVVISTAC  287 (312)
T ss_dssp             ETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSC-EEEEETTTCCEEEEECC--CSSCEEEEEE
T ss_pred             cCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCE-EEEEECCCchhhhhhhc--cCCcEEEEee
Confidence            6899999998765 45667777765433   2333468899999999999 99999999999999988  7889999999


Q ss_pred             CCCCCEEEEEe--CCCeEEEEEce
Q 014977          270 SPNVQWLAVAS--DKGTVHIFSLR  291 (415)
Q Consensus       270 spdg~~l~s~s--~dg~i~vwd~~  291 (415)
                      +|++++|++++  .|++|++|+.+
T Consensus       288 ~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          288 HPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             CSSSSEEEEEECTTTCCEEEEECC
T ss_pred             cCcCCceEEEEccCCccEEEecCC
Confidence            99999999987  69999999964

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.7e-31  Score=251.04  Aligned_cols=247  Identities=12%  Similarity=0.183  Sum_probs=200.3

Q ss_pred             cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCc-----eeEEEeccCCCeeEEEEeeeCC-eEEEEecCCCCCC
Q 014977           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFK-----ETFRRDLKSGGFRIVEMLFRCN-ILALVGAGDNSQY  111 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~~  111 (415)
                      ....|...|.+++|+|+|++|++|+ |+.++||++....     ......+.+|...+.++.|.++ ...+++++.|   
T Consensus       103 ~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D---  179 (380)
T 3iz6_a          103 AIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGD---  179 (380)
T ss_dssp             EEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTT---
T ss_pred             EEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCC---
Confidence            3467899999999999999999999 9999999986422     1122234577778888888885 4567888887   


Q ss_pred             CCCeEEEEECCCCCEEEEEE------ccCceeEEEEcC-CeEEEE---eCCeEEEEEcC-CceeeeEEeccCCCcceEEE
Q 014977          112 PPTKVIIWDDHQSRCIGEFA------FRSDVRSVKLSR-DRIVVV---LEHKIYVYSFV-DLKLLHQIETLANLRGLCCL  180 (415)
Q Consensus       112 ~~~~i~vwd~~~~~~~~~~~------~~~~i~~l~~~~-~~~~~~---~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~  180 (415)
                        +.|++||+.+++.+..+.      |...|.++.+++ ++.+++   .|+.|++||++ ..+.+..+.+|...+..+  
T Consensus       180 --~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v--  255 (380)
T 3iz6_a          180 --QTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSV--  255 (380)
T ss_dssp             --SCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEE--
T ss_pred             --CcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEE--
Confidence              999999999999988872      678899999987 666666   69999999997 457778888888755544  


Q ss_pred             ecCCCceEEEEeCCccCeEEEEEcCC-cceEEEecCc-------cceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEE
Q 014977          181 SHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINAHD-------SHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRL  252 (415)
Q Consensus       181 ~~~~~~~~l~~~g~~dg~v~i~~~~~-~~~~~~~~~~-------~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~  252 (415)
                      .++|++.+|++ |+.|++|++|+... ..+..+..+.       ..+.+++|+|+|++|++|+.||. |++||+.+++.+
T Consensus       256 ~~~p~~~~l~s-~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~-i~vwd~~~~~~~  333 (380)
T 3iz6_a          256 KFFPDGQRFGT-GSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGD-CYVWDTLLAEMV  333 (380)
T ss_dssp             EECTTSSEEEE-ECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSC-EEEEETTTCCEE
T ss_pred             EEecCCCeEEE-EcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCC-EEEEECCCCceE
Confidence            45556677776 77999999999775 4444454332       24899999999999999999999 999999999988


Q ss_pred             EEEec--CCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977          253 QEVRR--GVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (415)
Q Consensus       253 ~~~~~--~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  294 (415)
                      ..+..  ..|.+.|.+++|+|+|++|++|+.|++|+||++...+
T Consensus       334 ~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          334 LNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             EEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred             EEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence            77732  2278899999999999999999999999999998765

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.6e-32  Score=257.30  Aligned_cols=280  Identities=14%  Similarity=0.180  Sum_probs=219.5

Q ss_pred             CCCceEEEEEeCCCC-EEEEE----------e-CCcEEEEEccCCcee-EEEeccCCCeeEEEEeeeCCeEEEEecCCCC
Q 014977           43 DEIELISVSWNQDYG-CFAAG----------T-SCGFRIYNCEPFKET-FRRDLKSGGFRIVEMLFRCNILALVGAGDNS  109 (415)
Q Consensus        43 h~~~V~~l~~sp~g~-~la~g----------~-d~~v~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~  109 (415)
                      +...|.+++|+|+++ +|++|          + |+.|+||++.+.... ....+ .+...+.++.|++++.++++++.| 
T Consensus        11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d-   88 (416)
T 2pm9_A           11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDN-   88 (416)
T ss_dssp             EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESS-
T ss_pred             hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccC-
Confidence            345789999999997 99998          7 899999999875432 11122 577889999999999999999887 


Q ss_pred             CCCCCeEEEEECCC----CCEEEEEE-ccCceeEEEEcCC-eEEEE---eCCeEEEEEcCCce------eeeE---Eecc
Q 014977          110 QYPPTKVIIWDDHQ----SRCIGEFA-FRSDVRSVKLSRD-RIVVV---LEHKIYVYSFVDLK------LLHQ---IETL  171 (415)
Q Consensus       110 ~~~~~~i~vwd~~~----~~~~~~~~-~~~~i~~l~~~~~-~~~~~---~d~~i~iwd~~~~~------~~~~---~~~~  171 (415)
                          +.|++||+.+    .+.+..+. |...|.+++|+|+ +.+++   .|+.|++||+.+++      ....   +..|
T Consensus        89 ----g~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  164 (416)
T 2pm9_A           89 ----GSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSS  164 (416)
T ss_dssp             ----SCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCS
T ss_pred             ----CeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCC
Confidence                9999999987    35666666 8999999999998 66666   68999999998876      3322   2445


Q ss_pred             CCCcceEEEecCCC-ceEEEEeCCccCeEEEEEcCC-cceEEEecC------ccceEEEEeCCCC-CEEEEEeCCC---c
Q 014977          172 ANLRGLCCLSHHSS-TSVLACPGLQRGQVRIEHFGL-NMIKLINAH------DSHIACFTLTLDG-LLLATASTRG---T  239 (415)
Q Consensus       172 ~~~~~~~~~~~~~~-~~~l~~~g~~dg~v~i~~~~~-~~~~~~~~~------~~~i~~l~~sp~g-~~l~s~s~dg---~  239 (415)
                      ...+.  ++.++++ +.++++ ++.|+.|++|+... +.+..+..+      ...|.+++|+|++ .+|++++.|+   .
T Consensus       165 ~~~v~--~~~~~~~~~~~l~~-~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~  241 (416)
T 2pm9_A          165 VDEVI--SLAWNQSLAHVFAS-AGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPS  241 (416)
T ss_dssp             SCCCC--EEEECSSCTTEEEE-ESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCC
T ss_pred             CCCee--EEEeCCCCCcEEEE-EcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCce
Confidence            55444  4555555 445655 67899999999765 455666665      7889999999997 6899999998   9


Q ss_pred             EEEEEECCCC-cEEEEEe-cCCCcccEEEEEeCC-CCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCC
Q 014977          240 LIRIFNTVDG-TRLQEVR-RGVDRAEIYSIALSP-NVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHS  316 (415)
Q Consensus       240 ~I~vwd~~~~-~~~~~~~-~~~~~~~v~~l~~sp-dg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (415)
                       |++||++++ +.+..+. .  |...|.+++|+| ++++|++++.||.|++||+++++...                   
T Consensus       242 -i~~~d~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~-------------------  299 (416)
T 2pm9_A          242 -ILIWDLRNANTPLQTLNQG--HQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLS-------------------  299 (416)
T ss_dssp             -CCEEETTSTTSCSBCCCSC--CSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEE-------------------
T ss_pred             -EEEEeCCCCCCCcEEeecC--ccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccce-------------------
Confidence             999999986 5566666 5  778999999999 99999999999999999998876431                   


Q ss_pred             CCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC--CEEEEEEeCCcEEEEEEecC
Q 014977          317 SSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ--NTVVIVSMDGSFYRCSFDPV  390 (415)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~dg~~~~~~~~~~  390 (415)
                                                           .+......+..++|+++  ..+++++.||.|++|++...
T Consensus       300 -------------------------------------~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~  338 (416)
T 2pm9_A          300 -------------------------------------QFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNL  338 (416)
T ss_dssp             -------------------------------------EEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred             -------------------------------------eecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence                                                 23333345566899997  46777777999999999763

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=7.5e-30  Score=274.53  Aligned_cols=244  Identities=13%  Similarity=0.177  Sum_probs=210.9

Q ss_pred             cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~  117 (415)
                      ...+|.+.|++++|+|+|++|++|+ |+.|+||++.+.+....  +..|...+.++.|++++.++++++.|     +.|+
T Consensus       610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~--~~~h~~~v~~~~~s~~~~~l~s~~~d-----~~v~  682 (1249)
T 3sfz_A          610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLD--IKAHEDEVLCCAFSSDDSYIATCSAD-----KKVK  682 (1249)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEETT-----SEEE
T ss_pred             EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEE--eccCCCCEEEEEEecCCCEEEEEeCC-----CeEE
Confidence            4568999999999999999999999 99999999998766554  44788999999999999999999988     9999


Q ss_pred             EEECCCCCEEEEEE-ccCceeEEEEcCC--eEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEE
Q 014977          118 IWDDHQSRCIGEFA-FRSDVRSVKLSRD--RIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC  191 (415)
Q Consensus       118 vwd~~~~~~~~~~~-~~~~i~~l~~~~~--~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  191 (415)
                      +||+.+++.+..+. |...|.+++|+|+  +.+++   .|+.|++||+.+++.+..+.+|...  +.++.+++++.++++
T Consensus       683 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~--v~~~~~sp~~~~l~s  760 (1249)
T 3sfz_A          683 IWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNS--VNHCRFSPDDELLAS  760 (1249)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSC--EEEEEECSSTTEEEE
T ss_pred             EEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCC--EEEEEEecCCCEEEE
Confidence            99999999999988 8999999999994  44555   6899999999999999999888874  445555566677776


Q ss_pred             eCCccCeEEEEEcCCcc-e------------------------------------------------------EEE-ecC
Q 014977          192 PGLQRGQVRIEHFGLNM-I------------------------------------------------------KLI-NAH  215 (415)
Q Consensus       192 ~g~~dg~v~i~~~~~~~-~------------------------------------------------------~~~-~~~  215 (415)
                       ++.||.|++|+..... .                                                      ..+ .+|
T Consensus       761 -~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~  839 (1249)
T 3sfz_A          761 -CSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGH  839 (1249)
T ss_dssp             -EESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSS
T ss_pred             -EECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCC
Confidence             6689999999865321 1                                                      111 267


Q ss_pred             ccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceeccc
Q 014977          216 DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV  295 (415)
Q Consensus       216 ~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~  295 (415)
                      ...+.+++|+|++.++++++.|+. |++||+.++..+..+.+  |...|.+++|+|+|++|++++.||.|++|++.+...
T Consensus       840 ~~~v~~~~~sp~~~~l~~~~~dg~-v~vwd~~~~~~~~~~~~--h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~  916 (1249)
T 3sfz_A          840 HSTIQYCDFSPYDHLAVIALSQYC-VELWNIDSRLKVADCRG--HLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCK  916 (1249)
T ss_dssp             SSCCCEEEECSSTTEEEEECSSSC-EEEEETTTTEEEEEECC--CSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHS
T ss_pred             CCceEEEEEcCCCCEEEEEeCCCe-EEEEEcCCCceeeecCC--CccceEEEEECCCCCEEEEEeCCCeEEEEEccccce
Confidence            888999999999999999999999 99999999999988887  888999999999999999999999999999987654

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=7.7e-30  Score=254.18  Aligned_cols=284  Identities=11%  Similarity=0.109  Sum_probs=219.4

Q ss_pred             cCCCCCCceEEEEEeCCCC-EEEEEe-CCcEEEEEccCCceeEEEeccCCCe---eEEEEeeeCC-eEEEEecCCCCCCC
Q 014977           39 FSDVDEIELISVSWNQDYG-CFAAGT-SCGFRIYNCEPFKETFRRDLKSGGF---RIVEMLFRCN-ILALVGAGDNSQYP  112 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~g~-~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~l~s~~~d~~~~  112 (415)
                      ...+|...|.+++|+|+++ +|++++ |+.|++||+.+.+....  +..+..   .+.++.|+++ +..+++++.|    
T Consensus       155 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----  228 (615)
T 1pgu_A          155 EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS--DRTHHKQGSFVRDVEFSPDSGEFVITVGSD----  228 (615)
T ss_dssp             ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEE--ECSSSCTTCCEEEEEECSTTCCEEEEEETT----
T ss_pred             eeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeee--ecccCCCCceEEEEEECCCCCCEEEEEeCC----
Confidence            4568999999999999998 788888 99999999987665443  446666   8999999999 9999998887    


Q ss_pred             CCeEEEEECCCCCEEEEE-----EccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccC------------
Q 014977          113 PTKVIIWDDHQSRCIGEF-----AFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLA------------  172 (415)
Q Consensus       113 ~~~i~vwd~~~~~~~~~~-----~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~------------  172 (415)
                       +.|++||+.+++.+..+     .|...|.+++|+ ++.+++   .|+.|++||+.+++.+..+..+.            
T Consensus       229 -g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (615)
T 1pgu_A          229 -RKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA  306 (615)
T ss_dssp             -CCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEE
T ss_pred             -CeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEe
Confidence             99999999999999998     688999999999 887776   58999999998777665554331            


Q ss_pred             ---------------------------------CCc-------------------------------ceEEEecCCC---
Q 014977          173 ---------------------------------NLR-------------------------------GLCCLSHHSS---  185 (415)
Q Consensus       173 ---------------------------------~~~-------------------------------~~~~~~~~~~---  185 (415)
                                                       ..+                               .+.++.+.+.   
T Consensus       307 ~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l  386 (615)
T 1pgu_A          307 TGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEY  386 (615)
T ss_dssp             EETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCC
T ss_pred             CCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEE
Confidence                                             000                               0111111101   


Q ss_pred             ---------------------------------------------------------------------ceEEEEeCCc-
Q 014977          186 ---------------------------------------------------------------------TSVLACPGLQ-  195 (415)
Q Consensus       186 ---------------------------------------------------------------------~~~l~~~g~~-  195 (415)
                                                                                           +.++++ ++. 
T Consensus       387 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~  465 (615)
T 1pgu_A          387 SSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAV-GLEE  465 (615)
T ss_dssp             EEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEE-EETT
T ss_pred             EEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEE-eecC
Confidence                                                                                 112222 223 


Q ss_pred             cCeEEEEEcCCcce--EEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCC--
Q 014977          196 RGQVRIEHFGLNMI--KLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSP--  271 (415)
Q Consensus       196 dg~v~i~~~~~~~~--~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp--  271 (415)
                      |+.|++|+......  ..+..|...|.+++|+|+|++|++++.|+. |++||+.+++.+..+... |...|++++|+|  
T Consensus       466 d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~-h~~~v~~~~~sp~~  543 (615)
T 1pgu_A          466 GNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGK-ILLYDLQSREVKTSRWAF-RTSKINAISWKPAE  543 (615)
T ss_dssp             TSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEECCSCC-CSSCEEEEEECCCC
T ss_pred             CCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCe-EEEeeCCCCcceeEeecC-CCCceeEEEEcCcc
Confidence            56666666554433  445678899999999999999999999999 999999999998777643 677999999999  


Q ss_pred             --------CCCEEEEEeCCCeEEEEEceecc-cCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCccccccccc
Q 014977          272 --------NVQWLAVASDKGTVHIFSLRVRV-VGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVL  342 (415)
Q Consensus       272 --------dg~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (415)
                              ++++|++++.||.|++||++++. ...                                             
T Consensus       544 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~---------------------------------------------  578 (615)
T 1pgu_A          544 KGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIK---------------------------------------------  578 (615)
T ss_dssp             ------CCSCCEEEEEETTSCEEEEESSCTTCCEE---------------------------------------------
T ss_pred             ccccccccCCCEEEEEcCCCcEEEEECCCCceech---------------------------------------------
Confidence                    99999999999999999998874 211                                             


Q ss_pred             CcccccccceEEEEeCCCceEEEEecCCCEEEEEEeCCcEEEEEEec
Q 014977          343 PKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dg~~~~~~~~~  389 (415)
                                 .+..+...+..++|++++.|++++.||.|++|+++.
T Consensus       579 -----------~~~~h~~~v~~l~~s~~~~l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          579 -----------ALNAHKDGVNNLLWETPSTLVSSGADACIKRWNVVL  614 (615)
T ss_dssp             -----------ETTSSTTCEEEEEEEETTEEEEEETTSCEEEEEEC-
T ss_pred             -----------hhhcCccceEEEEEcCCCCeEEecCCceEEEEeeec
Confidence                       111122456778999996688888899999999864

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=9.1e-30  Score=242.45  Aligned_cols=275  Identities=15%  Similarity=0.139  Sum_probs=223.3

Q ss_pred             ceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCC
Q 014977           46 ELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR  125 (415)
Q Consensus        46 ~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~  125 (415)
                      .++.|+|+++ .+||+|.|+.|+|||..+++......++.+...|.+++|++++.++++|+.|     +.|++||+.+++
T Consensus       107 y~~~l~wS~~-n~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~D-----g~v~iWd~~~~~  180 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS-----AEVQLWDVQQQK  180 (420)
T ss_dssp             TCBCEEECTT-SEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTE
T ss_pred             cceeEEECCC-CEEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECC-----CeEEEEEcCCCc
Confidence            3567999976 5899988999999999998766666666788899999999999999999988     999999999999


Q ss_pred             EEEEEE-ccCceeEEEEcCCeEEEE-eCCeEEEEEcCCc-eeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEE
Q 014977          126 CIGEFA-FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDL-KLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIE  202 (415)
Q Consensus       126 ~~~~~~-~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~  202 (415)
                      .+..+. |...+.++.+++.-.... .|+.+++||.... ..+..+..|..  .+..+.+.+++.++++ ++.|+.+++|
T Consensus       181 ~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~--~~~~~~~~~~g~~l~s-~~~D~~v~i~  257 (420)
T 4gga_A          181 RLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ--EVCGLRWAPDGRHLAS-GGNDNLVNVW  257 (420)
T ss_dssp             EEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSS--CEEEEEECTTSSEEEE-EETTSCEEEE
T ss_pred             EEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEeccccc--ceeeeeecCCCCeeee-eeccccceEE
Confidence            999888 899999999876543333 7999999998764 45566777776  4556666667778876 6689999998


Q ss_pred             EcCCc-----ceEEEecCccceEEEEeCCCCC-EEEE--EeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCC
Q 014977          203 HFGLN-----MIKLINAHDSHIACFTLTLDGL-LLAT--ASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQ  274 (415)
Q Consensus       203 ~~~~~-----~~~~~~~~~~~i~~l~~sp~g~-~l~s--~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~  274 (415)
                      +....     .+.....|...|.+++|+|++. ++++  |+.|+. |++||+.+++.+..+..   ...+.++.|+|+++
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~-I~iwd~~t~~~~~~~~~---~~~v~~~~~~~~~~  333 (420)
T 4gga_A          258 PSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH-IRIWNVCSGACLSAVDA---HSQVCSILWSPHYK  333 (420)
T ss_dssp             ESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCE-EEEEETTTTEEEEEEEC---SSCEEEEEEETTTT
T ss_pred             eeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCE-EEEEeCCccccceeecc---ccceeeeeecCCCC
Confidence            87542     3566778999999999999664 5555  457999 99999999999988875   35789999999999


Q ss_pred             EEEEEe--CCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccce
Q 014977          275 WLAVAS--DKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSF  352 (415)
Q Consensus       275 ~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (415)
                      .|++++  .|+.|+|||+.+++...                                                       
T Consensus       334 ~lv~~sg~~d~~I~iwd~~~~~~v~-------------------------------------------------------  358 (420)
T 4gga_A          334 ELISGHGFAQNQLVIWKYPTMAKVA-------------------------------------------------------  358 (420)
T ss_dssp             EEEEEECTTTCCEEEEETTTCCEEE-------------------------------------------------------
T ss_pred             eEEEEEecCCCEEEEEECCCCcEEE-------------------------------------------------------
Confidence            988765  78999999998877542                                                       


Q ss_pred             EEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977          353 AQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~  389 (415)
                       .++-+.+.+..++|+|+ ..|++++.||.|++|++..
T Consensus       359 -~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~  395 (420)
T 4gga_A          359 -ELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE  395 (420)
T ss_dssp             -EECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred             -EEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence             22223356777899998 6788888899999999865

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=2e-30  Score=258.36  Aligned_cols=240  Identities=11%  Similarity=0.117  Sum_probs=203.5

Q ss_pred             CCCCCCceEEEEEeCCCCEEEEEeCCcEEEEEccCC----ceeEEEeccCCCee-EEEEeeeC--CeEEEEecCCCCCCC
Q 014977           40 SDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPF----KETFRRDLKSGGFR-IVEMLFRC--NILALVGAGDNSQYP  112 (415)
Q Consensus        40 ~~~h~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~----~~~~~~~~~~~~~~-~~~~~~~~--~~~~l~s~~~d~~~~  112 (415)
                      ...|.+.|.+++|+|++++|++++++.|+||++++.    +....  +..|... +.++.|+|  ++.++++++.|    
T Consensus        14 ~~~~~~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~--~~~h~~~~v~~~~~sp~~~~~~l~s~~~d----   87 (615)
T 1pgu_A           14 PSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQ--FTGHGSSVVTTVKFSPIKGSQYLCSGDES----   87 (615)
T ss_dssp             CCCCTTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEE--ECTTTTSCEEEEEECSSTTCCEEEEEETT----
T ss_pred             CCCccCceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceE--EecCCCceEEEEEECcCCCCCEEEEecCC----
Confidence            346889999999999999999999999999999876    44333  4578888 99999999  99999999988    


Q ss_pred             CCeEEEEECCCC--------CEEEEEE-ccCceeEEEEcCCeEEEE---eC----CeEEEEEcCCceeeeEEeccCCCcc
Q 014977          113 PTKVIIWDDHQS--------RCIGEFA-FRSDVRSVKLSRDRIVVV---LE----HKIYVYSFVDLKLLHQIETLANLRG  176 (415)
Q Consensus       113 ~~~i~vwd~~~~--------~~~~~~~-~~~~i~~l~~~~~~~~~~---~d----~~i~iwd~~~~~~~~~~~~~~~~~~  176 (415)
                       +.|++||+.++        +.+..+. |...|.+++|+|++.+++   .+    +.|++||  .++.+..+..|...  
T Consensus        88 -g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~--  162 (615)
T 1pgu_A           88 -GKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQR--  162 (615)
T ss_dssp             -SEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSC--
T ss_pred             -CEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCcc--
Confidence             99999999754        5666666 889999999999999888   23    5788887  56777788877774  


Q ss_pred             eEEEecCCCce-EEEEeCCccCeEEEEEcCC-cceEEEecCcc---ceEEEEeCCC-CCEEEEEeCCCcEEEEEECCCCc
Q 014977          177 LCCLSHHSSTS-VLACPGLQRGQVRIEHFGL-NMIKLINAHDS---HIACFTLTLD-GLLLATASTRGTLIRIFNTVDGT  250 (415)
Q Consensus       177 ~~~~~~~~~~~-~l~~~g~~dg~v~i~~~~~-~~~~~~~~~~~---~i~~l~~sp~-g~~l~s~s~dg~~I~vwd~~~~~  250 (415)
                      +.++.+++++. .++ +++.|+.|++|+... +.+..+..|..   .|.+++|+|+ +++|++++.|+. |++||+.+++
T Consensus       163 v~~~~~~~~~~~~l~-~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~  240 (615)
T 1pgu_A          163 INACHLKQSRPMRSM-TVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK-ISCFDGKSGE  240 (615)
T ss_dssp             EEEEEECSSSSCEEE-EEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC-EEEEETTTCC
T ss_pred             EEEEEECCCCCcEEE-EEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCe-EEEEECCCCC
Confidence            55555566665 444 477899999998654 56677888998   9999999999 999999999999 9999999999


Q ss_pred             EEEEE-e---cCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceeccc
Q 014977          251 RLQEV-R---RGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV  295 (415)
Q Consensus       251 ~~~~~-~---~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~  295 (415)
                      .+..+ .   .  |...|.+++|+ ++++|++++.||.|++||+++++.
T Consensus       241 ~~~~~~~~~~~--~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~  286 (615)
T 1pgu_A          241 FLKYIEDDQEP--VQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKC  286 (615)
T ss_dssp             EEEECCBTTBC--CCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEE
T ss_pred             EeEEecccccc--cCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcE
Confidence            99888 4   4  78899999999 999999999999999999988764

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.98  E-value=8.3e-31  Score=243.94  Aligned_cols=238  Identities=13%  Similarity=0.169  Sum_probs=198.6

Q ss_pred             CCCCceEEEEEeCC----CCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCe
Q 014977           42 VDEIELISVSWNQD----YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTK  115 (415)
Q Consensus        42 ~h~~~V~~l~~sp~----g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~  115 (415)
                      .|...|++++|+|+    +.+|++|+ |+.|++||+.+.+....  +..+...+.++.|++ ++..+++++.|     +.
T Consensus        67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~l~s~~~d-----g~  139 (366)
T 3k26_A           67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKH--YVGHGNAINELKFHPRDPNLLLSVSKD-----HA  139 (366)
T ss_dssp             CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEE--EESCCSCEEEEEECSSCTTEEEEEETT-----SC
T ss_pred             CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeee--ecCCCCcEEEEEECCCCCCEEEEEeCC-----Ce
Confidence            47889999999999    67999999 99999999998665444  447888999999999 88889998887     99


Q ss_pred             EEEEECCCCCEEEEE----EccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEec------------------
Q 014977          116 VIIWDDHQSRCIGEF----AFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIET------------------  170 (415)
Q Consensus       116 i~vwd~~~~~~~~~~----~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~------------------  170 (415)
                      |++||+.+++.+..+    .|...|.+++|+|++..++   .|+.|++||+.+++....+..                  
T Consensus       140 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (366)
T 3k26_A          140 LRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKI  219 (366)
T ss_dssp             EEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEE
T ss_pred             EEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceee
Confidence            999999999999988    3899999999999998877   689999999988765544432                  


Q ss_pred             ----------cCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC---------------cceEEEecCccceEEEEeC
Q 014977          171 ----------LANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL---------------NMIKLINAHDSHIACFTLT  225 (415)
Q Consensus       171 ----------~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~---------------~~~~~~~~~~~~i~~l~~s  225 (415)
                                |...+..+++.    +.++++ ++.|+.|++|+...               ..+..+..|...|.+++|+
T Consensus       220 ~~~~~~~~~~~~~~v~~~~~~----~~~l~~-~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  294 (366)
T 3k26_A          220 HFPDFSTRDIHRNYVDCVRWL----GDLILS-KSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFS  294 (366)
T ss_dssp             CCCSEEECSSCSSCCCEEEEE----TTEEEE-ECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCE
T ss_pred             ccCccccccCCcceEEEEEEc----CCEEEE-EecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEc
Confidence                      56555555554    335655 67899999998764               2366778899999999999


Q ss_pred             CC--CCEEEEEeCCCcEEEEEECCCCc----EEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEcee
Q 014977          226 LD--GLLLATASTRGTLIRIFNTVDGT----RLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV  292 (415)
Q Consensus       226 p~--g~~l~s~s~dg~~I~vwd~~~~~----~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~  292 (415)
                      |+  +++|++++.||. |++||+.+++    ....+..+.+...|.+++|+|++++|++++.||.|++||+.+
T Consensus       295 ~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          295 MDFWQKMLALGNQVGK-LYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             ECTTSSEEEEECTTSC-EEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             CCCCCcEEEEEecCCc-EEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence            99  999999999999 9999999875    445677643478999999999999999999999999999864

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.98  E-value=4.1e-30  Score=233.24  Aligned_cols=247  Identities=12%  Similarity=0.119  Sum_probs=193.0

Q ss_pred             ccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCC--CCEEEEEE-ccCceeEEEEcCC--eEEEE---eCCeE
Q 014977           83 LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ--SRCIGEFA-FRSDVRSVKLSRD--RIVVV---LEHKI  154 (415)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~--~~~~~~~~-~~~~i~~l~~~~~--~~~~~---~d~~i  154 (415)
                      +.+|...|.+++|++++..|++++.|     +.|++||+..  .+.+..+. |...|.+++|+++  +.+++   .|++|
T Consensus         5 ~~~h~~~V~~~~~s~~g~~las~s~D-----~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v   79 (297)
T 2pm7_B            5 ANAHNEMIHDAVMDYYGKRMATCSSD-----KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV   79 (297)
T ss_dssp             CCSCSSCEEEEEECTTSSEEEEEETT-----SCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEE
T ss_pred             ccCCcCceEEEEECCCCCEEEEEeCC-----CEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEE
Confidence            44788899999999999999999988     9999999874  36677777 9999999999863  66666   69999


Q ss_pred             EEEEcCCce--eeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCc---ceEEEecCccceEEEEeCCC--
Q 014977          155 YVYSFVDLK--LLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN---MIKLINAHDSHIACFTLTLD--  227 (415)
Q Consensus       155 ~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~---~~~~~~~~~~~i~~l~~sp~--  227 (415)
                      ++||+.+++  .+..+..|...+..++++++..+.+|++ ++.|+.|++|+....   ....+.+|...|.+++|+|+  
T Consensus        80 ~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s-~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~  158 (297)
T 2pm7_B           80 MIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLV-ASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI  158 (297)
T ss_dssp             EEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEE-EETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-
T ss_pred             EEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEE-EECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcc
Confidence            999998764  4556666777555555555433667765 678999999987653   24667899999999999997  


Q ss_pred             -----------CCEEEEEeCCCcEEEEEECCCCc----EEEEEecCCCcccEEEEEeCCCC---CEEEEEeCCCeEEEEE
Q 014977          228 -----------GLLLATASTRGTLIRIFNTVDGT----RLQEVRRGVDRAEIYSIALSPNV---QWLAVASDKGTVHIFS  289 (415)
Q Consensus       228 -----------g~~l~s~s~dg~~I~vwd~~~~~----~~~~~~~~~~~~~v~~l~~spdg---~~l~s~s~dg~i~vwd  289 (415)
                                 +++|++|+.|+. |+|||+++++    ....+.+  |...|.+++|+|++   .+|++++.|++|+|||
T Consensus       159 ~~~~~~~~~~~~~~l~sgs~D~~-v~lwd~~~~~~~~~~~~~l~~--H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd  235 (297)
T 2pm7_B          159 EEDGEHNGTKESRKFVTGGADNL-VKIWKYNSDAQTYVLESTLEG--HSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWT  235 (297)
T ss_dssp             -----------CCEEEEEETTSC-EEEEEEETTTTEEEEEEEECC--CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred             cccccCCCCCCcceEEEEcCCCc-EEEEEEcCCCceEEEEEEecC--CCCceEEEEECCCCCCceEEEEEECCCcEEEEE
Confidence                       579999999999 9999998776    5566776  88899999999985   8999999999999999


Q ss_pred             ceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecC
Q 014977          290 LRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGS  369 (415)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (415)
                      ++++....                                   .     ...+.    .       .-....+..++|++
T Consensus       236 ~~~~~~~~-----------------------------------~-----~~~~~----~-------~~~~~~v~~~~~s~  264 (297)
T 2pm7_B          236 QDNEQGPW-----------------------------------K-----KTLLK----E-------EKFPDVLWRASWSL  264 (297)
T ss_dssp             ESSTTSCC-----------------------------------E-----EEESS----S-------SCCSSCEEEEEECS
T ss_pred             eCCCCCcc-----------------------------------c-----eeeee----c-------ccCCCcEEEEEECC
Confidence            97753210                                   0     00000    0       00124566789999


Q ss_pred             C-CEEEEEEeCCcEEEEEEec
Q 014977          370 Q-NTVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       370 ~-~~i~~~~~dg~~~~~~~~~  389 (415)
                      + +.|++++.||.|++|+...
T Consensus       265 ~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          265 SGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             SSCCEEEEETTSCEEEEEECT
T ss_pred             CCCEEEEEcCCCcEEEEEECC
Confidence            8 6778888899999999875

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.98  E-value=6.7e-30  Score=241.85  Aligned_cols=246  Identities=12%  Similarity=0.117  Sum_probs=196.7

Q ss_pred             CCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEE
Q 014977           41 DVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIW  119 (415)
Q Consensus        41 ~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vw  119 (415)
                      ..|...|.+++|+|++++|++|+ ||.|++|++++.+....  +..+...+.++.|+++  .+++++.|     +.|++|
T Consensus       131 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~--~l~~~~~d-----g~i~i~  201 (401)
T 4aez_A          131 TDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRT--MAGHQARVGCLSWNRH--VLSSGSRS-----GAIHHH  201 (401)
T ss_dssp             CCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE--ECCCSSCEEEEEEETT--EEEEEETT-----SEEEEE
T ss_pred             cCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEE--ecCCCCceEEEEECCC--EEEEEcCC-----CCEEEE
Confidence            34889999999999999999999 99999999988665444  4478888999999654  66677776     999999


Q ss_pred             ECC-CCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEe-C
Q 014977          120 DDH-QSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP-G  193 (415)
Q Consensus       120 d~~-~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g  193 (415)
                      |+. .+..+..+. |...|.+++|+|++.+++   .|+.|++||+.+++.+..+..|...+..++++++... ++++. |
T Consensus       202 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~-ll~~~~g  280 (401)
T 4aez_A          202 DVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSN-LLATGGG  280 (401)
T ss_dssp             ETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTT-EEEEECC
T ss_pred             ecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCC-EEEEecC
Confidence            998 456666666 899999999999998887   5899999999999999888888876666666654433 33332 3


Q ss_pred             CccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEE--eCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCC
Q 014977          194 LQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATA--STRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSP  271 (415)
Q Consensus       194 ~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~--s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp  271 (415)
                      +.|+.|++|+...........+...|.+++|+|++++|+++  +.||. |++||+.+++.........|...|.+++|+|
T Consensus       281 s~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~-i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~  359 (401)
T 4aez_A          281 TMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNN-LSIWSYSSSGLTKQVDIPAHDTRVLYSALSP  359 (401)
T ss_dssp             TTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCE-EEEEEEETTEEEEEEEEECCSSCCCEEEECT
T ss_pred             CCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCc-EEEEecCCccceeEEEecCCCCCEEEEEECC
Confidence            48999999997654443334577899999999999999985  48999 9999999876655433222788999999999


Q ss_pred             CCCEEEEEeCCCeEEEEEceecccCC
Q 014977          272 NVQWLAVASDKGTVHIFSLRVRVVGE  297 (415)
Q Consensus       272 dg~~l~s~s~dg~i~vwd~~~~~~~~  297 (415)
                      ++++|++++.||.|++|++.+++...
T Consensus       360 dg~~l~s~~~dg~i~iw~~~~~~~~~  385 (401)
T 4aez_A          360 DGRILSTAASDENLKFWRVYDGDHVK  385 (401)
T ss_dssp             TSSEEEEECTTSEEEEEECCC-----
T ss_pred             CCCEEEEEeCCCcEEEEECCCCcccc
Confidence            99999999999999999999987653

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.98  E-value=2e-29  Score=240.03  Aligned_cols=245  Identities=12%  Similarity=0.141  Sum_probs=199.5

Q ss_pred             CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEE
Q 014977           40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII  118 (415)
Q Consensus        40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~v  118 (415)
                      ..+|...|++|+|+|+|++||+|+ |+.|+|||+++.+.+..  +..|...+.++.+++  ..+++++.|     +.+++
T Consensus       143 ~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~--~~~h~~~v~~~s~~~--~~l~sgs~d-----~~i~~  213 (420)
T 4gga_A          143 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN--MTSHSARVGSLSWNS--YILSSGSRS-----GHIHH  213 (420)
T ss_dssp             CCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE--ECCCSSCEEEEEEET--TEEEEEETT-----SEEEE
T ss_pred             ecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE--EeCCCCceEEEeeCC--CEEEEEeCC-----CceeE
Confidence            357888999999999999999999 99999999998765544  447888888887765  467777777     99999


Q ss_pred             EECCCC-CEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCcee----eeEEeccCCCcceEEEecCCCceEE
Q 014977          119 WDDHQS-RCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKL----LHQIETLANLRGLCCLSHHSSTSVL  189 (415)
Q Consensus       119 wd~~~~-~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l  189 (415)
                      ||.... ..+..+. |...+..+.+++++..++   .|+.+++|+..+++.    +.....+...+..+++.+.....+.
T Consensus       214 ~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la  293 (420)
T 4gga_A          214 HDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLA  293 (420)
T ss_dssp             EETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEE
T ss_pred             eeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEE
Confidence            998765 4555566 899999999999999888   699999999977643    3455566665555666665544444


Q ss_pred             EEeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEe--CCCcEEEEEECCCCcEEEEEecCCCcccEEEE
Q 014977          190 ACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATAS--TRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSI  267 (415)
Q Consensus       190 ~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s--~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l  267 (415)
                      ..+|+.|++|++|+...........+...+.++.|+|+++.|++++  .|+. |+|||+.+++++.++.+  |.+.|+++
T Consensus       294 ~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~-I~iwd~~~~~~v~~l~g--H~~~V~~l  370 (420)
T 4gga_A          294 TGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQ-LVIWKYPTMAKVAELKG--HTSRVLSL  370 (420)
T ss_dssp             EEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCC-EEEEETTTCCEEEEECC--CSSCEEEE
T ss_pred             EEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCE-EEEEECCCCcEEEEEcC--CCCCEEEE
Confidence            4457789999999987655544445567889999999999888765  7899 99999999999999998  88899999


Q ss_pred             EeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977          268 ALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       268 ~~spdg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                      +|+|||++|++|+.|++|+|||+.+..+.
T Consensus       371 ~~spdg~~l~S~s~D~tvriWdv~~~~~~  399 (420)
T 4gga_A          371 TMSPDGATVASAAADETLRLWRCFELDPA  399 (420)
T ss_dssp             EECTTSSCEEEEETTTEEEEECCSCSSCC
T ss_pred             EEcCCCCEEEEEecCCeEEEEECCCCCcc
Confidence            99999999999999999999999876543

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.98  E-value=2.8e-30  Score=243.53  Aligned_cols=243  Identities=16%  Similarity=0.163  Sum_probs=202.6

Q ss_pred             ccCCCCCCceEEEEEeCC----C---CEEEEEe-CCcEEEEEccCCce-----eEEEeccCC-----CeeEEEEeee---
Q 014977           38 AFSDVDEIELISVSWNQD----Y---GCFAAGT-SCGFRIYNCEPFKE-----TFRRDLKSG-----GFRIVEMLFR---   96 (415)
Q Consensus        38 ~~~~~h~~~V~~l~~sp~----g---~~la~g~-d~~v~iw~~~~~~~-----~~~~~~~~~-----~~~~~~~~~~---   96 (415)
                      ....+|...|.+++|+|+    +   ++|++++ |+.|++|++.+.+.     ...  +..+     ...+.++.|+   
T Consensus        56 ~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~  133 (397)
T 1sq9_A           56 YSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEK--LDLLDSDMKKHSFWALKWGASN  133 (397)
T ss_dssp             EEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEE--ECCSCTTGGGSCEEEEEEECCC
T ss_pred             eEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccccccccee--ecccccccCCCcEEEEEEeecc
Confidence            345689999999999999    9   9999999 99999999987553     333  3345     4889999999   


Q ss_pred             -CCeEE-EEecCCCCCCCCCeEEEEECCC------CCEEE-----EEE--------ccCceeEEEEcCCeEEEE---eCC
Q 014977           97 -CNILA-LVGAGDNSQYPPTKVIIWDDHQ------SRCIG-----EFA--------FRSDVRSVKLSRDRIVVV---LEH  152 (415)
Q Consensus        97 -~~~~~-l~s~~~d~~~~~~~i~vwd~~~------~~~~~-----~~~--------~~~~i~~l~~~~~~~~~~---~d~  152 (415)
                       +++.. +++++.|     +.|++||+.+      ++.+.     .+.        |...|.+++|+|++ +++   .|+
T Consensus       134 ~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg  207 (397)
T 1sq9_A          134 DRLLSHRLVATDVK-----GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNG  207 (397)
T ss_dssp             ----CEEEEEEETT-----SCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTS
T ss_pred             CCCCceEEEEEeCC-----CcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCC
Confidence             99988 8888887     9999999988      65554     553        68899999999999 666   689


Q ss_pred             eEEEEEcCCceeeeEEec---c---CCCcceEEEecCCCceEEEEeCCcc---CeEEEEEcC-CcceEEEec--------
Q 014977          153 KIYVYSFVDLKLLHQIET---L---ANLRGLCCLSHHSSTSVLACPGLQR---GQVRIEHFG-LNMIKLINA--------  214 (415)
Q Consensus       153 ~i~iwd~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~l~~~g~~d---g~v~i~~~~-~~~~~~~~~--------  214 (415)
                      .|++||+++++.+..+..   |   ..  .+.++.+++++.+|++ ++.|   +.|++|+.. .+.+..+..        
T Consensus       208 ~i~i~d~~~~~~~~~~~~~~~h~~~~~--~i~~i~~~~~~~~l~~-~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~  284 (397)
T 1sq9_A          208 TVQISELSTLRPLYNFESQHSMINNSN--SIRSVKFSPQGSLLAI-AHDSNSFGCITLYETEFGERIGSLSVPTHSSQAS  284 (397)
T ss_dssp             EEEEEETTTTEEEEEEECCC---CCCC--CEEEEEECSSTTEEEE-EEEETTEEEEEEEETTTCCEEEEECBC-------
T ss_pred             cEEEEECCCCceeEEEeccccccccCC--ccceEEECCCCCEEEE-EecCCCCceEEEEECCCCcccceeccCccccccc
Confidence            999999999999998887   6   55  4556666667778876 6678   999999865 566777887        


Q ss_pred             -----CccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEe------cCCC---------------cccEEEEE
Q 014977          215 -----HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVR------RGVD---------------RAEIYSIA  268 (415)
Q Consensus       215 -----~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~------~~~~---------------~~~v~~l~  268 (415)
                           |...|.+++|+|++++|++++.|+. |++||+++++.+..+.      .  |               ...|.+++
T Consensus       285 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~v~~~~  361 (397)
T 1sq9_A          285 LGEFAHSSWVMSLSFNDSGETLCSAGWDGK-LRFWDVKTKERITTLNMHCDDIE--IEEDILAVDEHGDSLAEPGVFDVK  361 (397)
T ss_dssp             -CCBSBSSCEEEEEECSSSSEEEEEETTSE-EEEEETTTTEEEEEEECCGGGCS--SGGGCCCBCTTSCBCSSCCEEEEE
T ss_pred             ccccccCCcEEEEEECCCCCEEEEEeCCCe-EEEEEcCCCceeEEEecccCccc--chhhhhccccccccccCCceeEEE
Confidence                 9999999999999999999999999 9999999999999998      5  5               78999999


Q ss_pred             eCCCC----------CEEEEEeCCCeEEEEEceecc
Q 014977          269 LSPNV----------QWLAVASDKGTVHIFSLRVRV  294 (415)
Q Consensus       269 ~spdg----------~~l~s~s~dg~i~vwd~~~~~  294 (415)
                      |+|++          ++|++++.||.|++|++++++
T Consensus       362 ~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          362 FLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             EECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             eccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence            99998          799999999999999998864

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=2.7e-29  Score=240.32  Aligned_cols=279  Identities=11%  Similarity=0.216  Sum_probs=217.3

Q ss_pred             CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEE
Q 014977           40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII  118 (415)
Q Consensus        40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~v  118 (415)
                      ..+|...|.+++|  ++++|++|+ |+.|++||+.+.+....  +..|...+.++.|  ++..+++++.|     +.|++
T Consensus       129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~--~~~h~~~v~~l~~--~~~~l~sg~~d-----g~i~v  197 (435)
T 1p22_A          129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRI--LTGHTGSVLCLQY--DERVIITGSSD-----STVRV  197 (435)
T ss_dssp             CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEE--ECCCSSCEEEEEC--CSSEEEEEETT-----SCEEE
T ss_pred             ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEE--EcCCCCcEEEEEE--CCCEEEEEcCC-----CeEEE
Confidence            4567788998877  789999999 99999999988665444  4478888999988  55677888877     99999


Q ss_pred             EECCCCCEEEEEE-ccCceeEEEEcCCeEEEE-eCCeEEEEEcCCceee---eEEeccCCCcceEEEecCCCceEEEEeC
Q 014977          119 WDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLL---HQIETLANLRGLCCLSHHSSTSVLACPG  193 (415)
Q Consensus       119 wd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~g  193 (415)
                      ||+.+++.+..+. |...|.+++|+++....+ .|+.|++||+.+++..   ..+..|..  .+.++.++  +.++++ |
T Consensus       198 wd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~--~v~~~~~~--~~~l~s-~  272 (435)
T 1p22_A          198 WDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA--AVNVVDFD--DKYIVS-A  272 (435)
T ss_dssp             EESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSS--CEEEEEEE--TTEEEE-E
T ss_pred             EECCCCcEEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCC--cEEEEEeC--CCEEEE-E
Confidence            9999999999887 899999999987633333 7999999999887655   45566666  44555553  446665 6


Q ss_pred             CccCeEEEEEcC-CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCC
Q 014977          194 LQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPN  272 (415)
Q Consensus       194 ~~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spd  272 (415)
                      +.||.|++|+.. ++.+..+.+|...|.++++  ++.+|++|+.||. |++||+++++.+..+.+  |...|.+++|  +
T Consensus       273 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~-i~iwd~~~~~~~~~~~~--h~~~v~~~~~--~  345 (435)
T 1p22_A          273 SGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNT-IRLWDIECGACLRVLEG--HEELVRCIRF--D  345 (435)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSC-EEEEETTTCCEEEEECC--CSSCEEEEEC--C
T ss_pred             eCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCe-EEEEECCCCCEEEEEeC--CcCcEEEEEe--c
Confidence            689999999865 4667888999999999999  5689999999999 99999999999999988  8889999999  7


Q ss_pred             CCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccce
Q 014977          273 VQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSF  352 (415)
Q Consensus       273 g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (415)
                      +.+|++|+.||.|++||+.+++.......                                               ....
T Consensus       346 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-----------------------------------------------~~~~  378 (435)
T 1p22_A          346 NKRIVSGAYDGKIKVWDLVAALDPRAPAG-----------------------------------------------TLCL  378 (435)
T ss_dssp             SSEEEEEETTSCEEEEEHHHHTSTTSCTT-----------------------------------------------TTEE
T ss_pred             CCEEEEEeCCCcEEEEECCCCCCcccccc-----------------------------------------------chhe
Confidence            89999999999999999998764310000                                               0001


Q ss_pred             EEEEeCCCceEEEEecCCCEEEEEEeCCcEEEEEEec
Q 014977          353 AQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~i~~~~~dg~~~~~~~~~  389 (415)
                      ..+....+.+..++| ....+++++.||.|++|++..
T Consensus       379 ~~~~~h~~~v~~l~~-~~~~l~s~s~Dg~i~iwd~~~  414 (435)
T 1p22_A          379 RTLVEHSGRVFRLQF-DEFQIVSSSHDDTILIWDFLN  414 (435)
T ss_dssp             EEECCCSSCCCCEEE-CSSCEEECCSSSEEEEEC---
T ss_pred             eeccCCCCCeEEEEe-CCCEEEEEeCCCEEEEEECCC
Confidence            122223344555677 337788888999999999976

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.97  E-value=3.6e-30  Score=235.73  Aligned_cols=246  Identities=15%  Similarity=0.160  Sum_probs=191.1

Q ss_pred             ccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCC--EEEEEE-ccCceeEEEEcC--CeEEEE---eCCeE
Q 014977           83 LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR--CIGEFA-FRSDVRSVKLSR--DRIVVV---LEHKI  154 (415)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~--~~~~~~-~~~~i~~l~~~~--~~~~~~---~d~~i  154 (415)
                      +.+|...|.++.|++++..|++++.|     +.|++||+.+++  .+..+. |...|.+++|++  ++.+++   .|++|
T Consensus         9 ~~~H~~~V~~v~~s~~g~~lasgs~D-----~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v   83 (316)
T 3bg1_A            9 DTSHEDMIHDAQMDYYGTRLATCSSD-----RSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKV   83 (316)
T ss_dssp             -----CCEEEEEECGGGCEEEEEETT-----TEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCE
T ss_pred             cccccCeEEEeeEcCCCCEEEEEeCC-----CeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEE
Confidence            45788899999999999999999988     999999998875  355666 899999999986  356665   69999


Q ss_pred             EEEEcCCce--eeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcc----eEEEecCccceEEEEeCCC-
Q 014977          155 YVYSFVDLK--LLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNM----IKLINAHDSHIACFTLTLD-  227 (415)
Q Consensus       155 ~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~----~~~~~~~~~~i~~l~~sp~-  227 (415)
                      ++||+++++  .+..+..|...+..++++++.++.+|++ |+.|+.|++|+.....    ...+.+|...+.+++|+|+ 
T Consensus        84 ~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~las-gs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  162 (316)
T 3bg1_A           84 IIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILAC-GSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAV  162 (316)
T ss_dssp             EEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEE-ECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCC
T ss_pred             EEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEE-EcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcccc
Confidence            999998763  5566777887777777776655677776 7799999999887542    2345678899999999997 


Q ss_pred             ----------------CCEEEEEeCCCcEEEEEECCCC---cEEEEEecCCCcccEEEEEeCCCC----CEEEEEeCCCe
Q 014977          228 ----------------GLLLATASTRGTLIRIFNTVDG---TRLQEVRRGVDRAEIYSIALSPNV----QWLAVASDKGT  284 (415)
Q Consensus       228 ----------------g~~l~s~s~dg~~I~vwd~~~~---~~~~~~~~~~~~~~v~~l~~spdg----~~l~s~s~dg~  284 (415)
                                      +++|++++.|+. |++||++.+   +.+..+.+  |...|.+++|+|++    .+|++++.|++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~l~sgs~D~~-v~lWd~~~~~~~~~~~~l~~--h~~~V~~v~~sp~~~~~~~~las~s~D~~  239 (316)
T 3bg1_A          163 VPGSLIDHPSGQKPNYIKRFASGGCDNL-IKLWKEEEDGQWKEEQKLEA--HSDWVRDVAWAPSIGLPTSTIASCSQDGR  239 (316)
T ss_dssp             CC------CCSCCCCCCCBEECCBTTSB-CCEEEECTTSCEEEEECCBC--CSSCEEEEECCCCSSCSCCEEEEEETTCE
T ss_pred             CCccccccccccCccccceEEEecCCCe-EEEEEeCCCCccceeeeccc--CCCceEEEEecCCCCCCCceEEEEcCCCe
Confidence                            478999999999 999999765   35566666  88899999999987    89999999999


Q ss_pred             EEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEE
Q 014977          285 VHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFI  364 (415)
Q Consensus       285 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (415)
                      |+||++++.....                                           ...         ..+.-....+..
T Consensus       240 v~iw~~~~~~~~~-------------------------------------------~~~---------~~~~~~~~~v~~  267 (316)
T 3bg1_A          240 VFIWTCDDASSNT-------------------------------------------WSP---------KLLHKFNDVVWH  267 (316)
T ss_dssp             EEEEECSSTTCCC-------------------------------------------CBC---------CEEEECSSCEEE
T ss_pred             EEEEEccCccccc-------------------------------------------hhh---------hhhhcCCCcEEE
Confidence            9999998743210                                           000         011112356778


Q ss_pred             EEecCC-CEEEEEEeCCcEEEEEEec
Q 014977          365 AAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       365 ~~~~~~-~~i~~~~~dg~~~~~~~~~  389 (415)
                      ++|+|+ +.|++++.||.|++|....
T Consensus       268 v~~sp~g~~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          268 VSWSITANILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             EEECTTTCCEEEEESSSCEEEEEECT
T ss_pred             EEEcCCCCEEEEEcCCCeEEEEEECC
Confidence            899998 6788888899999999875

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.97  E-value=3.2e-28  Score=234.60  Aligned_cols=240  Identities=13%  Similarity=0.160  Sum_probs=194.6

Q ss_pred             cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeee--CCeEEEEecCCCCCCCCCe
Q 014977           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFR--CNILALVGAGDNSQYPPTK  115 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~s~~~d~~~~~~~  115 (415)
                      ...+|.+.|.+++|+|++ +|++|+ |+.|++||+++.+....  +..|...+.++.+.  +++..+++++.|     +.
T Consensus       157 ~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~~~l~s~s~d-----~~  228 (464)
T 3v7d_B          157 QLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHV--FEGHNSTVRCLDIVEYKNIKYIVTGSRD-----NT  228 (464)
T ss_dssp             EECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEE--ECCCSSCEEEEEEEESSSCEEEEEEETT-----SC
T ss_pred             EEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEE--ECCCCCccEEEEEecCCCCCEEEEEcCC-----Cc
Confidence            346899999999999988 888888 99999999998665443  44677778777777  678899999988     99


Q ss_pred             EEEEECCCCCE-----------------------EEEEE-ccCceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEec
Q 014977          116 VIIWDDHQSRC-----------------------IGEFA-FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIET  170 (415)
Q Consensus       116 i~vwd~~~~~~-----------------------~~~~~-~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~  170 (415)
                      |++||+.+++.                       +..+. |...+.++....+-...+ .|+.|++||+.+++.+..+..
T Consensus       229 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~  308 (464)
T 3v7d_B          229 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG  308 (464)
T ss_dssp             EEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             EEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC
Confidence            99999987753                       23333 677777775443333333 699999999999999999988


Q ss_pred             cCCCcceEEEecCCCceEEEEeCCccCeEEEEEcC-CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC
Q 014977          171 LANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG  249 (415)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~  249 (415)
                      |...  +.++.+++++.++++ |+.||.|++|+.. ++.+..+.+|...|.+++|+  +.+|++++.||. |++||+.++
T Consensus       309 ~~~~--v~~~~~~~~~~~l~s-g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~-v~vwd~~~~  382 (464)
T 3v7d_B          309 HTDR--IYSTIYDHERKRCIS-ASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGS-IRGWDANDY  382 (464)
T ss_dssp             CSSC--EEEEEEETTTTEEEE-EETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSE-EEEEETTTC
T ss_pred             CCCC--EEEEEEcCCCCEEEE-EeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCc-EEEEECCCC
Confidence            8774  455555566667776 6789999999974 67788899999999999997  579999999999 999999998


Q ss_pred             cEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977          250 TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       250 ~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                      +....+.   +...+..++|++++++|++++ ||.|++||+++++..
T Consensus       383 ~~~~~~~---~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~  425 (464)
T 3v7d_B          383 SRKFSYH---HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLV  425 (464)
T ss_dssp             CEEEEEE---CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEE
T ss_pred             ceeeeec---CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEE
Confidence            8776665   455678889999999999998 899999999998754

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.3e-28  Score=236.69  Aligned_cols=239  Identities=11%  Similarity=0.102  Sum_probs=190.9

Q ss_pred             CCceEEEEEeCCCCEEEEEeCCcEEEEEccCCc---eeEEEec-------------------------------------
Q 014977           44 EIELISVSWNQDYGCFAAGTSCGFRIYNCEPFK---ETFRRDL-------------------------------------   83 (415)
Q Consensus        44 ~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~---~~~~~~~-------------------------------------   83 (415)
                      ..++.+++|+++|++|+++.++.|++||+.+++   .+.....                                     
T Consensus         4 ~~p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             cccEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            357899999999998888789999999998766   2222110                                     


Q ss_pred             ---------------cCCCeeEEEEeeeCCeEEE-EecCCCCCCCCCeEEEEECC--CCCEEEEEE---ccCceeEEEEc
Q 014977           84 ---------------KSGGFRIVEMLFRCNILAL-VGAGDNSQYPPTKVIIWDDH--QSRCIGEFA---FRSDVRSVKLS  142 (415)
Q Consensus        84 ---------------~~~~~~~~~~~~~~~~~~l-~s~~~d~~~~~~~i~vwd~~--~~~~~~~~~---~~~~i~~l~~~  142 (415)
                                     ..+...+.++.|++++..| ++++.|     +.|++||+.  +++.+..+.   +...|.+++|+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s  158 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSD-----KSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIA  158 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSSEEEEEEGGG-----TEEEEEEECSSSSSCEEEEEEEECSSCEEEEEEC
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCC-----CeEEEEECcCCCCceeeeeecccCCCCceEEEEc
Confidence                           0122258899999999875 888777     999999998  888888874   67899999999


Q ss_pred             CCeEEEE---eCCeEEEEEcCCceeee----EEeccCCCcceEEEecC-CCceEEEEeCCccCeEEEEEcCC-cceEE-E
Q 014977          143 RDRIVVV---LEHKIYVYSFVDLKLLH----QIETLANLRGLCCLSHH-SSTSVLACPGLQRGQVRIEHFGL-NMIKL-I  212 (415)
Q Consensus       143 ~~~~~~~---~d~~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~l~~~g~~dg~v~i~~~~~-~~~~~-~  212 (415)
                      |++.+++   .++.|++|++.+++...    .+..|...+..++++++ ..+.+|++ |+.|+.|++|+... ..+.. +
T Consensus       159 p~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s-~~~d~~i~vwd~~~~~~~~~~~  237 (450)
T 2vdu_B          159 EDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIIT-SDRDEHIKISHYPQCFIVDKWL  237 (450)
T ss_dssp             TTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEE-EETTSCEEEEEESCTTCEEEEC
T ss_pred             CCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEE-EcCCCcEEEEECCCCceeeeee
Confidence            9998887   57999999998876554    66777765554444443 11667765 67899999998765 44555 4


Q ss_pred             ecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecC-----------------------CCcccEEEEEe
Q 014977          213 NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRG-----------------------VDRAEIYSIAL  269 (415)
Q Consensus       213 ~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~-----------------------~~~~~v~~l~~  269 (415)
                      .+|...|.+++|+ ++++|++++.|+. |++||+.+++.+..+..+                       .....|.+++|
T Consensus       238 ~~h~~~v~~~~~s-d~~~l~s~~~d~~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  315 (450)
T 2vdu_B          238 FGHKHFVSSICCG-KDYLLLSAGGDDK-IFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIK  315 (450)
T ss_dssp             CCCSSCEEEEEEC-STTEEEEEESSSE-EEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEE
T ss_pred             cCCCCceEEEEEC-CCCEEEEEeCCCe-EEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEE
Confidence            5899999999999 9999999999999 999999999998888631                       12346899999


Q ss_pred             CCCCCEEEEEe-CCCeEEEEEc
Q 014977          270 SPNVQWLAVAS-DKGTVHIFSL  290 (415)
Q Consensus       270 spdg~~l~s~s-~dg~i~vwd~  290 (415)
                      +|++++|++++ .|+.|+||++
T Consensus       316 ~~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          316 SKNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             CSSSSEEEEEETTCSEEEEEEE
T ss_pred             eCCCCEEEEEECCCCeEEEEEe
Confidence            99999999999 8999999999

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.97  E-value=7.1e-29  Score=228.69  Aligned_cols=244  Identities=14%  Similarity=0.149  Sum_probs=196.1

Q ss_pred             cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~  117 (415)
                      ...+|...|.+++|+|++++|++++ |+.|++|+...........  .+...+....+.+++..+++++.|     +.++
T Consensus        81 ~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~s~s~d-----~~~~  153 (340)
T 4aow_A           81 ALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV--GHTKDVLSVAFSSDNRQIVSGSRD-----KTIK  153 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--CCSSCEEEEEECTTSSCEEEEETT-----SCEE
T ss_pred             EEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeec--CCCCceeEEEEeecCccceeecCC-----CeEE
Confidence            3478999999999999999999999 9999999998766554433  566667778888988889998887     9999


Q ss_pred             EEECCCCCEEEEEE--ccCceeEEEEcCCe--EEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEE
Q 014977          118 IWDDHQSRCIGEFA--FRSDVRSVKLSRDR--IVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLA  190 (415)
Q Consensus       118 vwd~~~~~~~~~~~--~~~~i~~l~~~~~~--~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  190 (415)
                      +||+..........  |...+..++|++++  .+++   .|+.|++||+.+++.+..+..|...  +.++.++|++.+|+
T Consensus       154 ~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~--v~~~~~s~~~~~l~  231 (340)
T 4aow_A          154 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGY--LNTVTVSPDGSLCA  231 (340)
T ss_dssp             EECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSC--EEEEEECTTSSEEE
T ss_pred             EEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCc--EEEEEECCCCCEEE
Confidence            99987665443322  78899999998764  3333   6899999999999999999888874  45556666777887


Q ss_pred             EeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEec-------CCCccc
Q 014977          191 CPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR-------GVDRAE  263 (415)
Q Consensus       191 ~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~-------~~~~~~  263 (415)
                      + |+.|+.|++|+...........+...+.++.|+|++.++ +++.|+. |++||++++..+..+..       ..|...
T Consensus       232 s-~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~  308 (340)
T 4aow_A          232 S-GGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWL-CAATGPS-IKIWDLEGKIIVDELKQEVISTSSKAEPPQ  308 (340)
T ss_dssp             E-EETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEE-EEEETTE-EEEEETTTTEEEEEECCC-------CCCCC
T ss_pred             E-EeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCcee-eccCCCE-EEEEECCCCeEEEeccccceeeeccCCCCC
Confidence            6 678999999998765544444566789999999998755 5566899 99999998877766542       136778


Q ss_pred             EEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977          264 IYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (415)
Q Consensus       264 v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  294 (415)
                      |++++|+|||++|++|+.||.|+|||+++|+
T Consensus       309 v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          309 CTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence            9999999999999999999999999999986

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.3e-28  Score=255.01  Aligned_cols=201  Identities=10%  Similarity=0.059  Sum_probs=163.6

Q ss_pred             CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEE
Q 014977           40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII  118 (415)
Q Consensus        40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~v  118 (415)
                      ..+|...|++++|+|++++||+|+ ||.|+||+....+....  + .+...|.++.|++ +.+|++++.|     +.|++
T Consensus        13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~--~-~~~~~V~~l~fsp-g~~L~S~s~D-----~~v~l   83 (902)
T 2oaj_A           13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIK--L-EDRSAIKEMRFVK-GIYLVVINAK-----DTVYV   83 (902)
T ss_dssp             EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEE--C-SSCCCEEEEEEET-TTEEEEEETT-----CEEEE
T ss_pred             ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEE--c-CCCCCEEEEEEcC-CCEEEEEECc-----CeEEE
Confidence            357999999999999999999999 99999999876544332  3 4677899999999 6688888887     99999


Q ss_pred             EECCCCCEEEEEEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceee-----------eEEeccCCCcceEEEecCC
Q 014977          119 WDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLL-----------HQIETLANLRGLCCLSHHS  184 (415)
Q Consensus       119 wd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~-----------~~~~~~~~~~~~~~~~~~~  184 (415)
                      ||+.+++++..+.+...|++++|+|++.+++   .|+.|++||+.+++..           ..+..|..++.  +++++|
T Consensus        84 Wd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~--sl~~sp  161 (902)
T 2oaj_A           84 LSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIV--SIQWNP  161 (902)
T ss_dssp             EETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCC--EEEEET
T ss_pred             EECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeE--EEEEcc
Confidence            9999999999999889999999999999888   6999999999887753           12234555444  445555


Q ss_pred             Cc-eEEEEeCCccCeEEEEEcCCc-ceEEEecC------------------ccceEEEEeCCCCCEEEEEeCCCcEEEEE
Q 014977          185 ST-SVLACPGLQRGQVRIEHFGLN-MIKLINAH------------------DSHIACFTLTLDGLLLATASTRGTLIRIF  244 (415)
Q Consensus       185 ~~-~~l~~~g~~dg~v~i~~~~~~-~~~~~~~~------------------~~~i~~l~~sp~g~~l~s~s~dg~~I~vw  244 (415)
                      ++ ..++ +|+.|+.| +|+.... .+..+..|                  ...|.+++|+|+|++|++++.|+. |++|
T Consensus       162 ~~~~~l~-~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~-i~lW  238 (902)
T 2oaj_A          162 RDIGTVL-ISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNS-LVFW  238 (902)
T ss_dssp             TEEEEEE-EECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCC-EEEE
T ss_pred             CCCCEEE-EEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCe-EEEE
Confidence            43 3454 47799999 9997754 45555544                  477999999999999999999999 9999


Q ss_pred             ECCCCcEEEE
Q 014977          245 NTVDGTRLQE  254 (415)
Q Consensus       245 d~~~~~~~~~  254 (415)
                      |+++++++..
T Consensus       239 d~~~g~~~~~  248 (902)
T 2oaj_A          239 DANSGHMIMA  248 (902)
T ss_dssp             ETTTCCEEEE
T ss_pred             ECCCCcEEEE
Confidence            9999987653

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=8.9e-29  Score=256.20  Aligned_cols=296  Identities=13%  Similarity=0.154  Sum_probs=206.6

Q ss_pred             CCCCCCceEEEEEeCC-CCEEEEEe-CCcEEEEEccCCceeEEEecc----------------CCCeeEEEEeeeCCeEE
Q 014977           40 SDVDEIELISVSWNQD-YGCFAAGT-SCGFRIYNCEPFKETFRRDLK----------------SGGFRIVEMLFRCNILA  101 (415)
Q Consensus        40 ~~~h~~~V~~l~~sp~-g~~la~g~-d~~v~iw~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~  101 (415)
                      ..+|.+.|.+++|+|+ +..|++|+ |+.| |||+.+.+.......+                .|...+.++.|+|++..
T Consensus       147 ~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~  225 (902)
T 2oaj_A          147 PAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLH  225 (902)
T ss_dssp             SSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSE
T ss_pred             cccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCE
Confidence            4679999999999996 47888888 9999 9999986554433221                12367999999999999


Q ss_pred             EEecCCCCCCCCCeEEEEECCCCCEEEEEE------c-------------cCceeEEEEc----CCe-EEEE---eC---
Q 014977          102 LVGAGDNSQYPPTKVIIWDDHQSRCIGEFA------F-------------RSDVRSVKLS----RDR-IVVV---LE---  151 (415)
Q Consensus       102 l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~------~-------------~~~i~~l~~~----~~~-~~~~---~d---  151 (415)
                      +++++.|     +.|++||+++++++....      |             ...|.+++|+    |++ .+++   .+   
T Consensus       226 lasgs~D-----g~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~  300 (902)
T 2oaj_A          226 IITIHED-----NSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRG  300 (902)
T ss_dssp             EEEEETT-----CCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTS
T ss_pred             EEEEECC-----CeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCC
Confidence            9999988     999999999998876421      2             3368899984    443 3333   11   


Q ss_pred             --CeEEEEEc----------------------------------------------------------------------
Q 014977          152 --HKIYVYSF----------------------------------------------------------------------  159 (415)
Q Consensus       152 --~~i~iwd~----------------------------------------------------------------------  159 (415)
                        ..+.+|++                                                                      
T Consensus       301 ~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~  380 (902)
T 2oaj_A          301 DNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETML  380 (902)
T ss_dssp             SCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEE
T ss_pred             CCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEE
Confidence              25556552                                                                      


Q ss_pred             -CCceeeeE-------EeccCCCcceEE--------------------------------EecCCCceEEEEeCCccCeE
Q 014977          160 -VDLKLLHQ-------IETLANLRGLCC--------------------------------LSHHSSTSVLACPGLQRGQV  199 (415)
Q Consensus       160 -~~~~~~~~-------~~~~~~~~~~~~--------------------------------~~~~~~~~~l~~~g~~dg~v  199 (415)
                       .++.....       +..+...+..++                                +++++++.+|++ |+.|++|
T Consensus       381 ~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laS-gs~DgtV  459 (902)
T 2oaj_A          381 YPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFIT-GHSNGSV  459 (902)
T ss_dssp             TTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEE-EETTSEE
T ss_pred             CCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEE-ecCCCcE
Confidence             22211000       000001111111                                233567777775 7799999


Q ss_pred             EEEEcCCcceE---EEe---------cCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCc-----------------
Q 014977          200 RIEHFGLNMIK---LIN---------AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT-----------------  250 (415)
Q Consensus       200 ~i~~~~~~~~~---~~~---------~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~-----------------  250 (415)
                      ++|+.....+.   .+.         +|...|.+++|+|+|++||+|+.||. |+|||+.+++                 
T Consensus       460 rlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~Dgt-V~lwd~~~~~~~~~~~~~~~~~~~~~~  538 (902)
T 2oaj_A          460 RIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGD-VVLFKYEVNQFYSVENRPESGDLEMNF  538 (902)
T ss_dssp             EEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSC-EEEEEEEECCC---------------C
T ss_pred             EEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcE-EEEEEecCccccCccccCCCcccceee
Confidence            99998754321   121         78899999999999999999999999 9999997662                 


Q ss_pred             ----------------------------EEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCC
Q 014977          251 ----------------------------RLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSS  302 (415)
Q Consensus       251 ----------------------------~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~  302 (415)
                                                  ++..+.+  |.+.|++++|+||| +||+|+.|++|+|||++++.....    
T Consensus       539 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~--h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~----  611 (902)
T 2oaj_A          539 RRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHA--NKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYM----  611 (902)
T ss_dssp             CSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECC--CSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEE----
T ss_pred             eeccccCCccccccccccCCCCCCCccceeEEEEc--CCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEE----
Confidence                                        3556666  88899999999999 999999999999999876542100    


Q ss_pred             CCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEec-----CC----CEE
Q 014977          303 LSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFG-----SQ----NTV  373 (415)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~----~~i  373 (415)
                                                          . .+..+ .        .-+...+..++|+     ++    ..|
T Consensus       612 ------------------------------------~-~~~~~-~--------~gh~~~V~sv~Fs~~~~~~Dg~~~~~l  645 (902)
T 2oaj_A          612 ------------------------------------E-NIREI-S--------GAQSACVTCIEFVIMEYGDDGYSSILM  645 (902)
T ss_dssp             ------------------------------------E-EGGGT-C--------SSCCCCEEEEEEEEEECTTSSSEEEEE
T ss_pred             ------------------------------------e-ehhHh-c--------cccccceEEEEEEEEecCCCCCcceEE
Confidence                                                0 00000 0        0112346678888     87    478


Q ss_pred             EEEEeCCcEEEEEEecCCCCcEE
Q 014977          374 VIVSMDGSFYRCSFDPVHGGEML  396 (415)
Q Consensus       374 ~~~~~dg~~~~~~~~~~~~~~~~  396 (415)
                      ++++.||+|++|++.+.+.|++.
T Consensus       646 ~sgs~D~tv~~wd~~p~~~g~~~  668 (902)
T 2oaj_A          646 VCGTDMGEVITYKILPASGGKFD  668 (902)
T ss_dssp             EEEETTSEEEEEEEEECGGGCEE
T ss_pred             EEEecCCcEEEEEEecCCCCcEE
Confidence            88888999999999776555554

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.97  E-value=3.5e-29  Score=235.22  Aligned_cols=238  Identities=11%  Similarity=0.060  Sum_probs=189.6

Q ss_pred             CCCCCceEEEEEeC-CCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEE
Q 014977           41 DVDEIELISVSWNQ-DYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII  118 (415)
Q Consensus        41 ~~h~~~V~~l~~sp-~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~v  118 (415)
                      .+|...|.+++|+| ++.+|++++ |+.|++||+.............+...+.++.|++++..+++++.|     +.|++
T Consensus       115 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i  189 (383)
T 3ei3_B          115 MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDST-----GRLLL  189 (383)
T ss_dssp             CSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETT-----SEEEE
T ss_pred             CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCC-----CCEEE
Confidence            47999999999999 789999999 999999999863322222223345779999999999999999988     99999


Q ss_pred             EECCCCCEEEEEE-ccCceeEEEEcCCeE-EEE---eCCeEEEEEcCC----ceeeeEEeccCCCcceEEEecCC-CceE
Q 014977          119 WDDHQSRCIGEFA-FRSDVRSVKLSRDRI-VVV---LEHKIYVYSFVD----LKLLHQIETLANLRGLCCLSHHS-STSV  188 (415)
Q Consensus       119 wd~~~~~~~~~~~-~~~~i~~l~~~~~~~-~~~---~d~~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~  188 (415)
                      ||+ +++.+..+. |...|.+++|+|++. +++   .|+.|++||+.+    ++.+..+ .|..  .+.++.+++ ++.+
T Consensus       190 ~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~--~v~~~~~s~~~~~~  265 (383)
T 3ei3_B          190 LGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEK--PVNAAYFNPTDSTK  265 (383)
T ss_dssp             EET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSS--CEEEEEECTTTSCE
T ss_pred             EEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCC--ceEEEEEcCCCCCE
Confidence            998 677787777 899999999999987 555   699999999987    5566555 4555  556666677 7777


Q ss_pred             EEEeCCccCeEEEEEcCC-cceEEEecCc-----------------cceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCc
Q 014977          189 LACPGLQRGQVRIEHFGL-NMIKLINAHD-----------------SHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT  250 (415)
Q Consensus       189 l~~~g~~dg~v~i~~~~~-~~~~~~~~~~-----------------~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~  250 (415)
                      |++ ++.|+.|++|+... .....+..|.                 ..+..++|+|+|++  +++.|+. |++||+.+++
T Consensus       266 l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~-i~iwd~~~~~  341 (383)
T 3ei3_B          266 LLT-TDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRT-IDIYDANSGG  341 (383)
T ss_dssp             EEE-EESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCC-EEEEETTTCC
T ss_pred             EEE-EcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCe-EEEEecCCCc
Confidence            776 66899999998764 3445555442                 23444666777766  7778999 9999999999


Q ss_pred             EEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEcee
Q 014977          251 RLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV  292 (415)
Q Consensus       251 ~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~  292 (415)
                      .+..+..+.+...+..++|+|++++|++++ ||.|+|||+++
T Consensus       342 ~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          342 LVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             EEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             eeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence            999998765667788889999999999997 99999999975

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.97  E-value=3.7e-28  Score=250.28  Aligned_cols=244  Identities=13%  Similarity=0.134  Sum_probs=207.6

Q ss_pred             cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~  117 (415)
                      ...+|...|.+++|+|++++|++|+ |+.|+||++.+.+.....  ..|...+.++.|++++..+++++.|     +.|+
T Consensus        50 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~  122 (814)
T 3mkq_A           50 SIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF--EAHPDYIRSIAVHPTKPYVLSGSDD-----LTVK  122 (814)
T ss_dssp             EEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE--ECCSSCEEEEEECSSSSEEEEEETT-----SEEE
T ss_pred             EEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE--ecCCCCEEEEEEeCCCCEEEEEcCC-----CEEE
Confidence            4457999999999999999999999 999999999987665543  4788889999999999989998887     9999


Q ss_pred             EEECCCC-CEEEEEE-ccCceeEEEEcC-CeEEEE---eCCeEEEEEcCCceeeeEEeccC-CCcceEEEecCCCceEEE
Q 014977          118 IWDDHQS-RCIGEFA-FRSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDLKLLHQIETLA-NLRGLCCLSHHSSTSVLA  190 (415)
Q Consensus       118 vwd~~~~-~~~~~~~-~~~~i~~l~~~~-~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~  190 (415)
                      +||+.++ .....+. |...|.+++|+| ++..++   .|+.|++||+.+++....+..+. ..+..+++++.+++.+++
T Consensus       123 vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~  202 (814)
T 3mkq_A          123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI  202 (814)
T ss_dssp             EEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEE
T ss_pred             EEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEE
Confidence            9999887 5556666 889999999999 777776   68999999998888877776554 666777777766888887


Q ss_pred             EeCCccCeEEEEEcC-CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEe
Q 014977          191 CPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIAL  269 (415)
Q Consensus       191 ~~g~~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~  269 (415)
                      + ++.||.|++|+.. ++.+..+.+|...|.+++|+|+|.+|++++.||. |++||+.+++.+..+..  +...+.+++|
T Consensus       203 ~-~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-v~vwd~~~~~~~~~~~~--~~~~v~~~~~  278 (814)
T 3mkq_A          203 T-ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGT-LKIWNSSTYKVEKTLNV--GLERSWCIAT  278 (814)
T ss_dssp             E-ECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSC-EEEEETTTCSEEEEECC--SSSSEEEEEE
T ss_pred             E-EeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCe-EEEEECCCCcEEEEeec--CCCcEEEEEE
Confidence            6 6789999999865 4567778899999999999999999999999999 99999999999999887  6779999999


Q ss_pred             CCCCC--EEEEEeCCCeEEEEEceecc
Q 014977          270 SPNVQ--WLAVASDKGTVHIFSLRVRV  294 (415)
Q Consensus       270 spdg~--~l~s~s~dg~i~vwd~~~~~  294 (415)
                      +|++.  ++++++ ++.+.+|++..+.
T Consensus       279 ~~~~~~~~~~~~~-~~~~~~~~~~~~~  304 (814)
T 3mkq_A          279 HPTGRKNYIASGF-DNGFTVLSLGNDE  304 (814)
T ss_dssp             CTTCGGGEEEEEE-TTEEEEEECSCCS
T ss_pred             ccCCCceEEEEEe-CCCEEEEEcCCCC
Confidence            99987  455554 6669999987654

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.97  E-value=4.2e-28  Score=232.65  Aligned_cols=276  Identities=14%  Similarity=0.210  Sum_probs=219.4

Q ss_pred             ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (415)
Q Consensus        38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i  116 (415)
                      ....+|.+.|.. ++++++++|++|+ |+.|++||+.+.+...  .+..|...+.++.++++  .+++++.|     +.|
T Consensus       112 ~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~--~~~~h~~~v~~~~~~~~--~l~s~~~d-----g~i  181 (445)
T 2ovr_B          112 KVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR--TLVGHTGGVWSSQMRDN--IIISGSTD-----RTL  181 (445)
T ss_dssp             EEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE--ECCCCSSCEEEEEEETT--EEEEEETT-----SCE
T ss_pred             EEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEE--EEcCCCCCEEEEEecCC--EEEEEeCC-----CeE
Confidence            346789887643 3555789999999 9999999999866544  35578888999999854  66677776     999


Q ss_pred             EEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCC
Q 014977          117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL  194 (415)
Q Consensus       117 ~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  194 (415)
                      ++||+.+++.+..+. |...|.++.++++....+ .|+.|++||+.+++.+..+..|...+  .++.++  +.++++ |+
T Consensus       182 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v--~~~~~~--~~~l~~-~~  256 (445)
T 2ovr_B          182 KVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAV--RCVQYD--GRRVVS-GA  256 (445)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCE--EEEEEC--SSCEEE-EE
T ss_pred             EEEECCcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccE--EEEEEC--CCEEEE-Ec
Confidence            999999999998888 899999999987664444 79999999999999999998887744  445553  445655 66


Q ss_pred             ccCeEEEEEcC-CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCC
Q 014977          195 QRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNV  273 (415)
Q Consensus       195 ~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg  273 (415)
                      .||.|++|+.. .+.+..+.+|...|.+++|  ++.+|++++.|+. |++||+++++.+..+..  |...+.++.+  ++
T Consensus       257 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~--~~~~v~~~~~--~~  329 (445)
T 2ovr_B          257 YDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTS-IRVWDVETGNCIHTLTG--HQSLTSGMEL--KD  329 (445)
T ss_dssp             TTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSC-EEEEETTTCCEEEEECC--CCSCEEEEEE--ET
T ss_pred             CCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCe-EEEEECCCCCEEEEEcC--CcccEEEEEE--eC
Confidence            89999998865 4667788899999999999  8899999999999 99999999999999887  7778888887  46


Q ss_pred             CEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceE
Q 014977          274 QWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFA  353 (415)
Q Consensus       274 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (415)
                      .+|++++.||.|++||+++++.......+                                                   
T Consensus       330 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---------------------------------------------------  358 (445)
T 2ovr_B          330 NILVSGNADSTVKIWDIKTGQCLQTLQGP---------------------------------------------------  358 (445)
T ss_dssp             TEEEEEETTSCEEEEETTTCCEEEEECST---------------------------------------------------
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEEccC---------------------------------------------------
Confidence            79999999999999999887643211100                                                   


Q ss_pred             EEEeCCCceEEEEecCCCEEEEEEeCCcEEEEEEec
Q 014977          354 QFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~i~~~~~dg~~~~~~~~~  389 (415)
                        ......+..++|.+ +.+++++.||.|++|++..
T Consensus       359 --~~~~~~v~~~~~~~-~~l~s~~~dg~v~iwd~~~  391 (445)
T 2ovr_B          359 --NKHQSAVTCLQFNK-NFVITSSDDGTVKLWDLKT  391 (445)
T ss_dssp             --TSCSSCEEEEEECS-SEEEEEETTSEEEEEETTT
T ss_pred             --CCCCCCEEEEEECC-CEEEEEeCCCeEEEEECCC
Confidence              00113455567753 7889999999999998864

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.2e-28  Score=227.56  Aligned_cols=248  Identities=9%  Similarity=0.096  Sum_probs=204.8

Q ss_pred             cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~  117 (415)
                      ...+|...|.+++|+|++++|++++ |+.|++||+.+.+.....   .+...+.++.|++++..++++..+....++.|.
T Consensus        69 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~  145 (369)
T 3zwl_B           69 TLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATW---KSPVPVKRVEFSPCGNYFLAILDNVMKNPGSIN  145 (369)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE---ECSSCEEEEEECTTSSEEEEEECCBTTBCCEEE
T ss_pred             hhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe---ecCCCeEEEEEccCCCEEEEecCCccCCCCEEE
Confidence            4567999999999999999999999 999999999987655543   366778999999999888877653222348999


Q ss_pred             EEECCCCCE-----------EEEEE-ccC--ceeEEEEcCCeEEEE---eCCeEEEEEcCC-ceeeeEEeccCCCcceEE
Q 014977          118 IWDDHQSRC-----------IGEFA-FRS--DVRSVKLSRDRIVVV---LEHKIYVYSFVD-LKLLHQIETLANLRGLCC  179 (415)
Q Consensus       118 vwd~~~~~~-----------~~~~~-~~~--~i~~l~~~~~~~~~~---~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~  179 (415)
                      +||+..+..           +..+. +..  .+.+++|+|++..++   .|+.|++||+.+ ++.+..+..+..  .+.+
T Consensus       146 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~v~~  223 (369)
T 3zwl_B          146 IYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEK--SISD  223 (369)
T ss_dssp             EEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSS--CEEE
T ss_pred             EEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCC--ceeE
Confidence            999876532           22222 344  899999999998877   689999999988 788888888776  4555


Q ss_pred             EecCCCceEEEEeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCC--------------cEEEEEE
Q 014977          180 LSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRG--------------TLIRIFN  245 (415)
Q Consensus       180 ~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg--------------~~I~vwd  245 (415)
                      +.+++++.+|++ ++.|+.|++|+...........+...+..++|+|+++++++++.++              . +++||
T Consensus       224 ~~~~~~~~~l~~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-i~~~d  301 (369)
T 3zwl_B          224 MQFSPDLTYFIT-SSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFE-ARFYH  301 (369)
T ss_dssp             EEECTTSSEEEE-EETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CE-EEEEE
T ss_pred             EEECCCCCEEEE-ecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcce-eEEEe
Confidence            666667778776 6689999999987655444444889999999999999999999988              7 99999


Q ss_pred             CCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceeccc
Q 014977          246 TVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV  295 (415)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~  295 (415)
                      +.+++.+..+..  |...|.+++|+|++++|++++.||.|++|+++++..
T Consensus       302 ~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~  349 (369)
T 3zwl_B          302 KIFEEEIGRVQG--HFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYF  349 (369)
T ss_dssp             TTTCCEEEEEEC--CSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHH
T ss_pred             cCCCcchhheec--ccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccc
Confidence            999999999988  788999999999999999999999999999998764

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.97  E-value=1.2e-28  Score=265.24  Aligned_cols=281  Identities=14%  Similarity=0.133  Sum_probs=224.9

Q ss_pred             cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC--CeEEEEecCCCCCCCCCe
Q 014977           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC--NILALVGAGDNSQYPPTK  115 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~d~~~~~~~  115 (415)
                      ...+|...|.+++|+|++++|++++ |+.|+|||+.+.+....  +..|...+.++.|++  +..++++++.|     +.
T Consensus       652 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~sg~~d-----~~  724 (1249)
T 3sfz_A          652 DIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHT--YDEHSEQVNCCHFTNKSNHLLLATGSND-----FF  724 (1249)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE--EECCSSCEEEEEECSSSSCCEEEEEETT-----SC
T ss_pred             EeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEE--EcCCCCcEEEEEEecCCCceEEEEEeCC-----Ce
Confidence            3468999999999999999999999 99999999998765544  447888899999998  66788888887     99


Q ss_pred             EEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEe----------------------
Q 014977          116 VIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIE----------------------  169 (415)
Q Consensus       116 i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~----------------------  169 (415)
                      |++||+.+++++..+. |...|.+++|+|++..++   .|+.|++||+.+++....+.                      
T Consensus       725 v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  804 (1249)
T 3sfz_A          725 LKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCC  804 (1249)
T ss_dssp             EEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCC
T ss_pred             EEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEE
Confidence            9999999999998887 899999999999998877   68999999997766544432                      


Q ss_pred             ---------------------------------ccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC-cceEEEecC
Q 014977          170 ---------------------------------TLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINAH  215 (415)
Q Consensus       170 ---------------------------------~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~-~~~~~~~~~  215 (415)
                                                       .|..  .+.++.+++++.++++ ++.++.|++|+... ..+..+.+|
T Consensus       805 ~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~--~v~~~~~sp~~~~l~~-~~~dg~v~vwd~~~~~~~~~~~~h  881 (1249)
T 3sfz_A          805 SWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHS--TIQYCDFSPYDHLAVI-ALSQYCVELWNIDSRLKVADCRGH  881 (1249)
T ss_dssp             CBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSS--CCCEEEECSSTTEEEE-ECSSSCEEEEETTTTEEEEEECCC
T ss_pred             EECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCC--ceEEEEEcCCCCEEEE-EeCCCeEEEEEcCCCceeeecCCC
Confidence                                             2222  3344555666777776 66899999998764 456677889


Q ss_pred             ccceEEEEeCCCCCEEEEEeCCCcEEEEEECC------------------------------------------------
Q 014977          216 DSHIACFTLTLDGLLLATASTRGTLIRIFNTV------------------------------------------------  247 (415)
Q Consensus       216 ~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~------------------------------------------------  247 (415)
                      ...|.+++|+|+|++|++++.|+. |++||+.                                                
T Consensus       882 ~~~v~~v~~spdg~~l~s~s~dg~-v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  960 (1249)
T 3sfz_A          882 LSWVHGVMFSPDGSSFLTASDDQT-IRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLP  960 (1249)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSC-EEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEEC
T ss_pred             ccceEEEEECCCCCEEEEEeCCCe-EEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcc
Confidence            999999999999999999998888 8888743                                                


Q ss_pred             -------------------------------CCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977          248 -------------------------------DGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       248 -------------------------------~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                                                     +++.+..+.+  |...|.+++|+|+|++|++++.||.|++||+.+++..
T Consensus       961 ~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~--h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~ 1038 (1249)
T 3sfz_A          961 EAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVG--HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV 1038 (1249)
T ss_dssp             CSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCC--CSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEE
T ss_pred             cCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeeccc--CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceE
Confidence                                           2223333333  6778999999999999999999999999999887643


Q ss_pred             CCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCCCEEEEE
Q 014977          297 EDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIV  376 (415)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  376 (415)
                      ..                                                         .........+.|++++.++++
T Consensus      1039 ~~---------------------------------------------------------~~~~~~v~~~~~~~~~~l~~~ 1061 (1249)
T 3sfz_A         1039 FL---------------------------------------------------------QAHQETVKDFRLLQDSRLLSW 1061 (1249)
T ss_dssp             CC---------------------------------------------------------BCCSSCEEEEEECSSSEEEEE
T ss_pred             EE---------------------------------------------------------ecCCCcEEEEEEcCCCcEEEE
Confidence            10                                                         001234556788999999999


Q ss_pred             EeCCcEEEEEEec
Q 014977          377 SMDGSFYRCSFDP  389 (415)
Q Consensus       377 ~~dg~~~~~~~~~  389 (415)
                      +.||.+++|++..
T Consensus      1062 ~~dg~v~vwd~~~ 1074 (1249)
T 3sfz_A         1062 SFDGTVKVWNVIT 1074 (1249)
T ss_dssp             ESSSEEEEEETTT
T ss_pred             ECCCcEEEEECCC
Confidence            9999999998864

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.97  E-value=3.1e-29  Score=234.08  Aligned_cols=247  Identities=10%  Similarity=0.048  Sum_probs=202.2

Q ss_pred             cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~  117 (415)
                      ...+|...|.+++|+|++++|++++ |+.|++|++++.+......+..+...+.++.|++++..+++++.+     +.|+
T Consensus        47 ~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~v~  121 (372)
T 1k8k_C           47 ELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGS-----RVIS  121 (372)
T ss_dssp             EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETT-----SSEE
T ss_pred             eecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCC-----CEEE
Confidence            3467999999999999999999999 999999999886655555555788889999999999999998887     9999


Q ss_pred             EEECCCCCE---EEEEE--ccCceeEEEEcCCeEEEE---eCCeEEEEEc------------------CCceeeeEEecc
Q 014977          118 IWDDHQSRC---IGEFA--FRSDVRSVKLSRDRIVVV---LEHKIYVYSF------------------VDLKLLHQIETL  171 (415)
Q Consensus       118 vwd~~~~~~---~~~~~--~~~~i~~l~~~~~~~~~~---~d~~i~iwd~------------------~~~~~~~~~~~~  171 (415)
                      +||+..++.   ...+.  |...|.+++|+|++.+++   .|+.|++||+                  ..++.+..+..|
T Consensus       122 i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (372)
T 1k8k_C          122 ICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS  201 (372)
T ss_dssp             EEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC
T ss_pred             EEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCC
Confidence            999988763   33333  688999999999998777   5899999995                  356777777777


Q ss_pred             CCCcceEEEecCCCceEEEEeCCccCeEEEEEcC-CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCC--
Q 014977          172 ANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVD--  248 (415)
Q Consensus       172 ~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~--  248 (415)
                      ..  .+.++.+++++.+|++ ++.|+.|++|+.. .+.+..+..|...|.+++|+|++++|+++ .|+. |++||+.+  
T Consensus       202 ~~--~v~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~-i~i~~~~~~~  276 (372)
T 1k8k_C          202 CG--WVHGVCFSANGSRVAW-VSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCF-PVLFTYDSAA  276 (372)
T ss_dssp             SS--CEEEEEECSSSSEEEE-EETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSS-CEEEEEETTT
T ss_pred             CC--eEEEEEECCCCCEEEE-EeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCe-EEEEEccCcC
Confidence            66  4555666667777776 6689999999875 56778889999999999999999988887 8999 99999987  


Q ss_pred             CcEE--------------------------------------EEEecCCCcccEEEEEeC-CCC---CEEEEEeCCCeEE
Q 014977          249 GTRL--------------------------------------QEVRRGVDRAEIYSIALS-PNV---QWLAVASDKGTVH  286 (415)
Q Consensus       249 ~~~~--------------------------------------~~~~~~~~~~~v~~l~~s-pdg---~~l~s~s~dg~i~  286 (415)
                      ++..                                      ..+.. .|...|++++|. ++|   .+|++++.||.|+
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~  355 (372)
T 1k8k_C          277 GKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDS-LHKNSVSQISVLSGGKAKCSQFCTTGMDGGMS  355 (372)
T ss_dssp             TEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSS-SSSSCEEEEEEEESTTTSCSEEEEEETTSEEE
T ss_pred             ceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccc-cccCCcceeEEecCCCcceeeEEEecCCCceE
Confidence            4210                                      12221 278899999966 677   9999999999999


Q ss_pred             EEEceecccC
Q 014977          287 IFSLRVRVVG  296 (415)
Q Consensus       287 vwd~~~~~~~  296 (415)
                      +|++++++..
T Consensus       356 ~W~~~~~~~~  365 (372)
T 1k8k_C          356 IWDVRSLESA  365 (372)
T ss_dssp             EEEHHHHHHH
T ss_pred             EEEecChhHh
Confidence            9999987653

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.97  E-value=5.6e-29  Score=252.06  Aligned_cols=242  Identities=14%  Similarity=0.153  Sum_probs=194.3

Q ss_pred             cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~  117 (415)
                      ...+|...|.+++|+|++++|++|+ |+.|+|||+.+......  +..|...+.++.|++++..+++++.|     +.|+
T Consensus       425 ~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~--~~~h~~~v~~~~~s~~~~~l~s~s~D-----~~i~  497 (694)
T 3dm0_A          425 RLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRR--FVGHTKDVLSVAFSLDNRQIVSASRD-----RTIK  497 (694)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE--EECCSSCEEEEEECTTSSCEEEEETT-----SCEE
T ss_pred             eecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeE--EeCCCCCEEEEEEeCCCCEEEEEeCC-----CEEE
Confidence            3568999999999999999999999 99999999988655443  44888899999999999999999988     9999


Q ss_pred             EEECCCCCEEEEE----EccCceeEEEEcCCe--EEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceE
Q 014977          118 IWDDHQSRCIGEF----AFRSDVRSVKLSRDR--IVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSV  188 (415)
Q Consensus       118 vwd~~~~~~~~~~----~~~~~i~~l~~~~~~--~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (415)
                      +||+.........    .|...|.+++|+|++  ..++   .|+.|++||+.+++....+..|..  .+.++.+++++.+
T Consensus       498 iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~--~v~~v~~spdg~~  575 (694)
T 3dm0_A          498 LWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTG--YVSTVAVSPDGSL  575 (694)
T ss_dssp             EECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSE
T ss_pred             EEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCC--CEEEEEEeCCCCE
Confidence            9997654333222    167789999999986  3344   699999999999999989988887  4555666667778


Q ss_pred             EEEeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCC---------
Q 014977          189 LACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGV---------  259 (415)
Q Consensus       189 l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~---------  259 (415)
                      |++ |+.||.|++|+...........+...|.+++|+|++.+|++++ ++. |+|||+++++.+..+....         
T Consensus       576 l~s-g~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~  652 (694)
T 3dm0_A          576 CAS-GGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAAT-EHG-IKIWDLESKSIVEDLKVDLKAEAEKADN  652 (694)
T ss_dssp             EEE-EETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEE-TTE-EEEEETTTTEEEEEECCCCC--------
T ss_pred             EEE-EeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEc-CCC-EEEEECCCCCChhhhccccccccccccc
Confidence            876 6789999999986544333234567899999999999887765 566 9999999998887765321         


Q ss_pred             --------CcccEEEEEeCCCCCEEEEEeCCCeEEEEEcee
Q 014977          260 --------DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV  292 (415)
Q Consensus       260 --------~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~  292 (415)
                              +...+++++|+|+|++|++|+.||+|+||++..
T Consensus       653 ~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~  693 (694)
T 3dm0_A          653 SGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR  693 (694)
T ss_dssp             --------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             cccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence                    011378999999999999999999999999863

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.97  E-value=1.1e-27  Score=229.60  Aligned_cols=237  Identities=16%  Similarity=0.249  Sum_probs=194.8

Q ss_pred             ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (415)
Q Consensus        38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i  116 (415)
                      ....+|...|.+++|+  +.+|++|+ |+.|++||+++.+....  +..|...+.++.++++.  +++++.|     +.|
T Consensus       153 ~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~--l~s~s~d-----g~i  221 (445)
T 2ovr_B          153 RTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHT--LYGHTSTVRCMHLHEKR--VVSGSRD-----ATL  221 (445)
T ss_dssp             EECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEE--ECCCSSCEEEEEEETTE--EEEEETT-----SEE
T ss_pred             EEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEE--ECCCCCcEEEEEecCCE--EEEEeCC-----CEE
Confidence            3456899999999998  56999999 99999999998665443  44788888899887654  6666666     999


Q ss_pred             EEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCC
Q 014977          117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL  194 (415)
Q Consensus       117 ~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  194 (415)
                      ++||+.+++.+..+. |...|.++.+..+....+ .|+.|++||+.+++.+..+..|...  +.++.+  ++.++++ |+
T Consensus       222 ~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--v~~~~~--~~~~l~~-~~  296 (445)
T 2ovr_B          222 RVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNR--VYSLQF--DGIHVVS-GS  296 (445)
T ss_dssp             EEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSC--EEEEEE--CSSEEEE-EE
T ss_pred             EEEECCCCcEEEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCc--eEEEEE--CCCEEEE-Ee
Confidence            999999999998887 899999999943332222 6999999999999999999888774  455555  3456665 66


Q ss_pred             ccCeEEEEEcC-CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecC-CCcccEEEEEeCCC
Q 014977          195 QRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRG-VDRAEIYSIALSPN  272 (415)
Q Consensus       195 ~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~-~~~~~v~~l~~spd  272 (415)
                      .|+.|++|+.. ++.+..+.+|...+.++.+  ++.+|++++.||. |++||+++++.+..+... .|...|.+++|+  
T Consensus       297 ~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--  371 (445)
T 2ovr_B          297 LDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADST-VKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--  371 (445)
T ss_dssp             TTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSC-EEEEETTTCCEEEEECSTTSCSSCEEEEEEC--
T ss_pred             CCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCe-EEEEECCCCcEEEEEccCCCCCCCEEEEEEC--
Confidence            89999999875 5667788899999998887  4679999999999 999999999999888753 266789999995  


Q ss_pred             CCEEEEEeCCCeEEEEEceeccc
Q 014977          273 VQWLAVASDKGTVHIFSLRVRVV  295 (415)
Q Consensus       273 g~~l~s~s~dg~i~vwd~~~~~~  295 (415)
                      +++|++++.||.|++||+.+++.
T Consensus       372 ~~~l~s~~~dg~v~iwd~~~~~~  394 (445)
T 2ovr_B          372 KNFVITSSDDGTVKLWDLKTGEF  394 (445)
T ss_dssp             SSEEEEEETTSEEEEEETTTCCE
T ss_pred             CCEEEEEeCCCeEEEEECCCCce
Confidence            58999999999999999998874

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=8.7e-30  Score=259.85  Aligned_cols=248  Identities=14%  Similarity=0.133  Sum_probs=198.7

Q ss_pred             cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCC--eEEEEecCCCCCCCCCe
Q 014977           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCN--ILALVGAGDNSQYPPTK  115 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~s~~~d~~~~~~~  115 (415)
                      ...+|.+.|++++|+|++++|++|+ ||.|+||++..........+..|...|.++.|+++  +..+++++.|     |.
T Consensus         4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~D-----g~   78 (753)
T 3jro_A            4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD-----GK   78 (753)
T ss_dssp             ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETT-----SC
T ss_pred             ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCC-----Ce
Confidence            4678999999999999999999999 99999999985444444556688899999999987  8899999988     99


Q ss_pred             EEEEECCCCC--EEEEEE-ccCceeEEEEcCC--eEEEE---eCCeEEEEEcCCcee--eeEEeccCCCcceEEEecCC-
Q 014977          116 VIIWDDHQSR--CIGEFA-FRSDVRSVKLSRD--RIVVV---LEHKIYVYSFVDLKL--LHQIETLANLRGLCCLSHHS-  184 (415)
Q Consensus       116 i~vwd~~~~~--~~~~~~-~~~~i~~l~~~~~--~~~~~---~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~-  184 (415)
                      |++||+.+++  .+..+. |...|.+++|+|+  +..++   .|+.|++||+.++..  ...+..|..  .+.++.++| 
T Consensus        79 I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~--~v~~l~~~p~  156 (753)
T 3jro_A           79 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI--GVNSASWAPA  156 (753)
T ss_dssp             EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSS--CEEEEEECCC
T ss_pred             EEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCC--ceEEEEecCc
Confidence            9999999886  455555 8899999999998  77766   689999999987733  334455655  455555555 


Q ss_pred             ------------CceEEEEeCCccCeEEEEEcCC-----cceEEEecCccceEEEEeCCC---CCEEEEEeCCCcEEEEE
Q 014977          185 ------------STSVLACPGLQRGQVRIEHFGL-----NMIKLINAHDSHIACFTLTLD---GLLLATASTRGTLIRIF  244 (415)
Q Consensus       185 ------------~~~~l~~~g~~dg~v~i~~~~~-----~~~~~~~~~~~~i~~l~~sp~---g~~l~s~s~dg~~I~vw  244 (415)
                                  ++.++++ |+.||.|++|+...     .....+.+|...|.+++|+|+   +.+|++++.||. |++|
T Consensus       157 ~~~~~~~~~~~~d~~~l~s-gs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~-I~iw  234 (753)
T 3jro_A          157 TIEEDGEHNGTKESRKFVT-GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT-CIIW  234 (753)
T ss_dssp             C---------CGGGCCEEE-EETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSC-EEEE
T ss_pred             ccccccccccCCCCCEEEE-EECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCE-EEEe
Confidence                        4666665 66899999998764     345667889999999999999   899999999999 9999


Q ss_pred             ECCCCcEE---EEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceeccc
Q 014977          245 NTVDGTRL---QEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV  295 (415)
Q Consensus       245 d~~~~~~~---~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~  295 (415)
                      |+.+++..   .......|...|++++|+|+|++|++++.||.|++|++..+.+
T Consensus       235 d~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~~  288 (753)
T 3jro_A          235 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK  288 (753)
T ss_dssp             EESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSSC
T ss_pred             cCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCCC
Confidence            99887421   1112222677899999999999999999999999999997554

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=5.8e-29  Score=237.60  Aligned_cols=246  Identities=15%  Similarity=0.200  Sum_probs=198.7

Q ss_pred             cCCCCCCceEEEEEeCC-CCEEEEEe-CCcEEEEEccC----------CceeEEEeccCCCeeEEEEeeeCCeE-EEEec
Q 014977           39 FSDVDEIELISVSWNQD-YGCFAAGT-SCGFRIYNCEP----------FKETFRRDLKSGGFRIVEMLFRCNIL-ALVGA  105 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~-g~~la~g~-d~~v~iw~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~  105 (415)
                      ....|.+.|++++|+|+ +.+||+++ +|.|+||++..          ......  +..|...+.++.|++++. .++++
T Consensus       123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~l~~~~~~~~~l~s~  200 (430)
T 2xyi_A          123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLR--LRGHQKEGYGLSWNPNLNGYLLSA  200 (430)
T ss_dssp             EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEE--EECCSSCCCCEEECTTSTTEEEEE
T ss_pred             EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEE--ecCCCCCeEEEEeCCCCCCeEEEE
Confidence            34679999999999997 67899998 99999999976          233333  347778889999999887 88888


Q ss_pred             CCCCCCCCCeEEEEECCCCCE-------EEEEE-ccCceeEEEEcC-CeEEEE---eCCeEEEEEcCCc---eeeeEEec
Q 014977          106 GDNSQYPPTKVIIWDDHQSRC-------IGEFA-FRSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDL---KLLHQIET  170 (415)
Q Consensus       106 ~~d~~~~~~~i~vwd~~~~~~-------~~~~~-~~~~i~~l~~~~-~~~~~~---~d~~i~iwd~~~~---~~~~~~~~  170 (415)
                      +.|     +.|++|++.++..       ...+. |...|.+++|+| ++.+++   .|+.|++||++++   +.+..+..
T Consensus       201 ~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~  275 (430)
T 2xyi_A          201 SDD-----HTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA  275 (430)
T ss_dssp             CTT-----SCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEEC
T ss_pred             eCC-----CeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeec
Confidence            887     9999999987422       23343 888999999999 555555   6999999999876   56667777


Q ss_pred             cCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC--cceEEEecCccceEEEEeCCCCC-EEEEEeCCCcEEEEEECC
Q 014977          171 LANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL--NMIKLINAHDSHIACFTLTLDGL-LLATASTRGTLIRIFNTV  247 (415)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~--~~~~~~~~~~~~i~~l~~sp~g~-~l~s~s~dg~~I~vwd~~  247 (415)
                      |...  +.++.+++++..++++|+.||.|++|+.+.  ..+..+..|...|.+++|+|+++ +|++++.|+. |+|||+.
T Consensus       276 ~~~~--v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~-i~iwd~~  352 (430)
T 2xyi_A          276 HTAE--VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR-LHVWDLS  352 (430)
T ss_dssp             CSSC--EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSC-CEEEEGG
T ss_pred             CCCC--eEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCc-EEEEeCC
Confidence            7764  555556666654344577899999999875  56788899999999999999995 7999999999 9999997


Q ss_pred             C--------------CcEEEEEecCCCcccEEEEEeCCCCC-EEEEEeCCCeEEEEEceecccC
Q 014977          248 D--------------GTRLQEVRRGVDRAEIYSIALSPNVQ-WLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       248 ~--------------~~~~~~~~~~~~~~~v~~l~~spdg~-~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                      .              .+.+..+.+  |...|.+++|+|+++ +|++++.||.|+||++......
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~~~  414 (430)
T 2xyi_A          353 KIGEEQSTEDAEDGPPELLFIHGG--HTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVYN  414 (430)
T ss_dssp             GTTCCCCHHHHHHCCTTEEEECCC--CSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHHHC
T ss_pred             CCccccCccccccCCcceEEEcCC--CCCCceEEEECCCCCCEEEEEECCCCEEEeEccccccc
Confidence            6              356666666  778999999999999 8999999999999999876543

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.97  E-value=8e-29  Score=229.80  Aligned_cols=240  Identities=18%  Similarity=0.225  Sum_probs=191.5

Q ss_pred             CCCCCceEEEEEeCC---CCEEEEEe-CCcEEEEEccCCc-eeEEEeccCCCeeEEEE------eeeCCeEEEEecCCCC
Q 014977           41 DVDEIELISVSWNQD---YGCFAAGT-SCGFRIYNCEPFK-ETFRRDLKSGGFRIVEM------LFRCNILALVGAGDNS  109 (415)
Q Consensus        41 ~~h~~~V~~l~~sp~---g~~la~g~-d~~v~iw~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~l~s~~~d~  109 (415)
                      .+|...|.+++|+|+   +.+|++|+ |+.|++|++.+.+ ....  +..|...+.++      .|++++..+++++.| 
T Consensus        62 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d-  138 (357)
T 3i2n_A           62 IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYS--VKGHKEIINAIDGIGGLGIGEGAPEIVTGSRD-  138 (357)
T ss_dssp             EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEE--ECCCSSCEEEEEEESGGGCC-CCCEEEEEETT-
T ss_pred             ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEE--EEecccceEEEeeccccccCCCccEEEEEeCC-
Confidence            378999999999998   69999999 9999999998766 3333  44677778887      456788889999887 


Q ss_pred             CCCCCeEEEEECCCCC-EEEEEE-cc----CceeEEE----EcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcc
Q 014977          110 QYPPTKVIIWDDHQSR-CIGEFA-FR----SDVRSVK----LSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRG  176 (415)
Q Consensus       110 ~~~~~~i~vwd~~~~~-~~~~~~-~~----~~i~~l~----~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~  176 (415)
                          +.|++||+.+++ .+..+. +.    ..+.++.    |++++.+++   .|+.|++||+++++.... ..+..  .
T Consensus       139 ----~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~--~  211 (357)
T 3i2n_A          139 ----GTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKN--G  211 (357)
T ss_dssp             ----SCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSS--C
T ss_pred             ----CeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCC--c
Confidence                999999999887 666665 33    3788888    678888887   579999999999887544 34454  4


Q ss_pred             eEEEecCC---CceEEEEeCCccCeEEEEEcCC-cceEE-----EecCccceEEEEeCCCCC-EEEEEeCCCcEEEEEEC
Q 014977          177 LCCLSHHS---STSVLACPGLQRGQVRIEHFGL-NMIKL-----INAHDSHIACFTLTLDGL-LLATASTRGTLIRIFNT  246 (415)
Q Consensus       177 ~~~~~~~~---~~~~l~~~g~~dg~v~i~~~~~-~~~~~-----~~~~~~~i~~l~~sp~g~-~l~s~s~dg~~I~vwd~  246 (415)
                      +.++.++|   ++.++++ ++.||.|++|+... +....     +.+|...|.+++|+|+++ +|++++.||. |++||+
T Consensus       212 v~~~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~iwd~  289 (357)
T 3i2n_A          212 VCSLEFDRKDISMNKLVA-TSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGG-LHLWKY  289 (357)
T ss_dssp             EEEEEESCSSSSCCEEEE-EESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSE-EEEEEE
T ss_pred             eEEEEcCCCCCCCCEEEE-ECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCc-EEEeec
Confidence            55566665   6667766 66899999988654 23333     348999999999999998 8999999999 999999


Q ss_pred             CCC-------------------cEEEEEecCCCcccEEEEEeCCCCCEEE-EEeCCCeEEEEEceecc
Q 014977          247 VDG-------------------TRLQEVRRGVDRAEIYSIALSPNVQWLA-VASDKGTVHIFSLRVRV  294 (415)
Q Consensus       247 ~~~-------------------~~~~~~~~~~~~~~v~~l~~spdg~~l~-s~s~dg~i~vwd~~~~~  294 (415)
                      +++                   +.+..+..  |...|.+++|+|++++|+ +++.||.|+|||+.+.+
T Consensus       290 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~  355 (357)
T 3i2n_A          290 EYPIQRSKKDSEGIEMGVAGSVSLLQNVTL--STQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN  355 (357)
T ss_dssp             ECCSCC--CCTTSCCCCCCCEEEEEEEEEC--CSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred             CCCcccccccCCCCccccccccceeecccc--CCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence            754                   35666776  788999999999999998 89999999999998765

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.3e-29  Score=244.79  Aligned_cols=243  Identities=12%  Similarity=0.061  Sum_probs=186.9

Q ss_pred             CCCCCceEEEEEeCC------CCEEEEEe-CCcEEEEEccCCcee---------EEEeccCCCeeEEEEeeeCCeEEEEe
Q 014977           41 DVDEIELISVSWNQD------YGCFAAGT-SCGFRIYNCEPFKET---------FRRDLKSGGFRIVEMLFRCNILALVG  104 (415)
Q Consensus        41 ~~h~~~V~~l~~sp~------g~~la~g~-d~~v~iw~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l~s  104 (415)
                      ..|.+.|.+++|+|+      +.+||+++ |+.|+||++......         ....+..|...+.++.|+++. .|++
T Consensus       204 ~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~las  282 (524)
T 2j04_B          204 VHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVC  282 (524)
T ss_dssp             EECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEE
T ss_pred             EecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEE
Confidence            467889999999997      57999999 999999999764321         011344677889999998876 5788


Q ss_pred             cCCCCCCCCCeEEEEECCCCC-EEEEEE-ccCceeEE--EEcCCe-EEEE---eCCeEEEEEcCCceeeeEEeccCCCcc
Q 014977          105 AGDNSQYPPTKVIIWDDHQSR-CIGEFA-FRSDVRSV--KLSRDR-IVVV---LEHKIYVYSFVDLKLLHQIETLANLRG  176 (415)
Q Consensus       105 ~~~d~~~~~~~i~vwd~~~~~-~~~~~~-~~~~i~~l--~~~~~~-~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~  176 (415)
                      ++.|     |+|++||+.++. +...+. |...|.++  .|++++ .+++   .|++|++||+++++++..+.+|.....
T Consensus       283 gs~D-----gtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~  357 (524)
T 2j04_B          283 GFKN-----GFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSN  357 (524)
T ss_dssp             EETT-----SEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCS
T ss_pred             EeCC-----CEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCc
Confidence            8877     999999998764 444555 89999999  578887 6666   699999999999888777776654222


Q ss_pred             eEEEecCCCceEEEEeCCccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC------
Q 014977          177 LCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG------  249 (415)
Q Consensus       177 ~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~------  249 (415)
                      +.+++++|++..+++ ++.|++|++|+.+. ..+..+.+|...|++++|+|+|++|++|+.|+. |++||+..+      
T Consensus       358 v~~v~fsp~~~~l~s-~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgt-v~lwd~~~~~~~~~~  435 (524)
T 2j04_B          358 LVPVVYCPQIYSYIY-SDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGS-LIITNAARRLLHGIK  435 (524)
T ss_dssp             CCCEEEETTTTEEEE-ECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTE-EECCBSCSSTTTCC-
T ss_pred             ccceEeCCCcCeEEE-eCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCE-EEEEechHhhccccc
Confidence            334455555666765 56899999998664 556788899999999999999999999999999 999985321      


Q ss_pred             --------------------------------------cEEEEEecCCCcccEEEEEeCCCCC---EEEEEeCCCeEEEE
Q 014977          250 --------------------------------------TRLQEVRRGVDRAEIYSIALSPNVQ---WLAVASDKGTVHIF  288 (415)
Q Consensus       250 --------------------------------------~~~~~~~~~~~~~~v~~l~~spdg~---~l~s~s~dg~i~vw  288 (415)
                                                            ..+..+.+  |...|.+++|+|++.   +||+|+.||.|+||
T Consensus       436 ~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~g--h~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw  513 (524)
T 2j04_B          436 NSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDA--HGINITCTKWNETSAGGKCYAFSNSAGLLTLE  513 (524)
T ss_dssp             -----CCCCEEEECBCCSSSCEEEECCCCCCCC---------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEE
T ss_pred             cCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecC--CCceEEEEECCCCCCccHHHHhhccCceEEEE
Confidence                                                  01112222  567899999999964   99999999999999


Q ss_pred             Eceec
Q 014977          289 SLRVR  293 (415)
Q Consensus       289 d~~~~  293 (415)
                      +++-.
T Consensus       514 ~l~~~  518 (524)
T 2j04_B          514 YLSLE  518 (524)
T ss_dssp             ECSCC
T ss_pred             Ecccc
Confidence            98753

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=1.8e-28  Score=232.09  Aligned_cols=248  Identities=13%  Similarity=0.149  Sum_probs=201.2

Q ss_pred             ccCCCCCCceEEEEEeC-CCCEEEEEe-CCcEEEEEccCCce-----eEEEeccCCCeeEEEEeeeCCe-EEEEecCCCC
Q 014977           38 AFSDVDEIELISVSWNQ-DYGCFAAGT-SCGFRIYNCEPFKE-----TFRRDLKSGGFRIVEMLFRCNI-LALVGAGDNS  109 (415)
Q Consensus        38 ~~~~~h~~~V~~l~~sp-~g~~la~g~-d~~v~iw~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~  109 (415)
                      ....+|.+.|++++|+| ++.+|++|+ |+.|+||++.+.+.     .....+..|...+.++.|++++ .++++++.| 
T Consensus        75 ~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~d-  153 (402)
T 2aq5_A           75 PLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD-  153 (402)
T ss_dssp             CCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETT-
T ss_pred             ceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCC-
Confidence            34678999999999999 999999999 99999999987531     1112344788899999999998 688888887 


Q ss_pred             CCCCCeEEEEECCCCCEEEEE--E-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEE-eccCCCcceEEEec
Q 014977          110 QYPPTKVIIWDDHQSRCIGEF--A-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQI-ETLANLRGLCCLSH  182 (415)
Q Consensus       110 ~~~~~~i~vwd~~~~~~~~~~--~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~  182 (415)
                          +.|++||+.+++.+..+  . |...|.+++|+|++.+++   .|+.|++||+++++.+..+ ..|... .+..+.+
T Consensus       154 ----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~  228 (402)
T 2aq5_A          154 ----NVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGT-RPVHAVF  228 (402)
T ss_dssp             ----SCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSS-SCCEEEE
T ss_pred             ----CEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCC-cceEEEE
Confidence                99999999999999998  4 899999999999998777   6999999999999998888 555542 2455566


Q ss_pred             CCCceEEEEeC---CccCeEEEEEcCCcc--eEEEe-cCccceEEEEeCCCCCEEEE-EeCCCcEEEEEECCCCcE-EEE
Q 014977          183 HSSTSVLACPG---LQRGQVRIEHFGLNM--IKLIN-AHDSHIACFTLTLDGLLLAT-ASTRGTLIRIFNTVDGTR-LQE  254 (415)
Q Consensus       183 ~~~~~~l~~~g---~~dg~v~i~~~~~~~--~~~~~-~~~~~i~~l~~sp~g~~l~s-~s~dg~~I~vwd~~~~~~-~~~  254 (415)
                      ++++.++++ |   +.|+.|++|+.....  +.... .|...+.+++|+|++++|++ ++.|+. |++||+.+++. +..
T Consensus       229 ~~~~~~l~~-g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~-i~i~d~~~~~~~~~~  306 (402)
T 2aq5_A          229 VSEGKILTT-GFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSS-IRYFEITSEAPFLHY  306 (402)
T ss_dssp             CSTTEEEEE-EECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSC-EEEEEECSSTTCEEE
T ss_pred             cCCCcEEEE-eccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCe-EEEEEecCCCcceEe
Confidence            677777766 5   689999999987632  33333 57788999999999999865 557999 99999998884 556


Q ss_pred             EecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceeccc
Q 014977          255 VRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV  295 (415)
Q Consensus       255 ~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~  295 (415)
                      +....+...|.+++|+|++.++++  .++.+++|++.+++.
T Consensus       307 l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~  345 (402)
T 2aq5_A          307 LSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC  345 (402)
T ss_dssp             EEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred             ecccccCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence            655335678999999999998864  567999999998653

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.3e-27  Score=223.36  Aligned_cols=245  Identities=12%  Similarity=0.122  Sum_probs=194.1

Q ss_pred             ccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECC--CCCEEEEEE-ccCceeEEEEcCC--eEEEE---eCCeE
Q 014977           83 LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH--QSRCIGEFA-FRSDVRSVKLSRD--RIVVV---LEHKI  154 (415)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~--~~~~~~~~~-~~~~i~~l~~~~~--~~~~~---~d~~i  154 (415)
                      +.+|...|.++.|++++.++++++.|     +.|++||+.  +++.+..+. |...|.+++|+++  +.+++   .|+.|
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v   81 (379)
T 3jrp_A            7 ANAHNELIHDAVLDYYGKRLATCSSD-----KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV   81 (379)
T ss_dssp             EEECCCCEEEEEECSSSSEEEEEETT-----SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred             ecCCcccEEEEEEcCCCCEEEEEECC-----CcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence            44788899999999999999999887     999999987  556666666 8999999999876  67666   68999


Q ss_pred             EEEEcCCce--eeeEEeccCCCcceEEEecCCC--ceEEEEeCCccCeEEEEEcCCc---ceEEEecCccceEEEEeCC-
Q 014977          155 YVYSFVDLK--LLHQIETLANLRGLCCLSHHSS--TSVLACPGLQRGQVRIEHFGLN---MIKLINAHDSHIACFTLTL-  226 (415)
Q Consensus       155 ~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~g~~dg~v~i~~~~~~---~~~~~~~~~~~i~~l~~sp-  226 (415)
                      ++||+.+++  .+..+..|...  +.++.++++  +.++++ ++.|+.|++|+....   ....+..|...|.+++|+| 
T Consensus        82 ~iwd~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~l~~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  158 (379)
T 3jrp_A           82 LIWKEENGRWSQIAVHAVHSAS--VNSVQWAPHEYGPLLLV-ASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA  158 (379)
T ss_dssp             EEEEEETTEEEEEEEECCCSSC--EEEEEECCGGGCSEEEE-EETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCC
T ss_pred             EEEEcCCCceeEeeeecCCCcc--eEEEEeCCCCCCCEEEE-ecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCc
Confidence            999999887  56666666664  455555555  667766 668999999998764   4556778999999999999 


Q ss_pred             ------------CCCEEEEEeCCCcEEEEEECCCCc----EEEEEecCCCcccEEEEEeCCC---CCEEEEEeCCCeEEE
Q 014977          227 ------------DGLLLATASTRGTLIRIFNTVDGT----RLQEVRRGVDRAEIYSIALSPN---VQWLAVASDKGTVHI  287 (415)
Q Consensus       227 ------------~g~~l~s~s~dg~~I~vwd~~~~~----~~~~~~~~~~~~~v~~l~~spd---g~~l~s~s~dg~i~v  287 (415)
                                  ++.+|++++.|+. |++||+++++    .+..+..  |...|.+++|+|+   +++|++++.||.|++
T Consensus       159 ~~~~~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~--h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~i  235 (379)
T 3jrp_A          159 TIEEDGEHNGTKESRKFVTGGADNL-VKIWKYNSDAQTYVLESTLEG--HSDWVRDVAWSPTVLLRSYLASVSQDRTCII  235 (379)
T ss_dssp             C----------CTTCEEEEEETTSC-EEEEEEETTTTEEEEEEEECC--CSSCEEEEEECCCCSSSEEEEEEETTSCEEE
T ss_pred             cccccccccCCCCCCEEEEEeCCCe-EEEEEecCCCcceeeEEEEec--ccCcEeEEEECCCCCCCCeEEEEeCCCEEEE
Confidence                        6999999999999 9999998765    3445555  7889999999999   899999999999999


Q ss_pred             EEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEe
Q 014977          288 FSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAF  367 (415)
Q Consensus       288 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (415)
                      ||+++++.....                                    ..    +. .          .-.......++|
T Consensus       236 wd~~~~~~~~~~------------------------------------~~----~~-~----------~~~~~~v~~~~~  264 (379)
T 3jrp_A          236 WTQDNEQGPWKK------------------------------------TL----LK-E----------EKFPDVLWRASW  264 (379)
T ss_dssp             EEESSTTSCCEE------------------------------------EE----SS-S----------SCCSSCEEEEEE
T ss_pred             EeCCCCCcccee------------------------------------ee----ec-c----------ccCCCcEEEEEE
Confidence            999887532100                                    00    00 0          001245667899


Q ss_pred             cCC-CEEEEEEeCCcEEEEEEec
Q 014977          368 GSQ-NTVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       368 ~~~-~~i~~~~~dg~~~~~~~~~  389 (415)
                      +++ ..|++++.||.|++|++..
T Consensus       265 s~~g~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          265 SLSGNVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             CSSSCCEEEEESSSSEEEEEEEE
T ss_pred             cCCCCEEEEecCCCcEEEEeCCC
Confidence            998 6688888899999999985

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.96  E-value=5.2e-28  Score=231.27  Aligned_cols=240  Identities=14%  Similarity=0.115  Sum_probs=190.9

Q ss_pred             CCCCceEEEEEeCCCCEEEEEe-CCcEEEEEcc---CCceeE--------EEeccC--CCeeEEEEe--eeCCeEEEEec
Q 014977           42 VDEIELISVSWNQDYGCFAAGT-SCGFRIYNCE---PFKETF--------RRDLKS--GGFRIVEML--FRCNILALVGA  105 (415)
Q Consensus        42 ~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~---~~~~~~--------~~~~~~--~~~~~~~~~--~~~~~~~l~s~  105 (415)
                      +|...|.+++|+|++.+|++|+ |+.|++||++   ..+...        ...+..  +...+.++.  +++++..++++
T Consensus       109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  188 (437)
T 3gre_A          109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVAL  188 (437)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEE
T ss_pred             cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEE
Confidence            6999999999999999999999 9999999995   222211        111211  344455555  66789999999


Q ss_pred             CCCCCCCCCeEEEEECCCCCEEEEEE---ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEe-ccCCCcceE
Q 014977          106 GDNSQYPPTKVIIWDDHQSRCIGEFA---FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIE-TLANLRGLC  178 (415)
Q Consensus       106 ~~d~~~~~~~i~vwd~~~~~~~~~~~---~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~  178 (415)
                      +.|     +.|++||+.+++.+..+.   |...|.+++|+|++.+++   .|+.|++||+++++.+..+. .+..++..+
T Consensus       189 ~~d-----~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~  263 (437)
T 3gre_A          189 TNL-----SRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHV  263 (437)
T ss_dssp             ETT-----SEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEE
T ss_pred             eCC-----CeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEE
Confidence            988     999999999999999887   689999999999998887   69999999999999988875 454433334


Q ss_pred             EE--ecCCCceEEEEeCCccCeEEEEEcC-CcceEEEec--------------------------CccceEEEEeCCCCC
Q 014977          179 CL--SHHSSTSVLACPGLQRGQVRIEHFG-LNMIKLINA--------------------------HDSHIACFTLTLDGL  229 (415)
Q Consensus       179 ~~--~~~~~~~~l~~~g~~dg~v~i~~~~-~~~~~~~~~--------------------------~~~~i~~l~~sp~g~  229 (415)
                      ++  .+++++.++++ |+.||.|++|+.. ++.+..+.+                          |...|.+++|+ +++
T Consensus       264 ~~~~~~s~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~  341 (437)
T 3gre_A          264 EVCQFYGKNSVIVVG-GSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK  341 (437)
T ss_dssp             EECTTTCTTEEEEEE-ESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE
T ss_pred             EeccccCCCccEEEE-EcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cce
Confidence            33  34467777776 7789999999986 444555543                          55668888998 778


Q ss_pred             EEEEEeCCCcEEEEEECCCCcEEEEEecCC-----------------------------------CcccEEEEEeCCC--
Q 014977          230 LLATASTRGTLIRIFNTVDGTRLQEVRRGV-----------------------------------DRAEIYSIALSPN--  272 (415)
Q Consensus       230 ~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~-----------------------------------~~~~v~~l~~spd--  272 (415)
                      +|++++.|+. |++||+.+++.+..+..+.                                   |...|++++|+++  
T Consensus       342 ~l~s~~~d~~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~  420 (437)
T 3gre_A          342 ILLTDEATSS-IVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDE  420 (437)
T ss_dssp             EEEEEGGGTE-EEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSS
T ss_pred             EEEecCCCCe-EEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCC
Confidence            9999999999 9999999988777666531                                   6778999999988  


Q ss_pred             CCEEEEEeCCCeEEEEE
Q 014977          273 VQWLAVASDKGTVHIFS  289 (415)
Q Consensus       273 g~~l~s~s~dg~i~vwd  289 (415)
                      +.+|++|+.||.|+||+
T Consensus       421 ~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          421 TPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             SEEEEEEETTSCEEEEC
T ss_pred             ceEEEEEcCCceEEEeC
Confidence            78999999999999995

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.3e-27  Score=215.88  Aligned_cols=239  Identities=14%  Similarity=0.185  Sum_probs=193.1

Q ss_pred             cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCc-eeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFK-ETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i  116 (415)
                      ....|...|.+++|+|++++|++++ |+.+++|++.... ......+..+...+.++.|.++  .+++++.|     +.|
T Consensus        54 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~d-----~~i  126 (313)
T 3odt_A           54 VVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDG--VVISGSWD-----KTA  126 (313)
T ss_dssp             EEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEETT--EEEEEETT-----SEE
T ss_pred             EeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEecCC--EEEEEeCC-----CCE
Confidence            3457899999999999999999999 9999999987532 1112234578888899999544  56666666     999


Q ss_pred             EEEECCCCCEEEEEE-ccCceeEEEEcC-CeEEEE---eCCeEEEEEcCCceeeeEEec-cCCCcceEEEecCCCceEEE
Q 014977          117 IIWDDHQSRCIGEFA-FRSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDLKLLHQIET-LANLRGLCCLSHHSSTSVLA  190 (415)
Q Consensus       117 ~vwd~~~~~~~~~~~-~~~~i~~l~~~~-~~~~~~---~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~  190 (415)
                      ++||  .++.+..+. |...+.++.+.+ ++..++   .|+.|++||  ..+....+.. +..  .+.++.+++++. ++
T Consensus       127 ~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~--~i~~~~~~~~~~-~~  199 (313)
T 3odt_A          127 KVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHND--VVRHLAVVDDGH-FI  199 (313)
T ss_dssp             EEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSS--CEEEEEEEETTE-EE
T ss_pred             EEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcc--cEEEEEEcCCCe-EE
Confidence            9999  677777777 899999999987 666665   689999999  4456666655 555  445555555666 44


Q ss_pred             EeCCccCeEEEEEcC-CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEe
Q 014977          191 CPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIAL  269 (415)
Q Consensus       191 ~~g~~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~  269 (415)
                      + ++.|+.|++|+.. .+.+..+..|...|.+++|+|++ .|++++.|+. |++||+++++.+..+..  |...|.+++|
T Consensus       200 ~-~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~-v~iwd~~~~~~~~~~~~--~~~~i~~~~~  274 (313)
T 3odt_A          200 S-CSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRT-VRIWSKENGSLKQVITL--PAISIWSVDC  274 (313)
T ss_dssp             E-EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSE-EEEECTTTCCEEEEEEC--SSSCEEEEEE
T ss_pred             E-ccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCE-EEEEECCCCceeEEEec--cCceEEEEEE
Confidence            4 6689999999876 56778888999999999999999 5889999999 99999999999999987  7779999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEEceecccCC
Q 014977          270 SPNVQWLAVASDKGTVHIFSLRVRVVGE  297 (415)
Q Consensus       270 spdg~~l~s~s~dg~i~vwd~~~~~~~~  297 (415)
                      +|+++ +++++.||.|++||+++++...
T Consensus       275 ~~~~~-~~~~~~dg~i~iw~~~~~~~~~  301 (313)
T 3odt_A          275 MSNGD-IIVGSSDNLVRIFSQEKSRWAS  301 (313)
T ss_dssp             CTTSC-EEEEETTSCEEEEESCGGGCCC
T ss_pred             ccCCC-EEEEeCCCcEEEEeCCCCceee
Confidence            99998 5679999999999999887543

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=4.3e-27  Score=224.46  Aligned_cols=276  Identities=11%  Similarity=0.013  Sum_probs=218.4

Q ss_pred             CCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEE---eccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEE
Q 014977           44 EIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRR---DLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIW  119 (415)
Q Consensus        44 ~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vw  119 (415)
                      ...+.+++|+|++.+++++. ++.|++||+++.+.....   .+..+...+.++.|++++.++++++.+     +.|++|
T Consensus       122 ~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d-----~~v~~~  196 (433)
T 3bws_A          122 GFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQA-----NAVHVF  196 (433)
T ss_dssp             SSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG-----TEEEEE
T ss_pred             CCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCC-----CEEEEE
Confidence            34566899999777777777 889999999986654322   223667788999999999999999887     999999


Q ss_pred             ECCCCCEEEEEE-ccCceeEEEEcCCeEEEE----eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCC
Q 014977          120 DDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL  194 (415)
Q Consensus       120 d~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  194 (415)
                      |+.+++.+..+. +...+.+++|+|++..++    .++.|++||+.+++.+..+..+.   .+..+.+++++..+++++.
T Consensus       197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~~~  273 (433)
T 3bws_A          197 DLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIG---LPRGLLLSKDGKELYIAQF  273 (433)
T ss_dssp             ETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCS---EEEEEEECTTSSEEEEEEE
T ss_pred             ECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCC---CceEEEEcCCCCEEEEEEC
Confidence            999999998887 788999999999987664    47999999999998887776543   4667777778877776442


Q ss_pred             -------ccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEE-EEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEE
Q 014977          195 -------QRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLL-ATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYS  266 (415)
Q Consensus       195 -------~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l-~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~  266 (415)
                             .|+.|++|+...........|...+..++|+|+++.+ ++++.++. |++||+.+++.+..+.   +...+.+
T Consensus       274 ~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~-v~v~d~~~~~~~~~~~---~~~~~~~  349 (433)
T 3bws_A          274 SASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSK-IEVYDLKEKKVQKSIP---VFDKPNT  349 (433)
T ss_dssp             ESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTE-EEEEETTTTEEEEEEE---CSSSEEE
T ss_pred             CCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCE-EEEEECCCCcEEEEec---CCCCCCe
Confidence                   4789999998766555555677789999999999754 66688998 9999999999888776   4567999


Q ss_pred             EEeCCCCCEEEEEeC---------------CCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCC
Q 014977          267 IALSPNVQWLAVASD---------------KGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANP  331 (415)
Q Consensus       267 l~~spdg~~l~s~s~---------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (415)
                      ++|+|+|++|++++.               ||.|++||+.+++...                                  
T Consensus       350 ~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~----------------------------------  395 (433)
T 3bws_A          350 IALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKE----------------------------------  395 (433)
T ss_dssp             EEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEE----------------------------------
T ss_pred             EEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEE----------------------------------
Confidence            999999999988876               5799999998776321                                  


Q ss_pred             CCcccccccccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEe-CCcEEEEEEe
Q 014977          332 GSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSM-DGSFYRCSFD  388 (415)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~-dg~~~~~~~~  388 (415)
                                            .+.. ......++|+++ +.+++++. ||.+++|+++
T Consensus       396 ----------------------~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          396 ----------------------FWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             ----------------------EEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred             ----------------------EecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence                                  1222 134566889998 56677776 9999999985

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.96  E-value=2.4e-28  Score=231.17  Aligned_cols=239  Identities=8%  Similarity=0.133  Sum_probs=190.6

Q ss_pred             ceEEEEEeCCCCEEEE-Ee-CCcEEEEEccCCcee--EEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCeEEEEE
Q 014977           46 ELISVSWNQDYGCFAA-GT-SCGFRIYNCEPFKET--FRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWD  120 (415)
Q Consensus        46 ~V~~l~~sp~g~~la~-g~-d~~v~iw~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~i~vwd  120 (415)
                      ....++++|+...++. ++ +|.|+||+++..+..  ....+.+|...+.++.|++ ++.++++++.|     +.|++||
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~d-----g~v~vw~  110 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSED-----CTVMVWE  110 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETT-----SEEEEEE
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCC-----CeEEEEE
Confidence            3456889998766554 55 999999999754332  1123457888999999999 88899999988     9999999


Q ss_pred             CCCC-------CEEEEEE-ccCceeEEEEcCCe-EEEE---eCCeEEEEEcCCceeeeEE--eccCCCcceEEEecCCCc
Q 014977          121 DHQS-------RCIGEFA-FRSDVRSVKLSRDR-IVVV---LEHKIYVYSFVDLKLLHQI--ETLANLRGLCCLSHHSST  186 (415)
Q Consensus       121 ~~~~-------~~~~~~~-~~~~i~~l~~~~~~-~~~~---~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  186 (415)
                      +.++       +.+..+. |...|.+++|+|++ .+++   .|+.|++||+.+++.+..+  ..|..  .+.++.+++++
T Consensus       111 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~v~~~~~~~~~  188 (402)
T 2aq5_A          111 IPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPD--TIYSVDWSRDG  188 (402)
T ss_dssp             CCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCS--CEEEEEECTTS
T ss_pred             ccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCC--ceEEEEECCCC
Confidence            9887       5667776 89999999999998 4555   6899999999999999888  56666  55666666677


Q ss_pred             eEEEEeCCccCeEEEEEcCC-cceEEE-ecCccc-eEEEEeCCCCCEEEEE---eCCCcEEEEEECCCCcE-EEEEecCC
Q 014977          187 SVLACPGLQRGQVRIEHFGL-NMIKLI-NAHDSH-IACFTLTLDGLLLATA---STRGTLIRIFNTVDGTR-LQEVRRGV  259 (415)
Q Consensus       187 ~~l~~~g~~dg~v~i~~~~~-~~~~~~-~~~~~~-i~~l~~sp~g~~l~s~---s~dg~~I~vwd~~~~~~-~~~~~~~~  259 (415)
                      .+|++ ++.|+.|++|+... +.+..+ ..|... +.++.|+|++++|++|   +.|+. |++||+++++. +...... 
T Consensus       189 ~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~-i~iwd~~~~~~~~~~~~~~-  265 (402)
T 2aq5_A          189 ALICT-SCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQ-VALWDTKHLEEPLSLQELD-  265 (402)
T ss_dssp             SCEEE-EETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEE-EEEEETTBCSSCSEEEECC-
T ss_pred             CEEEE-EecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCce-EEEEcCccccCCceEEecc-
Confidence            77776 66899999999764 556666 678766 8999999999999999   78999 99999988764 3333321 


Q ss_pred             CcccEEEEEeCCCCCEEEE-EeCCCeEEEEEceecc
Q 014977          260 DRAEIYSIALSPNVQWLAV-ASDKGTVHIFSLRVRV  294 (415)
Q Consensus       260 ~~~~v~~l~~spdg~~l~s-~s~dg~i~vwd~~~~~  294 (415)
                      +...+.+++|+|++++|++ ++.||.|++||+.+++
T Consensus       266 ~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~  301 (402)
T 2aq5_A          266 TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA  301 (402)
T ss_dssp             CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred             CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence            5668999999999999975 5579999999998876

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=7.8e-28  Score=222.77  Aligned_cols=228  Identities=8%  Similarity=0.013  Sum_probs=173.3

Q ss_pred             EEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECC-------
Q 014977           51 SWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH-------  122 (415)
Q Consensus        51 ~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~-------  122 (415)
                      .+.+++.+|++|+ |+.|++||+++.+......    ...+..+.++|+   +++++.|     +.|++|+..       
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~----~~~v~~~~~~~~---~~s~s~D-----~~i~~w~~~~~~~~~~  110 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT----TPNPRTGGEHPA---IISRGPC-----NRLLLLYPGNQITILD  110 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE----EECCCTTCCCCS---EEEECST-----TEEEEEETTTEEEEEE
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe----cCCceeeeeCCc---eEEecCC-----CeEEEEEccCceEEee
Confidence            3446788999999 9999999999876554432    233445667777   7788877     999999654       


Q ss_pred             --CCCEEEEEE--ccCceeEEEEcC--CeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeC
Q 014977          123 --QSRCIGEFA--FRSDVRSVKLSR--DRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG  193 (415)
Q Consensus       123 --~~~~~~~~~--~~~~i~~l~~~~--~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  193 (415)
                        +++.+..+.  |...|.+++|+|  ++.+++   .|+.|++||+++++.+.....+.. ..+.++.++|++.++++ |
T Consensus       111 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~-~~i~~~~~~pdg~~las-g  188 (343)
T 3lrv_A          111 SKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSD-VEYSSGVLHKDSLLLAL-Y  188 (343)
T ss_dssp             TTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSS-CCCCEEEECTTSCEEEE-E
T ss_pred             cCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCC-CceEEEEECCCCCEEEE-E
Confidence              666666665  567899999999  888887   699999999999888666543322 23556666777778876 7


Q ss_pred             CccCeEEEEEcCCcc-e-EEEec-CccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCC-CcccE--EEE
Q 014977          194 LQRGQVRIEHFGLNM-I-KLINA-HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGV-DRAEI--YSI  267 (415)
Q Consensus       194 ~~dg~v~i~~~~~~~-~-~~~~~-~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~-~~~~v--~~l  267 (415)
                      +.||.|++|+.+... + ..+.. |..+|.+++|+|+|.+|++++ ++. |++||+++++.+..+.... +...+  .++
T Consensus       189 ~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  266 (343)
T 3lrv_A          189 SPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQT-VVCFDLRKDVGTLAYPTYTIPEFKTGTVTY  266 (343)
T ss_dssp             CTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSB-EEEEETTSSTTCBSSCCCBC-----CCEEE
T ss_pred             cCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCe-EEEEEcCCCCcceeecccccccccccceEE
Confidence            799999999987644 3 56777 999999999999999999999 458 9999999887654443200 11223  469


Q ss_pred             EeCCCCCEEEEEeC-CCeEEEEEceecc
Q 014977          268 ALSPNVQWLAVASD-KGTVHIFSLRVRV  294 (415)
Q Consensus       268 ~~spdg~~l~s~s~-dg~i~vwd~~~~~  294 (415)
                      +|+|+|++|++++. |+.|+||++++..
T Consensus       267 ~~~~~g~~l~~~s~~d~~i~v~~~~~~~  294 (343)
T 3lrv_A          267 DIDDSGKNMIAYSNESNSLTIYKFDKKT  294 (343)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred             EECCCCCEEEEecCCCCcEEEEEEcccc
Confidence            99999999999998 9999999997665

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.96  E-value=3.1e-29  Score=234.87  Aligned_cols=240  Identities=13%  Similarity=0.101  Sum_probs=186.5

Q ss_pred             CCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCC--CEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEc
Q 014977           86 GGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQS--RCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSF  159 (415)
Q Consensus        86 ~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~--~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~  159 (415)
                      +...+.++.|++++.++++++.|     +.|++||+.++  +.+..+. |...|.+++|+|++.+++   .|+.|++||+
T Consensus        10 ~~~~v~~~~~s~~g~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~   84 (377)
T 3dwl_C           10 LPKPSYEHAFNSQRTEFVTTTAT-----NQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEK   84 (377)
T ss_dssp             CSSCCSCCEECSSSSEEECCCSS-----SCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC--
T ss_pred             CCCcEEEEEECCCCCEEEEecCC-----CEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence            44568889999999999999887     99999999988  5666666 899999999999988777   5899999999


Q ss_pred             CCce---eeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcc----eEEEec-CccceEEEEeCCCCCEE
Q 014977          160 VDLK---LLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNM----IKLINA-HDSHIACFTLTLDGLLL  231 (415)
Q Consensus       160 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~----~~~~~~-~~~~i~~l~~sp~g~~l  231 (415)
                      .+++   ....+..|..  .+.++.+++++.+|++ ++.|+.|++|+.....    ...+.. |...|.+++|+|++++|
T Consensus        85 ~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l  161 (377)
T 3dwl_C           85 RPDGTWKQTLVLLRLNR--AATFVRWSPNEDKFAV-GSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLL  161 (377)
T ss_dssp             ----CCCCEEECCCCSS--CEEEEECCTTSSCCEE-EESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEE
T ss_pred             CCCCceeeeeEecccCC--ceEEEEECCCCCEEEE-EecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEE
Confidence            8876   4555566665  5666777777777776 6689999999887653    677777 99999999999999999


Q ss_pred             EEEeCCCcEEEEEECC------------------CCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceec
Q 014977          232 ATASTRGTLIRIFNTV------------------DGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR  293 (415)
Q Consensus       232 ~s~s~dg~~I~vwd~~------------------~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~  293 (415)
                      ++++.|+. |++||+.                  .++.+..+ .  |...|.+++|+|++++|++++.||.|++||++++
T Consensus       162 ~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~  237 (377)
T 3dwl_C          162 AAGCADRK-AYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-P--SGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAP  237 (377)
T ss_dssp             EEEESSSC-EEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-C--CSSSEEEEEECTTSSCEEEEETTTEEC-CEECST
T ss_pred             EEEeCCCE-EEEEEEEecccCCCccccccccccchhhhhhcc-c--CCceEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence            99999999 9999985                  24455555 4  8889999999999999999999999999999988


Q ss_pred             ccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCCCEE
Q 014977          294 VVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTV  373 (415)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  373 (415)
                      +....                                                    ....+..+...+..++|++++.+
T Consensus       238 ~~~~~----------------------------------------------------~~~~~~~~~~~v~~~~~s~~~~~  265 (377)
T 3dwl_C          238 EQPPR----------------------------------------------------ALITVKLSQLPLRSLLWANESAI  265 (377)
T ss_dssp             TSCEE----------------------------------------------------ECCCEECSSSCEEEEEEEETTEE
T ss_pred             CCcce----------------------------------------------------eeEeecCCCCceEEEEEcCCCCE
Confidence            74100                                                    00122233345677899999999


Q ss_pred             EEEEeCCcEEEEEEec
Q 014977          374 VIVSMDGSFYRCSFDP  389 (415)
Q Consensus       374 ~~~~~dg~~~~~~~~~  389 (415)
                      ++++.++.+.+|....
T Consensus       266 l~~~~~~~~~~~~~~~  281 (377)
T 3dwl_C          266 VAAGYNYSPILLQGNE  281 (377)
T ss_dssp             EEEESSSSEEEECCCC
T ss_pred             EEEEcCCcEEEEEeCC
Confidence            9999998888998763

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.96  E-value=5.2e-28  Score=228.35  Aligned_cols=305  Identities=12%  Similarity=0.089  Sum_probs=211.4

Q ss_pred             CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE-----------
Q 014977           64 SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-----------  131 (415)
Q Consensus        64 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-----------  131 (415)
                      ++.+++|+++......  .+..|...+.++.|+| ++.++++++.|     +.|++||+.+++....+.           
T Consensus        22 ~~~~~v~~~~~~~~~~--~~~~h~~~v~~~~~s~~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~   94 (408)
T 4a11_B           22 ESTRRVLGLELNKDRD--VERIHGGGINTLDIEPVEGRYMLSGGSD-----GVIVLYDLENSSRQSYYTCKAVCSIGRDH   94 (408)
T ss_dssp             HHHHHHHTEEECTTEE--ECCCCSSCEEEEEECTTTCCEEEEEETT-----SCEEEEECCCCSSSSCEEECEEEEECTTC
T ss_pred             cCcceeeccccCccee--eeeccCCcEEEEEEecCCCCEEEEEcCC-----CeEEEEECCCCcccceEeccccccccccc
Confidence            4456778777644433  3447889999999999 99999999988     999999998876655443           


Q ss_pred             ---ccCceeEEEEcC-CeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCC-CceEEEEeCCccCeEEEEE
Q 014977          132 ---FRSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHS-STSVLACPGLQRGQVRIEH  203 (415)
Q Consensus       132 ---~~~~i~~l~~~~-~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~g~~dg~v~i~~  203 (415)
                         |...|.+++|+| ++.+++   .|+.|++||+.+++.+..+.. ...+..+.+.+.. ++.++++ ++.++.|++|+
T Consensus        95 ~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~d  172 (408)
T 4a11_B           95 PDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNF-EETVYSHHMSPVSTKHCLVAV-GTRGPKVQLCD  172 (408)
T ss_dssp             TTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEEC-SSCEEEEEECSSCSSCCEEEE-EESSSSEEEEE
T ss_pred             cccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccC-CCceeeeEeecCCCCCcEEEE-EcCCCeEEEEe
Confidence               888999999999 655555   599999999999988887763 3434444555433 3445655 67899999988


Q ss_pred             cC-CcceEEEecCccceEEEEeCCCCC-EEEEEeCCCcEEEEEECCCCc-EEEEEec-------------CCCcccEEEE
Q 014977          204 FG-LNMIKLINAHDSHIACFTLTLDGL-LLATASTRGTLIRIFNTVDGT-RLQEVRR-------------GVDRAEIYSI  267 (415)
Q Consensus       204 ~~-~~~~~~~~~~~~~i~~l~~sp~g~-~l~s~s~dg~~I~vwd~~~~~-~~~~~~~-------------~~~~~~v~~l  267 (415)
                      .. .+.+..+..|...|.+++|+|++. +|++++.||. |++||++++. .+..+..             ..|...|.++
T Consensus       173 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  251 (408)
T 4a11_B          173 LKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSR-VKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGL  251 (408)
T ss_dssp             SSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSC-EEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEE
T ss_pred             CCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCc-EEEEECCCCCcccccccccccccceeeccccccccCceeEE
Confidence            76 456778889999999999999998 6999999999 9999998775 3434311             1267789999


Q ss_pred             EeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccc
Q 014977          268 ALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFS  347 (415)
Q Consensus       268 ~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (415)
                      +|+|++++|++++.||.|++||+.+++.......+.............          ..+....-.+..... .-.+|+
T Consensus       252 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~-~i~v~d  320 (408)
T 4a11_B          252 CFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTV----------SCGCSSEFVFVPYGS-TIAVYT  320 (408)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEE----------CCSSSSCEEEEEETT-EEEEEE
T ss_pred             EEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEE----------ecCCCceEEEEecCC-EEEEEE
Confidence            999999999999999999999999887643222110000000000000          000000000000000 001111


Q ss_pred             --cccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977          348 --SEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       348 --~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~  389 (415)
                        .......+..+...+..++|+++ ..|++++.||.|++|++..
T Consensus       321 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~  365 (408)
T 4a11_B          321 VYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSL  365 (408)
T ss_dssp             TTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC
T ss_pred             CcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCC
Confidence              12233344445567788999998 7788888899999999986

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.96  E-value=1.4e-28  Score=235.38  Aligned_cols=245  Identities=11%  Similarity=0.062  Sum_probs=185.4

Q ss_pred             cCCCCCCceEEEEEeC-CCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977           39 FSDVDEIELISVSWNQ-DYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp-~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i  116 (415)
                      ...+|.+.|++|+|+| ++.+|++|+ |+.|+|||+++.........+.....+.++.|++++.++++++.|     +.|
T Consensus       159 ~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d-----g~i  233 (435)
T 4e54_B          159 KGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNV-----GNV  233 (435)
T ss_dssp             CCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSS-----SBE
T ss_pred             EccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCC-----CcE
Confidence            3468999999999998 688999999 999999999875433333333455667889999999999999988     999


Q ss_pred             EEEECCCCCEEEEEE-ccCceeEEEEcCCeE-EEE---eCCeEEEEEcCCceeeeEE---eccCCCcceEEEecCCCceE
Q 014977          117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRI-VVV---LEHKIYVYSFVDLKLLHQI---ETLANLRGLCCLSHHSSTSV  188 (415)
Q Consensus       117 ~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~-~~~---~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  188 (415)
                      ++||+.. +.+..+. |...|.+++|+|++. +++   .|+.|++||+++.+....+   ..|..  .+.++.+++++.+
T Consensus       234 ~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~--~v~~~~~spdg~~  310 (435)
T 4e54_B          234 ILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRH--PVNAACFSPDGAR  310 (435)
T ss_dssp             EEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSS--CEEECCBCTTSSE
T ss_pred             eeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccc--cccceeECCCCCe
Confidence            9999864 4455555 899999999999875 444   5899999999876654433   34554  5667778888888


Q ss_pred             EEEeCCccCeEEEEEcCC-cceEEEecCcc------ceEEEEeCCCCCEEEEEe------------CCCcEEEEEECCCC
Q 014977          189 LACPGLQRGQVRIEHFGL-NMIKLINAHDS------HIACFTLTLDGLLLATAS------------TRGTLIRIFNTVDG  249 (415)
Q Consensus       189 l~~~g~~dg~v~i~~~~~-~~~~~~~~~~~------~i~~l~~sp~g~~l~s~s------------~dg~~I~vwd~~~~  249 (415)
                      |++ ++.||.|++|+... .....+..|..      .+....|+|++.+++++.            .++. |++||..++
T Consensus       311 l~s-~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-i~iwd~~~g  388 (435)
T 4e54_B          311 LLT-TDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRT-IDVFDGNSG  388 (435)
T ss_dssp             EEE-EESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCC-EEEECSSSC
T ss_pred             eEE-EcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCE-EEEEECCCC
Confidence            876 66899999998764 44555554432      233456777777666654            2356 999999999


Q ss_pred             cEEEEEecCCCcccEEEE-EeCCCCCEEEEEeCCCeEEEEEceeccc
Q 014977          250 TRLQEVRRGVDRAEIYSI-ALSPNVQWLAVASDKGTVHIFSLRVRVV  295 (415)
Q Consensus       250 ~~~~~~~~~~~~~~v~~l-~~spdg~~l~s~s~dg~i~vwd~~~~~~  295 (415)
                      +.+..+..+ |...|.++ +|+|+|++|++|+ |++|+||++++++.
T Consensus       389 ~~~~~l~~~-~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~  433 (435)
T 4e54_B          389 KMMCQLYDP-ESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEART  433 (435)
T ss_dssp             CEEEEECCS-SCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred             cEEEEEeCC-CCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence            999888654 66778877 6999999999876 78999999998874

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.96  E-value=2e-27  Score=221.09  Aligned_cols=245  Identities=13%  Similarity=0.109  Sum_probs=199.4

Q ss_pred             ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEee--eCCeEEEEecCCCCCCCCC
Q 014977           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLF--RCNILALVGAGDNSQYPPT  114 (415)
Q Consensus        38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~s~~~d~~~~~~  114 (415)
                      ....+|...|.+++|+|++++|++++ |+.|++||+++.+....   ..+...+.++.|  ++++..+++++.|     +
T Consensus        80 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~~~~~d-----g  151 (368)
T 3mmy_A           80 KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQI---AQHDAPVKTIHWIKAPNYSCVMTGSWD-----K  151 (368)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE---EECSSCEEEEEEEECSSCEEEEEEETT-----S
T ss_pred             EEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceee---ccccCceEEEEEEeCCCCCEEEEccCC-----C
Confidence            34567999999999999999999999 99999999998654432   267778888888  8999999999988     9


Q ss_pred             eEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEe--ccCCCcceEEEecCCCc--eEE
Q 014977          115 KVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIE--TLANLRGLCCLSHHSST--SVL  189 (415)
Q Consensus       115 ~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~l  189 (415)
                      .|++||+.+++.+..+.....+.++.+.++..+++ .++.+++|++..........  ..........+.+....  ..+
T Consensus       152 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (368)
T 3mmy_A          152 TLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGF  231 (368)
T ss_dssp             EEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEE
T ss_pred             cEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeE
Confidence            99999999999999999778889999988866666 79999999997754433322  22233345555554432  225


Q ss_pred             EEeCCccCeEEEEEcCC----cceEEEecCcc------------ceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEE
Q 014977          190 ACPGLQRGQVRIEHFGL----NMIKLINAHDS------------HIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQ  253 (415)
Q Consensus       190 ~~~g~~dg~v~i~~~~~----~~~~~~~~~~~------------~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~  253 (415)
                      ++ ++.||.|++|+...    ..+..+..|..            .|.+++|+|++++|++++.||. |++||+.+++.+.
T Consensus       232 ~~-~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~-i~iwd~~~~~~~~  309 (368)
T 3mmy_A          232 AL-GSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGR-FSFWDKDARTKLK  309 (368)
T ss_dssp             EE-EETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSC-EEEEETTTTEEEE
T ss_pred             EE-ecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCe-EEEEECCCCcEEE
Confidence            44 67899999999876    45677778876            7999999999999999999999 9999999999999


Q ss_pred             EEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977          254 EVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (415)
Q Consensus       254 ~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  294 (415)
                      .+..  |...|.+++|+|+|++|++++.|+..+.|++...+
T Consensus       310 ~~~~--~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~~  348 (368)
T 3mmy_A          310 TSEQ--LDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQ  348 (368)
T ss_dssp             ECCC--CSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCTT
T ss_pred             EecC--CCCCceEEEECCCCCeEEEEecccccccccccCCC
Confidence            9887  78899999999999999999999876666655444

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.96  E-value=1.7e-26  Score=212.74  Aligned_cols=286  Identities=12%  Similarity=0.124  Sum_probs=193.8

Q ss_pred             ccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCC----CEEEEEE-ccCceeEEEEcC--CeEEEE---eCC
Q 014977           83 LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQS----RCIGEFA-FRSDVRSVKLSR--DRIVVV---LEH  152 (415)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~----~~~~~~~-~~~~i~~l~~~~--~~~~~~---~d~  152 (415)
                      +.+|...|.++.|++++.++++++.|     +.|++||+.++    +.+..+. |...|.+++|+|  ++.+++   .|+
T Consensus         7 ~~gH~~~v~~~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg   81 (351)
T 3f3f_A            7 DSGHDDLVHDVVYDFYGRHVATCSSD-----QHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDK   81 (351)
T ss_dssp             ECCCSSCEEEEEECSSSSEEEEEETT-----SEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred             CcccccceeEEEEcCCCCEEEEeeCC-----CeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCC
Confidence            34788899999999999999999988     99999999876    3555555 899999999999  476666   699


Q ss_pred             eEEEEEcCCc---------eeeeEEeccCCCcceEEEecCCC--ceEEEEeCCccCeEEEEEcCCc-ceEEE--------
Q 014977          153 KIYVYSFVDL---------KLLHQIETLANLRGLCCLSHHSS--TSVLACPGLQRGQVRIEHFGLN-MIKLI--------  212 (415)
Q Consensus       153 ~i~iwd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~g~~dg~v~i~~~~~~-~~~~~--------  212 (415)
                      .|++||+.++         +.+..+..|...  +.++.++++  +.++++ ++.||.|++|+.... .+..+        
T Consensus        82 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~l~~-~~~dg~v~iwd~~~~~~~~~~~~~~~~~~  158 (351)
T 3f3f_A           82 TVKLWEEDPDQEECSGRRWNKLCTLNDSKGS--LYSVKFAPAHLGLKLAC-LGNDGILRLYDALEPSDLRSWTLTSEMKV  158 (351)
T ss_dssp             CEEEEEECTTSCTTSSCSEEEEEEECCCSSC--EEEEEECCGGGCSEEEE-EETTCEEEEEECSSTTCTTCCEEEEEEES
T ss_pred             eEEEEecCCCcccccccCcceeeeecccCCc--eeEEEEcCCCCCcEEEE-ecCCCcEEEecCCChHHhccccccccccc
Confidence            9999999876         556677777764  445555555  677776 668999999986542 22211        


Q ss_pred             -----ecCccceEEEEeCCC---CCEEEEEeCCCcEEEEEECCCCcE--EEEEecCCCcccEEEEEeCCCC----CEEEE
Q 014977          213 -----NAHDSHIACFTLTLD---GLLLATASTRGTLIRIFNTVDGTR--LQEVRRGVDRAEIYSIALSPNV----QWLAV  278 (415)
Q Consensus       213 -----~~~~~~i~~l~~sp~---g~~l~s~s~dg~~I~vwd~~~~~~--~~~~~~~~~~~~v~~l~~spdg----~~l~s  278 (415)
                           ..|...+.+++|+|+   +.+|++++.++. +.+|+...++.  +..+..  |...|.+++|+|++    ++|++
T Consensus       159 ~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~--h~~~i~~~~~~p~~~~~~~~l~s  235 (351)
T 3f3f_A          159 LSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQA-IIYQRGKDGKLHVAAKLPG--HKSLIRSISWAPSIGRWYQLIAT  235 (351)
T ss_dssp             CSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEE-EEEEECTTSCEEEEEECCC--CCSCEEEEEECCCSSCSSEEEEE
T ss_pred             cccccCCcccceeEEEeccCCCCCcEEEEecCCCc-EEEEccCCCceeeeeecCC--CCcceeEEEECCCCCCcceEEEE
Confidence                 157788999999997   899999999999 98888877765  445555  88899999999998    89999


Q ss_pred             EeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCccccc--ccceEEEE
Q 014977          279 ASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSS--EWSFAQFH  356 (415)
Q Consensus       279 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  356 (415)
                      ++.||.|++||++++...........    .......+.............+..        .....+..  ......++
T Consensus       236 ~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~  303 (351)
T 3f3f_A          236 GCKDGRIRIFKITEKLSPLASEESLT----NSNMFDNSADVDMDAQGRSDSNTE--------EKAELQSNLQVELLSEHD  303 (351)
T ss_dssp             EETTSCEEEEEEEECC---------------------------------------------------CCSEEEEEEEEEC
T ss_pred             EcCCCeEEEEeCCCCcCccccCCccc----ceeccCCCcccccccccccccccc--------eeeeecccccccEEEEEe
Confidence            99999999999998764332111100    000000000000000000000000        00001110  11122233


Q ss_pred             eCCCceEEEEecCC-CEEEEEEeCCcEEEEEEecCC
Q 014977          357 IPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDPVH  391 (415)
Q Consensus       357 ~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~~~  391 (415)
                      -....+..++|+++ +.|++++.||.|++|++...+
T Consensus       304 ~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  339 (351)
T 3f3f_A          304 DHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSN  339 (351)
T ss_dssp             TTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred             cccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCc
Confidence            34467888999998 668888889999999998743

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.96  E-value=2.6e-27  Score=218.44  Aligned_cols=230  Identities=13%  Similarity=0.101  Sum_probs=190.0

Q ss_pred             CCCCCCceEEEEEeCCCC-EEEEEe-CCcEEEEEc-cCCceeEEEeccC--CCeeEEEEeeeCCeEEEEecCCCCCCCCC
Q 014977           40 SDVDEIELISVSWNQDYG-CFAAGT-SCGFRIYNC-EPFKETFRRDLKS--GGFRIVEMLFRCNILALVGAGDNSQYPPT  114 (415)
Q Consensus        40 ~~~h~~~V~~l~~sp~g~-~la~g~-d~~v~iw~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~s~~~d~~~~~~  114 (415)
                      ..+|...|.+++|+|+++ +|++|+ |+.|++|++ ++...   ..+..  +...+.++.|++ +..+++++.|     +
T Consensus        52 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~---~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d-----~  122 (342)
T 1yfq_A           52 SLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF---QALTNNEANLGICRICKYG-DDKLIAASWD-----G  122 (342)
T ss_dssp             EEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE---EECBSCCCCSCEEEEEEET-TTEEEEEETT-----S
T ss_pred             eeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce---EeccccCCCCceEEEEeCC-CCEEEEEcCC-----C
Confidence            457999999999999999 999999 999999999 76543   23446  888999999999 7778888877     9


Q ss_pred             eEEEEECCC---------CCEEEEEEccCceeEEEEcCCeEEEE-eCCeEEEEEcCC-ceeeeEEeccCCCcceEEEecC
Q 014977          115 KVIIWDDHQ---------SRCIGEFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFVD-LKLLHQIETLANLRGLCCLSHH  183 (415)
Q Consensus       115 ~i~vwd~~~---------~~~~~~~~~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~  183 (415)
                      .|++||+.+         ++++..+.+...|.+++|++++.+++ .++.|++||+.+ +..............+.++.++
T Consensus       123 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~  202 (342)
T 1yfq_A          123 LIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALL  202 (342)
T ss_dssp             EEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEEC
T ss_pred             eEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEEC
Confidence            999999887         77666667889999999999993333 789999999987 5543222222222356677777


Q ss_pred             C-CceEEEEeCCccCeEEEEEcCC-------cceEEEecCcc---------ceEEEEeCCCCCEEEEEeCCCcEEEEEEC
Q 014977          184 S-STSVLACPGLQRGQVRIEHFGL-------NMIKLINAHDS---------HIACFTLTLDGLLLATASTRGTLIRIFNT  246 (415)
Q Consensus       184 ~-~~~~l~~~g~~dg~v~i~~~~~-------~~~~~~~~~~~---------~i~~l~~sp~g~~l~s~s~dg~~I~vwd~  246 (415)
                      + ++.++++ ++.||.|++|+.+.       .....+..|..         .|.+++|+|++++|++++.||. |++||+
T Consensus       203 ~~~~~~l~~-~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~vwd~  280 (342)
T 1yfq_A          203 PKEQEGYAC-SSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI-ISCWNL  280 (342)
T ss_dssp             SGGGCEEEE-EETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSC-EEEEET
T ss_pred             CCCCCEEEE-EecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCce-EEEEcC
Confidence            7 7777776 66899999988754       55677888765         9999999999999999999999 999999


Q ss_pred             CCCcEEEEEecCCC-cccEEEEEeCCCCCEEEEEeCCCe
Q 014977          247 VDGTRLQEVRRGVD-RAEIYSIALSPNVQWLAVASDKGT  284 (415)
Q Consensus       247 ~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~s~s~dg~  284 (415)
                      .+++.+..+..  | ...|.+++  |++++|++++.||.
T Consensus       281 ~~~~~~~~~~~--~h~~~v~~~~--~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          281 QTRKKIKNFAK--FNEDSVVKIA--CSDNILCLATSDDT  315 (342)
T ss_dssp             TTTEEEEECCC--CSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred             ccHhHhhhhhc--ccCCCceEec--CCCCeEEEEecCCc
Confidence            99999988887  5 88999999  99999999999997

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.96  E-value=9.5e-27  Score=222.25  Aligned_cols=252  Identities=11%  Similarity=0.135  Sum_probs=188.9

Q ss_pred             CCCeeEEEEeeeCC-eEEEEecCCCCCCCCCeEEEEECCC----------CCEEEEEE-ccCceeEEEEcCCeE-EEE--
Q 014977           85 SGGFRIVEMLFRCN-ILALVGAGDNSQYPPTKVIIWDDHQ----------SRCIGEFA-FRSDVRSVKLSRDRI-VVV--  149 (415)
Q Consensus        85 ~~~~~~~~~~~~~~-~~~l~s~~~d~~~~~~~i~vwd~~~----------~~~~~~~~-~~~~i~~l~~~~~~~-~~~--  149 (415)
                      .|...+.++.|+++ ..++++++.+     |.|++||+.+          .+.+..+. |...|.+++|+|++. +++  
T Consensus       126 ~h~~~v~~l~~~p~~~~~lat~~~d-----g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  200 (430)
T 2xyi_A          126 NHEGEVNRARYMPQNACVIATKTPS-----SDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA  200 (430)
T ss_dssp             EESSCCSEEEEETTEEEEEEEECSS-----SCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred             cCCCcEEEEEECCCCCcEEEEECCC-----CcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence            56777888999997 6788888887     9999999876          56666666 899999999999876 555  


Q ss_pred             -eCCeEEEEEcCCcee-------eeEEeccCCCcceEEEecCC-CceEEEEeCCccCeEEEEEcCC----cceEEEecCc
Q 014977          150 -LEHKIYVYSFVDLKL-------LHQIETLANLRGLCCLSHHS-STSVLACPGLQRGQVRIEHFGL----NMIKLINAHD  216 (415)
Q Consensus       150 -~d~~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~l~~~g~~dg~v~i~~~~~----~~~~~~~~~~  216 (415)
                       .||.|++||+.++..       ...+..|...  +.++.+++ ++.++++ ++.|+.|++|+.+.    ..+..+..|.
T Consensus       201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~--v~~v~~~p~~~~~l~s-~~~dg~i~i~d~~~~~~~~~~~~~~~~~  277 (430)
T 2xyi_A          201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAV--VEDVAWHLLHESLFGS-VADDQKLMIWDTRNNNTSKPSHTVDAHT  277 (430)
T ss_dssp             CTTSCEEEEETTSCCBGGGEEECSEEECCCSSC--EEEEEECSSCTTEEEE-EETTSEEEEEETTCSCSSSCSEEEECCS
T ss_pred             eCCCeEEEEeCCCCCCCCceeccceeecCCCCC--EeeeEEeCCCCCEEEE-EeCCCeEEEEECCCCCCCcceeEeecCC
Confidence             689999999987322       3445566664  44455555 3445554 66899999999875    3677788999


Q ss_pred             cceEEEEeCCCCC-EEEEEeCCCcEEEEEECCC-CcEEEEEecCCCcccEEEEEeCCCCC-EEEEEeCCCeEEEEEceec
Q 014977          217 SHIACFTLTLDGL-LLATASTRGTLIRIFNTVD-GTRLQEVRRGVDRAEIYSIALSPNVQ-WLAVASDKGTVHIFSLRVR  293 (415)
Q Consensus       217 ~~i~~l~~sp~g~-~l~s~s~dg~~I~vwd~~~-~~~~~~~~~~~~~~~v~~l~~spdg~-~l~s~s~dg~i~vwd~~~~  293 (415)
                      ..|++++|+|++. +|++|+.||. |++||+++ +..+..+..  |...|.+++|+|+++ +|++++.||.|+|||+...
T Consensus       278 ~~v~~i~~~p~~~~~l~tg~~dg~-v~vwd~~~~~~~~~~~~~--h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~  354 (430)
T 2xyi_A          278 AEVNCLSFNPYSEFILATGSADKT-VALWDLRNLKLKLHSFES--HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI  354 (430)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSE-EEEEETTCTTSCSEEEEC--CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGT
T ss_pred             CCeEEEEeCCCCCCEEEEEeCCCe-EEEEeCCCCCCCeEEeec--CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Confidence            9999999999987 7899999999 99999998 566778887  788999999999985 6899999999999999885


Q ss_pred             ccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC-C-
Q 014977          294 VVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-N-  371 (415)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-  371 (415)
                      ........                                    .....+.      .+..+......+..++|+++ . 
T Consensus       355 ~~~~~~~~------------------------------------~~~~~~~------~~~~~~~h~~~v~~~~~~p~~~~  392 (430)
T 2xyi_A          355 GEEQSTED------------------------------------AEDGPPE------LLFIHGGHTAKISDFSWNPNEPW  392 (430)
T ss_dssp             TCCCCHHH------------------------------------HHHCCTT------EEEECCCCSSCEEEEEECSSSTT
T ss_pred             ccccCccc------------------------------------cccCCcc------eEEEcCCCCCCceEEEECCCCCC
Confidence            43210000                                    0000000      00111112345677899998 3 


Q ss_pred             EEEEEEeCCcEEEEEEec
Q 014977          372 TVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       372 ~i~~~~~dg~~~~~~~~~  389 (415)
                      .+++++.||.|++|+++.
T Consensus       393 ~l~s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          393 IICSVSEDNIMQVWQMAE  410 (430)
T ss_dssp             EEEEEETTSEEEEEEECH
T ss_pred             EEEEEECCCCEEEeEccc
Confidence            677788899999999975

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=7.4e-26  Score=212.96  Aligned_cols=223  Identities=16%  Similarity=0.101  Sum_probs=179.6

Q ss_pred             CEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEE-EecCCCCCCCCCeEEEEECCCCCEEEEEEccC
Q 014977           57 GCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILAL-VGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRS  134 (415)
Q Consensus        57 ~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~  134 (415)
                      .++++++ ++.|++||+++.+......   +...+.++.|++++..+ ++++.+     +.|++||+.+++.+..+.+..
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~d-----~~i~v~d~~~~~~~~~~~~~~   74 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIP---VGSNPMGAVISPDGTKVYVANAHS-----NDVSIIDTATNNVIATVPAGS   74 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEE---CSSSEEEEEECTTSSEEEEEEGGG-----TEEEEEETTTTEEEEEEECSS
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEee---cCCCcceEEECCCCCEEEEECCCC-----CeEEEEECCCCeEEEEEECCC
Confidence            3566777 9999999999866544432   33457899999998654 666666     999999999999999998777


Q ss_pred             ceeEEEEcCCeEEEE----eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC-cce
Q 014977          135 DVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMI  209 (415)
Q Consensus       135 ~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~-~~~  209 (415)
                      .+.+++|+|++..++    .++.|++||+.+++.+..+..+.   .+..+.+++++..++++++.++.|++|+... +.+
T Consensus        75 ~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~  151 (391)
T 1l0q_A           75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK---SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVI  151 (391)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCC---CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence            999999999998765    46999999999999888777554   4566777777877766677899999998765 444


Q ss_pred             EEEecCccceEEEEeCCCCCEE-EEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEe---CCCeE
Q 014977          210 KLINAHDSHIACFTLTLDGLLL-ATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVAS---DKGTV  285 (415)
Q Consensus       210 ~~~~~~~~~i~~l~~sp~g~~l-~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s---~dg~i  285 (415)
                      ..+..+ ..+..++|+|+|++| ++++.++. |++||+++++.+..+.   +...+.+++|+|++++|++++   .++.|
T Consensus       152 ~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~-v~~~d~~~~~~~~~~~---~~~~~~~~~~~~~g~~l~~~~~~~~~~~v  226 (391)
T 1l0q_A          152 NTVSVG-RSPKGIAVTPDGTKVYVANFDSMS-ISVIDTVTNSVIDTVK---VEAAPSGIAVNPEGTKAYVTNVDKYFNTV  226 (391)
T ss_dssp             EEEECC-SSEEEEEECTTSSEEEEEETTTTE-EEEEETTTTEEEEEEE---CSSEEEEEEECTTSSEEEEEEECSSCCEE
T ss_pred             EEEecC-CCcceEEECCCCCEEEEEeCCCCE-EEEEECCCCeEEEEEe---cCCCccceEECCCCCEEEEEecCcCCCcE
Confidence            555544 566999999999987 56778888 9999999998887776   345789999999999999888   68999


Q ss_pred             EEEEceeccc
Q 014977          286 HIFSLRVRVV  295 (415)
Q Consensus       286 ~vwd~~~~~~  295 (415)
                      ++||+++++.
T Consensus       227 ~~~d~~~~~~  236 (391)
T 1l0q_A          227 SMIDTGTNKI  236 (391)
T ss_dssp             EEEETTTTEE
T ss_pred             EEEECCCCeE
Confidence            9999987753

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.96  E-value=6.9e-27  Score=218.24  Aligned_cols=279  Identities=12%  Similarity=0.071  Sum_probs=205.8

Q ss_pred             CCceEEEEEeCCCCEEEEEe-C-------CcEEEEEccCCce--------eEEEeccCCCeeEEEEeeeCCeEEEE----
Q 014977           44 EIELISVSWNQDYGCFAAGT-S-------CGFRIYNCEPFKE--------TFRRDLKSGGFRIVEMLFRCNILALV----  103 (415)
Q Consensus        44 ~~~V~~l~~sp~g~~la~g~-d-------~~v~iw~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~----  103 (415)
                      .-+|++++|+||+++|++|+ +       +.|++|+++....        .....+..+...+.++.++.+..+..    
T Consensus        14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~   93 (365)
T 4h5i_A           14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNEN   93 (365)
T ss_dssp             SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCC
T ss_pred             CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCC
Confidence            45799999999999999986 3       2499999975432        12234556777777887776644332    


Q ss_pred             -----ecCCCCCCCCCeEEEEECCCCCE-EEEEE---------ccCceeEEEEcCCeEEEE-----eCCeEEEEEcCCce
Q 014977          104 -----GAGDNSQYPPTKVIIWDDHQSRC-IGEFA---------FRSDVRSVKLSRDRIVVV-----LEHKIYVYSFVDLK  163 (415)
Q Consensus       104 -----s~~~d~~~~~~~i~vwd~~~~~~-~~~~~---------~~~~i~~l~~~~~~~~~~-----~d~~i~iwd~~~~~  163 (415)
                           +++.+     +.+++|++.+... +....         +...+..++|+|||++++     .|+.|+|||+.+++
T Consensus        94 ~~~l~s~~~d-----~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~  168 (365)
T 4h5i_A           94 STKITQGKGN-----KHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLT  168 (365)
T ss_dssp             HHHHHHTSCC-----CCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTE
T ss_pred             ccEEEEecCC-----CcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCc
Confidence                 23334     8999999766532 22221         234588999999998865     47999999999999


Q ss_pred             eeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEE--EecCccceEEEEeCCCCCEEEEEeCCC---
Q 014977          164 LLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKL--INAHDSHIACFTLTLDGLLLATASTRG---  238 (415)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~--~~~~~~~i~~l~~sp~g~~l~s~s~dg---  238 (415)
                      .+..+. +..  .+.+++++|++.++++ ++.++.+.+|...+..+..  ...|...|.+++|+|+|+++++++.|+   
T Consensus       169 ~~~~~~-~~~--~V~~v~fspdg~~l~s-~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~  244 (365)
T 4h5i_A          169 EKFEIE-TRG--EVKDLHFSTDGKVVAY-ITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKG  244 (365)
T ss_dssp             EEEEEE-CSS--CCCEEEECTTSSEEEE-ECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCC
T ss_pred             EEEEeC-CCC--ceEEEEEccCCceEEe-ccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcce
Confidence            988886 444  3556666778888876 5555554446666655433  356888999999999999999999887   


Q ss_pred             -cEEEEEECCCCcE----EEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccc
Q 014977          239 -TLIRIFNTVDGTR----LQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELL  313 (415)
Q Consensus       239 -~~I~vwd~~~~~~----~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  313 (415)
                       . +++||+..+..    ...+..  |...|++++|+|||++||+|+.|++|+|||+++++...+..             
T Consensus       245 ~~-i~~~~~~~~~~~~~~~~~~~~--~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~-------------  308 (365)
T 4h5i_A          245 IV-LTKISIKSGNTSVLRSKQVTN--RFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFK-------------  308 (365)
T ss_dssp             EE-EEEEEEETTEEEEEEEEEEES--SCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEET-------------
T ss_pred             eE-EeecccccceecceeeeeecC--CCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEec-------------
Confidence             5 88899877653    234555  77899999999999999999999999999999887432100             


Q ss_pred             cCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977          314 NHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~  389 (415)
                                                                +.....+..++|+|+ ..|++++.||+|+||.++.
T Consensus       309 ------------------------------------------~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          309 ------------------------------------------QAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             ------------------------------------------TSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred             ------------------------------------------CcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence                                                      112356778999999 6677788899999999975

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.95  E-value=8.7e-27  Score=222.85  Aligned_cols=235  Identities=13%  Similarity=0.269  Sum_probs=188.8

Q ss_pred             cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~  117 (415)
                      ...+|...|.+++|  ++++|++|+ ||.|++||+++.+....  +..|...+.++.|+++  .+++++.|     +.|+
T Consensus       168 ~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~--~l~s~s~d-----g~i~  236 (435)
T 1p22_A          168 ILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNT--LIHHCEAVLHLRFNNG--MMVTCSKD-----RSIA  236 (435)
T ss_dssp             EECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEE--ECCCCSCEEEEECCTT--EEEEEETT-----SCEE
T ss_pred             EEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEE--EcCCCCcEEEEEEcCC--EEEEeeCC-----CcEE
Confidence            35689999999999  788999999 99999999998765444  4478888999999865  56677776     9999


Q ss_pred             EEECCCCCEE---EEEE-ccCceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEe
Q 014977          118 IWDDHQSRCI---GEFA-FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP  192 (415)
Q Consensus       118 vwd~~~~~~~---~~~~-~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  192 (415)
                      +||+.+++.+   ..+. |...|.++++..+....+ .|+.|++||+.+++.+..+..|...+  .++.+++  .++++ 
T Consensus       237 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v--~~~~~~~--~~l~~-  311 (435)
T 1p22_A          237 VWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI--ACLQYRD--RLVVS-  311 (435)
T ss_dssp             EEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCE--EEEEEET--TEEEE-
T ss_pred             EEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcE--EEEEeCC--CEEEE-
Confidence            9999888755   3333 889999999954433333 69999999999999999998887744  4555543  45655 


Q ss_pred             CCccCeEEEEEcC-CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCc---------EEEEEecCCCcc
Q 014977          193 GLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT---------RLQEVRRGVDRA  262 (415)
Q Consensus       193 g~~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~---------~~~~~~~~~~~~  262 (415)
                      |+.||.|++|+.. ++.+..+.+|...|.+++|  ++.+|++|+.||. |++||+.+++         .+..+..  |.+
T Consensus       312 g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~--h~~  386 (435)
T 1p22_A          312 GSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGK-IKVWDLVAALDPRAPAGTLCLRTLVE--HSG  386 (435)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSC-EEEEEHHHHTSTTSCTTTTEEEEECC--CSS
T ss_pred             EeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCc-EEEEECCCCCCccccccchheeeccC--CCC
Confidence            6789999999876 5678889999999999999  7889999999999 9999997766         7888877  888


Q ss_pred             cEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977          263 EIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       263 ~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                      .|.+++|  ++.+|++++.||+|++||+.++...
T Consensus       387 ~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~  418 (435)
T 1p22_A          387 RVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAA  418 (435)
T ss_dssp             CCCCEEE--CSSCEEECCSSSEEEEEC-------
T ss_pred             CeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCc
Confidence            9999999  7889999999999999999987654

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.95  E-value=2.5e-28  Score=232.90  Aligned_cols=226  Identities=12%  Similarity=0.062  Sum_probs=177.6

Q ss_pred             cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~  117 (415)
                      ...+-...|.+++|+|||+++|+++ |++|+  +....+.     +.+|...+..+.|+|++       .+     +.+.
T Consensus        10 ~~~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~-----l~gh~~~v~~V~FsPdg-------~~-----~~~~   70 (588)
T 2j04_A           10 DRKEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKD-----INCNSKNLFHVKEFPLE-------FE-----NKLD   70 (588)
T ss_dssp             CSCCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSC-----CSSBGGGTEEEEEECCC-------CC-----CTTT
T ss_pred             cHhHhhccEEEEEECCCCCEEEEEcCCceee--cccccce-----ecCCCccEEEEEECCCC-------Cc-----ceEE
Confidence            3456678899999999999999999 99999  6544332     34788999999999988       23     6666


Q ss_pred             EEECCCCCEEEEEEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCC---CcceEEEecCCCceEEEE
Q 014977          118 IWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLAN---LRGLCCLSHHSSTSVLAC  191 (415)
Q Consensus       118 vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~  191 (415)
                      +|+.+ +..+..+.+...|.+++|+|+|..++   .||.|++||.+.  ++..+. |..   ...+.+++++|++++|++
T Consensus        71 ~~~~~-~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAs  146 (588)
T 2j04_A           71 FELAQ-QNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVV  146 (588)
T ss_dssp             TSCCC-SSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEE
T ss_pred             EEeCC-CceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEE
Confidence            77643 22233334678999999999999888   699999999543  555555 443   124678888888999987


Q ss_pred             eCCccCeEEEEEcCCcc--------eEEE----ecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcE---EEEEe
Q 014977          192 PGLQRGQVRIEHFGLNM--------IKLI----NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR---LQEVR  256 (415)
Q Consensus       192 ~g~~dg~v~i~~~~~~~--------~~~~----~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~---~~~~~  256 (415)
                       |+.||+|+||+.....        +..+    .+|...|.+++|+|+|  |++++.|+. |++||+..++.   ..++.
T Consensus       147 -gs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~t-VrlWd~~~~~~~~~~~tL~  222 (588)
T 2j04_A          147 -GNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNS-VFSMTVSASSHQPVSRMIQ  222 (588)
T ss_dssp             -EETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCC-EEEECCCSSSSCCCEEEEE
T ss_pred             -EcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCe-EEEEECCCCccccceeeec
Confidence             6689999999988764        4666    5677899999999999  788899999 99999988773   35664


Q ss_pred             cCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceeccc
Q 014977          257 RGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV  295 (415)
Q Consensus       257 ~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~  295 (415)
                      .+ |...|.+++|+  |+.||+++ +++|++||+.+++.
T Consensus       223 ~~-h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~  257 (588)
T 2j04_A          223 NA-SRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSI  257 (588)
T ss_dssp             CC-CSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEE
T ss_pred             cc-ccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeE
Confidence            32 67789999999  68999887 69999999998764

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.95  E-value=3.2e-25  Score=208.59  Aligned_cols=238  Identities=10%  Similarity=0.035  Sum_probs=194.3

Q ss_pred             CCceEEEEEeCCCCEE-EEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEE-EecCCCCCCCCCeEEEEE
Q 014977           44 EIELISVSWNQDYGCF-AAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILAL-VGAGDNSQYPPTKVIIWD  120 (415)
Q Consensus        44 ~~~V~~l~~sp~g~~l-a~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~~~~~~i~vwd  120 (415)
                      ...+.+++|+|++++| ++++ ++.|++||+.+.+......  . ...+.++.|++++..+ +++..+     +.|++||
T Consensus        31 ~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~--~-~~~v~~~~~spdg~~l~~~~~~~-----~~v~v~d  102 (391)
T 1l0q_A           31 GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP--A-GSSPQGVAVSPDGKQVYVTNMAS-----STLSVID  102 (391)
T ss_dssp             SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE--C-SSSEEEEEECTTSSEEEEEETTT-----TEEEEEE
T ss_pred             CCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEE--C-CCCccceEECCCCCEEEEEECCC-----CEEEEEE
Confidence            3458999999999987 5665 9999999998866554433  2 2378899999988655 555555     9999999


Q ss_pred             CCCCCEEEEEEccCceeEEEEcCCeEEEE----eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCcc
Q 014977          121 DHQSRCIGEFAFRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR  196 (415)
Q Consensus       121 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  196 (415)
                      +.+++.+..+.+...+.+++|+|++..++    .++.|++||+.+++.+..+..+..   ...+.+++++..+++++..+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~---~~~~~~~~dg~~l~~~~~~~  179 (391)
T 1l0q_A          103 TTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRS---PKGIAVTPDGTKVYVANFDS  179 (391)
T ss_dssp             TTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSS---EEEEEECTTSSEEEEEETTT
T ss_pred             CCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCC---cceEEECCCCCEEEEEeCCC
Confidence            99999999888878899999999988663    589999999999998888876543   45666777777776667789


Q ss_pred             CeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEe---CCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCC
Q 014977          197 GQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATAS---TRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNV  273 (415)
Q Consensus       197 g~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s---~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg  273 (415)
                      +.|++|+...........+...+.+++|+|+|++|++++   .++. |++||+.+++.+..+..  + ..+.+++|+|++
T Consensus       180 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~-v~~~d~~~~~~~~~~~~--~-~~~~~~~~s~dg  255 (391)
T 1l0q_A          180 MSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNT-VSMIDTGTNKITARIPV--G-PDPAGIAVTPDG  255 (391)
T ss_dssp             TEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCE-EEEEETTTTEEEEEEEC--C-SSEEEEEECTTS
T ss_pred             CEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCc-EEEEECCCCeEEEEEec--C-CCccEEEEccCC
Confidence            999999987765555555677899999999999998888   6888 99999999999888886  3 357899999999


Q ss_pred             CEE-EEEeCCCeEEEEEceecccC
Q 014977          274 QWL-AVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       274 ~~l-~s~s~dg~i~vwd~~~~~~~  296 (415)
                      ++| ++++.|+.|++||+.+++..
T Consensus       256 ~~l~~s~~~d~~v~v~d~~~~~~~  279 (391)
T 1l0q_A          256 KKVYVALSFXNTVSVIDTATNTIT  279 (391)
T ss_dssp             SEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CEEEEEcCCCCEEEEEECCCCcEE
Confidence            987 56788999999999987754

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.95  E-value=1.3e-26  Score=221.88  Aligned_cols=199  Identities=11%  Similarity=0.149  Sum_probs=157.4

Q ss_pred             CCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCC-----------EEEEEE-cc------------CceeEEE
Q 014977           85 SGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR-----------CIGEFA-FR------------SDVRSVK  140 (415)
Q Consensus        85 ~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~-----------~~~~~~-~~------------~~i~~l~  140 (415)
                      .+...|.++.|++++.+|++++.|     +.|++||+.+++           .+..+. |.            ..|.+++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~d-----g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~  100 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKG-----GRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIR  100 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETT-----SEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEE
T ss_pred             cccCcEEEEEECCCCCEEEEEcCC-----CeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEE
Confidence            346789999999999999999988     999999998876           466666 76            8899999


Q ss_pred             EcCCe--EEEE---eCCeEEEEEcCCceee---------------------------------------eE-EeccCCCc
Q 014977          141 LSRDR--IVVV---LEHKIYVYSFVDLKLL---------------------------------------HQ-IETLANLR  175 (415)
Q Consensus       141 ~~~~~--~~~~---~d~~i~iwd~~~~~~~---------------------------------------~~-~~~~~~~~  175 (415)
                      |+|++  ..++   .|+.|++||+.+++..                                       .. ...|..  
T Consensus       101 ~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--  178 (447)
T 3dw8_B          101 WLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTY--  178 (447)
T ss_dssp             ECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSS--
T ss_pred             EcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCc--
Confidence            99997  4444   7999999998764432                                       11 234555  


Q ss_pred             ceEEEecCCCceEEEEeCCccCeEEEEEcC-Cc-ceE-------EEecCccceEEEEeCCCC-CEEEEEeCCCcEEEEEE
Q 014977          176 GLCCLSHHSSTSVLACPGLQRGQVRIEHFG-LN-MIK-------LINAHDSHIACFTLTLDG-LLLATASTRGTLIRIFN  245 (415)
Q Consensus       176 ~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~-~~-~~~-------~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~~I~vwd  245 (415)
                      .+.++.+++++.+|++ | .|+.|++|+.. .. .+.       .+..|...|.+++|+|++ ++|++++.||. |++||
T Consensus       179 ~v~~~~~~~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~-i~iwd  255 (447)
T 3dw8_B          179 HINSISINSDYETYLS-A-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGT-IRLCD  255 (447)
T ss_dssp             CCCEEEECTTSSEEEE-E-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSC-EEEEE
T ss_pred             ceEEEEEcCCCCEEEE-e-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCe-EEEEE
Confidence            4455556667778876 5 69999999987 32 233       245789999999999998 99999999999 99999


Q ss_pred             CCCCcE----EEEEecCCCcc------------cEEEEEeCCCCCEEEEEeCCCeEEEEEcee-cccC
Q 014977          246 TVDGTR----LQEVRRGVDRA------------EIYSIALSPNVQWLAVASDKGTVHIFSLRV-RVVG  296 (415)
Q Consensus       246 ~~~~~~----~~~~~~~~~~~------------~v~~l~~spdg~~l~s~s~dg~i~vwd~~~-~~~~  296 (415)
                      +++++.    +..+..  |..            .|.+++|+|+|++|++++. +.|+|||+++ ++..
T Consensus       256 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~  320 (447)
T 3dw8_B          256 MRASALCDRHSKLFEE--PEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPV  320 (447)
T ss_dssp             TTTCSSSCTTCEEECC--C-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCS
T ss_pred             CcCCccccceeeEecc--CCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcccc
Confidence            999886    677776  444            8999999999999999999 9999999987 5433

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.95  E-value=1.5e-26  Score=218.30  Aligned_cols=240  Identities=13%  Similarity=-0.006  Sum_probs=162.3

Q ss_pred             CCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEE---EeccCCCeeEEEEeeeC--------CeEEEEecCCCC
Q 014977           42 VDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFR---RDLKSGGFRIVEMLFRC--------NILALVGAGDNS  109 (415)
Q Consensus        42 ~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~---~~~~~~~~~~~~~~~~~--------~~~~l~s~~~d~  109 (415)
                      .|...+....+++++.+||+++ |++|+||+.++.+....   ..+.+|...|.++.|+|        ++.+|++++.| 
T Consensus        87 ~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D-  165 (393)
T 4gq1_A           87 LHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD-  165 (393)
T ss_dssp             ----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT-
T ss_pred             ccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECC-
Confidence            3444455555566777899999 99999999987654332   23568899999999987        78999999998 


Q ss_pred             CCCCCeEEEEECCCCCEEEEE-EccCceeEEEEcCCeE-EEE---eCCeEEEEEcCCceeeeEEe---------------
Q 014977          110 QYPPTKVIIWDDHQSRCIGEF-AFRSDVRSVKLSRDRI-VVV---LEHKIYVYSFVDLKLLHQIE---------------  169 (415)
Q Consensus       110 ~~~~~~i~vwd~~~~~~~~~~-~~~~~i~~l~~~~~~~-~~~---~d~~i~iwd~~~~~~~~~~~---------------  169 (415)
                          ++|+|||+.++..+..+ .|...+.+++|+|++. +++   .|+.|++||+.+++......               
T Consensus       166 ----~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~  241 (393)
T 4gq1_A          166 ----CTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNT  241 (393)
T ss_dssp             ----SEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEES
T ss_pred             ----CeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccc
Confidence                99999999887766555 4899999999999875 455   69999999998776543322               


Q ss_pred             ----------ccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCc-ceEEEecCccceEEE----------------
Q 014977          170 ----------TLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN-MIKLINAHDSHIACF----------------  222 (415)
Q Consensus       170 ----------~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~-~~~~~~~~~~~i~~l----------------  222 (415)
                                .+...+..+.+. .+++..+++ ++.|+++++|+.... ....+..|...+..+                
T Consensus       242 ~~~~~~~~~~~~~~~v~~v~~~-~~dg~~l~s-~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (393)
T 4gq1_A          242 LPLVNTCHSSGIASSLANVRWI-GSDGSGILA-MCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLL  319 (393)
T ss_dssp             GGGC------CCSSSCSEEEEE-TTTTCEEEE-ECTTSEEEEEEC-------------------CCSCSEEEECSSCCSS
T ss_pred             ccceeeeecccccccceeeeee-cCCCCEEEE-EeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcce
Confidence                      222222333332 256667765 678999999987542 233333333333322                


Q ss_pred             --EeCC--CCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEcee
Q 014977          223 --TLTL--DGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV  292 (415)
Q Consensus       223 --~~sp--~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~  292 (415)
                        .++|  ++.++++|+.||. |+|||+.+++.+..+..  |..+|.+++|+|||++||+++.+| +.+|++..
T Consensus       320 ~~~~~~~~~~~~~~sgs~Dg~-V~lwd~~~~~~~~~~~~--~~~~V~svafspdG~~LA~as~~G-v~lvrL~g  389 (393)
T 4gq1_A          320 GACPHPRYMDYFATAHSQHGL-IQLINTYEKDSNSIPIQ--LGMPIVDFCWHQDGSHLAIATEGS-VLLTRLMG  389 (393)
T ss_dssp             CCEECSSCTTEEEEEETTTTE-EEEEETTCTTCCEEEEE--CSSCEEEEEECTTSSEEEEEESSE-EEEEEEGG
T ss_pred             eEEEccCCCCEEEEEECCCCE-EEEEECCCCcEEEEecC--CCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEeC
Confidence              2332  3446778889999 99999999988877776  677999999999999999999877 77777653

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.95  E-value=2.8e-25  Score=199.47  Aligned_cols=241  Identities=9%  Similarity=0.104  Sum_probs=163.0

Q ss_pred             ceEEEEEeCCCC---EEEEEeCCcEEEEEccCC---ceeEEEeccC-----------------------CCeeEEEEeee
Q 014977           46 ELISVSWNQDYG---CFAAGTSCGFRIYNCEPF---KETFRRDLKS-----------------------GGFRIVEMLFR   96 (415)
Q Consensus        46 ~V~~l~~sp~g~---~la~g~d~~v~iw~~~~~---~~~~~~~~~~-----------------------~~~~~~~~~~~   96 (415)
                      .+.++-|-..|-   .++++++..|++|+....   ++.+...++.                       +...+..++++
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~s  120 (356)
T 2w18_A           41 DVSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCS  120 (356)
T ss_dssp             EEEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC-
T ss_pred             EEeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEEC
Confidence            355666655443   666777999999999876   4444433311                       11245567777


Q ss_pred             CC----eEEEEecCCCC---------------CCCCCeEEEEEC-CCCCEEEEEE-ccCceeEEEEcC---CeEEEE---
Q 014977           97 CN----ILALVGAGDNS---------------QYPPTKVIIWDD-HQSRCIGEFA-FRSDVRSVKLSR---DRIVVV---  149 (415)
Q Consensus        97 ~~----~~~l~s~~~d~---------------~~~~~~i~vwd~-~~~~~~~~~~-~~~~i~~l~~~~---~~~~~~---  149 (415)
                      |+    +..+++++.+.               ...++.|++|++ .+|+.+..+. |...+..++|++   ++.+++   
T Consensus       121 pd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS  200 (356)
T 2w18_A          121 SDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTT  200 (356)
T ss_dssp             -----CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEE
T ss_pred             CCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEec
Confidence            88    66666654210               012488888887 4477766666 777888888887   567777   


Q ss_pred             eCCeEEEEEcCCceeeeEEeccCC-CcceEEEecCCCceEEE-----------EeCCccCeEEEEEcCCcce-EEE----
Q 014977          150 LEHKIYVYSFVDLKLLHQIETLAN-LRGLCCLSHHSSTSVLA-----------CPGLQRGQVRIEHFGLNMI-KLI----  212 (415)
Q Consensus       150 ~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~-----------~~g~~dg~v~i~~~~~~~~-~~~----  212 (415)
                      .|++|+|||+.++++++++.++.. ...+.+++++|++.+++           .+|+.|++|++|+...... ..+    
T Consensus       201 ~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~  280 (356)
T 2w18_A          201 IMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCL  280 (356)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECC
T ss_pred             CCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeec
Confidence            599999999999999999976543 22344445555666652           4578999999998765443 333    


Q ss_pred             -ecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCccc-EEEEEeCCCCCEEEEEeCCCeEEEEEc
Q 014977          213 -NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAE-IYSIALSPNVQWLAVASDKGTVHIFSL  290 (415)
Q Consensus       213 -~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~-v~~l~~spdg~~l~s~s~dg~i~vwd~  290 (415)
                       .+|...+.+..+  ++.++++++.|++ |+|||+.+++.+.++.+  |... +..++|+|||++|++|+.|++|+|||+
T Consensus       281 p~Gh~~~~lsg~~--sg~~lASgS~DgT-IkIWDl~tGk~l~tL~g--H~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          281 PPGQAGRFLEGDV--KDHCAAAILTSGT-IAIWDLLLGQCTALLPP--VSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             CTTCCCCEEEEEE--ETTEEEEEETTSC-EEEEETTTCSEEEEECC--C--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             cCCCcceeEcccc--CCCEEEEEcCCCc-EEEEECCCCcEEEEecC--CCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence             255555444444  3788999999999 99999999999999987  5554 446899999999999999999999996


Q ss_pred             e
Q 014977          291 R  291 (415)
Q Consensus       291 ~  291 (415)
                      .
T Consensus       356 ~  356 (356)
T 2w18_A          356 S  356 (356)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.95  E-value=6.5e-25  Score=209.39  Aligned_cols=237  Identities=10%  Similarity=0.077  Sum_probs=193.4

Q ss_pred             CCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEE-EecCCCCCCCCCeEEE
Q 014977           41 DVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILAL-VGAGDNSQYPPTKVII  118 (415)
Q Consensus        41 ~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~~~~~~i~v  118 (415)
                      .+|...|.+++|+++++++++++ ++.|++||+++.+.....  ..+...+..+.|++++..+ +++..+     +.|++
T Consensus       166 ~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~i~~  238 (433)
T 3bws_A          166 KKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATV--DLTGKWSKILLYDPIRDLVYCSNWIS-----EDISV  238 (433)
T ss_dssp             HTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEE--ECSSSSEEEEEEETTTTEEEEEETTT-----TEEEE
T ss_pred             cccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEE--cCCCCCeeEEEEcCCCCEEEEEecCC-----CcEEE
Confidence            47888999999999999999999 999999999876655443  3667788899999987555 565566     99999


Q ss_pred             EECCCCCEEEEEEccCceeEEEEcCCeEEEE--e---------CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCce
Q 014977          119 WDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--L---------EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS  187 (415)
Q Consensus       119 wd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (415)
                      ||+.+++.+..+.....+.+++|+|++..++  .         |+.|++||+.+++.+..+....   ....+.+++++.
T Consensus       239 ~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~g~  315 (433)
T 3bws_A          239 IDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPG---NKRHIVSGNTEN  315 (433)
T ss_dssp             EETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEE---CEEEEEECSSTT
T ss_pred             EECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCC---CcceEEECCCCC
Confidence            9999999888888777899999999997666  2         6799999999988877663322   345566677776


Q ss_pred             EEEEeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeC---------------CCcEEEEEECCCCcEE
Q 014977          188 VLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATAST---------------RGTLIRIFNTVDGTRL  252 (415)
Q Consensus       188 ~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~---------------dg~~I~vwd~~~~~~~  252 (415)
                      .++++++.++.|++|+...........+...+.+++|+|+|++|++++.               ||. |++||+.+++.+
T Consensus       316 ~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~-v~~~d~~~~~~~  394 (433)
T 3bws_A          316 KIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGK-VYVIDTTTDTVK  394 (433)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCE-EEEEETTTTEEE
T ss_pred             EEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceE-EEEEECCCCcEE
Confidence            6666677899999999876544444457788999999999998888876               468 999999999998


Q ss_pred             EEEecCCCcccEEEEEeCCCCCEEEEEeC-CCeEEEEEce
Q 014977          253 QEVRRGVDRAEIYSIALSPNVQWLAVASD-KGTVHIFSLR  291 (415)
Q Consensus       253 ~~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd~~  291 (415)
                      ..+..   ...+.+++|+|+|++|++++. |+.|++|+++
T Consensus       395 ~~~~~---~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          395 EFWEA---GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             EEEEC---SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred             EEecC---CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence            88875   346899999999999998875 9999999986

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.3e-26  Score=236.38  Aligned_cols=247  Identities=12%  Similarity=0.108  Sum_probs=192.4

Q ss_pred             ccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECC--CCCEEEEEE-ccCceeEEEEcCC--eEEEE---eCCeE
Q 014977           83 LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH--QSRCIGEFA-FRSDVRSVKLSRD--RIVVV---LEHKI  154 (415)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~--~~~~~~~~~-~~~~i~~l~~~~~--~~~~~---~d~~i  154 (415)
                      +.+|...|.++.|++++..+++++.|     |.|++||+.  +++.+..+. |...|.+++|+++  +.+++   .||.|
T Consensus         5 l~gH~~~V~~l~~s~dg~~latg~~d-----g~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I   79 (753)
T 3jro_A            5 ANAHNELIHDAVLDYYGKRLATCSSD-----KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV   79 (753)
T ss_dssp             ---CCCCEEEECCCSSSCCEEEEETT-----TEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCE
T ss_pred             cccCcceeEEEEECCCCCeEEEEECC-----CcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeE
Confidence            45888999999999999999999888     999999987  445666666 8999999999987  77776   69999


Q ss_pred             EEEEcCCce--eeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCc---ceEEEecCccceEEEEeCC---
Q 014977          155 YVYSFVDLK--LLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN---MIKLINAHDSHIACFTLTL---  226 (415)
Q Consensus       155 ~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~---~~~~~~~~~~~i~~l~~sp---  226 (415)
                      ++||+.+++  .+..+..|...+..++++++.++.++++ |+.||.|++|+....   ....+..|...|.+++|+|   
T Consensus        80 ~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~s-gs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~  158 (753)
T 3jro_A           80 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLV-ASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI  158 (753)
T ss_dssp             EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEE-EETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-
T ss_pred             EEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEE-EeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccc
Confidence            999998886  5666667776544444444422667766 668999999998664   4566788999999999999   


Q ss_pred             ----------CCCEEEEEeCCCcEEEEEECCCC----cEEEEEecCCCcccEEEEEeCCC---CCEEEEEeCCCeEEEEE
Q 014977          227 ----------DGLLLATASTRGTLIRIFNTVDG----TRLQEVRRGVDRAEIYSIALSPN---VQWLAVASDKGTVHIFS  289 (415)
Q Consensus       227 ----------~g~~l~s~s~dg~~I~vwd~~~~----~~~~~~~~~~~~~~v~~l~~spd---g~~l~s~s~dg~i~vwd  289 (415)
                                ++.+|++|+.||. |++||++++    .....+..  |...|.+++|+|+   +++|++++.||.|++||
T Consensus       159 ~~~~~~~~~~d~~~l~sgs~dg~-I~iwd~~~~~~~~~~~~~~~~--h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd  235 (753)
T 3jro_A          159 EEDGEHNGTKESRKFVTGGADNL-VKIWKYNSDAQTYVLESTLEG--HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT  235 (753)
T ss_dssp             --------CGGGCCEEEEETTSC-EEEEEEETTTTEEEEEEEECC--CSSCEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred             ccccccccCCCCCEEEEEECCCe-EEEEeccCCcccceeeeeecC--CCCcEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence                      5899999999999 999999877    44556666  7889999999999   89999999999999999


Q ss_pred             ceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecC
Q 014977          290 LRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGS  369 (415)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (415)
                      +.+++........                                         ..          ......+..++|++
T Consensus       236 ~~~~~~~~~~~~~-----------------------------------------~~----------~~~~~~v~~l~~sp  264 (753)
T 3jro_A          236 QDNEQGPWKKTLL-----------------------------------------KE----------EKFPDVLWRASWSL  264 (753)
T ss_dssp             ESSSSSCCBCCBS-----------------------------------------SS----------SCCSSCCCCEEECT
T ss_pred             CCCCCCcceeEEe-----------------------------------------cc----------CCCCCceEEEEEcC
Confidence            9987532100000                                         00          00113445578999


Q ss_pred             C-CEEEEEEeCCcEEEEEEec
Q 014977          370 Q-NTVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       370 ~-~~i~~~~~dg~~~~~~~~~  389 (415)
                      + ..+++++.||.|++|++..
T Consensus       265 dg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          265 SGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             TTCCEEEECSSSCEECCBCCS
T ss_pred             CCCEEEEEcCCCEEEEEecCC
Confidence            8 6677788899999999874

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.94  E-value=4.7e-25  Score=211.74  Aligned_cols=241  Identities=8%  Similarity=0.003  Sum_probs=187.2

Q ss_pred             CCCCCCceEEEEEeCCCCEE-EEEe-CCcEEEEEcc--CCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCe
Q 014977           40 SDVDEIELISVSWNQDYGCF-AAGT-SCGFRIYNCE--PFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK  115 (415)
Q Consensus        40 ~~~h~~~V~~l~~sp~g~~l-a~g~-d~~v~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~  115 (415)
                      ..+|.+.|.+++|+|++++| ++|+ |+.|+||++.  +.+.......+.+...+.++.|++++..+++++.+     +.
T Consensus        98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~-----g~  172 (450)
T 2vdu_B           98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKF-----GD  172 (450)
T ss_dssp             --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT-----SE
T ss_pred             CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCC-----Cc
Confidence            35788899999999999996 7887 9999999998  65544433323566789999999999999998887     99


Q ss_pred             EEEEECCCCCEEE----EEE-ccCceeEEEEcCC---eEEEE---eCCeEEEEEcCCceeeeE-EeccCCCcceEEEecC
Q 014977          116 VIIWDDHQSRCIG----EFA-FRSDVRSVKLSRD---RIVVV---LEHKIYVYSFVDLKLLHQ-IETLANLRGLCCLSHH  183 (415)
Q Consensus       116 i~vwd~~~~~~~~----~~~-~~~~i~~l~~~~~---~~~~~---~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~  183 (415)
                      |++|++.+++...    .+. |...|.+++|+|+   +.+++   .|+.|++||+.+++.+.. +.+|...+  .++.++
T Consensus       173 v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v--~~~~~s  250 (450)
T 2vdu_B          173 VYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFV--SSICCG  250 (450)
T ss_dssp             EEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCE--EEEEEC
T ss_pred             EEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCce--EEEEEC
Confidence            9999998876543    444 8899999999999   88777   689999999999888877 44676644  444555


Q ss_pred             CCceEEEEeCCccCeEEEEEcCC-cceEEEec-------------------------CccceEEEEeCCCCCEEEEEe-C
Q 014977          184 SSTSVLACPGLQRGQVRIEHFGL-NMIKLINA-------------------------HDSHIACFTLTLDGLLLATAS-T  236 (415)
Q Consensus       184 ~~~~~l~~~g~~dg~v~i~~~~~-~~~~~~~~-------------------------~~~~i~~l~~sp~g~~l~s~s-~  236 (415)
                       ++.+|++ ++.|+.|++|+... +.+..+..                         ....+..++|+|++++|++++ .
T Consensus       251 -d~~~l~s-~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~  328 (450)
T 2vdu_B          251 -KDYLLLS-AGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEA  328 (450)
T ss_dssp             -STTEEEE-EESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETT
T ss_pred             -CCCEEEE-EeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECC
Confidence             6677776 66899999999765 44555542                         235688999999999999998 8


Q ss_pred             CCcEEEEEEC--CCC---cEEEEEecCCCcccEEEEEeCCCCCEEEEEeC------CCeEEEEEceec
Q 014977          237 RGTLIRIFNT--VDG---TRLQEVRRGVDRAEIYSIALSPNVQWLAVASD------KGTVHIFSLRVR  293 (415)
Q Consensus       237 dg~~I~vwd~--~~~---~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~------dg~i~vwd~~~~  293 (415)
                      ++. |+|||+  .++   +.+..+..  + ..|.+++|+|++.++++++.      +..|.+|.+...
T Consensus       329 d~~-i~iw~~~~~~~~~l~~~~~~~~--~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~  392 (450)
T 2vdu_B          329 TKC-IIILEMSEKQKGDLALKQIITF--P-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLN  392 (450)
T ss_dssp             CSE-EEEEEECSSSTTCEEEEEEEEC--S-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred             CCe-EEEEEeccCCCCceeeccEecc--C-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcC
Confidence            888 999999  565   66667776  4 68999999996544444443      456899988754

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.94  E-value=1.4e-24  Score=204.64  Aligned_cols=228  Identities=12%  Similarity=0.110  Sum_probs=156.0

Q ss_pred             eeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEE-----E-ccCceeEEEEcC--------CeEEEE---eCCeEEEE
Q 014977           95 FRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEF-----A-FRSDVRSVKLSR--------DRIVVV---LEHKIYVY  157 (415)
Q Consensus        95 ~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~-----~-~~~~i~~l~~~~--------~~~~~~---~d~~i~iw  157 (415)
                      +.++..++++++.|     ++|++||+.+++.....     . |...|++++|+|        |+++++   .|++|+||
T Consensus        97 ~~~~~~~las~~~d-----~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~W  171 (393)
T 4gq1_A           97 SPVYSLFLACVCQD-----NTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIW  171 (393)
T ss_dssp             CCEEEEEEEEEETT-----SCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEE
T ss_pred             cCCCCCEEEEEeCC-----CcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEE
Confidence            34566789999988     99999999888765432     2 889999999997        788888   69999999


Q ss_pred             EcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcce--------------------------EE
Q 014977          158 SFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMI--------------------------KL  211 (415)
Q Consensus       158 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~--------------------------~~  211 (415)
                      |+.++..+..+..+..+  +.++.++|++..++++|+.|++|++|+......                          ..
T Consensus       172 d~~~~~~~~~~~~~~~~--v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~  249 (393)
T 4gq1_A          172 RLTDEGPILAGYPLSSP--GISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCH  249 (393)
T ss_dssp             EEETTEEEEEEEECSSC--EEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC----
T ss_pred             ECCCCceeeeecCCCCC--cEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeee
Confidence            99888887777777774  455556666654344578999999998764221                          11


Q ss_pred             EecCccceEEEEeC-CCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEe------------------CC-
Q 014977          212 INAHDSHIACFTLT-LDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIAL------------------SP-  271 (415)
Q Consensus       212 ~~~~~~~i~~l~~s-p~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~------------------sp-  271 (415)
                      ..+|...+.++.|+ |+|+.|++++.|+. +++||+.+++....+..  +...+..+.+                  +| 
T Consensus       250 ~~~~~~~v~~v~~~~~dg~~l~s~s~d~~-i~vwd~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (393)
T 4gq1_A          250 SSGIASSLANVRWIGSDGSGILAMCKSGA-WLRWNLFANNDYNEISD--STMKLGPKNLLPNVQGISLFPSLLGACPHPR  326 (393)
T ss_dssp             --CCSSSCSEEEEETTTTCEEEEECTTSE-EEEEEC---------------------CCSCSEEEECSSCCSSCCEECSS
T ss_pred             cccccccceeeeeecCCCCEEEEEeCCCC-EEEEECccCCCCceEee--ecCccccEEEccccccccccCcceeEEEccC
Confidence            24577788899986 89999999999999 99999988876666554  3333333333                  22 


Q ss_pred             -CCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCccccccc
Q 014977          272 -NVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEW  350 (415)
Q Consensus       272 -dg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (415)
                       ++.++++|+.||+|+|||+.+++...                                                     
T Consensus       327 ~~~~~~~sgs~Dg~V~lwd~~~~~~~~-----------------------------------------------------  353 (393)
T 4gq1_A          327 YMDYFATAHSQHGLIQLINTYEKDSNS-----------------------------------------------------  353 (393)
T ss_dssp             CTTEEEEEETTTTEEEEEETTCTTCCE-----------------------------------------------------
T ss_pred             CCCEEEEEECCCCEEEEEECCCCcEEE-----------------------------------------------------
Confidence             34467788899999999998876431                                                     


Q ss_pred             ceEEEEeCCCceEEEEecCCCEEEEEEeCCcEEEEEEe
Q 014977          351 SFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFD  388 (415)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~dg~~~~~~~~  388 (415)
                         ...-....+..++|+|+++.+++++++.+.+|.+.
T Consensus       354 ---~~~~~~~~V~svafspdG~~LA~as~~Gv~lvrL~  388 (393)
T 4gq1_A          354 ---IPIQLGMPIVDFCWHQDGSHLAIATEGSVLLTRLM  388 (393)
T ss_dssp             ---EEEECSSCEEEEEECTTSSEEEEEESSEEEEEEEG
T ss_pred             ---EecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEe
Confidence               11112345677899999666666677777777764

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.94  E-value=8e-25  Score=202.48  Aligned_cols=189  Identities=18%  Similarity=0.214  Sum_probs=148.1

Q ss_pred             eeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE--eCCeEEEEEcC---------Cc
Q 014977           94 LFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFV---------DL  162 (415)
Q Consensus        94 ~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~---------~~  162 (415)
                      .+..++..+++++.|     +.|++||+.+++.+..+. ...|.++.++|+  ++.  .|+.|++|+..         ++
T Consensus        43 ~~~~d~~~l~sg~~D-----g~v~iwd~~~~~~~~~~~-~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~~  114 (343)
T 3lrv_A           43 SMYYDKWVCMCRCED-----GALHFTQLKDSKTITTIT-TPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSKTN  114 (343)
T ss_dssp             SSSEEEEEEEEEEET-----TEEEEEEESSSSCEEEEE-EECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETTTC
T ss_pred             hhcCCCCEEEEECCC-----CcEEEEECCCCcEEEEEe-cCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeecCCc
Confidence            445678889999988     999999999999888877 456777788887  333  68888888654         44


Q ss_pred             eeeeEEe-ccCCCcceEEEecCC--CceEEEEeCCccCeEEEEEcCCcce-EEEe-cCccceEEEEeCCCCCEEEEEeCC
Q 014977          163 KLLHQIE-TLANLRGLCCLSHHS--STSVLACPGLQRGQVRIEHFGLNMI-KLIN-AHDSHIACFTLTLDGLLLATASTR  237 (415)
Q Consensus       163 ~~~~~~~-~~~~~~~~~~~~~~~--~~~~l~~~g~~dg~v~i~~~~~~~~-~~~~-~~~~~i~~l~~sp~g~~l~s~s~d  237 (415)
                      +.+..+. .|..  .+.++.++|  ++.++++ ++.||+|++|+...... .... .|...+.+++|+|+|.+|++|+.|
T Consensus       115 ~~~~~~~~~~~~--~v~~~~~~~~~~~~~l~s-~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~d  191 (343)
T 3lrv_A          115 KVLREIEVDSAN--EIIYMYGHNEVNTEYFIW-ADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPD  191 (343)
T ss_dssp             CEEEEEECCCSS--CEEEEECCC---CCEEEE-EETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTT
T ss_pred             ceeEEeecCCCC--CEEEEEcCCCCCCCEEEE-EeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCC
Confidence            5444443 3333  566777777  7888876 66899999999876544 3332 455689999999999999999999


Q ss_pred             CcEEEEEECCCCcEE-EEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977          238 GTLIRIFNTVDGTRL-QEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       238 g~~I~vwd~~~~~~~-~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                      |. |++||+++++.+ ..+... |...|.+++|+|++.+|++++ |+.|++||+++++..
T Consensus       192 g~-i~iwd~~~~~~~~~~~~~~-h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~  248 (343)
T 3lrv_A          192 GI-LDVYNLSSPDQASSRFPVD-EEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGT  248 (343)
T ss_dssp             SC-EEEEESSCTTSCCEECCCC-TTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTC
T ss_pred             CE-EEEEECCCCCCCccEEecc-CCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcc
Confidence            99 999999999877 667652 678999999999999999999 459999999987653

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.94  E-value=6.1e-24  Score=193.69  Aligned_cols=230  Identities=13%  Similarity=0.173  Sum_probs=173.2

Q ss_pred             EEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE---ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCcee
Q 014977           91 VEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA---FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKL  164 (415)
Q Consensus        91 ~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~---~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~  164 (415)
                      ..+.|++++ +|+.+. |     ++|+|||+.+++++..+.   |...|.+++|+|++++++   .|+.|++||+++++.
T Consensus        29 ~~l~WS~~~-~lAvg~-D-----~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~  101 (318)
T 4ggc_A           29 NLVDWSSGN-VLAVAL-D-----NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR  101 (318)
T ss_dssp             BCEEECTTS-EEEEEE-T-----TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred             eEEEECCCC-EEEEEe-C-----CEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee
Confidence            447788887 445443 4     999999999999998886   677899999999999888   699999999999999


Q ss_pred             eeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC--cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEE
Q 014977          165 LHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL--NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIR  242 (415)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~--~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~  242 (415)
                      +..+..|..  .+.++++.+.  ++++ ++.++.+++|....  ..+..+.+|...+..+.+++++++|++++.|+. |+
T Consensus       102 ~~~~~~h~~--~~~~~~~~~~--~l~s-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~-i~  175 (318)
T 4ggc_A          102 LRNMTSHSA--RVGSLSWNSY--ILSS-GSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNL-VN  175 (318)
T ss_dssp             EEEEECCSS--CEEEEEEETT--EEEE-EETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC-EE
T ss_pred             EEEecCccc--eEEEeecCCC--EEEE-EecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcc-ee
Confidence            999988876  4556666543  5554 77899999977654  456678899999999999999999999999999 99


Q ss_pred             EEECCCCcEE----EEEec------------------------------------------CCCcccEEEEEeCCCCCEE
Q 014977          243 IFNTVDGTRL----QEVRR------------------------------------------GVDRAEIYSIALSPNVQWL  276 (415)
Q Consensus       243 vwd~~~~~~~----~~~~~------------------------------------------~~~~~~v~~l~~spdg~~l  276 (415)
                      +||+++++..    .....                                          ..+...+..+.|+|++..+
T Consensus       176 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~  255 (318)
T 4ggc_A          176 VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKEL  255 (318)
T ss_dssp             EEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEE
T ss_pred             EEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccce
Confidence            9999765311    11111                                          0012245566667766666


Q ss_pred             EEEe--CCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEE
Q 014977          277 AVAS--DKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQ  354 (415)
Q Consensus       277 ~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (415)
                      ++++  .|+.|+|||+++++...                                                        .
T Consensus       256 ~~~sg~~d~~i~iwd~~~~~~~~--------------------------------------------------------~  279 (318)
T 4ggc_A          256 ISGHGFAQNQLVIWKYPTMAKVA--------------------------------------------------------E  279 (318)
T ss_dssp             EEEECTTTCCEEEEETTTCCEEE--------------------------------------------------------E
T ss_pred             EEEEEcCCCEEEEEECCCCcEEE--------------------------------------------------------E
Confidence            6544  57777777776665332                                                        2


Q ss_pred             EEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977          355 FHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       355 ~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~  389 (415)
                      ++-+.+.+..++|+++ ..|++++.||.|++|++.+
T Consensus       280 l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~  315 (318)
T 4ggc_A          280 LKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE  315 (318)
T ss_dssp             ECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred             EcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence            3333456778899998 6788888899999998865

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.93  E-value=2e-25  Score=213.02  Aligned_cols=224  Identities=8%  Similarity=-0.015  Sum_probs=176.1

Q ss_pred             cCCCCCCceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEE
Q 014977           39 FSDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII  118 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~v  118 (415)
                      ...+|...|++++|+|+|      .++.+.+|+.+.   .....+ .+...|.++.|+|++..+++++.|     |.|++
T Consensus        47 ~l~gh~~~v~~V~FsPdg------~~~~~~~~~~~~---~~~~~~-~~~~~V~~vawSPdG~~LAs~s~d-----g~V~i  111 (588)
T 2j04_A           47 DINCNSKNLFHVKEFPLE------FENKLDFELAQQ---NGLLNS-QPVCYPRVCKPSPIDDWMAVLSNN-----GNVSV  111 (588)
T ss_dssp             CCSSBGGGTEEEEEECCC------CCCTTTTSCCCS---SCSSTT-SCSCCEEEEEECSSSSCEEEEETT-----SCEEE
T ss_pred             eecCCCccEEEEEECCCC------CcceEEEEeCCC---ceEeec-CCCCcEEEEEECCCCCEEEEEeCC-----CcEEE
Confidence            346899999999999999      455555555432   122223 447789999999999999999998     99999


Q ss_pred             EECCCCCEEEEEEccC-----ceeEEEEcCCeEEEE---eCCeEEEEEcCCcee-------eeEE----eccCCCcceEE
Q 014977          119 WDDHQSRCIGEFAFRS-----DVRSVKLSRDRIVVV---LEHKIYVYSFVDLKL-------LHQI----ETLANLRGLCC  179 (415)
Q Consensus       119 wd~~~~~~~~~~~~~~-----~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~-------~~~~----~~~~~~~~~~~  179 (415)
                      ||...  ++..+.|..     .+.+++|+|||++++   .||+|++||+.+++.       +..+    .+|..  .+.+
T Consensus       112 wd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~--~V~s  187 (588)
T 2j04_A          112 FKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKD--WVTH  187 (588)
T ss_dssp             EETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCC--CEEE
T ss_pred             EeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccc--cEEE
Confidence            99544  555555443     599999999999998   699999999988753       5565    33444  6777


Q ss_pred             EecCCCceEEEEeCCccCeEEEEEcCCcce----EEE-ecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEE
Q 014977          180 LSHHSSTSVLACPGLQRGQVRIEHFGLNMI----KLI-NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQE  254 (415)
Q Consensus       180 ~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~----~~~-~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~  254 (415)
                      ++++|++  +++ ++.|++|++|+......    +.+ .+|...|.+++|+  |+.||+++ ++. |++||+.+++....
T Consensus       188 VawSPdg--Laa-ss~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~t-IkLWd~~~~~~~~~  260 (588)
T 2j04_A          188 IVWYEDV--LVA-ALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGY-VHKIDLKNYSISSL  260 (588)
T ss_dssp             EEEETTE--EEE-EETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSE-EEEEETTTTEEEEE
T ss_pred             EEEcCCc--EEE-EeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCe-EEEEECCCCeEEEE
Confidence            7777887  444 45799999999877653    346 4788999999999  68999988 688 99999987776433


Q ss_pred             EecCCCcccEEEEEe--CCCCCEEEEEeCCCeEEEEEce
Q 014977          255 VRRGVDRAEIYSIAL--SPNVQWLAVASDKGTVHIFSLR  291 (415)
Q Consensus       255 ~~~~~~~~~v~~l~~--spdg~~l~s~s~dg~i~vwd~~  291 (415)
                      ..+  |.+.|.+++|  +||+..|++++.||+ ++|.++
T Consensus       261 ~~g--h~~~V~~va~~~s~d~~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          261 KTG--SLENFHIIPLNHEKESTILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             ECS--CCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred             EcC--CCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence            334  8889999999  999999999999999 999986

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.92  E-value=2.8e-23  Score=186.57  Aligned_cols=234  Identities=12%  Similarity=0.140  Sum_probs=160.8

Q ss_pred             eEEEEeeeCCe---EEEEecCCCCCCCCCeEEEEECCCC---CEEEEEE-ccC-------------------------ce
Q 014977           89 RIVEMLFRCNI---LALVGAGDNSQYPPTKVIIWDDHQS---RCIGEFA-FRS-------------------------DV  136 (415)
Q Consensus        89 ~~~~~~~~~~~---~~l~s~~~d~~~~~~~i~vwd~~~~---~~~~~~~-~~~-------------------------~i  136 (415)
                      .+..+.|-..+   ..+++++.      ..|++|+..++   +.+++.. |..                         .|
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~------~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v  114 (356)
T 2w18_A           41 DVSAMFWERAGCKEPCIITACE------DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREI  114 (356)
T ss_dssp             EEEEEEEC----CEEEEEEEES------SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEE
T ss_pred             EEeeeeeccCCCCccEEEEecc------ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccce
Confidence            34455554433   36666666      79999998888   6666665 332                         56


Q ss_pred             eEEEEcCC----eEEEEe-----------------------CCeEEEEEc-CCceeeeEEeccCCCcceEEEec-CCCce
Q 014977          137 RSVKLSRD----RIVVVL-----------------------EHKIYVYSF-VDLKLLHQIETLANLRGLCCLSH-HSSTS  187 (415)
Q Consensus       137 ~~l~~~~~----~~~~~~-----------------------d~~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  187 (415)
                      +.++++|+    ++.++.                       |+.|++|++ .+++.+..+..|...+.+++|++ .+++.
T Consensus       115 ~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~  194 (356)
T 2w18_A          115 RALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQE  194 (356)
T ss_dssp             EEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTT
T ss_pred             EEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCc
Confidence            67777777    555541                       677778887 44777777777777777788887 55666


Q ss_pred             EEEEeCCccCeEEEEEcC-CcceEEEecCcc---ceEEEEeCCCCCEE------------EEEeCCCcEEEEEECCCCcE
Q 014977          188 VLACPGLQRGQVRIEHFG-LNMIKLINAHDS---HIACFTLTLDGLLL------------ATASTRGTLIRIFNTVDGTR  251 (415)
Q Consensus       188 ~l~~~g~~dg~v~i~~~~-~~~~~~~~~~~~---~i~~l~~sp~g~~l------------~s~s~dg~~I~vwd~~~~~~  251 (415)
                      +|++ |+.|++|+||+.. ++.++++.+|..   .+.+++|+|+|+++            ++|+.|++ |++||..+++.
T Consensus       195 ~LaS-gS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~t-IklWd~~tgk~  272 (356)
T 2w18_A          195 ALLG-TTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQ-LIVINPKTTLS  272 (356)
T ss_dssp             EEEE-EETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEE-EEEEETTTTEE
T ss_pred             eEEE-ecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcE-EEEEECCCCEE
Confidence            7765 7799999999987 567888886543   57778999999876            56788899 99999999998


Q ss_pred             EEEEe---cCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCC
Q 014977          252 LQEVR---RGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTG  328 (415)
Q Consensus       252 ~~~~~---~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (415)
                      +..+.   ...|...+.+..++  +.++++++.|++|+|||+.+++...++..|                          
T Consensus       273 l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH--------------------------  324 (356)
T 2w18_A          273 VGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPV--------------------------  324 (356)
T ss_dssp             EEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--------------------------
T ss_pred             EEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCC--------------------------
Confidence            77653   11144444444443  789999999999999999999865432222                          


Q ss_pred             CCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEE
Q 014977          329 ANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSF  387 (415)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~  387 (415)
                                                   .......++|+|+ ..|++++.||+|++|++
T Consensus       325 -----------------------------~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          325 -----------------------------SDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             -------------------------------CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             -----------------------------CCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence                                         0122335799999 56777888999999986

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.92  E-value=1.2e-22  Score=188.75  Aligned_cols=233  Identities=11%  Similarity=0.068  Sum_probs=175.7

Q ss_pred             ceEEEEEeCCCCEEEE-Ee-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCC
Q 014977           46 ELISVSWNQDYGCFAA-GT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ  123 (415)
Q Consensus        46 ~V~~l~~sp~g~~la~-g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~  123 (415)
                      .+..+++.+++..++. ++ ++.|+|||..+.+......   +...+.++.++++...++.   +     +.|++||+.+
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~---~~~~v~~v~~~~~~~~~~~---~-----~~i~i~d~~~  128 (355)
T 3vu4_A           60 HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK---VDAPVKDLFLSREFIVVSY---G-----DVISVFKFGN  128 (355)
T ss_dssp             CCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE---CSSCEEEEEECSSEEEEEE---T-----TEEEEEESST
T ss_pred             CeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE---CCCceEEEEEcCCEEEEEE---c-----CEEEEEECCC
Confidence            5788899999888864 44 8899999999877655543   4457889999998876654   3     8999999988


Q ss_pred             C-CEEEEEEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCce----------------eeeEEeccCCCcceEEEecC
Q 014977          124 S-RCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLK----------------LLHQIETLANLRGLCCLSHH  183 (415)
Q Consensus       124 ~-~~~~~~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~----------------~~~~~~~~~~~~~~~~~~~~  183 (415)
                      + +.+..+..  ....+++++....+.   .+|.|++||+.+++                .+..+..|..  .+.+++++
T Consensus       129 ~~~~~~~~~~--~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~--~v~~~~~s  204 (355)
T 3vu4_A          129 PWKRITDDIR--FGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTN--PIKMVRLN  204 (355)
T ss_dssp             TCCBSSCCEE--EEEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSS--CEEEEEEC
T ss_pred             CceeeEEecc--CCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCC--ceEEEEEC
Confidence            8 66555544  444456666433332   58999999998765                2667788877  45556666


Q ss_pred             CCceEEEEeCCccCe-EEEEEcC-CcceEEEe-c-CccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEE--EE---
Q 014977          184 SSTSVLACPGLQRGQ-VRIEHFG-LNMIKLIN-A-HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRL--QE---  254 (415)
Q Consensus       184 ~~~~~l~~~g~~dg~-v~i~~~~-~~~~~~~~-~-~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~--~~---  254 (415)
                      |++.+|++ |+.|++ |++|+.. ++.+..+. + |...|.+++|+|+|++|++++.|+. |+|||++.+...  ..   
T Consensus       205 ~~g~~l~s-~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~-v~iw~~~~~~~~~~~~~~~  282 (355)
T 3vu4_A          205 RKSDMVAT-CSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWT-LHVFEIFNDQDNKRHALKG  282 (355)
T ss_dssp             TTSSEEEE-EETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCE-EEEEESSCCSCCCSEETTT
T ss_pred             CCCCEEEE-EeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCE-EEEEEccCCCCcccccccc
Confidence            67778876 678998 9999976 56777787 5 9999999999999999999999999 999999765311  11   


Q ss_pred             -----------------EecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977          255 -----------------VRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       255 -----------------~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                                       +... .......++|++|+++|++++.||.+++|++..++..
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~~  340 (355)
T 3vu4_A          283 WINMKYFQSEWSLCNFKLSVD-KHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDEM  340 (355)
T ss_dssp             TEECCCCCCSSCSEEEECCCC-TTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEETTT
T ss_pred             eeeccccccccceeEEEeccC-CCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCCC
Confidence                             1110 1122366899999999999999999999999987754

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.91  E-value=4.8e-23  Score=195.51  Aligned_cols=245  Identities=13%  Similarity=0.085  Sum_probs=175.9

Q ss_pred             CCCceEEEEEeCCCC-EEEEEe-----CC----cEEEEEc--cCCceeEEEeccCCCeeEEEEeeeC-------------
Q 014977           43 DEIELISVSWNQDYG-CFAAGT-----SC----GFRIYNC--EPFKETFRRDLKSGGFRIVEMLFRC-------------   97 (415)
Q Consensus        43 h~~~V~~l~~sp~g~-~la~g~-----d~----~v~iw~~--~~~~~~~~~~~~~~~~~~~~~~~~~-------------   97 (415)
                      +...+....|.+.|. ++++|+     +|    .++|||+  .+.+.+....+..+...+..+.+.+             
T Consensus        61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~  140 (415)
T 2hqs_A           61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG  140 (415)
T ss_dssp             SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred             cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence            345788889998885 555665     46    7999999  8777655544545544444444432             


Q ss_pred             --CeE-EEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE---eC---CeEEEEEcCCceeeeEE
Q 014977           98 --NIL-ALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LE---HKIYVYSFVDLKLLHQI  168 (415)
Q Consensus        98 --~~~-~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~---~d---~~i~iwd~~~~~~~~~~  168 (415)
                        ... ++++.... .-..+.|++||+..+.......|...+.+++|+|+++.++   .+   ..|++||+.+++.. .+
T Consensus       141 ~~~~~l~~~s~~~~-~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l  218 (415)
T 2hqs_A          141 AFRTRIAYVVQTNG-GQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QV  218 (415)
T ss_dssp             CTTCEEEEEEECSS-SSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EE
T ss_pred             cCCCEEEEEEecCC-CCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-Ee
Confidence              223 33332211 0011699999987555444444889999999999998887   34   49999999988775 34


Q ss_pred             eccCCCcceEEEecCCCceEEEEeCCccCe--EEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCC-C--cEEEE
Q 014977          169 ETLANLRGLCCLSHHSSTSVLACPGLQRGQ--VRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTR-G--TLIRI  243 (415)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~--v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d-g--~~I~v  243 (415)
                      ..+..  .+.++.++|++..|+++++.++.  |++|+........+..|...+.+++|+|||++|++++.+ +  . |++
T Consensus       219 ~~~~~--~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~-i~~  295 (415)
T 2hqs_A          219 ASFPR--HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQ-VYK  295 (415)
T ss_dssp             ECCSS--CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCE-EEE
T ss_pred             ecCCC--cccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcE-EEE
Confidence            44444  56677778888888866666554  777888777777888899999999999999998888764 4  5 888


Q ss_pred             EECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCC---CeEEEEEceeccc
Q 014977          244 FNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK---GTVHIFSLRVRVV  295 (415)
Q Consensus       244 wd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d---g~i~vwd~~~~~~  295 (415)
                      ||+.+++.. .+..  +...+..++|+|||++|++++.+   ..|++||+.+++.
T Consensus       296 ~d~~~~~~~-~l~~--~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~  347 (415)
T 2hqs_A          296 VNINGGAPQ-RITW--EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV  347 (415)
T ss_dssp             EETTSSCCE-ECCC--SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE
T ss_pred             EECCCCCEE-EEec--CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE
Confidence            899887743 3443  45678999999999999988764   5899999987763

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.90  E-value=3.6e-21  Score=188.36  Aligned_cols=231  Identities=10%  Similarity=0.043  Sum_probs=176.5

Q ss_pred             EeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEEC--CCCCEEE
Q 014977           52 WNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD--HQSRCIG  128 (415)
Q Consensus        52 ~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~--~~~~~~~  128 (415)
                      |+|++.+++++. ++.|.+||..+++.+..... ++.  +..+.++|++.++++++.+     +.|.+||+  .+++.+.
T Consensus       145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~-g~~--~~~v~~spdg~~l~v~~~d-----~~V~v~D~~~~t~~~~~  216 (543)
T 1nir_A          145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDT-GYA--VHISRMSASGRYLLVIGRD-----ARIDMIDLWAKEPTKVA  216 (543)
T ss_dssp             CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEEC-STT--EEEEEECTTSCEEEEEETT-----SEEEEEETTSSSCEEEE
T ss_pred             cCCCCEEEEEEcCCCeEEEEECCCceEEEEEec-Ccc--cceEEECCCCCEEEEECCC-----CeEEEEECcCCCCcEEE
Confidence            789998888888 99999999998776544332 233  6788899999999888887     99999999  8899999


Q ss_pred             EEEccCceeEEEEcC----CeEEEE----eCCeEEEEEcCCceeeeEEeccCC---------CcceEEEecCCCceEEEE
Q 014977          129 EFAFRSDVRSVKLSR----DRIVVV----LEHKIYVYSFVDLKLLHQIETLAN---------LRGLCCLSHHSSTSVLAC  191 (415)
Q Consensus       129 ~~~~~~~i~~l~~~~----~~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~  191 (415)
                      ++.+...+..++|+|    ++++++    .+++|.+||..+++++..+..+..         ...+..+.+++++..+++
T Consensus       217 ~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~v  296 (543)
T 1nir_A          217 EIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIV  296 (543)
T ss_dssp             EEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEE
T ss_pred             EEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEE
Confidence            998878899999999    988776    489999999999999988865321         114455666665555656


Q ss_pred             eCCccCeEEEEEcCCc-ceE--EEecCccceEEEEeCCCCCEEEEEe-CCCcEEEEEECCCCcEEEEEecCC--CcccEE
Q 014977          192 PGLQRGQVRIEHFGLN-MIK--LINAHDSHIACFTLTLDGLLLATAS-TRGTLIRIFNTVDGTRLQEVRRGV--DRAEIY  265 (415)
Q Consensus       192 ~g~~dg~v~i~~~~~~-~~~--~~~~~~~~i~~l~~sp~g~~l~s~s-~dg~~I~vwd~~~~~~~~~~~~~~--~~~~v~  265 (415)
                      +...++.|.+|+.... .+.  .+ .+...+..+.|+|+|++|++++ .++. |.+||+.+++++..+..+.  |.+...
T Consensus       297 s~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~-v~v~D~~tg~l~~~i~~g~~ph~g~g~  374 (543)
T 1nir_A          297 NVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNK-VAVIDSKDRRLSALVDVGKTPHPGRGA  374 (543)
T ss_dssp             EETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTE-EEEEETTTTEEEEEEECSSSBCCTTCE
T ss_pred             EECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCe-EEEEECCCCeEEEeeccCCCCCCCCCc
Confidence            6778999999887542 222  33 3566788999999999876655 5778 9999999999988887532  332233


Q ss_pred             EEEeCCC-CCEEEEEe-CCCeEEEEEceec
Q 014977          266 SIALSPN-VQWLAVAS-DKGTVHIFSLRVR  293 (415)
Q Consensus       266 ~l~~spd-g~~l~s~s-~dg~i~vwd~~~~  293 (415)
                      .+ ++|+ +.+++++. .|++|.|||+.+.
T Consensus       375 ~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~  403 (543)
T 1nir_A          375 NF-VHPKYGPVWSTSHLGDGSISLIGTDPK  403 (543)
T ss_dssp             EE-EETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred             cc-CCCCCccEEEeccCCCceEEEEEeCCC
Confidence            33 4677 66666665 5899999999874

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.90  E-value=3.4e-22  Score=203.73  Aligned_cols=238  Identities=11%  Similarity=0.003  Sum_probs=176.1

Q ss_pred             CCceEEEEEeCCCCEEEEEe--CC-----cEEEEEccCCceeEEEeccCCC----------------------eeEEEEe
Q 014977           44 EIELISVSWNQDYGCFAAGT--SC-----GFRIYNCEPFKETFRRDLKSGG----------------------FRIVEML   94 (415)
Q Consensus        44 ~~~V~~l~~sp~g~~la~g~--d~-----~v~iw~~~~~~~~~~~~~~~~~----------------------~~~~~~~   94 (415)
                      ...|.+++|+|||++|++++  ++     .|++||+++.+.......+...                      ..+..+.
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            56799999999999999887  66     7999999886654433322222                      3467889


Q ss_pred             eeCCeEEEEecCCCCCCCCCeEEEEECCCC---CEEEEEEccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEe
Q 014977           95 FRCNILALVGAGDNSQYPPTKVIIWDDHQS---RCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIE  169 (415)
Q Consensus        95 ~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~---~~~~~~~~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~  169 (415)
                      |+|++..++.++.      +.|.+||+.++   +......+...+..++|+|||+.++  .++.|++||+.+++......
T Consensus       116 ~SpDg~~l~~~~~------~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~  189 (741)
T 2ecf_A          116 WSPDAQRLLFPLG------GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTA  189 (741)
T ss_dssp             ECTTSSEEEEEET------TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECCC
T ss_pred             ECCCCCEEEEEeC------CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEecc
Confidence            9999988887765      89999999988   5444334778899999999999887  78899999998887665443


Q ss_pred             ccCCCc--------------ceEEEecCCCceEEEEeCCccC---------------------------------eEEEE
Q 014977          170 TLANLR--------------GLCCLSHHSSTSVLACPGLQRG---------------------------------QVRIE  202 (415)
Q Consensus       170 ~~~~~~--------------~~~~~~~~~~~~~l~~~g~~dg---------------------------------~v~i~  202 (415)
                      .+...+              ....+.++|+++.|+++. .|+                                 .|.+|
T Consensus       190 ~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~-~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~  268 (741)
T 2ecf_A          190 DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYAR-IDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVI  268 (741)
T ss_dssp             CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEE-EECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEE
T ss_pred             CCccceeccccceeeeeccccccceEECCCCCEEEEEE-EcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEE
Confidence            322211              024456677777777743 332                                 56667


Q ss_pred             EcCC-cceEEEe---cCccceEEEEeCCCCCEEEEEeC-----CCcEEEEEECCCCcEEEEEecCCCcc---cEEEEEeC
Q 014977          203 HFGL-NMIKLIN---AHDSHIACFTLTLDGLLLATAST-----RGTLIRIFNTVDGTRLQEVRRGVDRA---EIYSIALS  270 (415)
Q Consensus       203 ~~~~-~~~~~~~---~~~~~i~~l~~sp~g~~l~s~s~-----dg~~I~vwd~~~~~~~~~~~~~~~~~---~v~~l~~s  270 (415)
                      +... .....+.   .|...+..++| |||++|++++.     +.. |++||+.+++....+..+ ...   .+..++|+
T Consensus       269 d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~-i~~~d~~~g~~~~~~~~~-~~~~~~~~~~~~~s  345 (741)
T 2ecf_A          269 SPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLD-LVEVTLASNQQRVLAHET-SPTWVPLHNSLRFL  345 (741)
T ss_dssp             CSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEE-EEEEETTTCCEEEEEEEE-CSSCCCCCSCCEEC
T ss_pred             ECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEE-EEEEECCCCceEEEEEcC-CCCcCCcCCceEEC
Confidence            7665 5544443   47788999999 99999887654     456 999999999887666542 111   34688999


Q ss_pred             CCCCEEEEEeCCCeEEEEEce
Q 014977          271 PNVQWLAVASDKGTVHIFSLR  291 (415)
Q Consensus       271 pdg~~l~s~s~dg~i~vwd~~  291 (415)
                      |||+++++++.||.++||.++
T Consensus       346 pdg~~~~~~~~~g~~~l~~~~  366 (741)
T 2ecf_A          346 DDGSILWSSERTGFQHLYRID  366 (741)
T ss_dssp             TTSCEEEEECTTSSCEEEEEC
T ss_pred             CCCeEEEEecCCCccEEEEEc
Confidence            999999999999988888876

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.90  E-value=2.9e-21  Score=183.24  Aligned_cols=226  Identities=15%  Similarity=0.094  Sum_probs=171.1

Q ss_pred             CCEEEEEe-C------CcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEE
Q 014977           56 YGCFAAGT-S------CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIG  128 (415)
Q Consensus        56 g~~la~g~-d------~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~  128 (415)
                      +..++.++ +      +.|++||++... ...  +..+...+.++.|+|++..++.++.+.  ....|++||+.+++...
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~~--l~~~~~~v~~~~~Spdg~~la~~s~~~--~~~~i~~~d~~tg~~~~  217 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGYN-QFV--VHRSPQPLMSPAWSPDGSKLAYVTFES--GRSALVIQTLANGAVRQ  217 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSCS-CEE--EEEESSCEEEEEECTTSSEEEEEECTT--SSCEEEEEETTTCCEEE
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCCC-CEE--EeCCCCcceeeEEcCCCCEEEEEEecC--CCcEEEEEECCCCcEEE
Confidence            55666555 3      689999998533 222  225667889999999998888777640  01499999999998876


Q ss_pred             EEEccCceeEEEEcCCeEEEE--e----CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccC--eEE
Q 014977          129 EFAFRSDVRSVKLSRDRIVVV--L----EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRG--QVR  200 (415)
Q Consensus       129 ~~~~~~~i~~l~~~~~~~~~~--~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg--~v~  200 (415)
                      ...+...+.+++|+||++.++  .    +..|++||+.+++. ..+..+..  .+..+.++|++..|++++..++  .|+
T Consensus       218 l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~--~~~~~~~spdg~~l~~~s~~~g~~~i~  294 (415)
T 2hqs_A          218 VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRS--NNTEPTWFPDSQNLAFTSDQAGRPQVY  294 (415)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSS--CEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred             eecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCC--cccceEECCCCCEEEEEECCCCCcEEE
Confidence            555888999999999998766  2    34699999988765 44544544  4566777788888887665556  555


Q ss_pred             EEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCC---CcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEE
Q 014977          201 IEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTR---GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLA  277 (415)
Q Consensus       201 i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d---g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~  277 (415)
                      +|+........+..+...+..++|+|+|++|++++.+   .. |++||+.+++.. .+..  +. .+.+++|+|||++|+
T Consensus       295 ~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~-i~~~d~~~~~~~-~l~~--~~-~~~~~~~spdg~~l~  369 (415)
T 2hqs_A          295 KVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQH-IAKQDLATGGVQ-VLSS--TF-LDETPSLAPNGTMVI  369 (415)
T ss_dssp             EEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEE-EEEEETTTCCEE-ECCC--SS-SCEEEEECTTSSEEE
T ss_pred             EEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceE-EEEEECCCCCEE-EecC--CC-CcCCeEEcCCCCEEE
Confidence            6777766666677778889999999999999988765   46 999999988874 4544  33 789999999999999


Q ss_pred             EEeCCC---eEEEEEceecc
Q 014977          278 VASDKG---TVHIFSLRVRV  294 (415)
Q Consensus       278 s~s~dg---~i~vwd~~~~~  294 (415)
                      +++.++   .|++||+..+.
T Consensus       370 ~~s~~~~~~~l~~~d~~g~~  389 (415)
T 2hqs_A          370 YSSSQGMGSVLNLVSTDGRF  389 (415)
T ss_dssp             EEEEETTEEEEEEEETTSCC
T ss_pred             EEEcCCCccEEEEEECCCCc
Confidence            888877   79999987443

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.89  E-value=2.4e-20  Score=171.11  Aligned_cols=231  Identities=13%  Similarity=0.081  Sum_probs=165.3

Q ss_pred             EEEeCCCCE-EEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeE-EEEecCCCCCCCCCeEEEEECCCCCE
Q 014977           50 VSWNQDYGC-FAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNIL-ALVGAGDNSQYPPTKVIIWDDHQSRC  126 (415)
Q Consensus        50 l~~sp~g~~-la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~~~~~~i~vwd~~~~~~  126 (415)
                      ..|.+++.+ ++++. ++.|.+||.++.+......  .+.... .+.|++++. ++++...+     +.|.+||+.+++.
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~-~~~~s~dg~~l~~~~~~~-----~~i~~~d~~~~~~   74 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQIT--LGYDFV-DTAITSDCSNVVVTSDFC-----QTLVQIETQLEPP   74 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEE--CCCCEE-EEEECSSSCEEEEEESTT-----CEEEEEECSSSSC
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEE--ccCCcc-eEEEcCCCCEEEEEeCCC-----CeEEEEECCCCce
Confidence            356666666 44555 8999999999876655444  334444 899999886 44444445     8999999999987


Q ss_pred             -EEEEEccCceeE-EEEcCCeEEEE--e-C-C--eEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCe
Q 014977          127 -IGEFAFRSDVRS-VKLSRDRIVVV--L-E-H--KIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQ  198 (415)
Q Consensus       127 -~~~~~~~~~i~~-l~~~~~~~~~~--~-d-~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~  198 (415)
                       ...+........ ++|+|++.+++  . + +  .|.+||+.+++.+..+..+.   ....+.++|+++++++++..++.
T Consensus        75 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~spdg~~l~~~~~~~~~  151 (331)
T 3u4y_A           75 KVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY---DAVGIAISPNGNGLILIDRSSAN  151 (331)
T ss_dssp             EEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT---TEEEEEECTTSSCEEEEEETTTT
T ss_pred             eEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC---CccceEECCCCCEEEEEecCCCc
Confidence             666664444455 99999998777  2 3 3  89999999999888776544   34566777777656555555677


Q ss_pred             -EEEEEcCCcc-e----EEEecCccceEEEEeCCCCCEEEEEe-CCCcEEEEEECCCCcE---EEEEecCCCcccEEEEE
Q 014977          199 -VRIEHFGLNM-I----KLINAHDSHIACFTLTLDGLLLATAS-TRGTLIRIFNTVDGTR---LQEVRRGVDRAEIYSIA  268 (415)
Q Consensus       199 -v~i~~~~~~~-~----~~~~~~~~~i~~l~~sp~g~~l~s~s-~dg~~I~vwd~~~~~~---~~~~~~~~~~~~v~~l~  268 (415)
                       |.+|+..... +    ............++|+|+|++|++++ .++. |++||+.+++.   +..+..   ...+..++
T Consensus       152 ~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~-v~v~d~~~~~~~~~~~~~~~---~~~~~~~~  227 (331)
T 3u4y_A          152 TVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNS-IGILETQNPENITLLNAVGT---NNLPGTIV  227 (331)
T ss_dssp             EEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTE-EEEEECSSTTSCEEEEEEEC---SSCCCCEE
T ss_pred             eEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCe-EEEEECCCCcccceeeeccC---CCCCceEE
Confidence             9988765321 1    12223455678999999999665554 5777 99999999988   777774   34678899


Q ss_pred             eCCCCCEEEEEe-CCCeEEEEEceeccc
Q 014977          269 LSPNVQWLAVAS-DKGTVHIFSLRVRVV  295 (415)
Q Consensus       269 ~spdg~~l~s~s-~dg~i~vwd~~~~~~  295 (415)
                      |+|||++|+++. .++.|.+||+++++.
T Consensus       228 ~spdg~~l~v~~~~~~~i~~~d~~~~~~  255 (331)
T 3u4y_A          228 VSRDGSTVYVLTESTVDVFNFNQLSGTL  255 (331)
T ss_dssp             ECTTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred             ECCCCCEEEEEEcCCCEEEEEECCCCce
Confidence            999999877655 477899999988764

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.88  E-value=1.1e-19  Score=167.03  Aligned_cols=227  Identities=11%  Similarity=0.107  Sum_probs=151.4

Q ss_pred             CEEEEE-e-CCcEEEEEccCCc-eeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECC--CCCE--EEE
Q 014977           57 GCFAAG-T-SCGFRIYNCEPFK-ETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH--QSRC--IGE  129 (415)
Q Consensus        57 ~~la~g-~-d~~v~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~--~~~~--~~~  129 (415)
                      ++++++ . ++.|++|+++..+ ......+ .+...+..+.|++++..++.++.+    ++.|.+|++.  +++.  +..
T Consensus         5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~----~~~v~~~~~~~~~~~~~~~~~   79 (343)
T 1ri6_A            5 QTVYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRP----EFRVLAYRIAPDDGALTFAAE   79 (343)
T ss_dssp             EEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETT----TTEEEEEEECTTTCCEEEEEE
T ss_pred             EEEEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecC----CCeEEEEEecCCCCceeeccc
Confidence            344444 5 9999999996322 2222222 445566778899988755554432    2899999987  5553  344


Q ss_pred             EEccCceeEEEEcCCeEEEE----eCCeEEEEEcC---CceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEE
Q 014977          130 FAFRSDVRSVKLSRDRIVVV----LEHKIYVYSFV---DLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIE  202 (415)
Q Consensus       130 ~~~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~  202 (415)
                      +.....+..++|+|++..++    .++.|.+||+.   ..+.+..+..+.   .+..+.+++++.++++++..++.|.+|
T Consensus        80 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~~v~~~  156 (343)
T 1ri6_A           80 SALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD---GCHSANISPDNRTLWVPALKQDRICLF  156 (343)
T ss_dssp             EECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCT---TBCCCEECTTSSEEEEEEGGGTEEEEE
T ss_pred             cccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCC---CceEEEECCCCCEEEEecCCCCEEEEE
Confidence            55455889999999998665    37899999994   334444444333   344455666777776655578999998


Q ss_pred             EcCC-cceE-----EEec-CccceEEEEeCCCCCEEEEEe-CCCcEEEEEECCC--CcE--EEEEecC----CCcccEEE
Q 014977          203 HFGL-NMIK-----LINA-HDSHIACFTLTLDGLLLATAS-TRGTLIRIFNTVD--GTR--LQEVRRG----VDRAEIYS  266 (415)
Q Consensus       203 ~~~~-~~~~-----~~~~-~~~~i~~l~~sp~g~~l~s~s-~dg~~I~vwd~~~--~~~--~~~~~~~----~~~~~v~~  266 (415)
                      +... ..+.     .+.. ....+..++|+|+|++|++++ .++. |.+||+..  ++.  ...+...    .....+..
T Consensus       157 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~-i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  235 (343)
T 1ri6_A          157 TVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSS-VDVWELKDPHGNIECVQTLDMMPENFSDTRWAAD  235 (343)
T ss_dssp             EECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTE-EEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEE
T ss_pred             EecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCE-EEEEEecCCCCcEEEEeeccccCccccccCCccc
Confidence            8765 3332     2232 345788899999999776555 7788 99999953  433  3333311    01235778


Q ss_pred             EEeCCCCCEEEEE-eCCCeEEEEEcee
Q 014977          267 IALSPNVQWLAVA-SDKGTVHIFSLRV  292 (415)
Q Consensus       267 l~~spdg~~l~s~-s~dg~i~vwd~~~  292 (415)
                      ++|+|+|++|+++ ..++.|.+|+++.
T Consensus       236 i~~s~dg~~l~v~~~~~~~i~v~d~~~  262 (343)
T 1ri6_A          236 IHITPDGRHLYACDRTASLITVFSVSE  262 (343)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             eEECCCCCEEEEEecCCCEEEEEEEcC
Confidence            9999999988754 4789999999974

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.88  E-value=1.2e-19  Score=167.79  Aligned_cols=238  Identities=12%  Similarity=0.083  Sum_probs=176.5

Q ss_pred             CCCCceEEEEEeCCCCEEEEEe--------CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeE-EEEecCCCCCCC
Q 014977           42 VDEIELISVSWNQDYGCFAAGT--------SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNIL-ALVGAGDNSQYP  112 (415)
Q Consensus        42 ~h~~~V~~l~~sp~g~~la~g~--------d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~~~  112 (415)
                      .....+..++|+|+++++++++        ++.|.+||.++.+.......   ......+.+++++. ++++...+    
T Consensus        38 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~v~~~~~----  110 (353)
T 3vgz_A           38 AVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN---DLKPFGATINNTTQTLWFGNTVN----  110 (353)
T ss_dssp             EEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE---SSCCCSEEEETTTTEEEEEETTT----
T ss_pred             hhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec---CCCcceEEECCCCCEEEEEecCC----
Confidence            3456788999999999998877        35799999988765544433   22355677888875 55565555    


Q ss_pred             CCeEEEEECCCCCEEEEEEccC----------ceeEEEEcCCeEEEE--e---CCeEEEEEcCCceeeeEEeccCCCcce
Q 014977          113 PTKVIIWDDHQSRCIGEFAFRS----------DVRSVKLSRDRIVVV--L---EHKIYVYSFVDLKLLHQIETLANLRGL  177 (415)
Q Consensus       113 ~~~i~vwd~~~~~~~~~~~~~~----------~i~~l~~~~~~~~~~--~---d~~i~iwd~~~~~~~~~~~~~~~~~~~  177 (415)
                       +.|.+||..+++.+..+....          .+.++.|+|++..++  .   ++.|.+||+.+++.+..+..+......
T Consensus       111 -~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~  189 (353)
T 3vgz_A          111 -SAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTG  189 (353)
T ss_dssp             -TEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCC
T ss_pred             -CEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccce
Confidence             899999999999988887321          278899999987655  2   688999999999988887644432333


Q ss_pred             EEEecCCCceEEEEeCCccCeEEEEEcCC-cceEEEec----CccceEEEEeCCCCCEEEEEeCC-CcEEEEEECCCCcE
Q 014977          178 CCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINA----HDSHIACFTLTLDGLLLATASTR-GTLIRIFNTVDGTR  251 (415)
Q Consensus       178 ~~~~~~~~~~~l~~~g~~dg~v~i~~~~~-~~~~~~~~----~~~~i~~l~~sp~g~~l~s~s~d-g~~I~vwd~~~~~~  251 (415)
                      +.  +++++..++++ ..++.|.+|+... +....+..    +...+..++|+|+|++|++++.+ +. |.+||+.+++.
T Consensus       190 ~~--~s~dg~~l~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~-v~~~d~~~~~~  265 (353)
T 3vgz_A          190 LA--LDSEGKRLYTT-NADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAE-VLVVDTRNGNI  265 (353)
T ss_dssp             CE--EETTTTEEEEE-CTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSE-EEEEETTTCCE
T ss_pred             EE--ECCCCCEEEEE-cCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCE-EEEEECCCCcE
Confidence            44  45556666664 4688999987655 34444443    45567889999999987777655 77 99999999999


Q ss_pred             EEEEecCCCcccEEEEEeCCCCCEEEEEe-CCCeEEEEEceeccc
Q 014977          252 LQEVRRGVDRAEIYSIALSPNVQWLAVAS-DKGTVHIFSLRVRVV  295 (415)
Q Consensus       252 ~~~~~~~~~~~~v~~l~~spdg~~l~s~s-~dg~i~vwd~~~~~~  295 (415)
                      +..+..+  .  ...++|+|+|++|+++. .++.|.+||+.+++.
T Consensus       266 ~~~~~~~--~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~  306 (353)
T 3vgz_A          266 LAKVAAP--E--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKV  306 (353)
T ss_dssp             EEEEECS--S--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEE
T ss_pred             EEEEEcC--C--CceEEECCCCCEEEEEECCCCeEEEEECCCCeE
Confidence            8888753  2  25699999999766655 689999999987763

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.87  E-value=6e-20  Score=179.75  Aligned_cols=248  Identities=10%  Similarity=0.057  Sum_probs=189.3

Q ss_pred             CCCceEEEEEeC----CCCEEEEEe--CCcEEEEEccCCceeEEEeccC---------CCeeEEEEeeeCC-eEEEEecC
Q 014977           43 DEIELISVSWNQ----DYGCFAAGT--SCGFRIYNCEPFKETFRRDLKS---------GGFRIVEMLFRCN-ILALVGAG  106 (415)
Q Consensus        43 h~~~V~~l~~sp----~g~~la~g~--d~~v~iw~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~-~~~l~s~~  106 (415)
                      +...+..++|+|    ||++|++++  ++.|.|||..+.+.+.......         ....+..+.++++ ..++++..
T Consensus       220 ~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~  299 (543)
T 1nir_A          220 IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK  299 (543)
T ss_dssp             CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred             cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC
Confidence            455689999999    999999887  8999999998877655543311         1236778888885 46667766


Q ss_pred             CCCCCCCCeEEEEECCCCCEEE--EEEccCceeEEEEcCCeEEEE----eCCeEEEEEcCCceeeeEEeccCCC--cceE
Q 014977          107 DNSQYPPTKVIIWDDHQSRCIG--EFAFRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANL--RGLC  178 (415)
Q Consensus       107 ~d~~~~~~~i~vwd~~~~~~~~--~~~~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~  178 (415)
                      .+     +.|.+||+.+.+.+.  .+.+...+.++.|+|++++++    .+++|.+||+.+++++..+.....+  ....
T Consensus       300 ~~-----g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~  374 (543)
T 1nir_A          300 ET-----GKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGA  374 (543)
T ss_dssp             TT-----TEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCE
T ss_pred             CC-----CeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCc
Confidence            66     999999998876544  555777889999999998655    4789999999999999888753221  1233


Q ss_pred             EEecCCC-ceEEEEeCCccCeEEEEEcC--------CcceEEEecCccceEEEEeCCCCCEEEEEe-------CCCcEEE
Q 014977          179 CLSHHSS-TSVLACPGLQRGQVRIEHFG--------LNMIKLINAHDSHIACFTLTLDGLLLATAS-------TRGTLIR  242 (415)
Q Consensus       179 ~~~~~~~-~~~l~~~g~~dg~v~i~~~~--------~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s-------~dg~~I~  242 (415)
                      .+. +|+ +.++++....+++|.+|+..        .+.++.+..|...+..++++|+|++|++++       .++. |.
T Consensus       375 ~~~-~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~-v~  452 (543)
T 1nir_A          375 NFV-HPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQS-VA  452 (543)
T ss_dssp             EEE-ETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTC-EE
T ss_pred             ccC-CCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCce-EE
Confidence            342 444 55555533368999998875        467889999998899999999999999987       2668 99


Q ss_pred             EEECCCCcEE-EEEec------CCCcccEEEEEeCCCCCEEEEEe-----CCCeEEEEEceecccCC
Q 014977          243 IFNTVDGTRL-QEVRR------GVDRAEIYSIALSPNVQWLAVAS-----DKGTVHIFSLRVRVVGE  297 (415)
Q Consensus       243 vwd~~~~~~~-~~~~~------~~~~~~v~~l~~spdg~~l~s~s-----~dg~i~vwd~~~~~~~~  297 (415)
                      |||+.+++.. ..+..      ..+...+..+.|+|+|+.|+++.     .|+.|.|||.++++...
T Consensus       453 v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~  519 (543)
T 1nir_A          453 VFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKA  519 (543)
T ss_dssp             EEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEE
T ss_pred             EEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEE
Confidence            9999999876 44421      11456899999999999988763     47999999999998764

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.87  E-value=1.7e-20  Score=172.05  Aligned_cols=242  Identities=10%  Similarity=0.008  Sum_probs=176.3

Q ss_pred             ceEEEEEeCCCCEEEEEe--CCcEEEEEccCCceeEEEeccC---CCeeEEEEeeeCCeEEEEecCC-----CCCC--CC
Q 014977           46 ELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKS---GGFRIVEMLFRCNILALVGAGD-----NSQY--PP  113 (415)
Q Consensus        46 ~V~~l~~sp~g~~la~g~--d~~v~iw~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~s~~~-----d~~~--~~  113 (415)
                      .+..++|+|+|++++++.  ++.|.+||+.+.+......+..   +...+..+.|++++..++.+..     ...+  .+
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~  114 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP  114 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence            478899999998776554  7899999998866554443322   1124456789998855555430     0000  12


Q ss_pred             CeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEe
Q 014977          114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP  192 (415)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  192 (415)
                      +.|.+||+.+++.+..+.....+.+++|+|++..++ .++.|++||+.+++.+..+..+..... .  .+++++..++++
T Consensus       115 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~-~--~~s~dg~~l~~~  191 (337)
T 1pby_B          115 TRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAE-T--YAQPDVLAVWNQ  191 (337)
T ss_dssp             CEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTTTT-T--BCCCBCCCCCCC
T ss_pred             ceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEeCCeEEEEECCCCcEeeeeeccccCCC-c--eeCCCccEEeee
Confidence            899999999999888888777788999999998666 789999999999988877765431111 2  345555555544


Q ss_pred             CCccCe-----------------------EEEEEcCCcceE--EEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECC
Q 014977          193 GLQRGQ-----------------------VRIEHFGLNMIK--LINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTV  247 (415)
Q Consensus       193 g~~dg~-----------------------v~i~~~~~~~~~--~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~  247 (415)
                      +..++.                       |.+|+.......  .+..+...+..++|+|+|++|+++  ++. |++||+.
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~-v~~~d~~  268 (337)
T 1pby_B          192 HESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNV-LESFDLE  268 (337)
T ss_dssp             CTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESE-EEEEETT
T ss_pred             ccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCe-EEEEECC
Confidence            444443                       456666554432  234566678899999999999888  678 9999999


Q ss_pred             CCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977          248 DGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       248 ~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                      +++.+..+..+   ..+.+++|+|+|++|++++.++.|++||+++++..
T Consensus       269 ~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~  314 (337)
T 1pby_B          269 KNASIKRVPLP---HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK  314 (337)
T ss_dssp             TTEEEEEEECS---SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred             CCcCcceecCC---CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEE
Confidence            99988887742   35789999999999999999999999999988754

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.87  E-value=4.3e-20  Score=169.85  Aligned_cols=240  Identities=12%  Similarity=0.113  Sum_probs=168.2

Q ss_pred             CCCCceEEEEEeCCCCEEEEEe-C-CcEEEEEcc--CCceeEEEeccCCCeeEEEEeeeCCeEEEE-ecCCCCCCCCCeE
Q 014977           42 VDEIELISVSWNQDYGCFAAGT-S-CGFRIYNCE--PFKETFRRDLKSGGFRIVEMLFRCNILALV-GAGDNSQYPPTKV  116 (415)
Q Consensus        42 ~h~~~V~~l~~sp~g~~la~g~-d-~~v~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~d~~~~~~~i  116 (415)
                      .|...+.+++|+|+|++|+++. + +.|.+|+++  +........+..+. .+..+.|++++..++ ++..+     +.|
T Consensus        35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~-----~~i  108 (343)
T 1ri6_A           35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNA-----GNV  108 (343)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTT-----TEE
T ss_pred             ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCC-----CeE
Confidence            4667789999999999988888 4 899999998  43332222332223 677888999987554 44444     899


Q ss_pred             EEEECC---CCCEEEEEEccCceeEEEEcCCeEEEE----eCCeEEEEEcCC-ceeee----EEeccCCCcceEEEecCC
Q 014977          117 IIWDDH---QSRCIGEFAFRSDVRSVKLSRDRIVVV----LEHKIYVYSFVD-LKLLH----QIETLANLRGLCCLSHHS  184 (415)
Q Consensus       117 ~vwd~~---~~~~~~~~~~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~-~~~~~----~~~~~~~~~~~~~~~~~~  184 (415)
                      .+||+.   +.+.+..+.....+.+++|+|++..++    .++.|++||+.+ ++...    .+..+. ......+.+++
T Consensus       109 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p  187 (343)
T 1ri6_A          109 SVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVE-GAGPRHMVFHP  187 (343)
T ss_dssp             EEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECST-TCCEEEEEECT
T ss_pred             EEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCC-CCCcceEEECC
Confidence            999984   334455555566799999999987655    479999999987 54432    222221 12455677778


Q ss_pred             CceEEEEeCCccCeEEEEEcCC--cc---eEEEecC------ccceEEEEeCCCCCEEEEE-eCCCcEEEEEECC--CC-
Q 014977          185 STSVLACPGLQRGQVRIEHFGL--NM---IKLINAH------DSHIACFTLTLDGLLLATA-STRGTLIRIFNTV--DG-  249 (415)
Q Consensus       185 ~~~~l~~~g~~dg~v~i~~~~~--~~---~~~~~~~------~~~i~~l~~sp~g~~l~s~-s~dg~~I~vwd~~--~~-  249 (415)
                      ++.++++++..++.|.+|+...  ..   ...+...      ...+..++|+|+|++|+++ ..++. |.+||+.  ++ 
T Consensus       188 dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~-i~v~d~~~~~~~  266 (343)
T 1ri6_A          188 NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASL-ITVFSVSEDGSV  266 (343)
T ss_dssp             TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTE-EEEEEECTTSCC
T ss_pred             CCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCE-EEEEEEcCCCCc
Confidence            8887766676889999998753  22   2222211      2356689999999987754 46888 9999998  33 


Q ss_pred             -cEEEEEecCCCcccEEEEEeCCCCCEEEEEe-CCCeEEEEEcee
Q 014977          250 -TRLQEVRRGVDRAEIYSIALSPNVQWLAVAS-DKGTVHIFSLRV  292 (415)
Q Consensus       250 -~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s-~dg~i~vwd~~~  292 (415)
                       +.+..+..  +. .+..++|+|+|++|++++ .++.|.+|+++.
T Consensus       267 ~~~~~~~~~--~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~  308 (343)
T 1ri6_A          267 LSKEGFQPT--ET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIVG  308 (343)
T ss_dssp             EEEEEEEEC--SS-SCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred             eEEeeeecC--CC-ccceEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence             34444554  22 388999999999988887 579999997763

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.87  E-value=4e-21  Score=195.31  Aligned_cols=240  Identities=10%  Similarity=0.032  Sum_probs=168.9

Q ss_pred             CceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCe---eEEEEeeeCCeEEEEecCCCCCC----CCCeEE
Q 014977           45 IELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGF---RIVEMLFRCNILALVGAGDNSQY----PPTKVI  117 (415)
Q Consensus        45 ~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~s~~~d~~~----~~~~i~  117 (415)
                      ..+.+++|+|||++++++.|+.|++||+++++.....  ..+..   .+..+.|+|++..++.+..+...    .++.|.
T Consensus        17 ~~~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~--~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~   94 (723)
T 1xfd_A           17 IHDPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLI--EGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYV   94 (723)
T ss_dssp             CCCCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEE--CTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEE
T ss_pred             ccccccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEe--ccccccccccceEEECCCCCEEEEEecCccceeecceeeEE
Confidence            3467889999999887744999999999886654332  23332   37889999999888877553111    237899


Q ss_pred             EEECCCCCEEEEEE----ccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCc----------------
Q 014977          118 IWDDHQSRCIGEFA----FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLR----------------  175 (415)
Q Consensus       118 vwd~~~~~~~~~~~----~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~----------------  175 (415)
                      +||+.+++. ..+.    +...+..++|+|||+.++  .++.|++||+.+++.......+...+                
T Consensus        95 ~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~  173 (723)
T 1xfd_A           95 LSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILK  173 (723)
T ss_dssp             EEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSS
T ss_pred             EEECCCCce-EeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEecc
Confidence            999999876 3333    233488999999998877  78999999998887766554433222                


Q ss_pred             ceEEEecCCCceEEEEeCCcc---------------------------------CeEEEEEcCCcc-eEEEecC------
Q 014977          176 GLCCLSHHSSTSVLACPGLQR---------------------------------GQVRIEHFGLNM-IKLINAH------  215 (415)
Q Consensus       176 ~~~~~~~~~~~~~l~~~g~~d---------------------------------g~v~i~~~~~~~-~~~~~~~------  215 (415)
                      ....+.++|+++.|+++...+                                 ..|++|+..... ...+..+      
T Consensus       174 ~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~  253 (723)
T 1xfd_A          174 THIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMR  253 (723)
T ss_dssp             SSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGS
T ss_pred             CcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCc
Confidence            125677888888888754221                                 267778876654 3555544      


Q ss_pred             ccceEEEEeCCCCCEEEEEeCC----CcEEEEEECCCCcEEEEEecCCCcccE----EEEEeCCCCCEEEE--EeCCC--
Q 014977          216 DSHIACFTLTLDGLLLATASTR----GTLIRIFNTVDGTRLQEVRRGVDRAEI----YSIALSPNVQWLAV--ASDKG--  283 (415)
Q Consensus       216 ~~~i~~l~~sp~g~~l~s~s~d----g~~I~vwd~~~~~~~~~~~~~~~~~~v----~~l~~spdg~~l~s--~s~dg--  283 (415)
                      ...+..++|+|||++|++....    .. |++||+.+++....+... +...+    ..++|+|||+.|+.  ...++  
T Consensus       254 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~-i~~~d~~~g~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~  331 (723)
T 1xfd_A          254 EYYITMVKWATSTKVAVTWLNRAQNVSI-LTLCDATTGVCTKKHEDE-SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGR  331 (723)
T ss_dssp             SEEEEEEEESSSSEEEEEEEETTSCEEE-EEEEETTTCCEEEEEEEE-CSSCCCCCCCCCEECTTSCSEEEEEEECCSSS
T ss_pred             cceeEEEEEeCCCeEEEEEEcCCCCeEE-EEEEeCCCCcceEEEEec-cCCEEeccCCCceEcCCCCeEEEEEecccCCC
Confidence            5678999999999988776532    45 999999999877665432 22333    37899999998775  45666  


Q ss_pred             ----eEEEEE
Q 014977          284 ----TVHIFS  289 (415)
Q Consensus       284 ----~i~vwd  289 (415)
                          .|++||
T Consensus       332 ~~~~~l~~~d  341 (723)
T 1xfd_A          332 GKFYHITVSS  341 (723)
T ss_dssp             SCEEEEEEEC
T ss_pred             cceeEEEEEe
Confidence                455666

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.87  E-value=1.2e-19  Score=166.48  Aligned_cols=244  Identities=10%  Similarity=0.097  Sum_probs=170.7

Q ss_pred             CCCceEEEEEeCCCCEEEEEe--CCcEEEEEccCCce-eEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCC--eEE
Q 014977           43 DEIELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKE-TFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPT--KVI  117 (415)
Q Consensus        43 h~~~V~~l~~sp~g~~la~g~--d~~v~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~--~i~  117 (415)
                      +...+ .++|+|+|++++++.  ++.|.+||.++.+. ...  +..+......+.|++++..+++...+    .+  .|.
T Consensus        39 ~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~--~~~~~~~~~~~~~s~dg~~l~~~~~~----~~~~~i~  111 (331)
T 3u4y_A           39 GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVA--IQEGQSSMADVDITPDDQFAVTVTGL----NHPFNMQ  111 (331)
T ss_dssp             CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEE--EEECSSCCCCEEECTTSSEEEECCCS----SSSCEEE
T ss_pred             cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEe--cccCCCCccceEECCCCCEEEEecCC----CCcccEE
Confidence            34556 999999999776665  88999999988664 322  22333333338899998877744432    12  899


Q ss_pred             EEECCCCCEEEEEEccCceeEEEEcCCeEEEE----eCCe-EEEEEcCCceeeeEE--eccCCCcceEEEecCCCceEEE
Q 014977          118 IWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV----LEHK-IYVYSFVDLKLLHQI--ETLANLRGLCCLSHHSSTSVLA  190 (415)
Q Consensus       118 vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~----~d~~-i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~  190 (415)
                      +||+.+++.+..+.......+++|+|+++.++    .++. |.+|++.....+...  ...........+.+++++.+++
T Consensus       112 v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~  191 (331)
T 3u4y_A          112 SYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAF  191 (331)
T ss_dssp             EEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEE
T ss_pred             EEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEE
Confidence            99999999998888777789999999997444    3467 999998754332111  1001112456677788887776


Q ss_pred             EeCCccCeEEEEEcCC-cc---eEEEecCccceEEEEeCCCCCEEEEEeC-CCcEEEEEECCCCcE--EEEEecC--CCc
Q 014977          191 CPGLQRGQVRIEHFGL-NM---IKLINAHDSHIACFTLTLDGLLLATAST-RGTLIRIFNTVDGTR--LQEVRRG--VDR  261 (415)
Q Consensus       191 ~~g~~dg~v~i~~~~~-~~---~~~~~~~~~~i~~l~~sp~g~~l~s~s~-dg~~I~vwd~~~~~~--~~~~~~~--~~~  261 (415)
                      +++..++.|.+|+... +.   +..+. ....+..++|+|+|++|++++. ++. |.+||+.+++.  +..+...  .+.
T Consensus       192 v~~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~-i~~~d~~~~~~~~~~~~~~~~~~~~  269 (331)
T 3u4y_A          192 VANLIGNSIGILETQNPENITLLNAVG-TNNLPGTIVVSRDGSTVYVLTESTVD-VFNFNQLSGTLSFVKSFGHGLLIDP  269 (331)
T ss_dssp             EEETTTTEEEEEECSSTTSCEEEEEEE-CSSCCCCEEECTTSSEEEEECSSEEE-EEEEETTTTEEEEEEEEECCCCCCC
T ss_pred             EEeCCCCeEEEEECCCCcccceeeecc-CCCCCceEEECCCCCEEEEEEcCCCE-EEEEECCCCceeeecccccccccCC
Confidence            6677789999988764 44   45555 3466789999999997776654 666 99999998877  4444432  112


Q ss_pred             c---cEEEEEeCCCCCEEEEEeC-CCeEEEEEceeccc
Q 014977          262 A---EIYSIALSPNVQWLAVASD-KGTVHIFSLRVRVV  295 (415)
Q Consensus       262 ~---~v~~l~~spdg~~l~s~s~-dg~i~vwd~~~~~~  295 (415)
                      .   ....++|+|||++|++++. ++.|.+||+..+..
T Consensus       270 ~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~  307 (331)
T 3u4y_A          270 RPLFGANQMALNKTETKLFISANISRELKVFTISGKVV  307 (331)
T ss_dssp             GGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred             CCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence            2   2355899999998876655 56999999987664

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.87  E-value=9.8e-21  Score=187.65  Aligned_cols=230  Identities=10%  Similarity=0.069  Sum_probs=164.7

Q ss_pred             CCceEEEEEeCCCCEEEEEe--CCcEEEEEccCCceeEEEeccCCC-eeEEEEeeeCCeEEEEecCCCCCCCCCeEEEE-
Q 014977           44 EIELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGG-FRIVEMLFRCNILALVGAGDNSQYPPTKVIIW-  119 (415)
Q Consensus        44 ~~~V~~l~~sp~g~~la~g~--d~~v~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vw-  119 (415)
                      ..+|++++|+|||++||.++  ++.++||++++.+. ..  +..+. ..+..+.|+|+ .+++++..+.  .+....+| 
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~--lt~~~~~~~~~~~~spd-~~l~~~~~~~--g~~~~~l~~   94 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VK--LNREPINSVLDPHYGVG-RVILVRDVSK--GAEQHALFK   94 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EE--CCSSCCSEECEECTTCS-EEEEEEECST--TSCCEEEEE
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-Ee--eecccccccccccCCCC-eEEEEeccCC--CCcceEEEE
Confidence            45699999999999999876  99999999865432 22  22444 57888999999 5655444200  01444554 


Q ss_pred             -EC-CCCCEEEEEEccCceeEEEEcCCeE--EEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeC
Q 014977          120 -DD-HQSRCIGEFAFRSDVRSVKLSRDRI--VVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG  193 (415)
Q Consensus       120 -d~-~~~~~~~~~~~~~~i~~l~~~~~~~--~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  193 (415)
                       +. ..+... .+.....+...+|+|++.  .++  .++.+.+||+.+++.......+.     ..+.++|+|++|++++
T Consensus        95 ~~~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~-----~~~~~spDG~~la~~~  168 (582)
T 3o4h_A           95 VNTSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG-----FGFVSDIRGDLIAGLG  168 (582)
T ss_dssp             EETTSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS-----CEEEEEEETTEEEEEE
T ss_pred             EeccCCCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC-----ceEEECCCCCEEEEEE
Confidence             44 123332 343333444667777764  444  45666699998887655444332     4555666778888644


Q ss_pred             Ccc----CeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCC--cEEEEEECCCCcEEEEEecCCCcccEEEE
Q 014977          194 LQR----GQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRG--TLIRIFNTVDGTRLQEVRRGVDRAEIYSI  267 (415)
Q Consensus       194 ~~d----g~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg--~~I~vwd~~~~~~~~~~~~~~~~~~v~~l  267 (415)
                       .+    +.|++|+........+..|...+..++|+|||++|+++..++  . |++||+.+++.. .+..  +...+..+
T Consensus       169 -~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~-i~~~d~~~~~~~-~~~~--~~~~~~~~  243 (582)
T 3o4h_A          169 -FFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREAR-LVTVDPRDGSVE-DLEL--PSKDFSSY  243 (582)
T ss_dssp             -EEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEE-EEEECTTTCCEE-ECCC--SCSHHHHH
T ss_pred             -EcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeE-EEEEcCCCCcEE-EccC--CCcChhhh
Confidence             34    678888887777778888999999999999999999888888  7 999999998877 5554  55556556


Q ss_pred             E--------eCCCCCEEEEEeCCCeEEEEEc
Q 014977          268 A--------LSPNVQWLAVASDKGTVHIFSL  290 (415)
Q Consensus       268 ~--------~spdg~~l~s~s~dg~i~vwd~  290 (415)
                      +        |+|||.++++++.|+++++|++
T Consensus       244 ~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          244 RPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             CCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             hhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence            6        9999999999999999999999

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.87  E-value=1.3e-20  Score=169.30  Aligned_cols=234  Identities=7%  Similarity=-0.110  Sum_probs=171.2

Q ss_pred             CCCCCCceEEEEEeCCCCEEEEEeCCcEEEEEccC-CceeEEEeccCC-CeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977           40 SDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEP-FKETFRRDLKSG-GFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (415)
Q Consensus        40 ~~~h~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~  117 (415)
                      ...|...|.+++|+|+|++|+++.++.|.+|++++ .+....  ...+ ...+.++.|++++..++.+..+.. ....|.
T Consensus        37 ~~~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~--~~~~~~~~~~~~~~spdg~~l~~~~~~~~-~~~~l~  113 (297)
T 2ojh_A           37 VWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKV--DTGFATICNNDHGISPDGALYAISDKVEF-GKSAIY  113 (297)
T ss_dssp             EEEESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEEC--CCTTCCCBCSCCEECTTSSEEEEEECTTT-SSCEEE
T ss_pred             eccCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEe--ccccccccccceEECCCCCEEEEEEeCCC-CcceEE
Confidence            45678899999999999999999999999999987 554322  2233 356677899999887777663200 114555


Q ss_pred             EEECCCCCEEEEEEccCceeEEEEcCCeEEEE----eCCeEEEEEc--CCceeeeEEeccCCCcceEEEecCCCceEEEE
Q 014977          118 IWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV----LEHKIYVYSF--VDLKLLHQIETLANLRGLCCLSHHSSTSVLAC  191 (415)
Q Consensus       118 vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~----~d~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  191 (415)
                      +|+..+++ ...+.....+..++|+|++..++    .++.+++|++  .+++ ...+..+..  .+..+.+++++..+++
T Consensus       114 ~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~--~~~~~~~s~dg~~l~~  189 (297)
T 2ojh_A          114 LLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV-ETRLTHGEG--RNDGPDYSPDGRWIYF  189 (297)
T ss_dssp             EEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC-EEECCCSSS--CEEEEEECTTSSEEEE
T ss_pred             EEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCc-ceEcccCCC--ccccceECCCCCEEEE
Confidence            66656555 34455455689999999998665    5888888886  3333 334444443  4566777778888877


Q ss_pred             eCCccCeEEEEEc--CCcceEEEecCccceEEEEeCCCCCEEEEEeCC-----------CcEEEEEECCCCcEEE--EEe
Q 014977          192 PGLQRGQVRIEHF--GLNMIKLINAHDSHIACFTLTLDGLLLATASTR-----------GTLIRIFNTVDGTRLQ--EVR  256 (415)
Q Consensus       192 ~g~~dg~v~i~~~--~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d-----------g~~I~vwd~~~~~~~~--~~~  256 (415)
                      ++..++.+.+|..  .......+..|...+..++|+|+|++|++++.+           +. |++||+.+++...  .+.
T Consensus       190 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~-l~~~d~~~~~~~~~~~~~  268 (297)
T 2ojh_A          190 NSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVR-VQLMDMDGGNVETLFDLF  268 (297)
T ss_dssp             EECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEE-EEEEETTSCSCEEEEEEE
T ss_pred             EecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceE-EEEEecCCCCceeeeccC
Confidence            6666888888765  456677778888889999999999999888765           56 9999998886543  333


Q ss_pred             cCCCcccEEEEEeCCCCCEEEEEeCCC
Q 014977          257 RGVDRAEIYSIALSPNVQWLAVASDKG  283 (415)
Q Consensus       257 ~~~~~~~v~~l~~spdg~~l~s~s~dg  283 (415)
                      .  +...+..++|+|++++|++++.+.
T Consensus       269 ~--~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          269 G--GQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             E--STTTSCSCCBCTTSSEEEEEEECC
T ss_pred             C--CCcccccceECCCCCEEEEEEecc
Confidence            4  666889999999999998887654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.86  E-value=1.1e-19  Score=168.02  Aligned_cols=240  Identities=13%  Similarity=0.145  Sum_probs=162.3

Q ss_pred             CCCceEEEEEeCCCCEEEEEe---CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecC-CCCCCCCCeEEE
Q 014977           43 DEIELISVSWNQDYGCFAAGT---SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAG-DNSQYPPTKVII  118 (415)
Q Consensus        43 h~~~V~~l~~sp~g~~la~g~---d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~~~~~~i~v  118 (415)
                      +...+..++|+|||++++++.   ++.|.+|++++........+..+...+..++|++++..++.++ .+     +.|.+
T Consensus        38 ~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~-----~~v~v  112 (347)
T 3hfq_A           38 ATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHK-----GTAEV  112 (347)
T ss_dssp             ECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTT-----TEEEE
T ss_pred             ccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCC-----CEEEE
Confidence            446677899999999444443   4789999997654333222223455567788999987555554 44     89999


Q ss_pred             EECCC-CC--EEEEEEcc----------CceeEEEEcCCeEEEE---eCCeEEEEEcC-CceeeeE--EeccCCCcceEE
Q 014977          119 WDDHQ-SR--CIGEFAFR----------SDVRSVKLSRDRIVVV---LEHKIYVYSFV-DLKLLHQ--IETLANLRGLCC  179 (415)
Q Consensus       119 wd~~~-~~--~~~~~~~~----------~~i~~l~~~~~~~~~~---~d~~i~iwd~~-~~~~~~~--~~~~~~~~~~~~  179 (415)
                      |++.. +.  .+..+.+.          ..+.+++|+|++++++   .++.|++|++. +++....  +.... ......
T Consensus       113 ~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-g~~p~~  191 (347)
T 3hfq_A          113 MKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEA-GFGPRH  191 (347)
T ss_dssp             EEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCT-TCCEEE
T ss_pred             EEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCC-CCCCce
Confidence            99853 33  23333322          2478899999998555   47899999998 5543322  22211 123455


Q ss_pred             EecCCCceEEEEeCCccCeEEEEEcCC--cc---eEEEecCc------cceEEEEeCCCCCEEE-EEeCCCcEEEEEECC
Q 014977          180 LSHHSSTSVLACPGLQRGQVRIEHFGL--NM---IKLINAHD------SHIACFTLTLDGLLLA-TASTRGTLIRIFNTV  247 (415)
Q Consensus       180 ~~~~~~~~~l~~~g~~dg~v~i~~~~~--~~---~~~~~~~~------~~i~~l~~sp~g~~l~-s~s~dg~~I~vwd~~  247 (415)
                      +.++|+++++++++..++.|.+|+...  ..   +..+....      ..+..++|+|+|++|+ +...++. |.+||+.
T Consensus       192 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~-v~v~~~~  270 (347)
T 3hfq_A          192 LVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNT-LAVFAVT  270 (347)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTE-EEEEEEC
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCE-EEEEEEC
Confidence            777778887777677789999987653  22   22333222      3578899999999875 5556788 9999997


Q ss_pred             C-C--cEEEEEecCCCcccEEEEEeCCCCCEEEEEeCC-CeEEEEEce
Q 014977          248 D-G--TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK-GTVHIFSLR  291 (415)
Q Consensus       248 ~-~--~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d-g~i~vwd~~  291 (415)
                      . +  +.+..+..  +...+..++|+|||++|++++.+ +.|.+|+++
T Consensus       271 ~~g~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          271 ADGHLTLIQQIST--EGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             GGGCEEEEEEEEC--SSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CCCcEEEeEEEec--CCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence            3 2  44445554  34467899999999998888765 899999665

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.86  E-value=5.3e-20  Score=165.20  Aligned_cols=215  Identities=10%  Similarity=0.007  Sum_probs=162.9

Q ss_pred             CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCC-CCEEEEEE-c-cCceeEEE
Q 014977           64 SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ-SRCIGEFA-F-RSDVRSVK  140 (415)
Q Consensus        64 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~-~~~~~~~~-~-~~~i~~l~  140 (415)
                      ++.|++||+.+.+....   ..+...+.++.|+|++..++.+..      +.|.+||+.+ ++...... + ...+.+++
T Consensus        21 ~~~i~~~d~~~~~~~~~---~~~~~~v~~~~~spdg~~l~~~~~------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~   91 (297)
T 2ojh_A           21 RSSIEIFNIRTRKMRVV---WQTPELFEAPNWSPDGKYLLLNSE------GLLYRLSLAGDPSPEKVDTGFATICNNDHG   91 (297)
T ss_dssp             CEEEEEEETTTTEEEEE---EEESSCCEEEEECTTSSEEEEEET------TEEEEEESSSCCSCEECCCTTCCCBCSCCE
T ss_pred             ceeEEEEeCCCCceeee---ccCCcceEeeEECCCCCEEEEEcC------CeEEEEeCCCCCCceEeccccccccccceE
Confidence            88999999987654322   245667889999999988888763      8999999999 87766555 3 46789999


Q ss_pred             EcCCeEEEE--e-----CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEc--CCcceEE
Q 014977          141 LSRDRIVVV--L-----EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHF--GLNMIKL  211 (415)
Q Consensus       141 ~~~~~~~~~--~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~--~~~~~~~  211 (415)
                      |+|++..++  .     ...|.+|++.+++ ...+..+.   ....+.++|++..+++++..++.++||..  .......
T Consensus        92 ~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~---~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~  167 (297)
T 2ojh_A           92 ISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL---PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETR  167 (297)
T ss_dssp             ECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS---SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred             ECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC---CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceE
Confidence            999998887  2     2455556655544 33343332   25556777788888766778898999774  4456667


Q ss_pred             EecCccceEEEEeCCCCCEEEEEe-CCCcEEEEEECC-CCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCC-------
Q 014977          212 INAHDSHIACFTLTLDGLLLATAS-TRGTLIRIFNTV-DGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK-------  282 (415)
Q Consensus       212 ~~~~~~~i~~l~~sp~g~~l~s~s-~dg~~I~vwd~~-~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d-------  282 (415)
                      +..+...+.+++|+|+|++|+.++ .++. ++||++. .+..+..+..  +...+..++|+|+|++|++++.+       
T Consensus       168 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~-~~i~~~~~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~  244 (297)
T 2ojh_A          168 LTHGEGRNDGPDYSPDGRWIYFNSSRTGQ-MQIWRVRVDGSSVERITD--SAYGDWFPHPSPSGDKVVFVSYDADVFDHP  244 (297)
T ss_dssp             CCCSSSCEEEEEECTTSSEEEEEECTTSS-CEEEEEETTSSCEEECCC--CSEEEEEEEECTTSSEEEEEEEETTCCSCC
T ss_pred             cccCCCccccceECCCCCEEEEEecCCCC-ccEEEECCCCCCcEEEec--CCcccCCeEECCCCCEEEEEEcCCCCCccc
Confidence            777888999999999999887766 5888 9999886 5556666665  56789999999999999988776       


Q ss_pred             ----CeEEEEEceecc
Q 014977          283 ----GTVHIFSLRVRV  294 (415)
Q Consensus       283 ----g~i~vwd~~~~~  294 (415)
                          +.|++||+++++
T Consensus       245 ~~~~~~l~~~d~~~~~  260 (297)
T 2ojh_A          245 RDLDVRVQLMDMDGGN  260 (297)
T ss_dssp             SSEEEEEEEEETTSCS
T ss_pred             ccCceEEEEEecCCCC
Confidence                569999998765

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.86  E-value=1e-19  Score=166.86  Aligned_cols=260  Identities=11%  Similarity=0.053  Sum_probs=181.8

Q ss_pred             CEEEEEe-CCcEEEEEccCCceeEEEeccCCCe-eEEEEeeeCCe-EEEEecCCCCCCCCCeEEEEECCCCCEEEEEEcc
Q 014977           57 GCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGF-RIVEMLFRCNI-LALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFR  133 (415)
Q Consensus        57 ~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~  133 (415)
                      ++|+++. ++.|.+||..+.+......+ .+.. .+..+.|++++ .++++...+     +.|.+||+.+++.+..+...
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~v~~~~~-----~~v~~~d~~~~~~~~~~~~~   75 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITI-ADAGPTPMVPMVAPGGRIAYATVNKS-----ESLVKIDLVTGETLGRIDLS   75 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEEC-TTCTTCCCCEEECTTSSEEEEEETTT-----TEEEEEETTTCCEEEEEECC
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEc-CCCCCCccceEEcCCCCEEEEEeCCC-----CeEEEEECCCCCeEeeEEcC
Confidence            4677777 99999999988665544433 2211 35678899988 455666655     89999999999998888744


Q ss_pred             C------ceeEEEEcCCeEEEE-e--------------CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEe
Q 014977          134 S------DVRSVKLSRDRIVVV-L--------------EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP  192 (415)
Q Consensus       134 ~------~i~~l~~~~~~~~~~-~--------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  192 (415)
                      .      .+..++|+|++..++ .              ++.|.+||+.+++.+..+.....   ...+.+++++.+++++
T Consensus        76 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~---~~~~~~s~dg~~l~~~  152 (337)
T 1pby_B           76 TPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQ---ITMLAWARDGSKLYGL  152 (337)
T ss_dssp             BTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSS---CCCEEECTTSSCEEEE
T ss_pred             CcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCC---cceeEECCCCCEEEEe
Confidence            3      788999999996655 3              48999999999888877765332   3334455666666664


Q ss_pred             CCccCeEEEEEcCCc-ceEEEecCccceEEEEeCCCCCEEEEEeCCCc-----------------------EEEEEECCC
Q 014977          193 GLQRGQVRIEHFGLN-MIKLINAHDSHIACFTLTLDGLLLATASTRGT-----------------------LIRIFNTVD  248 (415)
Q Consensus       193 g~~dg~v~i~~~~~~-~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~-----------------------~I~vwd~~~  248 (415)
                         ++.|.+|+.... ....+..+.. ...+.|+|+|++|+..+..+.                       .|.+||+.+
T Consensus       153 ---~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~  228 (337)
T 1pby_B          153 ---GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLET  228 (337)
T ss_dssp             ---SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTT
T ss_pred             ---CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCC
Confidence               578999887654 3444443331 113378999987765554332                       168999999


Q ss_pred             CcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCC
Q 014977          249 GTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTG  328 (415)
Q Consensus       249 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (415)
                      ++.. .+....+...+.+++|+|||++|+++  ++.|++||+++++...                               
T Consensus       229 ~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~-------------------------------  274 (337)
T 1pby_B          229 GEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIK-------------------------------  274 (337)
T ss_dssp             CCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEE-------------------------------
T ss_pred             CCce-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcc-------------------------------
Confidence            8875 33322255578899999999999888  7899999998765321                               


Q ss_pred             CCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977          329 ANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~  389 (415)
                                               .+..+. ....++|+++ +.+++++.+|.|++|.+..
T Consensus       275 -------------------------~~~~~~-~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~  310 (337)
T 1pby_B          275 -------------------------RVPLPH-SYYSVNVSTDGSTVWLGGALGDLAAYDAET  310 (337)
T ss_dssp             -------------------------EEECSS-CCCEEEECTTSCEEEEESBSSEEEEEETTT
T ss_pred             -------------------------eecCCC-ceeeEEECCCCCEEEEEcCCCcEEEEECcC
Confidence                                     222221 2345789998 5688887799999998754

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.85  E-value=1.1e-19  Score=184.28  Aligned_cols=236  Identities=11%  Similarity=0.044  Sum_probs=168.3

Q ss_pred             CceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCC-
Q 014977           45 IELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ-  123 (415)
Q Consensus        45 ~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~-  123 (415)
                      ..|.+++|+|| +.++.+.++.+++||+.+.+.... .  .+...+..+.|+|++..++... +     +.|++||+.+ 
T Consensus        82 ~~v~~~~~spd-~~~~~~~~~~i~~~d~~~~~~~~l-~--~~~~~~~~~~~SpdG~~la~~~-~-----~~i~v~~~~~~  151 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLFTQGGLVGFDMLARKVTYL-F--DTNEETASLDFSPVGDRVAYVR-N-----HNLYIARGGKL  151 (706)
T ss_dssp             CCCEEEEETTT-TEEEEEETTEEEEEETTTTEEEEE-E--CCTTCCTTCEECTTSSEEEEEE-T-----TEEEEEECBCT
T ss_pred             cCceeEEECCC-CeEEEEECCEEEEEECCCCceEEc-c--CCcccccCCcCCCCCCEEEEEE-C-----CeEEEEecCcc
Confidence            57999999999 777777889999999987543222 1  3444566788999998877753 3     8999999988 


Q ss_pred             ----CCEEEEEEc-cCc--------------eeEEEEcCCeEEEE--e-C------------------------------
Q 014977          124 ----SRCIGEFAF-RSD--------------VRSVKLSRDRIVVV--L-E------------------------------  151 (415)
Q Consensus       124 ----~~~~~~~~~-~~~--------------i~~l~~~~~~~~~~--~-d------------------------------  151 (415)
                          ++....... ...              +.++.|+|||+.++  . |                              
T Consensus       152 ~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~  231 (706)
T 2z3z_A          152 GEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTP  231 (706)
T ss_dssp             TSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSC
T ss_pred             cccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCC
Confidence                776654432 222              58999999999887  2 1                              


Q ss_pred             ---CeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccC-----eEEEEEcCCc-ceEEEe--cCcc---
Q 014977          152 ---HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRG-----QVRIEHFGLN-MIKLIN--AHDS---  217 (415)
Q Consensus       152 ---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg-----~v~i~~~~~~-~~~~~~--~~~~---  217 (415)
                         ..|++||+.+++.............+..+.++|++..|+++. .++     .|++|+.... ....+.  .+..   
T Consensus       232 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~-~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~  310 (706)
T 2z3z_A          232 SHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAE-VNRAQNECKVNAYDAETGRFVRTLFVETDKHYVE  310 (706)
T ss_dssp             CCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEE-ECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCC
T ss_pred             CCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEE-eCCCCCeeEEEEEECCCCceeeEEEEccCCCeEC
Confidence               579999999887654433222223566778888888777643 343     7888887665 444443  2222   


Q ss_pred             ceEEEEeCC--CCCEEEEEeCCCcEEEEEECC-CCcEEEEEecCCCcccEEE-EEeCCCCCEEEEEeCC-C----eEEEE
Q 014977          218 HIACFTLTL--DGLLLATASTRGTLIRIFNTV-DGTRLQEVRRGVDRAEIYS-IALSPNVQWLAVASDK-G----TVHIF  288 (415)
Q Consensus       218 ~i~~l~~sp--~g~~l~s~s~dg~~I~vwd~~-~~~~~~~~~~~~~~~~v~~-l~~spdg~~l~s~s~d-g----~i~vw  288 (415)
                      .+..++|+|  +|++|++++.++. ++||++. +++.+..+..  +...+.. ++|+|||+.|+.++.+ +    .|+.|
T Consensus       311 ~~~~~~~sp~~dg~~l~~~~~~g~-~~l~~~~~~~~~~~~l~~--~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~  387 (706)
T 2z3z_A          311 PLHPLTFLPGSNNQFIWQSRRDGW-NHLYLYDTTGRLIRQVTK--GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCI  387 (706)
T ss_dssp             CCSCCEECTTCSSEEEEEECTTSS-CEEEEEETTSCEEEECCC--SSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEE
T ss_pred             ccCCceeecCCCCEEEEEEccCCc-cEEEEEECCCCEEEecCC--CCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEE
Confidence            246789999  9999999999998 9999876 6777777766  5556776 7999999988765554 3    56666


Q ss_pred             Eceecc
Q 014977          289 SLRVRV  294 (415)
Q Consensus       289 d~~~~~  294 (415)
                      |+.+++
T Consensus       388 d~~~~~  393 (706)
T 2z3z_A          388 DIKGGK  393 (706)
T ss_dssp             ETTCCC
T ss_pred             EcCCCC
Confidence            655543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.85  E-value=8.3e-20  Score=186.14  Aligned_cols=234  Identities=10%  Similarity=0.051  Sum_probs=168.9

Q ss_pred             ceEEEEEeCCCCEEEEEeCCcEEEEEccCCc--eeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCC
Q 014977           46 ELISVSWNQDYGCFAAGTSCGFRIYNCEPFK--ETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ  123 (415)
Q Consensus        46 ~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~  123 (415)
                      .|.+++|+|||++|++++++.|.+|++.+..  ...  .+..+...+..+.|+|++..++.+..      +.|++||+.+
T Consensus       110 ~v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~--~l~~~~~~~~~~~~SPDG~~la~~~~------~~i~~~d~~~  181 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLGGELYLYDLKQEGKAAVR--QLTHGEGFATDAKLSPKGGFVSFIRG------RNLWVIDLAS  181 (741)
T ss_dssp             ESCCCEECTTSSEEEEEETTEEEEEESSSCSTTSCC--BCCCSSSCEEEEEECTTSSEEEEEET------TEEEEEETTT
T ss_pred             CcceeEECCCCCEEEEEeCCcEEEEECCCCCcceEE--EcccCCcccccccCCCCCCEEEEEeC------CcEEEEecCC
Confidence            4889999999999999999999999998752  222  23355667889999999998887764      7999999988


Q ss_pred             CCEEEEEEc-cCc----------------eeEEEEcCCeEEEE---eCC-------------------------------
Q 014977          124 SRCIGEFAF-RSD----------------VRSVKLSRDRIVVV---LEH-------------------------------  152 (415)
Q Consensus       124 ~~~~~~~~~-~~~----------------i~~l~~~~~~~~~~---~d~-------------------------------  152 (415)
                      ++....... ...                +..+.|+|||+.++   .|+                               
T Consensus       182 g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~  261 (741)
T 2ecf_A          182 GRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV  261 (741)
T ss_dssp             TEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred             CCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence            876554432 221                47899999998777   343                               


Q ss_pred             --eEEEEEcCC-ceeeeEEeccCCCcceEEEecCCCceEEEEeCC----ccCeEEEEEcCCcceE-EEecCcc----ceE
Q 014977          153 --KIYVYSFVD-LKLLHQIETLANLRGLCCLSHHSSTSVLACPGL----QRGQVRIEHFGLNMIK-LINAHDS----HIA  220 (415)
Q Consensus       153 --~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~----~dg~v~i~~~~~~~~~-~~~~~~~----~i~  220 (415)
                        .|++||+.+ ++.............+..+.+ +++..|++.+.    .+..|++|+....... .+..+..    .+.
T Consensus       262 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~  340 (741)
T 2ecf_A          262 QVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHN  340 (741)
T ss_dssp             EEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCS
T ss_pred             eeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCC
Confidence              889999988 775543322122235566777 77888876432    3567888887654433 3443332    456


Q ss_pred             EEEeCCCCCEEEEEeCCCcEEEEEECC-CCcEEEEEecCCCcccEEEE-EeCCCCCEEEE-EeCCC--eEEEEEcee
Q 014977          221 CFTLTLDGLLLATASTRGTLIRIFNTV-DGTRLQEVRRGVDRAEIYSI-ALSPNVQWLAV-ASDKG--TVHIFSLRV  292 (415)
Q Consensus       221 ~l~~sp~g~~l~s~s~dg~~I~vwd~~-~~~~~~~~~~~~~~~~v~~l-~~spdg~~l~s-~s~dg--~i~vwd~~~  292 (415)
                      .++|+|||+++++++.++. ++||.+. +++ ...+..  +...+..+ .|+|||+.|+. ++.++  .++||++..
T Consensus       341 ~~~~spdg~~~~~~~~~g~-~~l~~~~~~~~-~~~l~~--~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~  413 (741)
T 2ecf_A          341 SLRFLDDGSILWSSERTGF-QHLYRIDSKGK-AAALTH--GNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL  413 (741)
T ss_dssp             CCEECTTSCEEEEECTTSS-CEEEEECSSSC-EEESCC--SSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred             ceEECCCCeEEEEecCCCc-cEEEEEcCCCC-eeeeee--cceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence            8999999999999999997 7887765 445 666665  55678787 59999998765 44454  899999875

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.84  E-value=2.8e-19  Score=188.88  Aligned_cols=237  Identities=10%  Similarity=0.071  Sum_probs=179.6

Q ss_pred             CCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEE
Q 014977           41 DVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIW  119 (415)
Q Consensus        41 ~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vw  119 (415)
                      .+|...+.++.|+++ .+++++. ++.++||.++........ +..+. .+....|++++..++.+. +     +.|.+|
T Consensus       200 ~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~-l~~~~-~~~~~~~SpDG~~la~~~-~-----~~i~~~  270 (1045)
T 1k32_A          200 VDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRK-HTSFT-DYYPRHLNTDGRRILFSK-G-----GSIYIF  270 (1045)
T ss_dssp             ECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEE-CCCCC-SSCEEEEEESSSCEEEEE-T-----TEEEEE
T ss_pred             cCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceE-ecCCC-CcceeeEcCCCCEEEEEe-C-----CEEEEe
Confidence            678999999999998 5666666 889999988643222221 21222 234558889988777664 3     899999


Q ss_pred             ECCCCCEEEEEEc------------cCceeEEEEc-CCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCC
Q 014977          120 DDHQSRCIGEFAF------------RSDVRSVKLS-RDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHS  184 (415)
Q Consensus       120 d~~~~~~~~~~~~------------~~~i~~l~~~-~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (415)
                      ++...+. ..+..            ...+.+++|+ |+++.++  .++.|++|++.+++... +..+.. ..+..+.++ 
T Consensus       271 d~~~~~l-~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~-~~~~~~-~~~~~~~~s-  346 (1045)
T 1k32_A          271 NPDTEKI-EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLK-VPEPLR-IRYVRRGGD-  346 (1045)
T ss_dssp             CTTTCCE-EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEE-CSCCSC-EEEEEECSS-
T ss_pred             cCCceEe-eeeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceEE-ccCCCc-ceEEeeeEc-
Confidence            9854443 33332            2368999999 9998777  78999999998776443 333322 245677778 


Q ss_pred             CceEEEEeCCccCeEE-EEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCccc
Q 014977          185 STSVLACPGLQRGQVR-IEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAE  263 (415)
Q Consensus       185 ~~~~l~~~g~~dg~v~-i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~  263 (415)
                      ++..+++.+ .++.+. +|+........+..|...+..++|+|||++|++++.++. |++||+.+++....+..  |...
T Consensus       347 dg~~l~~~s-~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~-v~~~d~~tg~~~~~~~~--~~~~  422 (1045)
T 1k32_A          347 TKVAFIHGT-REGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFE-IMTVDLETGKPTVIERS--REAM  422 (1045)
T ss_dssp             SEEEEEEEE-TTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEEEEC--SSSC
T ss_pred             CCCeEEEEE-CCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCe-EEEEECCCCceEEeccC--CCCC
Confidence            888888755 477787 888777766666678889999999999999999999999 99999999998777766  6778


Q ss_pred             EEEEEeCCCCCEEEEEeCCC----------eEEEEEceecc
Q 014977          264 IYSIALSPNVQWLAVASDKG----------TVHIFSLRVRV  294 (415)
Q Consensus       264 v~~l~~spdg~~l~s~s~dg----------~i~vwd~~~~~  294 (415)
                      +..++|+|||++|++++.++          .|++||+.+++
T Consensus       423 v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~  463 (1045)
T 1k32_A          423 ITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK  463 (1045)
T ss_dssp             CCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred             ccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence            89999999999999887654          89999998765

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.84  E-value=1.4e-19  Score=183.57  Aligned_cols=233  Identities=13%  Similarity=0.124  Sum_probs=162.3

Q ss_pred             eEEEEEeCCCCEEEEEe-CCcEEEEEccCCce--eEEEeccC--------------CCeeEEEEeeeCCeEEEEecCCCC
Q 014977           47 LISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE--TFRRDLKS--------------GGFRIVEMLFRCNILALVGAGDNS  109 (415)
Q Consensus        47 V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~--~~~~~~~~--------------~~~~~~~~~~~~~~~~l~s~~~d~  109 (415)
                      +..+.|.  |..++++. ++ | +||+.+++.  ........              ....+..+.|+++..++++.  + 
T Consensus        28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd~~~~~~~--~-  100 (706)
T 2z3z_A           28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGRGLVVLFT--Q-  100 (706)
T ss_dssp             CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTTTEEEEEE--T-
T ss_pred             CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCCCeEEEEE--C-
Confidence            4557788  66666666 66 8 999988665  22221100              01457889999996555553  2 


Q ss_pred             CCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE--eCCeEEEEEcCC-----ceeeeEEeccCCCc-------
Q 014977          110 QYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVD-----LKLLHQIETLANLR-------  175 (415)
Q Consensus       110 ~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~-----~~~~~~~~~~~~~~-------  175 (415)
                          +.|++||+.+++......+...+.+++|+|||+.++  .++.|++||+.+     ++.......+...+       
T Consensus       101 ----~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~  176 (706)
T 2z3z_A          101 ----GGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVH  176 (706)
T ss_dssp             ----TEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCG
T ss_pred             ----CEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchh
Confidence                899999999887766666778899999999998887  799999999988     76654433322211       


Q ss_pred             -----ceEEEecCCCceEEEEeCC--------------------------------ccCeEEEEEcCCcceEEEe---cC
Q 014977          176 -----GLCCLSHHSSTSVLACPGL--------------------------------QRGQVRIEHFGLNMIKLIN---AH  215 (415)
Q Consensus       176 -----~~~~~~~~~~~~~l~~~g~--------------------------------~dg~v~i~~~~~~~~~~~~---~~  215 (415)
                           ....+.++|+++.|+++..                                .+..|++|+........+.   .|
T Consensus       177 ~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~  256 (706)
T 2z3z_A          177 QREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPK  256 (706)
T ss_dssp             GGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCT
T ss_pred             hhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCC
Confidence                 1245667777888887531                                3456778888765544433   46


Q ss_pred             ccceEEEEeCCCCCEEEEEeCCC-----cEEEEEECCCCcEEEEEecCCCcc---cEEEEEeCC--CCCEEEEEeCCCeE
Q 014977          216 DSHIACFTLTLDGLLLATASTRG-----TLIRIFNTVDGTRLQEVRRGVDRA---EIYSIALSP--NVQWLAVASDKGTV  285 (415)
Q Consensus       216 ~~~i~~l~~sp~g~~l~s~s~dg-----~~I~vwd~~~~~~~~~~~~~~~~~---~v~~l~~sp--dg~~l~s~s~dg~i  285 (415)
                      ...+..++|+|||++|++++.++     . |++||+.+++....+....+..   .+..++|+|  ||++|++++.|+.+
T Consensus       257 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~-v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~  335 (706)
T 2z3z_A          257 EKFLTNLSWSPDENILYVAEVNRAQNECK-VNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWN  335 (706)
T ss_dssp             TCEEEEEEECTTSSEEEEEEECTTSCEEE-EEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSC
T ss_pred             ceeEeeEEEECCCCEEEEEEeCCCCCeeE-EEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCcc
Confidence            67899999999999999887765     6 9999999984444443211221   246789999  99999999999999


Q ss_pred             EEEEce
Q 014977          286 HIFSLR  291 (415)
Q Consensus       286 ~vwd~~  291 (415)
                      +||+++
T Consensus       336 ~l~~~~  341 (706)
T 2z3z_A          336 HLYLYD  341 (706)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999987

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.84  E-value=4e-19  Score=163.88  Aligned_cols=229  Identities=8%  Similarity=-0.018  Sum_probs=163.5

Q ss_pred             EEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeE-EEEecCCCCCCCCCeEEEEECCCCCE
Q 014977           49 SVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNIL-ALVGAGDNSQYPPTKVIIWDDHQSRC  126 (415)
Q Consensus        49 ~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~~~~~~i~vwd~~~~~~  126 (415)
                      .+++++++.+++++. ++.|.+||..+.+....... ........+.+++++. ++++...+     +.|.+||+.+++.
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~~~v~~~~~-----~~i~~~d~~t~~~   77 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM-PDKFGPGTAMMAPDNRTAYVLNNHY-----GDIYGIDLDTCKN   77 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC-SSCCSSCEEEECTTSSEEEEEETTT-----TEEEEEETTTTEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEec-CCCCCCceeEECCCCCEEEEEeCCC-----CcEEEEeCCCCcE
Confidence            346788888899888 99999999988665544433 2211355778899875 45555555     8999999999998


Q ss_pred             EEEEEcc-------CceeEEEEcCCeEEEE---e------------CCeEEEEEcCCceee---eEEeccCCCcceEEEe
Q 014977          127 IGEFAFR-------SDVRSVKLSRDRIVVV---L------------EHKIYVYSFVDLKLL---HQIETLANLRGLCCLS  181 (415)
Q Consensus       127 ~~~~~~~-------~~i~~l~~~~~~~~~~---~------------d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~  181 (415)
                      +..+...       ..+..++|+|+++.++   .            ++.|.+||+.+++..   ..+..+.   .+.++.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~---~~~~~~  154 (349)
T 1jmx_B           78 TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPR---QVYLMR  154 (349)
T ss_dssp             EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCS---SCCCEE
T ss_pred             EEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCC---ccccee
Confidence            8877742       2378999999998776   2            389999999885443   3333222   344455


Q ss_pred             cCCCceEEEEeCCccCeEEEEEcCC-cceEEEecCc--------------------------------------------
Q 014977          182 HHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINAHD--------------------------------------------  216 (415)
Q Consensus       182 ~~~~~~~l~~~g~~dg~v~i~~~~~-~~~~~~~~~~--------------------------------------------  216 (415)
                      +++++. +++.+   +.|.+|+... +.+..+..+.                                            
T Consensus       155 ~s~dg~-l~~~~---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  230 (349)
T 1jmx_B          155 AADDGS-LYVAG---PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATAD  230 (349)
T ss_dssp             ECTTSC-EEEES---SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCE
T ss_pred             ECCCCc-EEEcc---CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccc
Confidence            666666 43322   3387777643 3333332221                                            


Q ss_pred             ------------------------cceEEEEeCC-CCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCC
Q 014977          217 ------------------------SHIACFTLTL-DGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSP  271 (415)
Q Consensus       217 ------------------------~~i~~l~~sp-~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp  271 (415)
                                              ..+..++|+| +|++|+++  ++. |.+||+.+++.+..+..   ...+.+++|+|
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~-v~~~d~~~~~~~~~~~~---~~~~~~~~~s~  304 (349)
T 1jmx_B          231 LLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNR-LAKYDLKQRKLIKAANL---DHTYYCVAFDK  304 (349)
T ss_dssp             EEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESE-EEEEETTTTEEEEEEEC---SSCCCEEEECS
T ss_pred             cceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCe-EEEEECccCeEEEEEcC---CCCccceEECC
Confidence                                    1345678889 99999888  778 99999999998888774   23467899999


Q ss_pred             CCCEEEEEeCCCeEEEEEceecccC
Q 014977          272 NVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       272 dg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                      +|++|++++.++.|++||+++++..
T Consensus       305 dg~~l~~~~~~~~v~v~d~~~~~~~  329 (349)
T 1jmx_B          305 KGDKLYLGGTFNDLAVFNPDTLEKV  329 (349)
T ss_dssp             SSSCEEEESBSSEEEEEETTTTEEE
T ss_pred             CCCEEEEecCCCeEEEEecccccee
Confidence            9999998888999999999887754

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.84  E-value=1.2e-17  Score=154.39  Aligned_cols=281  Identities=13%  Similarity=0.056  Sum_probs=174.8

Q ss_pred             EEEEEe-----CCcEEEEEccCC-ceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCE--EEE
Q 014977           58 CFAAGT-----SCGFRIYNCEPF-KETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRC--IGE  129 (415)
Q Consensus        58 ~la~g~-----d~~v~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~--~~~  129 (415)
                      .+++|+     ++.|.+|.++.. +.........+......+.|+|++.++++...+   .++.|.+|++.+++.  +..
T Consensus         4 ~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~---~~~~v~~~~~~~g~~~~~~~   80 (347)
T 3hfq_A            4 RILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYSVDKED---DEGGIAAWQIDGQTAHKLNT   80 (347)
T ss_dssp             EEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCEEEEEEEET---TEEEEEEEEEETTEEEEEEE
T ss_pred             EEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCeEEEEEecC---CCceEEEEEecCCcEEEeee
Confidence            455553     567888888652 222221111333455668899999855444320   128999999977653  333


Q ss_pred             EE-ccCceeEEEEcCCeEEEE----eCCeEEEEEcC-Cc--eeeeEEeccCC-------CcceEEEecCCCceEEEEeCC
Q 014977          130 FA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFV-DL--KLLHQIETLAN-------LRGLCCLSHHSSTSVLACPGL  194 (415)
Q Consensus       130 ~~-~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~-~~--~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~g~  194 (415)
                      +. +...+..++|+|++++++    .++.|.+|++. ++  +.+..+.....       ...+..+.++|++. +++++.
T Consensus        81 ~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~  159 (347)
T 3hfq_A           81 VVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDL  159 (347)
T ss_dssp             EEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEET
T ss_pred             eecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeC
Confidence            22 677889999999998666    46899999995 33  33333322111       11345566677777 445566


Q ss_pred             ccCeEEEEEcC-CcceEE---EecC-ccceEEEEeCCCCCEEEEE-eCCCcEEEEEECCC--CcE--EEEEecCCC----
Q 014977          195 QRGQVRIEHFG-LNMIKL---INAH-DSHIACFTLTLDGLLLATA-STRGTLIRIFNTVD--GTR--LQEVRRGVD----  260 (415)
Q Consensus       195 ~dg~v~i~~~~-~~~~~~---~~~~-~~~i~~l~~sp~g~~l~s~-s~dg~~I~vwd~~~--~~~--~~~~~~~~~----  260 (415)
                      .++.|.+|+.. ...+..   +..+ ...+..++|+|||++|+++ ..++. |.+|++..  ++.  +..+.....    
T Consensus       160 ~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~-v~v~~~~~~~g~~~~~~~~~~~~~~~~~  238 (347)
T 3hfq_A          160 GSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQ-IASLKYDTQTGAFTQLGIVKTIPADYTA  238 (347)
T ss_dssp             TTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTE-EEEEEEETTTTEEEEEEEEESSCTTCCS
T ss_pred             CCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCE-EEEEEecCCCCceEEeeeeeecCCCCCC
Confidence            78899998876 222222   2222 3367789999999976665 55677 99999874  543  223332111    


Q ss_pred             cccEEEEEeCCCCCEEE-EEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccc
Q 014977          261 RAEIYSIALSPNVQWLA-VASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMR  339 (415)
Q Consensus       261 ~~~v~~l~~spdg~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (415)
                      ...+..++|+|||++|+ +...++.|.+|++.......                                          
T Consensus       239 ~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~------------------------------------------  276 (347)
T 3hfq_A          239 HNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLT------------------------------------------  276 (347)
T ss_dssp             CCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEE------------------------------------------
T ss_pred             CCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEE------------------------------------------
Confidence            13588999999999874 55668999999997432110                                          


Q ss_pred             cccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEeC-CcEEEEEEecCCCCcEEE
Q 014977          340 GVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMD-GSFYRCSFDPVHGGEMLQ  397 (415)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~d-g~~~~~~~~~~~~~~~~~  397 (415)
                                 ....+.........++|+++ +.|++++.+ +.+.+|.++...+ +...
T Consensus       277 -----------~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg-~l~~  324 (347)
T 3hfq_A          277 -----------LIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSG-KLSL  324 (347)
T ss_dssp             -----------EEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTC-CEEE
T ss_pred             -----------EeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCC-eEEe
Confidence                       01122222223446789999 457777765 8999999987544 4443

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.82  E-value=1.9e-18  Score=182.45  Aligned_cols=238  Identities=12%  Similarity=-0.014  Sum_probs=179.0

Q ss_pred             CCCceEEEEEe-CCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCe-eEEEEeeeCCeEEEEecCCCCCCCCCeEE-EE
Q 014977           43 DEIELISVSWN-QDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGF-RIVEMLFRCNILALVGAGDNSQYPPTKVI-IW  119 (415)
Q Consensus        43 h~~~V~~l~~s-p~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~s~~~d~~~~~~~i~-vw  119 (415)
                      |...+.+++|+ |||++|+++.++.+.+|+....... .  +..+.. .+..+.|+ ++..++.++.+     +.+. +|
T Consensus       294 ~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~-~--~~~~~~~~~~~~~~s-dg~~l~~~s~~-----~~l~~~~  364 (1045)
T 1k32_A          294 SIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVL-K--VPEPLRIRYVRRGGD-TKVAFIHGTRE-----GDFLGIY  364 (1045)
T ss_dssp             ECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEE-E--CSCCSCEEEEEECSS-SEEEEEEEETT-----EEEEEEE
T ss_pred             cccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceE-E--ccCCCcceEEeeeEc-CCCeEEEEECC-----CceEEEE
Confidence            44579999999 9999999988999999998865432 2  334554 78899999 99888877665     8898 99


Q ss_pred             ECCCCCEEEEEEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCc-
Q 014977          120 DDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ-  195 (415)
Q Consensus       120 d~~~~~~~~~~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-  195 (415)
                      ++.+++......+...+..++|+||++.++   .++.|++||+.+++....+..+...+  ..++++|++++|++++.. 
T Consensus       365 d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v--~~~~~SpDG~~la~~~~~~  442 (1045)
T 1k32_A          365 DYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMI--TDFTISDNSRFIAYGFPLK  442 (1045)
T ss_dssp             ETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCC--CCEEECTTSCEEEEEEEEC
T ss_pred             ECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCc--cceEECCCCCeEEEEecCc
Confidence            988877554334668899999999999887   57899999999988877776666544  445556677788775432 


Q ss_pred             --------cCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcE----------------
Q 014977          196 --------RGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR----------------  251 (415)
Q Consensus       196 --------dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~----------------  251 (415)
                              ++.|++|+........+..|...+..++|+|||++|++++.++. ..+|+......                
T Consensus       443 ~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  521 (1045)
T 1k32_A          443 HGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSL-DPSPDRVVLNFSFEVVSKPFVIPLIPG  521 (1045)
T ss_dssp             SSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCC-CCEECSSSSCEECCSCBEEEEEESSTT
T ss_pred             cccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecccC-CcCcchhccccccccCceeEEEEeCCC
Confidence                    25899999887777778888888999999999999999998877 77776433221                


Q ss_pred             ---------------------------EEEEecCCCcccEEEEEeCCCCCEEEE-------------EeCCCeEEEEEce
Q 014977          252 ---------------------------LQEVRRGVDRAEIYSIALSPNVQWLAV-------------ASDKGTVHIFSLR  291 (415)
Q Consensus       252 ---------------------------~~~~~~~~~~~~v~~l~~spdg~~l~s-------------~s~dg~i~vwd~~  291 (415)
                                                 +..+..  +.+.+..++++|||+++++             ......|++||+.
T Consensus       522 ~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~--~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~  599 (1045)
T 1k32_A          522 SPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINV--DPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVK  599 (1045)
T ss_dssp             CCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSC--CCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETT
T ss_pred             CCCccccCcCccccccccccccCHhHceEEcCC--CCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECC
Confidence                                       111111  4456889999999987775             1224578888887


Q ss_pred             ecc
Q 014977          292 VRV  294 (415)
Q Consensus       292 ~~~  294 (415)
                      +++
T Consensus       600 ~~~  602 (1045)
T 1k32_A          600 TRK  602 (1045)
T ss_dssp             TCC
T ss_pred             CCc
Confidence            765

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.81  E-value=1.8e-17  Score=153.00  Aligned_cols=228  Identities=10%  Similarity=0.063  Sum_probs=169.4

Q ss_pred             CceEEEEEeCCCCEEEEEe--CCcEEEEEccCCceeEEEeccCCC-------eeEEEEeeeCCeEEEE-ec-CCCCCCCC
Q 014977           45 IELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGG-------FRIVEMLFRCNILALV-GA-GDNSQYPP  113 (415)
Q Consensus        45 ~~V~~l~~sp~g~~la~g~--d~~v~iw~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~-s~-~~d~~~~~  113 (415)
                      ..+..++|+|+|++++++.  ++.|.+||.++.+...........       .....+.+++++..++ +. +.+     
T Consensus        89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~-----  163 (353)
T 3vgz_A           89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKE-----  163 (353)
T ss_dssp             SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSS-----
T ss_pred             CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCC-----
Confidence            4467899999999776655  799999999887765554442211       2367789999865433 33 344     


Q ss_pred             CeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCC--CcceEEEecCCCce
Q 014977          114 TKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLAN--LRGLCCLSHHSSTS  187 (415)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  187 (415)
                      +.|.+||+.+++.+..+. +...+.++.|+|++..++   .++.|.+||+.+++.+..+.....  ......+.+++++.
T Consensus       164 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~  243 (353)
T 3vgz_A          164 SVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQ  243 (353)
T ss_dssp             CEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTT
T ss_pred             ceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCC
Confidence            899999999999998888 666789999999987666   578999999999998887765221  22344566666676


Q ss_pred             EEEEeCCccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCCEEEEEe-CCCcEEEEEECCCCcEEEEEecCCCcccEE
Q 014977          188 VLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATAS-TRGTLIRIFNTVDGTRLQEVRRGVDRAEIY  265 (415)
Q Consensus       188 ~l~~~g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s-~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~  265 (415)
                      .+++++..++.|.+|+... +.+..+....  ...++|+|+|+++++++ .++. |.+||+.+++.+..+..   ...+.
T Consensus       244 ~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~-v~~~d~~~~~~~~~~~~---~~~~~  317 (353)
T 3vgz_A          244 RAFITDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGK-VSVIDAKSYKVVKTFDT---PTHPN  317 (353)
T ss_dssp             EEEEEESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTE-EEEEETTTTEEEEEEEC---CSEEE
T ss_pred             EEEEEeCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCe-EEEEECCCCeEEEEEec---CCCCC
Confidence            6666666678999988754 4455555433  25799999999766555 6788 99999999999888875   33689


Q ss_pred             EEEeCCCCCEEEEEeCCC
Q 014977          266 SIALSPNVQWLAVASDKG  283 (415)
Q Consensus       266 ~l~~spdg~~l~s~s~dg  283 (415)
                      +++|+|||++|+++..++
T Consensus       318 ~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          318 SLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             EEEECTTSCEEEEEEECC
T ss_pred             eEEEcCCCCEEEEEEccc
Confidence            999999999887776654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.81  E-value=1.7e-17  Score=154.18  Aligned_cols=239  Identities=13%  Similarity=0.093  Sum_probs=158.7

Q ss_pred             CCCceEEEEEeCCCCEEEEEe-C----CcEEEEEccCC--ceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCe
Q 014977           43 DEIELISVSWNQDYGCFAAGT-S----CGFRIYNCEPF--KETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK  115 (415)
Q Consensus        43 h~~~V~~l~~sp~g~~la~g~-d----~~v~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~  115 (415)
                      +...+..++|+|||++|++++ +    +.|.+|+++..  ..........+......+.+ ....++++...+     +.
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~-dg~~l~~~~~~~-----~~  121 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT-NGKNIVTANYSG-----GS  121 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE-CSSEEEEEETTT-----TE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE-CCCEEEEEECCC-----CE
Confidence            566778899999999999888 4    69999999763  22222222234445566666 333344444444     89


Q ss_pred             EEEEECCCCCEEE----EEEc-----------cCceeEEEEcCCeEEEE----eCCeEEEEEcCCcee------e-----
Q 014977          116 VIIWDDHQSRCIG----EFAF-----------RSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKL------L-----  165 (415)
Q Consensus       116 i~vwd~~~~~~~~----~~~~-----------~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~------~-----  165 (415)
                      |.+|++.....+.    .+.+           ...+.+++|+|++++++    .++.|++|++.....      +     
T Consensus       122 v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~  201 (361)
T 3scy_A          122 ITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGT  201 (361)
T ss_dssp             EEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEE
T ss_pred             EEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccc
Confidence            9999987543322    1222           22357899999998554    378999999865331      1     


Q ss_pred             -eEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcce---EEEe---cCccceEEEEeCCCCCEEEEEeCC-
Q 014977          166 -HQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMI---KLIN---AHDSHIACFTLTLDGLLLATASTR-  237 (415)
Q Consensus       166 -~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~---~~~~---~~~~~i~~l~~sp~g~~l~s~s~d-  237 (415)
                       ...... .......+.++|+++++++++..++.|.+|+.....+   ..+.   .+......++|+|||++|+++..+ 
T Consensus       202 ~~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~  280 (361)
T 3scy_A          202 PEAFKVA-PGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLK  280 (361)
T ss_dssp             EEEEECC-TTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSS
T ss_pred             ccceecC-CCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCC
Confidence             112211 1224556777888887777666789999988764333   2222   223456799999999998776655 


Q ss_pred             -CcEEEEEECC--CCc--EEEEEecCCCcccEEEEEeCCCCCEEEEEe-CCCeEEEEEcee
Q 014977          238 -GTLIRIFNTV--DGT--RLQEVRRGVDRAEIYSIALSPNVQWLAVAS-DKGTVHIFSLRV  292 (415)
Q Consensus       238 -g~~I~vwd~~--~~~--~~~~~~~~~~~~~v~~l~~spdg~~l~s~s-~dg~i~vwd~~~  292 (415)
                       +. |.+|++.  +++  .+..+..   ...+.+++|+|||++|++++ .++.|.+|+++.
T Consensus       281 ~~~-i~v~~~~~~~g~~~~~~~~~~---g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~  337 (361)
T 3scy_A          281 ADG-VAIFKVDETNGTLTKVGYQLT---GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQ  337 (361)
T ss_dssp             SCE-EEEEEECTTTCCEEEEEEEEC---SSCCCEEEECTTSCEEEEEETTTTEEEEEEECT
T ss_pred             CCE-EEEEEEcCCCCcEEEeeEecC---CCCCceEEECCCCCEEEEEECCCCCEEEEEEEC
Confidence             77 9999985  455  3334432   23578999999999998887 678999987753

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.81  E-value=9.1e-18  Score=156.41  Aligned_cols=242  Identities=11%  Similarity=0.084  Sum_probs=163.7

Q ss_pred             CCCceEEEEEeCCCCEEEEEeCCcEEEEEcc-CCceeEEEeccCCCeeEEEEeeeCCeE--EEEecC-------------
Q 014977           43 DEIELISVSWNQDYGCFAAGTSCGFRIYNCE-PFKETFRRDLKSGGFRIVEMLFRCNIL--ALVGAG-------------  106 (415)
Q Consensus        43 h~~~V~~l~~sp~g~~la~g~d~~v~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~s~~-------------  106 (415)
                      ....+..++|+|+|++|++++.+.|.+|+++ +++.........+. ....+.++|++.  +++++.             
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g-~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~  116 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGG-HPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCS-SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCC-CCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence            3346788999999999998883399999997 54432221111111 133477899988  344543             


Q ss_pred             CCCCCCCCeEEEEECC-CCCEEEEEE-----ccCceeEEEEcCCeEEEE----eCCeEEEEEcC-Cceee--eEEeccCC
Q 014977          107 DNSQYPPTKVIIWDDH-QSRCIGEFA-----FRSDVRSVKLSRDRIVVV----LEHKIYVYSFV-DLKLL--HQIETLAN  173 (415)
Q Consensus       107 ~d~~~~~~~i~vwd~~-~~~~~~~~~-----~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~-~~~~~--~~~~~~~~  173 (415)
                      .+     +.+.+|++. +++....+.     +...+.+++|+|+|++++    .++.|++|++. +++..  ..+.....
T Consensus       117 ~~-----g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~  191 (365)
T 1jof_A          117 FA-----GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDP  191 (365)
T ss_dssp             SC-----CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSST
T ss_pred             CC-----ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCC
Confidence            34     899999987 466654443     356799999999998665    25799999998 67643  22332111


Q ss_pred             CcceEEEecCCCceEEEEeCCccCeEEEEEcC---Ccce---EEEec-------Ccc------ceEEEE-eCCCCCEEEE
Q 014977          174 LRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG---LNMI---KLINA-------HDS------HIACFT-LTLDGLLLAT  233 (415)
Q Consensus       174 ~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~---~~~~---~~~~~-------~~~------~i~~l~-~sp~g~~l~s  233 (415)
                      ......+.++|+++++++++..++.|.+|+.+   ++..   ..+..       |..      .+..++ |+|||++|++
T Consensus       192 g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v  271 (365)
T 1jof_A          192 GDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFA  271 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEE
T ss_pred             CCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEE
Confidence            22466677788888877766667899997654   2221   12221       121      478999 9999998887


Q ss_pred             EeCCC------cEEEEEECC-CCcEEEE---EecCCCcccEEEEEeCC---CCCEEEEEeCC-CeEEEEEceec
Q 014977          234 ASTRG------TLIRIFNTV-DGTRLQE---VRRGVDRAEIYSIALSP---NVQWLAVASDK-GTVHIFSLRVR  293 (415)
Q Consensus       234 ~s~dg------~~I~vwd~~-~~~~~~~---~~~~~~~~~v~~l~~sp---dg~~l~s~s~d-g~i~vwd~~~~  293 (415)
                      ++.+.      . |.+|++. +++....   +..  +...+..++|+|   ||++|++++.+ +.|.+|+++..
T Consensus       272 ~~~~~~~~~~~~-i~v~~~~~~g~~~~~~~~~~~--~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          272 SSRANKFELQGY-IAGFKLRDCGSIEKQLFLSPT--PTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEESSTTSCCE-EEEEEECTTSCEEEEEEEEEC--SSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             ECCCCCCCCCCe-EEEEEECCCCCEEEeeeeeec--CCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            66432      7 9999996 6665432   222  333456789999   89999998865 89999999865

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.80  E-value=8.8e-18  Score=170.65  Aligned_cols=240  Identities=8%  Similarity=-0.030  Sum_probs=163.3

Q ss_pred             ceEEEEEeCCCCEEEEEe-C---------CcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCe
Q 014977           46 ELISVSWNQDYGCFAAGT-S---------CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK  115 (415)
Q Consensus        46 ~V~~l~~sp~g~~la~g~-d---------~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~  115 (415)
                      .|.+++|||||++|+++. +         +.+.+||+++.+.........+...+..+.|+|++..++.++.      +.
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~------~~  135 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE------NN  135 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET------TE
T ss_pred             ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC------Ce
Confidence            499999999999999987 3         6788999987654211111223334677899999988887765      79


Q ss_pred             EEEEECCCCCEEEEEE-ccCc------------------eeEEEEcCCeEEEE---eCC---------------------
Q 014977          116 VIIWDDHQSRCIGEFA-FRSD------------------VRSVKLSRDRIVVV---LEH---------------------  152 (415)
Q Consensus       116 i~vwd~~~~~~~~~~~-~~~~------------------i~~l~~~~~~~~~~---~d~---------------------  152 (415)
                      |++||+.+++...... +...                  +.++.|+|||+.++   .++                     
T Consensus       136 i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (723)
T 1xfd_A          136 IYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKP  215 (723)
T ss_dssp             EEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEE
T ss_pred             EEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCccee
Confidence            9999999888766554 2332                  37899999998877   222                     


Q ss_pred             -------------eEEEEEcCCceeeeEEeccC----CCcceEEEecCCCceEEEEeC---CccCeEEEEEcCCcce-EE
Q 014977          153 -------------KIYVYSFVDLKLLHQIETLA----NLRGLCCLSHHSSTSVLACPG---LQRGQVRIEHFGLNMI-KL  211 (415)
Q Consensus       153 -------------~i~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~g---~~dg~v~i~~~~~~~~-~~  211 (415)
                                   .|++||+.+++....+..+.    ....+..+.++|+++++++..   ..+..|++|+...... ..
T Consensus       216 ~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~  295 (723)
T 1xfd_A          216 YHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKK  295 (723)
T ss_dssp             EECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEE
T ss_pred             ccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEE
Confidence                         79999998887655555431    123456677888888876542   2345677888765443 33


Q ss_pred             Eec-CccceE----EEEeCCCCCEEEE--EeCCC------cEEEEEE-CCCCcE--EEEEecCCCcccEEE-EEeCCCCC
Q 014977          212 INA-HDSHIA----CFTLTLDGLLLAT--ASTRG------TLIRIFN-TVDGTR--LQEVRRGVDRAEIYS-IALSPNVQ  274 (415)
Q Consensus       212 ~~~-~~~~i~----~l~~sp~g~~l~s--~s~dg------~~I~vwd-~~~~~~--~~~~~~~~~~~~v~~-l~~spdg~  274 (415)
                      +.. +...+.    .++|+|||+.|+.  +..++      . |++|| ...++.  ...+..  ....+.. ++|+|||+
T Consensus       296 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~-l~~~d~~~~~~~~~~~~l~~--~~~~~~~~~~~spdg~  372 (723)
T 1xfd_A          296 HEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYH-ITVSSSQPNSSNDNIQSITS--GDWDVTKILAYDEKGN  372 (723)
T ss_dssp             EEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEE-EEEECSSCCSSSCCCCBSCC--SSSCEEEEEEEETTTT
T ss_pred             EEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeE-EEEEeccCCCCccceeEeec--CCeEEEeeeEEcCCCC
Confidence            333 344443    7899999997664  45566      4 77777 344441  444443  2234444 69999999


Q ss_pred             EEEEEeCC---CeEEEEEceecc
Q 014977          275 WLAVASDK---GTVHIFSLRVRV  294 (415)
Q Consensus       275 ~l~s~s~d---g~i~vwd~~~~~  294 (415)
                      +|+..+.+   +.++||++....
T Consensus       373 ~l~~~~~~~~~~~~~l~~~~~~~  395 (723)
T 1xfd_A          373 KIYFLSTEDLPRRRQLYSANTVG  395 (723)
T ss_dssp             EEEEEESSSCTTCCEEEEECSST
T ss_pred             EEEEEEcCCCCcceEEEEEeCCC
Confidence            99876655   789999997643

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.80  E-value=7.9e-18  Score=157.81  Aligned_cols=245  Identities=9%  Similarity=-0.065  Sum_probs=158.6

Q ss_pred             CCCCCCceEE-----EEEeCCCCEEEEEe--CCc--EEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCC
Q 014977           40 SDVDEIELIS-----VSWNQDYGCFAAGT--SCG--FRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQ  110 (415)
Q Consensus        40 ~~~h~~~V~~-----l~~sp~g~~la~g~--d~~--v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~  110 (415)
                      ...|......     .+|+|||++|+.++  ++.  |.+|++++.+...  ....+...+....|+|++..|+....+  
T Consensus        26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~--lt~~~~~~~~~~~~spdg~~l~~~~~~--  101 (388)
T 3pe7_A           26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ--LTEGRGDNTFGGFLSPDDDALFYVKDG--  101 (388)
T ss_dssp             CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE--CCCSSCBCSSSCEECTTSSEEEEEETT--
T ss_pred             ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE--eeeCCCCCccceEEcCCCCEEEEEeCC--
Confidence            3445544554     78999999999887  453  7777877654322  222333333356799999888877766  


Q ss_pred             CCCCeEEEEECCCCCEEEEEEc-cCceeEE--EEcCCeEEEE-------------------------eCCeEEEEEcCCc
Q 014977          111 YPPTKVIIWDDHQSRCIGEFAF-RSDVRSV--KLSRDRIVVV-------------------------LEHKIYVYSFVDL  162 (415)
Q Consensus       111 ~~~~~i~vwd~~~~~~~~~~~~-~~~i~~l--~~~~~~~~~~-------------------------~d~~i~iwd~~~~  162 (415)
                         +.|++||+.+++....+.. ...+...  .+++++..++                         .+..|++||+.++
T Consensus       102 ---~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g  178 (388)
T 3pe7_A          102 ---RNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG  178 (388)
T ss_dssp             ---TEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC
T ss_pred             ---CeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC
Confidence               8999999999988776663 3334333  3488888776                         1267999999988


Q ss_pred             eeeeEEeccCCCcceEEEecCC-CceEEEEeCCc-----cCeEEEEEcCCcceEEEecCc--cceEEEEeCCCCCEEEEE
Q 014977          163 KLLHQIETLANLRGLCCLSHHS-STSVLACPGLQ-----RGQVRIEHFGLNMIKLINAHD--SHIACFTLTLDGLLLATA  234 (415)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~g~~-----dg~v~i~~~~~~~~~~~~~~~--~~i~~l~~sp~g~~l~s~  234 (415)
                      +...... +..  .+..+.++| ++..|++....     ...|.+++..+.....+..+.  ..+..++|+|||+.|+..
T Consensus       179 ~~~~l~~-~~~--~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~  255 (388)
T 3pe7_A          179 ESTVILQ-ENQ--WLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYV  255 (388)
T ss_dssp             CEEEEEE-ESS--CEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEE
T ss_pred             ceEEeec-CCc--cccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEE
Confidence            6554433 333  345666777 77777765432     236677777666666665554  357789999999977654


Q ss_pred             eC-C----CcEEEEEECCCCcEEEEEecCCCccc---EEEEEeCCCCCEEEEE---------eCCCeEEEEEceeccc
Q 014977          235 ST-R----GTLIRIFNTVDGTRLQEVRRGVDRAE---IYSIALSPNVQWLAVA---------SDKGTVHIFSLRVRVV  295 (415)
Q Consensus       235 s~-d----g~~I~vwd~~~~~~~~~~~~~~~~~~---v~~l~~spdg~~l~s~---------s~dg~i~vwd~~~~~~  295 (415)
                      +. +    .. |++||+.+++.........+...   ...+.|+|||+.|+..         ..+..|++||+.+++.
T Consensus       256 ~~~~~~~~~~-l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~  332 (388)
T 3pe7_A          256 SYLKGSPDRF-IYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ  332 (388)
T ss_dssp             EEETTCCCEE-EEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE
T ss_pred             ecCCCCCcce-EEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce
Confidence            43 2    24 99999999875332221101100   1123699999988854         4466899999988653

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.80  E-value=3.2e-16  Score=140.60  Aligned_cols=243  Identities=14%  Similarity=0.179  Sum_probs=178.0

Q ss_pred             CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEec----cCCCeeEEEEee-eCCeEEEEecCC-CCCCC
Q 014977           40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDL----KSGGFRIVEMLF-RCNILALVGAGD-NSQYP  112 (415)
Q Consensus        40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~l~s~~~-d~~~~  112 (415)
                      ..++-..+.++++++++.++++.. ++.|.+|+.+. +.......    ..+......+++ .+++.++++... +    
T Consensus        25 ~~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~----   99 (286)
T 1q7f_A           25 MEGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPT----   99 (286)
T ss_dssp             STTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS-CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGG----
T ss_pred             CCCccCCCceEEECCCCCEEEEECCCCEEEEECCCC-cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCC----
Confidence            356677899999999999888877 89999999873 33222211    012245677888 467777777642 4    


Q ss_pred             CCeEEEEECCCCCEEEEEE--ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCce
Q 014977          113 PTKVIIWDDHQSRCIGEFA--FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS  187 (415)
Q Consensus       113 ~~~i~vwd~~~~~~~~~~~--~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (415)
                       +.|.+|| .+++.+..+.  ....+.++++++++.+++   .++.|++||. +++.+..+...........+..++++.
T Consensus       100 -~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~  176 (286)
T 1q7f_A          100 -HQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQE  176 (286)
T ss_dssp             -CEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSE
T ss_pred             -CEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCC
Confidence             8999999 6788777775  345789999999998776   3688999995 456666654322222456777777777


Q ss_pred             EEEEeCCccCeEEEEEcCCcceEEEecC--ccceEEEEeCCCCCEEEEEeCCC-cEEEEEECCCCcEEEEEecCCCcccE
Q 014977          188 VLACPGLQRGQVRIEHFGLNMIKLINAH--DSHIACFTLTLDGLLLATASTRG-TLIRIFNTVDGTRLQEVRRGVDRAEI  264 (415)
Q Consensus       188 ~l~~~g~~dg~v~i~~~~~~~~~~~~~~--~~~i~~l~~sp~g~~l~s~s~dg-~~I~vwd~~~~~~~~~~~~~~~~~~v  264 (415)
                      ++++ ...++.|++|+..++.+..+..+  ...+..++++++|+++++...++ . |.+||. +++.+..+..+.....+
T Consensus       177 l~v~-~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~-i~~~~~-~g~~~~~~~~~~~~~~~  253 (286)
T 1q7f_A          177 IFIS-DNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFN-LTIFTQ-DGQLISALESKVKHAQC  253 (286)
T ss_dssp             EEEE-EGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCE-EEEECT-TSCEEEEEEESSCCSCE
T ss_pred             EEEE-ECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEE-EEEECC-CCCEEEEEcccCCCCcc
Confidence            6554 55688999999888777766543  35788999999999888887775 8 999995 67777777653333357


Q ss_pred             EEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977          265 YSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (415)
Q Consensus       265 ~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  294 (415)
                      .+++++|+|+++++ +.|++|++|++....
T Consensus       254 ~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~  282 (286)
T 1q7f_A          254 FDVALMDDGSVVLA-SKDYRLYIYRYVQLA  282 (286)
T ss_dssp             EEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred             eeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence            89999999987766 679999999986543

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.78  E-value=2.7e-19  Score=181.74  Aligned_cols=241  Identities=11%  Similarity=0.005  Sum_probs=159.4

Q ss_pred             EEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCe---eEEEEeeeCCeEEEEecCCCC-CC---CCCeEEEEEC
Q 014977           49 SVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGF---RIVEMLFRCNILALVGAGDNS-QY---PPTKVIIWDD  121 (415)
Q Consensus        49 ~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~s~~~d~-~~---~~~~i~vwd~  121 (415)
                      .++|+|||++++++.++.|++|++.+++......  .+..   .+..+.|+||+..++.++... .|   .++.|++||+
T Consensus        20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~   97 (719)
T 1z68_A           20 FPNWISGQEYLHQSADNNIVLYNIETGQSYTILS--NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL   97 (719)
T ss_dssp             CCEESSSSEEEEECTTSCEEEEESSSCCEEEEEC--HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             ccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEc--cccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence            6799999976666559999999998866543321  2222   267889999998887765410 00   0289999999


Q ss_pred             CCCCEEEEEEccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEe-ccCCCc---------------ceEEEecC
Q 014977          122 HQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIE-TLANLR---------------GLCCLSHH  183 (415)
Q Consensus       122 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~-~~~~~~---------------~~~~~~~~  183 (415)
                      .+++.+........+..++|+|||+.++  .++.|++||+.+++...... ++...+               ....+.++
T Consensus        98 ~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wS  177 (719)
T 1z68_A           98 SNGEFVRGNELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWS  177 (719)
T ss_dssp             TTTEECCSSCCCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEEC
T ss_pred             CCCccccceecCcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEEC
Confidence            9887632122346788999999998887  79999999998877654321 111100               11356777


Q ss_pred             CCceEEEEeCCccC---------------------------------eEEEEEcCCcceE---E------EecCccceEE
Q 014977          184 SSTSVLACPGLQRG---------------------------------QVRIEHFGLNMIK---L------INAHDSHIAC  221 (415)
Q Consensus       184 ~~~~~l~~~g~~dg---------------------------------~v~i~~~~~~~~~---~------~~~~~~~i~~  221 (415)
                      |+++.|++....++                                 .|++|+.......   .      +..|...+..
T Consensus       178 PDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (719)
T 1z68_A          178 PNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSW  257 (719)
T ss_dssp             TTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEE
T ss_pred             CCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEE
Confidence            78888887542211                                 6667877665431   1      2357788999


Q ss_pred             EEeCCCCCEEEEEeCC----CcEEEEEE----CCCCcEEEEE----ecCCCcccEE-----EEEeCCCCCEEEE--EeCC
Q 014977          222 FTLTLDGLLLATASTR----GTLIRIFN----TVDGTRLQEV----RRGVDRAEIY-----SIALSPNVQWLAV--ASDK  282 (415)
Q Consensus       222 l~~sp~g~~l~s~s~d----g~~I~vwd----~~~~~~~~~~----~~~~~~~~v~-----~l~~spdg~~l~s--~s~d  282 (415)
                      ++|+||++++++....    .. |.+||    +.+++....+    ..  +...+.     .+.|+|||+.|+.  ...+
T Consensus       258 ~~~SpD~~~~~~~~~~~~~~~~-l~~~d~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~spdg~~l~~~~~~~~  334 (719)
T 1z68_A          258 LTWVTDERVCLQWLKRVQNVSV-LSICDFREDWQTWDCPKTQEHIEES--RTGWAGGFFVSTPVFSYDAISYYKIFSDKD  334 (719)
T ss_dssp             EEESSSSEEEEEEEESSTTEEE-EEEEEECSSSSSEECCGGGEEEEEC--SSSCSSSSSCCCCEECTTSSCEEEEEECTT
T ss_pred             eEEeCCCeEEEEEeccccCeEE-EEEEcccCCCCCCceEEEEeccccc--CCceEccccCCccEECCCCCeEEEEEEccC
Confidence            9999998877764322    24 88899    7777654333    23  444555     7899999996654  4455


Q ss_pred             C--eEEEEEceecc
Q 014977          283 G--TVHIFSLRVRV  294 (415)
Q Consensus       283 g--~i~vwd~~~~~  294 (415)
                      |  .|++|++.+++
T Consensus       335 g~~~l~~~~~~~~~  348 (719)
T 1z68_A          335 GYKHIHYIKDTVEN  348 (719)
T ss_dssp             SCEEEEEESSCSTT
T ss_pred             CceEEEEEECCCCc
Confidence            5  46666665543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.78  E-value=2.5e-16  Score=146.21  Aligned_cols=232  Identities=16%  Similarity=0.119  Sum_probs=146.5

Q ss_pred             CCCEEEEEe-----CCcEEEEEccC--CceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCC--CC
Q 014977           55 DYGCFAAGT-----SCGFRIYNCEP--FKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ--SR  125 (415)
Q Consensus        55 ~g~~la~g~-----d~~v~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~--~~  125 (415)
                      ...++++|+     ++.|.+|.++.  ++......+  +......+.|+|++..+++++.+. ..++.|.+|++..  ++
T Consensus        12 ~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~-~~~~~v~~~~~~~~~g~   88 (361)
T 3scy_A           12 SELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFS-KDQAAVSAFAFDKEKGT   88 (361)
T ss_dssp             GEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCS-STTCEEEEEEEETTTTE
T ss_pred             CceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccC-CCCCcEEEEEEeCCCCc
Confidence            344566664     56899998864  332222222  344455678999987666655420 0127999998765  43


Q ss_pred             E--EEEEE-ccCceeEEEEcCCeEEEE----eCCeEEEEEcCCceeeeEE---eccCC---------CcceEEEecCCCc
Q 014977          126 C--IGEFA-FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQI---ETLAN---------LRGLCCLSHHSST  186 (415)
Q Consensus       126 ~--~~~~~-~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~---~~~~~---------~~~~~~~~~~~~~  186 (415)
                      .  +.... +......+++  ++..++    .++.|.+|++.....+..+   ..+..         ......+.++|++
T Consensus        89 ~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg  166 (361)
T 3scy_A           89 LHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDG  166 (361)
T ss_dssp             EEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTS
T ss_pred             EEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCC
Confidence            3  22233 4556777888  554444    4789999999654332211   11110         1123556777788


Q ss_pred             eEEEEeCCccCeEEEEEcCCcc-------e-------EEEecCccceEEEEeCCCCCEEEEEe-CCCcEEEEEECCCCcE
Q 014977          187 SVLACPGLQRGQVRIEHFGLNM-------I-------KLINAHDSHIACFTLTLDGLLLATAS-TRGTLIRIFNTVDGTR  251 (415)
Q Consensus       187 ~~l~~~g~~dg~v~i~~~~~~~-------~-------~~~~~~~~~i~~l~~sp~g~~l~s~s-~dg~~I~vwd~~~~~~  251 (415)
                      +++++++..++.|.+|+.....       +       .....+...+..++|+|+|++|++++ .++. |.+||+.+++.
T Consensus       167 ~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~-v~v~~~~~g~~  245 (361)
T 3scy_A          167 KYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGT-VIAFRYADGML  245 (361)
T ss_dssp             SEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCE-EEEEEEETTEE
T ss_pred             CEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCe-EEEEEecCCce
Confidence            8777667678899998765322       1       11223455678999999999888777 5778 99999987754


Q ss_pred             --EEEEecC-CCcccEEEEEeCCCCCEEEEEeCC--CeEEEEEcee
Q 014977          252 --LQEVRRG-VDRAEIYSIALSPNVQWLAVASDK--GTVHIFSLRV  292 (415)
Q Consensus       252 --~~~~~~~-~~~~~v~~l~~spdg~~l~s~s~d--g~i~vwd~~~  292 (415)
                        +..+... .+...+..++|+|||++|+++..+  +.|.+|++..
T Consensus       246 ~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~  291 (361)
T 3scy_A          246 DEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDE  291 (361)
T ss_dssp             EEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECT
T ss_pred             EEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcC
Confidence              3333321 122356899999999998776654  8999999963

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.78  E-value=2.8e-17  Score=151.43  Aligned_cols=228  Identities=9%  Similarity=0.022  Sum_probs=162.3

Q ss_pred             EeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccC--ceeEEEEcCCeEEEE----eCCeEEEEEcCCceeee
Q 014977           93 MLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRS--DVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLH  166 (415)
Q Consensus        93 ~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~--~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~  166 (415)
                      +.+.+++.++++++.+     +.|.+||+.+++.+..+....  .+..++|+|+++.++    .++.|++||+.+++.+.
T Consensus         5 ~~~~~~~~~~v~~~~~-----~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~   79 (349)
T 1jmx_B            5 PALKAGHEYMIVTNYP-----NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTF   79 (349)
T ss_dssp             CCCCTTCEEEEEEETT-----TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             ccccCCCEEEEEeCCC-----CeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEE
Confidence            4567788888888777     999999999999988888555  788999999987543    47899999999998887


Q ss_pred             EEeccCC----CcceEEEecCCCceEEEEeCCc-----------cCeEEEEEcCCc----ceEEEecCccceEEEEeCCC
Q 014977          167 QIETLAN----LRGLCCLSHHSSTSVLACPGLQ-----------RGQVRIEHFGLN----MIKLINAHDSHIACFTLTLD  227 (415)
Q Consensus       167 ~~~~~~~----~~~~~~~~~~~~~~~l~~~g~~-----------dg~v~i~~~~~~----~~~~~~~~~~~i~~l~~sp~  227 (415)
                      .+.....    ...+..+.++++++++++++..           ++.|.+|+....    .+..+. +...+.+++|+|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~d  158 (349)
T 1jmx_B           80 HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADD  158 (349)
T ss_dssp             EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTT
T ss_pred             EEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCC
Confidence            7764321    1123445566677777764422           388999887642    223333 3446889999999


Q ss_pred             CCEEEEEeCCCcEEEEEECCCCcEEEEEecCCC-----------------------------------------------
Q 014977          228 GLLLATASTRGTLIRIFNTVDGTRLQEVRRGVD-----------------------------------------------  260 (415)
Q Consensus       228 g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~-----------------------------------------------  260 (415)
                      |+ +++++  +. |++||+.+++.+..+..+..                                               
T Consensus       159 g~-l~~~~--~~-i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  234 (349)
T 1jmx_B          159 GS-LYVAG--PD-IYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG  234 (349)
T ss_dssp             SC-EEEES--SS-EEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred             Cc-EEEcc--Cc-EEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence            99 55554  45 99999999988777654210                                               


Q ss_pred             -------------------cccEEEEEeCC-CCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCc
Q 014977          261 -------------------RAEIYSIALSP-NVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFD  320 (415)
Q Consensus       261 -------------------~~~v~~l~~sp-dg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (415)
                                         ...+..++|+| |+++|+++  ++.|.+||+++++...                       
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~-----------------------  289 (349)
T 1jmx_B          235 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIK-----------------------  289 (349)
T ss_dssp             EEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEE-----------------------
T ss_pred             EEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEE-----------------------
Confidence                               01345677889 99999888  8899999998776321                       


Q ss_pred             ccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977          321 TLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~  389 (415)
                                                       .+..+. ....++|+++ +.|++++.+|.|++|....
T Consensus       290 ---------------------------------~~~~~~-~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~  325 (349)
T 1jmx_B          290 ---------------------------------AANLDH-TYYCVAFDKKGDKLYLGGTFNDLAVFNPDT  325 (349)
T ss_dssp             ---------------------------------EEECSS-CCCEEEECSSSSCEEEESBSSEEEEEETTT
T ss_pred             ---------------------------------EEcCCC-CccceEECCCCCEEEEecCCCeEEEEeccc
Confidence                                             122221 2335789998 6788877789999998753

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.77  E-value=2.8e-16  Score=149.54  Aligned_cols=238  Identities=15%  Similarity=0.121  Sum_probs=160.9

Q ss_pred             CCceEEEEEeCCCCEEEEEeCCcEEEEEccCCc----------eeEE----EeccCCCeeEEEEeeeCCeEEEE----ec
Q 014977           44 EIELISVSWNQDYGCFAAGTSCGFRIYNCEPFK----------ETFR----RDLKSGGFRIVEMLFRCNILALV----GA  105 (415)
Q Consensus        44 ~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~----------~~~~----~~~~~~~~~~~~~~~~~~~~~l~----s~  105 (415)
                      ...++.+++++++.++++++...++||+.....          ....    ..+ .+...+.++.|++++..++    ++
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~lav~~~sg  114 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKFPIHHLALSCDNLTLSACMMSS  114 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSSCEEEEEECTTSCEEEEEEEET
T ss_pred             CCCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccc-cCCCcccEEEEcCCCCEEEEEEecc
Confidence            446899999999999999993349998764211          0000    011 2344689999999998888    78


Q ss_pred             CCCCCCCCCeEEEEECCCC--------CEE---EEEE-ccCceeEEEEcCC-eEEEE---eCCeEEEEEcCCceeeeEEe
Q 014977          106 GDNSQYPPTKVIIWDDHQS--------RCI---GEFA-FRSDVRSVKLSRD-RIVVV---LEHKIYVYSFVDLKLLHQIE  169 (415)
Q Consensus       106 ~~d~~~~~~~i~vwd~~~~--------~~~---~~~~-~~~~i~~l~~~~~-~~~~~---~d~~i~iwd~~~~~~~~~~~  169 (415)
                      +.|     +.|++||+.++        +.+   ..+. |...|.+++|+|+ +.+++   .|++|++||++++..+....
T Consensus       115 s~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~  189 (434)
T 2oit_A          115 EYG-----SIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATL  189 (434)
T ss_dssp             TTE-----EEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEE
T ss_pred             CCC-----ceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeecc
Confidence            877     99999997654        222   2233 7899999999997 56555   69999999999887665555


Q ss_pred             ccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEecCc-------cceEEEEeCCCCCEEEEEe-CCCc--
Q 014977          170 TLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHD-------SHIACFTLTLDGLLLATAS-TRGT--  239 (415)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~-------~~i~~l~~sp~g~~l~s~s-~dg~--  239 (415)
                      .|..  .+.++++++++.+|++ |+.||.|++|+.++.....+..|.       ..+.+++|++++.++++.+ .+|.  
T Consensus       190 ~~~~--~v~~v~wspdg~~las-gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~  266 (434)
T 2oit_A          190 PSTV--AVTSVCWSPKGKQLAV-GKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLE  266 (434)
T ss_dssp             CGGG--CEEEEEECTTSSCEEE-EETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSS
T ss_pred             CCCC--ceeEEEEcCCCCEEEE-EcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccC
Confidence            5555  5666677777888876 668999999998866555555442       3789999999988775533 3321  


Q ss_pred             ---EEEEEECCCCc-----EEEEEecC-----CCcccEEEEEeCCCCCEEEEEeC-CCeEEEEEc
Q 014977          240 ---LIRIFNTVDGT-----RLQEVRRG-----VDRAEIYSIALSPNVQWLAVASD-KGTVHIFSL  290 (415)
Q Consensus       240 ---~I~vwd~~~~~-----~~~~~~~~-----~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd~  290 (415)
                         .+++|++...+     ....+...     ....+-..+.+-++.+++++++. .+.|.|+..
T Consensus       267 ~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~  331 (434)
T 2oit_A          267 TSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILAR  331 (434)
T ss_dssp             SCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred             CCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEe
Confidence               28899997642     12222211     12222233444466676665544 455777764

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.76  E-value=4.9e-17  Score=154.79  Aligned_cols=169  Identities=14%  Similarity=0.124  Sum_probs=124.5

Q ss_pred             CeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE--eCCeEEEEEcCCce----------eeeEEe---ccCCCcceE
Q 014977          114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLK----------LLHQIE---TLANLRGLC  178 (415)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~----------~~~~~~---~~~~~~~~~  178 (415)
                      +.+++|+... .     .....++.+++++++.+++  ....+++|+.....          .+....   .......+.
T Consensus        23 ~~vri~~~~~-~-----~~~~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   96 (434)
T 2oit_A           23 KKVRIFDSPE-E-----LPKERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIH   96 (434)
T ss_dssp             CEEECSCCCS-S-----CCCSCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEE
T ss_pred             eeEEecCCcc-c-----cCCCCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCccc
Confidence            5677776321 1     1234578889998776666  44458998763210          000000   001122467


Q ss_pred             EEecCCCceEEEE---eCCccCeEEEEEcCCc---------c---eEEEecCccceEEEEeCCC-CCEEEEEeCCCcEEE
Q 014977          179 CLSHHSSTSVLAC---PGLQRGQVRIEHFGLN---------M---IKLINAHDSHIACFTLTLD-GLLLATASTRGTLIR  242 (415)
Q Consensus       179 ~~~~~~~~~~l~~---~g~~dg~v~i~~~~~~---------~---~~~~~~~~~~i~~l~~sp~-g~~l~s~s~dg~~I~  242 (415)
                      ++++++++.+|++   +|+.|+.|++|+....         .   +..+.+|...|.+++|+|+ +.+|++++.||. |+
T Consensus        97 ~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~-v~  175 (434)
T 2oit_A           97 HLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS-IA  175 (434)
T ss_dssp             EEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC-EE
T ss_pred             EEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe-EE
Confidence            7788888888885   6889999999986532         1   3445679999999999998 889999999999 99


Q ss_pred             EEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEce
Q 014977          243 IFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR  291 (415)
Q Consensus       243 vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~  291 (415)
                      +||++++..+.....  |...|.+++|+|+|++|++|+.||+|++||++
T Consensus       176 iwD~~~~~~~~~~~~--~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~  222 (434)
T 2oit_A          176 VLQVTETVKVCATLP--STVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT  222 (434)
T ss_dssp             EEEESSSEEEEEEEC--GGGCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred             EEEcCCCcceeeccC--CCCceeEEEEcCCCCEEEEEcCCCcEEEEccC
Confidence            999999877666655  77899999999999999999999999999998

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.75  E-value=2.4e-17  Score=167.88  Aligned_cols=244  Identities=12%  Similarity=0.085  Sum_probs=163.2

Q ss_pred             CceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCe-----eEEEEeeeCCeEEEEecCCCCC-C---CCCe
Q 014977           45 IELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGF-----RIVEMLFRCNILALVGAGDNSQ-Y---PPTK  115 (415)
Q Consensus        45 ~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~s~~~d~~-~---~~~~  115 (415)
                      ....+++|+|||++++++ ++.|++|++.+++......  .+..     ....+.|+||+..++.+..+.. +   ..+.
T Consensus        17 ~~~~~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~   93 (740)
T 4a5s_A           17 LKLYSLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLE--NSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS   93 (740)
T ss_dssp             CCCCCEEECSSSEEEEEE-TTEEEEEETTTCCEEEEEC--TTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred             ccccccEECCCCcEEEEc-CCcEEEEECCCCceEEEEe--chhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence            346689999999999987 9999999999876543322  3221     2234678999987777654300 0   1146


Q ss_pred             EEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEE-eccCCCc---------------ce
Q 014977          116 VIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQI-ETLANLR---------------GL  177 (415)
Q Consensus       116 i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~-~~~~~~~---------------~~  177 (415)
                      +.+||+.+++......+...+...+|+|||+.++  .++.|++|++.+++..+.. .++...+               ..
T Consensus        94 ~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~  173 (740)
T 4a5s_A           94 YDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAY  173 (740)
T ss_dssp             EEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred             EEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCC
Confidence            7799999987654334677899999999999888  7999999999887654321 1211100               11


Q ss_pred             EEEecCCCceEEEEeCCcc---------------------------------C--eEEEEEcCC---c---ceEEEec--
Q 014977          178 CCLSHHSSTSVLACPGLQR---------------------------------G--QVRIEHFGL---N---MIKLINA--  214 (415)
Q Consensus       178 ~~~~~~~~~~~l~~~g~~d---------------------------------g--~v~i~~~~~---~---~~~~~~~--  214 (415)
                      ..+.|+|+++.||+....+                                 .  .|++|+...   .   ....+..  
T Consensus       174 ~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~  253 (740)
T 4a5s_A          174 SALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPA  253 (740)
T ss_dssp             BCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCH
T ss_pred             cceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCc
Confidence            2356777888888743111                                 1  456677766   4   4445543  


Q ss_pred             ----CccceEEEEeCCCCCEEEEEeC----CCcEEEEEECCCCc----EE--EEE--ecCCCcccEE-----EEEeCCCC
Q 014977          215 ----HDSHIACFTLTLDGLLLATAST----RGTLIRIFNTVDGT----RL--QEV--RRGVDRAEIY-----SIALSPNV  273 (415)
Q Consensus       215 ----~~~~i~~l~~sp~g~~l~s~s~----dg~~I~vwd~~~~~----~~--~~~--~~~~~~~~v~-----~l~~spdg  273 (415)
                          |...+..++|+|||++++....    +.. |++||+.+++    +.  ..+  ..  +...|.     .+.|+|||
T Consensus       254 ~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~-i~~~d~~tg~~~~~~~~~~~l~~~~--~~~~v~~~~~~~p~fspDG  330 (740)
T 4a5s_A          254 SMLIGDHYLCDVTWATQERISLQWLRRIQNYSV-MDICDYDESSGRWNCLVARQHIEMS--TTGWVGRFRPSEPHFTLDG  330 (740)
T ss_dssp             HHHTSCEEEEEEEEEETTEEEEEEEESSTTEEE-EEEEEEETTTTEEEECGGGCEEEEC--SSSCSSSSSCCCCEECTTS
T ss_pred             cCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEE-EEEEECCCCccccceeEEEEeeecc--CCceEccCcCCCceEcCCC
Confidence                7778999999999997665433    235 9999999887    21  122  22  333333     68899999


Q ss_pred             CEEE-EEeC-CC--eEEEEEceecc
Q 014977          274 QWLA-VASD-KG--TVHIFSLRVRV  294 (415)
Q Consensus       274 ~~l~-s~s~-dg--~i~vwd~~~~~  294 (415)
                      +.|+ ..+. +|  .|++|++..++
T Consensus       331 ~~l~~~~s~~~G~~~l~~~~~~~~~  355 (740)
T 4a5s_A          331 NSFYKIISNEEGYRHICYFQIDKKD  355 (740)
T ss_dssp             SEEEEEEECTTSCEEEEEEETTCSS
T ss_pred             CEEEEEEEcCCCceEEEEEECCCCc
Confidence            9887 6654 33  68888887655

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.73  E-value=2.4e-15  Score=140.01  Aligned_cols=227  Identities=11%  Similarity=0.072  Sum_probs=147.5

Q ss_pred             EEEEEe---CCcEEEEEccC--CceeEEEecc-CCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECC-CCCEEEEE
Q 014977           58 CFAAGT---SCGFRIYNCEP--FKETFRRDLK-SGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH-QSRCIGEF  130 (415)
Q Consensus        58 ~la~g~---d~~v~iw~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~-~~~~~~~~  130 (415)
                      +|++|+   ++.|.+|+++.  +......... .+...+..+.+++++..+++++.      +.|.+|++. +++.....
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~------~~v~~~~~~~~g~~~~~~   77 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM------KKWSSFAVKSPTEIVHEA   77 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB------TEEEEEEEEETTEEEEEE
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEcc------ceEEEEEECCCCCEEEee
Confidence            455666   25788887753  2222111111 22335667889999987776655      489999987 77765544


Q ss_pred             Ecc--CceeEEEEcCCeEE--EE----------------eCCeEEEEEcC-CceeeeEEec--cCCCcceEEEecCCCce
Q 014977          131 AFR--SDVRSVKLSRDRIV--VV----------------LEHKIYVYSFV-DLKLLHQIET--LANLRGLCCLSHHSSTS  187 (415)
Q Consensus       131 ~~~--~~i~~l~~~~~~~~--~~----------------~d~~i~iwd~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~  187 (415)
                      .+.  +.+..++|+|+++.  ++                .++.+.+|++. +++....+..  +........+.++|+++
T Consensus        78 ~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~  157 (365)
T 1jof_A           78 SHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTET  157 (365)
T ss_dssp             EEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSS
T ss_pred             EeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCC
Confidence            432  44667899999984  32                26789999996 4665444432  11222456677777887


Q ss_pred             EEEEeCCccCeEEEEEcC-Ccce---EEEe--cCccceEEEEeCCCCCEEEEEeC-CCcEEEEEECC--CCcEE---EEE
Q 014977          188 VLACPGLQRGQVRIEHFG-LNMI---KLIN--AHDSHIACFTLTLDGLLLATAST-RGTLIRIFNTV--DGTRL---QEV  255 (415)
Q Consensus       188 ~l~~~g~~dg~v~i~~~~-~~~~---~~~~--~~~~~i~~l~~sp~g~~l~s~s~-dg~~I~vwd~~--~~~~~---~~~  255 (415)
                      +++++...++.|++|+.. ....   ..+.  .|...+..++|+|+|++|++++. ++. |.+|++.  +++..   ..+
T Consensus       158 ~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~-v~v~~~~~~~g~~~~~~~~~  236 (365)
T 1jof_A          158 YLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNR-ICEYVIDPATHMPVYTHHSF  236 (365)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTE-EEEEEECTTTCCEEEEEEEE
T ss_pred             EEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCe-EEEEEEeCCCCcEEEccceE
Confidence            777655456789998875 3222   2233  23567899999999999888775 567 9999865  56643   223


Q ss_pred             ecCC-----Ccc------cEEEEE-eCCCCCEEEEEeCC-C-----eEEEEEce
Q 014977          256 RRGV-----DRA------EIYSIA-LSPNVQWLAVASDK-G-----TVHIFSLR  291 (415)
Q Consensus       256 ~~~~-----~~~------~v~~l~-~spdg~~l~s~s~d-g-----~i~vwd~~  291 (415)
                      ....     +..      .+..++ |+|||++|+++..+ +     +|.+|+++
T Consensus       237 ~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~  290 (365)
T 1jof_A          237 PLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLR  290 (365)
T ss_dssp             ESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEEC
T ss_pred             EcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEEC
Confidence            2210     111      488999 99999998876543 2     89999997

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.72  E-value=3e-16  Score=147.16  Aligned_cols=234  Identities=9%  Similarity=-0.077  Sum_probs=151.3

Q ss_pred             CCceEEEEEeCCCCEEEEEe--CC--cEEEEEccCCceeEEEeccCCCeeEE-EEeeeCCeEEEEecCCCCCCCCCeEEE
Q 014977           44 EIELISVSWNQDYGCFAAGT--SC--GFRIYNCEPFKETFRRDLKSGGFRIV-EMLFRCNILALVGAGDNSQYPPTKVII  118 (415)
Q Consensus        44 ~~~V~~l~~sp~g~~la~g~--d~--~v~iw~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~s~~~d~~~~~~~i~v  118 (415)
                      ...+..++|+|||++|+...  ++  .|.+|++++.+. ..  +..+..... .+.|+|++..|+....+     +.|.+
T Consensus        35 ~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~-~~--l~~~~~~~~~~~~~spdg~~l~~~~~~-----~~l~~  106 (396)
T 3c5m_A           35 RNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQA-VQ--LTEGKGDNTFGGFISTDERAFFYVKNE-----LNLMK  106 (396)
T ss_dssp             CCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEE-EE--CCCSSCBCTTTCEECTTSSEEEEEETT-----TEEEE
T ss_pred             ceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcE-EE--eecCCCCccccceECCCCCEEEEEEcC-----CcEEE
Confidence            34477889999999988776  23  577778876543 22  212222222 26689999888777665     78999


Q ss_pred             EECCCCCEEEEEE-ccCceeE-------------------EEEcCCeEEEE--------eCCeEEEEEcCCceeeeEEec
Q 014977          119 WDDHQSRCIGEFA-FRSDVRS-------------------VKLSRDRIVVV--------LEHKIYVYSFVDLKLLHQIET  170 (415)
Q Consensus       119 wd~~~~~~~~~~~-~~~~i~~-------------------l~~~~~~~~~~--------~d~~i~iwd~~~~~~~~~~~~  170 (415)
                      ||+.+++...... +......                   +.++|++..++        .+..|++||+.+++...... 
T Consensus       107 ~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~-  185 (396)
T 3c5m_A          107 VDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQ-  185 (396)
T ss_dssp             EETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEE-
T ss_pred             EECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeecc-
Confidence            9999888766555 2222222                   23456665543        23579999998877654443 


Q ss_pred             cCCCcceEEEecCC-CceEEEEeCCcc-----CeEEEEEcCCcceEEEecC--ccceEEEEeCCCCCEEEEEeCC-----
Q 014977          171 LANLRGLCCLSHHS-STSVLACPGLQR-----GQVRIEHFGLNMIKLINAH--DSHIACFTLTLDGLLLATASTR-----  237 (415)
Q Consensus       171 ~~~~~~~~~~~~~~-~~~~l~~~g~~d-----g~v~i~~~~~~~~~~~~~~--~~~i~~l~~sp~g~~l~s~s~d-----  237 (415)
                      +..  .+..+.++| ++..|++.....     ..|.+++..+.....+..+  ...+..++|+|+|++|+.++.+     
T Consensus       186 ~~~--~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~  263 (396)
T 3c5m_A          186 DTA--WLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTD  263 (396)
T ss_dssp             ESS--CEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCC
T ss_pred             CCc--ccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCcc
Confidence            333  344555566 566555543211     3577777766555554443  2357889999999987776544     


Q ss_pred             CcEEEEEECCCCcEEEEEecCCCcccEEEEEeCC-CCCEEEEEe----------------CCCeEEEEEceecc
Q 014977          238 GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSP-NVQWLAVAS----------------DKGTVHIFSLRVRV  294 (415)
Q Consensus       238 g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~l~s~s----------------~dg~i~vwd~~~~~  294 (415)
                      +. |++||+.+++.......   . ... +.|+| ||++|++++                .+..|++||+.+++
T Consensus       264 ~~-l~~~d~~~g~~~~l~~~---~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~  331 (396)
T 3c5m_A          264 RV-IYKANPETLENEEVMVM---P-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKS  331 (396)
T ss_dssp             EE-EEEECTTTCCEEEEEEC---C-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTB
T ss_pred             ce-EEEEECCCCCeEEeeeC---C-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCc
Confidence            45 99999988876543322   1 123 88999 999888765                34689999988765

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.72  E-value=5.9e-15  Score=135.27  Aligned_cols=242  Identities=11%  Similarity=0.017  Sum_probs=173.6

Q ss_pred             CCCceEEEEEeCCCCEEEEEe-C------------------------CcEEEEEccCCceeEEEeccCCCeeEEEEeeeC
Q 014977           43 DEIELISVSWNQDYGCFAAGT-S------------------------CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC   97 (415)
Q Consensus        43 h~~~V~~l~~sp~g~~la~g~-d------------------------~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (415)
                      .-+.+.+++++|+|+++++.. +                        +.|.+||.++++.... .-..+-.....+++++
T Consensus        22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~-~~~~~~~~p~gia~d~  100 (329)
T 3fvz_A           22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQS-SGKNLFYLPHGLSIDT  100 (329)
T ss_dssp             CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEE-ECTTTCSSEEEEEECT
T ss_pred             ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEec-cCCCccCCceEEEECC
Confidence            356799999999999998887 5                        3689999877554322 1113334677888999


Q ss_pred             CeEEEEecCCCCCCCCCeEEEEECCCCC-EEEEEE----------ccCceeEEEEcC-CeEEEE-e---CCeEEEEEcCC
Q 014977           98 NILALVGAGDNSQYPPTKVIIWDDHQSR-CIGEFA----------FRSDVRSVKLSR-DRIVVV-L---EHKIYVYSFVD  161 (415)
Q Consensus        98 ~~~~l~s~~~d~~~~~~~i~vwd~~~~~-~~~~~~----------~~~~i~~l~~~~-~~~~~~-~---d~~i~iwd~~~  161 (415)
                      ++.++++...+     +.|++||..... .+..+.          +-.....++++| ++.+++ .   ++.|++|+ .+
T Consensus       101 ~g~l~v~d~~~-----~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~  174 (329)
T 3fvz_A          101 DGNYWVTDVAL-----HQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PS  174 (329)
T ss_dssp             TSCEEEEETTT-----TEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TT
T ss_pred             CCCEEEEECCC-----CEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CC
Confidence            99888887766     899999965442 455552          123688999999 777776 2   57899999 56


Q ss_pred             ceeeeEEeccCCC--------cceEEEecCCC-ceEEEEeCCccCeEEEEEcC-CcceEEEe--cCccceEEEEeCCCCC
Q 014977          162 LKLLHQIETLANL--------RGLCCLSHHSS-TSVLACPGLQRGQVRIEHFG-LNMIKLIN--AHDSHIACFTLTLDGL  229 (415)
Q Consensus       162 ~~~~~~~~~~~~~--------~~~~~~~~~~~-~~~l~~~g~~dg~v~i~~~~-~~~~~~~~--~~~~~i~~l~~sp~g~  229 (415)
                      ++.+..+......        .....++.+++ +.+++ +...++.|++|+.. ++.+..+.  .+...+..++|+| +.
T Consensus       175 g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v-~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~  252 (329)
T 3fvz_A          175 GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCV-ADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GF  252 (329)
T ss_dssp             SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEE-EETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TE
T ss_pred             CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEE-EECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CE
Confidence            7777666432211        12456666666 55544 46678899999887 77777764  4566788999999 43


Q ss_pred             EEEEE-------eCCCcEEEEEECCCCcEEEEEec-CCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977          230 LLATA-------STRGTLIRIFNTVDGTRLQEVRR-GVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (415)
Q Consensus       230 ~l~s~-------s~dg~~I~vwd~~~~~~~~~~~~-~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  294 (415)
                      .+++.       ..+.. |++||+.+++.+..+.. ..+...+.+|+++|+|.++++...++.|++|++....
T Consensus       253 ~~~~~g~~~v~~~~~~~-v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~~  324 (329)
T 3fvz_A          253 LFAVNGKPYFGDQEPVQ-GFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEKM  324 (329)
T ss_dssp             EEEEECCCCTTCSCCCC-EEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEECS
T ss_pred             EEEeCCCEEeccCCCcE-EEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCccc
Confidence            33333       33457 99999999999888742 1144578999999999888888889999999998654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.71  E-value=3.8e-16  Score=154.68  Aligned_cols=230  Identities=9%  Similarity=0.055  Sum_probs=164.8

Q ss_pred             CCCCC-CceEEEEEeCCCCEEEEEe----CCcEEEEEccC--CceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCC
Q 014977           40 SDVDE-IELISVSWNQDYGCFAAGT----SCGFRIYNCEP--FKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYP  112 (415)
Q Consensus        40 ~~~h~-~~V~~l~~sp~g~~la~g~----d~~v~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~  112 (415)
                      ...|. ..+..++|+|| ++++++.    +...+||.++.  .+..... .......+.++.++++..+++++..     
T Consensus        59 lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l-~~~~~~~~~~~s~dg~~~~~~s~~~-----  131 (582)
T 3o4h_A           59 LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQRL-EAVKPMRILSGVDTGEAVVFTGATE-----  131 (582)
T ss_dssp             CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCEEC-TTSCSBEEEEEEECSSCEEEEEECS-----
T ss_pred             eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccccc-cCCCCceeeeeCCCCCeEEEEecCC-----
Confidence            34444 68999999999 6666655    34567776654  3332322 2233444556666666678887766     


Q ss_pred             CCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE---eC----CeEEEEEcCCceeeeEEeccCCCcceEEEecCCC
Q 014977          113 PTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LE----HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSS  185 (415)
Q Consensus       113 ~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~---~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (415)
                       +.+.+||+.+++......+..  .+++|+|||+.++   .+    ..|++||+.+++.. .+..+..  ......++|+
T Consensus       132 -~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~--~~~~~~~SpD  205 (582)
T 3o4h_A          132 -DRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEG--SFSSASISPG  205 (582)
T ss_dssp             -SCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSC--EEEEEEECTT
T ss_pred             -CCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCC--ccccceECCC
Confidence             445599999887766555544  8899999999888   34    67999999887755 4555544  4567778888


Q ss_pred             ceEEEEeCCccC--eEEEEEcCCcceEEEecCccceEEEE--------eCCCCCEEEEEeCCCcEEEEEECCCCcEEEEE
Q 014977          186 TSVLACPGLQRG--QVRIEHFGLNMIKLINAHDSHIACFT--------LTLDGLLLATASTRGTLIRIFNTVDGTRLQEV  255 (415)
Q Consensus       186 ~~~l~~~g~~dg--~v~i~~~~~~~~~~~~~~~~~i~~l~--------~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~  255 (415)
                      ++.|+. +..++  .|++|+..+.....+..|...+..++        |+|||.++++++.++. +++|++  |+.+.  
T Consensus       206 G~~l~~-~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~-~~l~~~--g~~~~--  279 (582)
T 3o4h_A          206 MKVTAG-LETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGR-SAVFID--GERVE--  279 (582)
T ss_dssp             SCEEEE-EECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTE-EEEEET--TEEEC--
T ss_pred             CCEEEE-ccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCc-EEEEEE--CCeec--
Confidence            888884 55677  78888887665556667777777777        9999999999999999 999999  66543  


Q ss_pred             ecCCCcccEEEEEeCCCCCEEEEEeCCCe---EEEEEcee
Q 014977          256 RRGVDRAEIYSIALSPNVQWLAVASDKGT---VHIFSLRV  292 (415)
Q Consensus       256 ~~~~~~~~v~~l~~spdg~~l~s~s~dg~---i~vwd~~~  292 (415)
                       .  ..+.+.+++|+ +++++++++.+.+   +++|++..
T Consensus       280 -~--~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~  315 (582)
T 3o4h_A          280 -A--PQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE  315 (582)
T ss_dssp             -C--CSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred             -c--CCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence             2  34578999999 9999998887753   66666543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.70  E-value=1.6e-15  Score=142.02  Aligned_cols=248  Identities=10%  Similarity=0.039  Sum_probs=158.1

Q ss_pred             CCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCC----------
Q 014977           41 DVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNS----------  109 (415)
Q Consensus        41 ~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~----------  109 (415)
                      .++...+..+.|+|||+.|+.+. ++.+++||+++.+.......+........+.+++++..++....+.          
T Consensus        77 ~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~  156 (388)
T 3pe7_A           77 EGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWK  156 (388)
T ss_dssp             CSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHH
T ss_pred             eCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccc
Confidence            34445555778999999999998 8899999999876554444323222223344578877666311000          


Q ss_pred             -------CCCCCeEEEEECCCCCEEEEEEccCceeEEEEcC-CeEEEE--e-------CCeEEEEEcCCceeeeEEeccC
Q 014977          110 -------QYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSR-DRIVVV--L-------EHKIYVYSFVDLKLLHQIETLA  172 (415)
Q Consensus       110 -------~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~-~~~~~~--~-------d~~i~iwd~~~~~~~~~~~~~~  172 (415)
                             .-.+..|.+||+.+++......+...+..+.|+| |+..++  .       ...|.++|+..++. ..+..+.
T Consensus       157 ~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~  235 (388)
T 3pe7_A          157 KFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHA  235 (388)
T ss_dssp             HHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCC
T ss_pred             hhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCC
Confidence                   0012789999999998776666778899999999 998877  2       23788888765443 3333332


Q ss_pred             CCcceEEEecCCCceEEEEeCCccC----eEEEEEcCCcceEEEecCccc------eEEEEeCCCCCEEEEE--------
Q 014977          173 NLRGLCCLSHHSSTSVLACPGLQRG----QVRIEHFGLNMIKLINAHDSH------IACFTLTLDGLLLATA--------  234 (415)
Q Consensus       173 ~~~~~~~~~~~~~~~~l~~~g~~dg----~v~i~~~~~~~~~~~~~~~~~------i~~l~~sp~g~~l~s~--------  234 (415)
                      ....+....++|+++.|++.+..++    .|++|+........+......      ...++|+|||+.|+..        
T Consensus       236 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~  315 (388)
T 3pe7_A          236 EGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYK  315 (388)
T ss_dssp             TTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-----------
T ss_pred             CCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccc
Confidence            2123455667778876765443322    388888776554444322210      1223689999987754        


Q ss_pred             -eCCCcEEEEEECCCCcEEEEEecCCCcc-----------cEEEEEeCCCCCEEEEEeC-CCeEEEEEceec
Q 014977          235 -STRGTLIRIFNTVDGTRLQEVRRGVDRA-----------EIYSIALSPNVQWLAVASD-KGTVHIFSLRVR  293 (415)
Q Consensus       235 -s~dg~~I~vwd~~~~~~~~~~~~~~~~~-----------~v~~l~~spdg~~l~s~s~-dg~i~vwd~~~~  293 (415)
                       ..+.. |++||+.+++.. .+..  +..           .+..++|+|||++|+..+. +|...||.++-.
T Consensus       316 ~~~~~~-i~~~d~~~~~~~-~l~~--~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~  383 (388)
T 3pe7_A          316 IENDPF-LYVFNMKNGTQH-RVAR--HDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLP  383 (388)
T ss_dssp             -CCCCE-EEEEETTTTEEE-EEEE--CCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECC
T ss_pred             cCCCCE-EEEEeccCCceE-Eecc--ccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECC
Confidence             44556 999999887654 4444  333           4678899999998887664 666666665543

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.69  E-value=2.9e-14  Score=131.39  Aligned_cols=222  Identities=9%  Similarity=0.002  Sum_probs=145.3

Q ss_pred             CCceEEEEEeCCCCEEEEEe----------CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCC
Q 014977           44 EIELISVSWNQDYGCFAAGT----------SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPP  113 (415)
Q Consensus        44 ~~~V~~l~~sp~g~~la~g~----------d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~  113 (415)
                      -..+..+++  ||++++...          ++.|.+|++++.+...   +    ..+..+.|+|++..++....+..-..
T Consensus        14 ~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~---l----~~~~~~~~SpDg~~la~~~~~~~~~~   84 (347)
T 2gop_A           14 FAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF---I----ENATMPRISPDGKKIAFMRANEEKKV   84 (347)
T ss_dssp             SCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE---E----ESCEEEEECTTSSEEEEEEEETTTTE
T ss_pred             eEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE---c----ccCCCeEECCCCCEEEEEEeccCCCc
Confidence            356788888  899888642          4568888888754321   2    34667889999876665543200001


Q ss_pred             CeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE--e-C---------------------------CeEEEEEcCCce
Q 014977          114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--L-E---------------------------HKIYVYSFVDLK  163 (415)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~-d---------------------------~~i~iwd~~~~~  163 (415)
                      ..|.+|++.+++......... +..+.|+||++.++  . +                           ..|++||+.+++
T Consensus        85 ~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~  163 (347)
T 2gop_A           85 SEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE  163 (347)
T ss_dssp             EEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE
T ss_pred             ceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe
Confidence            358888988887766665555 99999999998776  2 2                           579999998887


Q ss_pred             eeeEEeccCCCcceEEEecCCCceEEEEeCCcc------C-eEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeC
Q 014977          164 LLHQIETLANLRGLCCLSHHSSTSVLACPGLQR------G-QVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATAST  236 (415)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d------g-~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~  236 (415)
                      .+..+.. .   .+..+.++|++ ++++ +..+      . ...||..+......+..+ ..+..+  +|+|++|+.++.
T Consensus       164 ~~~~l~~-~---~~~~~~~spdg-~~~~-~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~~~--spdg~~l~~~~~  234 (347)
T 2gop_A          164 VIEEFEK-P---RFSSGIWHRDK-IVVN-VPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFYAV--DSDGERILLYGK  234 (347)
T ss_dssp             EEEEEEE-E---TTCEEEEETTE-EEEE-EECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEEEE--EECSSCEEEEEC
T ss_pred             EEeeecC-C---CcccccCCCCe-EEEE-EecccccccccccccEEEeCCCceEEeccC-cceeeE--CCCCCEEEEEEc
Confidence            7455544 2   33445555677 5444 3222      1 334433224344555544 555544  999998887764


Q ss_pred             C--------CcEEEEEECCCCcEEEEEecCCCcccEEE-EEeCCCCCEEEEEeCCCeEEEEEcee
Q 014977          237 R--------GTLIRIFNTVDGTRLQEVRRGVDRAEIYS-IALSPNVQWLAVASDKGTVHIFSLRV  292 (415)
Q Consensus       237 d--------g~~I~vwd~~~~~~~~~~~~~~~~~~v~~-l~~spdg~~l~s~s~dg~i~vwd~~~  292 (415)
                      +        .. |.+||  +++.......  +...+.. +.|+ |+ ++++++.++.++|| +.+
T Consensus       235 ~~~~~~~~~~~-l~~~d--~~~~~~l~~~--~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~  291 (347)
T 2gop_A          235 PEKKYMSEHNK-LYIYD--GKEVMGILDE--VDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWD  291 (347)
T ss_dssp             CSSSCCCSSCE-EEEEC--SSCEEESSTT--CCSEEEEEEEET-TE-EEEEEEETTEEEEE-EES
T ss_pred             cccCCccccce-EEEEC--CCceEecccc--CCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcC
Confidence            4        35 88888  5654433332  4567876 9999 88 88999999999999 883

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.68  E-value=1.1e-13  Score=123.81  Aligned_cols=235  Identities=13%  Similarity=0.140  Sum_probs=169.5

Q ss_pred             CeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEc-------cCceeEEEE-cCCeEEEE-e---CCeE
Q 014977           87 GFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAF-------RSDVRSVKL-SRDRIVVV-L---EHKI  154 (415)
Q Consensus        87 ~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~-------~~~i~~l~~-~~~~~~~~-~---d~~i  154 (415)
                      -.....+++++++.++++...+     +.|.+||.. ++.+..+..       ...+..+++ .+++.+++ .   ++.|
T Consensus        29 ~~~p~~v~~~~~g~l~v~~~~~-----~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i  102 (286)
T 1q7f_A           29 FTEPSGVAVNAQNDIIVADTNN-----HRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQI  102 (286)
T ss_dssp             BSCEEEEEECTTCCEEEEEGGG-----TEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEE
T ss_pred             cCCCceEEECCCCCEEEEECCC-----CEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEE
Confidence            3457788889988888776655     899999976 777666642       246889999 57777766 3   7899


Q ss_pred             EEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEe--cCccceEEEEeCCCCCEEE
Q 014977          155 YVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLIN--AHDSHIACFTLTLDGLLLA  232 (415)
Q Consensus       155 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~--~~~~~i~~l~~sp~g~~l~  232 (415)
                      ++|| .+++.+..+.... ......+..++++.++++ ...++.|.+|+..++.+..+.  .+...+..++++++|++++
T Consensus       103 ~~~d-~~g~~~~~~~~~~-~~~~~~i~~~~~g~l~v~-~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v  179 (286)
T 1q7f_A          103 QIYN-QYGQFVRKFGATI-LQHPRGVTVDNKGRIIVV-ECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFI  179 (286)
T ss_dssp             EEEC-TTSCEEEEECTTT-CSCEEEEEECTTSCEEEE-ETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEE
T ss_pred             EEEC-CCCcEEEEecCcc-CCCceEEEEeCCCCEEEE-ECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEE
Confidence            9999 6677766664321 124566777777776654 456788999988877766664  3445689999999999888


Q ss_pred             EEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCC-eEEEEEceecccCCCCCCCCCCCCcccc
Q 014977          233 TASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKG-TVHIFSLRVRVVGEDSSSSLSTPSQSTE  311 (415)
Q Consensus       233 s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~  311 (415)
                      +...++. |++||. +++.+..+....+...+..++++++|+++++...++ .|.+|+.. ++..               
T Consensus       180 ~~~~~~~-i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~---------------  241 (286)
T 1q7f_A          180 SDNRAHC-VKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLI---------------  241 (286)
T ss_dssp             EEGGGTE-EEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEE---------------
T ss_pred             EECCCCE-EEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEE---------------
Confidence            8777888 999997 667776765421235689999999999888887776 99999853 2211               


Q ss_pred             cccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeC--CCceEEEEecCCCEEEEEEeCCcEEEEEEec
Q 014977          312 LLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIP--EVTHFIAAFGSQNTVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~dg~~~~~~~~~  389 (415)
                                                               ..+..+  ......+++.+++++++++.++.|++|.+..
T Consensus       242 -----------------------------------------~~~~~~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~~  280 (286)
T 1q7f_A          242 -----------------------------------------SALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQ  280 (286)
T ss_dssp             -----------------------------------------EEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECSC
T ss_pred             -----------------------------------------EEEcccCCCCcceeEEECCCCcEEEECCCCeEEEEEccc
Confidence                                                     111111  1224467888998899988899999998754

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.68  E-value=2.6e-14  Score=131.02  Aligned_cols=236  Identities=13%  Similarity=0.101  Sum_probs=159.1

Q ss_pred             CceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCC
Q 014977           45 IELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ  123 (415)
Q Consensus        45 ~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~  123 (415)
                      ..|.+++|++++..++... ++.++.|.-   +...  .+..+......+.|++++.+++++..+     +.|.+||..+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~g~l~~~~~~~-----~~i~~~d~~~   75 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTITA---EPWL--EISKKGLQLEGLNFDRQGQLFLLDVFE-----GNIFKINPET   75 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEEEC---EEEE--EEESSCCCEEEEEECTTSCEEEEETTT-----CEEEEECTTT
T ss_pred             cccceeeecCCccceeEEeecccCccccc---ceeE--EEeccCccccCcEECCCCCEEEEECCC-----CEEEEEeCCC
Confidence            3477788899887776655 888889832   2222  222455566788899999887776665     8999999988


Q ss_pred             CCEEEEEE-ccCceeEEEEcCCeEEEE--e-C----CeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCc
Q 014977          124 SRCIGEFA-FRSDVRSVKLSRDRIVVV--L-E----HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ  195 (415)
Q Consensus       124 ~~~~~~~~-~~~~i~~l~~~~~~~~~~--~-d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  195 (415)
                      ++...... +...+.++++++++.+++  . +    +.|.+||..+++....+........+..+..++++.++++....
T Consensus        76 ~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~  155 (333)
T 2dg1_A           76 KEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRG  155 (333)
T ss_dssp             CCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCC
T ss_pred             CcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccc
Confidence            88765553 567899999999998776  2 2    48999998876654333322222345667777788776653211


Q ss_pred             -----cCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEE-eCCCcEEEEEECCC-CcEEEEE-----ecCCCccc
Q 014977          196 -----RGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATA-STRGTLIRIFNTVD-GTRLQEV-----RRGVDRAE  263 (415)
Q Consensus       196 -----dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~-s~dg~~I~vwd~~~-~~~~~~~-----~~~~~~~~  263 (415)
                           .+.|..++.....+..+..+...+..++|+|+|+.|+.+ +.++. |.+||+.+ +..+..+     ........
T Consensus       156 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~-i~~~d~~~~g~~~~~~~~~~~~~~~~~~~  234 (333)
T 2dg1_A          156 YSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANR-LHRIALEDDGVTIQPFGATIPYYFTGHEG  234 (333)
T ss_dssp             BTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTE-EEEEEECTTSSSEEEEEEEEEEECCSSSE
T ss_pred             cccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCe-EEEEEecCCCcCcccccceEEEecCCCCC
Confidence                 244555555544444444444567899999999866544 55777 99999864 4333221     11001136


Q ss_pred             EEEEEeCCCCCEEEEEeCCCeEEEEEce
Q 014977          264 IYSIALSPNVQWLAVASDKGTVHIFSLR  291 (415)
Q Consensus       264 v~~l~~spdg~~l~s~s~dg~i~vwd~~  291 (415)
                      +..++++++|+++++...++.|.+||.+
T Consensus       235 ~~~i~~d~~G~l~v~~~~~~~v~~~d~~  262 (333)
T 2dg1_A          235 PDSCCIDSDDNLYVAMYGQGRVLVFNKR  262 (333)
T ss_dssp             EEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             CCceEECCCCCEEEEEcCCCEEEEECCC
Confidence            7889999999988888788899999873

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.67  E-value=6.2e-15  Score=148.16  Aligned_cols=240  Identities=10%  Similarity=-0.045  Sum_probs=159.6

Q ss_pred             cCCCCCCceEEEEEeCCCCEEEEE--e-CCcEEEEEccCCceeEEEeccCCCeeEE---------EEeee--CCeEE-EE
Q 014977           39 FSDVDEIELISVSWNQDYGCFAAG--T-SCGFRIYNCEPFKETFRRDLKSGGFRIV---------EMLFR--CNILA-LV  103 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~g~~la~g--~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~---------~~~~~--~~~~~-l~  103 (415)
                      ...+|...|..++|++++-+++..  . ++...||.....+....  +..+...+.         .+.|+  ||+.. ++
T Consensus        18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la   95 (662)
T 3azo_A           18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEES--ALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV   95 (662)
T ss_dssp             HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEE--SSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred             HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcce--eCCCCccccccccccCCccceeeeecCCCeEEE
Confidence            345688899999999987777777  4 77899999754343332  323333333         34444  87765 55


Q ss_pred             ecCCCCCCCCCeEEEEECC--C-CCEEEEEE-----ccCceeEEEEcCCeEEEE---eC----------CeEEEEEcCC-
Q 014977          104 GAGDNSQYPPTKVIIWDDH--Q-SRCIGEFA-----FRSDVRSVKLSRDRIVVV---LE----------HKIYVYSFVD-  161 (415)
Q Consensus       104 s~~~d~~~~~~~i~vwd~~--~-~~~~~~~~-----~~~~i~~l~~~~~~~~~~---~d----------~~i~iwd~~~-  161 (415)
                      .....    +..|.++++.  . ++......     +...+..++|+|||+.++   .+          ..|++||+.+ 
T Consensus        96 ~~~~~----~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  171 (662)
T 3azo_A           96 FTHFG----DQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGS  171 (662)
T ss_dssp             EEBTT----TCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTST
T ss_pred             EEECC----CCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCC
Confidence            44331    2778888876  3 44332222     345788999999998877   33          4899999987 


Q ss_pred             -----ceeeeEEe-ccCCCcceEEEecCCCceEEEEeCCcc-------CeEEEEEcCC-c---ceEEE-ecCccceEEEE
Q 014977          162 -----LKLLHQIE-TLANLRGLCCLSHHSSTSVLACPGLQR-------GQVRIEHFGL-N---MIKLI-NAHDSHIACFT  223 (415)
Q Consensus       162 -----~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~g~~d-------g~v~i~~~~~-~---~~~~~-~~~~~~i~~l~  223 (415)
                           ++.. .+. .+..  ....+.++|+++.|++++...       ..|++|+... .   ....+ ..|...+..++
T Consensus       172 ~~~~~~~~~-~l~~~~~~--~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~  248 (662)
T 3azo_A          172 AAADRSAVR-ELSDDAHR--FVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAE  248 (662)
T ss_dssp             TTTCGGGSE-ESSCSCSS--EECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEE
T ss_pred             ccccCCcee-EEEecCCC--cccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceE
Confidence                 5443 333 3222  445566777888887754222       4788888762 3   33444 44578899999


Q ss_pred             eCCCCCEEEEEeCCC--cEEEEEECCCCcEEEEEecCCCccc--------EEEEEeCCCCCEEEEEeCCCeEEEEEce
Q 014977          224 LTLDGLLLATASTRG--TLIRIFNTVDGTRLQEVRRGVDRAE--------IYSIALSPNVQWLAVASDKGTVHIFSLR  291 (415)
Q Consensus       224 ~sp~g~~l~s~s~dg--~~I~vwd~~~~~~~~~~~~~~~~~~--------v~~l~~spdg~~l~s~s~dg~i~vwd~~  291 (415)
                      |+|||+++++++.++  . |.+||+.+++.......  +...        +..++|+|+++++++++. +.++||.++
T Consensus       249 ~spdg~l~~~~~~~~~~~-l~~~~~~~~~~~~l~~~--~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d  322 (662)
T 3azo_A          249 WAPDGSLIVATDRTGWWN-LHRVDPATGAATQLCRR--EEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD  322 (662)
T ss_dssp             ECTTSCEEEEECTTSSCE-EEEECTTTCCEEESSCC--SSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred             ECCCCeEEEEECCCCCeE-EEEEECCCCceeecccc--cccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence            999999888888887  5 77777767765433332  2111        567899999999999998 999999655

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.65  E-value=3e-13  Score=121.78  Aligned_cols=233  Identities=8%  Similarity=-0.062  Sum_probs=162.8

Q ss_pred             CCCCCCceEEEEEeCCCC-EEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977           40 SDVDEIELISVSWNQDYG-CFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (415)
Q Consensus        40 ~~~h~~~V~~l~~sp~g~-~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~  117 (415)
                      ...+.....+++|+|+|+ +++++. ++.|..|+.++.  ...  +......+..+.+++++.++++...+     +.|.
T Consensus        23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~--~~~~~~~~~~l~~~~dg~l~v~~~~~-----~~i~   93 (296)
T 3e5z_A           23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSP--EMHPSHHQNGHCLNKQGHLIACSHGL-----RRLE   93 (296)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEE--EESSCSSEEEEEECTTCCEEEEETTT-----TEEE
T ss_pred             EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEE--EECCCCCcceeeECCCCcEEEEecCC-----CeEE
Confidence            344566788999999998 677777 899999998875  222  22445567889999999888877655     8999


Q ss_pred             EEECCCCCEEEEEEc-----cCceeEEEEcCCeEEEEe--------------------CCeEEEEEcCCceeeeEEeccC
Q 014977          118 IWDDHQSRCIGEFAF-----RSDVRSVKLSRDRIVVVL--------------------EHKIYVYSFVDLKLLHQIETLA  172 (415)
Q Consensus       118 vwd~~~~~~~~~~~~-----~~~i~~l~~~~~~~~~~~--------------------d~~i~iwd~~~~~~~~~~~~~~  172 (415)
                      +||..+++.......     ...+.+++++|+|.+++.                    .+.|+.++.. ++. ..+..+.
T Consensus        94 ~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~  171 (296)
T 3e5z_A           94 RQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRDR  171 (296)
T ss_dssp             EECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECCC
T ss_pred             EEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecCC
Confidence            999888876544331     235678999999988873                    2356666654 443 3333332


Q ss_pred             CCcceEEEecCCCceEEEEeCCccCeEEEEEcC--Ccc---eEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECC
Q 014977          173 NLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG--LNM---IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTV  247 (415)
Q Consensus       173 ~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~--~~~---~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~  247 (415)
                      .  ....+.+++++..+ ++...++.|.+|+..  +..   ...+..+...+..++++++|+++++.  ++. |.+||..
T Consensus       172 ~--~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~-v~~~~~~  245 (296)
T 3e5z_A          172 V--KPNGLAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDG-VHVLTPD  245 (296)
T ss_dssp             S--SEEEEEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTE-EEEECTT
T ss_pred             C--CCccEEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCe-EEEECCC
Confidence            2  34556677777777 556678899998764  222   22333345567789999999976665  777 9999975


Q ss_pred             CCcEEEEEecCCCcccEEEEEe-CCCCCEEEEEeCCCeEEEEEceecc
Q 014977          248 DGTRLQEVRRGVDRAEIYSIAL-SPNVQWLAVASDKGTVHIFSLRVRV  294 (415)
Q Consensus       248 ~~~~~~~~~~~~~~~~v~~l~~-spdg~~l~s~s~dg~i~vwd~~~~~  294 (415)
                       ++.+..+..  +.. +.+++| +|+++.|++++.++ +.-++.++++
T Consensus       246 -g~~~~~~~~--~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~  288 (296)
T 3e5z_A          246 -GDELGRVLT--PQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRG  288 (296)
T ss_dssp             -SCEEEEEEC--SSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCB
T ss_pred             -CCEEEEEEC--CCC-ceeEEEECCCCCEEEEEcCCe-EEEEEccccc
Confidence             888878876  444 889999 68999999888764 4445554443

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.64  E-value=9.7e-16  Score=155.58  Aligned_cols=191  Identities=14%  Similarity=0.112  Sum_probs=135.0

Q ss_pred             EEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccC----ceeEEEEcCCeEEEE---e---------CCeEE
Q 014977           92 EMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRS----DVRSVKLSRDRIVVV---L---------EHKIY  155 (415)
Q Consensus        92 ~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~----~i~~l~~~~~~~~~~---~---------d~~i~  155 (415)
                      .+.|++++.+++++. +     +.|++||+.+++....+.+..    .+.+++|+|||+.++   .         ++.|+
T Consensus        20 ~~~~s~dg~~~~~~~-d-----~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~   93 (719)
T 1z68_A           20 FPNWISGQEYLHQSA-D-----NNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYY   93 (719)
T ss_dssp             CCEESSSSEEEEECT-T-----SCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             ccEECCCCeEEEEcC-C-----CCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEE
Confidence            567899997776654 5     999999999999887776432    489999999999887   2         48999


Q ss_pred             EEEcCCceee--eEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEe--cCccce------------
Q 014977          156 VYSFVDLKLL--HQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLIN--AHDSHI------------  219 (415)
Q Consensus       156 iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~--~~~~~i------------  219 (415)
                      +||+.+++.+  ..+.   .  .+..+.++|+|+.|+++  .++.|++|+........+.  ++...+            
T Consensus        94 ~~d~~~g~~~~~~~l~---~--~~~~~~~SPDG~~la~~--~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee  166 (719)
T 1z68_A           94 IYDLSNGEFVRGNELP---R--PIQYLCWSPVGSKLAYV--YQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEE  166 (719)
T ss_dssp             EEETTTTEECCSSCCC---S--SBCCEEECSSTTCEEEE--ETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHH
T ss_pred             EEECCCCccccceecC---c--ccccceECCCCCEEEEE--ECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeee
Confidence            9999988763  2221   2  23445666677788875  4789999987654443332  222212            


Q ss_pred             -----EEEEeCCCCCEEEEEeCCC----------------------------------cEEEEEECCCCcEE--EEEec-
Q 014977          220 -----ACFTLTLDGLLLATASTRG----------------------------------TLIRIFNTVDGTRL--QEVRR-  257 (415)
Q Consensus       220 -----~~l~~sp~g~~l~s~s~dg----------------------------------~~I~vwd~~~~~~~--~~~~~-  257 (415)
                           .+++|+|||++|++++.|.                                  . |++||+.+++..  ..+.. 
T Consensus       167 ~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~-l~~~d~~~~~~~~~~~~~~~  245 (719)
T 1z68_A          167 MLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVR-IFIIDTTYPAYVGPQEVPVP  245 (719)
T ss_dssp             TTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEE-EEEEESSCHHHHCCEECCCC
T ss_pred             cccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeE-EEEEECCCCCccceeEccCC
Confidence                 4899999999999987652                                  5 889999887642  12211 


Q ss_pred             ---CCCcccEEEEEeCCCCCEEEEEeCC----CeEEEEE----ceecccC
Q 014977          258 ---GVDRAEIYSIALSPNVQWLAVASDK----GTVHIFS----LRVRVVG  296 (415)
Q Consensus       258 ---~~~~~~v~~l~~spdg~~l~s~s~d----g~i~vwd----~~~~~~~  296 (415)
                         ..+...+..++|+||++++++....    ..|.+||    +.+++..
T Consensus       246 ~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~  295 (719)
T 1z68_A          246 AMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCP  295 (719)
T ss_dssp             HHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECC
T ss_pred             ccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceE
Confidence               0156689999999998877774432    2488888    6666543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.64  E-value=1.4e-13  Score=126.01  Aligned_cols=206  Identities=9%  Similarity=0.084  Sum_probs=145.0

Q ss_pred             eeEEEEeeeCCeEEEEecCCCCCC-------------------CCCeEEEEECCCCCEEEEEE--ccCceeEEEEcCCeE
Q 014977           88 FRIVEMLFRCNILALVGAGDNSQY-------------------PPTKVIIWDDHQSRCIGEFA--FRSDVRSVKLSRDRI  146 (415)
Q Consensus        88 ~~~~~~~~~~~~~~l~s~~~d~~~-------------------~~~~i~vwd~~~~~~~~~~~--~~~~i~~l~~~~~~~  146 (415)
                      ..+..+++++++.++++...+...                   .++.|.+||..+++.+..+.  +-.....+++++++.
T Consensus        24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~  103 (329)
T 3fvz_A           24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN  103 (329)
T ss_dssp             SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC
T ss_pred             CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC
Confidence            347778888988887776654110                   12479999999999877665  335788999999998


Q ss_pred             EEE---eCCeEEEEEcCCce-eeeEEec-------cCCCcceEEEecCC-CceEEEEeCCccCeEEEEEcCCcceEEEec
Q 014977          147 VVV---LEHKIYVYSFVDLK-LLHQIET-------LANLRGLCCLSHHS-STSVLACPGLQRGQVRIEHFGLNMIKLINA  214 (415)
Q Consensus       147 ~~~---~d~~i~iwd~~~~~-~~~~~~~-------~~~~~~~~~~~~~~-~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~  214 (415)
                      +++   .++.|++||..... .+..+..       .........+++++ ++.++++.+..++.|++|+.++..+..+..
T Consensus       104 l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~  183 (329)
T 3fvz_A          104 YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGE  183 (329)
T ss_dssp             EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEEECE
T ss_pred             EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEecc
Confidence            776   46899999975432 4444421       11122456677777 566665532258899999888877776643


Q ss_pred             C----------ccceEEEEeCCC-CCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEE-----
Q 014977          215 H----------DSHIACFTLTLD-GLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAV-----  278 (415)
Q Consensus       215 ~----------~~~i~~l~~sp~-g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s-----  278 (415)
                      .          -.....|+++|+ |.++++...++. |++||..+++.+..+....+...+..++|+| +..+++     
T Consensus       184 ~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~-I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~  261 (329)
T 3fvz_A          184 ESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGR-IQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPY  261 (329)
T ss_dssp             ECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTE-EEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCC
T ss_pred             CCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCE-EEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEE
Confidence            2          234789999998 777777777888 9999998899998886544566788999999 433333     


Q ss_pred             --EeCCCeEEEEEceeccc
Q 014977          279 --ASDKGTVHIFSLRVRVV  295 (415)
Q Consensus       279 --~s~dg~i~vwd~~~~~~  295 (415)
                        ...+..|++|++.+++.
T Consensus       262 v~~~~~~~v~~~~~~~g~~  280 (329)
T 3fvz_A          262 FGDQEPVQGFVMNFSSGEI  280 (329)
T ss_dssp             TTCSCCCCEEEEETTTCCE
T ss_pred             eccCCCcEEEEEEcCCCeE
Confidence              33445899999887763

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.63  E-value=9.4e-12  Score=111.62  Aligned_cols=234  Identities=10%  Similarity=-0.019  Sum_probs=162.2

Q ss_pred             CCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEE
Q 014977           42 VDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD  120 (415)
Q Consensus        42 ~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd  120 (415)
                      .+...+.++++.++|.++++.. ++.|.+|+.+ .. .....+......+..+.+++++.++++...+     +.|..||
T Consensus        12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-----~~i~~~~   84 (299)
T 2z2n_A           12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GK-ITEYPLPTPDAKVMCLTISSDGEVWFTENAA-----NKIGRIT   84 (299)
T ss_dssp             SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEEEECSSTTCCEEEEEECTTSCEEEEETTT-----TEEEEEC
T ss_pred             CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CC-eEEecCCcccCceeeEEECCCCCEEEeCCCC-----CeEEEEC
Confidence            3456799999999999888776 7889999987 33 2332332345667888899988877776654     8899999


Q ss_pred             CCCCCEEEEEE---ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCC
Q 014977          121 DHQSRCIGEFA---FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL  194 (415)
Q Consensus       121 ~~~~~~~~~~~---~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  194 (415)
                      .. ++. ..+.   ....+.++++.+++.+.+   .++.|.+||. +++... +...........+..++++.++++ ..
T Consensus        85 ~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~-~~  159 (299)
T 2z2n_A           85 KK-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIRE-YELPNKGSYPSFITLGSDNALWFT-EN  159 (299)
T ss_dssp             TT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSCEEEE-ET
T ss_pred             CC-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEE-ecCCCCCCCCceEEEcCCCCEEEE-eC
Confidence            75 443 3333   345788999999887776   3678999998 554432 222222234566777777766654 44


Q ss_pred             ccCeEEEEEcCCcceEE-EecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCC
Q 014977          195 QRGQVRIEHFGLNMIKL-INAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNV  273 (415)
Q Consensus       195 ~dg~v~i~~~~~~~~~~-~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg  273 (415)
                      .++.|..++.+++.... +......+..++++++|+++++...++. |.+||. +++.. .+........+.+++++++|
T Consensus       160 ~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~-i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g  236 (299)
T 2z2n_A          160 QNNAIGRITESGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNK-IGRITT-SGEIT-EFKIPTPNARPHAITAGAGI  236 (299)
T ss_dssp             TTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE-EEEECT-TCCEE-EEECSSTTCCEEEEEECSTT
T ss_pred             CCCEEEEEcCCCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCce-EEEECC-CCcEE-EEECCCCCCCceeEEECCCC
Confidence            56778877764433322 2234456889999999997777666788 999998 77644 34322234578999999999


Q ss_pred             CEEEEEeCCCeEEEEEc
Q 014977          274 QWLAVASDKGTVHIFSL  290 (415)
Q Consensus       274 ~~l~s~s~dg~i~vwd~  290 (415)
                      +++++...++.|.+||.
T Consensus       237 ~l~v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          237 DLWFTEWGANKIGRLTS  253 (299)
T ss_dssp             CEEEEETTTTEEEEEET
T ss_pred             CEEEeccCCceEEEECC
Confidence            97766657788999997

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.62  E-value=4e-13  Score=119.66  Aligned_cols=185  Identities=14%  Similarity=0.109  Sum_probs=145.6

Q ss_pred             eEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEcc--CceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEeccCCCc
Q 014977           99 ILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFR--SDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLR  175 (415)
Q Consensus        99 ~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~--~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~  175 (415)
                      +.++++++.+     +.|.+||.++|+.+.++...  ..+.++.+.|+|++++ .++.|+.||. +++.+..+..+.. .
T Consensus         5 ~~~lv~~~~~-----~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs~~~~V~~~d~-~G~~~W~~~~~~~-~   77 (276)
T 3no2_A            5 QHLLVGGSGW-----NKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFSYSKGAKMITR-DGRELWNIAAPAG-C   77 (276)
T ss_dssp             CEEEEECTTC-----SEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEECBSEEEEECT-TSCEEEEEECCTT-C
T ss_pred             CcEEEeeCCC-----CEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEeCCCCEEEECC-CCCEEEEEcCCCC-c
Confidence            4566677766     99999999999999999843  4789999999999888 7888999998 8999988876421 2


Q ss_pred             ceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEec------CccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC
Q 014977          176 GLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINA------HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG  249 (415)
Q Consensus       176 ~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~------~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~  249 (415)
                      .+....+.+++.++++.+..++.|..++.+++.+..+..      +......+++.++|++|++...++. |.+||.. |
T Consensus        78 ~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~-v~~~d~~-G  155 (276)
T 3no2_A           78 EMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSE-VREIAPN-G  155 (276)
T ss_dssp             EEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTE-EEEECTT-S
T ss_pred             cccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCE-EEEECCC-C
Confidence            445666777888887643226667667778877766652      2234556778999999999999999 9999987 9


Q ss_pred             cEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceeccc
Q 014977          250 TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV  295 (415)
Q Consensus       250 ~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~  295 (415)
                      +.+.++...   ..+.++.+.++|++++++..++.|..+|.++++.
T Consensus       156 ~~~w~~~~~---~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~  198 (276)
T 3no2_A          156 QLLNSVKLS---GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRI  198 (276)
T ss_dssp             CEEEEEECS---SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCE
T ss_pred             CEEEEEECC---CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcE
Confidence            999998863   3456678889999999998888999999888774

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.61  E-value=7.8e-14  Score=141.32  Aligned_cols=246  Identities=11%  Similarity=0.015  Sum_probs=165.4

Q ss_pred             CCCCCceEEEEEeCCCCEEEEEe--CC----cEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCC----
Q 014977           41 DVDEIELISVSWNQDYGCFAAGT--SC----GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQ----  110 (415)
Q Consensus        41 ~~h~~~V~~l~~sp~g~~la~g~--d~----~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~----  110 (415)
                      .+|...+..++|||||++||.+.  .|    .|++||+++++.... .+  ....+..+.|+||+..|+.+..+..    
T Consensus       121 ~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~-~~--~~~~~~~~~wspDg~~l~~~~~~~~~~~~  197 (710)
T 2xdw_A          121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-VL--ERVKFSCMAWTHDGKGMFYNAYPQQDGKS  197 (710)
T ss_dssp             TTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-EE--EEECSCCEEECTTSSEEEEEECCCCSSCC
T ss_pred             cCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc-cc--cCcccceEEEEeCCCEEEEEEECCccccc
Confidence            34555789999999999999776  33    799999988654332 22  1122456889999876665554411    


Q ss_pred             -------CCCCeEEEEECCCCCE--EEEEE---ccCceeEEEEcCCeEEEE---e-----CCeEEEEEcCC------ce-
Q 014977          111 -------YPPTKVIIWDDHQSRC--IGEFA---FRSDVRSVKLSRDRIVVV---L-----EHKIYVYSFVD------LK-  163 (415)
Q Consensus       111 -------~~~~~i~vwd~~~~~~--~~~~~---~~~~i~~l~~~~~~~~~~---~-----d~~i~iwd~~~------~~-  163 (415)
                             .....|++|++.+++.  ...+.   +...+..+.|+||+++++   .     +..|++||+.+      ++ 
T Consensus       198 ~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~  277 (710)
T 2xdw_A          198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL  277 (710)
T ss_dssp             SSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC
T ss_pred             cccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc
Confidence                   1124599999988762  22223   344578999999999877   2     56899999976      43 


Q ss_pred             eeeEEeccCCCcceEEEecCCCceEEEEeCCcc---CeEEEEEcCCc---ceEEEecCcc--ceEEEEeCCCCCEEEEEe
Q 014977          164 LLHQIETLANLRGLCCLSHHSSTSVLACPGLQR---GQVRIEHFGLN---MIKLINAHDS--HIACFTLTLDGLLLATAS  235 (415)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d---g~v~i~~~~~~---~~~~~~~~~~--~i~~l~~sp~g~~l~s~s  235 (415)
                      ....+..+..... ..+.+  ++..|++.+..+   +.|.+++....   ..+.+..|..  .+..++|++++.++++..
T Consensus       278 ~~~~l~~~~~~~~-~~~s~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~  354 (710)
T 2xdw_A          278 KWVKLIDNFEGEY-DYVTN--EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYL  354 (710)
T ss_dssp             CCEEEECSSSSCE-EEEEE--ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEE
T ss_pred             ceEEeeCCCCcEE-EEEec--cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEE
Confidence            3455555444322 23444  444454444333   36777776653   2355655544  678899998888888888


Q ss_pred             CCCc-EEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEE-e---CCCeEEEEEceecc
Q 014977          236 TRGT-LIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVA-S---DKGTVHIFSLRVRV  294 (415)
Q Consensus       236 ~dg~-~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~-s---~dg~i~vwd~~~~~  294 (415)
                      .++. .|++||+.+|+.+..+..  +.+.+..+.++|++..|+.. +   ..++|++||+.+++
T Consensus       355 ~~g~~~l~~~~~~~g~~~~~l~~--~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          355 HDVKNTLQLHDLATGALLKIFPL--EVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             ETTEEEEEEEETTTCCEEEEECC--CSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             ECCEEEEEEEECCCCCEEEecCC--CCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            8874 166778878887777776  56678999999999866633 2   34789999998776

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.61  E-value=2.1e-12  Score=118.25  Aligned_cols=245  Identities=9%  Similarity=-0.029  Sum_probs=161.7

Q ss_pred             CCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEE
Q 014977           41 DVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIW  119 (415)
Q Consensus        41 ~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vw  119 (415)
                      .++...+.+++|+++|++++++. ++.|.+|+.++.+......  .....+..+.+++++.++++...+. ...+.|.+|
T Consensus        41 ~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~~~~i~~~~dg~l~v~~~~~~-~~~~~i~~~  117 (333)
T 2dg1_A           41 SKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV--SHKANPAAIKIHKDGRLFVCYLGDF-KSTGGIFAA  117 (333)
T ss_dssp             ESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE--CSSSSEEEEEECTTSCEEEEECTTS-SSCCEEEEE
T ss_pred             eccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEee--CCCCCcceEEECCCCcEEEEeCCCC-CCCceEEEE
Confidence            44566789999999999888887 8899999988755332221  3445688899999987777654310 011489999


Q ss_pred             ECCCCCEEEEEE---ccCceeEEEEcCCeEEEEe---------CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCce
Q 014977          120 DDHQSRCIGEFA---FRSDVRSVKLSRDRIVVVL---------EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS  187 (415)
Q Consensus       120 d~~~~~~~~~~~---~~~~i~~l~~~~~~~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (415)
                      |..+++....+.   ....+.++.++|++.+++.         .+.|+.+|..+++...... ...  ....+.+++++.
T Consensus       118 d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~--~~~~i~~~~dg~  194 (333)
T 2dg1_A          118 TENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ-NIS--VANGIALSTDEK  194 (333)
T ss_dssp             CTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE-EES--SEEEEEECTTSS
T ss_pred             eCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeec-CCC--cccceEECCCCC
Confidence            988877654443   3457899999999987772         2456666665544433222 212  345566677776


Q ss_pred             EEEEeCCccCeEEEEEcC--CcceEEE-----ecC--ccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecC
Q 014977          188 VLACPGLQRGQVRIEHFG--LNMIKLI-----NAH--DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRG  258 (415)
Q Consensus       188 ~l~~~g~~dg~v~i~~~~--~~~~~~~-----~~~--~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~  258 (415)
                      .++++...++.|.+|+..  +.....+     ...  ...+..++++++|+++++...++. |.+||. +++.+..+...
T Consensus       195 ~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~-v~~~d~-~g~~~~~~~~~  272 (333)
T 2dg1_A          195 VLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGR-VLVFNK-RGYPIGQILIP  272 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTE-EEEECT-TSCEEEEEECT
T ss_pred             EEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCE-EEEECC-CCCEEEEEEcC
Confidence            555545567889888773  3333221     111  136788999999998888777888 999998 67777777642


Q ss_pred             CC----cccEEEEEeCCCCCEEEEEeCCC----eEEEEEceec
Q 014977          259 VD----RAEIYSIALSPNVQWLAVASDKG----TVHIFSLRVR  293 (415)
Q Consensus       259 ~~----~~~v~~l~~spdg~~l~s~s~dg----~i~vwd~~~~  293 (415)
                      ..    ...+.+++|+||++.|+.++.++    .-.||.++.+
T Consensus       273 ~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~  315 (333)
T 2dg1_A          273 GRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF  315 (333)
T ss_dssp             TGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred             CCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecc
Confidence            11    11588999999988777666553    3455555544

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.60  E-value=4.2e-14  Score=131.28  Aligned_cols=234  Identities=12%  Similarity=0.041  Sum_probs=153.6

Q ss_pred             EEEEeCCCCEEEEEe-----------CCcEEEEEccCCceeEEEeccC----CCeeEEEEeeeCCeEEEEecCCCCCCCC
Q 014977           49 SVSWNQDYGCFAAGT-----------SCGFRIYNCEPFKETFRRDLKS----GGFRIVEMLFRCNILALVGAGDNSQYPP  113 (415)
Q Consensus        49 ~l~~sp~g~~la~g~-----------d~~v~iw~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~s~~~d~~~~~  113 (415)
                      .++|+|||++|+++.           ++.|.+||..+.+......+..    +......+.+++++.+++.+...   .+
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~---~~  130 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNAS---PA  130 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEES---SS
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCC---CC
Confidence            899999999998874           4569999998876655444321    12334567899998777655421   12


Q ss_pred             CeEEEEECCCCCEEEE-EEccCceeEEEEcCCe--EEEE--eCCeEEEEEcCC-ceeeeEE------eccCCCcceEEEe
Q 014977          114 TKVIIWDDHQSRCIGE-FAFRSDVRSVKLSRDR--IVVV--LEHKIYVYSFVD-LKLLHQI------ETLANLRGLCCLS  181 (415)
Q Consensus       114 ~~i~vwd~~~~~~~~~-~~~~~~i~~l~~~~~~--~~~~--~d~~i~iwd~~~-~~~~~~~------~~~~~~~~~~~~~  181 (415)
                      +.|.+||+.+++.+.. +..... ..+.+.|++  .++.  .||.+.+|++.. ++.....      .....+. .....
T Consensus       131 ~~v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~  208 (361)
T 2oiz_A          131 TSIGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPA  208 (361)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCE
T ss_pred             CeEEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEec
Confidence            8999999999988877 554332 235566654  3333  688888888864 5544221      1111111 11122


Q ss_pred             cCCCceEEEEeCCccCeEEEEEcCCcceEEEe---cCc----------cceEEEEeCCCCCEEEEEeC-----------C
Q 014977          182 HHSSTSVLACPGLQRGQVRIEHFGLNMIKLIN---AHD----------SHIACFTLTLDGLLLATAST-----------R  237 (415)
Q Consensus       182 ~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~---~~~----------~~i~~l~~sp~g~~l~s~s~-----------d  237 (415)
                      ++  +..+++.. .++.|.+++........+.   ...          .....++|+|+++.++++..           .
T Consensus       209 ~~--g~~~~~~~-~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~  285 (361)
T 2oiz_A          209 LD--KDKAHFVS-YYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPA  285 (361)
T ss_dssp             EC--SSEEEEEB-TTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCC
T ss_pred             cc--CCEEEEEe-CCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCC
Confidence            33  33444433 5788888776543322211   100          11123789999888776643           3


Q ss_pred             CcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceec--ccC
Q 014977          238 GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR--VVG  296 (415)
Q Consensus       238 g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~--~~~  296 (415)
                      +. |.+||+.+++.+..+..  +.  +.+++|+|||++|++++. ++|.+||.+++  +..
T Consensus       286 ~~-v~viD~~t~~~v~~i~~--~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~  340 (361)
T 2oiz_A          286 AE-IWVMDTKTKQRVARIPG--RD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLL  340 (361)
T ss_dssp             SE-EEEEETTTTEEEEEEEC--TT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEE
T ss_pred             ce-EEEEECCCCcEEEEEec--CC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceee
Confidence            46 99999999999999987  33  899999999999998887 99999999998  654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.60  E-value=2.1e-12  Score=118.20  Aligned_cols=216  Identities=9%  Similarity=0.002  Sum_probs=151.6

Q ss_pred             CCcEEEEEccCCceeEEEec----cCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEE
Q 014977           64 SCGFRIYNCEPFKETFRRDL----KSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSV  139 (415)
Q Consensus        64 d~~v~iw~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l  139 (415)
                      ++.|.+||.++.+.......    ..-......+.+..+..+++.. .+     +.|.+||..+++.+.++........+
T Consensus        16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~-~~-----~~v~viD~~t~~~~~~i~~~~~p~~i   89 (328)
T 3dsm_A           16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVN-NS-----HVIFAIDINTFKEVGRITGFTSPRYI   89 (328)
T ss_dssp             CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEG-GG-----TEEEEEETTTCCEEEEEECCSSEEEE
T ss_pred             CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEc-CC-----CEEEEEECcccEEEEEcCCCCCCcEE
Confidence            67899999987553221100    0112234556666666555554 33     89999999999999999877788999


Q ss_pred             EEcCCeEEEE-e--CCeEEEEEcCCceeeeEEeccC------CCcceEEEecCCCceEEEEeCC-ccCeEEEEEcC-Ccc
Q 014977          140 KLSRDRIVVV-L--EHKIYVYSFVDLKLLHQIETLA------NLRGLCCLSHHSSTSVLACPGL-QRGQVRIEHFG-LNM  208 (415)
Q Consensus       140 ~~~~~~~~~~-~--d~~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~g~-~dg~v~i~~~~-~~~  208 (415)
                      ++++++++.+ .  ++.|.+||..+++....+....      .+. .+++  + ++.++++ .. .++.|.+++.. .+.
T Consensus        90 ~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~-~i~~--~-~~~lyv~-~~~~~~~v~viD~~t~~~  164 (328)
T 3dsm_A           90 HFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTE-QMVQ--Y-GKYVYVN-CWSYQNRILKIDTETDKV  164 (328)
T ss_dssp             EEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCC-CEEE--E-TTEEEEE-ECTTCCEEEEEETTTTEE
T ss_pred             EEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcc-eEEE--E-CCEEEEE-cCCCCCEEEEEECCCCeE
Confidence            9988886665 3  7899999999998887776544      222 2333  3 3444443 33 47889887765 444


Q ss_pred             eEEEecCccceEEEEeCCCCCEEEEEeCC----------CcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEE
Q 014977          209 IKLINAHDSHIACFTLTLDGLLLATASTR----------GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAV  278 (415)
Q Consensus       209 ~~~~~~~~~~i~~l~~sp~g~~l~s~s~d----------g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s  278 (415)
                      +..+.. ......++++|+|++++++..+          +. |.++|..+++....+... .......++|+|++++|++
T Consensus       165 ~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~-v~~id~~t~~v~~~~~~~-~g~~p~~la~~~d~~~lyv  241 (328)
T 3dsm_A          165 VDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPS-LYRIDAETFTVEKQFKFK-LGDWPSEVQLNGTRDTLYW  241 (328)
T ss_dssp             EEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCE-EEEEETTTTEEEEEEECC-TTCCCEEEEECTTSCEEEE
T ss_pred             EEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCce-EEEEECCCCeEEEEEecC-CCCCceeEEEecCCCEEEE
Confidence            555554 3345788999999977776654          67 999999999887777642 1236789999999999988


Q ss_pred             EeCCCeEEEEEceeccc
Q 014977          279 ASDKGTVHIFSLRVRVV  295 (415)
Q Consensus       279 ~s~dg~i~vwd~~~~~~  295 (415)
                      +..  .|.+||+.+++.
T Consensus       242 ~~~--~v~~~d~~t~~~  256 (328)
T 3dsm_A          242 INN--DIWRMPVEADRV  256 (328)
T ss_dssp             ESS--SEEEEETTCSSC
T ss_pred             Ecc--EEEEEECCCCce
Confidence            765  799999987763

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.58  E-value=2.5e-13  Score=138.27  Aligned_cols=192  Identities=10%  Similarity=0.075  Sum_probs=136.8

Q ss_pred             EEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE-ccC-----ceeEEEEcCCeEEEE--eC----------
Q 014977           90 IVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRS-----DVRSVKLSRDRIVVV--LE----------  151 (415)
Q Consensus        90 ~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~-----~i~~l~~~~~~~~~~--~d----------  151 (415)
                      ...+.|++++.+++++  +     +.|++||+.+++....+. +..     ...++.|+|||+.++  .+          
T Consensus        19 ~~~~~w~~dg~~~~~~--~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~   91 (740)
T 4a5s_A           19 LYSLRWISDHEYLYKQ--E-----NNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYT   91 (740)
T ss_dssp             CCCEEECSSSEEEEEE--T-----TEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEE
T ss_pred             ccccEECCCCcEEEEc--C-----CcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccc
Confidence            4467899999999886  5     999999999999877766 321     234589999999887  22          


Q ss_pred             CeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEe--cCccce----------
Q 014977          152 HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLIN--AHDSHI----------  219 (415)
Q Consensus       152 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~--~~~~~i----------  219 (415)
                      +.+++||+.+++... +..+..  ......++|+|+.||++  .++.|++|+........+.  ++...+          
T Consensus        92 ~~~~~~d~~~~~~~~-l~~~~~--~~~~~~~SPdG~~la~~--~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~  166 (740)
T 4a5s_A           92 ASYDIYDLNKRQLIT-EERIPN--NTQWVTWSPVGHKLAYV--WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYE  166 (740)
T ss_dssp             EEEEEEETTTTEECC-SSCCCT--TEEEEEECSSTTCEEEE--ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHH
T ss_pred             eEEEEEECCCCcEEE-cccCCC--cceeeEECCCCCEEEEE--ECCeEEEEECCCCceEEEcCCCCccceecCccccccc
Confidence            678899999987653 433333  45667777888888885  5789999887665444433  222222          


Q ss_pred             -------EEEEeCCCCCEEEEEeCCC------------------------------------cEEEEEECCC---Cc--E
Q 014977          220 -------ACFTLTLDGLLLATASTRG------------------------------------TLIRIFNTVD---GT--R  251 (415)
Q Consensus       220 -------~~l~~sp~g~~l~s~s~dg------------------------------------~~I~vwd~~~---~~--~  251 (415)
                             ..+.|||||++||.++.|.                                    . |++||+.+   ++  .
T Consensus       167 ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~-l~v~d~~~~~~~~~~~  245 (740)
T 4a5s_A          167 EEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVK-FFVVNTDSLSSVTNAT  245 (740)
T ss_dssp             HHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEE-EEEEETTSCCSSSCCC
T ss_pred             chhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeE-EEEEECCCCCCCCcce
Confidence                   3489999999999875321                                    4 88899988   73  2


Q ss_pred             EEEEecC----CCcccEEEEEeCCCCCEEEEEeC----CCeEEEEEceecc
Q 014977          252 LQEVRRG----VDRAEIYSIALSPNVQWLAVASD----KGTVHIFSLRVRV  294 (415)
Q Consensus       252 ~~~~~~~----~~~~~v~~l~~spdg~~l~s~s~----dg~i~vwd~~~~~  294 (415)
                      ...+...    .+...+..++|+|||++++....    +..|++||+.+++
T Consensus       246 ~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~  296 (740)
T 4a5s_A          246 SIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS  296 (740)
T ss_dssp             EEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred             EEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence            2334321    15567999999999997765543    3379999999887

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.58  E-value=5.4e-13  Score=124.87  Aligned_cols=229  Identities=11%  Similarity=-0.023  Sum_probs=145.2

Q ss_pred             EEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEE-------------------EeeeCCeEEEEec---
Q 014977           49 SVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVE-------------------MLFRCNILALVGA---  105 (415)
Q Consensus        49 ~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~l~s~---  105 (415)
                      .+.|+|||++|+... ++.|.+|++++.+.......+..  ....                   ..++|++..++..   
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~--~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~  162 (396)
T 3c5m_A           85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEE--WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFY  162 (396)
T ss_dssp             TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTT--EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHH
T ss_pred             cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccc--cCCCCCEEEeccCCccccccccccccCCCCcceeeeeec
Confidence            478999999999888 77899999987654333222111  1111                   1233333322221   


Q ss_pred             --CCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcC-CeEEEE--eC-------CeEEEEEcCCceeeeEEeccCC
Q 014977          106 --GDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSR-DRIVVV--LE-------HKIYVYSFVDLKLLHQIETLAN  173 (415)
Q Consensus       106 --~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~-~~~~~~--~d-------~~i~iwd~~~~~~~~~~~~~~~  173 (415)
                        ..     +..|.+||+.+++......+...+..+.|+| ++..++  .+       ..|++||+..++.. .+..+..
T Consensus       163 ~~~~-----~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~  236 (396)
T 3c5m_A          163 HTNP-----TCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAE  236 (396)
T ss_dssp             HTCC-----CEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCT
T ss_pred             cCCC-----cceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCC
Confidence              22     2789999999988776666778899999999 777555  21       47899998665433 2222221


Q ss_pred             CcceEEEecCCCceEEEEeCCcc----CeEEEEEcCCcceEEEecCccceEEEEeCC-CCCEEEEEe-------------
Q 014977          174 LRGLCCLSHHSSTSVLACPGLQR----GQVRIEHFGLNMIKLINAHDSHIACFTLTL-DGLLLATAS-------------  235 (415)
Q Consensus       174 ~~~~~~~~~~~~~~~l~~~g~~d----g~v~i~~~~~~~~~~~~~~~~~i~~l~~sp-~g~~l~s~s-------------  235 (415)
                      ...+..+.++|++..|++.+..+    +.|++|+........+..... .. +.|+| +|++|++++             
T Consensus       237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~  314 (396)
T 3c5m_A          237 GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSY  314 (396)
T ss_dssp             TEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEECCC----------
T ss_pred             CccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEecCCcceeecccccc
Confidence            22355566777777666643221    448888876655544443322 23 88999 999888754             


Q ss_pred             ---CCCcEEEEEECCCCcEEEEEecCCCcc-----------cEEEEEeCCCCCEEEEEeC-CCeEEEEEce
Q 014977          236 ---TRGTLIRIFNTVDGTRLQEVRRGVDRA-----------EIYSIALSPNVQWLAVASD-KGTVHIFSLR  291 (415)
Q Consensus       236 ---~dg~~I~vwd~~~~~~~~~~~~~~~~~-----------~v~~l~~spdg~~l~s~s~-dg~i~vwd~~  291 (415)
                         .+.. |++||+.+++.. .+..  +..           .+..++|+|||+.|+.++. ++...||.++
T Consensus       315 ~~~~~~~-i~~~d~~~~~~~-~l~~--~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~  381 (396)
T 3c5m_A          315 NIENDPF-LYVLNTKAKSAQ-KLCK--HSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD  381 (396)
T ss_dssp             CCCCCCE-EEEEETTTTBCC-EEEE--CCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             ccCCCCc-EEEEecccCceE-EccC--CCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence               2356 999999887653 3443  222           2566789999999887765 4555555554

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.58  E-value=4e-13  Score=123.64  Aligned_cols=223  Identities=15%  Similarity=0.146  Sum_probs=145.9

Q ss_pred             CceEEEEEeCCCCEEEEEe-C---Cc--EEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCC-C-------
Q 014977           45 IELISVSWNQDYGCFAAGT-S---CG--FRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNS-Q-------  110 (415)
Q Consensus        45 ~~V~~l~~sp~g~~la~g~-d---~~--v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~-~-------  110 (415)
                      ..+..++|+|||++|+... +   +.  |.+|++++.+.....   .... +..+.|+|++..|+....+. .       
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~---~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~  134 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKIL---EAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFE  134 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEE---EESE-EEEEEECTTSSEEEEEEECCCC-------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEE---cCCC-ccceeECCCCCEEEEEEccCCCcCCcEEE
Confidence            4578899999999999877 3   34  666677664433222   2233 78899999986665543210 0       


Q ss_pred             --------------CCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE-e--C------C---eEEEEEcCCcee
Q 014977          111 --------------YPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV-L--E------H---KIYVYSFVDLKL  164 (415)
Q Consensus       111 --------------~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~--d------~---~i~iwd~~~~~~  164 (415)
                                    .....|.+||+.+++.+..+... .+..+.|+|++ +++ .  +      .   .|+++|  +++.
T Consensus       135 ~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~  210 (347)
T 2gop_A          135 DDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKE  210 (347)
T ss_dssp             --CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEE
T ss_pred             cccceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCce
Confidence                          00257999999888774555444 88899999999 555 2  1      2   355555  5543


Q ss_pred             eeEEeccCCCcceEEEecCCCceEEEEeCCc-------cCeEEEEEcCCcceEEEecCccceEE-EEeCCCCCEEEEEeC
Q 014977          165 LHQIETLANLRGLCCLSHHSSTSVLACPGLQ-------RGQVRIEHFGLNMIKLINAHDSHIAC-FTLTLDGLLLATAST  236 (415)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-------dg~v~i~~~~~~~~~~~~~~~~~i~~-l~~sp~g~~l~s~s~  236 (415)
                      . .+..+ .  ....+  +|++..|++.+..       ...|.+++ .++.......+...+.. +.|+ +| ++++++.
T Consensus       211 ~-~l~~~-~--~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~  281 (347)
T 2gop_A          211 E-KMFEK-V--SFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD-GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFE  281 (347)
T ss_dssp             E-EEEEE-E--SEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC-SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEE
T ss_pred             E-EeccC-c--ceeeE--CCCCCEEEEEEccccCCccccceEEEEC-CCceEeccccCCcccCCccEEc-Cc-EEEEEec
Confidence            3 33333 2  33444  5566667665433       24677776 44443334455677886 9999 88 8999999


Q ss_pred             CCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeE-EEEEce
Q 014977          237 RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTV-HIFSLR  291 (415)
Q Consensus       237 dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i-~vwd~~  291 (415)
                      ++. ++|| +.+++.. .+..  +...|.+++|+|  .++++++.++.. .||.++
T Consensus       282 ~~~-~~l~-~~~g~~~-~~~~--~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          282 EGS-VNLY-IWDGEIK-PIAK--GRHWIMGFDVDE--IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             TTE-EEEE-EESSSEE-EEEC--SSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred             CCc-EEEE-EcCCceE-EEec--CCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence            998 9999 8766654 3433  456799999999  677777777654 778776

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.57  E-value=3.9e-13  Score=119.09  Aligned_cols=236  Identities=8%  Similarity=-0.071  Sum_probs=157.7

Q ss_pred             ceEEEEEeCCCCEEE-EEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCC
Q 014977           46 ELISVSWNQDYGCFA-AGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ  123 (415)
Q Consensus        46 ~V~~l~~sp~g~~la-~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~  123 (415)
                      ...+++++++|++++ +.. ++.|.+|+..+..... .. ..+...+..+.+++++.++++.. +     +.|.+||...
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~-~~-~~~~~~p~~i~~~~~g~l~v~~~-~-----~~i~~~d~~~   96 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV-LP-FNGLYQPQGLAVDGAGTVYVTDF-N-----NRVVTLAAGS   96 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE-CC-CCSCCSCCCEEECTTCCEEEEET-T-----TEEEEECTTC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccce-Ee-eCCcCCcceeEECCCCCEEEEcC-C-----CEEEEEeCCC
Confidence            688999999999777 434 7889999876533211 11 12234456788888877777655 5     8999999765


Q ss_pred             CCEEEEEE--ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCe
Q 014977          124 SRCIGEFA--FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQ  198 (415)
Q Consensus       124 ~~~~~~~~--~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~  198 (415)
                      ... ..+.  ....+.++++++++.+++   .++.|.+|+..+............  ....+..++++.++++ ...++.
T Consensus        97 ~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~--~p~~i~~~~~g~l~v~-~~~~~~  172 (270)
T 1rwi_B           97 NNQ-TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLN--DPDGVAVDNSGNVYVT-DTDNNR  172 (270)
T ss_dssp             SCC-EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCC--SCCCEEECTTCCEEEE-EGGGTE
T ss_pred             ceE-eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCC--CceeEEEeCCCCEEEE-ECCCCE
Confidence            543 2332  235788999999988766   367899998655433222111112  2344555556665544 445678


Q ss_pred             EEEEEcCCcceEEEe-cCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEE
Q 014977          199 VRIEHFGLNMIKLIN-AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLA  277 (415)
Q Consensus       199 v~i~~~~~~~~~~~~-~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~  277 (415)
                      |.+++..+....... .+...+..++++++|.++++...++. |.+||....... .+... +...+.+++++++|++++
T Consensus       173 i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~-v~~~~~~~~~~~-~~~~~-~~~~p~~i~~~~~g~l~v  249 (270)
T 1rwi_B          173 VVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQ-VVKLLAGSTTST-VLPFT-GLNTPLAVAVDSDRTVYV  249 (270)
T ss_dssp             EEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSC-EEEECTTCSCCE-ECCCC-SCSCEEEEEECTTCCEEE
T ss_pred             EEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCc-EEEEcCCCCcce-eeccC-CCCCceeEEECCCCCEEE
Confidence            888887765544332 23366889999999987777777888 999998655433 22211 234689999999999888


Q ss_pred             EEeCCCeEEEEEceecccC
Q 014977          278 VASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       278 s~s~dg~i~vwd~~~~~~~  296 (415)
                      +...++.|++|++...+..
T Consensus       250 ~~~~~~~v~~~~~~~~~~~  268 (270)
T 1rwi_B          250 ADRGNDRVVKLTSLEHHHH  268 (270)
T ss_dssp             EEGGGTEEEEECCCGGGSC
T ss_pred             EECCCCEEEEEcCCCcccc
Confidence            8888999999999887643

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.57  E-value=2.4e-12  Score=114.57  Aligned_cols=213  Identities=10%  Similarity=0.009  Sum_probs=158.7

Q ss_pred             CCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEc-
Q 014977           55 DYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAF-  132 (415)
Q Consensus        55 ~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~-  132 (415)
                      .+++|++++ ++.|.+||.++++.+.+...+ ....+.++.+.+++.++++.  +     +.|..||. +++.+.++.. 
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~-~~~~~~~~~~~pdG~ilvs~--~-----~~V~~~d~-~G~~~W~~~~~   74 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLE-KGWECNSVAATKAGEILFSY--S-----KGAKMITR-DGRELWNIAAP   74 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECC-TTCCCCEEEECTTSCEEEEC--B-----SEEEEECT-TSCEEEEEECC
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCC-ccCCCcCeEECCCCCEEEeC--C-----CCEEEECC-CCCEEEEEcCC
Confidence            457888888 999999999888877765542 11356677788999888853  3     78999998 8999999984 


Q ss_pred             -cCceeEEEEcCCeEEEE-e---CCeEEEEEcCCceeeeEEeccCC---C-cceEEEecCCCceEEEEeCCccCeEEEEE
Q 014977          133 -RSDVRSVKLSRDRIVVV-L---EHKIYVYSFVDLKLLHQIETLAN---L-RGLCCLSHHSSTSVLACPGLQRGQVRIEH  203 (415)
Q Consensus       133 -~~~i~~l~~~~~~~~~~-~---d~~i~iwd~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~l~~~g~~dg~v~i~~  203 (415)
                       ...+.++.+.++|.+++ .   ++.|..+|. +++.+..+.....   . .....+.+.+++.++++ ...++.|..++
T Consensus        75 ~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~-~~~~~~v~~~d  152 (276)
T 3no2_A           75 AGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVP-LFATSEVREIA  152 (276)
T ss_dssp             TTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEE-ETTTTEEEEEC
T ss_pred             CCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEE-ecCCCEEEEEC
Confidence             35788999999999888 2   456777774 7787777653211   0 11222344566777765 56789999999


Q ss_pred             cCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCC----cccEEEEEeCCCCCEEEEE
Q 014977          204 FGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVD----RAEIYSIALSPNVQWLAVA  279 (415)
Q Consensus       204 ~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~----~~~v~~l~~spdg~~l~s~  279 (415)
                      ..++.+..+... ..+.++.+.++|++++++..++. |..+|..+|+.+.++.....    -..+..+...++|.++++.
T Consensus       153 ~~G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~-v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~  230 (276)
T 3no2_A          153 PNGQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHC-FVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN  230 (276)
T ss_dssp             TTSCEEEEEECS-SCCCEEEECTTSCEEEECBTTSE-EEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred             CCCCEEEEEECC-CCccceeEcCCCCEEEEeCCCCe-EEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence            888888887765 45567788899999998888888 99999999999999874211    1237888899999988877


Q ss_pred             e
Q 014977          280 S  280 (415)
Q Consensus       280 s  280 (415)
                      .
T Consensus       231 ~  231 (276)
T 3no2_A          231 W  231 (276)
T ss_dssp             E
T ss_pred             c
Confidence            4

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.55  E-value=5.6e-12  Score=115.28  Aligned_cols=233  Identities=12%  Similarity=-0.012  Sum_probs=160.7

Q ss_pred             CceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCC
Q 014977           45 IELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ  123 (415)
Q Consensus        45 ~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~  123 (415)
                      .....+.+. +++++++.. ++.|.+||..+.+.+....   .......+.+++++.++++...+     +.|.+||..+
T Consensus        44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~---~~~~p~~i~~~~~g~lyv~~~~~-----~~v~~iD~~t  114 (328)
T 3dsm_A           44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT---GFTSPRYIHFLSDEKAYVTQIWD-----YRIFIINPKT  114 (328)
T ss_dssp             SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE---CCSSEEEEEEEETTEEEEEEBSC-----SEEEEEETTT
T ss_pred             ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC---CCCCCcEEEEeCCCeEEEEECCC-----CeEEEEECCC
Confidence            446777774 344555555 8999999999876654432   33456677887777777776455     9999999999


Q ss_pred             CCEEEEEEccC------ceeEEEEcCCeEEEE-e--CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCC
Q 014977          124 SRCIGEFAFRS------DVRSVKLSRDRIVVV-L--EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL  194 (415)
Q Consensus       124 ~~~~~~~~~~~------~i~~l~~~~~~~~~~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  194 (415)
                      ++....+....      ....+++..+..+++ .  ++.|.++|+.+++.+..+.....+   ..+..+++++++++ +.
T Consensus       115 ~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p---~~i~~~~dG~l~v~-~~  190 (328)
T 3dsm_A          115 YEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQP---TSLVMDKYNKMWTI-TD  190 (328)
T ss_dssp             TEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCB---CCCEECTTSEEEEE-BC
T ss_pred             CeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCc---cceEEcCCCCEEEE-EC
Confidence            99888887544      667788844444444 2  789999999999988887654432   33445667776655 33


Q ss_pred             cc----------CeEEEEEcCC-cceEEEecC-ccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEE-EecCCCc
Q 014977          195 QR----------GQVRIEHFGL-NMIKLINAH-DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQE-VRRGVDR  261 (415)
Q Consensus       195 ~d----------g~v~i~~~~~-~~~~~~~~~-~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~-~~~~~~~  261 (415)
                      .+          +.|.+++... +....+... ......++|+|++++|+++..  . |.+||..+++.... +... ..
T Consensus       191 ~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~-v~~~d~~t~~~~~~~~~~~-~~  266 (328)
T 3dsm_A          191 GGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--D-IWRMPVEADRVPVRPFLEF-RD  266 (328)
T ss_dssp             CBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--S-EEEEETTCSSCCSSCSBCC-CS
T ss_pred             CCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--E-EEEEECCCCceeeeeeecC-CC
Confidence            33          6788877654 444455432 246789999999999888765  7 99999988875321 1110 13


Q ss_pred             ccEEEEEeCC-CCCEEEEE----eCCCeEEEEEceeccc
Q 014977          262 AEIYSIALSP-NVQWLAVA----SDKGTVHIFSLRVRVV  295 (415)
Q Consensus       262 ~~v~~l~~sp-dg~~l~s~----s~dg~i~vwd~~~~~~  295 (415)
                      .....++++| +++++++.    ..++.|.+||.+ ++.
T Consensus       267 ~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~  304 (328)
T 3dsm_A          267 TKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKL  304 (328)
T ss_dssp             SCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCE
T ss_pred             CceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCE
Confidence            4688999999 45555555    568899999988 654

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.55  E-value=2.6e-12  Score=130.17  Aligned_cols=239  Identities=7%  Similarity=-0.068  Sum_probs=151.4

Q ss_pred             CCCCEEEEEe--CCc--EEEEEcc--CCceeEEEe---c-cCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCC
Q 014977           54 QDYGCFAAGT--SCG--FRIYNCE--PFKETFRRD---L-KSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ  123 (415)
Q Consensus        54 p~g~~la~g~--d~~--v~iw~~~--~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~  123 (415)
                      |+|++++...  .+.  -.||..+  ..+......   + ..+...+..+.|+|++..++.+..+.......|++||+.+
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t  160 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG  160 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence            8899888655  222  2556554  222221111   1 1234567789999999877754432000113899999999


Q ss_pred             CCEEEEEEccCceeEEEEcCCeEEEE---eCCe----------------EEEEEcCCceee--eEEeccCCCcceEEEec
Q 014977          124 SRCIGEFAFRSDVRSVKLSRDRIVVV---LEHK----------------IYVYSFVDLKLL--HQIETLANLRGLCCLSH  182 (415)
Q Consensus       124 ~~~~~~~~~~~~i~~l~~~~~~~~~~---~d~~----------------i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~  182 (415)
                      ++.+........+..++|+||++.++   .++.                |++|++.+++..  ..+.....+.....+.+
T Consensus       161 g~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~  240 (710)
T 2xdw_A          161 AKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL  240 (710)
T ss_dssp             TEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE
T ss_pred             CCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEE
Confidence            98776443333477899999998777   3333                999999876532  22333323334566777


Q ss_pred             CCCceEEEEeCCc----cCeEEEEEcCC------c--ceEEEecCccceEEEEeCCCCCEEEEEeCC----CcEEEEEEC
Q 014977          183 HSSTSVLACPGLQ----RGQVRIEHFGL------N--MIKLINAHDSHIACFTLTLDGLLLATASTR----GTLIRIFNT  246 (415)
Q Consensus       183 ~~~~~~l~~~g~~----dg~v~i~~~~~------~--~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d----g~~I~vwd~  246 (415)
                      ++++++|++....    +..|++++...      .  ....+..+...+.. .|+|+|..|+..+..    +. |.+||+
T Consensus       241 SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~-l~~~d~  318 (710)
T 2xdw_A          241 SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYR-LINIDF  318 (710)
T ss_dssp             CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCE-EEEEET
T ss_pred             cCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCE-EEEEeC
Confidence            8888888765421    56788887764      2  46677777666655 488999877766542    35 999999


Q ss_pred             CCCc--EEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCe--EEEEEceecc
Q 014977          247 VDGT--RLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGT--VHIFSLRVRV  294 (415)
Q Consensus       247 ~~~~--~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~--i~vwd~~~~~  294 (415)
                      .+++  ....+..+.....+..++|++++.++++...|+.  |++|++.+++
T Consensus       319 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~  370 (710)
T 2xdw_A          319 TDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGA  370 (710)
T ss_dssp             TSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCC
T ss_pred             CCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCC
Confidence            8774  2334444212236888999988888888888885  4555554444

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.54  E-value=1.9e-11  Score=119.48  Aligned_cols=230  Identities=11%  Similarity=0.057  Sum_probs=157.6

Q ss_pred             CCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECC--CCCEEEEE
Q 014977           54 QDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH--QSRCIGEF  130 (415)
Q Consensus        54 p~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~--~~~~~~~~  130 (415)
                      +.+.++++.. ++.|.++|.++.+.+.....   ......+.+++++.++..++.+     +.|.+||+.  +++.+.++
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~---g~~p~~v~~SpDGr~lyv~~~d-----g~V~viD~~~~t~~~v~~i  236 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT---GYAVHISRLSASGRYLFVIGRD-----GKVNMIDLWMKEPTTVAEI  236 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEEC---SSCEEEEEECTTSCEEEEEETT-----SEEEEEETTSSSCCEEEEE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeC---CCCccceEECCCCCEEEEEcCC-----CeEEEEECCCCCCcEeEEE
Confidence            4444555555 89999999998766554432   2244578899999877777766     999999995  88888888


Q ss_pred             EccCceeEEEEc----CCeEEEE----eCCeEEEEEcCCceeeeEEeccCC---------CcceEEEecCCCceEEEEeC
Q 014977          131 AFRSDVRSVKLS----RDRIVVV----LEHKIYVYSFVDLKLLHQIETLAN---------LRGLCCLSHHSSTSVLACPG  193 (415)
Q Consensus       131 ~~~~~i~~l~~~----~~~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~g  193 (415)
                      ........++|+    |||++++    .++.|.++|..+.+.+..+.....         ...+..+..++++..+++.-
T Consensus       237 ~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~  316 (567)
T 1qks_A          237 KIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV  316 (567)
T ss_dssp             ECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred             ecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEe
Confidence            866678899999    6987766    689999999999999887754211         11233444444444444445


Q ss_pred             CccCeEEEEEcCCcc---eEEEecCccceEEEEeCCCCCEEEEEeC-CCcEEEEEECCCCcEEEEEec-CC--CcccEEE
Q 014977          194 LQRGQVRIEHFGLNM---IKLINAHDSHIACFTLTLDGLLLATAST-RGTLIRIFNTVDGTRLQEVRR-GV--DRAEIYS  266 (415)
Q Consensus       194 ~~dg~v~i~~~~~~~---~~~~~~~~~~i~~l~~sp~g~~l~s~s~-dg~~I~vwd~~~~~~~~~~~~-~~--~~~~v~~  266 (415)
                      ...|.|.+.+.....   +..+ ........+.|+|+|++|+++.. ++. |.++|+.+++.+..+.. +.  |.+.-..
T Consensus       317 ~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~-V~ViD~~t~kl~~~i~vgg~~Phpg~g~~  394 (567)
T 1qks_A          317 KETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNK-LVVIDTKEGKLVAIEDTGGQTPHPGRGAN  394 (567)
T ss_dssp             TTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTE-EEEEETTTTEEEEEEECSSSSBCCTTCEE
T ss_pred             cCCCeEEEEecCCCccceeeee-eccccccCceECCCCCEEEEEeCCCCe-EEEEECCCCcEEEEEeccCcCCCCcccee
Confidence            677888886654321   2222 23445678899999998877664 566 99999999998877765 32  3221222


Q ss_pred             EEeCCCCCEEE-EEe-CCCeEEEEEceecc
Q 014977          267 IALSPNVQWLA-VAS-DKGTVHIFSLRVRV  294 (415)
Q Consensus       267 l~~spdg~~l~-s~s-~dg~i~vwd~~~~~  294 (415)
                      + ++|++..+. +.. .+++|.++|..+.+
T Consensus       395 ~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~  423 (567)
T 1qks_A          395 F-VHPTFGPVWATSHMGDDSVALIGTDPEG  423 (567)
T ss_dssp             E-EETTTEEEEEEEBSSSSEEEEEECCTTT
T ss_pred             e-ECCCCCcEEEeCCCCCCeEEEecCCCCC
Confidence            2 578755444 443 46899999998743

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.54  E-value=3.9e-13  Score=135.00  Aligned_cols=236  Identities=11%  Similarity=-0.005  Sum_probs=146.7

Q ss_pred             EEEEe--CCCCE-EEEEeC--CcEEEEEcc--CCceeEEEeccC-----CCeeEEEEeeeCCeEEEEecCCCCC-----C
Q 014977           49 SVSWN--QDYGC-FAAGTS--CGFRIYNCE--PFKETFRRDLKS-----GGFRIVEMLFRCNILALVGAGDNSQ-----Y  111 (415)
Q Consensus        49 ~l~~s--p~g~~-la~g~d--~~v~iw~~~--~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~s~~~d~~-----~  111 (415)
                      ...|+  |||+. |+.+.+  ..|.+++++  ..+....  +..     +...+..+.|+|++..|+..+.+..     .
T Consensus        81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~--l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~  158 (662)
T 3azo_A           81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRP--LTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSD  158 (662)
T ss_dssp             CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEE--CSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTC
T ss_pred             cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEe--ccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCC
Confidence            56565  99998 887774  445555544  1022222  223     5677889999999977776554200     0


Q ss_pred             CCCeEEEEECCC------CCEEEEE-EccCceeEEEEcCCeEEEE---eC--------CeEEEEEcC-Cc---eeeeEEe
Q 014977          112 PPTKVIIWDDHQ------SRCIGEF-AFRSDVRSVKLSRDRIVVV---LE--------HKIYVYSFV-DL---KLLHQIE  169 (415)
Q Consensus       112 ~~~~i~vwd~~~------~~~~~~~-~~~~~i~~l~~~~~~~~~~---~d--------~~i~iwd~~-~~---~~~~~~~  169 (415)
                      ....|.+||+.+      ++..... .+...+..+.|+|||+.++   .+        ..|++||+. ++   +......
T Consensus       159 ~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~  238 (662)
T 3azo_A          159 VRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG  238 (662)
T ss_dssp             EEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE
T ss_pred             ceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC
Confidence            114899999988      6654444 4456788899999998887   23        379999998 56   3333333


Q ss_pred             ccCCCcceEEEecCCCceEEEEeCCccCeEEE--EEcCCcceEEEecCccc---------eEEEEeCCCCCEEEEEeCCC
Q 014977          170 TLANLRGLCCLSHHSSTSVLACPGLQRGQVRI--EHFGLNMIKLINAHDSH---------IACFTLTLDGLLLATASTRG  238 (415)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i--~~~~~~~~~~~~~~~~~---------i~~l~~sp~g~~l~s~s~dg  238 (415)
                      .+..  ....+.++|+++++ +++..++...|  ++........+..+...         +..++|+|+++++++++. +
T Consensus       239 ~~~~--~~~~~~~spdg~l~-~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~  314 (662)
T 3azo_A          239 GPEE--AIAQAEWAPDGSLI-VATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-G  314 (662)
T ss_dssp             ETTB--CEEEEEECTTSCEE-EEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-S
T ss_pred             CCCc--eEcceEECCCCeEE-EEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-C
Confidence            3333  45566677777754 44667784445  55434444443333222         467899999999999998 8


Q ss_pred             cEEEEE--ECCCCcEEEEEecCCCcccEEEE-EeCCCCCEEEEEeCCCe--EEEEEceecc
Q 014977          239 TLIRIF--NTVDGTRLQEVRRGVDRAEIYSI-ALSPNVQWLAVASDKGT--VHIFSLRVRV  294 (415)
Q Consensus       239 ~~I~vw--d~~~~~~~~~~~~~~~~~~v~~l-~~spdg~~l~s~s~dg~--i~vwd~~~~~  294 (415)
                      . ++||  |+.+++ +..+..  +...+..+ +++++.-++++++.+..  |++||+.+++
T Consensus       315 ~-~~l~~~d~~~~~-~~~l~~--~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~  371 (662)
T 3azo_A          315 A-AVLGILDPESGE-LVDAAG--PWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGR  371 (662)
T ss_dssp             S-CEEEEEETTTTE-EEECCS--SCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             c-cEEEEEECCCCc-EEEecC--CCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            8 8888  655554 566665  55567766 55444334445566654  4444554554

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.54  E-value=5.8e-12  Score=113.31  Aligned_cols=194  Identities=8%  Similarity=0.002  Sum_probs=133.4

Q ss_pred             CCCeeEEEEeeeCCeE-EEEecCCCCCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE-e--CCeEEEEEc
Q 014977           85 SGGFRIVEMLFRCNIL-ALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-L--EHKIYVYSF  159 (415)
Q Consensus        85 ~~~~~~~~~~~~~~~~-~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~-~--d~~i~iwd~  159 (415)
                      .+......+.|++++. +++++..+     +.|..|+..++  ...+. +...+.++++++++.+++ .  ++.|.+||.
T Consensus        25 ~~~~~~eg~~~d~~g~~l~~~~~~~-----~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~   97 (296)
T 3e5z_A           25 DGFTWTEGPVYVPARSAVIFSDVRQ-----NRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQRE   97 (296)
T ss_dssp             CCCSSEEEEEEEGGGTEEEEEEGGG-----TEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECS
T ss_pred             cCCccccCCeEeCCCCEEEEEeCCC-----CEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcC
Confidence            3444566788999885 56665555     89999998877  55555 567789999999998877 3  578999999


Q ss_pred             CCceeeeEEeccCC--CcceEEEecCCCceEEEEe---CC-------------ccCeEEEEEcCCcceEEEecCccceEE
Q 014977          160 VDLKLLHQIETLAN--LRGLCCLSHHSSTSVLACP---GL-------------QRGQVRIEHFGLNMIKLINAHDSHIAC  221 (415)
Q Consensus       160 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~---g~-------------~dg~v~i~~~~~~~~~~~~~~~~~i~~  221 (415)
                      .+++..........  ...+..+..++++.++++.   |.             ..+.|..++.. ..+..+..+......
T Consensus        98 ~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~g  176 (296)
T 3e5z_A           98 PGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNG  176 (296)
T ss_dssp             TTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEE
T ss_pred             CCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCcc
Confidence            77775443322111  1123345666777776642   11             12345545544 445555666677889


Q ss_pred             EEeCCCCCEEEEEeCCCcEEEEEECC-CCcE---EEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEce
Q 014977          222 FTLTLDGLLLATASTRGTLIRIFNTV-DGTR---LQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR  291 (415)
Q Consensus       222 l~~sp~g~~l~s~s~dg~~I~vwd~~-~~~~---~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~  291 (415)
                      ++|+|+|++|++.+.++. |++||+. +++.   ...+ .. +...+.+++++++|+++++.  ++.|.+|+.+
T Consensus       177 i~~s~dg~~lv~~~~~~~-i~~~~~~~~g~~~~~~~~~-~~-~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~  245 (296)
T 3e5z_A          177 LAFLPSGNLLVSDTGDNA-THRYCLNARGETEYQGVHF-TV-EPGKTDGLRVDAGGLIWASA--GDGVHVLTPD  245 (296)
T ss_dssp             EEECTTSCEEEEETTTTE-EEEEEECSSSCEEEEEEEE-CC-SSSCCCSEEEBTTSCEEEEE--TTEEEEECTT
T ss_pred             EEECCCCCEEEEeCCCCe-EEEEEECCCCcCcCCCeEe-eC-CCCCCCeEEECCCCCEEEEc--CCeEEEECCC
Confidence            999999998877777788 9999987 5554   3344 21 44567789999999876655  7889999975

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.53  E-value=9.3e-12  Score=112.69  Aligned_cols=235  Identities=9%  Similarity=0.010  Sum_probs=157.5

Q ss_pred             CCceEEEEEeCCCCEEEE-------Ee-CCcEEEEEccCCceeEEEec---cCCCeeEEEEeeeCC-eEEEEecCCCCCC
Q 014977           44 EIELISVSWNQDYGCFAA-------GT-SCGFRIYNCEPFKETFRRDL---KSGGFRIVEMLFRCN-ILALVGAGDNSQY  111 (415)
Q Consensus        44 ~~~V~~l~~sp~g~~la~-------g~-d~~v~iw~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~l~s~~~d~~~  111 (415)
                      -....+++|+++|.++++       +. ++.|.+|+..+.+.... ..   ......+..+.++++ +.++++...    
T Consensus        17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~-~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~----   91 (314)
T 1pjx_A           17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVI-CKPEVNGYGGIPAGCQCDRDANQLFVADMR----   91 (314)
T ss_dssp             CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEE-ECCEETTEECCEEEEEECSSSSEEEEEETT----
T ss_pred             CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEE-EecccCCCCCCCceEEEecCCCcEEEEECC----
Confidence            345689999999988887       45 88999999876543221 11   012345778889998 876666543    


Q ss_pred             CCCeEEEEECCCCCEEEE-EEc-----cCceeEEEEcCCeEEEE-e--C---------------CeEEEEEcCCceeeeE
Q 014977          112 PPTKVIIWDDHQSRCIGE-FAF-----RSDVRSVKLSRDRIVVV-L--E---------------HKIYVYSFVDLKLLHQ  167 (415)
Q Consensus       112 ~~~~i~vwd~~~~~~~~~-~~~-----~~~i~~l~~~~~~~~~~-~--d---------------~~i~iwd~~~~~~~~~  167 (415)
                        +.|.+||.. ++.... ...     ...+.++++++++.+.+ .  +               +.|..||.. ++....
T Consensus        92 --~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~  167 (314)
T 1pjx_A           92 --LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV  167 (314)
T ss_dssp             --TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE
T ss_pred             --CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe
Confidence              579999987 765433 221     23588999999998777 2  2               467777765 544332


Q ss_pred             EeccCCCcceEEEecC----CCceEEEEeCCccCeEEEEEcC--Cc-----ceEEEecCc-cceEEEEeCCCCCEEEEEe
Q 014977          168 IETLANLRGLCCLSHH----SSTSVLACPGLQRGQVRIEHFG--LN-----MIKLINAHD-SHIACFTLTLDGLLLATAS  235 (415)
Q Consensus       168 ~~~~~~~~~~~~~~~~----~~~~~l~~~g~~dg~v~i~~~~--~~-----~~~~~~~~~-~~i~~l~~sp~g~~l~s~s  235 (415)
                      ... ..  ....+.++    +++..+.++...++.|.+|+..  +.     ....+..+. ..+..++++++|+++++..
T Consensus       168 ~~~-~~--~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~  244 (314)
T 1pjx_A          168 DTA-FQ--FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW  244 (314)
T ss_dssp             EEE-ES--SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE
T ss_pred             ccC-CC--CcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEc
Confidence            222 11  22344445    7776555555567888887654  22     112222333 5678899999999888877


Q ss_pred             CCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEE-eCCCeEEEEEceec
Q 014977          236 TRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVA-SDKGTVHIFSLRVR  293 (415)
Q Consensus       236 ~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~-s~dg~i~vwd~~~~  293 (415)
                      .++. |.+||..+++.+..+..  +...+.+++|+++|+.|+++ ..++.|..|++...
T Consensus       245 ~~~~-i~~~d~~~g~~~~~~~~--~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          245 GSSH-IEVFGPDGGQPKMRIRC--PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             TTTE-EEEECTTCBSCSEEEEC--SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             CCCE-EEEEcCCCCcEeEEEeC--CCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence            7888 99999887877666665  44578999999999955544 45678999998754

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.52  E-value=2.5e-10  Score=102.32  Aligned_cols=232  Identities=7%  Similarity=-0.048  Sum_probs=160.9

Q ss_pred             CCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEEC
Q 014977           43 DEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD  121 (415)
Q Consensus        43 h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~  121 (415)
                      ....+.++++.++|+++++.. ++.|.+|+.+ .+ .....+......+..+.+++++.++++...+     +.|..+|.
T Consensus        18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-----~~v~~~d~   90 (300)
T 2qc5_A           18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GR-IKEFEVPTPDAKVMCLIVSSLGDIWFTENGA-----NKIGKLSK   90 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-EEEEECSSTTCCEEEEEECTTSCEEEEETTT-----TEEEEECT
T ss_pred             CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cc-eEEEECCCCCCcceeEEECCCCCEEEEecCC-----CeEEEECC
Confidence            456789999999999888776 8899999987 33 2233333344667888888888777776554     88999997


Q ss_pred             CCCCEEEEEE---ccCceeEEEEcCCeEEEE-e--CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCc
Q 014977          122 HQSRCIGEFA---FRSDVRSVKLSRDRIVVV-L--EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ  195 (415)
Q Consensus       122 ~~~~~~~~~~---~~~~i~~l~~~~~~~~~~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  195 (415)
                      . ++.. .+.   ....+.++++.+++.+.+ .  ++.|..||.. ++.. .+...........+..++++.+.++ ...
T Consensus        91 ~-g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~~~~~~~~i~~d~~g~l~v~-~~~  165 (300)
T 2qc5_A           91 K-GGFT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY-EYDLPNKGSYPAFITLGSDNALWFT-ENQ  165 (300)
T ss_dssp             T-SCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECTTSSEEEE-ETT
T ss_pred             C-CCeE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE-EccCCCCCCCceeEEECCCCCEEEE-ecC
Confidence            7 6553 333   246789999999887766 2  6789999976 5544 2322212235566777777775544 444


Q ss_pred             cCeEEEEEcCCcceEEEe--cCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCC
Q 014977          196 RGQVRIEHFGLNMIKLIN--AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNV  273 (415)
Q Consensus       196 dg~v~i~~~~~~~~~~~~--~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg  273 (415)
                      ++.|..++..++... +.  .+...+..++++++|++.++....+. |.+||. +++... +........+.+++++++|
T Consensus       166 ~~~i~~~~~~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~-i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g  241 (300)
T 2qc5_A          166 NNSIGRITNTGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGNK-IGRITT-TGEISE-YDIPTPNARPHAITAGKNS  241 (300)
T ss_dssp             TTEEEEECTTCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTE-EEEECT-TCCEEE-EECSSTTCCEEEEEECSTT
T ss_pred             CCeEEEECCCCcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCCE-EEEEcC-CCcEEE-EECCCCCCCceEEEECCCC
Confidence            677877776544333 32  33456889999999987777666778 999998 565543 2221134568899999999


Q ss_pred             CEEEEEeCCCeEEEEEc
Q 014977          274 QWLAVASDKGTVHIFSL  290 (415)
Q Consensus       274 ~~l~s~s~dg~i~vwd~  290 (415)
                      ++.++...++.|..|+.
T Consensus       242 ~l~v~~~~~~~i~~~~~  258 (300)
T 2qc5_A          242 EIWFTEWGANQIGRITN  258 (300)
T ss_dssp             CEEEEETTTTEEEEECT
T ss_pred             CEEEeccCCCeEEEECC
Confidence            97766666788999987

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.52  E-value=2.4e-13  Score=137.36  Aligned_cols=244  Identities=8%  Similarity=-0.075  Sum_probs=156.7

Q ss_pred             CCCCCceEEEEEeCCCCEEEEEe------CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCC----
Q 014977           41 DVDEIELISVSWNQDYGCFAAGT------SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQ----  110 (415)
Q Consensus        41 ~~h~~~V~~l~~sp~g~~la~g~------d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~----  110 (415)
                      .+|...+..++|||||++||.+.      +..|++||+++++......+..  .....+.|++++..|+....+..    
T Consensus       117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--~~~~~~~wspDg~~l~~~~~d~~~~~~  194 (695)
T 2bkl_A          117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEG--GKYATPKWTPDSKGFYYEWLPTDPSIK  194 (695)
T ss_dssp             SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSC--CTTCCCEECTTSSEEEEEECCCCTTSC
T ss_pred             cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCc--ccccceEEecCCCEEEEEEecCCCCCc
Confidence            45667899999999999999554      3579999999866430111211  11146789999877777665411    


Q ss_pred             ----CCCCeEEEEECCCCCE--EEEEE---ccCceeEEEEcCCeEEEE---eCC----eEEEEEcCCceeeeEEeccCCC
Q 014977          111 ----YPPTKVIIWDDHQSRC--IGEFA---FRSDVRSVKLSRDRIVVV---LEH----KIYVYSFVDLKLLHQIETLANL  174 (415)
Q Consensus       111 ----~~~~~i~vwd~~~~~~--~~~~~---~~~~i~~l~~~~~~~~~~---~d~----~i~iwd~~~~~~~~~~~~~~~~  174 (415)
                          .....|++|++.+++.  ...+.   +...+..+.|+|||++++   .++    .|++|+..+++. ..+..+...
T Consensus       195 ~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~  273 (695)
T 2bkl_A          195 VDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGVGA  273 (695)
T ss_dssp             GGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECSSC
T ss_pred             cccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCCCc
Confidence                0123499999988762  22232   345788999999998877   344    677777655543 334333332


Q ss_pred             cceEEEecCCCceEEEEeCC---ccCeEEEEEcCCcc---eEEEecC--ccceEEEEeCCCCCEEEEEeCCCcEEEEEEC
Q 014977          175 RGLCCLSHHSSTSVLACPGL---QRGQVRIEHFGLNM---IKLINAH--DSHIACFTLTLDGLLLATASTRGTLIRIFNT  246 (415)
Q Consensus       175 ~~~~~~~~~~~~~~l~~~g~---~dg~v~i~~~~~~~---~~~~~~~--~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~  246 (415)
                      ..  ...+ +++.+++. +.   .++.|.+|+.....   ...+..+  ...+..++|+ ++.++++...|+. .+||.+
T Consensus       274 ~~--~~~~-~~g~l~~~-s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~-~~l~~~  347 (695)
T 2bkl_A          274 KY--EVHA-WKDRFYVL-TDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDAT-SEVRVA  347 (695)
T ss_dssp             CE--EEEE-ETTEEEEE-ECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTE-EEEEEE
T ss_pred             eE--EEEe-cCCcEEEE-ECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCE-EEEEEE
Confidence            22  2222 23444433 33   25778888775533   2444444  4567888888 7778888888987 777755


Q ss_pred             C-CCcEEEEEecCCCcccEEEEEeCCCCCEEEEEe----CCCeEEEEEceecc
Q 014977          247 V-DGTRLQEVRRGVDRAEIYSIALSPNVQWLAVAS----DKGTVHIFSLRVRV  294 (415)
Q Consensus       247 ~-~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s----~dg~i~vwd~~~~~  294 (415)
                      . +++....+... ..+.+..++++|++..|+...    ..++|++||+.+++
T Consensus       348 ~~~g~~~~~l~~~-~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          348 TLKGKPVRTVQLP-GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             ETTCCEEEECCCS-SSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             eCCCCeeEEecCC-CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            4 46666666542 255788899999998776333    34689999998775

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.51  E-value=2.5e-12  Score=119.23  Aligned_cols=222  Identities=9%  Similarity=-0.012  Sum_probs=137.7

Q ss_pred             CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCC-----CCCCCeEEEEECCCCCEEEEEEc------
Q 014977           64 SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNS-----QYPPTKVIIWDDHQSRCIGEFAF------  132 (415)
Q Consensus        64 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~-----~~~~~~i~vwd~~~~~~~~~~~~------  132 (415)
                      |+.|.+||.++.+....  +..+. .. .+.+++++..+..+....     .-.++.|.+||..+++.+.++..      
T Consensus        30 d~~v~v~D~~t~~~~~~--i~~g~-~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~  105 (361)
T 2oiz_A           30 ESRVHVYDYTNGKFLGM--VPTAF-NG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQ  105 (361)
T ss_dssp             GCEEEEEETTTCCEEEE--EECCE-EE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCC
T ss_pred             cCeEEEEECCCCeEEEE--ecCCC-CC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccc
Confidence            56899999988765443  32333 33 889999987666543100     00126799999999999988872      


Q ss_pred             -cCceeEEEEcCCeEEEE---e--CCeEEEEEcCCceeeeE-EeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcC
Q 014977          133 -RSDVRSVKLSRDRIVVV---L--EHKIYVYSFVDLKLLHQ-IETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG  205 (415)
Q Consensus       133 -~~~i~~l~~~~~~~~~~---~--d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~  205 (415)
                       ......++++|++++++   .  ++.|.+||+.+++.+.. +.....  ....+.+++...+++  .+.||.+.++...
T Consensus       106 ~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~--~~v~~~p~~~~~~~~--~~~dg~~~~v~~~  181 (361)
T 2oiz_A          106 GLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGC--WSVIPQPNRPRSFMT--ICGDGGLLTINLG  181 (361)
T ss_dssp             BCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTE--EEEEECTTSSSEEEE--EETTSSEEEEEEC
T ss_pred             cCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCc--ceeEEcCCCCeeEEE--ECCCCcEEEEEEC
Confidence             24567899999998876   2  57899999999988877 543221  113344444333333  3357777765543


Q ss_pred             --CcceEEE------ecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcE--EEEEecCC----C----cccEEEE
Q 014977          206 --LNMIKLI------NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR--LQEVRRGV----D----RAEIYSI  267 (415)
Q Consensus       206 --~~~~~~~------~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~--~~~~~~~~----~----~~~v~~l  267 (415)
                        ++.....      ..+..++ .+.+++++..++..+.++. |.++|+.....  ...+....    .    ......+
T Consensus       182 ~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~-v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~  259 (361)
T 2oiz_A          182 EDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGN-VYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLV  259 (361)
T ss_dssp             TTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSE-EEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCE
T ss_pred             CCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCe-EEEEEecCCCceecccccccCccccccccccCCeeEE
Confidence              3322111      1122222 2334577777777888898 99999875542  22222100    0    0111237


Q ss_pred             EeCCCCCEEEEEeC-----------CCeEEEEEceeccc
Q 014977          268 ALSPNVQWLAVASD-----------KGTVHIFSLRVRVV  295 (415)
Q Consensus       268 ~~spdg~~l~s~s~-----------dg~i~vwd~~~~~~  295 (415)
                      +|+|+++.++++..           .+.|.+||+.+++.
T Consensus       260 a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~  298 (361)
T 2oiz_A          260 GLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQR  298 (361)
T ss_dssp             EEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEE
T ss_pred             EEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcE
Confidence            89999888877643           34899999988774

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.51  E-value=9.9e-13  Score=132.86  Aligned_cols=231  Identities=11%  Similarity=-0.006  Sum_probs=147.9

Q ss_pred             eCCCCEEEEEe-CC---cEEEEEcc--CCceeEEEec----cCCCeeEEEEeeeCCeEEEE-----ecCCCCCCCCCeEE
Q 014977           53 NQDYGCFAAGT-SC---GFRIYNCE--PFKETFRRDL----KSGGFRIVEMLFRCNILALV-----GAGDNSQYPPTKVI  117 (415)
Q Consensus        53 sp~g~~la~g~-d~---~v~iw~~~--~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~-----s~~~d~~~~~~~i~  117 (415)
                      +|+|++++... ++   .-.||..+  ..+.......    .++...+..+.|+||+..++     +++.+     ..|+
T Consensus        76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~-----~~i~  150 (695)
T 2bkl_A           76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADE-----AVLH  150 (695)
T ss_dssp             EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSC-----CEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCce-----EEEE
Confidence            47899888766 33   35566654  2222221111    13445688899999998887     44444     7999


Q ss_pred             EEECCCCCEE-EEEEccCceeEEEEcCCeEEEE---eCCe-------------EEEEEcCCcee--eeEEeccCCCcceE
Q 014977          118 IWDDHQSRCI-GEFAFRSDVRSVKLSRDRIVVV---LEHK-------------IYVYSFVDLKL--LHQIETLANLRGLC  178 (415)
Q Consensus       118 vwd~~~~~~~-~~~~~~~~i~~l~~~~~~~~~~---~d~~-------------i~iwd~~~~~~--~~~~~~~~~~~~~~  178 (415)
                      +||+.+++.+ ...........++|+||++.++   .+..             |++|++.+++.  ...+..........
T Consensus       151 v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~  230 (695)
T 2bkl_A          151 VIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFL  230 (695)
T ss_dssp             EEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEE
T ss_pred             EEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEE
Confidence            9999999864 2111111126899999998777   3443             99999987763  22333333333566


Q ss_pred             EEecCCCceEEEEeCCcc-C--eEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEe---CCCcEEEEEECCCCcE-
Q 014977          179 CLSHHSSTSVLACPGLQR-G--QVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATAS---TRGTLIRIFNTVDGTR-  251 (415)
Q Consensus       179 ~~~~~~~~~~l~~~g~~d-g--~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s---~dg~~I~vwd~~~~~~-  251 (415)
                      .+.+++++++|+++...+ +  .|.+++........+..+...+....+ ++|.+++...   .++. |.+||+.+++. 
T Consensus       231 ~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~-l~~~d~~~~~~~  308 (695)
T 2bkl_A          231 QSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQR-VFEVDPAKPARA  308 (695)
T ss_dssp             EEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCE-EEEEBTTBCSGG
T ss_pred             EEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCcEEEEECCCCCCCE-EEEEeCCCCCcc
Confidence            777788888887754333 3  455554444456667777666677767 5666444444   2467 99999987753 


Q ss_pred             -EEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEce
Q 014977          252 -LQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR  291 (415)
Q Consensus       252 -~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~  291 (415)
                       ...+..+.....+..++|+ ++.++++...|+..+||.+.
T Consensus       309 ~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~  348 (695)
T 2bkl_A          309 SWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT  348 (695)
T ss_dssp             GCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred             CCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence             2334332124568888998 77888899999998888776

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.47  E-value=2.9e-10  Score=111.11  Aligned_cols=237  Identities=15%  Similarity=0.068  Sum_probs=160.2

Q ss_pred             CceEEEEEeCCCCEEEEEe-CCcEEEEEcc--CCceeEEEeccCCCeeEEEEeee----CCeEEEEecCCCCCCCCCeEE
Q 014977           45 IELISVSWNQDYGCFAAGT-SCGFRIYNCE--PFKETFRRDLKSGGFRIVEMLFR----CNILALVGAGDNSQYPPTKVI  117 (415)
Q Consensus        45 ~~V~~l~~sp~g~~la~g~-d~~v~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~s~~~d~~~~~~~i~  117 (415)
                      ..+..+.|+|||+++++++ ++.|.+||+.  +.+......  . ......+.++    |++.+++.+...    ++.|.
T Consensus       197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~--~-G~~P~~ia~s~~~~pDGk~l~v~n~~----~~~v~  269 (567)
T 1qks_A          197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK--I-GSEARSIETSKMEGWEDKYAIAGAYW----PPQYV  269 (567)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE--C-CSEEEEEEECCSTTCTTTEEEEEEEE----TTEEE
T ss_pred             CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe--c-CCCCceeEEccccCCCCCEEEEEEcc----CCeEE
Confidence            4567999999999999988 9999999995  554443322  2 3345678888    587555444332    38999


Q ss_pred             EEECCCCCEEEEEEcc------------CceeEEEEcCCeEEEE----eCCeEEEEEcCCceeeeEEeccCCCcceEEEe
Q 014977          118 IWDDHQSRCIGEFAFR------------SDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLS  181 (415)
Q Consensus       118 vwd~~~~~~~~~~~~~------------~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  181 (415)
                      |+|..+.+.+..+...            ..+..+..++++..++    .+|.|.++|..+.+.+....... ......+.
T Consensus       270 ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~-~~~~~d~~  348 (567)
T 1qks_A          270 IMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISA-ERFLHDGG  348 (567)
T ss_dssp             EEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEEC-CSSEEEEE
T ss_pred             EEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeec-cccccCce
Confidence            9999999999887621            2577888888755444    57999999987754333222111 11344566


Q ss_pred             cCCCceEEEEeCCccCeEEEEEcCC-cceEEEec-----CccceEEEEeCCCCCEE-EEEe-CCCcEEEEEECCC-----
Q 014977          182 HHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINA-----HDSHIACFTLTLDGLLL-ATAS-TRGTLIRIFNTVD-----  248 (415)
Q Consensus       182 ~~~~~~~l~~~g~~dg~v~i~~~~~-~~~~~~~~-----~~~~i~~l~~sp~g~~l-~s~s-~dg~~I~vwd~~~-----  248 (415)
                      +++++++++++...++.|.+++... +.+..+..     |.+.-..+ ++|++..+ +++. .++. |.++|..+     
T Consensus       349 ~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~-Vsvid~~~~~~~~  426 (567)
T 1qks_A          349 LDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDS-VALIGTDPEGHPD  426 (567)
T ss_dssp             ECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSE-EEEEECCTTTCTT
T ss_pred             ECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCe-EEEecCCCCCCcc
Confidence            7778888776666778899866554 44444443     22212122 57875544 4443 3577 99999987     


Q ss_pred             --CcEEEEEecCCCcccEEEEEeCCCCCEEEEEeC-------CCeEEEEEceec
Q 014977          249 --GTRLQEVRRGVDRAEIYSIALSPNVQWLAVASD-------KGTVHIFSLRVR  293 (415)
Q Consensus       249 --~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~-------dg~i~vwd~~~~  293 (415)
                        .+.++++...  ...-..+..+|++++|.+...       .++|.|+|+.+.
T Consensus       427 ~~~kvv~~i~~~--g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~  478 (567)
T 1qks_A          427 NAWKILDSFPAL--GGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM  478 (567)
T ss_dssp             TBTSEEEEEECS--CSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred             ccCEEEEEEecC--CCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence              6788888762  223345778999999998763       358999999987

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.45  E-value=1.4e-10  Score=107.67  Aligned_cols=234  Identities=9%  Similarity=-0.032  Sum_probs=152.1

Q ss_pred             EEEEeCCCCEEEEEe-----------CCcEEEEEccCCceeEEEeccCC-----CeeEEEEeeeCCeEEEEecCCCCCCC
Q 014977           49 SVSWNQDYGCFAAGT-----------SCGFRIYNCEPFKETFRRDLKSG-----GFRIVEMLFRCNILALVGAGDNSQYP  112 (415)
Q Consensus        49 ~l~~sp~g~~la~g~-----------d~~v~iw~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~s~~~d~~~~  112 (415)
                      .++++|||++|+++.           ++.|.+||..+.+......+...     ......+.++|++..+..+...   .
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~---~  146 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA---A  146 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecC---C
Confidence            899999999998874           46799999987766554443200     1234478899998877765431   1


Q ss_pred             CCeEEEEECCCCCEEEE-EEccCceeEEEEcCCe--EEEE--eCCeEEEEEcCCceeeeEEe-----ccCCCcce-EEEe
Q 014977          113 PTKVIIWDDHQSRCIGE-FAFRSDVRSVKLSRDR--IVVV--LEHKIYVYSFVDLKLLHQIE-----TLANLRGL-CCLS  181 (415)
Q Consensus       113 ~~~i~vwd~~~~~~~~~-~~~~~~i~~l~~~~~~--~~~~--~d~~i~iwd~~~~~~~~~~~-----~~~~~~~~-~~~~  181 (415)
                      .+.|.++| .+++.+.. +.....   +.+.+++  .++.  .|+.+.++|. +++.+....     ....++.. ..+.
T Consensus       147 ~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~  221 (373)
T 2mad_H          147 GPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQA  221 (373)
T ss_pred             CCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeE
Confidence            27899999 99999888 664433   3344443  2233  6899999999 877664332     11111100 1222


Q ss_pred             cCCCceEEEEeCCccCeEEEEEcCCcc---eEEEec----------CccceEEEEeCCCCCEEEEEeC----------CC
Q 014977          182 HHSSTSVLACPGLQRGQVRIEHFGLNM---IKLINA----------HDSHIACFTLTLDGLLLATAST----------RG  238 (415)
Q Consensus       182 ~~~~~~~l~~~g~~dg~v~i~~~~~~~---~~~~~~----------~~~~i~~l~~sp~g~~l~s~s~----------dg  238 (415)
                      .+.. .++ +.. ..+.+.+.+.....   +..+..          .......+.++|+++.|+++..          .+
T Consensus       222 ~~~~-~~~-~~~-~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~  298 (373)
T 2mad_H          222 NKSG-RIV-WPV-YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAK  298 (373)
T ss_pred             ecCC-EEE-EEc-CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCC
Confidence            3322 233 323 46677775554322   122211          1122344789999998777653          34


Q ss_pred             cEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCC-EEEEEe-CCCeEEEEEceecccCC
Q 014977          239 TLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQ-WLAVAS-DKGTVHIFSLRVRVVGE  297 (415)
Q Consensus       239 ~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~-~l~s~s-~dg~i~vwd~~~~~~~~  297 (415)
                      . |.++|+.+++.+..+..+   ....+++|+|||+ +++++. .++.|.+||+.+++...
T Consensus       299 ~-V~VID~~t~~vv~~i~~g---~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~  355 (373)
T 2mad_H          299 E-VTSVTGLVGQTSSQISLG---HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQ  355 (373)
T ss_pred             e-EEEEECCCCEEEEEEECC---CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEe
Confidence            6 999999999999999753   3578999999999 777776 48999999999988653

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.45  E-value=1.3e-10  Score=104.67  Aligned_cols=222  Identities=11%  Similarity=0.049  Sum_probs=148.0

Q ss_pred             CCCceEEEEEeCCCCEE-EEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEE
Q 014977           43 DEIELISVSWNQDYGCF-AAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD  120 (415)
Q Consensus        43 h~~~V~~l~~sp~g~~l-a~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd  120 (415)
                      +..-..+..|++++..| ++.. ++.|..|+.++.... ..   .....+..+.+++++.++++.  +     +.|.+||
T Consensus        11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~---~~~~~~~~i~~~~dG~l~v~~--~-----~~l~~~d   79 (297)
T 3g4e_A           11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV---TMDAPVSSVALRQSGGYVATI--G-----TKFCALN   79 (297)
T ss_dssp             CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE---ECSSCEEEEEEBTTSSEEEEE--T-----TEEEEEE
T ss_pred             CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE---eCCCceEEEEECCCCCEEEEE--C-----CeEEEEE
Confidence            33456688999965554 4554 889999998875432 22   223457788899988876664  2     7899999


Q ss_pred             CCCCCEEEEEEc-----cCceeEEEEcCCeEEEEeC------------CeEEEEEcC-CceeeeEEeccCCCcceEEEec
Q 014977          121 DHQSRCIGEFAF-----RSDVRSVKLSRDRIVVVLE------------HKIYVYSFV-DLKLLHQIETLANLRGLCCLSH  182 (415)
Q Consensus       121 ~~~~~~~~~~~~-----~~~i~~l~~~~~~~~~~~d------------~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~  182 (415)
                      ..+++.......     ...+++++++|+|++.+.+            ....+|.+. +++...... ...  ....+.+
T Consensus        80 ~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~-~~~--~pngi~~  156 (297)
T 3g4e_A           80 WKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFD-QVD--ISNGLDW  156 (297)
T ss_dssp             TTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEE-EES--BEEEEEE
T ss_pred             CCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEee-ccc--cccceEE
Confidence            888765443332     2357889999999877721            233455443 233332222 222  3345666


Q ss_pred             CCCceEEEEeCCccCeEEEEEcC---Ccc-----eEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEE
Q 014977          183 HSSTSVLACPGLQRGQVRIEHFG---LNM-----IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQE  254 (415)
Q Consensus       183 ~~~~~~l~~~g~~dg~v~i~~~~---~~~-----~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~  254 (415)
                      ++++..++++.+.++.|.+++.+   +..     ...+..+......++++++|++.++....+. |.+||..+++.+..
T Consensus       157 spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~-v~~~d~~tG~~~~~  235 (297)
T 3g4e_A          157 SLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGR-VIRLDPVTGKRLQT  235 (297)
T ss_dssp             CTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTE-EEEECTTTCCEEEE
T ss_pred             cCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCE-EEEEcCCCceEEEE
Confidence            67776666556667888887653   221     1122233456789999999998887777788 99999988999988


Q ss_pred             EecCCCcccEEEEEeC-CCCCEEEEEeC
Q 014977          255 VRRGVDRAEIYSIALS-PNVQWLAVASD  281 (415)
Q Consensus       255 ~~~~~~~~~v~~l~~s-pdg~~l~s~s~  281 (415)
                      +..  ....+++++|. |+++.|++.+.
T Consensus       236 i~~--p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          236 VKL--PVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             EEC--SSSBEEEEEEESGGGCEEEEEEB
T ss_pred             EEC--CCCCceEEEEeCCCCCEEEEEcC
Confidence            886  44579999998 88887765554

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.45  E-value=6.4e-10  Score=99.55  Aligned_cols=235  Identities=8%  Similarity=-0.047  Sum_probs=158.6

Q ss_pred             CCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEEC
Q 014977           43 DEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD  121 (415)
Q Consensus        43 h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~  121 (415)
                      +...+.++++.++|.++++.. ++.|..|+.+.  ......+......+..+.+.+++.++++...+     +.|.+||.
T Consensus        55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g--~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-----~~i~~~d~  127 (299)
T 2z2n_A           55 PDAKVMCLTISSDGEVWFTENAANKIGRITKKG--IIKEYTLPNPDSAPYGITEGPNGDIWFTEMNG-----NRIGRITD  127 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTTS--CEEEEECSSTTCCEEEEEECTTSCEEEEETTT-----TEEEEECT
T ss_pred             ccCceeeEEECCCCCEEEeCCCCCeEEEECCCC--cEEEEeCCCcCCCceeeEECCCCCEEEEecCC-----ceEEEECC
Confidence            446799999999999888877 78899998762  22222232345567888899988777776554     89999997


Q ss_pred             CCCCEEEEEE--ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCcc
Q 014977          122 HQSRCIGEFA--FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR  196 (415)
Q Consensus       122 ~~~~~~~~~~--~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  196 (415)
                       +++......  ....+..+++.+++.+.+   .++.|.+||. +++... +...........+..++++.+.++ ...+
T Consensus       128 -~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~-~~~~  203 (299)
T 2z2n_A          128 -DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITE-FKIPTPASGPVGITKGNDDALWFV-EIIG  203 (299)
T ss_dssp             -TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEE-ETTT
T ss_pred             -CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE-eeCCCCCCcceeEEECCCCCEEEE-ccCC
Confidence             665443222  345789999999987776   2578999998 665443 222222224566777777776554 3456


Q ss_pred             CeEEEEEcCCcceEEE--ecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCC
Q 014977          197 GQVRIEHFGLNMIKLI--NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQ  274 (415)
Q Consensus       197 g~v~i~~~~~~~~~~~--~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~  274 (415)
                      +.|.+++.++. +..+  ..+...+..++++++|+++++...++. |.+||. +++ +..+....+...+.++++ ++|+
T Consensus       204 ~~i~~~~~~g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~-i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~  278 (299)
T 2z2n_A          204 NKIGRITTSGE-ITEFKIPTPNARPHAITAGAGIDLWFTEWGANK-IGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGET  278 (299)
T ss_dssp             TEEEEECTTCC-EEEEECSSTTCCEEEEEECSTTCEEEEETTTTE-EEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSC
T ss_pred             ceEEEECCCCc-EEEEECCCCCCCceeEEECCCCCEEEeccCCce-EEEECC-CCc-eEEEeCCCCCCccceEEe-cCCC
Confidence            77888777444 3333  234567889999999997776657788 999998 554 334432223457899999 8888


Q ss_pred             EEEEEeCCCeEEEEEceecc
Q 014977          275 WLAVASDKGTVHIFSLRVRV  294 (415)
Q Consensus       275 ~l~s~s~dg~i~vwd~~~~~  294 (415)
                      +.++.. .+.|..++.++++
T Consensus       279 l~v~~~-~~~l~~~~~~~~~  297 (299)
T 2z2n_A          279 IWFAME-CDKIGKLTLIKDN  297 (299)
T ss_dssp             EEEEET-TTEEEEEEEC---
T ss_pred             EEEEec-CCcEEEEEcCccc
Confidence            766655 5668888877653

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.44  E-value=9.7e-11  Score=110.30  Aligned_cols=236  Identities=8%  Similarity=-0.010  Sum_probs=155.7

Q ss_pred             CCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECC
Q 014977           44 EIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH  122 (415)
Q Consensus        44 ~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~  122 (415)
                      -.....++|+++++++++.. ++.|++|+.++........  .... .. +.+++++..++.+..+   ....|.+++..
T Consensus       130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~--~~~~-~~-ia~~~~g~~l~~~d~~---~~~~I~~~d~~  202 (409)
T 3hrp_A          130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHP--GFKG-GK-PAVTKDKQRVYSIGWE---GTHTVYVYMKA  202 (409)
T ss_dssp             CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEE--TCCB-CB-CEECTTSSEEEEEBSS---TTCEEEEEEGG
T ss_pred             cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeec--cCCC-Cc-eeEecCCCcEEEEecC---CCceEEEEEcC
Confidence            34688999999999777777 7899999998644332222  2222 22 7788887655554443   00289999987


Q ss_pred             CCCEEEEE----E-ccCceeEEEEcC-CeEEEE--eCCeEEEEEcCCceeeeE----EeccCCCcceE-EEecCCC-ceE
Q 014977          123 QSRCIGEF----A-FRSDVRSVKLSR-DRIVVV--LEHKIYVYSFVDLKLLHQ----IETLANLRGLC-CLSHHSS-TSV  188 (415)
Q Consensus       123 ~~~~~~~~----~-~~~~i~~l~~~~-~~~~~~--~d~~i~iwd~~~~~~~~~----~~~~~~~~~~~-~~~~~~~-~~~  188 (415)
                      .+.....+    . ....+.+++++| ++.+++  .++.|+.||..++.....    ...... .... .+.++++ +.+
T Consensus       203 ~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~-~~P~~~ia~~p~~g~l  281 (409)
T 3hrp_A          203 SGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLG-TNPGPYLIYYFVDSNF  281 (409)
T ss_dssp             GTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCC-CSSCCEEEEETTTTEE
T ss_pred             CCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCC-CCccccEEEeCCCCEE
Confidence            76654454    2 346678899999 676666  567899999877653222    111111 1111 4555553 444


Q ss_pred             EEEeCCccCeEEEEEcCCcceEEEecCc---------------cceEEEEeCCCCCEEEEEe-CCCcEEEEEECCCCcEE
Q 014977          189 LACPGLQRGQVRIEHFGLNMIKLINAHD---------------SHIACFTLTLDGLLLATAS-TRGTLIRIFNTVDGTRL  252 (415)
Q Consensus       189 l~~~g~~dg~v~i~~~~~~~~~~~~~~~---------------~~i~~l~~sp~g~~l~s~s-~dg~~I~vwd~~~~~~~  252 (415)
                      + ++...++.|+.++.++. +..+.++.               .....++++++|+++++-. .++. |+.||+.+++..
T Consensus       282 y-v~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~-I~~~~~~~G~v~  358 (409)
T 3hrp_A          282 Y-MSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYC-LRKLDILDGYVS  358 (409)
T ss_dssp             E-EEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCE-EEEEETTTTEEE
T ss_pred             E-EEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCE-EEEEECCCCEEE
Confidence            4 44567788888887765 33343332               3478999999999777766 6777 999998787654


Q ss_pred             EEEecC-C------------CcccEEEEEeCCCCCEEEEEeCCCeEEEEEce
Q 014977          253 QEVRRG-V------------DRAEIYSIALSPNVQWLAVASDKGTVHIFSLR  291 (415)
Q Consensus       253 ~~~~~~-~------------~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~  291 (415)
                       .+.+. .            .-.....++++++|.++++-..++.|+.++++
T Consensus       359 -~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          359 -TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             -EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred             -EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence             44331 0            01358899999999888888888889888763

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.43  E-value=1.2e-10  Score=105.29  Aligned_cols=195  Identities=7%  Similarity=-0.012  Sum_probs=128.3

Q ss_pred             eEEEEeeeCCeEEEEe-------cCCCCCCCCCeEEEEECCCCCEEEEEE-----ccCceeEEEEcCC-eEEEE--eCCe
Q 014977           89 RIVEMLFRCNILALVG-------AGDNSQYPPTKVIIWDDHQSRCIGEFA-----FRSDVRSVKLSRD-RIVVV--LEHK  153 (415)
Q Consensus        89 ~~~~~~~~~~~~~l~s-------~~~d~~~~~~~i~vwd~~~~~~~~~~~-----~~~~i~~l~~~~~-~~~~~--~d~~  153 (415)
                      ....+.|++++.++++       ...+     +.|.+||..+++......     +...+.++.++++ +.+++  ..+.
T Consensus        19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~-----~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~   93 (314)
T 1pjx_A           19 GAEGPVFDKNGDFYIVAPEVEVNGKPA-----GEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLG   93 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEEC-----CEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTE
T ss_pred             CccCceECCCCCEEEEEeccccCCCCC-----CEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCC
Confidence            3456778888877776       4444     899999988887654332     3467899999999 87655  3568


Q ss_pred             EEEEEcCCceeeeE-EeccC--CCcceEEEecCCCceEEEEeCCcc---------------CeEEEEEcCCcceEEEecC
Q 014977          154 IYVYSFVDLKLLHQ-IETLA--NLRGLCCLSHHSSTSVLACPGLQR---------------GQVRIEHFGLNMIKLINAH  215 (415)
Q Consensus       154 i~iwd~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~l~~~g~~d---------------g~v~i~~~~~~~~~~~~~~  215 (415)
                      |.+||.. ++.... .....  ....+..+..++++.++++.. .+               +.|..++..++ ...+..+
T Consensus        94 l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~g~-~~~~~~~  170 (314)
T 1pjx_A           94 LLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAP-AGEVAPADYTRSMQEKFGSIYCFTTDGQ-MIQVDTA  170 (314)
T ss_dssp             EEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEEC-BCBCTTSCCCBTTSSSCEEEEEECTTSC-EEEEEEE
T ss_pred             EEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEec-CcccccccccccccCCCCeEEEECCCCC-EEEeccC
Confidence            9999987 665432 22111  112345666777777665533 33               45555655533 3333334


Q ss_pred             ccceEEEEeC----CCCCEEEEE-eCCCcEEEEEECC-CCcE-----EEEEecCCCc-ccEEEEEeCCCCCEEEEEeCCC
Q 014977          216 DSHIACFTLT----LDGLLLATA-STRGTLIRIFNTV-DGTR-----LQEVRRGVDR-AEIYSIALSPNVQWLAVASDKG  283 (415)
Q Consensus       216 ~~~i~~l~~s----p~g~~l~s~-s~dg~~I~vwd~~-~~~~-----~~~~~~~~~~-~~v~~l~~spdg~~l~s~s~dg  283 (415)
                      ......++++    |+|+.|+.+ ..++. |.+||+. +++.     ...+..  +. ..+..++++++|+++++...++
T Consensus       171 ~~~~~~i~~~~~~d~dg~~l~v~~~~~~~-i~~~~~~~~g~~~~~~~~~~~~~--~~~~~p~~i~~d~~G~l~v~~~~~~  247 (314)
T 1pjx_A          171 FQFPNGIAVRHMNDGRPYQLIVAETPTKK-LWSYDIKGPAKIENKKVWGHIPG--THEGGADGMDFDEDNNLLVANWGSS  247 (314)
T ss_dssp             ESSEEEEEEEECTTSCEEEEEEEETTTTE-EEEEEEEETTEEEEEEEEEECCC--CSSCEEEEEEEBTTCCEEEEEETTT
T ss_pred             CCCcceEEEecccCCCCCEEEEEECCCCe-EEEEECCCCCccccceEEEECCC--CCCCCCCceEECCCCCEEEEEcCCC
Confidence            4556889999    999766555 45677 9999986 4542     222222  22 4678899999999888887888


Q ss_pred             eEEEEEceecc
Q 014977          284 TVHIFSLRVRV  294 (415)
Q Consensus       284 ~i~vwd~~~~~  294 (415)
                      .|.+||.++++
T Consensus       248 ~i~~~d~~~g~  258 (314)
T 1pjx_A          248 HIEVFGPDGGQ  258 (314)
T ss_dssp             EEEEECTTCBS
T ss_pred             EEEEEcCCCCc
Confidence            99999987654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.42  E-value=9.4e-10  Score=98.93  Aligned_cols=198  Identities=11%  Similarity=0.033  Sum_probs=131.9

Q ss_pred             eEEEEeeeC-CeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE-eCCeEEEEEcCCceeee
Q 014977           89 RIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLH  166 (415)
Q Consensus        89 ~~~~~~~~~-~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~  166 (415)
                      ..-...|++ ++.++++....     +.|..||..+++. ..+.....+.++++++++.+++ .++.|.+||..+++...
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~-----~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG~l~v~~~~~l~~~d~~~g~~~~   87 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPA-----KKVCRWDSFTKQV-QRVTMDAPVSSVALRQSGGYVATIGTKFCALNWKEQSAVV   87 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTT-----TEEEEEETTTCCE-EEEECSSCEEEEEEBTTSSEEEEETTEEEEEETTTTEEEE
T ss_pred             cccCCeEECCCCEEEEEECCC-----CEEEEEECCCCcE-EEEeCCCceEEEEECCCCCEEEEECCeEEEEECCCCcEEE
Confidence            344677887 45566665554     8999999887765 4556778899999999998777 78899999998876543


Q ss_pred             EEeccC--CCcceEEEecCCCceEEEEeCC----------ccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEE-
Q 014977          167 QIETLA--NLRGLCCLSHHSSTSVLACPGL----------QRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLAT-  233 (415)
Q Consensus       167 ~~~~~~--~~~~~~~~~~~~~~~~l~~~g~----------~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s-  233 (415)
                      ......  .......+..++++.+++.+..          ..+.|...+..++ ...+..+....+.++|+|+++.|+. 
T Consensus        88 ~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~~~~~~~pngi~~spdg~~lyv~  166 (297)
T 3g4e_A           88 LATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH-VKKYFDQVDISNGLDWSLDHKIFYYI  166 (297)
T ss_dssp             EEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC-EEEEEEEESBEEEEEECTTSCEEEEE
T ss_pred             EEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC-EEEEeeccccccceEEcCCCCEEEEe
Confidence            332211  1224566777888876654311          1123333443333 3333344455688999999987654 


Q ss_pred             EeCCCcEEEEEEC--CCCcEE--EEEec-CCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977          234 ASTRGTLIRIFNT--VDGTRL--QEVRR-GVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (415)
Q Consensus       234 ~s~dg~~I~vwd~--~~~~~~--~~~~~-~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  294 (415)
                      .+.++. |.+||+  .++...  ..+.. ......+..++++++|++.++....+.|.+||.++++
T Consensus       167 ~~~~~~-i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~  231 (297)
T 3g4e_A          167 DSLSYS-VDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGK  231 (297)
T ss_dssp             EGGGTE-EEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCC
T ss_pred             cCCCCc-EEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCce
Confidence            455677 999987  456532  12221 1133567899999999988887788899999988776

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.42  E-value=3.3e-11  Score=106.55  Aligned_cols=194  Identities=8%  Similarity=-0.031  Sum_probs=127.0

Q ss_pred             eEEEEeeeCCeEEEE-ecCCCCCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE--eCCeEEEEEcCCcee
Q 014977           89 RIVEMLFRCNILALV-GAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKL  164 (415)
Q Consensus        89 ~~~~~~~~~~~~~l~-s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~  164 (415)
                      ....+.+++++.+++ +...+     +.|.+|+..++....... ....+.++++++++.+++  .++.|.+||......
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~   99 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMY-----GRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQ   99 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSS-----CEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCC
T ss_pred             CccceEECCCCCEEEEccCCC-----CcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceE
Confidence            567788888887777 64554     899999965544321111 235688999999988666  368999999765443


Q ss_pred             eeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEE-ecCccceEEEEeCCCCCEEEEEeCCCcEEEE
Q 014977          165 LHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLI-NAHDSHIACFTLTLDGLLLATASTRGTLIRI  243 (415)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~-~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~v  243 (415)
                       ..+.... ......+..++++.++++ ...++.|.+++......... ......+..++++++|+++++...++. |.+
T Consensus       100 -~~~~~~~-~~~p~~i~~~~~g~l~v~-~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~-i~~  175 (270)
T 1rwi_B          100 -TVLPFDG-LNYPEGLAVDTQGAVYVA-DRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNR-VVK  175 (270)
T ss_dssp             -EECCCCS-CSSEEEEEECTTCCEEEE-EGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTE-EEE
T ss_pred             -eeeecCC-cCCCcceEECCCCCEEEE-ECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCE-EEE
Confidence             2222111 124566667777766554 44577888875443322221 223346788999999997777777788 999


Q ss_pred             EECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceec
Q 014977          244 FNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR  293 (415)
Q Consensus       244 wd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~  293 (415)
                      ||............  ....+.+++++++|.++++...++.|.+|+....
T Consensus       176 ~~~~~~~~~~~~~~--~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~  223 (270)
T 1rwi_B          176 LEAESNNQVVLPFT--DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST  223 (270)
T ss_dssp             ECTTTCCEEECCCS--SCCSEEEEEECTTCCEEEEETTTSCEEEECTTCS
T ss_pred             EecCCCceEeeccc--CCCCceEEEECCCCCEEEEECCCCcEEEEcCCCC
Confidence            99876665432222  2256889999999987777777888999997554

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.39  E-value=2.7e-11  Score=123.30  Aligned_cols=243  Identities=11%  Similarity=-0.013  Sum_probs=151.6

Q ss_pred             CCCCceEEEEEeCCCCEEEEEe--CC----cEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCC----
Q 014977           42 VDEIELISVSWNQDYGCFAAGT--SC----GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQY----  111 (415)
Q Consensus        42 ~h~~~V~~l~~sp~g~~la~g~--d~----~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~----  111 (415)
                      +|...+..++|||||++||.+.  +|    .|++||+++++... ..+  ....+..+.|+++ ..|+.+..+...    
T Consensus       160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~-~~~--~~~~~~~~~wspD-~~l~~~~~~~~~~~~~  235 (741)
T 1yr2_A          160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLA-DEL--KWVKFSGLAWLGN-DALLYSRFAEPKEGQA  235 (741)
T ss_dssp             ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEE-EEE--EEEESCCCEESTT-SEEEEEECCCC-----
T ss_pred             CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCC-ccC--CCceeccEEEECC-CEEEEEEecCcccccc
Confidence            3445788999999999999876  33    59999999866432 221  1222246778998 555554443110    


Q ss_pred             -----CCCeEEEEECCCCCE--EEEEEc---cCceeEEEEcCCeEEEE---eC-----CeEEEEEcCCc--eeeeEEecc
Q 014977          112 -----PPTKVIIWDDHQSRC--IGEFAF---RSDVRSVKLSRDRIVVV---LE-----HKIYVYSFVDL--KLLHQIETL  171 (415)
Q Consensus       112 -----~~~~i~vwd~~~~~~--~~~~~~---~~~i~~l~~~~~~~~~~---~d-----~~i~iwd~~~~--~~~~~~~~~  171 (415)
                           ....|++|++.+++.  ...+..   ...+..+.|+|||++++   .+     ..|++||+.++  +....+..+
T Consensus       236 ~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~  315 (741)
T 1yr2_A          236 FQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPD  315 (741)
T ss_dssp             ---CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECS
T ss_pred             cccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCC
Confidence                 024699999887752  223332   23588999999998777   33     38999999876  314445444


Q ss_pred             CCCcceEEEecCCCceEEEEeCCc---cCeEEEEEcCC--cceEEE-ecCccceEEEEeCCCCCEEEEEeCCCcEEEEEE
Q 014977          172 ANLRGLCCLSHHSSTSVLACPGLQ---RGQVRIEHFGL--NMIKLI-NAHDSHIACFTLTLDGLLLATASTRGTLIRIFN  245 (415)
Q Consensus       172 ~~~~~~~~~~~~~~~~~l~~~g~~---dg~v~i~~~~~--~~~~~~-~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd  245 (415)
                      ..... ..+.  +++..|++....   ++.|.+++...  .....+ ..+...+..++++ ++.++++...|+. .+||.
T Consensus       316 ~~~~~-~~~~--~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~-~~l~~  390 (741)
T 1yr2_A          316 LKAQW-DFVD--GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAK-SQVLA  390 (741)
T ss_dssp             SSSCE-EEEE--EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTE-EEEEE
T ss_pred             CCceE-EEEe--ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCE-EEEEE
Confidence            33222 2233  344455544332   44577777665  233333 4445556677887 6667888888887 77665


Q ss_pred             CC-CCcEEEEEecCCCcccEEEEEeCCCCCEEEEEe----CCCeEEEEEceecc
Q 014977          246 TV-DGTRLQEVRRGVDRAEIYSIALSPNVQWLAVAS----DKGTVHIFSLRVRV  294 (415)
Q Consensus       246 ~~-~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s----~dg~i~vwd~~~~~  294 (415)
                      +. +++....+... ..+.+..+.++|+++.|+...    ..++|++||+.+++
T Consensus       391 ~~~~g~~~~~l~~~-~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          391 FDLDGKPAGAVSLP-GIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             EETTSCEEEECBCS-SSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             EeCCCCceeeccCC-CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            43 46666666532 356789999999988666332    34789999998765

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.39  E-value=8.9e-11  Score=119.43  Aligned_cols=234  Identities=9%  Similarity=-0.043  Sum_probs=146.5

Q ss_pred             eCCCCEEEEEe-CC---cEEEEEccCC-----ceeEEEe---c-cCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEE
Q 014977           53 NQDYGCFAAGT-SC---GFRIYNCEPF-----KETFRRD---L-KSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIW  119 (415)
Q Consensus        53 sp~g~~la~g~-d~---~v~iw~~~~~-----~~~~~~~---~-~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vw  119 (415)
                      +|+|++++... ++   .-.||..+..     +......   + .++...+..+.|+||+..++.+..+.......|++|
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~  194 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV  194 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence            48999988766 33   3567766432     2211111   1 123346778999999987766543210011469999


Q ss_pred             ECCCCCEEEEEEccCceeEEEEcCCeEEEE---eC--------------CeEEEEEcCCcee--eeEEeccCCCcceEEE
Q 014977          120 DDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LE--------------HKIYVYSFVDLKL--LHQIETLANLRGLCCL  180 (415)
Q Consensus       120 d~~~~~~~~~~~~~~~i~~l~~~~~~~~~~---~d--------------~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~  180 (415)
                      |+.+++.+........+..++|+|| +.++   .+              ..|++|++.+++.  ...+.....+.....+
T Consensus       195 dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~  273 (741)
T 1yr2_A          195 GVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGA  273 (741)
T ss_dssp             ETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEE
T ss_pred             ECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEE
Confidence            9999988665333333467899999 7666   22              2499999977653  2233333333346677


Q ss_pred             ecCCCceEEEEeCCc----cCeEEEEEcCCc--c-eEEEecCccceEEEEeCCCCCEEEEEeC----CCcEEEEEECCCC
Q 014977          181 SHHSSTSVLACPGLQ----RGQVRIEHFGLN--M-IKLINAHDSHIACFTLTLDGLLLATAST----RGTLIRIFNTVDG  249 (415)
Q Consensus       181 ~~~~~~~~l~~~g~~----dg~v~i~~~~~~--~-~~~~~~~~~~i~~l~~sp~g~~l~s~s~----dg~~I~vwd~~~~  249 (415)
                      .+++++++|++....    ...|++++....  . ...+..+...+.... +|+|+.|+..+.    ++. |.+||+.++
T Consensus       274 ~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~-l~~~d~~~~  351 (741)
T 1yr2_A          274 SVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKK-IVRVDLSGS  351 (741)
T ss_dssp             EECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCE-EEEEECSSS
T ss_pred             EECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCE-EEEEeCCCC
Confidence            788888887765422    337888776554  4 566666665555554 488988877765    456 999999875


Q ss_pred             -cEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEce
Q 014977          250 -TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR  291 (415)
Q Consensus       250 -~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~  291 (415)
                       .....+..+ +...+..++|+ ++.++++...|+..+||.++
T Consensus       352 ~~~~~~l~~~-~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~  392 (741)
T 1yr2_A          352 TPRFDTVVPE-SKDNLESVGIA-GNRLFASYIHDAKSQVLAFD  392 (741)
T ss_dssp             SCEEEEEECC-CSSEEEEEEEE-BTEEEEEEEETTEEEEEEEE
T ss_pred             ccccEEEecC-CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence             233344332 44467778887 66778888899988888766

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.36  E-value=1.4e-10  Score=106.80  Aligned_cols=235  Identities=10%  Similarity=-0.032  Sum_probs=150.8

Q ss_pred             EEEEeCCCCEEEEEe-----------CCcEEEEEccCCceeEEEeccCC-----CeeEEEEeeeCCeEEEEecCCCCCCC
Q 014977           49 SVSWNQDYGCFAAGT-----------SCGFRIYNCEPFKETFRRDLKSG-----GFRIVEMLFRCNILALVGAGDNSQYP  112 (415)
Q Consensus        49 ~l~~sp~g~~la~g~-----------d~~v~iw~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~s~~~d~~~~  112 (415)
                      .++++|||++++++.           ++.|.+||..+.+......+..+     ......+.+++++..+..+...   .
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~---~  158 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS---P  158 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS---S
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcC---C
Confidence            499999999887654           56799999998776655444221     1234457789988755544321   1


Q ss_pred             CCeEEEEECCCCCEEEEEEccCceeEEEEcCCe--EEEE--eCCeEEEEEcCC-ceeeeEEeccC----CCcce-EEEec
Q 014977          113 PTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDR--IVVV--LEHKIYVYSFVD-LKLLHQIETLA----NLRGL-CCLSH  182 (415)
Q Consensus       113 ~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~--~~~~--~d~~i~iwd~~~-~~~~~~~~~~~----~~~~~-~~~~~  182 (415)
                      ++.|.++|+.+++.+.++...+.   ..+.|.+  .++.  .||++.+.++.+ ++.........    .++.. ..+. 
T Consensus       159 ~~~VsVID~~t~~vv~tI~v~g~---~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~-  234 (386)
T 3sjl_D          159 APAVGVVDLEGKAFKRMLDVPDC---YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYS-  234 (386)
T ss_dssp             SCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEE-
T ss_pred             CCeEEEEECCCCcEEEEEECCCc---ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeE-
Confidence            28999999999999999875432   1122322  2222  688888888865 55432211111    11110 1222 


Q ss_pred             CCCceEEEEeCCccCeEEEEEcCCcceE---EEe----------cCccceEEEEeCCCCCEEEEEeC----------CCc
Q 014977          183 HSSTSVLACPGLQRGQVRIEHFGLNMIK---LIN----------AHDSHIACFTLTLDGLLLATAST----------RGT  239 (415)
Q Consensus       183 ~~~~~~l~~~g~~dg~v~i~~~~~~~~~---~~~----------~~~~~i~~l~~sp~g~~l~s~s~----------dg~  239 (415)
                      .+++++++. . .+|.|++.+..+....   .+.          ........++++++++.|+....          ...
T Consensus       235 ~~dG~~~~v-s-~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~  312 (386)
T 3sjl_D          235 QKAGRLVWP-T-YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRF  312 (386)
T ss_dssp             TTTTEEEEE-B-TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEE
T ss_pred             cCCCcEEEE-e-CCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCE
Confidence            245655443 3 4788998776544322   221          01223345778999988877643          135


Q ss_pred             EEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCC-EEEEE-eCCCeEEEEEceecccC
Q 014977          240 LIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQ-WLAVA-SDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       240 ~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~-~l~s~-s~dg~i~vwd~~~~~~~  296 (415)
                       |.++|+.+++.+..+..   ...+++|++++|++ +|++. ..++.|.++|..+++..
T Consensus       313 -V~viD~~t~kv~~~i~v---g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~  367 (386)
T 3sjl_D          313 -VVVLDAKTGERLAKFEM---GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEEL  367 (386)
T ss_dssp             -EEEEETTTCCEEEEEEE---EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred             -EEEEECCCCeEEEEEEC---CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEE
Confidence             99999999999999885   34688999999997 66665 45899999999998864

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.36  E-value=2.1e-09  Score=98.08  Aligned_cols=218  Identities=9%  Similarity=0.049  Sum_probs=145.0

Q ss_pred             CceEEEEEeCCCCE-EEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECC
Q 014977           45 IELISVSWNQDYGC-FAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH  122 (415)
Q Consensus        45 ~~V~~l~~sp~g~~-la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~  122 (415)
                      ....+..|+|++.. ++++. ++.|..|+.++.... ...+   ...+.++.+.+++.++++..       ..|.+||..
T Consensus        49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~---~~~v~~i~~~~dg~l~v~~~-------~gl~~~d~~  117 (326)
T 2ghs_A           49 LLGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHAL---PFMGSALAKISDSKQLIASD-------DGLFLRDTA  117 (326)
T ss_dssp             SBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEEC---SSCEEEEEEEETTEEEEEET-------TEEEEEETT
T ss_pred             CCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEEC---CCcceEEEEeCCCeEEEEEC-------CCEEEEECC
Confidence            34578899998554 45555 889999998865432 2222   34577888999988877753       459999998


Q ss_pred             CCCEEEEEEc-----cCceeEEEEcCCeEEEE-e-C-------CeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceE
Q 014977          123 QSRCIGEFAF-----RSDVRSVKLSRDRIVVV-L-E-------HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSV  188 (415)
Q Consensus       123 ~~~~~~~~~~-----~~~i~~l~~~~~~~~~~-~-d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (415)
                      +++.......     ...+.++.++++|.+.+ . +       +.|+.++  +++...... ...  ....+.+++++..
T Consensus       118 ~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~-~~~--~~~~i~~s~dg~~  192 (326)
T 2ghs_A          118 TGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA-DIS--IPNSICFSPDGTT  192 (326)
T ss_dssp             TCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE-EES--SEEEEEECTTSCE
T ss_pred             CCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC-CCc--ccCCeEEcCCCCE
Confidence            8876443332     13588999999998777 2 1       4566666  454433222 211  2345666677766


Q ss_pred             EEEeCCccCeEEEEEcC---C-cc--eEEE---ecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCC
Q 014977          189 LACPGLQRGQVRIEHFG---L-NM--IKLI---NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGV  259 (415)
Q Consensus       189 l~~~g~~dg~v~i~~~~---~-~~--~~~~---~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~  259 (415)
                      ++++...++.|.+++..   + ..  ...+   .........++++++|.+.++...++. |.+||. +++.+..+..  
T Consensus       193 lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~-v~~~d~-~g~~~~~i~~--  268 (326)
T 2ghs_A          193 GYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGA-VDRYDT-DGNHIARYEV--  268 (326)
T ss_dssp             EEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTE-EEEECT-TCCEEEEEEC--
T ss_pred             EEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCE-EEEECC-CCCEEEEEEC--
Confidence            65555567888887753   3 21  1222   223456778999999998777766778 999998 6887777775  


Q ss_pred             CcccEEEEEeC-CCCCEEEEEeCC
Q 014977          260 DRAEIYSIALS-PNVQWLAVASDK  282 (415)
Q Consensus       260 ~~~~v~~l~~s-pdg~~l~s~s~d  282 (415)
                      ....+.+++|+ ++++.|++++..
T Consensus       269 ~~~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          269 PGKQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             SCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             CCCCcEEEEEecCCCCEEEEEecC
Confidence            44569999998 888877655443

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.33  E-value=3.1e-09  Score=95.08  Aligned_cols=232  Identities=9%  Similarity=-0.047  Sum_probs=155.9

Q ss_pred             CCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEEC
Q 014977           43 DEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD  121 (415)
Q Consensus        43 h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~  121 (415)
                      +...+.++++.++|.++++.. ++.|..|+.+ .+. ....+......+..+.+.+++.++++...+     +.|..+|.
T Consensus        60 ~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-----~~i~~~~~  132 (300)
T 2qc5_A           60 PDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF-TEYPLPQPDSGPYGITEGLNGDIWFTQLNG-----DRIGKLTA  132 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECSTTCEEEEETTT-----TEEEEECT
T ss_pred             CCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe-EEecCCCCCCCCccceECCCCCEEEEccCC-----CeEEEECC
Confidence            346789999999999887776 7889999877 332 233332344667888888888777776544     88999997


Q ss_pred             CCCCEEEEEE---ccCceeEEEEcCCeEEEE-e--CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCc
Q 014977          122 HQSRCIGEFA---FRSDVRSVKLSRDRIVVV-L--EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ  195 (415)
Q Consensus       122 ~~~~~~~~~~---~~~~i~~l~~~~~~~~~~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  195 (415)
                      . ++.. .+.   ....+.++++.+++.+.+ .  ++.|..||. +++... +...........+..++++.+.++ ...
T Consensus       133 ~-g~~~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~-~~~  207 (300)
T 2qc5_A          133 D-GTIY-EYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFV-EIM  207 (300)
T ss_dssp             T-SCEE-EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEE-ETT
T ss_pred             C-CCEE-EccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEE-ccC
Confidence            6 6554 332   346788999999887666 2  678999998 555443 332222234566777777766654 334


Q ss_pred             cCeEEEEEcCCcceEE-EecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCC
Q 014977          196 RGQVRIEHFGLNMIKL-INAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQ  274 (415)
Q Consensus       196 dg~v~i~~~~~~~~~~-~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~  274 (415)
                      .+.|.+++..+..... +..+...+.+++++++|++.++...++. |..||. +++.. .+........+.+++++++|+
T Consensus       208 ~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~-i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~  284 (300)
T 2qc5_A          208 GNKIGRITTTGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQ-IGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGS  284 (300)
T ss_dssp             TTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTE-EEEECT-TSCEE-EEECCSTTCCCCCEEECTTSC
T ss_pred             CCEEEEEcCCCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCe-EEEECC-CCcEE-EEECCccCCccceeEeCCCCC
Confidence            6678877765443332 2234566889999999997776666788 999998 55543 333221334688999999998


Q ss_pred             EEEEEeCCCeEEEEEce
Q 014977          275 WLAVASDKGTVHIFSLR  291 (415)
Q Consensus       275 ~l~s~s~dg~i~vwd~~  291 (415)
                      +.++.. . .|..++.+
T Consensus       285 l~v~~~-~-~i~~~~p~  299 (300)
T 2qc5_A          285 VWFALK-C-KIGKLNLN  299 (300)
T ss_dssp             EEEECS-S-EEEEEEEC
T ss_pred             EEEEcc-C-ceEEeCCC
Confidence            665544 4 67777653

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.31  E-value=5.4e-09  Score=95.29  Aligned_cols=189  Identities=9%  Similarity=-0.097  Sum_probs=123.8

Q ss_pred             EEEeeeCC-eEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEE
Q 014977           91 VEMLFRCN-ILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQI  168 (415)
Q Consensus        91 ~~~~~~~~-~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~  168 (415)
                      ....|+++ +.++++...+     +.|..||..+++. ..+.....+.++.+++++.+++ .+..|++||..+++.....
T Consensus        52 egp~~~~~~~~l~~~d~~~-----~~i~~~d~~~~~~-~~~~~~~~v~~i~~~~dg~l~v~~~~gl~~~d~~~g~~~~~~  125 (326)
T 2ghs_A           52 EGPTFDPASGTAWWFNILE-----RELHELHLASGRK-TVHALPFMGSALAKISDSKQLIASDDGLFLRDTATGVLTLHA  125 (326)
T ss_dssp             EEEEEETTTTEEEEEEGGG-----TEEEEEETTTTEE-EEEECSSCEEEEEEEETTEEEEEETTEEEEEETTTCCEEEEE
T ss_pred             cCCeEeCCCCEEEEEECCC-----CEEEEEECCCCcE-EEEECCCcceEEEEeCCCeEEEEECCCEEEEECCCCcEEEEe
Confidence            34567774 4555555444     8999999877654 3455667899999999998877 6677999999877654322


Q ss_pred             ecc--CCCcceEEEecCCCceEEEEeCC-----ccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEe-CCCcE
Q 014977          169 ETL--ANLRGLCCLSHHSSTSVLACPGL-----QRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATAS-TRGTL  240 (415)
Q Consensus       169 ~~~--~~~~~~~~~~~~~~~~~l~~~g~-----~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s-~dg~~  240 (415)
                      ...  .....+..+..++++.+++.+..     ..+.|..++ .+ .+..+..+......++|+|+|+.|+.+. .++. 
T Consensus       126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g-~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~-  202 (326)
T 2ghs_A          126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KG-KVTKLFADISIPNSICFSPDGTTGYFVDTKVNR-  202 (326)
T ss_dssp             CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TT-EEEEEEEEESSEEEEEECTTSCEEEEEETTTCE-
T ss_pred             eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CC-cEEEeeCCCcccCCeEEcCCCCEEEEEECCCCE-
Confidence            211  11124566777888876654321     123454444 43 3333433445567899999998776554 4677 


Q ss_pred             EEEEECC--CC-cE-----EEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEc
Q 014977          241 IRIFNTV--DG-TR-----LQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSL  290 (415)
Q Consensus       241 I~vwd~~--~~-~~-----~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~  290 (415)
                      |.+||+.  ++ +.     ...+..  ....+..++++++|.+.++...++.|.+|+.
T Consensus       203 I~~~d~~~~~Gl~~~~~~~~~~~~~--~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~  258 (326)
T 2ghs_A          203 LMRVPLDARTGLPTGKAEVFIDSTG--IKGGMDGSVCDAEGHIWNARWGEGAVDRYDT  258 (326)
T ss_dssp             EEEEEBCTTTCCBSSCCEEEEECTT--SSSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred             EEEEEcccccCCcccCceEEEECCC--CCCCCCeeEECCCCCEEEEEeCCCEEEEECC
Confidence            9999986  55 31     222221  2345788999999988777767788999987

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.30  E-value=3.4e-10  Score=106.03  Aligned_cols=229  Identities=12%  Similarity=0.010  Sum_probs=150.4

Q ss_pred             CCCCEEEEEe--C----CcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecC----------CCCCCCCCeEE
Q 014977           54 QDYGCFAAGT--S----CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAG----------DNSQYPPTKVI  117 (415)
Q Consensus        54 p~g~~la~g~--d----~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~----------~d~~~~~~~i~  117 (415)
                      ++++.+++..  +    +.|.++|..+.+.+.....  +...  .+.+++++..+..+.          .+     +.|.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~v--G~~P--gia~SpDgk~lyVan~~~~~~~~G~~~-----~~Vs  152 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDG--GFLP--HPVAAEDGSFFAQASTVFERIARGKRT-----DYVE  152 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE--CSSC--EEEECTTSSCEEEEEEEEEETTEEEEE-----EEEE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEEC--CCCC--ceEECCCCCEEEEEeccccccccCCCC-----CEEE
Confidence            5777777665  3    6899999998777665544  2333  688899886554443          23     7899


Q ss_pred             EEECCCCCEEEEEEcc--------CceeEEEEcCCeEEEE----e-CCeEEEEEcCCceeeeEEeccCC-------Ccce
Q 014977          118 IWDDHQSRCIGEFAFR--------SDVRSVKLSRDRIVVV----L-EHKIYVYSFVDLKLLHQIETLAN-------LRGL  177 (415)
Q Consensus       118 vwd~~~~~~~~~~~~~--------~~i~~l~~~~~~~~~~----~-d~~i~iwd~~~~~~~~~~~~~~~-------~~~~  177 (415)
                      ++|..+++.+.++...        .....+.++||++++.    . ++.|.+.|+.+++.+..+.....       ....
T Consensus       153 viD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~  232 (426)
T 3c75_H          153 VFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVF  232 (426)
T ss_dssp             EECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEE
T ss_pred             EEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEE
Confidence            9999999999988743        3456889999998776    2 57899999999998877764211       0001


Q ss_pred             EEEecCCCceEEEEeC------------------------------------CccCeEEEEEcCCcceEEE---ec----
Q 014977          178 CCLSHHSSTSVLACPG------------------------------------LQRGQVRIEHFGLNMIKLI---NA----  214 (415)
Q Consensus       178 ~~~~~~~~~~~l~~~g------------------------------------~~dg~v~i~~~~~~~~~~~---~~----  214 (415)
                      +.+.  +++.+++...                                    ...+.|.+.+.....+..+   ..    
T Consensus       233 v~~~--~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~  310 (426)
T 3c75_H          233 YMNC--RDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEA  310 (426)
T ss_dssp             EEEE--TTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTT
T ss_pred             EEEc--CCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccc
Confidence            1111  1222222111                                    1233444433322211111   00    


Q ss_pred             ------CccceEEEEeCCCCCEEEEEeC----------CCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCC-EEE
Q 014977          215 ------HDSHIACFTLTLDGLLLATAST----------RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQ-WLA  277 (415)
Q Consensus       215 ------~~~~i~~l~~sp~g~~l~s~s~----------dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~-~l~  277 (415)
                            .......++++|+++.+++...          .+. |.++|+.+.+.+..+..+   ....++.|+|||+ +++
T Consensus       311 ~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~-VsVID~~T~kvv~~I~vg---~~P~gia~spDg~~~ly  386 (426)
T 3c75_H          311 ERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRF-VVVLNAETGERINKIELG---HEIDSINVSQDAEPLLY  386 (426)
T ss_dssp             TGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEE-EEEEETTTCCEEEEEEEE---EEECEEEECCSSSCEEE
T ss_pred             ccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCE-EEEEECCCCeEEEEEECC---CCcCeEEEccCCCEEEE
Confidence                  0011123688999887776642          346 999999999999999752   3588999999999 888


Q ss_pred             EEe-CCCeEEEEEceecccCC
Q 014977          278 VAS-DKGTVHIFSLRVRVVGE  297 (415)
Q Consensus       278 s~s-~dg~i~vwd~~~~~~~~  297 (415)
                      +.. .++.|.|+|+.+++...
T Consensus       387 v~n~~s~~VsVID~~t~kvv~  407 (426)
T 3c75_H          387 ALSAGTQTLHIYDAATGEELR  407 (426)
T ss_dssp             EEETTTTEEEEEETTTCCEEE
T ss_pred             EEcCCCCeEEEEECCCCCEEE
Confidence            887 58999999999988653

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.30  E-value=2.4e-10  Score=115.27  Aligned_cols=242  Identities=10%  Similarity=0.041  Sum_probs=151.0

Q ss_pred             CCCCCceEEEEEeCCCCEEEEEe--C----CcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCC----
Q 014977           41 DVDEIELISVSWNQDYGCFAAGT--S----CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQ----  110 (415)
Q Consensus        41 ~~h~~~V~~l~~sp~g~~la~g~--d----~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~----  110 (415)
                      .+|...+..++|||||++||.+.  .    ..|++||+++++.... .+  .......+.|+ |+..|+....+..    
T Consensus       125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~--~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~  200 (693)
T 3iuj_A          125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PL--KDVKFSGISWL-GNEGFFYSSYDKPDGSE  200 (693)
T ss_dssp             TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EE--EEEESCCCEEE-TTTEEEEEESSCCC---
T ss_pred             CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-cc--CCceeccEEEe-CCCEEEEEEecCccccc
Confidence            44677899999999999999654  2    3589999998664322 22  11112345677 6644444333210    


Q ss_pred             ----CCCCeEEEEECCCCCE--EEEEEc----cCceeEEEEcCCeEEEE---e----CCeEEEEEcCCce-eeeEEeccC
Q 014977          111 ----YPPTKVIIWDDHQSRC--IGEFAF----RSDVRSVKLSRDRIVVV---L----EHKIYVYSFVDLK-LLHQIETLA  172 (415)
Q Consensus       111 ----~~~~~i~vwd~~~~~~--~~~~~~----~~~i~~l~~~~~~~~~~---~----d~~i~iwd~~~~~-~~~~~~~~~  172 (415)
                          .....|++|++.+++.  ...+..    ...+..+.++||+++++   .    .+.|+++|+.++. ....+..+.
T Consensus       201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~  280 (693)
T 3iuj_A          201 LSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDL  280 (693)
T ss_dssp             ----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSS
T ss_pred             ccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCC
Confidence                1235699999887653  333332    23467899999999886   1    2589999997763 344454444


Q ss_pred             CCcceEEEecCCCceEEEEeCCcc---CeEEEEEcCCcc---eEEEecCccceEEEEeCCCCCEEEEEeCCC---cEEEE
Q 014977          173 NLRGLCCLSHHSSTSVLACPGLQR---GQVRIEHFGLNM---IKLINAHDSHIACFTLTLDGLLLATASTRG---TLIRI  243 (415)
Q Consensus       173 ~~~~~~~~~~~~~~~~l~~~g~~d---g~v~i~~~~~~~---~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg---~~I~v  243 (415)
                      .... ..+.++++ .+++. ...+   +.|..++.....   .+.+..|...+.  .|+++++.|+....++   . |++
T Consensus       281 ~~~~-~~~~~~g~-~l~~~-t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~-l~~  354 (693)
T 3iuj_A          281 DADV-SLVDNKGS-TLYLL-TNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATAR-VEQ  354 (693)
T ss_dssp             SSCE-EEEEEETT-EEEEE-ECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEE-EEE
T ss_pred             CceE-EEEeccCC-EEEEE-ECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeE-EEE
Confidence            3222 22444433 33333 3333   567767765533   356666766665  8899998877665544   5 889


Q ss_pred             EECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCC----CeEEEEEceecc
Q 014977          244 FNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK----GTVHIFSLRVRV  294 (415)
Q Consensus       244 wd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d----g~i~vwd~~~~~  294 (415)
                      ||+. +.....+... ..+.+..+.+++++..|+....+    ++|+.||+.+++
T Consensus       355 ~d~~-g~~~~~l~~p-~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          355 FDYE-GKRVREVALP-GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             ECTT-SCEEEEECCS-SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred             EECC-CCeeEEeecC-CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence            9986 4444555432 34567888889988877665544    789999987765

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.30  E-value=8.6e-09  Score=95.64  Aligned_cols=232  Identities=6%  Similarity=-0.120  Sum_probs=141.1

Q ss_pred             EeCCCCEEEEEe---CC---cEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCC-----CCCCCCeEEEEE
Q 014977           52 WNQDYGCFAAGT---SC---GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDN-----SQYPPTKVIIWD  120 (415)
Q Consensus        52 ~sp~g~~la~g~---d~---~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----~~~~~~~i~vwd  120 (415)
                      ..|+++++.+..   .+   .|.+||..+++.+..  +..+.. . .+.++|++..+..+...     ....++.|.+||
T Consensus        28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~--i~~g~~-p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD  103 (373)
T 2mad_H           28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH--VNGGFL-P-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFD  103 (373)
T ss_pred             CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEE--ecCCCC-C-CeEECCCCCEEEEEeccccccccCCCCCeEEEEE
Confidence            346777665543   11   789999988665433  323333 3 88899998766655420     000127899999


Q ss_pred             CCCCCEEEEEEcc--------CceeEEEEcCCeEEEE----e-CCeEEEEEcCCceeeeE-EeccCCCcceEEEecCCCc
Q 014977          121 DHQSRCIGEFAFR--------SDVRSVKLSRDRIVVV----L-EHKIYVYSFVDLKLLHQ-IETLANLRGLCCLSHHSST  186 (415)
Q Consensus       121 ~~~~~~~~~~~~~--------~~i~~l~~~~~~~~~~----~-d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  186 (415)
                      ..+.+.+..+...        .....+.++|||+++.    . ++.|.++| .+++.+.. +....    ...+.+.+..
T Consensus       104 ~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~  178 (373)
T 2mad_H          104 PVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPS  178 (373)
T ss_pred             CCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCc
Confidence            9999888877632        3456899999998877    2 47899999 99988877 54322    2334444444


Q ss_pred             eEEEEeCCccCeEEEEEcCCcceEEEe-----cCccce-EEEEeCCCCCEEEEEeCCCcEEEEEECCCCc--EEEEEecC
Q 014977          187 SVLACPGLQRGQVRIEHFGLNMIKLIN-----AHDSHI-ACFTLTLDGLLLATASTRGTLIRIFNTVDGT--RLQEVRRG  258 (415)
Q Consensus       187 ~~l~~~g~~dg~v~i~~~~~~~~~~~~-----~~~~~i-~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~--~~~~~~~~  258 (415)
                      .+++  .+.||.+.+++..++......     ....++ ....+.+++..++..+..+. +.+.|+..+.  .+..+...
T Consensus       179 ~~~~--~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-v~vid~~~~~~~v~~~~~~~  255 (373)
T 2mad_H          179 TFYL--LCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGK-ILQADISAAGATNKAPIDAL  255 (373)
T ss_pred             eEEE--EcCCCCEEEEECCCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCce-EEEEeccCCcceEeeeeeec
Confidence            4443  335777776555444432221     111221 23456666655444456777 9999987653  22222210


Q ss_pred             --------CCcccEEEEEeCCCCCEEEEEeC----------CCeEEEEEceeccc
Q 014977          259 --------VDRAEIYSIALSPNVQWLAVASD----------KGTVHIFSLRVRVV  295 (415)
Q Consensus       259 --------~~~~~v~~l~~spdg~~l~s~s~----------dg~i~vwd~~~~~~  295 (415)
                              ........+.++||++.|+++..          .+.|.++|+.+++.
T Consensus       256 ~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~v  310 (373)
T 2mad_H          256 SGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT  310 (373)
T ss_pred             CCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEE
Confidence                    01123445788999998887654          35799999888774

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.28  E-value=4.3e-09  Score=97.65  Aligned_cols=227  Identities=12%  Similarity=0.092  Sum_probs=147.4

Q ss_pred             CCCCEEEEEe--CCcEEEEEccCC--ceeEEEecc-------CCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECC
Q 014977           54 QDYGCFAAGT--SCGFRIYNCEPF--KETFRRDLK-------SGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH  122 (415)
Q Consensus        54 p~g~~la~g~--d~~v~iw~~~~~--~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~  122 (415)
                      +++++|++.+  ++.|.|+|+.+.  +......+.       .+......+...|++.++...+.......+.|.++|.+
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~  172 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHY  172 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEECC
Confidence            8899988877  899999999743  323333331       12224455666788844433222111133789999999


Q ss_pred             CCCEEEEEEcc----CceeEEEEcCCeEEEE-e---------------------CCeEEEEEcCCceeeeEEeccCCCcc
Q 014977          123 QSRCIGEFAFR----SDVRSVKLSRDRIVVV-L---------------------EHKIYVYSFVDLKLLHQIETLANLRG  176 (415)
Q Consensus       123 ~~~~~~~~~~~----~~i~~l~~~~~~~~~~-~---------------------d~~i~iwd~~~~~~~~~~~~~~~~~~  176 (415)
                      +++.+.++...    ..-..+.|+|+++.++ .                     +.+|.+||+.+++.+.++........
T Consensus       173 T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~  252 (462)
T 2ece_A          173 SFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRM  252 (462)
T ss_dssp             TCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEE
T ss_pred             CCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCc
Confidence            99999988722    2244688899988776 3                     58999999999988888876422112


Q ss_pred             e--EEEecCCCceEEEEeCC-----ccCeEEEEEcCCcc---eEEE--ecC----------------ccceEEEEeCCCC
Q 014977          177 L--CCLSHHSSTSVLACPGL-----QRGQVRIEHFGLNM---IKLI--NAH----------------DSHIACFTLTLDG  228 (415)
Q Consensus       177 ~--~~~~~~~~~~~l~~~g~-----~dg~v~i~~~~~~~---~~~~--~~~----------------~~~i~~l~~sp~g  228 (415)
                      .  +.+.++|+++++.+++.     .+++|.+|..+...   .+.+  ...                ......|.+++||
T Consensus       253 P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DG  332 (462)
T 2ece_A          253 ALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDD  332 (462)
T ss_dssp             EEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTS
T ss_pred             cceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCC
Confidence            2  34566888877766555     66778764333221   1111  110                1346789999999


Q ss_pred             CEEEEEeCCCcEEEEEECCC---CcEEEEEecCCC------------cccEEEEEeCCCCCEEEEEe
Q 014977          229 LLLATASTRGTLIRIFNTVD---GTRLQEVRRGVD------------RAEIYSIALSPNVQWLAVAS  280 (415)
Q Consensus       229 ~~l~s~s~dg~~I~vwd~~~---~~~~~~~~~~~~------------~~~v~~l~~spdg~~l~s~s  280 (415)
                      ++|.++......|.+||+..   .+.+..+..+..            .+....++++|||++|+++.
T Consensus       333 rfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          333 KFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            99988876443399999853   355555554211            01357899999999999888

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.27  E-value=3e-09  Score=95.95  Aligned_cols=232  Identities=9%  Similarity=0.005  Sum_probs=149.5

Q ss_pred             CCccCCCCCCceEEEEEeCCCCE-EEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCC
Q 014977           36 QTAFSDVDEIELISVSWNQDYGC-FAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPP  113 (415)
Q Consensus        36 ~~~~~~~h~~~V~~l~~sp~g~~-la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~  113 (415)
                      ................|+|+|+. ++++. ++.|..|+... +. ..  +......+..+.+++++.++++...+     
T Consensus        36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g-~~-~~--~~~~~~~~~gl~~d~dG~l~v~~~~~-----  106 (305)
T 3dr2_A           36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG-TV-DV--LLDATAFTNGNAVDAQQRLVHCEHGR-----  106 (305)
T ss_dssp             CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS-CE-EE--EEESCSCEEEEEECTTSCEEEEETTT-----
T ss_pred             ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC-CE-EE--EeCCCCccceeeECCCCCEEEEECCC-----
Confidence            33444555667789999999994 45555 88899998743 32 21  21344557788899999887776554     


Q ss_pred             CeEEEEECCCCCEEEEEEc-----cCceeEEEEcCCeEEEEeC--------------------CeEEEEEcCCceeeeEE
Q 014977          114 TKVIIWDDHQSRCIGEFAF-----RSDVRSVKLSRDRIVVVLE--------------------HKIYVYSFVDLKLLHQI  168 (415)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~~-----~~~i~~l~~~~~~~~~~~d--------------------~~i~iwd~~~~~~~~~~  168 (415)
                      +.|.+|+.. ++.......     ...+.++.+.++|.+.+.|                    +.|+.||..+++.....
T Consensus       107 ~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~  185 (305)
T 3dr2_A          107 RAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA  185 (305)
T ss_dssp             TEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE
T ss_pred             CEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe
Confidence            789999975 654332221     2346789999999888732                    46788887666554333


Q ss_pred             eccCCCcceEEEecCCCceEEEEeCCc-----cCeEEEEEcCCcceE---EE-ecCccceEEEEeCCCCCEEEEEeCCCc
Q 014977          169 ETLANLRGLCCLSHHSSTSVLACPGLQ-----RGQVRIEHFGLNMIK---LI-NAHDSHIACFTLTLDGLLLATASTRGT  239 (415)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~l~~~g~~-----dg~v~i~~~~~~~~~---~~-~~~~~~i~~l~~sp~g~~l~s~s~dg~  239 (415)
                        ...  ....+.+++++..|+++...     .+.|.+++.....+.   .+ .........++++++|++.+ +. .+.
T Consensus       186 --~~~--~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv-~~-~~g  259 (305)
T 3dr2_A          186 --DLD--HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS-SS-GTG  259 (305)
T ss_dssp             --EES--SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE-CC-SSE
T ss_pred             --cCC--CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE-ec-CCc
Confidence              222  33455666677656554433     267777665432221   11 11234456789999999544 44 345


Q ss_pred             EEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEE
Q 014977          240 LIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFS  289 (415)
Q Consensus       240 ~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd  289 (415)
                       |.+|+. +++.+..+...  . .+..++|+++++.|..++.++ ++.++
T Consensus       260 -v~~~~~-~g~~~~~~~~~--~-~~~~~~f~~d~~~L~it~~~~-l~~~~  303 (305)
T 3dr2_A          260 -VCVFDS-DGQLLGHIPTP--G-TASNCTFDQAQQRLFITGGPC-LWMLP  303 (305)
T ss_dssp             -EEEECT-TSCEEEEEECS--S-CCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred             -EEEECC-CCCEEEEEECC--C-ceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence             999997 68888787752  2 588999999999898888765 44444

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.22  E-value=7e-09  Score=95.23  Aligned_cols=236  Identities=7%  Similarity=-0.026  Sum_probs=148.2

Q ss_pred             CceEEEEEeCCCCEEEEEe---CCcEEEEEccCCceeEEE-----eccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977           45 IELISVSWNQDYGCFAAGT---SCGFRIYNCEPFKETFRR-----DLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (415)
Q Consensus        45 ~~V~~l~~sp~g~~la~g~---d~~v~iw~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i  116 (415)
                      ..+..++++++|+++++..   ++.++||.++. ......     ....+-..+..+.+++++.+++............|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~-g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQ-DGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEET-TEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECC-CCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            6789999999999998864   34367777763 322211     01123457888999998877665422000001789


Q ss_pred             EEEECCCCCEEEEEEcc-------CceeEEEEcCC-eEEEE--e----CCeEEEEEcCCceeeeEEeccCC---------
Q 014977          117 IIWDDHQSRCIGEFAFR-------SDVRSVKLSRD-RIVVV--L----EHKIYVYSFVDLKLLHQIETLAN---------  173 (415)
Q Consensus       117 ~vwd~~~~~~~~~~~~~-------~~i~~l~~~~~-~~~~~--~----d~~i~iwd~~~~~~~~~~~~~~~---------  173 (415)
                      .+||+.+++.+..+...       ..+..++++++ +...+  .    ++.|.+||+.+++....+..|..         
T Consensus        96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~  175 (343)
T 2qe8_A           96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV  175 (343)
T ss_dssp             EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred             EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence            99999999988777632       34689999974 44444  2    46899999988776554433110         


Q ss_pred             ------------------CcceEEEecCCCceEEEEeCCccCeEEEEEcC---C-c-----ce--EEEecCccceEEEEe
Q 014977          174 ------------------LRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG---L-N-----MI--KLINAHDSHIACFTL  224 (415)
Q Consensus       174 ------------------~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~---~-~-----~~--~~~~~~~~~i~~l~~  224 (415)
                                        ......+++++++..|+++......+...+..   . .     ..  ....++......+++
T Consensus       176 ~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~  255 (343)
T 2qe8_A          176 IDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISI  255 (343)
T ss_dssp             ETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEE
T ss_pred             ECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEE
Confidence                              01234566666776665543333344433221   0 0     00  012234445678999


Q ss_pred             CCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCC
Q 014977          225 TLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKG  283 (415)
Q Consensus       225 sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg  283 (415)
                      +++|.++++...++. |.+||..+++........ ....+.+++|.++++++++.+..+
T Consensus       256 d~~G~l~va~~~~~~-V~~~d~~~G~~~~~~~~~-~~~~p~~va~~~~g~l~v~~~~~~  312 (343)
T 2qe8_A          256 DKDHNIYVGDLAHSA-IGVITSADRAYKLLVTDE-KLSWTDSFNFGSDGYLYFDCNQLH  312 (343)
T ss_dssp             CTTCCEEEEEGGGTE-EEEEETTTTEEEEEEECG-GGSCEEEEEECTTSCEEEEECCGG
T ss_pred             CCCCCEEEEccCCCe-EEEEECCCCCEEEEEECC-ceecCCeeEECCCCcEEEEeCccc
Confidence            999999888888888 999998567644333321 234689999999998888776544

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.19  E-value=2.3e-08  Score=93.98  Aligned_cols=193  Identities=8%  Similarity=0.007  Sum_probs=125.2

Q ss_pred             eEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE---eCC--eEEEEEcCCce
Q 014977           89 RIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEH--KIYVYSFVDLK  163 (415)
Q Consensus        89 ~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~---~d~--~i~iwd~~~~~  163 (415)
                      ....+++++++.++++...+     +.|++||..+++............ ++|++++..++   .++  .|++|+...+.
T Consensus       132 ~P~~la~d~~g~lyv~d~~~-----~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~  205 (409)
T 3hrp_A          132 YMWGIAAVGNNTVLAYQRDD-----PRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGW  205 (409)
T ss_dssp             CEEEEEECSTTEEEEEETTT-----TEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred             CceEEEEeCCCCEEEEecCC-----CcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCc
Confidence            46778888988888887665     899999988877665555433444 99999987555   223  89999986654


Q ss_pred             eeeEE---ec-cCCCcceEEEecCC-CceEEEEeCCccCeEEEEEcCCcceEEEe-----cCccce--EEEEeCCC-CCE
Q 014977          164 LLHQI---ET-LANLRGLCCLSHHS-STSVLACPGLQRGQVRIEHFGLNMIKLIN-----AHDSHI--ACFTLTLD-GLL  230 (415)
Q Consensus       164 ~~~~~---~~-~~~~~~~~~~~~~~-~~~~l~~~g~~dg~v~i~~~~~~~~~~~~-----~~~~~i--~~l~~sp~-g~~  230 (415)
                      ....+   .. ...  ....++.++ ++.++ + +..++.|+.++........+.     ++...-  ..++|+|+ +.+
T Consensus       206 ~~~~~g~~~~~~~~--~p~~iav~p~~g~ly-v-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~l  281 (409)
T 3hrp_A          206 APTRIGQLGSTFSG--KIGAVALDETEEWLY-F-VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNF  281 (409)
T ss_dssp             CEEEEEECCTTSCS--CCCBCEECTTSSEEE-E-ECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEE
T ss_pred             eeEEeeeccchhcC--CcEEEEEeCCCCeEE-E-EECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEE
Confidence            43333   11 222  233444555 34444 3 345788888887765544441     111222  38999995 555


Q ss_pred             EEEEeCCCcEEEEEECCCCcEEEEEecCC-------------CcccEEEEEeCCCCCEEEEEe-CCCeEEEEEceecc
Q 014977          231 LATASTRGTLIRIFNTVDGTRLQEVRRGV-------------DRAEIYSIALSPNVQWLAVAS-DKGTVHIFSLRVRV  294 (415)
Q Consensus       231 l~s~s~dg~~I~vwd~~~~~~~~~~~~~~-------------~~~~v~~l~~spdg~~l~s~s-~dg~i~vwd~~~~~  294 (415)
                      +++-..++. |+.|+.. ++ +..+.+..             .-.....++++++|+++++-+ .++.|+.|++.+++
T Consensus       282 yv~d~~~~~-I~~~~~~-g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~  356 (409)
T 3hrp_A          282 YMSDQNLSS-VYKITPD-GE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY  356 (409)
T ss_dssp             EEEETTTTE-EEEECTT-CC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE
T ss_pred             EEEeCCCCE-EEEEecC-CC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE
Confidence            555566777 9999874 44 33333311             013478999999999777777 78899999976654

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.18  E-value=8.5e-10  Score=101.94  Aligned_cols=168  Identities=10%  Similarity=0.046  Sum_probs=122.4

Q ss_pred             ceEEEEEeCCCCEEEEEeCCcEEEEEccCCc-----------eeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCC
Q 014977           46 ELISVSWNQDYGCFAAGTSCGFRIYNCEPFK-----------ETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPT  114 (415)
Q Consensus        46 ~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~  114 (415)
                      .++.+++++...+|++|+...+.+|+++...           ......   ... +..+.|  ++..|+.+ .+     +
T Consensus        39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~---lp~-V~~l~f--d~~~L~v~-~~-----~  106 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKE---IPD-VIFVCF--HGDQVLVS-TR-----N  106 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEE---CTT-EEEEEE--ETTEEEEE-ES-----S
T ss_pred             cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEee---CCC-eeEEEE--CCCEEEEE-cC-----C
Confidence            6999999999999999996678889976433           112222   233 888888  55555555 54     9


Q ss_pred             eEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEe
Q 014977          115 KVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP  192 (415)
Q Consensus       115 ~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  192 (415)
                      .|++||+.+........ +...+.++.+.+....++ .||.|.+||+.+++... +   ..  .+.+++|+++|.  +. 
T Consensus       107 ~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~-~---~~--~Vs~v~WSpkG~--~v-  177 (388)
T 1xip_A          107 ALYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ-L---AQ--NVTSFDVTNSQL--AV-  177 (388)
T ss_dssp             EEEEEESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE-E---EE--SEEEEEECSSEE--EE-
T ss_pred             cEEEEEchhhhccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcccc-c---cC--CceEEEEcCCce--EE-
Confidence            99999988766544444 777888888877653334 79999999998877643 2   12  577888888883  33 


Q ss_pred             CCccCeEEEEEcCCcc---eEEE------e---cCccceEEEEeCCCCCEEEEE
Q 014977          193 GLQRGQVRIEHFGLNM---IKLI------N---AHDSHIACFTLTLDGLLLATA  234 (415)
Q Consensus       193 g~~dg~v~i~~~~~~~---~~~~------~---~~~~~i~~l~~sp~g~~l~s~  234 (415)
                      |..||++++|...+..   ...+      .   +|...|.+|.|.+++.+|++-
T Consensus       178 g~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          178 LLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             EEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence            5579999998877766   3445      2   377889999999999988863

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.15  E-value=8.2e-10  Score=102.05  Aligned_cols=172  Identities=15%  Similarity=0.128  Sum_probs=120.5

Q ss_pred             eEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCC-----------EEEEEEccCceeEEEEcCCeEEEE--eCCeEE
Q 014977           89 RIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR-----------CIGEFAFRSDVRSVKLSRDRIVVV--LEHKIY  155 (415)
Q Consensus        89 ~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~-----------~~~~~~~~~~i~~l~~~~~~~~~~--~d~~i~  155 (415)
                      .+..++.++...++++++.      ..+.+|++...+           ......+.. |+.++|  ++.+++  .++.|+
T Consensus        39 ~~nlLais~~~gll~a~~~------~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~~~~~l~  109 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASG------SKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVSTRNALY  109 (388)
T ss_dssp             CCBCEEEETTTTEEEEEET------TEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEEESSEEE
T ss_pred             cccEEEEcCCCCEEEEeCC------CEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEEcCCcEE
Confidence            3556777777666666665      577779854322           223445666 999999  555555  899999


Q ss_pred             EEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEe
Q 014977          156 VYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATAS  235 (415)
Q Consensus       156 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s  235 (415)
                      +||+.+.........+..+  +..+.+.+..  +++ +..||.+.+|+........   +...|.+++|||+|  ++.|.
T Consensus       110 v~dv~sl~~~~~~~~~~~~--v~~i~~~~p~--~av-~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~  179 (388)
T 1xip_A          110 SLDLEELSEFRTVTSFEKP--VFQLKNVNNT--LVI-LNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLL  179 (388)
T ss_dssp             EEESSSTTCEEEEEECSSC--EEEEEECSSE--EEE-EETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEE
T ss_pred             EEEchhhhccCccceeecc--eeeEEecCCC--EEE-EECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEE
Confidence            9999776655555555443  4455555443  443 4579999999987554433   45689999999999  67899


Q ss_pred             CCCcEEEEEECCCCcE--EEEEec-------CCCcccEEEEEeCCCCCEEEEEe
Q 014977          236 TRGTLIRIFNTVDGTR--LQEVRR-------GVDRAEIYSIALSPNVQWLAVAS  280 (415)
Q Consensus       236 ~dg~~I~vwd~~~~~~--~~~~~~-------~~~~~~v~~l~~spdg~~l~s~s  280 (415)
                      .||. +++|+...++.  ..++..       ..|...|.++.|.+++.++++-.
T Consensus       180 ~dg~-i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          180 KDRS-FQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             TTSC-EEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             cCCc-EEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence            9999 99999877765  556621       01456899999999999988633

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.15  E-value=7.6e-09  Score=95.24  Aligned_cols=230  Identities=11%  Similarity=0.025  Sum_probs=143.2

Q ss_pred             EEEeCCCCEEEEEe------CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecC----------CCCCCCC
Q 014977           50 VSWNQDYGCFAAGT------SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAG----------DNSQYPP  113 (415)
Q Consensus        50 l~~sp~g~~la~g~------d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~----------~d~~~~~  113 (415)
                      ....|+++.+.+..      ++.|.++|..+.+.+.....  +...  .+.++|++..+..+.          .+     
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~v--G~~P--~va~spDG~~lyVan~~~~r~~~G~~~-----  108 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG--GFLP--NPVVADDGSFIAHASTVFSRIARGERT-----  108 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEE--CSSC--EEEECTTSSCEEEEEEEEEETTEEEEE-----
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEEC--CCCC--cEEECCCCCEEEEEcccccccccCCCC-----
Confidence            34568898888775      35799999988776555443  3333  388899886554432          23     


Q ss_pred             CeEEEEECCCCCEEEEEEcc--------CceeEEEEcCCeEEEE---e--CCeEEEEEcCCceeeeEEeccCCCcceEEE
Q 014977          114 TKVIIWDDHQSRCIGEFAFR--------SDVRSVKLSRDRIVVV---L--EHKIYVYSFVDLKLLHQIETLANLRGLCCL  180 (415)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~~~--------~~i~~l~~~~~~~~~~---~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  180 (415)
                      +.|.+||..+++.+.++...        .....+.++|||+++.   .  ++.|.++|+.+++.+.++....    +..+
T Consensus       109 ~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g----~~~~  184 (386)
T 3sjl_D          109 DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD----CYHI  184 (386)
T ss_dssp             EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEE
T ss_pred             CEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC----ccee
Confidence            68999999999999988732        2567799999998766   2  5789999999999998886432    1222


Q ss_pred             ecCCCceEEEEeCCccCeEEEEEcC--CcceEEEecC----ccceE-EEEe-CCCCCEEEEEeCCCcEEEEEECCCCc--
Q 014977          181 SHHSSTSVLACPGLQRGQVRIEHFG--LNMIKLINAH----DSHIA-CFTL-TLDGLLLATASTRGTLIRIFNTVDGT--  250 (415)
Q Consensus       181 ~~~~~~~~l~~~g~~dg~v~i~~~~--~~~~~~~~~~----~~~i~-~l~~-sp~g~~l~s~s~dg~~I~vwd~~~~~--  250 (415)
                      .+.....+++.  +.||.+.+.+..  ++.......+    ..++. ...| .++|++++ .+.+|. |++.|+.++.  
T Consensus       185 ~P~g~~~~~~~--~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~-V~v~d~~~~~~~  260 (386)
T 3sjl_D          185 FPTAPDTFFMH--CRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGK-IHQIDLSSGDAK  260 (386)
T ss_dssp             EEEETTEEEEE--ETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSE-EEEEECTTSSCE
T ss_pred             ecCCCceeEEE--CCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCE-EEEEECCCCcce
Confidence            33333233332  245655553332  2222111111    12221 2355 46886555 555788 9999997654  


Q ss_pred             EEEEEe--------cCCCcccEEEEEeCCCCCEEEEEeC----------CCeEEEEEceecccC
Q 014977          251 RLQEVR--------RGVDRAEIYSIALSPNVQWLAVASD----------KGTVHIFSLRVRVVG  296 (415)
Q Consensus       251 ~~~~~~--------~~~~~~~v~~l~~spdg~~l~s~s~----------dg~i~vwd~~~~~~~  296 (415)
                      .+..+.        .+........++++++++.|+....          .++|.++|+++++..
T Consensus       261 v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~  324 (386)
T 3sjl_D          261 FLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL  324 (386)
T ss_dssp             ECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE
T ss_pred             eecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEE
Confidence            333332        1111223345777999998887653          247999999888743

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.14  E-value=1.9e-08  Score=100.97  Aligned_cols=237  Identities=11%  Similarity=0.012  Sum_probs=145.1

Q ss_pred             CCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC---CeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE
Q 014977           56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC---NILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA  131 (415)
Q Consensus        56 g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~  131 (415)
                      +..+++++ ++.|..+|.++++.+..............+...|   ++.+++..+....-.++.|..||..+|+.+..+.
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  200 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY  200 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence            45677777 9999999999988877765420110000111111   4555554332000023899999999999998876


Q ss_pred             cc--C------------------------------ceeEEEEcCCeEEEE---eCC-------------------eEEEE
Q 014977          132 FR--S------------------------------DVRSVKLSRDRIVVV---LEH-------------------KIYVY  157 (415)
Q Consensus       132 ~~--~------------------------------~i~~l~~~~~~~~~~---~d~-------------------~i~iw  157 (415)
                      ..  .                              ....+.+++++.++.   .++                   .|..+
T Consensus       201 ~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~Al  280 (689)
T 1yiq_A          201 TVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAV  280 (689)
T ss_dssp             SSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEE
T ss_pred             ccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence            21  0                              012467777544444   333                   49999


Q ss_pred             EcCCceeeeEEeccCCC---------cceEEEecCCCceEEEEeCCccCeEEEEEcC-CcceEEEecCc-----------
Q 014977          158 SFVDLKLLHQIETLANL---------RGLCCLSHHSSTSVLACPGLQRGQVRIEHFG-LNMIKLINAHD-----------  216 (415)
Q Consensus       158 d~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~-~~~~~~~~~~~-----------  216 (415)
                      |..+|+.+..++.....         .....+..+....-+++.++.+|.+++++.. ++.+.......           
T Consensus       281 D~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~  360 (689)
T 1yiq_A          281 NADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKT  360 (689)
T ss_dssp             ETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTT
T ss_pred             EccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccC
Confidence            99999999887653221         1112222222211233347789999996654 44432221100           


Q ss_pred             ----------------------------cceEEEEeCCCCCEEEEEeC--------------------------------
Q 014977          217 ----------------------------SHIACFTLTLDGLLLATAST--------------------------------  236 (415)
Q Consensus       217 ----------------------------~~i~~l~~sp~g~~l~s~s~--------------------------------  236 (415)
                                                  ..-..++++|+..++++...                                
T Consensus       361 ~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p  440 (689)
T 1yiq_A          361 GRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMP  440 (689)
T ss_dssp             TEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCC
T ss_pred             CCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccC
Confidence                                        00113688888887776532                                


Q ss_pred             -------------CCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977          237 -------------RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       237 -------------dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                                   +|. |+.||+.+|+.+..+..+   .++..-.+...+.+++.++.||.|+.||.++++..
T Consensus       441 ~~~~~~~~~~~~~~g~-l~A~D~~tG~~~W~~~~~---~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~l  509 (689)
T 1yiq_A          441 EGAEGLLEMAKSWSGK-LIAWDPVKQQAAWEVPYV---TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKL  509 (689)
T ss_dssp             SSHHHHHHHHTTCEEE-EEEEETTTTEEEEEEEES---SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             cccccCCCCCCCccee-EEEEECCCCCeEeEccCC---CCccCccceECCCEEEEECCCCcEEEEECCCCccc
Confidence                         367 999999999999888752   22333355567889999999999999999999853

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.13  E-value=2.5e-08  Score=89.91  Aligned_cols=193  Identities=11%  Similarity=-0.004  Sum_probs=118.5

Q ss_pred             CCeeEEEEeeeCCeE-EEEecCCCCCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE-e--CCeEEEEEcC
Q 014977           86 GGFRIVEMLFRCNIL-ALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-L--EHKIYVYSFV  160 (415)
Q Consensus        86 ~~~~~~~~~~~~~~~-~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~-~--d~~i~iwd~~  160 (415)
                      +........|++++. ++++...+     +.|..|+. +++. ..+. ....+..+.+++++++++ .  ++.|.+|+..
T Consensus        43 ~~~~~egp~~~~~g~~l~~~d~~~-----~~i~~~~~-~g~~-~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~  115 (305)
T 3dr2_A           43 QATWSEGPAWWEAQRTLVWSDLVG-----RRVLGWRE-DGTV-DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD  115 (305)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEETTT-----TEEEEEET-TSCE-EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             CCcCccCCeEeCCCCEEEEEECCC-----CEEEEEeC-CCCE-EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC
Confidence            334455677888775 55565555     89999997 5653 3343 567789999999998877 2  4689999975


Q ss_pred             CceeeeEEeccCC--CcceEEEecCCCceEEEEe---CCc-------------cCeEEEEEcCCcceEEEecCccceEEE
Q 014977          161 DLKLLHQIETLAN--LRGLCCLSHHSSTSVLACP---GLQ-------------RGQVRIEHFGLNMIKLINAHDSHIACF  222 (415)
Q Consensus       161 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~---g~~-------------dg~v~i~~~~~~~~~~~~~~~~~i~~l  222 (415)
                       ++..........  ......+..++++.++++-   |..             .+.|..++.....+..+. .......+
T Consensus       116 -g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl  193 (305)
T 3dr2_A          116 -GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGL  193 (305)
T ss_dssp             -SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEE
T ss_pred             -CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcce
Confidence             543222211110  0123345666777766531   211             234555555333344443 44566889


Q ss_pred             EeCCCCCEEEEEeCC------CcEEEEEECCCCcE--EEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEce
Q 014977          223 TLTLDGLLLATASTR------GTLIRIFNTVDGTR--LQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR  291 (415)
Q Consensus       223 ~~sp~g~~l~s~s~d------g~~I~vwd~~~~~~--~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~  291 (415)
                      +|+|+|+.|+.+...      +. |++|++..+..  ...+... .......++++++|++. +++.+| |.+|+.+
T Consensus       194 ~~spdg~~lyv~~~~~~~~~~~~-i~~~~~~~~~l~~~~~~~~~-~~~~pdgi~~d~~G~lw-v~~~~g-v~~~~~~  266 (305)
T 3dr2_A          194 AFSPDEQTLYVSQTPEQGHGSVE-ITAFAWRDGALHDRRHFASV-PDGLPDGFCVDRGGWLW-SSSGTG-VCVFDSD  266 (305)
T ss_dssp             EECTTSSEEEEEECCC---CCCE-EEEEEEETTEEEEEEEEECC-SSSCCCSEEECTTSCEE-ECCSSE-EEEECTT
T ss_pred             EEcCCCCEEEEEecCCcCCCCCE-EEEEEecCCCccCCeEEEEC-CCCCCCeEEECCCCCEE-EecCCc-EEEECCC
Confidence            999999988777665      67 99999876541  1122111 22345678999999944 444554 8888863

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.10  E-value=3.9e-09  Score=106.46  Aligned_cols=201  Identities=7%  Similarity=0.046  Sum_probs=125.3

Q ss_pred             CCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE---eC-----------
Q 014977           86 GGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LE-----------  151 (415)
Q Consensus        86 ~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~---~d-----------  151 (415)
                      +...+..+.|+||+..++-+.+...-....|++||+.+++.+...........++|+ |++.++   .+           
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~  205 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSART  205 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------C
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccC
Confidence            445677889999998777322110001268999999999976542222224567899 887666   23           


Q ss_pred             --CeEEEEEcCCcee--eeEEeccC-CCcceEEEecCCCceEEEEeCC---ccCeEEEEEcCCc--ceEEEecCccceEE
Q 014977          152 --HKIYVYSFVDLKL--LHQIETLA-NLRGLCCLSHHSSTSVLACPGL---QRGQVRIEHFGLN--MIKLINAHDSHIAC  221 (415)
Q Consensus       152 --~~i~iwd~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~l~~~g~---~dg~v~i~~~~~~--~~~~~~~~~~~i~~  221 (415)
                        ..|++|++.+...  ...+.... .+.....+.+++++++|+++..   ....|++++....  ....+..+......
T Consensus       206 ~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~  285 (693)
T 3iuj_A          206 DQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVS  285 (693)
T ss_dssp             CCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEE
T ss_pred             CCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEE
Confidence              2499999977543  22233222 2334566777888887765432   2347888776543  56667777666655


Q ss_pred             EEeCCCCCEEE-EEeCC---CcEEEEEECCCCcE--EEEEecCCCcccEEEEEeCCCCCEEEEEeCCC---eEEEEEcee
Q 014977          222 FTLTLDGLLLA-TASTR---GTLIRIFNTVDGTR--LQEVRRGVDRAEIYSIALSPNVQWLAVASDKG---TVHIFSLRV  292 (415)
Q Consensus       222 l~~sp~g~~l~-s~s~d---g~~I~vwd~~~~~~--~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg---~i~vwd~~~  292 (415)
                      . ++++|..|+ ....+   +. |.++|+.++..  ...+..  +...+.  .|++++++|+....++   .|++|++..
T Consensus       286 ~-~~~~g~~l~~~t~~~~~~~~-l~~~d~~~~~~~~~~~l~~--~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g  359 (693)
T 3iuj_A          286 L-VDNKGSTLYLLTNRDAPNRR-LVTVDAANPGPAHWRDLIP--ERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEG  359 (693)
T ss_dssp             E-EEEETTEEEEEECTTCTTCE-EEEEETTSCCGGGCEEEEC--CCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTS
T ss_pred             E-EeccCCEEEEEECCCCCCCE-EEEEeCCCCCccccEEEec--CCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCC
Confidence            5 566666554 44433   46 99999987654  234544  333343  8899999887666544   688888774


Q ss_pred             c
Q 014977          293 R  293 (415)
Q Consensus       293 ~  293 (415)
                      +
T Consensus       360 ~  360 (693)
T 3iuj_A          360 K  360 (693)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.10  E-value=1.1e-07  Score=88.22  Aligned_cols=219  Identities=10%  Similarity=0.031  Sum_probs=132.1

Q ss_pred             CCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccC
Q 014977           56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRS  134 (415)
Q Consensus        56 g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~  134 (415)
                      +..+.+++ ++.|..+|.++++......+......  ..... ++.+++.. .+     +.|..+|..+|+.+..+....
T Consensus       103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~--~p~~~-~~~v~v~~-~~-----g~l~~~d~~tG~~~W~~~~~~  173 (376)
T 3q7m_A          103 GGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALS--RPVVS-DGLVLIHT-SN-----GQLQALNEADGAVKWTVNLDM  173 (376)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCS--CCEEE-TTEEEEEC-TT-----SEEEEEETTTCCEEEEEECCC
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEc--CCEEE-CCEEEEEc-CC-----CeEEEEECCCCcEEEEEeCCC
Confidence            44566666 88999999998887776655322111  11122 44444443 33     899999999999998887543


Q ss_pred             ce------eEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCcc--------e-EEEecCCCceEEEEeCCccC
Q 014977          135 DV------RSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRG--------L-CCLSHHSSTSVLACPGLQRG  197 (415)
Q Consensus       135 ~i------~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~l~~~g~~dg  197 (415)
                      .+      ...... ++.+++  .++.+..+|..+++.+...........        + ...... ++. +.+ ++.++
T Consensus       174 ~~~~~~~~~~~~~~-~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~-v~~-~~~~g  249 (376)
T 3q7m_A          174 PSLSLRGESAPTTA-FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV-NGV-VFA-LAYNG  249 (376)
T ss_dssp             -----CCCCCCEEE-TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEE-TTE-EEE-ECTTS
T ss_pred             CceeecCCCCcEEE-CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEE-CCE-EEE-EecCc
Confidence            33      222333 444454  578999999999988877653321000        0 000011 232 333 44677


Q ss_pred             eEEEEEc-CCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEE
Q 014977          198 QVRIEHF-GLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWL  276 (415)
Q Consensus       198 ~v~i~~~-~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l  276 (415)
                      .+..++. +++.+....  ......+..  ++..|+.++.++. |..+|..+|+.+...... ....+.....  .+..|
T Consensus       250 ~l~~~d~~tG~~~w~~~--~~~~~~~~~--~~~~l~~~~~~g~-l~~~d~~tG~~~w~~~~~-~~~~~~~~~~--~~~~l  321 (376)
T 3q7m_A          250 NLTALDLRSGQIMWKRE--LGSVNDFIV--DGNRIYLVDQNDR-VMALTIDGGVTLWTQSDL-LHRLLTSPVL--YNGNL  321 (376)
T ss_dssp             CEEEEETTTCCEEEEEC--CCCEEEEEE--ETTEEEEEETTCC-EEEEETTTCCEEEEECTT-TTSCCCCCEE--ETTEE
T ss_pred             EEEEEECCCCcEEeecc--CCCCCCceE--ECCEEEEEcCCCe-EEEEECCCCcEEEeeccc-CCCcccCCEE--ECCEE
Confidence            7777665 455444433  222334443  3567888888999 999999999988776521 1112222222  35678


Q ss_pred             EEEeCCCeEEEEEceeccc
Q 014977          277 AVASDKGTVHIFSLRVRVV  295 (415)
Q Consensus       277 ~s~s~dg~i~vwd~~~~~~  295 (415)
                      +.++.+|.|+++|.++++.
T Consensus       322 ~v~~~~g~l~~~d~~tG~~  340 (376)
T 3q7m_A          322 VVGDSEGYLHWINVEDGRF  340 (376)
T ss_dssp             EEECTTSEEEEEETTTCCE
T ss_pred             EEEeCCCeEEEEECCCCcE
Confidence            8899999999999988874

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.10  E-value=2.6e-08  Score=99.83  Aligned_cols=235  Identities=10%  Similarity=0.003  Sum_probs=148.2

Q ss_pred             CCEEEEEe-CCcEEEEEccCCceeEEEecc-CCC--eeEE-EEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEE
Q 014977           56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLK-SGG--FRIV-EMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEF  130 (415)
Q Consensus        56 g~~la~g~-d~~v~iw~~~~~~~~~~~~~~-~~~--~~~~-~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~  130 (415)
                      +..+++++ ++.+..+|..+++.+...... ...  ..+. ..... ++.+++.......-.++.|..+|..+|+.+..+
T Consensus       128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~-~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~  206 (677)
T 1kb0_A          128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVF-KGKVIIGNGGAEYGVRGYITAYDAETGERKWRW  206 (677)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEE-CCEEEEEecccccCCCCEEEEEECCCCcEEEEe
Confidence            45677777 999999999998888776652 100  1111 11112 445555443200001389999999999999988


Q ss_pred             EccCce---------------------------------eEEEEcCCeEEEE---eC-------------------CeEE
Q 014977          131 AFRSDV---------------------------------RSVKLSRDRIVVV---LE-------------------HKIY  155 (415)
Q Consensus       131 ~~~~~i---------------------------------~~l~~~~~~~~~~---~d-------------------~~i~  155 (415)
                      ......                                 ..+.+++++..+.   .+                   +.|.
T Consensus       207 ~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~  286 (677)
T 1kb0_A          207 FSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIV  286 (677)
T ss_dssp             ESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred             ccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEE
Confidence            731111                                 2467777654444   22                   2599


Q ss_pred             EEEcCCceeeeEEeccCCC---------cceEEEecCCCc-eEEEEeCCccCeEEEEEc-CCcceEEEecCc--------
Q 014977          156 VYSFVDLKLLHQIETLANL---------RGLCCLSHHSST-SVLACPGLQRGQVRIEHF-GLNMIKLINAHD--------  216 (415)
Q Consensus       156 iwd~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~-~~l~~~g~~dg~v~i~~~-~~~~~~~~~~~~--------  216 (415)
                      .+|..+++.+..++...+.         ..+.....+... ..++ .++.+|.+++++. +++.+..+....        
T Consensus       287 AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~-~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d  365 (677)
T 1kb0_A          287 ALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVIL-HAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYD  365 (677)
T ss_dssp             EECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEE-ECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEC
T ss_pred             EEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEE-EECCCCEEEEEECCCCCEeccccccccCcccccC
Confidence            9999999998887653221         112222222211 3444 4778999999665 455554443211        


Q ss_pred             ---cce------------------------EEEEeCCCCCEEEEEeCC--------------------------------
Q 014977          217 ---SHI------------------------ACFTLTLDGLLLATASTR--------------------------------  237 (415)
Q Consensus       217 ---~~i------------------------~~l~~sp~g~~l~s~s~d--------------------------------  237 (415)
                         .++                        ..++++|++.++++...+                                
T Consensus       366 ~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~  445 (677)
T 1kb0_A          366 KHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKF  445 (677)
T ss_dssp             TTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEE
T ss_pred             CCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccc
Confidence               011                        156889988888775431                                


Q ss_pred             -----------CcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977          238 -----------GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       238 -----------g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                                 +. |..||+.+++.+..+..   ..++....+..++.+++.++.||.+++||.++++..
T Consensus       446 ~~~~~~~~~~~g~-l~A~D~~tG~~~W~~~~---~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~l  511 (677)
T 1kb0_A          446 FNAEPPKSKPFGR-LLAWDPVAQKAAWSVEH---VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKL  511 (677)
T ss_dssp             ECSSCCCSCCEEE-EEEEETTTTEEEEEEEE---SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             cccccCCCCCccE-EEEEeCCCCcEEeecCC---CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCcee
Confidence                       67 99999999999888874   233445556677888899999999999999999854

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.06  E-value=7.2e-09  Score=94.22  Aligned_cols=219  Identities=13%  Similarity=0.009  Sum_probs=133.1

Q ss_pred             ceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCC
Q 014977           46 ELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR  125 (415)
Q Consensus        46 ~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~  125 (415)
                      .+.++...++|. |.+++++ +..||. +.+.......  ........... ++.++++.. +     +.|..+|.. ++
T Consensus        61 ~~~~~~~~~~g~-l~v~t~~-l~~~d~-~g~~~~~~~~--~~~~~~~~~~~-~~~l~v~t~-~-----~~l~~~d~~-g~  127 (330)
T 3hxj_A           61 IECRPSIGKDGT-IYFGSDK-VYAINP-DGTEKWRFDT--KKAIVSDFTIF-EDILYVTSM-D-----GHLYAINTD-GT  127 (330)
T ss_dssp             EEECCEETTTTE-ECCSSCE-EEEECC-CGGGGGGSCC-------CCEEEE-TTEEEEECT-T-----SEEEEECTT-SC
T ss_pred             cccceEEecCCc-EEEecCc-EEEECC-CCcEEEEEEC--CCCcccCceEE-CCEEEEEec-C-----CEEEEEcCC-CC
Confidence            345666666665 4445544 777775 3232222111  11111111222 555555433 3     889999988 88


Q ss_pred             EEEEEE-ccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEE
Q 014977          126 CIGEFA-FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIE  202 (415)
Q Consensus       126 ~~~~~~-~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~  202 (415)
                      ...... ....+.++...+++.+.+  .++.|..+|.. ++.+..+......  +..+..+.++.+.+.  +  +.+..+
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~--~~~~~~d~~g~l~v~--t--~~l~~~  200 (330)
T 3hxj_A          128 EKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAI--TSAASIGKDGTIYFG--S--DKVYAI  200 (330)
T ss_dssp             EEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCC--CSCCEECTTCCEEEE--S--SSEEEE
T ss_pred             EEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCc--eeeeEEcCCCEEEEE--e--CEEEEE
Confidence            777766 444566777887777766  46899999988 7777666544432  233444455555543  3  566666


Q ss_pred             EcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCC
Q 014977          203 HFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK  282 (415)
Q Consensus       203 ~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d  282 (415)
                      +.+++...........+.++...++|. |..++.++. |..+| .+++.+..+..  ....+..+.+.+++. |..++.+
T Consensus       201 d~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~g-l~~~~-~~g~~~~~~~~--~~~~~~~~~~~~~g~-l~v~t~~  274 (330)
T 3hxj_A          201 NPDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGH-LYAIN-PDGTEKWRFKT--GKRIESSPVIGNTDT-IYFGSYD  274 (330)
T ss_dssp             CTTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTE-EEEEC-TTSCEEEEEEC--SSCCCSCCEECTTSC-EEEECTT
T ss_pred             CCCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCe-EEEEC-CCCCEeEEeeC--CCCccccceEcCCCe-EEEecCC
Confidence            666666666665666788888888886 455666777 88887 46777766664  222334455665664 6678888


Q ss_pred             CeEEEEEc
Q 014977          283 GTVHIFSL  290 (415)
Q Consensus       283 g~i~vwd~  290 (415)
                      |.|..+|.
T Consensus       275 ggl~~~d~  282 (330)
T 3hxj_A          275 GHLYAINP  282 (330)
T ss_dssp             CEEEEECT
T ss_pred             CCEEEECC
Confidence            88998884

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.05  E-value=1.6e-08  Score=93.01  Aligned_cols=213  Identities=7%  Similarity=-0.067  Sum_probs=131.6

Q ss_pred             cEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecC----------CCCCCCCCeEEEEECCCCCEEEEEEcc--
Q 014977           66 GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAG----------DNSQYPPTKVIIWDDHQSRCIGEFAFR--  133 (415)
Q Consensus        66 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~----------~d~~~~~~~i~vwd~~~~~~~~~~~~~--  133 (415)
                      .|.++|.++.+.+-....  +...  .+.+++++..+..+.          .+     +.|.+||+.+++.+.++...  
T Consensus        47 ~vsvID~~t~~v~~~i~v--G~~P--~i~~spDg~~lyVan~~~~r~~~G~~~-----~~VsviD~~T~~vv~~I~v~~~  117 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLG--AFLS--LAVAGHSGSDFALASTSFARSAKGKRT-----DYVEVFDPVTFLPIADIELPDA  117 (368)
T ss_dssp             EEEEEETTTTEEEEEEEE--CTTC--EEEECTTSSCEEEEEEEETTTTSSSEE-----EEEEEECTTTCCEEEEEEETTS
T ss_pred             eEEEEECCCCeEEEEEeC--CCCC--ceEECCCCCEEEEEcccccccccCCCC-----CEEEEEECCCCCEEEEEECCCc
Confidence            788999998777665544  2223  688898875554443          23     78999999999999998743  


Q ss_pred             ------CceeEEEEcCCeEEEE--e---CCeEEE--EEcCCceeeeEEeccCCCcce------EEEecCCCc--------
Q 014977          134 ------SDVRSVKLSRDRIVVV--L---EHKIYV--YSFVDLKLLHQIETLANLRGL------CCLSHHSST--------  186 (415)
Q Consensus       134 ------~~i~~l~~~~~~~~~~--~---d~~i~i--wd~~~~~~~~~~~~~~~~~~~------~~~~~~~~~--------  186 (415)
                            .....+.++|||+++.  .   +..+.+  +|+.+   +..+..... ..+      .-+...+++        
T Consensus       118 ~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~-~~~~p~g~~~~~~~~~dg~~~~vd~~  193 (368)
T 1mda_H          118 PRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC-FHIHPGAAATHYLGSCPASLAASDLA  193 (368)
T ss_dssp             CSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC-CCCEEEETTEEECCCCTTSCEEEECC
T ss_pred             cccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc-eEEccCCCeEEEEEcCCCCEEEEECc
Confidence                  3467899999998776  2   457888  88765   233321100 000      000111111        


Q ss_pred             -----------------------------eEEEEeCCccCeEEEEEcCCcceEE---Eec-------Cc---cceEEEEe
Q 014977          187 -----------------------------SVLACPGLQRGQVRIEHFGLNMIKL---INA-------HD---SHIACFTL  224 (415)
Q Consensus       187 -----------------------------~~l~~~g~~dg~v~i~~~~~~~~~~---~~~-------~~---~~i~~l~~  224 (415)
                                                   ..++++. . +.|.+.+........   +..       +.   .....+++
T Consensus       194 ~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs-~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~  271 (368)
T 1mda_H          194 AAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV-A-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAK  271 (368)
T ss_dssp             SSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB-S-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEE
T ss_pred             cccccCCeEEEEeeeeeeCCCCccccccCCEEEEEc-C-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEE
Confidence                                         1112212 1 444443332211111   100       00   11122689


Q ss_pred             CCCCCEEEEEeC-C--------CcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCE-EEEEe-CCCeEEEEEceec
Q 014977          225 TLDGLLLATAST-R--------GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQW-LAVAS-DKGTVHIFSLRVR  293 (415)
Q Consensus       225 sp~g~~l~s~s~-d--------g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~-l~s~s-~dg~i~vwd~~~~  293 (415)
                      +|+|+.++.+.. +        +. +.++|+.+++.+..+..+   .....|+|+|||++ +++.. .+++|.++|+.++
T Consensus       272 s~dg~~lyV~~~~~~~~~~~~~~~-~~ViD~~t~~vv~~i~vg---~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~  347 (368)
T 1mda_H          272 LKNTDGIMILTVEHSRSCLAAAEN-TSSVTASVGQTSGPISNG---HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD  347 (368)
T ss_dssp             ETTTTEEEEEEEECSSCTTSCEEE-EEEEESSSCCEEECCEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEESSSC
T ss_pred             cCCCCEEEEEeccccCcccccCCC-EEEEECCCCeEEEEEECC---CCcceEEECCCCCEEEEEccCCCCeEEEEECCCC
Confidence            999998876543 2        35 679999999999888753   36889999999984 55666 5899999999998


Q ss_pred             ccCC
Q 014977          294 VVGE  297 (415)
Q Consensus       294 ~~~~  297 (415)
                      +...
T Consensus       348 kvv~  351 (368)
T 1mda_H          348 QDQS  351 (368)
T ss_dssp             EEEE
T ss_pred             cEEE
Confidence            8654

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.02  E-value=2.9e-07  Score=85.35  Aligned_cols=220  Identities=10%  Similarity=0.055  Sum_probs=135.3

Q ss_pred             CCEEEEEe-CCcEEEEEccCCceeEEEeccCC-------CeeE-EEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCE
Q 014977           56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSG-------GFRI-VEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRC  126 (415)
Q Consensus        56 g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~-------~~~~-~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~  126 (415)
                      +..+.+++ ++.|..+|.++++......+...       ...+ ...... ++.+++... +     +.|..+|..+|+.
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~~~-~-----g~l~a~d~~tG~~  125 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVS-GGHVYIGSE-K-----AQVYALNTSDGTV  125 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEE-TTEEEEEET-T-----SEEEEEETTTCCE
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEe-CCEEEEEcC-C-----CEEEEEECCCCCE
Confidence            45666677 88999999998887776655221       1222 223333 444444433 3     8999999999999


Q ss_pred             EEEEEccCcee-EEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCc-----ceEEEecCCCceEEEEeCCccCe
Q 014977          127 IGEFAFRSDVR-SVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLR-----GLCCLSHHSSTSVLACPGLQRGQ  198 (415)
Q Consensus       127 ~~~~~~~~~i~-~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~g~~dg~  198 (415)
                      +........+. ...+. ++.+++  .++.|+.+|..+++.+..+.......     ....+.   ++ .+++ +..++.
T Consensus       126 ~W~~~~~~~~~~~p~~~-~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~---~~-~v~~-g~~~g~  199 (376)
T 3q7m_A          126 AWQTKVAGEALSRPVVS-DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA---FG-AAVV-GGDNGR  199 (376)
T ss_dssp             EEEEECSSCCCSCCEEE-TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE---TT-EEEE-CCTTTE
T ss_pred             EEEEeCCCceEcCCEEE-CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE---CC-EEEE-EcCCCE
Confidence            98887443332 22333 444444  68899999999999887776533211     111111   23 3333 667888


Q ss_pred             EEEEEc-CCcceEEEecCccc----eE---EEEeCC--CCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEE
Q 014977          199 VRIEHF-GLNMIKLINAHDSH----IA---CFTLTL--DGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIA  268 (415)
Q Consensus       199 v~i~~~-~~~~~~~~~~~~~~----i~---~l~~sp--~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~  268 (415)
                      +..++. +++.+.........    +.   .+...|  .+..++.++.++. +..+|..+|+.+......    ....+.
T Consensus       200 l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~-l~~~d~~tG~~~w~~~~~----~~~~~~  274 (376)
T 3q7m_A          200 VSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGN-LTALDLRSGQIMWKRELG----SVNDFI  274 (376)
T ss_dssp             EEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSC-EEEEETTTCCEEEEECCC----CEEEEE
T ss_pred             EEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcE-EEEEECCCCcEEeeccCC----CCCCce
Confidence            887665 45555444322110    00   011111  2456777888999 999999999988776532    233444


Q ss_pred             eCCCCCEEEEEeCCCeEEEEEceeccc
Q 014977          269 LSPNVQWLAVASDKGTVHIFSLRVRVV  295 (415)
Q Consensus       269 ~spdg~~l~s~s~dg~i~vwd~~~~~~  295 (415)
                      .  ++..|+.++.++.|..+|.++++.
T Consensus       275 ~--~~~~l~~~~~~g~l~~~d~~tG~~  299 (376)
T 3q7m_A          275 V--DGNRIYLVDQNDRVMALTIDGGVT  299 (376)
T ss_dssp             E--ETTEEEEEETTCCEEEEETTTCCE
T ss_pred             E--ECCEEEEEcCCCeEEEEECCCCcE
Confidence            3  466788888899999999988874

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.99  E-value=1.8e-06  Score=80.22  Aligned_cols=191  Identities=12%  Similarity=0.071  Sum_probs=122.5

Q ss_pred             CCe-EEEEecCCCCCCCCCeEEEEECCCC----CEEEEEE--------ccCceeEEEEcCCeEEEE--eC------CeEE
Q 014977           97 CNI-LALVGAGDNSQYPPTKVIIWDDHQS----RCIGEFA--------FRSDVRSVKLSRDRIVVV--LE------HKIY  155 (415)
Q Consensus        97 ~~~-~~l~s~~~d~~~~~~~i~vwd~~~~----~~~~~~~--------~~~~i~~l~~~~~~~~~~--~d------~~i~  155 (415)
                      .+. .+++.+..+     +.|.|+|+.+.    +.++.++        .......+...|+|.++.  .+      +.|.
T Consensus        93 ~~r~~l~v~~l~s-----~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~  167 (462)
T 2ece_A           93 IERRFLIVPGLRS-----SRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGIL  167 (462)
T ss_dssp             CCSCEEEEEBTTT-----CCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEE
T ss_pred             ccCCEEEEccCCC-----CeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEE
Confidence            444 455566655     99999998765    6666663        112456788899994444  23      6899


Q ss_pred             EEEcCCceeeeEEeccCCCc-ceEEEecCCCceEEEEeC------------------CccCeEEEEEcCCc-ceEEEecC
Q 014977          156 VYSFVDLKLLHQIETLANLR-GLCCLSHHSSTSVLACPG------------------LQRGQVRIEHFGLN-MIKLINAH  215 (415)
Q Consensus       156 iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~g------------------~~dg~v~i~~~~~~-~~~~~~~~  215 (415)
                      ++|..+++.+..+.....+. ....+.+++++..++++.                  ....+|.+|+.... .+..+...
T Consensus       168 vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg  247 (462)
T 2ece_A          168 MLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLG  247 (462)
T ss_dssp             EECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESC
T ss_pred             EEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecC
Confidence            99999999998886443221 222344455666776642                  13678999887653 34455442


Q ss_pred             --ccceEEEEe--CCCCCEEEEEeC-----C-CcEEEEEECCCCcE--EEEEecCCC----------------cccEEEE
Q 014977          216 --DSHIACFTL--TLDGLLLATAST-----R-GTLIRIFNTVDGTR--LQEVRRGVD----------------RAEIYSI  267 (415)
Q Consensus       216 --~~~i~~l~~--sp~g~~l~s~s~-----d-g~~I~vwd~~~~~~--~~~~~~~~~----------------~~~v~~l  267 (415)
                        ......+.|  +|+|++++++++     . +. |.+|....++.  ...+.....                ......|
T Consensus       248 ~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~-V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I  326 (462)
T 2ece_A          248 EENRMALELRPLHDPTKLMGFINMVVSLKDLSSS-IWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDI  326 (462)
T ss_dssp             TTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEE-EEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCE
T ss_pred             CCCCccceeEeeECCCCCEEEEEEeeeccCCCce-EEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEE
Confidence              123345555  999999888775     4 45 88776655432  222211000                1346789


Q ss_pred             EeCCCCCEEEEEeC-CCeEEEEEceec
Q 014977          268 ALSPNVQWLAVASD-KGTVHIFSLRVR  293 (415)
Q Consensus       268 ~~spdg~~l~s~s~-dg~i~vwd~~~~  293 (415)
                      .+|+||++|.++.. .+.|.+||+...
T Consensus       327 ~lS~DGrfLYVSnrg~d~VavfdV~d~  353 (462)
T 2ece_A          327 DISLDDKFLYLSLWGIGEVRQYDISNP  353 (462)
T ss_dssp             EECTTSCEEEEEETTTTEEEEEECSST
T ss_pred             EECCCCCEEEEEeCCCCEEEEEEecCC
Confidence            99999999987765 679999999744

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.96  E-value=2.1e-06  Score=74.84  Aligned_cols=197  Identities=12%  Similarity=0.016  Sum_probs=135.8

Q ss_pred             eeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccC--ceeEEEEcCCeEEEE--eCCeEEEEEcCCce
Q 014977           88 FRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRS--DVRSVKLSRDRIVVV--LEHKIYVYSFVDLK  163 (415)
Q Consensus        88 ~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~--~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~  163 (415)
                      .....+.+++++.++++.+..   ..+.|.++|+.+++.+..+....  ....+++..+..+++  .++.+.++|..+++
T Consensus        21 ~f~~Gl~~~~dg~Lyvstg~~---~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~   97 (266)
T 2iwa_A           21 AFTQGLVYAENDTLFESTGLY---GRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLS   97 (266)
T ss_dssp             CCEEEEEECSTTEEEEEECST---TTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTE
T ss_pred             CCcccEEEeCCCeEEEECCCC---CCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCc
Confidence            345677888877777765531   12899999999999999887433  334567776655555  58999999999999


Q ss_pred             eeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcC-CcceEEEecCc--c---ceEEEEeCCCCCEEEEEeCC
Q 014977          164 LLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG-LNMIKLINAHD--S---HIACFTLTLDGLLLATASTR  237 (415)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~-~~~~~~~~~~~--~---~i~~l~~sp~g~~l~s~s~d  237 (415)
                      .+.++... .+ ....+++++..  ++++. .++.|.+.+.. .+.+..+....  .   .++.+.|. +|++.+....+
T Consensus        98 v~~~i~~g-~~-~g~glt~Dg~~--l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~  171 (266)
T 2iwa_A           98 NIKNFTHQ-MK-DGWGLATDGKI--LYGSD-GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQT  171 (266)
T ss_dssp             EEEEEECC-SS-SCCEEEECSSS--EEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTS
T ss_pred             EEEEEECC-CC-CeEEEEECCCE--EEEEC-CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCC
Confidence            99988654 12 23456666433  33333 46788886544 45555555322  1   35678887 77655555456


Q ss_pred             CcEEEEEECCCCcEEEEEecCCC-----------cccEEEEEeCCCCCEEE-EEeCCCeEEEEEceecc
Q 014977          238 GTLIRIFNTVDGTRLQEVRRGVD-----------RAEIYSIALSPNVQWLA-VASDKGTVHIFSLRVRV  294 (415)
Q Consensus       238 g~~I~vwd~~~~~~~~~~~~~~~-----------~~~v~~l~~spdg~~l~-s~s~dg~i~vwd~~~~~  294 (415)
                      +. |.+.|..+++.+..+.....           ......|+|+|+++.|+ ++...+.|.+.++....
T Consensus       172 ~~-V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~  239 (266)
T 2iwa_A          172 DC-IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR  239 (266)
T ss_dssp             SE-EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred             Ce-EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence            77 99999999999998874200           12568999999987554 56677889999988764

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.90  E-value=1.1e-07  Score=91.45  Aligned_cols=233  Identities=8%  Similarity=-0.007  Sum_probs=149.7

Q ss_pred             CCCCEEEEEe--CCcEEEEEccCCceeEEEeccCCCeeEEEEee-e-CCeEEEEecCCC-------------CCCCCCeE
Q 014977           54 QDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLF-R-CNILALVGAGDN-------------SQYPPTKV  116 (415)
Q Consensus        54 p~g~~la~g~--d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~l~s~~~d-------------~~~~~~~i  116 (415)
                      +||++|.+..  ++.|.+.|+++.+......+... .....+.+ . |++.++..++..             +...++.+
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g-~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v  177 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNA-KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  177 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSC-CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCC-CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence            4899998877  67799999998775554445322 33455555 3 665554444211             01123689


Q ss_pred             EEEECCCCCEEEEEEccCceeEEEEcCCeEEEE--e--C--------------C-----------------------eEE
Q 014977          117 IIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--L--E--------------H-----------------------KIY  155 (415)
Q Consensus       117 ~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~--d--------------~-----------------------~i~  155 (415)
                      .+.|.++.+.+.++.-.+....++++|+|++++  .  .              .                       .|.
T Consensus       178 tvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~  257 (595)
T 1fwx_A          178 TAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  257 (595)
T ss_dssp             EEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence            999999999999988655677888999887776  1  1              1                       255


Q ss_pred             EEEcCC--cee-eeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcc-------------eEEEecCccce
Q 014977          156 VYSFVD--LKL-LHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNM-------------IKLINAHDSHI  219 (415)
Q Consensus       156 iwd~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~-------------~~~~~~~~~~i  219 (415)
                      |.|..+  ++. +..+....   ....+.++|+++++++++..+.+|.+++.....             +..+. -....
T Consensus       258 VID~~~~~~~~~~~~Ipvg~---~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP  333 (595)
T 1fwx_A          258 VVDGRKEASSLFTRYIPIAN---NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGP  333 (595)
T ss_dssp             EEECSGGGCCSSEEEEEEES---SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCE
T ss_pred             EEeCcccCCceeEEEEecCC---CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCc
Confidence            555555  333 33443322   233455667788888888889999997776431             22222 23456


Q ss_pred             EEEEeCCCCCEEEEEeCCCcEEEEEECCC----------CcEEEEEecCCCcccE---EEEEeCCCCCEEEEEeC---CC
Q 014977          220 ACFTLTLDGLLLATASTRGTLIRIFNTVD----------GTRLQEVRRGVDRAEI---YSIALSPNVQWLAVASD---KG  283 (415)
Q Consensus       220 ~~l~~sp~g~~l~s~s~dg~~I~vwd~~~----------~~~~~~~~~~~~~~~v---~~l~~spdg~~l~s~s~---dg  283 (415)
                      ..++|+|+|....+.-.|+. |.+||+.+          .+.+.++..+...+..   .++.++|||++|+++..   |.
T Consensus       334 ~h~aF~~dG~aY~t~~ldsq-V~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr  412 (595)
T 1fwx_A          334 LHTAFDGRGNAYTSLFLDSQ-VVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDR  412 (595)
T ss_dssp             EEEEECTTSEEEEEETTTTE-EEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTS
T ss_pred             ceEEECCCCeEEEEEecCCc-EEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccc
Confidence            78999999944445566777 99999977          5677777763221111   12356899999998754   33


Q ss_pred             eE-----------EEEEceec
Q 014977          284 TV-----------HIFSLRVR  293 (415)
Q Consensus       284 ~i-----------~vwd~~~~  293 (415)
                       +           .++|+..+
T Consensus       413 -~~~~gp~~~~~~ql~dis~~  432 (595)
T 1fwx_A          413 -FLNVGPLKPENDQLIDISGD  432 (595)
T ss_dssp             -SCCCCSSCCEEEEEEECSSS
T ss_pred             -cccCCCCCCCcceEEEcCCC
Confidence             3           88998443

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.90  E-value=8e-07  Score=89.03  Aligned_cols=225  Identities=8%  Similarity=0.034  Sum_probs=131.8

Q ss_pred             CCEEEEEe-CCcEEEEEccCCceeEEEeccCCC---------eeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCC
Q 014977           56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGG---------FRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR  125 (415)
Q Consensus        56 g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~  125 (415)
                      +..+++++ ++.|.-+|..+++.+.+.......         .....+... ++.+++. ..+     +.|..+|..+|+
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~-~~~v~v~-~~d-----g~l~alD~~tG~  149 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW-KGKVYVG-AWD-----GRLIALDAATGK  149 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE-TTEEEEE-CTT-----SEEEEEETTTCC
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEE-CCEEEEE-cCC-----CEEEEEECCCCC
Confidence            34555556 888999999988888776552211         001112222 3344443 333     899999999999


Q ss_pred             EEEEEEcc------CceeE-EEEcCCeEEEE--e------CCeEEEEEcCCceeeeEEeccCCCc---------------
Q 014977          126 CIGEFAFR------SDVRS-VKLSRDRIVVV--L------EHKIYVYSFVDLKLLHQIETLANLR---------------  175 (415)
Q Consensus       126 ~~~~~~~~------~~i~~-l~~~~~~~~~~--~------d~~i~iwd~~~~~~~~~~~~~~~~~---------------  175 (415)
                      .+..+...      ..+.. ..+. ++.+++  .      ++.|+.||..+++.+..+.......               
T Consensus       150 ~~W~~~~~~~~~~~~~~~~~p~v~-~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~  228 (677)
T 1kb0_A          150 EVWHQNTFEGQKGSLTITGAPRVF-KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAART  228 (677)
T ss_dssp             EEEEEETTTTCCSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTT
T ss_pred             EEeeecCCcCcCcCcccccCcEEE-CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccc
Confidence            99988743      12221 1222 455555  2      6899999999999988776432210               


Q ss_pred             ---------------ceEEEecCCCceEEEEeCCccC-------------------eEEEEEc-CCcceEEEec--Cc--
Q 014977          176 ---------------GLCCLSHHSSTSVLACPGLQRG-------------------QVRIEHF-GLNMIKLINA--HD--  216 (415)
Q Consensus       176 ---------------~~~~~~~~~~~~~l~~~g~~dg-------------------~v~i~~~-~~~~~~~~~~--~~--  216 (415)
                                     ....++.++++..+++ +..++                   .|..++. +++.+..++.  |.  
T Consensus       229 w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~-~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~w  307 (677)
T 1kb0_A          229 WDPSGKWWEAGGGGTMWDSMTFDAELNTMYV-GTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNW  307 (677)
T ss_dssp             SCGGGCHHHHCEECCCCSCEEEETTTTEEEE-ECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCS
T ss_pred             ccccCceeEeCCCcccccceeEcCCCCEEEE-ECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccc
Confidence                           0012333444444443 33332                   3555443 4555555543  21  


Q ss_pred             -----cceEEEEeCCCC---CEEEEEeCCCcEEEEEECCCCcEEEEEecCCCc---------ccE---------------
Q 014977          217 -----SHIACFTLTLDG---LLLATASTRGTLIRIFNTVDGTRLQEVRRGVDR---------AEI---------------  264 (415)
Q Consensus       217 -----~~i~~l~~sp~g---~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~---------~~v---------------  264 (415)
                           .....+....+|   ..|+.++.+|. |+++|..+|+.+..+......         .++               
T Consensus       308 d~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~-l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~  386 (677)
T 1kb0_A          308 DYTSTQPMILADIKIAGKPRKVILHAPKNGF-FFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAV  386 (677)
T ss_dssp             CCCCCSCCEEEEEEETTEEEEEEEECCTTSE-EEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECS
T ss_pred             ccccCCCcEEEecccCCcEeeEEEEECCCCE-EEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEEC
Confidence                 112222333477   67899999999 999999999998877632100         011               


Q ss_pred             ---------EEEEeCCCCCEEEEEeCCCeEEEEEc
Q 014977          265 ---------YSIALSPNVQWLAVASDKGTVHIFSL  290 (415)
Q Consensus       265 ---------~~l~~spdg~~l~s~s~dg~i~vwd~  290 (415)
                               ..++|+|++.++++...+-...++..
T Consensus       387 P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~  421 (677)
T 1kb0_A          387 PGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDD  421 (677)
T ss_dssp             SCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEEC
T ss_pred             cCcccccCCCCceEcCCCCEEEEeChhcceeeecc
Confidence                     14678898888888776544444443

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.88  E-value=2e-06  Score=74.08  Aligned_cols=194  Identities=13%  Similarity=0.122  Sum_probs=129.2

Q ss_pred             CCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCce--eEEEEcCCeEEEE--eCCeEEEEEcC
Q 014977           85 SGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDV--RSVKLSRDRIVVV--LEHKIYVYSFV  160 (415)
Q Consensus        85 ~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i--~~l~~~~~~~~~~--~d~~i~iwd~~  160 (415)
                      ........+.|+ ++.++.+.+.+   ..+.|+++|+++++.+..+......  ..+.+..+..+++  .++.+.+||..
T Consensus        40 d~~~ftqGL~~~-~~~LyestG~~---g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~  115 (262)
T 3nol_A           40 DTKAFTEGFFYR-NGYFYESTGLN---GRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIR  115 (262)
T ss_dssp             CTTCEEEEEEEE-TTEEEEEEEET---TEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETT
T ss_pred             CCCcccceEEEE-CCEEEEECCCC---CCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECc
Confidence            334445667787 45666666654   1138999999999999998855554  3467766766666  59999999999


Q ss_pred             CceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcC-CcceEEEecC--c---cceEEEEeCCCCCEEEEE
Q 014977          161 DLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG-LNMIKLINAH--D---SHIACFTLTLDGLLLATA  234 (415)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~-~~~~~~~~~~--~---~~i~~l~~sp~g~~l~s~  234 (415)
                      +.+.+.++.....   ...++++.  ..|+.+. .++.|.+.+.. .+.+..+...  .   ..++.+.|. +|++.+..
T Consensus       116 t~~~~~ti~~~~e---G~glt~dg--~~L~~Sd-Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~  188 (262)
T 3nol_A          116 NLRQVRSFNYDGE---GWGLTHND--QYLIMSD-GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANV  188 (262)
T ss_dssp             TCCEEEEEECSSC---CCCEEECS--SCEEECC-SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred             cCcEEEEEECCCC---ceEEecCC--CEEEEEC-CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEE
Confidence            9999999976443   23444543  3444433 35678875544 5556655542  2   234557776 77655555


Q ss_pred             eCCCcEEEEEECCCCcEEEEEecCCC----------cccEEEEEeCCCCCEEEEEeCCCeEEEEEce
Q 014977          235 STRGTLIRIFNTVDGTRLQEVRRGVD----------RAEIYSIALSPNVQWLAVASDKGTVHIFSLR  291 (415)
Q Consensus       235 s~dg~~I~vwd~~~~~~~~~~~~~~~----------~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~  291 (415)
                      -.++. |.+.|.++|+.+..+....-          ....+.|+|+|+++.|++.+..= =++|.++
T Consensus       189 w~~~~-I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~W-p~~~ev~  253 (262)
T 3nol_A          189 WQTNK-IVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLW-PKVFEIT  253 (262)
T ss_dssp             TTSSE-EEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTC-SEEEEEE
T ss_pred             ccCCe-EEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCC-CceEEEE
Confidence            55677 99999999999988875211          13568999999988777666432 3445544

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.88  E-value=5.7e-06  Score=72.69  Aligned_cols=217  Identities=7%  Similarity=-0.087  Sum_probs=132.6

Q ss_pred             CceEEEEEeCCCCEEEEEe--CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCC-eEEEEecCCCCCCCCCeEEEEEC
Q 014977           45 IELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCN-ILALVGAGDNSQYPPTKVIIWDD  121 (415)
Q Consensus        45 ~~V~~l~~sp~g~~la~g~--d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~~~~~~i~vwd~  121 (415)
                      ..+..++|++++..|..+.  .+.|.+++.+......  .+.........++++++ +.++++....     +.|.++++
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~--~~~~~~~~p~~ia~d~~~~~lyv~d~~~-----~~I~~~~~  108 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT--IIRQDLGSPEGIALDHLGRTIFWTDSQL-----DRIEVAKM  108 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE--EECTTCCCEEEEEEETTTTEEEEEETTT-----TEEEEEET
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE--EEECCCCCccEEEEEecCCeEEEEECCC-----CEEEEEEc
Confidence            3567999999877666666  7889999987643221  12122345677888874 5666665544     89999997


Q ss_pred             CCCCEEEEEEc-cCceeEEEEcCC-eEEEE-e----CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCC
Q 014977          122 HQSRCIGEFAF-RSDVRSVKLSRD-RIVVV-L----EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL  194 (415)
Q Consensus       122 ~~~~~~~~~~~-~~~i~~l~~~~~-~~~~~-~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  194 (415)
                      ........... ......++++|+ +.+.+ .    .+.|..+++.. +....+.. ........++.++++..|.++..
T Consensus       109 ~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~-~~~~~P~gia~d~~~~~lyv~d~  186 (267)
T 1npe_A          109 DGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQ-DNLGLPNGLTFDAFSSQLCWVDA  186 (267)
T ss_dssp             TSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEEC-TTCSCEEEEEEETTTTEEEEEET
T ss_pred             CCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEE-CCCCCCcEEEEcCCCCEEEEEEC
Confidence            64433222222 256789999994 55444 2    36888888753 33333321 11123455666665445555555


Q ss_pred             ccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEe-CCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCC
Q 014977          195 QRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATAS-TRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNV  273 (415)
Q Consensus       195 ~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s-~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg  273 (415)
                      ..+.|...+..+.....+.........++..  +..|+.+. ..+. |.++|..+++.+..+..+ .......+++.|++
T Consensus       187 ~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~~~~~-v~~~d~~~g~~~~~i~~g-~~~~p~gi~~~~~~  262 (267)
T 1npe_A          187 GTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNS-VIAMDLAISKEMDTFHPH-KQTRLYGITIALSQ  262 (267)
T ss_dssp             TTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTE-EEEEETTTTEEEEEECCS-SCCCCCCEEEECSC
T ss_pred             CCCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEEECCCCe-EEEEeCCCCCceEEEccc-cccccceeeecCcc
Confidence            6778888777665444333223334566654  44555555 4567 999999999998888753 11246778888876


Q ss_pred             C
Q 014977          274 Q  274 (415)
Q Consensus       274 ~  274 (415)
                      .
T Consensus       263 ~  263 (267)
T 1npe_A          263 C  263 (267)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.87  E-value=3.5e-06  Score=74.02  Aligned_cols=228  Identities=9%  Similarity=-0.029  Sum_probs=133.3

Q ss_pred             CCEEEEEeCCcEEEEEccCCcee---EEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE
Q 014977           56 YGCFAAGTSCGFRIYNCEPFKET---FRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA  131 (415)
Q Consensus        56 g~~la~g~d~~v~iw~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~  131 (415)
                      |.+|..+..+.|+.++++.....   ....+.........+.+++ ++.++++....     +.|.++++..+.....+.
T Consensus         1 ~~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~-----~~I~~~~~~g~~~~~~~~   75 (267)
T 1npe_A            1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISE-----PSIGRASLHGGEPTTIIR   75 (267)
T ss_dssp             CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTT-----TEEEEEESSSCCCEEEEC
T ss_pred             CcEEEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCC-----CEEEEEecCCCCcEEEEE
Confidence            34566666557888888753321   0011111224566788887 45566665544     899999987665433333


Q ss_pred             c-cCceeEEEEcCC-eEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCc--cCeEEEEEc
Q 014977          132 F-RSDVRSVKLSRD-RIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ--RGQVRIEHF  204 (415)
Q Consensus       132 ~-~~~i~~l~~~~~-~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~--dg~v~i~~~  204 (415)
                      . ......++++++ +.+.+   ..+.|.++++.............  .....+..++++..|.++...  .+.|...+.
T Consensus        76 ~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~--~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~  153 (267)
T 1npe_A           76 QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGL--VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHM  153 (267)
T ss_dssp             TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC--SSEEEEEEETTTTEEEEEECCSSSCEEEEEET
T ss_pred             CCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCC--CCccEEEEeeCCCEEEEEECCCCCcEEEEEec
Confidence            2 257789999985 44444   46789999986432222222111  234555666533333333322  467777666


Q ss_pred             CCcceEEEe-cCccceEEEEeCCCCCEEEEEeC-CCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEe-C
Q 014977          205 GLNMIKLIN-AHDSHIACFTLTLDGLLLATAST-RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVAS-D  281 (415)
Q Consensus       205 ~~~~~~~~~-~~~~~i~~l~~sp~g~~l~s~s~-dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s-~  281 (415)
                      ++.....+. ..-.....+++++++..|+.+.. .+. |.++|.........+..   ......++..  +..|+.+. .
T Consensus       154 dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~-I~~~~~~g~~~~~~~~~---~~~P~gi~~d--~~~lyva~~~  227 (267)
T 1npe_A          154 DGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHR-AECLNPAQPGRRKVLEG---LQYPFAVTSY--GKNLYYTDWK  227 (267)
T ss_dssp             TSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTEEEEEEEEEC---CCSEEEEEEE--TTEEEEEETT
T ss_pred             CCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCE-EEEEecCCCceEEEecC---CCCceEEEEe--CCEEEEEECC
Confidence            665554443 33345788999998776665554 456 99999865443333333   1234567664  44455444 5


Q ss_pred             CCeEEEEEceecccC
Q 014977          282 KGTVHIFSLRVRVVG  296 (415)
Q Consensus       282 dg~i~vwd~~~~~~~  296 (415)
                      .+.|.++|..+++..
T Consensus       228 ~~~v~~~d~~~g~~~  242 (267)
T 1npe_A          228 TNSVIAMDLAISKEM  242 (267)
T ss_dssp             TTEEEEEETTTTEEE
T ss_pred             CCeEEEEeCCCCCce
Confidence            689999999887654

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.86  E-value=3.5e-07  Score=82.94  Aligned_cols=219  Identities=9%  Similarity=-0.022  Sum_probs=143.6

Q ss_pred             CCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE-cc
Q 014977           56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FR  133 (415)
Q Consensus        56 g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~  133 (415)
                      +..+.+++ ++.+..++.+ ++.......  ....+..+...+++.++++.. +     +.|..+|.. ++.+..+. ..
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~--~~~~~~~~~~~~~g~l~vgt~-~-----~~l~~~d~~-g~~~~~~~~~~  176 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKT--KKAIYATPIVSEDGTIYVGSN-D-----NYLYAINPD-GTEKWRFKTND  176 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEEC--SSCCCSCCEECTTSCEEEECT-T-----SEEEEECTT-SCEEEEEECSS
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcC--CCceeeeeEEcCCCEEEEEcC-C-----CEEEEECCC-CCEeEEEecCC
Confidence            44566677 8899999987 555444433  222233445565666655543 3     899999988 88877776 35


Q ss_pred             CceeEEEEcCCeEEEEeCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEe
Q 014977          134 SDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLIN  213 (415)
Q Consensus       134 ~~i~~l~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~  213 (415)
                      ..+.++.+.+++.+.+..+.|..+| .+++.+..+.....  .+.++..++++.+.+.  +.++.+..++.++..+..+.
T Consensus       177 ~~~~~~~~d~~g~l~v~t~~l~~~d-~~g~~~~~~~~~~~--~~~~~~~~~~g~l~v~--t~~~gl~~~~~~g~~~~~~~  251 (330)
T 3hxj_A          177 AITSAASIGKDGTIYFGSDKVYAIN-PDGTEKWNFYAGYW--TVTRPAISEDGTIYVT--SLDGHLYAINPDGTEKWRFK  251 (330)
T ss_dssp             CCCSCCEECTTCCEEEESSSEEEEC-TTSCEEEEECCSSC--CCSCCEECTTSCEEEE--ETTTEEEEECTTSCEEEEEE
T ss_pred             CceeeeEEcCCCEEEEEeCEEEEEC-CCCcEEEEEccCCc--ceeceEECCCCeEEEE--cCCCeEEEECCCCCEeEEee
Confidence            5677788877887777339999999 77777766654433  2334444556555543  34666777676677666666


Q ss_pred             cCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceec
Q 014977          214 AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR  293 (415)
Q Consensus       214 ~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~  293 (415)
                      .....+..+.+.++|. |..++.++. |..+|. +++.+..+..  ....+.++...++|+ |..++.+|.+++...+..
T Consensus       252 ~~~~~~~~~~~~~~g~-l~v~t~~gg-l~~~d~-~g~~~~~~~~--~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~  325 (330)
T 3hxj_A          252 TGKRIESSPVIGNTDT-IYFGSYDGH-LYAINP-DGTEKWNFET--GSWIIATPVIDENGT-IYFGTRNGKFYALFNLEH  325 (330)
T ss_dssp             CSSCCCSCCEECTTSC-EEEECTTCE-EEEECT-TSCEEEEEEC--SSCCCSCCEECTTCC-EEEECTTSCEEEEEC---
T ss_pred             CCCCccccceEcCCCe-EEEecCCCC-EEEECC-CCcEEEEEEc--CCccccceEEcCCCE-EEEEcCCCeEEEEecccc
Confidence            5555555666766775 666778888 999995 7887777664  344566777777876 556889999998877665


Q ss_pred             cc
Q 014977          294 VV  295 (415)
Q Consensus       294 ~~  295 (415)
                      ++
T Consensus       326 ~~  327 (330)
T 3hxj_A          326 HH  327 (330)
T ss_dssp             --
T ss_pred             cc
Confidence            43

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.86  E-value=1.2e-06  Score=88.05  Aligned_cols=192  Identities=13%  Similarity=0.099  Sum_probs=112.0

Q ss_pred             CCEEEEEe-CCcEEEEEccCCceeEEEeccCCCe--------e-EEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCC
Q 014977           56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGF--------R-IVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR  125 (415)
Q Consensus        56 g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~  125 (415)
                      +..+++++ ++.|.-+|.++++.+.+........        . ...+... ++.+++.. .+     +.|..+|.++|+
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~v~v~~-~d-----g~l~AlDa~TG~  142 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVW-KGKVYVGV-LD-----GRLEAIDAKTGQ  142 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE-TTEEEEEC-TT-----SEEEEEETTTCC
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEE-CCEEEEEc-cC-----CEEEEEECCCCC
Confidence            44566666 8889999999988887765422110        0 0111222 33444443 34     999999999999


Q ss_pred             EEEEEEcc-C--ceeEEEEcC---CeEEEE-e-------CCeEEEEEcCCceeeeEEeccC-CCc---------------
Q 014977          126 CIGEFAFR-S--DVRSVKLSR---DRIVVV-L-------EHKIYVYSFVDLKLLHQIETLA-NLR---------------  175 (415)
Q Consensus       126 ~~~~~~~~-~--~i~~l~~~~---~~~~~~-~-------d~~i~iwd~~~~~~~~~~~~~~-~~~---------------  175 (415)
                      .+..+... .  ....+...|   ++.+++ .       ++.|+.||..+|+.+..+.... .+.               
T Consensus       143 ~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~  222 (689)
T 1yiq_A          143 RAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTW  222 (689)
T ss_dssp             EEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTC
T ss_pred             EeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccccccccccccccc
Confidence            99888743 1  111111122   555555 2       5899999999999988775311 000               


Q ss_pred             -------------ceEEEecCCCceEEEEeCCccCe-------------------EEEEEc-CCcceEEEec--Cc----
Q 014977          176 -------------GLCCLSHHSSTSVLACPGLQRGQ-------------------VRIEHF-GLNMIKLINA--HD----  216 (415)
Q Consensus       176 -------------~~~~~~~~~~~~~l~~~g~~dg~-------------------v~i~~~-~~~~~~~~~~--~~----  216 (415)
                                   .....+.+++..++++ +..++.                   |..++. +++.+..++.  |.    
T Consensus       223 ~g~~w~~~~~g~~~w~~~~~d~~~~~vy~-~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~  301 (689)
T 1yiq_A          223 FGDAYVEQGGGGTAWDSFAYDPELNLLYI-GVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDY  301 (689)
T ss_dssp             CSSTHHHHCEECCCCSCEEEETTTTEEEE-ECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCC
T ss_pred             CCceeeecCCCCccccceeEcCCCCEEEE-eCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccc
Confidence                         0012334444444444 444442                   555554 5666666553  21    


Q ss_pred             ---cceEEEEeCCCCC---EEEEEeCCCcEEEEEECCCCcEEEEEe
Q 014977          217 ---SHIACFTLTLDGL---LLATASTRGTLIRIFNTVDGTRLQEVR  256 (415)
Q Consensus       217 ---~~i~~l~~sp~g~---~l~s~s~dg~~I~vwd~~~~~~~~~~~  256 (415)
                         .++.......+|+   .|+.++.+|. ++++|..+|+.+....
T Consensus       302 ~~~~~~~l~d~~~~G~~~~~v~~~~~~G~-l~~lD~~tG~~l~~~~  346 (689)
T 1yiq_A          302 TATQHMILAELPIDGKPRKVLMQAPKNGF-FYVIDRATGELLSAKG  346 (689)
T ss_dssp             CCCSCEEEEEEEETTEEEEEEEECCTTSE-EEEEETTTCCEEEEEE
T ss_pred             cCCCCcEEEeeccCCcEEEEEEEECCCCe-EEEEECCCCCEecccc
Confidence               1111222223565   7888999999 9999999999886544

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.81  E-value=4.9e-07  Score=82.84  Aligned_cols=199  Identities=8%  Similarity=0.012  Sum_probs=121.9

Q ss_pred             eeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE--------ccCceeEEEEcCCeEEEE-e-------C
Q 014977           88 FRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA--------FRSDVRSVKLSRDRIVVV-L-------E  151 (415)
Q Consensus        88 ~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~--------~~~~i~~l~~~~~~~~~~-~-------d  151 (415)
                      .....+.+++++.++++....   .++.++||.+.+++. ..+.        +-..+.++++++++++.+ .       +
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~---~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~   92 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQF---YQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSV   92 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGG---GCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSC
T ss_pred             CCcceEEECCCCCEEEEeCCC---CCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCC
Confidence            457778889888887774310   113245555445542 2221        235789999999987766 2       3


Q ss_pred             CeEEEEEcCCceeeeEEeccCC----CcceEEEecCCCceEEEEeCC---ccCeEEEEEcCCc-ceEEEecC--------
Q 014977          152 HKIYVYSFVDLKLLHQIETLAN----LRGLCCLSHHSSTSVLACPGL---QRGQVRIEHFGLN-MIKLINAH--------  215 (415)
Q Consensus       152 ~~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~g~---~dg~v~i~~~~~~-~~~~~~~~--------  215 (415)
                      ..|.+||+.+++.+..+.....    ......+..++++..+.++..   .++.|.+++.... ..+.+..|        
T Consensus        93 ~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~  172 (343)
T 2qe8_A           93 PKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDI  172 (343)
T ss_dssp             CEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSC
T ss_pred             CeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccc
Confidence            7999999999987777654311    012234444443223333344   5678888776533 22222221        


Q ss_pred             ---------------------ccceEEEEeCCCCCEEEEEeCCCcEEEEEECC---CCc--------EEEEEecCCCccc
Q 014977          216 ---------------------DSHIACFTLTLDGLLLATASTRGTLIRIFNTV---DGT--------RLQEVRRGVDRAE  263 (415)
Q Consensus       216 ---------------------~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~---~~~--------~~~~~~~~~~~~~  263 (415)
                                           ...+..|+|+|+|+.|+.+...+..|..++..   .+.        .+..+ +  +...
T Consensus       173 ~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-g--~~g~  249 (343)
T 2qe8_A          173 DLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERY-S--EKPI  249 (343)
T ss_dssp             CCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEE-E--ECCS
T ss_pred             ceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEec-c--cCCC
Confidence                                 02357899999999888888776436666532   111        01111 1  2224


Q ss_pred             EEEEEeCCCCCEEEEEeCCCeEEEEEceec
Q 014977          264 IYSIALSPNVQWLAVASDKGTVHIFSLRVR  293 (415)
Q Consensus       264 v~~l~~spdg~~l~s~s~dg~i~vwd~~~~  293 (415)
                      ...++++++|.++++...++.|.+||.+++
T Consensus       250 pdgia~d~~G~l~va~~~~~~V~~~d~~~G  279 (343)
T 2qe8_A          250 CDGISIDKDHNIYVGDLAHSAIGVITSADR  279 (343)
T ss_dssp             CSCEEECTTCCEEEEEGGGTEEEEEETTTT
T ss_pred             CceEEECCCCCEEEEccCCCeEEEEECCCC
Confidence            567999999999999888999999998444

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.81  E-value=7.6e-10  Score=102.75  Aligned_cols=170  Identities=11%  Similarity=-0.027  Sum_probs=93.3

Q ss_pred             CeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEE
Q 014977          114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLA  190 (415)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  190 (415)
                      +.|..||..+|+.+..+.. ..+.+..+..++..++   .|+.|+.||..+++.+..+..+.............++ .++
T Consensus        19 g~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~~~~-~v~   96 (369)
T 2hz6_A           19 GSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRSSDG-ILY   96 (369)
T ss_dssp             SEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC------CC
T ss_pred             CEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEecCC-EEE
Confidence            9999999999999998887 5555555556664444   5899999999888877655432110000000111122 333


Q ss_pred             EeCCccCeEEEEEcC-CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEe
Q 014977          191 CPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIAL  269 (415)
Q Consensus       191 ~~g~~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~  269 (415)
                       +|+.++.++.++.. ++.+..+..+.    ...++|++..|++++.|+. |+.||.++|+.+..+...    ......+
T Consensus        97 -~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~-v~a~d~~tG~~~W~~~~~----~~~~~~~  166 (369)
T 2hz6_A           97 -MGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYT-ITMYDTKTRELRWNATYF----DYAASLP  166 (369)
T ss_dssp             -CCEEEEEEEEECCC--------------------------EEEEEEEEE-EECCCSSSSSCCCEEEEE----EECCBCC
T ss_pred             -EEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCE-EEEEECCCCCEEEeEecc----cccCccc
Confidence             46678889887755 55555555443    2345678888999999999 999999999887666531    1223334


Q ss_pred             CCCC---CEEEEEeCCCeEEEEEceeccc
Q 014977          270 SPNV---QWLAVASDKGTVHIFSLRVRVV  295 (415)
Q Consensus       270 spdg---~~l~s~s~dg~i~vwd~~~~~~  295 (415)
                      +++.   ..+++++.||.|+.||.++++.
T Consensus       167 ~~~~~~~~~v~~~~~dg~v~a~d~~tG~~  195 (369)
T 2hz6_A          167 EDDVDYKMSHFVSNGDGLVVTVDSESGDV  195 (369)
T ss_dssp             CCCTTCCCCEEEEETSCEEEEECTTTCCE
T ss_pred             cCCccccceEEEECCCCEEEEEECCCCcE
Confidence            4432   4577788999999999998875

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.81  E-value=4.5e-06  Score=75.60  Aligned_cols=235  Identities=10%  Similarity=-0.025  Sum_probs=140.7

Q ss_pred             ceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccC-----------------CCeeEEEEeeeC-CeEEEEecC
Q 014977           46 ELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKS-----------------GGFRIVEMLFRC-NILALVGAG  106 (415)
Q Consensus        46 ~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~-~~~~l~s~~  106 (415)
                      ...+++|.++|+++.++. ++.|..|+.++...........                 .......+.+.+ ++.++++..
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~   99 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC   99 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC
Confidence            356778899998777777 8889989876533221110000                 012467788886 777666644


Q ss_pred             CCCCCCCCeEEEEECCCCCEEEEEE---c---cCceeEEEEcC-CeEEEEeC--------------------CeEEEEEc
Q 014977          107 DNSQYPPTKVIIWDDHQSRCIGEFA---F---RSDVRSVKLSR-DRIVVVLE--------------------HKIYVYSF  159 (415)
Q Consensus       107 ~d~~~~~~~i~vwd~~~~~~~~~~~---~---~~~i~~l~~~~-~~~~~~~d--------------------~~i~iwd~  159 (415)
                      .      +.|..+|..+++. ..+.   .   ......+++.+ +|.+.+.|                    +.|..||.
T Consensus       100 ~------~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~  172 (322)
T 2fp8_A          100 Y------YHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDP  172 (322)
T ss_dssp             T------TEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEET
T ss_pred             C------CCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeC
Confidence            3      4588888665532 2222   1   13578899999 88776621                    56888887


Q ss_pred             CCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCc---ceEEEecCccceEEEEeCCCCCEEEEEeC
Q 014977          160 VDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN---MIKLINAHDSHIACFTLTLDGLLLATAST  236 (415)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~---~~~~~~~~~~~i~~l~~sp~g~~l~s~s~  236 (415)
                      .+++.........   ....+++++++..|.++....+.|..++..+.   ....+....+ ...+++.++|++.++...
T Consensus       173 ~~~~~~~~~~~~~---~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~  248 (322)
T 2fp8_A          173 STKETTLLLKELH---VPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSE  248 (322)
T ss_dssp             TTTEEEEEEEEES---CCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEE
T ss_pred             CCCEEEEeccCCc---cCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecC
Confidence            7665433222212   22335556666555444445678888666542   2222222223 778999999987666544


Q ss_pred             ----------CCcEEEEEECCCCcEEEEEecCCC--cccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977          237 ----------RGTLIRIFNTVDGTRLQEVRRGVD--RAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (415)
Q Consensus       237 ----------dg~~I~vwd~~~~~~~~~~~~~~~--~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  294 (415)
                                .+. |..+|. .++.+..+.....  ...+..+++ .+++++++....+.|.++++....
T Consensus       249 ~~~~~~~~~~~~~-v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~~  315 (322)
T 2fp8_A          249 ELDGNMHGRVDPK-GIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKKG  315 (322)
T ss_dssp             ETTSSTTSCEEEE-EEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC----
T ss_pred             cccccccCCCccE-EEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccccc
Confidence                      456 888886 5887777764211  234666666 466666665667889999987544

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.80  E-value=3.3e-05  Score=79.01  Aligned_cols=236  Identities=12%  Similarity=0.137  Sum_probs=151.3

Q ss_pred             eEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCE
Q 014977           47 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRC  126 (415)
Q Consensus        47 V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~  126 (415)
                      |.++...+++.+.+...++.+..|+..+........ ......+.++....++.+.++...      +.|..||..+++.
T Consensus       175 i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~-~~~~~~i~~i~~d~~g~lwigt~~------~Gl~~~~~~~~~~  247 (795)
T 4a2l_A          175 IASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIP-ILGTKQIQAILQQSPTRIWVATEG------AGLFLINPKTKEI  247 (795)
T ss_dssp             CEEEEEEETTEEEEEESSSCEEEEETTTCCEEECC-----CCCEEEEEEEETTEEEEEEBS------SCEEEEETTTTEE
T ss_pred             eEEEEECCCCCEEEEECCCCEEEEeCCCCeEEEecC-CCCCCeeEEEEEcCCCCEEEEECC------CCeEEEeCCCCeE
Confidence            888888888876664336678888876543221101 122445777777777776666543      4588899776654


Q ss_pred             EEEEEc---------cCceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEecc-----CCCcceEEEecCCCceEEEE
Q 014977          127 IGEFAF---------RSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETL-----ANLRGLCCLSHHSSTSVLAC  191 (415)
Q Consensus       127 ~~~~~~---------~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~  191 (415)
                      . .+.+         ...|.++...+++.+.+ .++.|.+||..+++........     .....+.++..+.++.+.+ 
T Consensus       248 ~-~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-  325 (795)
T 4a2l_A          248 K-NYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFNDLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWL-  325 (795)
T ss_dssp             E-EECCCTTCTTSCSCSBEEEEEECTTSCEEEEESSCEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEE-
T ss_pred             E-EeecCCCCccccCCCeEEEEEEcCCCCEEEEeCChhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEE-
Confidence            3 3322         35689999998887776 5568999998776543322111     1123567788888877654 


Q ss_pred             eCCccCeEEEEEcCCcceEEEec-------CccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEec------C
Q 014977          192 PGLQRGQVRIEHFGLNMIKLINA-------HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR------G  258 (415)
Q Consensus       192 ~g~~dg~v~i~~~~~~~~~~~~~-------~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~------~  258 (415)
                       |..++-|..++........+..       ....|.++...++|. |..|+.++. |..||..+++...-...      .
T Consensus       326 -gt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~G-l~~~~~~~~~~~~~~~~~~~~~~~  402 (795)
T 4a2l_A          326 -GTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGG-LNLYNPITQRFTSYTLQEDESARG  402 (795)
T ss_dssp             -EESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSC-EEEECTTTCCEEEECCC------C
T ss_pred             -EECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCC-eEEEcCCCCcEEEEecCCCCcccC
Confidence             3355566666555444444332       235689999999887 445777777 99999877665432211      0


Q ss_pred             CCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977          259 VDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (415)
Q Consensus       259 ~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  294 (415)
                      .....|.++...++|+.|..|+.++-|.+||.++++
T Consensus       403 l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~  438 (795)
T 4a2l_A          403 IGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ  438 (795)
T ss_dssp             CSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCC
T ss_pred             CCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc
Confidence            123579999998898856678877779999987765

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.79  E-value=1.2e-06  Score=85.94  Aligned_cols=236  Identities=8%  Similarity=-0.039  Sum_probs=138.6

Q ss_pred             CCEEEEEe-CCcEEEEEccCCceeEEEeccCCCe--eEE-EEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE
Q 014977           56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGF--RIV-EMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA  131 (415)
Q Consensus        56 g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~  131 (415)
                      +..+++++ ++.+..+|..+++.+....+..+..  .+. ..... ++.+++.......-.++.|..+|..+|+.+..+.
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  193 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence            44666676 8999999999888877765522110  111 01112 4455555432000012899999999999999887


Q ss_pred             ccCce---------------------------------------eEEEEcCC-eEEEE-e-C----------------Ce
Q 014977          132 FRSDV---------------------------------------RSVKLSRD-RIVVV-L-E----------------HK  153 (415)
Q Consensus       132 ~~~~i---------------------------------------~~l~~~~~-~~~~~-~-d----------------~~  153 (415)
                      .....                                       ..+++.++ +.+.+ . +                +.
T Consensus       194 ~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~  273 (571)
T 2ad6_A          194 ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMT  273 (571)
T ss_dssp             SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTE
T ss_pred             cCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEE
Confidence            32211                                       12455553 33333 2 1                25


Q ss_pred             EEEEEcCCceeeeEEeccCCC-------cceEEEecCCCce--EEEEeCCccCeEEEEE-cCCcceEEEecCc-------
Q 014977          154 IYVYSFVDLKLLHQIETLANL-------RGLCCLSHHSSTS--VLACPGLQRGQVRIEH-FGLNMIKLINAHD-------  216 (415)
Q Consensus       154 i~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~--~l~~~g~~dg~v~i~~-~~~~~~~~~~~~~-------  216 (415)
                      |..+|..+++.+..++...+.       ...+.+....+++  .+++.++.+|.+++.+ .+++.+.......       
T Consensus       274 v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~  353 (571)
T 2ad6_A          274 IWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKK  353 (571)
T ss_dssp             EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred             EEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccccc
Confidence            999999999998877643211       1111122112342  2333466788888855 4555544443211       


Q ss_pred             ------cce--------------------------EEEEeCCCCCEEEEEe-----------------------------
Q 014977          217 ------SHI--------------------------ACFTLTLDGLLLATAS-----------------------------  235 (415)
Q Consensus       217 ------~~i--------------------------~~l~~sp~g~~l~s~s-----------------------------  235 (415)
                            .++                          ..++++|+..+|++..                             
T Consensus       354 ~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~  433 (571)
T 2ad6_A          354 VDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYP  433 (571)
T ss_dssp             ECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred             ccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceecc
Confidence                  111                          2357788777776653                             


Q ss_pred             --------CCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977          236 --------TRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       236 --------~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                              .++. |..||+.+++.+.++...   ..+....+...+..++.++.||.|+.||.++++..
T Consensus       434 ~~~~~~~~~~g~-l~a~D~~tG~~~W~~~~~---~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~l  498 (571)
T 2ad6_A          434 GPNGPTKKEMGQ-IRAFDLTTGKAKWTKWEK---FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKEL  498 (571)
T ss_dssp             CTTSTTSCCCEE-EEEECTTTCCEEEEEEES---SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             CccccCCCCCCe-EEEEECCCCCEEEEecCC---CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEE
Confidence                    2467 999999999998887642   12222222334567778999999999999998853

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.79  E-value=3.9e-06  Score=72.29  Aligned_cols=179  Identities=9%  Similarity=0.089  Sum_probs=121.5

Q ss_pred             CeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCcee--EEEEcCCeEEEE--eCCeEEEEEcCCc
Q 014977           87 GFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVR--SVKLSRDRIVVV--LEHKIYVYSFVDL  162 (415)
Q Consensus        87 ~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~--~l~~~~~~~~~~--~d~~i~iwd~~~~  162 (415)
                      ......+.|+.+ .++.+.+.+     +.|+++|+++++.+..+ ......  .+++..+..+++  .++.+.+||..++
T Consensus        54 ~~ftqGL~~~~~-~Ly~stG~~-----g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl  126 (268)
T 3nok_A           54 NAFTQGLVFHQG-HFFESTGHQ-----GTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPP  126 (268)
T ss_dssp             TCCEEEEEEETT-EEEEEETTT-----TEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTT
T ss_pred             ccccceEEEECC-EEEEEcCCC-----CEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcC
Confidence            344456677754 555555655     88999999999998888 655543  477777766666  5999999999999


Q ss_pred             eeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEc-CCcceEEEecC--cc---ceEEEEeCCCCCEEEEEeC
Q 014977          163 KLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHF-GLNMIKLINAH--DS---HIACFTLTLDGLLLATAST  236 (415)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~-~~~~~~~~~~~--~~---~i~~l~~sp~g~~l~s~s~  236 (415)
                      +.+.++.....   ...++++.  ..|+.+. .++.|.+.+. +.+.+..+...  ..   .++.+.|. +|++.+....
T Consensus       127 ~~~~ti~~~~e---GwGLt~Dg--~~L~vSd-Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~  199 (268)
T 3nok_A          127 QRERTTRYSGE---GWGLCYWN--GKLVRSD-GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWH  199 (268)
T ss_dssp             EEEEEEECSSC---CCCEEEET--TEEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred             cEEEEEeCCCc---eeEEecCC--CEEEEEC-CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECC
Confidence            99999976443   23444543  3444433 3777887554 44555555432  22   34567776 7765555545


Q ss_pred             CCcEEEEEECCCCcEEEEEecCC-----------CcccEEEEEeCCCCCEEEEEe
Q 014977          237 RGTLIRIFNTVDGTRLQEVRRGV-----------DRAEIYSIALSPNVQWLAVAS  280 (415)
Q Consensus       237 dg~~I~vwd~~~~~~~~~~~~~~-----------~~~~v~~l~~spdg~~l~s~s  280 (415)
                      +.. |.+.|.++|+.+..+....           .....+.|+|+|+++.|++.+
T Consensus       200 s~~-I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          200 SSD-VLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             CSE-EEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             CCe-EEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            667 9999999999998887420           113578999999876665544

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.77  E-value=1.2e-05  Score=68.56  Aligned_cols=195  Identities=14%  Similarity=0.161  Sum_probs=128.1

Q ss_pred             CCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCce--eEEEEcCCeEEEE--eCCeEEEEEcC
Q 014977           85 SGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDV--RSVKLSRDRIVVV--LEHKIYVYSFV  160 (415)
Q Consensus        85 ~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i--~~l~~~~~~~~~~--~d~~i~iwd~~  160 (415)
                      ........+.|+++ .++.+.+.+   ..+.|+++|+.+++.+..+......  ..+.+..+..+.+  .++.+.+||..
T Consensus        18 d~~~ftqGL~~~~~-~LyestG~~---g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~   93 (243)
T 3mbr_X           18 DTTAFTEGLFYLRG-HLYESTGET---GRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLA   93 (243)
T ss_dssp             CTTCCEEEEEEETT-EEEEEECCT---TSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETT
T ss_pred             CCccccccEEEECC-EEEEECCCC---CCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECC
Confidence            44455667788875 445554442   1259999999999999998855444  3456666666666  59999999999


Q ss_pred             CceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEc-CCcceEEEecCc-----cceEEEEeCCCCCEEEEE
Q 014977          161 DLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHF-GLNMIKLINAHD-----SHIACFTLTLDGLLLATA  234 (415)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~-~~~~~~~~~~~~-----~~i~~l~~sp~g~~l~s~  234 (415)
                      +.+.+.++.....   ...++++.. .++ .+- .++.|.+.+. +.+.+..+....     ..++.+.+. +|++.+..
T Consensus        94 tl~~~~ti~~~~~---Gwglt~dg~-~L~-vSd-gs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanv  166 (243)
T 3mbr_X           94 TLTPRARFRYPGE---GWALTSDDS-HLY-MSD-GTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANV  166 (243)
T ss_dssp             TTEEEEEEECSSC---CCEEEECSS-CEE-EEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred             cCcEEEEEeCCCC---ceEEeeCCC-EEE-EEC-CCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEE
Confidence            9999999976543   244555543 333 333 3677887554 445555554322     234556665 67655555


Q ss_pred             eCCCcEEEEEECCCCcEEEEEecCC-----------CcccEEEEEeCCCCCEEEEEeCCCeEEEEEcee
Q 014977          235 STRGTLIRIFNTVDGTRLQEVRRGV-----------DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV  292 (415)
Q Consensus       235 s~dg~~I~vwd~~~~~~~~~~~~~~-----------~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~  292 (415)
                      -.+.. |.+.|.++|+.+..+....           .....+.|+++|+++.|.+.+.- -=++|.++-
T Consensus       167 w~s~~-I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~-wp~~~~v~~  233 (243)
T 3mbr_X          167 WLTSR-IARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR-WPMLYEIRL  233 (243)
T ss_dssp             TTTTE-EEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT-CSEEEEEEE
T ss_pred             CCCCe-EEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC-CCcEEEEEE
Confidence            45667 9999999999998887321           12367899999987777665532 124555543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.76  E-value=1.5e-05  Score=69.39  Aligned_cols=192  Identities=11%  Similarity=-0.008  Sum_probs=124.8

Q ss_pred             ceEEEEEeCCCCEEEEEe---CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECC
Q 014977           46 ELISVSWNQDYGCFAAGT---SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH  122 (415)
Q Consensus        46 ~V~~l~~sp~g~~la~g~---d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~  122 (415)
                      ....+.|++++.++++.+   ++.|+++|+.+++......+. .......+.+..+..+.++ ..+     +.+.++|..
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~-~~~fgeGi~~~g~~lyv~t-~~~-----~~v~viD~~   94 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMD-DSYFGEGLTLLNEKLYQVV-WLK-----NIGFIYDRR   94 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECC-TTCCEEEEEEETTEEEEEE-TTC-----SEEEEEETT
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecC-CCcceEEEEEeCCEEEEEE-ecC-----CEEEEEECC
Confidence            468999999876555543   578999999998776665552 2233345666665555544 444     999999999


Q ss_pred             CCCEEEEEEcc-CceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCC--Cc-ceEEEecCCCceEEEEeCCc
Q 014977          123 QSRCIGEFAFR-SDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLAN--LR-GLCCLSHHSSTSVLACPGLQ  195 (415)
Q Consensus       123 ~~~~~~~~~~~-~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~l~~~g~~  195 (415)
                      +.+.+.++... ..-..  +++|+..+.   .++.|.++|..+.+.+..+.....  ++ ....+.+. ++.+.+. ...
T Consensus        95 t~~v~~~i~~g~~~g~g--lt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn-~~~  170 (266)
T 2iwa_A           95 TLSNIKNFTHQMKDGWG--LATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWAN-IWQ  170 (266)
T ss_dssp             TTEEEEEEECCSSSCCE--EEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEE-ETT
T ss_pred             CCcEEEEEECCCCCeEE--EEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEe-cCC
Confidence            99999998754 33333  444544333   568999999999988888764322  11 12344444 4555444 334


Q ss_pred             cCeEEE-EEcCCcceEEEecCc-------------cceEEEEeCCCCCEEEE-EeCCCcEEEEEECCCC
Q 014977          196 RGQVRI-EHFGLNMIKLINAHD-------------SHIACFTLTLDGLLLAT-ASTRGTLIRIFNTVDG  249 (415)
Q Consensus       196 dg~v~i-~~~~~~~~~~~~~~~-------------~~i~~l~~sp~g~~l~s-~s~dg~~I~vwd~~~~  249 (415)
                      ++.|.+ +..+++.+..+....             ...+.|+|+|+++.|++ +...+. |.+.++...
T Consensus       171 ~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~-v~~i~l~~~  238 (266)
T 2iwa_A          171 TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPK-LFEIKLHLV  238 (266)
T ss_dssp             SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSE-EEEEEEEEC
T ss_pred             CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCe-EEEEEEecc
Confidence            667776 555667777765321             34589999999875554 545666 888877543

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=98.74  E-value=8.6e-05  Score=68.08  Aligned_cols=258  Identities=13%  Similarity=0.171  Sum_probs=176.8

Q ss_pred             CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEc-
Q 014977           64 SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLS-  142 (415)
Q Consensus        64 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~-  142 (415)
                      ...|.|.|+.......++.. .....+    .+|....++--..      ..+.++|+++.+.++.+.....|.--.|- 
T Consensus        47 ~~~vvIiDl~~~~~~~rrpi-~AdsAI----MnP~~~iiALrag------~~lQiFnle~K~klks~~~~e~VvfWkWis  115 (494)
T 1bpo_A           47 QAQVVIIDMNDPSNPIRRPI-SADSAI----MNPASKVIALKAG------KTLQIFNIEMKSKMKAHTMTDDVTFWKWIS  115 (494)
T ss_dssp             CCEEEEEETTSTTSCEEEEC-CCSEEE----ECSSSSCEEEEET------TEEEEEETTTTEEEEEEECSSCCCEEEEEE
T ss_pred             CCeEEEEECCCCCcceeccc-ccceee----eCCCCcEEEEecC------CeEEEEchHHhhhhcceecCCCceEEEecC
Confidence            44688899987666666554 333333    2444433333222      89999999999999999977777777775 


Q ss_pred             CCeEEEEeCCeEEEEEcCC-ceeeeEEeccC--CCcceEEEecCCCceEEEEeCC------ccCeEEEEEcCCcceEEEe
Q 014977          143 RDRIVVVLEHKIYVYSFVD-LKLLHQIETLA--NLRGLCCLSHHSSTSVLACPGL------QRGQVRIEHFGLNMIKLIN  213 (415)
Q Consensus       143 ~~~~~~~~d~~i~iwd~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~g~------~dg~v~i~~~~~~~~~~~~  213 (415)
                      ++..-++.+..|+-|++.. ..+.+.+..|.  ....++.+..+++.++++..|-      -.|.+.++....+.-+.+.
T Consensus       116 ~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ie  195 (494)
T 1bpo_A          116 LNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIE  195 (494)
T ss_dssp             TTEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEEC
T ss_pred             CCeEEEEcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchhe
Confidence            4555555999999999964 35666665543  2356788888999888876653      3577888999999999999


Q ss_pred             cCccceEEEEeCCCC---CEEEEEeCC---CcEEEEEECCCC--------cEEEEEe--cCCCcccEEEEEeCCCCCEEE
Q 014977          214 AHDSHIACFTLTLDG---LLLATASTR---GTLIRIFNTVDG--------TRLQEVR--RGVDRAEIYSIALSPNVQWLA  277 (415)
Q Consensus       214 ~~~~~i~~l~~sp~g---~~l~s~s~d---g~~I~vwd~~~~--------~~~~~~~--~~~~~~~v~~l~~spdg~~l~  277 (415)
                      +|......+.+.-+.   .+++.+...   +. ++|-++...        +....+.  ......-..++..++.-..+.
T Consensus       196 Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~k-Lhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviy  274 (494)
T 1bpo_A          196 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGK-LHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVF  274 (494)
T ss_dssp             CSEEEEEEEECTTCSSEEEEEEEEECSTTCCE-EEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEE
T ss_pred             eeeeeeEEEecCCCCCCceEEEEEEecCCCcE-EEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEE
Confidence            998877766654322   245545443   56 999998432        1111111  111123455788888888999


Q ss_pred             EEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEe
Q 014977          278 VASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHI  357 (415)
Q Consensus       278 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (415)
                      ..+.-|.|++||++++.+.                                        |                .-++
T Consensus       275 viTK~G~i~lyDleTgt~i----------------------------------------~----------------~nrI  298 (494)
T 1bpo_A          275 LITKYGYIHLYDLETGTCI----------------------------------------Y----------------MNRI  298 (494)
T ss_dssp             EEETTSEEEEEETTTCCEE----------------------------------------E----------------EEEC
T ss_pred             EEecCceEEEEecccceee----------------------------------------e----------------eecc
Confidence            9999999999999999854                                        1                2233


Q ss_pred             CCCceEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977          358 PEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       358 ~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~  389 (415)
                      ..+...+.+...+ +-+++....|.|+-..+++
T Consensus       299 s~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e  331 (494)
T 1bpo_A          299 SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE  331 (494)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETTCEEEEEEECT
T ss_pred             cCCceEEecccCCCCcEEEEccCceEEEEEEcc
Confidence            3445555555444 8899999999888888876

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.73  E-value=2.6e-06  Score=85.23  Aligned_cols=236  Identities=11%  Similarity=0.022  Sum_probs=141.5

Q ss_pred             CCEEEEEe-CCcEEEEEccCCceeEEEeccCCC--eeEE-EEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE
Q 014977           56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGG--FRIV-EMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA  131 (415)
Q Consensus        56 g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~  131 (415)
                      +..+++++ ++.|..+|.++++.+.........  ..+. ..... ++.+++..+....-.++.|..+|..+|+.+..+.
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  195 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV-KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY  195 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEE-CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence            44667777 999999999998887776542110  1110 00111 4455554332100023899999999999999886


Q ss_pred             cc--Cc------------------------------eeEEEEcCCeEEEE---eCC-------------------eEEEE
Q 014977          132 FR--SD------------------------------VRSVKLSRDRIVVV---LEH-------------------KIYVY  157 (415)
Q Consensus       132 ~~--~~------------------------------i~~l~~~~~~~~~~---~d~-------------------~i~iw  157 (415)
                      ..  .+                              ...+++.++..++.   .++                   .|..+
T Consensus       196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al  275 (668)
T 1kv9_A          196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI  275 (668)
T ss_dssp             SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred             ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence            21  00                              11357776543333   233                   49999


Q ss_pred             EcCCceeeeEEeccCC---------CcceEEEecCCCceEEEEeCCccCeEEEEEc-CCcceEEEecCc-----------
Q 014977          158 SFVDLKLLHQIETLAN---------LRGLCCLSHHSSTSVLACPGLQRGQVRIEHF-GLNMIKLINAHD-----------  216 (415)
Q Consensus       158 d~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~-~~~~~~~~~~~~-----------  216 (415)
                      |..+++.+..++....         +.....+..+.....+++.++.+|.+++.+. +++.+.......           
T Consensus       276 D~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~  355 (668)
T 1kv9_A          276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLAT  355 (668)
T ss_dssp             CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTT
T ss_pred             cCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccccc
Confidence            9999999888865321         1122233333332223344778999998654 455443222111           


Q ss_pred             -cc------------------------eEEEEeCCCCCEEEEEe------------------------------------
Q 014977          217 -SH------------------------IACFTLTLDGLLLATAS------------------------------------  235 (415)
Q Consensus       217 -~~------------------------i~~l~~sp~g~~l~s~s------------------------------------  235 (415)
                       .+                        -..++++|+..+++...                                    
T Consensus       356 g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~  435 (668)
T 1kv9_A          356 GRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAV  435 (668)
T ss_dssp             CCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGG
T ss_pred             CCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCC
Confidence             00                        01257777766655421                                    


Q ss_pred             CCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977          236 TRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       236 ~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                      .+|. |..||+.+|+.+..+...   .+.....+...+.+++.++.||.|+.||.++++..
T Consensus       436 ~~g~-l~A~D~~tG~~~W~~~~~---~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l  492 (668)
T 1kv9_A          436 VSGA-LLAWDPVKQKAAWKVPYP---THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL  492 (668)
T ss_dssp             CEEE-EEEEETTTTEEEEEEEES---SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             ccce-EEEEeCCCCcEEEEccCC---CCCcCceeEeCCCEEEEECCcccchhhhhhcChhh
Confidence            2377 999999999998877642   22333334456788899999999999999988743

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.73  E-value=1e-08  Score=95.17  Aligned_cols=218  Identities=11%  Similarity=0.024  Sum_probs=114.0

Q ss_pred             CCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEcc
Q 014977           55 DYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFR  133 (415)
Q Consensus        55 ~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~  133 (415)
                      ++..+++++ |+.|+.||..+++....... .   .+.+..+..++..++.++.|     +.|+.||..+|+.+..+...
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~---~~~s~p~~~~g~~~v~~s~d-----g~l~a~d~~tG~~~w~~~~~   78 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-D---PVLQVPTHVEEPAFLPDPND-----GSLYTLGSKNNEGLTKLPFT   78 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC-C---CSCCCC-----CCEEECTTT-----CCEEEC-----CCSEECSCC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC-C---CceecceEcCCCEEEEeCCC-----CEEEEEECCCCceeeeeecc
Confidence            467888888 99999999999887776554 1   22222233455556665665     99999999999877665421


Q ss_pred             --Ccee-EEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEc-CCc
Q 014977          134 --SDVR-SVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHF-GLN  207 (415)
Q Consensus       134 --~~i~-~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~-~~~  207 (415)
                        ..+. ...+..++.+++  .++.|+.||..+|+.+..+..+..    ..+++  .+..+++ ++.++.|+.|+. +++
T Consensus        79 ~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~----~~~~p--~~~~v~~-~~~dg~v~a~d~~tG~  151 (369)
T 2hz6_A           79 IPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA----DSLSP--STSLLYL-GRTEYTITMYDTKTRE  151 (369)
T ss_dssp             HHHHHTTCSCC-----CCCCEEEEEEEEECCC----------------------------EEE-EEEEEEEECCCSSSSS
T ss_pred             CccccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc----ccccc--cCCEEEE-EecCCEEEEEECCCCC
Confidence              1111 111113444333  688999999999998877765431    22333  3444544 567888988775 455


Q ss_pred             ceEEEecCccceEEEEeCCCC---CEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccE-EEEEeCCCCCEEEE--EeC
Q 014977          208 MIKLINAHDSHIACFTLTLDG---LLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEI-YSIALSPNVQWLAV--ASD  281 (415)
Q Consensus       208 ~~~~~~~~~~~i~~l~~sp~g---~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v-~~l~~spdg~~l~s--~s~  281 (415)
                      .+..+..+.  ....++.++.   ..+++++.+|. |+.||..+|+.+..+..   ..++ ....++++|...+.  ...
T Consensus       152 ~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~-v~a~d~~tG~~~W~~~~---~~pv~~~~~~~~dg~~~v~~~~~~  225 (369)
T 2hz6_A          152 LRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGL-VVTVDSESGDVLWIQNY---ASPVVAFYVWQREGLRKVMHINVA  225 (369)
T ss_dssp             CCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCE-EEEECTTTCCEEEEEEC---SSCEEEEEECTTSSCEEECCEEEE
T ss_pred             EEEeEeccc--ccCccccCCccccceEEEECCCCE-EEEEECCCCcEEEEecC---CCceEEEEEecCCceEeccceeec
Confidence            544443221  1223344432   45777888999 99999999999888774   2344 34456677753210  011


Q ss_pred             CCeEEEEEceecc
Q 014977          282 KGTVHIFSLRVRV  294 (415)
Q Consensus       282 dg~i~vwd~~~~~  294 (415)
                      ++.++.+|..+++
T Consensus       226 ~~~l~~ld~~tG~  238 (369)
T 2hz6_A          226 VETLRYLTFMSGE  238 (369)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             ccceeeeehhcCC
Confidence            4457777777665

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.72  E-value=1.2e-05  Score=78.91  Aligned_cols=233  Identities=7%  Similarity=-0.039  Sum_probs=134.4

Q ss_pred             EEEEe-CCcEEEEEccCCceeEEEeccCCC--eeEEE-EeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccC
Q 014977           59 FAAGT-SCGFRIYNCEPFKETFRRDLKSGG--FRIVE-MLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRS  134 (415)
Q Consensus        59 la~g~-d~~v~iw~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~  134 (415)
                      +++++ ++.+.-+|.++++.+.+..+....  ..+.. .... ++.+++..+.+..-.++.|..+|.++|+.+..+....
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~  202 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATG  202 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSS
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCC
Confidence            66776 899999999998887776542210  01110 0111 4555554431000012899999999999999887332


Q ss_pred             ce---------------------------------------eEEEEcCCe-EEEE--eC----------------CeEEE
Q 014977          135 DV---------------------------------------RSVKLSRDR-IVVV--LE----------------HKIYV  156 (415)
Q Consensus       135 ~i---------------------------------------~~l~~~~~~-~~~~--~d----------------~~i~i  156 (415)
                      ..                                       ..+++.++. .+++  .+                +.|..
T Consensus       203 ~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~A  282 (599)
T 1w6s_A          203 PDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFG  282 (599)
T ss_dssp             CHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEE
T ss_pred             CccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEE
Confidence            21                                       123444433 3333  22                38999


Q ss_pred             EEcCCceeeeEEeccCCCc-------ceEEEecC-CCc--eEEEEeCCccCeEEEEEc-CCcceEEEecCc---------
Q 014977          157 YSFVDLKLLHQIETLANLR-------GLCCLSHH-SST--SVLACPGLQRGQVRIEHF-GLNMIKLINAHD---------  216 (415)
Q Consensus       157 wd~~~~~~~~~~~~~~~~~-------~~~~~~~~-~~~--~~l~~~g~~dg~v~i~~~-~~~~~~~~~~~~---------  216 (415)
                      +|..+++.+..++...+..       ..+-+... .++  ..+++.++.+|.+++.+. +++.+.......         
T Consensus       283 ld~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~  362 (599)
T 1w6s_A          283 RDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVD  362 (599)
T ss_dssp             EETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEEC
T ss_pred             EeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccc
Confidence            9999999988876543211       11112111 233  123334668898888554 455544433110         


Q ss_pred             ----cce--------------------------EEEEeCCCCCEEEEEe-------------------------------
Q 014977          217 ----SHI--------------------------ACFTLTLDGLLLATAS-------------------------------  235 (415)
Q Consensus       217 ----~~i--------------------------~~l~~sp~g~~l~s~s-------------------------------  235 (415)
                          .++                          ..++++|+..++++..                               
T Consensus       363 ~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p  442 (599)
T 1w6s_A          363 LKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGP  442 (599)
T ss_dssp             TTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECT
T ss_pred             cCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCC
Confidence                111                          2356777666554421                               


Q ss_pred             --------CCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977          236 --------TRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       236 --------~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                              .+|. |..||+.+|+.+.+....   .+...-.+...+.+++.++.||.|+.||.++++..
T Consensus       443 ~~~~~~~~~~G~-l~A~D~~tG~~~W~~~~~---~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~l  507 (599)
T 1w6s_A          443 KGDRQNYEGLGQ-IKAYNAITGDYKWEKMER---FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLL  507 (599)
T ss_dssp             TSBTTTTBCCEE-EEEECTTTCCEEEEEEES---SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             cCCcccCCCcCe-EEEEECCCCCEEeEecCC---CCccCcceEecCCEEEEECCCCeEEEEECCCCCEE
Confidence                    3467 999999999988877632   11111112235667778999999999999999853

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.68  E-value=4.5e-05  Score=68.38  Aligned_cols=227  Identities=8%  Similarity=0.010  Sum_probs=133.9

Q ss_pred             CceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCC
Q 014977           45 IELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ  123 (415)
Q Consensus        45 ~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~  123 (415)
                      .....++|+++|+++++.. ++.|..|+.+.. ......   .......+.+.+++.++++....   ....|..+|..+
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~---~~~~p~gia~~~dG~l~vad~~~---~~~~v~~~d~~~  104 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT---VEGKVSGLAFTSNGDLVATGWNA---DSIPVVSLVKSD  104 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE---CSSEEEEEEECTTSCEEEEEECT---TSCEEEEEECTT
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe---CCCCceeEEEcCCCcEEEEeccC---CcceEEEEcCCC
Confidence            4678999999999777765 888888887652 222222   23357778888888766654321   003477778778


Q ss_pred             CCEEEEEEc--cCceeEEEEcCCeEEEE---eCCeEEEEEcCCcee-eeEEec-------cCCCcceEEEecCCCceEEE
Q 014977          124 SRCIGEFAF--RSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKL-LHQIET-------LANLRGLCCLSHHSSTSVLA  190 (415)
Q Consensus       124 ~~~~~~~~~--~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~l~  190 (415)
                      ++.......  ......++..+++..++   .++.|+++|...++. +.....       .........+++  ++..|.
T Consensus       105 g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~--dg~~ly  182 (306)
T 2p4o_A          105 GTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKR--FGNFLY  182 (306)
T ss_dssp             SCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEE--ETTEEE
T ss_pred             CeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCc--CCCEEE
Confidence            876544332  22334555566665554   368899999765421 111110       011112334444  444454


Q ss_pred             EeCCccCeEEEEEcCC--c--ceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEE
Q 014977          191 CPGLQRGQVRIEHFGL--N--MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYS  266 (415)
Q Consensus       191 ~~g~~dg~v~i~~~~~--~--~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~  266 (415)
                      ++....+.|..++...  .  ....+.. ......++++++|+++++....+. |.++|.. ++..............++
T Consensus       183 v~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~-V~~~~~~-G~~~~~~~~~~~~~~p~~  259 (306)
T 2p4o_A          183 VSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNS-VVRIAPD-RSTTIIAQAEQGVIGSTA  259 (306)
T ss_dssp             EEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCC-EEEECTT-CCEEEEECGGGTCTTEEE
T ss_pred             EEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCe-EEEECCC-CCEEEEeecccccCCceE
Confidence            4555677888866553  1  1122211 134567899999987776666778 9999964 665322111112246889


Q ss_pred             EEeC---CCCCEEEEEeCCC
Q 014977          267 IALS---PNVQWLAVASDKG  283 (415)
Q Consensus       267 l~~s---pdg~~l~s~s~dg  283 (415)
                      ++|.   |+++.|++++..+
T Consensus       260 ~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          260 VAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             EEECCSTTTTTEEEEEECTT
T ss_pred             EEEecccCCCCEEEEECCCC
Confidence            9998   8988877766544

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.64  E-value=3e-05  Score=66.84  Aligned_cols=181  Identities=9%  Similarity=0.003  Sum_probs=117.2

Q ss_pred             CceEEEEEeCCCCEEEEEe-CC--cEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEEC
Q 014977           45 IELISVSWNQDYGCFAAGT-SC--GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD  121 (415)
Q Consensus        45 ~~V~~l~~sp~g~~la~g~-d~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~  121 (415)
                      .....+.|+ ++.++.+.+ +|  .|+++|+++++......+ ........+....+..+.++.. +     +.+.++|.
T Consensus        43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l-~~~~FgeGit~~g~~ly~ltw~-~-----~~v~v~D~  114 (262)
T 3nol_A           43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIEL-GKRYFGEGISDWKDKIVGLTWK-N-----GLGFVWNI  114 (262)
T ss_dssp             CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEEC-CTTCCEEEEEEETTEEEEEESS-S-----SEEEEEET
T ss_pred             cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEec-CCccceeEEEEeCCEEEEEEee-C-----CEEEEEEC
Confidence            335889998 666555555 55  899999999887776665 3333333455566666666543 3     99999999


Q ss_pred             CCCCEEEEEEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccC--CCc-ceEEEecCCCceEEEEeCCc
Q 014977          122 HQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLA--NLR-GLCCLSHHSSTSVLACPGLQ  195 (415)
Q Consensus       122 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~l~~~g~~  195 (415)
                      .+.+.+.++.....=..++.  ++..+.   .++.|.++|..+.+.+..+....  .++ ....+.+. ++.+.+. ...
T Consensus       115 ~t~~~~~ti~~~~eG~glt~--dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan-~w~  190 (262)
T 3nol_A          115 RNLRQVRSFNYDGEGWGLTH--NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFAN-VWQ  190 (262)
T ss_dssp             TTCCEEEEEECSSCCCCEEE--CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEE-ETT
T ss_pred             ccCcEEEEEECCCCceEEec--CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEE-Ecc
Confidence            99999999986543344554  444333   35679999999999888876532  121 22234443 4555544 334


Q ss_pred             cCeEEE-EEcCCcceEEEecC------------ccceEEEEeCCCCCEEEEEeCC
Q 014977          196 RGQVRI-EHFGLNMIKLINAH------------DSHIACFTLTLDGLLLATASTR  237 (415)
Q Consensus       196 dg~v~i-~~~~~~~~~~~~~~------------~~~i~~l~~sp~g~~l~s~s~d  237 (415)
                      +..|.+ +..+++.+..+...            ....+.|+|+|+++.|++.+..
T Consensus       191 ~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          191 TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence            556665 55566666666532            1345889999998877776654

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.64  E-value=2e-06  Score=80.45  Aligned_cols=99  Identities=13%  Similarity=0.055  Sum_probs=68.0

Q ss_pred             CeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE--e-----------CCeEEEEEcCCceeeeEEecc-CCC----c
Q 014977          114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--L-----------EHKIYVYSFVDLKLLHQIETL-ANL----R  175 (415)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~-----------d~~i~iwd~~~~~~~~~~~~~-~~~----~  175 (415)
                      +.|.++|..+++.+.++.....- .+.++||++.+.  .           ++.|.++|..+++.+..+... ...    .
T Consensus        99 ~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~  177 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGT  177 (426)
T ss_dssp             EEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSC
T ss_pred             CeEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCC
Confidence            69999999999999999854444 899999998665  2           457999999999998887643 100    1


Q ss_pred             ceEEEecCCCceEEEEeCCc-cCeEEEEEc-CCcceEEEe
Q 014977          176 GLCCLSHHSSTSVLACPGLQ-RGQVRIEHF-GLNMIKLIN  213 (415)
Q Consensus       176 ~~~~~~~~~~~~~l~~~g~~-dg~v~i~~~-~~~~~~~~~  213 (415)
                      ....+.+++++++++++... ++.|.+.+. ..+.+..+.
T Consensus       178 ~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~  217 (426)
T 3c75_H          178 YQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLD  217 (426)
T ss_dssp             CGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred             CcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEE
Confidence            12234455566666664433 577888554 445555554

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.63  E-value=0.00017  Score=73.81  Aligned_cols=236  Identities=10%  Similarity=0.082  Sum_probs=151.9

Q ss_pred             CCceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEecc------CCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977           44 EIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLK------SGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (415)
Q Consensus        44 ~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~  117 (415)
                      ...|.++...++|.+.+...++.+.+|+..+..... ....      -....+.++....++.+.++..       +-|.
T Consensus       214 ~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-------~Gl~  285 (795)
T 4a2l_A          214 TKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKN-YLHSPSNPKSISSNYIRSLAMDSQNRLWIGTF-------NDLN  285 (795)
T ss_dssp             CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEE-ECCCTTCTTSCSCSBEEEEEECTTSCEEEEES-------SCEE
T ss_pred             CCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEE-eecCCCCccccCCCeEEEEEEcCCCCEEEEeC-------Chhh
Confidence            457888888888876655446678889977643221 1110      1235678888888777666543       4588


Q ss_pred             EEECCCCCEEEEEE--------ccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEecc-----CCCcceEEEec
Q 014977          118 IWDDHQSRCIGEFA--------FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETL-----ANLRGLCCLSH  182 (415)
Q Consensus       118 vwd~~~~~~~~~~~--------~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~  182 (415)
                      +||..+++......        ....|.++...++|.+.+  .++.|..|+..+.+.. .+...     .....+.++..
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~l~~~~V~~i~~  364 (795)
T 4a2l_A          286 IYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFK-NIRNIPYKNSLSDNVVSCIVE  364 (795)
T ss_dssp             EEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSE-EECCCTTSSSCSCSSEEEEEE
T ss_pred             eEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccce-EEcCCCCCCCCCCCeeEEEEE
Confidence            89977665433221        135699999999888777  4578999987554322 22111     01224677888


Q ss_pred             CCCceEEEEeCCccCeEEEEEcCCcceEEEec---------CccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEE
Q 014977          183 HSSTSVLACPGLQRGQVRIEHFGLNMIKLINA---------HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQ  253 (415)
Q Consensus       183 ~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~---------~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~  253 (415)
                      +.++.+.+  |..++-|..++........+..         ....|.++...++|++|..|+.++. |.+||..+++.. 
T Consensus       365 d~~g~lWi--Gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~G-l~~~d~~~~~~~-  440 (795)
T 4a2l_A          365 DKDKNLWI--GTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGG-LSILHRNSGQVE-  440 (795)
T ss_dssp             CTTSCEEE--EESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTE-EEEEETTTCCEE-
T ss_pred             CCCCCEEE--EECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCc-eeEEeCCCCcEE-
Confidence            87776654  4455567766665544444421         2356889999899986677787788 999998877654 


Q ss_pred             EEecC---CCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977          254 EVRRG---VDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (415)
Q Consensus       254 ~~~~~---~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  294 (415)
                      .+...   .....|.++...++|++.+. +.+| |.+|+.++++
T Consensus       441 ~~~~~~~~l~~~~v~~i~~d~~g~lwig-t~~G-l~~~~~~~~~  482 (795)
T 4a2l_A          441 NFNQRNSQLVNENVYAILPDGEGNLWLG-TLSA-LVRFNPEQRS  482 (795)
T ss_dssp             EECTTTSCCSCSCEEEEEECSSSCEEEE-ESSC-EEEEETTTTE
T ss_pred             EeecCCCCcCCCeeEEEEECCCCCEEEE-ecCc-eeEEeCCCCe
Confidence            33210   12347999999988885554 4455 8889977654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.54  E-value=3.3e-05  Score=66.59  Aligned_cols=181  Identities=8%  Similarity=-0.003  Sum_probs=116.0

Q ss_pred             CceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCC
Q 014977           45 IELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ  123 (415)
Q Consensus        45 ~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~  123 (415)
                      .....+.|+. +.++.+.+ +|.|+++|+++++..... + ........+....+..+.++.. +     +.+.+||..+
T Consensus        55 ~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~g~~Ly~ltw~-~-----~~v~V~D~~T  125 (268)
T 3nok_A           55 AFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASDGERLYQLTWT-E-----GLLFTWSGMP  125 (268)
T ss_dssp             CCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEECSSCEEEEESS-S-----CEEEEEETTT
T ss_pred             cccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEeCCEEEEEEcc-C-----CEEEEEECCc
Confidence            3457888873 44444444 888999999998776665 5 3333333456666666666543 3     9999999999


Q ss_pred             CCEEEEEEccCceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEeccCCCc---ceEEEecCCCceEEEEeCCccCeE
Q 014977          124 SRCIGEFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLR---GLCCLSHHSSTSVLACPGLQRGQV  199 (415)
Q Consensus       124 ~~~~~~~~~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~g~~dg~v  199 (415)
                      .+.+.++.....-..++......++. .++.|+++|..+.+.+..+.....+.   ....+.+. ++.+.+. ...+..|
T Consensus       126 l~~~~ti~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyan-vw~s~~I  203 (268)
T 3nok_A          126 PQRERTTRYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYAN-IWHSSDV  203 (268)
T ss_dssp             TEEEEEEECSSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEE-ETTCSEE
T ss_pred             CcEEEEEeCCCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEE-ECCCCeE
Confidence            99999999655545666554333333 47889999999999888876533221   22334444 4555544 3345566


Q ss_pred             EE-EEcCCcceEEEecC-------------ccceEEEEeCCCCCEEEEEeC
Q 014977          200 RI-EHFGLNMIKLINAH-------------DSHIACFTLTLDGLLLATAST  236 (415)
Q Consensus       200 ~i-~~~~~~~~~~~~~~-------------~~~i~~l~~sp~g~~l~s~s~  236 (415)
                      .+ +..+++.+..+...             ....+.|+++|+++.|++.+.
T Consensus       204 ~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          204 LEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             EEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             EEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            55 55566666665432             135688999998765555443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.54  E-value=2.9e-05  Score=76.06  Aligned_cols=193  Identities=9%  Similarity=0.022  Sum_probs=108.9

Q ss_pred             CCCEEEEEe-CCcEEEEEc-cCCceeEEEeccCCCe---------eEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCC
Q 014977           55 DYGCFAAGT-SCGFRIYNC-EPFKETFRRDLKSGGF---------RIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ  123 (415)
Q Consensus        55 ~g~~la~g~-d~~v~iw~~-~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~  123 (415)
                      ++..++... ++.|.-+|. ++++.+.+..+.....         ....+... ++.+++.. .+     +.|..+|..+
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~~-~d-----g~l~alD~~t  134 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG-AGQIVKKQ-AN-----GHLLALDAKT  134 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE-TTEEEEEC-TT-----SEEEEEETTT
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEE-CCEEEEEe-CC-----CEEEEEECCC
Confidence            444455555 688999999 8888877765422110         00011222 34444443 33     8999999999


Q ss_pred             CCEEEEEEccC-----cee-EEEEcCCeEEEE--e------CCeEEEEEcCCceeeeEEeccCCCcc-------------
Q 014977          124 SRCIGEFAFRS-----DVR-SVKLSRDRIVVV--L------EHKIYVYSFVDLKLLHQIETLANLRG-------------  176 (415)
Q Consensus       124 ~~~~~~~~~~~-----~i~-~l~~~~~~~~~~--~------d~~i~iwd~~~~~~~~~~~~~~~~~~-------------  176 (415)
                      |+.+..+....     .+. ...+. ++.+++  .      ++.|+.+|..+++.+..+........             
T Consensus       135 G~~~W~~~~~~~~~~~~~~~~P~v~-~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~  213 (571)
T 2ad6_A          135 GKINWEVEVCDPKVGSTLTQAPFVA-KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPH  213 (571)
T ss_dssp             CCEEEEEECCCGGGTCBCCSCCEEE-TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred             CCEEEEecCCCCCccceeccCCEEE-CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccc
Confidence            99998887322     222 11222 455555  2      68999999999999887754321100             


Q ss_pred             -----------------------eEEEecCCCceEEEE-eCC----------cc----CeEEE-EEcCCcceEEEecC--
Q 014977          177 -----------------------LCCLSHHSSTSVLAC-PGL----------QR----GQVRI-EHFGLNMIKLINAH--  215 (415)
Q Consensus       177 -----------------------~~~~~~~~~~~~l~~-~g~----------~d----g~v~i-~~~~~~~~~~~~~~--  215 (415)
                                             ...++.+++...+.+ ++.          .+    +.|.. +..+++.+..++..  
T Consensus       214 ~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~  293 (571)
T 2ad6_A          214 YGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPH  293 (571)
T ss_dssp             GCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTT
T ss_pred             ccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCC
Confidence                                   001222332223332 221          01    23444 44455665555432  


Q ss_pred             c--------cceEEEEeCCCCC---EEEEEeCCCcEEEEEECCCCcEEEEEec
Q 014977          216 D--------SHIACFTLTLDGL---LLATASTRGTLIRIFNTVDGTRLQEVRR  257 (415)
Q Consensus       216 ~--------~~i~~l~~sp~g~---~l~s~s~dg~~I~vwd~~~~~~~~~~~~  257 (415)
                      .        .++ -+....+|+   .++.++.+|. ++++|..+|+.+..+..
T Consensus       294 d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~-l~~lD~~tG~~~w~~~~  344 (571)
T 2ad6_A          294 DEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGI-LYTLNRENGNLIVAEKV  344 (571)
T ss_dssp             CSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSE-EEEEETTTCCEEEEEES
T ss_pred             cccccccCCCCE-EEecccCCcEEEEEEEeCCCcE-EEEEECCCCCEEeeecc
Confidence            1        111 122224674   5778888999 99999999999887764

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.54  E-value=0.00011  Score=62.70  Aligned_cols=183  Identities=10%  Similarity=0.025  Sum_probs=116.6

Q ss_pred             CceEEEEEeCCCCEEEEEe-C--CcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEEC
Q 014977           45 IELISVSWNQDYGCFAAGT-S--CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD  121 (415)
Q Consensus        45 ~~V~~l~~sp~g~~la~g~-d--~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~  121 (415)
                      .....+.|++ +.++.+.+ .  ..|+++|+++++......+.. ......+....+..+.++.. +     +.+.++|.
T Consensus        21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~-~~fgeGi~~~~~~ly~ltw~-~-----~~v~v~D~   92 (243)
T 3mbr_X           21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPP-PYFGAGIVAWRDRLIQLTWR-N-----HEGFVYDL   92 (243)
T ss_dssp             CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESS-S-----SEEEEEET
T ss_pred             cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC-CcceeEEEEeCCEEEEEEee-C-----CEEEEEEC
Confidence            4467999987 44444444 3  489999999988777666633 32233445556666665543 3     99999999


Q ss_pred             CCCCEEEEEEccCceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEeccCC--Cc-ceEEEecCCCceEEEEeCCccC
Q 014977          122 HQSRCIGEFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLAN--LR-GLCCLSHHSSTSVLACPGLQRG  197 (415)
Q Consensus       122 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~l~~~g~~dg  197 (415)
                      .+.+.+.++.....-..++......++. .++.|.++|..+.+.+..+....+  ++ ....+.+. ++.+.+..- .+.
T Consensus        93 ~tl~~~~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw-~s~  170 (243)
T 3mbr_X           93 ATLTPRARFRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVW-LTS  170 (243)
T ss_dssp             TTTEEEEEEECSSCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET-TTT
T ss_pred             CcCcEEEEEeCCCCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEEC-CCC
Confidence            9999999999655545666543323333 567899999999998888765332  11 22334444 455555433 344


Q ss_pred             eEEE-EEcCCcceEEEecC-------------ccceEEEEeCCCCCEEEEEeCC
Q 014977          198 QVRI-EHFGLNMIKLINAH-------------DSHIACFTLTLDGLLLATASTR  237 (415)
Q Consensus       198 ~v~i-~~~~~~~~~~~~~~-------------~~~i~~l~~sp~g~~l~s~s~d  237 (415)
                      .|.+ +..+++.+..+...             ....+.|+++|+++.|++.+..
T Consensus       171 ~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~  224 (243)
T 3mbr_X          171 RIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR  224 (243)
T ss_dssp             EEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred             eEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence            5554 55666666665521             1356889999988776666543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.49  E-value=4.9e-05  Score=73.19  Aligned_cols=184  Identities=10%  Similarity=0.004  Sum_probs=120.3

Q ss_pred             CeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE--ccCceeEEEE-c-CCeEEEE-e--------------------CC
Q 014977           98 NILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA--FRSDVRSVKL-S-RDRIVVV-L--------------------EH  152 (415)
Q Consensus        98 ~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~--~~~~i~~l~~-~-~~~~~~~-~--------------------d~  152 (415)
                      |+.++.....+    ++.|.+.|+.+.++...+.  ....+..+++ + |++.++. .                    ++
T Consensus       100 DG~~lfVnd~~----~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~  175 (595)
T 1fwx_A          100 DGRFLFMNDKA----NTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN  175 (595)
T ss_dssp             EEEEEEEEETT----TTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEE
T ss_pred             CCCEEEEEcCC----CCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCc
Confidence            55544443332    2789999999999888665  4567888887 4 7877766 2                    24


Q ss_pred             eEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCcc--------------Ce--------------------
Q 014977          153 KIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR--------------GQ--------------------  198 (415)
Q Consensus       153 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d--------------g~--------------------  198 (415)
                      .+.+.|..+.+.+.++....++ ..+.+++  ++.++++++...              ..                    
T Consensus       176 ~vtvID~~t~~v~~qI~Vgg~p-d~~~~sp--dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~  252 (595)
T 1fwx_A          176 VFTAVDADKWEVAWQVLVSGNL-DNCDADY--EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE  252 (595)
T ss_dssp             EEEEEETTTTEEEEEEEESSCC-CCEEECS--SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred             eEEEEECCCCeEEEEEEeCCCc-cceEECC--CCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeE
Confidence            7999999999998888754443 3344555  455665544322              12                    


Q ss_pred             ---EEEEEcCC---cc-eEEEecCccceEEEEeCCCCCEEEEEeC-CCcEEEEEECCCCc------------EEEEEecC
Q 014977          199 ---VRIEHFGL---NM-IKLINAHDSHIACFTLTLDGLLLATAST-RGTLIRIFNTVDGT------------RLQEVRRG  258 (415)
Q Consensus       199 ---v~i~~~~~---~~-~~~~~~~~~~i~~l~~sp~g~~l~s~s~-dg~~I~vwd~~~~~------------~~~~~~~~  258 (415)
                         |.+.+...   +. +..+.. .....++.++|||+++++++. +.. |.++|+.+.+            ...++.. 
T Consensus       253 i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~-VsVid~~~~~~~~~~~l~~~~~v~~~v~v-  329 (595)
T 1fwx_A          253 LNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPT-VTVLDVTRFDAVFYENADPRSAVVAEPEL-  329 (595)
T ss_dssp             ETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSB-EEEEEGGGHHHHHHSCCCGGGGEEECCBC-
T ss_pred             ECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCe-EEEEECcccccccccccCcccceEEEcCC-
Confidence               22322221   11 222322 123457899999998877765 556 9999998653            3444442 


Q ss_pred             CCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceec
Q 014977          259 VDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR  293 (415)
Q Consensus       259 ~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~  293 (415)
                        ......++|+|+|...++.-.|++|.+||+++.
T Consensus       330 --G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a  362 (595)
T 1fwx_A          330 --GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDA  362 (595)
T ss_dssp             --CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHH
T ss_pred             --CCCcceEEECCCCeEEEEEecCCcEEEEEhhHh
Confidence              335789999999944456667999999999883

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.48  E-value=1.7e-06  Score=79.62  Aligned_cols=210  Identities=9%  Similarity=-0.077  Sum_probs=116.1

Q ss_pred             EEEEeCCCCEEEEEe-----------CCcEEEEEccCCceeEEEeccCC-----CeeEEEEeeeCCeEEEEecCCCCCCC
Q 014977           49 SVSWNQDYGCFAAGT-----------SCGFRIYNCEPFKETFRRDLKSG-----GFRIVEMLFRCNILALVGAGDNSQYP  112 (415)
Q Consensus        49 ~l~~sp~g~~la~g~-----------d~~v~iw~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~s~~~d~~~~  112 (415)
                      .+.++||+++++++.           ++.|.+||..+.+......+.+.     ......+.++|++..++.+...   .
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~---~  145 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFG---S  145 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECS---S
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccC---C
Confidence            799999999888874           57899999999887666544211     1223457788988665554321   0


Q ss_pred             CCeEEE--EECCCCCEEEEEEccCce--------eEEEEcCCeE------------------------------------
Q 014977          113 PTKVII--WDDHQSRCIGEFAFRSDV--------RSVKLSRDRI------------------------------------  146 (415)
Q Consensus       113 ~~~i~v--wd~~~~~~~~~~~~~~~i--------~~l~~~~~~~------------------------------------  146 (415)
                      ...|.+  +|+.+   +..+...+.+        .-+.+++++.                                    
T Consensus       146 ~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~  222 (368)
T 1mda_H          146 SAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYP  222 (368)
T ss_dssp             SCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTT
T ss_pred             CCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccC
Confidence            167888  88766   3334311100        0011111111                                    


Q ss_pred             --EEE--eCCeEEEEEcCCc--eeeeEEecc----------CCCcceEEEecCCCceEEEEe-C-C-----ccCeEEEEE
Q 014977          147 --VVV--LEHKIYVYSFVDL--KLLHQIETL----------ANLRGLCCLSHHSSTSVLACP-G-L-----QRGQVRIEH  203 (415)
Q Consensus       147 --~~~--~d~~i~iwd~~~~--~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~~~-g-~-----~dg~v~i~~  203 (415)
                        ++.  . +.+.+.|+...  +.+..+...          ......+.++++.+..+++.. . .     .++.. +++
T Consensus       223 ~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~-ViD  300 (368)
T 1mda_H          223 GMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTS-SVT  300 (368)
T ss_dssp             TEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEE-EEE
T ss_pred             CEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEE-EEE
Confidence              111  2 44555555332  111111110          000112445555433222221 1 1     23444 644


Q ss_pred             -cCCcceEEEecCccceEEEEeCCCCC-EEEEEe-CCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCC
Q 014977          204 -FGLNMIKLINAHDSHIACFTLTLDGL-LLATAS-TRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSP  271 (415)
Q Consensus       204 -~~~~~~~~~~~~~~~i~~l~~sp~g~-~l~s~s-~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp  271 (415)
                       .+.+.+..+.... ....|+|+|||+ ++++.. .++. |.++|+.+++.+.++..+   .....+++.+
T Consensus       301 ~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~-VsVID~~t~kvv~~I~vg---~~P~~i~~~~  366 (368)
T 1mda_H          301 ASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEV-LDIYDAASDQDQSSVELD---KGPESLSVQN  366 (368)
T ss_dssp             SSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTE-EEEEESSSCEEEEECCCC---SCCCEEECCC
T ss_pred             CCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCe-EEEEECCCCcEEEEEECC---CCCCEEEeec
Confidence             4455566555433 578999999998 456666 5888 999999999999998853   2345666654

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.46  E-value=9.6e-05  Score=73.86  Aligned_cols=191  Identities=14%  Similarity=0.122  Sum_probs=110.4

Q ss_pred             CCEEEEEe-CCcEEEEEccCCceeEEEeccCCCe--------e-EEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCC
Q 014977           56 YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGF--------R-IVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR  125 (415)
Q Consensus        56 g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~  125 (415)
                      +..+++++ ++.|.-+|..+++.+.+........        . ...+... ++.+++. ..+     +.|..+|..+|+
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~-~~d-----g~l~alD~~tG~  138 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW-GDKVYVG-TLD-----GRLIALDAKTGK  138 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE-BTEEEEE-CTT-----SEEEEEETTTCC
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEE-CCEEEEE-cCC-----CEEEEEECCCCC
Confidence            34555555 8889999998888877765421110        0 0011222 2344443 334     999999999999


Q ss_pred             EEEEEEcc-----CceeE-EEEcCCeEEEE--e------CCeEEEEEcCCceeeeEEeccC-CCcc--------------
Q 014977          126 CIGEFAFR-----SDVRS-VKLSRDRIVVV--L------EHKIYVYSFVDLKLLHQIETLA-NLRG--------------  176 (415)
Q Consensus       126 ~~~~~~~~-----~~i~~-l~~~~~~~~~~--~------d~~i~iwd~~~~~~~~~~~~~~-~~~~--------------  176 (415)
                      .+..+...     ..+.. ..+. ++.+++  .      ++.|+.+|..+|+.+..+.... .+..              
T Consensus       139 ~~W~~~~~~~~~~~~~~~~P~v~-~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~  217 (668)
T 1kv9_A          139 AIWSQQTTDPAKPYSITGAPRVV-KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTW  217 (668)
T ss_dssp             EEEEEECSCTTSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTC
T ss_pred             EeeeeccCCCCCcceecCCCEEE-CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccC
Confidence            99888732     11111 1122 455555  2      4899999999999988875321 1100              


Q ss_pred             --------------eEEEecCCCceEEEEeCCccC-------------------eEEEEE-cCCcceEEEec--Cc----
Q 014977          177 --------------LCCLSHHSSTSVLACPGLQRG-------------------QVRIEH-FGLNMIKLINA--HD----  216 (415)
Q Consensus       177 --------------~~~~~~~~~~~~l~~~g~~dg-------------------~v~i~~-~~~~~~~~~~~--~~----  216 (415)
                                    ....+.+++...+++ +..++                   .|..++ .+++.+..++.  |.    
T Consensus       218 ~g~~~w~~~~gg~~w~~~a~d~~~~~vy~-~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~  296 (668)
T 1kv9_A          218 QGDQYWKLGGGGTVWDSMAYDPELDLLYV-GTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDF  296 (668)
T ss_dssp             CSSCHHHHCEECCCCSCEEEETTTTEEEE-ECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCC
T ss_pred             CccceeeeCCCCccccceEEcCCCCEEEE-eCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccc
Confidence                          011233443334443 33444                   255444 45566655553  22    


Q ss_pred             ---cceEEEEeCCCCC---EEEEEeCCCcEEEEEECCCCcEEEEEe
Q 014977          217 ---SHIACFTLTLDGL---LLATASTRGTLIRIFNTVDGTRLQEVR  256 (415)
Q Consensus       217 ---~~i~~l~~sp~g~---~l~s~s~dg~~I~vwd~~~~~~~~~~~  256 (415)
                         .+.....+..+|+   .|+.++.+|. ++++|..+|+.+..+.
T Consensus       297 ~~~~~~~~~d~~~~G~~~~~v~~~~~~G~-l~~lD~~tG~~l~~~~  341 (668)
T 1kv9_A          297 TATQQITLAELNIDGKPRKVLMQAPKNGF-FYVLDRTNGKLISAEK  341 (668)
T ss_dssp             CCCSCEEEEEEEETTEEEEEEEECCTTSE-EEEEETTTCCEEEEEE
T ss_pred             cCCCCcEEEEeccCCcEEEEEEEECCCCE-EEEEECCCCCEecccc
Confidence               2222222333665   6888999999 9999999999986554

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.45  E-value=0.00014  Score=65.58  Aligned_cols=181  Identities=10%  Similarity=0.040  Sum_probs=105.9

Q ss_pred             EEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEc---------------------cCceeEEEEcC-CeEE
Q 014977           90 IVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAF---------------------RSDVRSVKLSR-DRIV  147 (415)
Q Consensus        90 ~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~---------------------~~~i~~l~~~~-~~~~  147 (415)
                      ...+++++++.++..+..+     +.|..|+..+++.. .+..                     ...+..+++.+ ++.+
T Consensus        21 p~~i~~d~~g~~l~v~~~~-----~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l   94 (322)
T 2fp8_A           21 PNSFTFDSTNKGFYTSVQD-----GRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQL   94 (322)
T ss_dssp             CCCEECCTTCSSEEEECTT-----SEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEE
T ss_pred             ceEEEEcCCCCEEEEEcCC-----CeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcE
Confidence            3446677777634444444     88999987765543 2321                     13578899997 7766


Q ss_pred             EE--eCCeEEEEEcCCceeeeEEecc---CCCcceEEEecCC-CceEEEEeCC----------------ccCeEEEEEcC
Q 014977          148 VV--LEHKIYVYSFVDLKLLHQIETL---ANLRGLCCLSHHS-STSVLACPGL----------------QRGQVRIEHFG  205 (415)
Q Consensus       148 ~~--~d~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~l~~~g~----------------~dg~v~i~~~~  205 (415)
                      ++  ..+.|..+|..+++. ..+...   ........+..++ ++.+.++...                .++.|..++..
T Consensus        95 ~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~  173 (322)
T 2fp8_A           95 YIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS  173 (322)
T ss_dssp             EEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT
T ss_pred             EEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCC
Confidence            66  355688888765543 222111   1111345566677 6666554322                13566666665


Q ss_pred             CcceEEEecCccceEEEEeCCCCCEEEEE-eCCCcEEEEEECCCCc--EEEEEecCCCcccEEEEEeCCCCCEEEEEeC
Q 014977          206 LNMIKLINAHDSHIACFTLTLDGLLLATA-STRGTLIRIFNTVDGT--RLQEVRRGVDRAEIYSIALSPNVQWLAVASD  281 (415)
Q Consensus       206 ~~~~~~~~~~~~~i~~l~~sp~g~~l~s~-s~dg~~I~vwd~~~~~--~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~  281 (415)
                      ...+..+...-.....|+++|+|++|+.+ ...+. |.+|++....  ....+..  ..+ ...++++++|++.++...
T Consensus       174 ~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~-I~~~~~~~~~~~~~~~~~~--~~g-P~gi~~d~~G~l~va~~~  248 (322)
T 2fp8_A          174 TKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQ-IVKYWLEGPKKGTAEVLVK--IPN-PGNIKRNADGHFWVSSSE  248 (322)
T ss_dssp             TTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTE-EEEEESSSTTTTCEEEEEE--CSS-EEEEEECTTSCEEEEEEE
T ss_pred             CCEEEEeccCCccCcceEECCCCCEEEEEeCCCCe-EEEEECCCCcCCccceEEe--CCC-CCCeEECCCCCEEEEecC
Confidence            44444333323445679999999866655 45577 9999987421  1222222  223 778999999986666544

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.44  E-value=0.00012  Score=71.83  Aligned_cols=56  Identities=14%  Similarity=0.239  Sum_probs=40.3

Q ss_pred             CCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977          237 RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       237 dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                      +|. |..||+.+|+.+.+.....   ++..-.....+.+++.++.||.++.||.++++..
T Consensus       465 ~G~-l~A~D~~tG~~~W~~~~~~---~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~l  520 (582)
T 1flg_A          465 VGS-LRAMDPVSGKVVWEHKEHL---PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKEL  520 (582)
T ss_dssp             SEE-EEEECTTTCCEEEEEEESS---CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             cce-EEEEECCCCCEEEEecCCC---CCcccceEeCCCEEEEECCCCcEEEEECCCCCEE
Confidence            577 9999999999987776421   2211111224667888999999999999999853

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.44  E-value=0.00028  Score=65.44  Aligned_cols=233  Identities=7%  Similarity=-0.060  Sum_probs=135.5

Q ss_pred             EEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCeEEEEECCCCCEE
Q 014977           49 SVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQSRCI  127 (415)
Q Consensus        49 ~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~  127 (415)
                      +.+..+ ..+|+.+....|+.++++.......  + ........+.|++ ++.++.+....     +.|..+++..+...
T Consensus        81 C~~~~~-~~~l~~~~~~~I~~i~~~~~~~~~~--~-~~~~~~~gl~~d~~~~~ly~~D~~~-----~~I~r~~~~g~~~~  151 (386)
T 3v65_B           81 CKALGP-EPVLLFANRIDIRQVLPHRSEYTLL--L-NNLENAIALDFHHRRELVFWSDVTL-----DRILRANLNGSNVE  151 (386)
T ss_dssp             EEECSS-CCEEEEECBSCEEEECTTSCCCEEE--E-CSCSCEEEEEEETTTTEEEEEETTT-----TEEEEEETTSCCEE
T ss_pred             ECCccc-cceeEeecCccceeeccCCCcEEEE--e-cCCCccEEEEEecCCCeEEEEeCCC-----CcEEEEecCCCCcE
Confidence            333334 3455555666777777765433222  2 3334567888885 55555554444     89999998766544


Q ss_pred             EEEE-ccCceeEEEEcCC-eEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCcc-CeEEE
Q 014977          128 GEFA-FRSDVRSVKLSRD-RIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR-GQVRI  201 (415)
Q Consensus       128 ~~~~-~~~~i~~l~~~~~-~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d-g~v~i  201 (415)
                      ..+. .......+++.+. +.+.+   ..+.|.+.++........+.....  ....++.+|.+..|..+.... +.|..
T Consensus       152 ~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~--~P~giavdp~~g~ly~td~~~~~~I~r  229 (386)
T 3v65_B          152 EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLE--KPRAIALHPMEGTIYWTDWGNTPRIEA  229 (386)
T ss_dssp             EEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCS--CEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred             EEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCC--CCcEEEEEcCCCeEEEeccCCCCEEEE
Confidence            4333 2335567888863 43333   456888888764332222222222  344555555444444444344 67777


Q ss_pred             EEcCCcceEEEe-cCccceEEEEeCCCCCEEEEEeC-CCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEE
Q 014977          202 EHFGLNMIKLIN-AHDSHIACFTLTLDGLLLATAST-RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVA  279 (415)
Q Consensus       202 ~~~~~~~~~~~~-~~~~~i~~l~~sp~g~~l~s~s~-dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~  279 (415)
                      .+.++.....+. ..-.....|+++|++..|+.+.. .+. |..+|+........+..  .......|++ ..+.++++-
T Consensus       230 ~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~-I~~~d~dG~~~~~~~~~--~~~~P~giav-~~~~ly~td  305 (386)
T 3v65_B          230 SSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHV-IERANLDGSHRKAVISQ--GLPHPFAITV-FEDSLYWTD  305 (386)
T ss_dssp             EETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTE-EEEECTTSCSCEEEECS--SCSSEEEEEE-ETTEEEEEE
T ss_pred             EeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCE-EEEEeCCCCeeEEEEEC--CCCCceEEEE-ECCEEEEee
Confidence            777776555543 33445789999987776666554 455 99999864433323332  2335678888 344555566


Q ss_pred             eCCCeEEEEEceecccC
Q 014977          280 SDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       280 s~dg~i~vwd~~~~~~~  296 (415)
                      ...+.|..++..+++..
T Consensus       306 ~~~~~V~~~~~~~G~~~  322 (386)
T 3v65_B          306 WHTKSINSANKFTGKNQ  322 (386)
T ss_dssp             TTTTEEEEEETTTCCSC
T ss_pred             CCCCeEEEEECCCCcce
Confidence            66778888886566543

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.44  E-value=0.00049  Score=62.84  Aligned_cols=234  Identities=7%  Similarity=-0.077  Sum_probs=136.5

Q ss_pred             eEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCeEEEEECCCCC
Q 014977           47 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQSR  125 (415)
Q Consensus        47 V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~i~vwd~~~~~  125 (415)
                      ..|.+..+ ..+|+.+....|+..+++....  ...+ ........+.|++ ++.++.+....     +.|..+++..+.
T Consensus        36 ~~C~~~~~-~~~ll~~~~~~I~~i~~~g~~~--~~~~-~~~~~~~~l~~d~~~~~ly~~D~~~-----~~I~r~~~~g~~  106 (349)
T 3v64_C           36 RSCKALGP-EPVLLFANRIDIRQVLPHRSEY--TLLL-NNLENAIALDFHHRRELVFWSDVTL-----DRILRANLNGSN  106 (349)
T ss_dssp             SCEEESSS-CCEEEEECBSCEEEECTTSCCE--EEEE-CSCSCEEEEEEETTTTEEEEEETTT-----TEEEEEETTSCS
T ss_pred             Cccccccc-CceeEeecccceEEEeCCCCee--EEee-cCCCceEEEEEeccccEEEEEeccC-----CceEEEecCCCC
Confidence            44555555 3456666656677777765332  2222 2334467888885 45555554444     899999987665


Q ss_pred             EEEEEE-ccCceeEEEEcCC-eEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCcc-CeE
Q 014977          126 CIGEFA-FRSDVRSVKLSRD-RIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR-GQV  199 (415)
Q Consensus       126 ~~~~~~-~~~~i~~l~~~~~-~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d-g~v  199 (415)
                      ....+. .......+++.+. +.+..   ..+.|.+.++........+.....  ....++.+|.+..|..+.... +.|
T Consensus       107 ~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~--~P~~iavdp~~g~ly~td~~~~~~I  184 (349)
T 3v64_C          107 VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLE--KPRAIALHPMEGTIYWTDWGNTPRI  184 (349)
T ss_dssp             CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCS--CEEEEEEETTTTEEEEEECSSSCEE
T ss_pred             ceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCC--CcceEEEecCcCeEEEeccCCCCEE
Confidence            444333 2345678888863 44433   457899999764433222222222  345555565444444444444 677


Q ss_pred             EEEEcCCcceEEEe-cCccceEEEEeCCCCCEEEEEeC-CCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEE
Q 014977          200 RIEHFGLNMIKLIN-AHDSHIACFTLTLDGLLLATAST-RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLA  277 (415)
Q Consensus       200 ~i~~~~~~~~~~~~-~~~~~i~~l~~sp~g~~l~s~s~-dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~  277 (415)
                      ...+.++.....+. ..-.....|+++|++..|+.+.. .+. |..+|+........+..  .......|++ .++.+++
T Consensus       185 ~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~-I~~~~~dG~~~~~~~~~--~~~~P~giav-~~~~ly~  260 (349)
T 3v64_C          185 EASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHV-IERANLDGSHRKAVISQ--GLPHPFAITV-FEDSLYW  260 (349)
T ss_dssp             EEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTSCSCEEEECS--SCSSEEEEEE-ETTEEEE
T ss_pred             EEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCE-EEEEeCCCCceEEEEeC--CCCCceEEEE-ECCEEEE
Confidence            77777765554442 23445789999987776666654 455 99999864433323332  2335677888 3445555


Q ss_pred             EEeCCCeEEEEEceeccc
Q 014977          278 VASDKGTVHIFSLRVRVV  295 (415)
Q Consensus       278 s~s~dg~i~vwd~~~~~~  295 (415)
                      +-...+.|..++..+++.
T Consensus       261 td~~~~~V~~~~~~~G~~  278 (349)
T 3v64_C          261 TDWHTKSINSANKFTGKN  278 (349)
T ss_dssp             EETTTTEEEEEETTTCCS
T ss_pred             ecCCCCeEEEEEccCCCc
Confidence            555677788887555554

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.42  E-value=0.00094  Score=60.05  Aligned_cols=226  Identities=7%  Similarity=-0.098  Sum_probs=132.1

Q ss_pred             EEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCeEEEEECCC----CCEEEEEE-
Q 014977           58 CFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQ----SRCIGEFA-  131 (415)
Q Consensus        58 ~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~i~vwd~~~----~~~~~~~~-  131 (415)
                      +|+.+..+.|+..++++......  + ........+.|++ ++.++.+....     +.|..+++..    ......+. 
T Consensus         3 ~ll~~~~~~I~~i~~~~~~~~~~--~-~~~~~p~g~~~d~~~~~ly~~D~~~-----~~I~~~~~~g~~~~~~~~~~~~~   74 (316)
T 1ijq_A            3 YLFFTNRHEVRKMTLDRSEYTSL--I-PNLRNVVALDTEVASNRIYWSDLSQ-----RMICSTQLDRAHGVSSYDTVISR   74 (316)
T ss_dssp             EEEEECBSSEEEEETTSCCCEEE--E-CSCSSEEEEEEETTTTEEEEEETTT-----TEEEEEEC--------CEEEECS
T ss_pred             EEEEECCCeEEEEECCCcceEeh--h-cCCCceEEEEEEeCCCEEEEEECCC-----CcEEEEECCCCCCCcccEEEEeC
Confidence            56666667788889886543222  2 2334567788886 45555555544     8999999775    22222222 


Q ss_pred             ccCceeEEEEcC-CeEE-EE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCcc-CeEEEEEcCC
Q 014977          132 FRSDVRSVKLSR-DRIV-VV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR-GQVRIEHFGL  206 (415)
Q Consensus       132 ~~~~i~~l~~~~-~~~~-~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d-g~v~i~~~~~  206 (415)
                      .-.....+++.+ ++.+ ++  ..+.|.++++........+.....  ....++.+|.+..|..+.... +.|...+.++
T Consensus        75 ~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~--~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG  152 (316)
T 1ijq_A           75 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGS--KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG  152 (316)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTC--CEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             CCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCC--CcceEEeCCCCCEEEEEccCCCCeEEEEcCCC
Confidence            224567888875 3443 33  467899999865433222332222  345555565444444433333 6777777777


Q ss_pred             cceEEEe-cCccceEEEEeCCCCCEEEEEeC-CCcEEEEEECCCCcEEEEEe-cCCCcccEEEEEeCCCCCEEEEEeCCC
Q 014977          207 NMIKLIN-AHDSHIACFTLTLDGLLLATAST-RGTLIRIFNTVDGTRLQEVR-RGVDRAEIYSIALSPNVQWLAVASDKG  283 (415)
Q Consensus       207 ~~~~~~~-~~~~~i~~l~~sp~g~~l~s~s~-dg~~I~vwd~~~~~~~~~~~-~~~~~~~v~~l~~spdg~~l~s~s~dg  283 (415)
                      .....+. ..-.....|++++++..|+.+.. .+. |..+|+.... ...+. ..........|++. .+.++++-...+
T Consensus       153 ~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~-I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~  229 (316)
T 1ijq_A          153 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS-ISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE  229 (316)
T ss_dssp             CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTSCS-CEEEEECTTTTSSEEEEEEE-TTEEEEEETTTT
T ss_pred             CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCe-EEEEecCCCc-eEEEeecCCccCCcEEEEEE-CCEEEEEECCCC
Confidence            6655543 23456789999998777766654 456 9999986433 33332 21122346778875 355555666678


Q ss_pred             eEEEEEceecccC
Q 014977          284 TVHIFSLRVRVVG  296 (415)
Q Consensus       284 ~i~vwd~~~~~~~  296 (415)
                      .|..++..+++..
T Consensus       230 ~V~~~~~~~g~~~  242 (316)
T 1ijq_A          230 AIFSANRLTGSDV  242 (316)
T ss_dssp             EEEEEETTTCCCC
T ss_pred             eEEEEeCCCCcce
Confidence            8999887766643

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.42  E-value=0.00089  Score=68.27  Aligned_cols=235  Identities=10%  Similarity=0.033  Sum_probs=141.9

Q ss_pred             CceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEec-----cCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEE
Q 014977           45 IELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDL-----KSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIW  119 (415)
Q Consensus        45 ~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vw  119 (415)
                      ..|.++...++|.+.+. +.+.+.+|+..+.........     ......+.++....++.+.++...      +-|.++
T Consensus       211 ~~i~~i~~d~~g~lwig-t~~Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~------~Gl~~~  283 (781)
T 3v9f_A          211 NDVRCIYKDTNGNIWIG-TSKGLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATEL------NGIMIL  283 (781)
T ss_dssp             SSEEEEEECTTCCEEEE-ETTEEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEESS------SCEEEE
T ss_pred             CceeEEEEcCCCCEEEE-eCCcHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCC------CCeEEE
Confidence            56889988888876654 434888998765332111100     012345778888888877776543      568888


Q ss_pred             ECCCCCEEEEEE---------------ccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEec--------cCCC
Q 014977          120 DDHQSRCIGEFA---------------FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIET--------LANL  174 (415)
Q Consensus       120 d~~~~~~~~~~~---------------~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~--------~~~~  174 (415)
                      |..+++......               ....|.++...+++.+.+  .++.|..++..+.... .+..        ....
T Consensus       284 ~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~~~l~~  362 (781)
T 3v9f_A          284 DLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFH-TWSYSPTQMNESSLSN  362 (781)
T ss_dssp             ETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCE-EEC----CCCSSCCSS
T ss_pred             CCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcce-eeccCccccccCCCCC
Confidence            877665432111               135688999998887766  4788999997654332 2211        1112


Q ss_pred             cceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEE----ecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCc
Q 014977          175 RGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLI----NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT  250 (415)
Q Consensus       175 ~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~----~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~  250 (415)
                      ..+.++..++++.+.+.  ..++-+..++........+    ......|.++...++|.+.+ |+.++. |..+|..+++
T Consensus       363 ~~v~~i~~d~~g~lWig--t~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~G-l~~~~~~~~~  438 (781)
T 3v9f_A          363 KVVSSVCDDGQGKLWIG--TDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGN-ISYYNTRLKK  438 (781)
T ss_dssp             SCEEEEEECTTSCEEEE--EBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEE-EEEECSSSCE
T ss_pred             cceEEEEEcCCCCEEEE--eCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCC-EEEEcCCCCc
Confidence            24677777777766543  3344566655544332222    12346788999888887544 666677 9999987765


Q ss_pred             EEEEEec-CCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977          251 RLQEVRR-GVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (415)
Q Consensus       251 ~~~~~~~-~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  294 (415)
                      .. .+.. ......|.++...++|.+. .|+.. -|..||..+++
T Consensus       439 ~~-~~~~~~~~~~~v~~i~~d~~g~lw-igt~~-Gl~~~~~~~~~  480 (781)
T 3v9f_A          439 FQ-IIELEKNELLDVRVFYEDKNKKIW-IGTHA-GVFVIDLASKK  480 (781)
T ss_dssp             EE-ECCSTTTCCCCEEEEEECTTSEEE-EEETT-EEEEEESSSSS
T ss_pred             EE-EeccCCCCCCeEEEEEECCCCCEE-EEECC-ceEEEeCCCCe
Confidence            43 3321 1133579999988887644 45554 48889877654

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.35  E-value=0.0018  Score=60.26  Aligned_cols=228  Identities=7%  Similarity=-0.101  Sum_probs=134.1

Q ss_pred             CEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCeEEEEECCCC----CEEEEEE
Q 014977           57 GCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQS----RCIGEFA  131 (415)
Q Consensus        57 ~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~i~vwd~~~~----~~~~~~~  131 (415)
                      .+|+.+....|+..+++.......  + .....+..+.|++ ++.++.+....     +.|..+++...    .....+.
T Consensus        84 ~~ll~~~~~~I~~i~l~~~~~~~~--~-~~~~~~~~l~~d~~~~~lywsD~~~-----~~I~~~~~~g~~~~~~~~~~~~  155 (400)
T 3p5b_L           84 AYLFFTNRHEVRKMTLDRSEYTSL--I-PNLRNVVALDTEVASNRIYWSDLSQ-----RMICSTQLDRAHGVSSYDTVIS  155 (400)
T ss_dssp             CEEEEEETTEEEEECTTSCSCEEE--E-CSCSCEEEEEEETTTTEEEEEETTT-----TEEEEEEC------CCCEEEEC
T ss_pred             ceeEEeccceeEEEccCCcceeEe--c-cccCcceEEeeeeccCceEEEecCC-----CeEEEEEcccCCCCCcceEEEe
Confidence            466666678888888876443222  2 3445677888886 45555554444     88999987652    2222233


Q ss_pred             -ccCceeEEEEcC-CeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeC-CccCeEEEEEcC
Q 014977          132 -FRSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG-LQRGQVRIEHFG  205 (415)
Q Consensus       132 -~~~~i~~l~~~~-~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~dg~v~i~~~~  205 (415)
                       .......+++.+ .+.+.+   ..+.|.+.++........+.....  ....++.+|.+..|..+. ...+.|...+.+
T Consensus       156 ~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~--~P~~iavdp~~g~ly~td~~~~~~I~~~~~d  233 (400)
T 3p5b_L          156 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGS--KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN  233 (400)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSC--CEEEEEEETTTTEEEEEECSSSCCEEEEETT
T ss_pred             CCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCC--CcceEEEecccCeEEEEeCCCCCEEEEEeCC
Confidence             345677888886 344333   467899999865443333332222  345555555433444433 234677777777


Q ss_pred             CcceEEEec-CccceEEEEeCCCCCEEEEEeC-CCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCC
Q 014977          206 LNMIKLINA-HDSHIACFTLTLDGLLLATAST-RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKG  283 (415)
Q Consensus       206 ~~~~~~~~~-~~~~i~~l~~sp~g~~l~s~s~-dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg  283 (415)
                      +.....+.. .-.....|++++++..|+.+.. .+. |..+|+........+.....-....+|++. .+.++++-...+
T Consensus       234 G~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~-I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~  311 (400)
T 3p5b_L          234 GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS-ISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE  311 (400)
T ss_dssp             SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSC
T ss_pred             CCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCE-EEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCC
Confidence            766555533 3356789999988777777655 455 999998644333233321122345677773 344555666667


Q ss_pred             eEEEEEceecccC
Q 014977          284 TVHIFSLRVRVVG  296 (415)
Q Consensus       284 ~i~vwd~~~~~~~  296 (415)
                      .|..++..+++..
T Consensus       312 ~V~~~~~~~G~~~  324 (400)
T 3p5b_L          312 AIFSANRLTGSDV  324 (400)
T ss_dssp             SEEEEESSSCCCC
T ss_pred             eEEEEEcCCCCce
Confidence            8888887777644

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.34  E-value=0.00055  Score=69.79  Aligned_cols=237  Identities=12%  Similarity=0.050  Sum_probs=144.6

Q ss_pred             CCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEe-------ccCCCeeEEEEeeeCCeEEEEecCCCCCCCCC
Q 014977           43 DEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRD-------LKSGGFRIVEMLFRCNILALVGAGDNSQYPPT  114 (415)
Q Consensus        43 h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~  114 (415)
                      ....|.++...++|.+- +|+ ++.|..|+...........       -......+.++....++.+.++...      +
T Consensus       311 ~~~~v~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~------~  383 (781)
T 3v9f_A          311 SNASARYIFQDSFNNIW-IGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDG------G  383 (781)
T ss_dssp             SSSCEEEEEECSSCCEE-EEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBS------S
T ss_pred             CCCeEEEEEEeCCCCEE-EEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCC------C
Confidence            35679999999988755 455 8889998876533211110       0012345778888887766655433      5


Q ss_pred             eEEEEECCCCCEEEEE---E-ccCceeEEEEcCCeEEEE-e-CCeEEEEEcCCceeeeEEec-cCCCcceEEEecCCCce
Q 014977          115 KVIIWDDHQSRCIGEF---A-FRSDVRSVKLSRDRIVVV-L-EHKIYVYSFVDLKLLHQIET-LANLRGLCCLSHHSSTS  187 (415)
Q Consensus       115 ~i~vwd~~~~~~~~~~---~-~~~~i~~l~~~~~~~~~~-~-d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  187 (415)
                      -|..|+..+++.....   . ....|.++...+++.+.+ . ++.+..+|..+++... +.. ......+.++..++++.
T Consensus       384 Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~-~~~~~~~~~~v~~i~~d~~g~  462 (781)
T 3v9f_A          384 GINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQI-IELEKNELLDVRVFYEDKNKK  462 (781)
T ss_dssp             CEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEE-CCSTTTCCCCEEEEEECTTSE
T ss_pred             cEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEE-eccCCCCCCeEEEEEECCCCC
Confidence            6888886654332111   1 246788999888877766 4 5789999987665432 221 11223567788887777


Q ss_pred             EEEEeCCccCeEEEEEcCCcceEEEec-C-----ccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEec--CC
Q 014977          188 VLACPGLQRGQVRIEHFGLNMIKLINA-H-----DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR--GV  259 (415)
Q Consensus       188 ~l~~~g~~dg~v~i~~~~~~~~~~~~~-~-----~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~--~~  259 (415)
                      +.+.+  ..| +..++........+.. .     ...|.++...++|.+.+ |+.++. |..||..+++. ..+..  ..
T Consensus       463 lwigt--~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~G-l~~~~~~~~~~-~~~~~~~~l  536 (781)
T 3v9f_A          463 IWIGT--HAG-VFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGG-VGIYTPDMQLV-RKFNQYEGF  536 (781)
T ss_dssp             EEEEE--TTE-EEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSC-EEEECTTCCEE-EEECTTTTC
T ss_pred             EEEEE--CCc-eEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCC-EEEEeCCCCeE-EEccCCCCC
Confidence            66543  344 5555554443333332 1     35789999999998554 455455 88899766543 34432  11


Q ss_pred             CcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977          260 DRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (415)
Q Consensus       260 ~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  294 (415)
                      ....|.++...++|.+.+ ++.+|.|..||.++++
T Consensus       537 ~~~~i~~i~~d~~g~lWi-~T~~Glv~~~d~~~~~  570 (781)
T 3v9f_A          537 CSNTINQIYRSSKGQMWL-ATGEGLVCFPSARNFD  570 (781)
T ss_dssp             SCSCEEEEEECTTSCEEE-EETTEEEEESCTTTCC
T ss_pred             CCCeeEEEEECCCCCEEE-EECCCceEEECCCCCc
Confidence            234689999999888554 4557744888766543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.34  E-value=0.00016  Score=70.98  Aligned_cols=192  Identities=8%  Similarity=0.001  Sum_probs=108.3

Q ss_pred             CCCEEEEEe-CCcEEEEEc-cCCceeEEEeccCCCe---------eEEEEeeeC-CeE----EEEecCCCCCCCCCeEEE
Q 014977           55 DYGCFAAGT-SCGFRIYNC-EPFKETFRRDLKSGGF---------RIVEMLFRC-NIL----ALVGAGDNSQYPPTKVII  118 (415)
Q Consensus        55 ~g~~la~g~-d~~v~iw~~-~~~~~~~~~~~~~~~~---------~~~~~~~~~-~~~----~l~s~~~d~~~~~~~i~v  118 (415)
                      ++.+++.+. ++.|.-+|. ++++.+.+..+.....         ....+...+ ++.    +++. ..+     +.|..
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~-t~d-----g~l~A  135 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKT-QLD-----GNVAA  135 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEE-CTT-----SEEEE
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEE-cCC-----CEEEE
Confidence            344444444 688888999 8888877765422110         001122311 222    3333 334     89999


Q ss_pred             EECCCCCEEEEEEccC-----ceeE-EEEcCCeEEEE-e-------CCeEEEEEcCCceeeeEEeccCCCcc--------
Q 014977          119 WDDHQSRCIGEFAFRS-----DVRS-VKLSRDRIVVV-L-------EHKIYVYSFVDLKLLHQIETLANLRG--------  176 (415)
Q Consensus       119 wd~~~~~~~~~~~~~~-----~i~~-l~~~~~~~~~~-~-------d~~i~iwd~~~~~~~~~~~~~~~~~~--------  176 (415)
                      +|..+|+.+.......     .+.+ ..+. ++.+++ .       ++.|+.+|.++++.+..+........        
T Consensus       136 lDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~  214 (599)
T 1w6s_A          136 LNAETGETVWKVENSDIKVGSTLTIAPYVV-KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFN  214 (599)
T ss_dssp             EETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTT
T ss_pred             EECCCCCEEEeecCCCCCccceeecCCEEE-CCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccc
Confidence            9999999998876322     2221 1222 455555 2       68999999999999887764321100        


Q ss_pred             ----------------------------eEEEecCCCceEEEEeCCcc----------------CeEEE-EEcCCcceEE
Q 014977          177 ----------------------------LCCLSHHSSTSVLACPGLQR----------------GQVRI-EHFGLNMIKL  211 (415)
Q Consensus       177 ----------------------------~~~~~~~~~~~~l~~~g~~d----------------g~v~i-~~~~~~~~~~  211 (415)
                                                  -...+.+++..++.+ +..+                +.|.. +..+++.+..
T Consensus       215 ~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~-g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~  293 (599)
T 1w6s_A          215 IKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYF-GTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFG  293 (599)
T ss_dssp             TTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEE-ECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEE
T ss_pred             cccccccccccccccCCCcceecCCCccccceeEeCCCCEEEE-eCCCCccccCcccCCCccccceEEEEeCCCCceeeE
Confidence                                        001222233333333 2222                24444 4445555555


Q ss_pred             EecCcc----------ceEEEEeC-CCC---CEEEEEeCCCcEEEEEECCCCcEEEEEe
Q 014977          212 INAHDS----------HIACFTLT-LDG---LLLATASTRGTLIRIFNTVDGTRLQEVR  256 (415)
Q Consensus       212 ~~~~~~----------~i~~l~~s-p~g---~~l~s~s~dg~~I~vwd~~~~~~~~~~~  256 (415)
                      ++....          ++. +... .+|   ..++.++.+|. ++++|..+|+.+....
T Consensus       294 ~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~-l~~lD~~tG~~lw~~~  350 (599)
T 1w6s_A          294 YQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGI-VYTLDRTDGALVSANK  350 (599)
T ss_dssp             EESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSE-EEEEETTTCCEEEEEE
T ss_pred             eecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcE-EEEEECCCCCEeeccc
Confidence            543211          121 2222 567   46778899999 9999999999987765

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.26  E-value=0.00091  Score=60.16  Aligned_cols=227  Identities=9%  Similarity=-0.068  Sum_probs=131.5

Q ss_pred             EEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCeEEEEECCCCCEE-EEEE-ccC
Q 014977           58 CFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQSRCI-GEFA-FRS  134 (415)
Q Consensus        58 ~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~-~~~~-~~~  134 (415)
                      +|+.+....|+..+++.........+ ..-.....+.|++ ++.++.+....     +.|..+++..+... ..+. .-.
T Consensus         6 ~ll~~~~~~I~~i~l~~~~~~~~~~~-~~~~~~~~ld~d~~~~~lyw~D~~~-----~~I~r~~~~g~~~~~~~~~~~l~   79 (318)
T 3sov_A            6 LLLYANRRDLRLVDATNGKENATIVV-GGLEDAAAVDFVFSHGLIYWSDVSE-----EAIKRTEFNKTESVQNVVVSGLL   79 (318)
T ss_dssp             EEEEECEEEEEEEETTCTTSCCEEEE-EEEEEEEEEEEEGGGTEEEEEETTT-----TEEEEEETTSSSCCCEEEEECCS
T ss_pred             EEEEEccCeEEEEECCCCceEEEEEe-cCCCccEEEEEEeCCCEEEEEECCC-----CcEEEEEccCCCceEEEEcCCCC
Confidence            55565667788888876432222222 2234566788886 34555554444     89999998765321 1222 234


Q ss_pred             ceeEEEEcC-CeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeC-CccCeEEEEEcCCcce
Q 014977          135 DVRSVKLSR-DRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG-LQRGQVRIEHFGLNMI  209 (415)
Q Consensus       135 ~i~~l~~~~-~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~dg~v~i~~~~~~~~  209 (415)
                      ....+++.+ ++.+..   ..+.|.++++........+.....  ....++.++.+..|..+. ...+.|...+.++...
T Consensus        80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~--~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~  157 (318)
T 3sov_A           80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELD--QPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR  157 (318)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS--SEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC
T ss_pred             CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCC--CccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe
Confidence            567788886 444433   467899999764332222222222  344555555434444433 2356777777777655


Q ss_pred             EEEe-cCccceEEEEeCCCCCEEEEEeC-CCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEE
Q 014977          210 KLIN-AHDSHIACFTLTLDGLLLATAST-RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHI  287 (415)
Q Consensus       210 ~~~~-~~~~~i~~l~~sp~g~~l~s~s~-dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v  287 (415)
                      ..+. ..-...+.|++++++..|+.+.. .+. |..+|+..... ..+... .......+++.. +.++.+-...+.|..
T Consensus       158 ~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~-I~~~d~dG~~~-~~~~~~-~~~~P~glav~~-~~lywtd~~~~~V~~  233 (318)
T 3sov_A          158 FIIINSEIYWPNGLTLDYEEQKLYWADAKLNF-IHKSNLDGTNR-QAVVKG-SLPHPFALTLFE-DILYWTDWSTHSILA  233 (318)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTSCSC-EEEECS-CCSCEEEEEEET-TEEEEEETTTTEEEE
T ss_pred             EEEEECCCCCccEEEEeccCCEEEEEECCCCE-EEEEcCCCCce-EEEecC-CCCCceEEEEeC-CEEEEEecCCCeEEE
Confidence            5443 23345689999997776666655 455 99999854333 333221 233567777753 345555566788999


Q ss_pred             EEceecccC
Q 014977          288 FSLRVRVVG  296 (415)
Q Consensus       288 wd~~~~~~~  296 (415)
                      ++..+++..
T Consensus       234 ~~~~~G~~~  242 (318)
T 3sov_A          234 CNKYTGEGL  242 (318)
T ss_dssp             EETTTCCSC
T ss_pred             EECCCCCce
Confidence            998777643

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.25  E-value=0.00031  Score=62.85  Aligned_cols=190  Identities=9%  Similarity=-0.034  Sum_probs=111.5

Q ss_pred             eeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEEe---C--CeEEEEEcCCc
Q 014977           88 FRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVL---E--HKIYVYSFVDL  162 (415)
Q Consensus        88 ~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~---d--~~i~iwd~~~~  162 (415)
                      .....+.+++++.++++....     +.|..||... +....+........+++.+++++++.   .  ..|..+|..++
T Consensus        32 ~~pegia~~~~g~lyv~d~~~-----~~I~~~d~~g-~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g  105 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEV-----GEIVSITPDG-NQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDG  105 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTT-----TEEEEECTTC-CEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTS
T ss_pred             CCcceEEECCCCCEEEEeCCC-----CeEEEECCCC-ceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCC
Confidence            345567888888777776554     8999999654 55555556677899999999887662   2  24777787777


Q ss_pred             eeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcc--eEEEe---------cCccceEEEEeCCCCCEE
Q 014977          163 KLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNM--IKLIN---------AHDSHIACFTLTLDGLLL  231 (415)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~--~~~~~---------~~~~~i~~l~~sp~g~~l  231 (415)
                      +.......... .........+.+..+++ ...++.|+..+.....  +....         ..-...+.|  +++++.|
T Consensus       106 ~~~~~~~~~~~-~~~~g~~~~~~~~~~v~-d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~l  181 (306)
T 2p4o_A          106 TVETLLTLPDA-IFLNGITPLSDTQYLTA-DSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFL  181 (306)
T ss_dssp             CEEEEEECTTC-SCEEEEEESSSSEEEEE-ETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEE
T ss_pred             eEEEEEeCCCc-cccCcccccCCCcEEEE-ECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEE
Confidence            65433322111 11112222333444433 4356777776554321  11111         011233455  7888776


Q ss_pred             EEEeC-CCcEEEEEECCC-CcE--EEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEce
Q 014977          232 ATAST-RGTLIRIFNTVD-GTR--LQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR  291 (415)
Q Consensus       232 ~s~s~-dg~~I~vwd~~~-~~~--~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~  291 (415)
                      +.+.. .+. |..||+.. ++.  ...+..   ......++++++|+++++....+.|.+++..
T Consensus       182 yv~d~~~~~-I~~~~~~~~g~~~~~~~~~~---~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~  241 (306)
T 2p4o_A          182 YVSNTEKML-LLRIPVDSTDKPGEPEIFVE---QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD  241 (306)
T ss_dssp             EEEETTTTE-EEEEEBCTTSCBCCCEEEEE---SCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred             EEEeCCCCE-EEEEEeCCCCCCCccEEEec---cCCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence            66554 556 99999864 321  112221   1235678899999887776677889998854

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.23  E-value=0.0014  Score=61.70  Aligned_cols=240  Identities=8%  Similarity=-0.043  Sum_probs=137.0

Q ss_pred             CceEEEEEeCC--CCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEEC
Q 014977           45 IELISVSWNQD--YGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD  121 (415)
Q Consensus        45 ~~V~~l~~sp~--g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~  121 (415)
                      .....++|.|+  ...|.++. .+.|+.++.++.... . .. ........+++++++.++++..... .....+...+.
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~-~-~~-~~~~~P~giavd~dG~lyVad~~~~-~~~~gv~~~~~  214 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVD-I-KT-TNIGQCADVNFTLNGDMVVVDDQSS-DTNTGIYLFTR  214 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEE-E-EC-CCCSCEEEEEECTTCCEEEEECCSC-TTSEEEEEECG
T ss_pred             CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEE-E-ee-cCCCCccEEEECCCCCEEEEcCCCC-cccceEEEEEC
Confidence            34678999995  45555555 678888888654332 2 12 3444577888898877666543210 00012333332


Q ss_pred             CCCCE-EEEEEccCceeEEEEcC-CeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCcc
Q 014977          122 HQSRC-IGEFAFRSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR  196 (415)
Q Consensus       122 ~~~~~-~~~~~~~~~i~~l~~~~-~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  196 (415)
                      ..+.. ...+........+++++ ++.+.+   .++.|+.+|..++.....+...........+++++++..|.++-...
T Consensus       215 ~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~  294 (433)
T 4hw6_A          215 ASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGK  294 (433)
T ss_dssp             GGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTT
T ss_pred             CCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCC
Confidence            22211 11222334567788998 777666   46789999987776533332211111233466666666555545566


Q ss_pred             CeEEEEEcCC--cc---eEEEecC---------------ccceEEEEe---------CCCCCEEEEEeCCCcEEEEEECC
Q 014977          197 GQVRIEHFGL--NM---IKLINAH---------------DSHIACFTL---------TLDGLLLATASTRGTLIRIFNTV  247 (415)
Q Consensus       197 g~v~i~~~~~--~~---~~~~~~~---------------~~~i~~l~~---------sp~g~~l~s~s~dg~~I~vwd~~  247 (415)
                      +.|+..+.+.  ..   ...+.+.               -.....+++         .++|.++++-...+. |+.++. 
T Consensus       295 ~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~-I~~~~~-  372 (433)
T 4hw6_A          295 HCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHT-VRVLTP-  372 (433)
T ss_dssp             TEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTE-EEEECT-
T ss_pred             CEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCE-EEEECC-
Confidence            7787755442  11   1222221               123567898         777876666666677 999984 


Q ss_pred             CCcEEEEEecCCC----------------cccEEEEEeC-CCCCEEEEEeCCCeEEEEEce
Q 014977          248 DGTRLQEVRRGVD----------------RAEIYSIALS-PNVQWLAVASDKGTVHIFSLR  291 (415)
Q Consensus       248 ~~~~~~~~~~~~~----------------~~~v~~l~~s-pdg~~l~s~s~dg~i~vwd~~  291 (415)
                      +|... ++.+...                -.....|+++ ++|.++++-...+.|+.++++
T Consensus       373 ~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          373 EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            66443 4432101                1236789999 677666666667788888764

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.23  E-value=0.00075  Score=63.52  Aligned_cols=238  Identities=8%  Similarity=0.032  Sum_probs=132.8

Q ss_pred             ceEEEEEeC-CCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeE-EEEecCCCCCCCCCeEEEEECC
Q 014977           46 ELISVSWNQ-DYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNIL-ALVGAGDNSQYPPTKVIIWDDH  122 (415)
Q Consensus        46 ~V~~l~~sp-~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~~~~~~i~vwd~~  122 (415)
                      ....++++| ++..|.++. .+.|+.++.+.......  . ........+++++++. ++++...... ....+.+.+ .
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~--~-~~~~~P~~ia~d~~G~~lyvad~~~~~-~~~~v~~~~-~  212 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTV--Y-SGLSKVRTICWTHEADSMIITNDQNNN-DRPNNYILT-R  212 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEE--E-CCCSCEEEEEECTTSSEEEEEECCSCT-TSEEEEEEE-G
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEE--e-cCCCCcceEEEeCCCCEEEEEeCCCCc-ccceEEEEe-C
Confidence            467889998 455666666 67788888876432221  2 3445577888888876 4554332100 001344444 3


Q ss_pred             CCCEE--EEEEccCceeEEEEcC-CeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCcc
Q 014977          123 QSRCI--GEFAFRSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR  196 (415)
Q Consensus       123 ~~~~~--~~~~~~~~i~~l~~~~-~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  196 (415)
                      .+...  ..+........++++| ++.+.+   .++.|+.++..++.......... ......+++++++.+|.++....
T Consensus       213 ~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~-~~~P~gia~~pdG~~lyv~d~~~  291 (430)
T 3tc9_A          213 ESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQD-SGWEFHIQFHPSGNYAYIVVVNQ  291 (430)
T ss_dssp             GGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSS-SSCCEEEEECTTSSEEEEEETTT
T ss_pred             CCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCC-CCcceeEEEcCCCCEEEEEECCC
Confidence            33222  3333344567888999 677666   46889999987665432222211 12345566677777555555567


Q ss_pred             CeEEEEEcCCc--c---eEEEecC---------------ccceE-EEEeC--------CCCCEEEEEeCCCcEEEEEECC
Q 014977          197 GQVRIEHFGLN--M---IKLINAH---------------DSHIA-CFTLT--------LDGLLLATASTRGTLIRIFNTV  247 (415)
Q Consensus       197 g~v~i~~~~~~--~---~~~~~~~---------------~~~i~-~l~~s--------p~g~~l~s~s~dg~~I~vwd~~  247 (415)
                      +.|..++.++.  .   +..+.+.               -.... .++..        ++|.++++-...+. |+.++ .
T Consensus       292 ~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~-I~~i~-~  369 (430)
T 3tc9_A          292 HYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHC-IRILT-P  369 (430)
T ss_dssp             TEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTE-EEEEC-T
T ss_pred             CEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcE-EEEEC-C
Confidence            78887554432  1   2222221               01122 45543        44655555555666 99998 4


Q ss_pred             CCcEEEEEecC---CC---c---------ccEEEEEeCCC-CCEEEEEeCCCeEEEEEce
Q 014977          248 DGTRLQEVRRG---VD---R---------AEIYSIALSPN-VQWLAVASDKGTVHIFSLR  291 (415)
Q Consensus       248 ~~~~~~~~~~~---~~---~---------~~v~~l~~spd-g~~l~s~s~dg~i~vwd~~  291 (415)
                      +|+.....-.+   ..   .         .....|+++|+ +.++++-.....|+.++++
T Consensus       370 ~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          370 QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence            66544333210   00   1         14789999995 6565565566788888764

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.19  E-value=0.0015  Score=64.04  Aligned_cols=108  Identities=6%  Similarity=0.030  Sum_probs=62.7

Q ss_pred             CCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeE-------EEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEE
Q 014977           55 DYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRI-------VEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCI  127 (415)
Q Consensus        55 ~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~  127 (415)
                      ++..++.+.++.|.-+|.++++.+.+..........       ..+... ++.+++.. .+     +.|..+|.++|+.+
T Consensus        68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~-~~~v~~~t-~d-----g~l~AlD~~TG~~~  140 (582)
T 1flg_A           68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY-GDKVFFGT-LD-----ASVVALNKNTGKVV  140 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE-TTEEEEEE-TT-----TEEEEEESSSCCEE
T ss_pred             CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEE-CCEEEEEe-CC-----CEEEEEECCCCCEE
Confidence            444444444455888899888887776653221100       111222 33444433 23     89999999999999


Q ss_pred             EEEEccC-----cee-EEEEcCC---e--EEEE-e-------CCeEEEEEcCCceeeeEEe
Q 014977          128 GEFAFRS-----DVR-SVKLSRD---R--IVVV-L-------EHKIYVYSFVDLKLLHQIE  169 (415)
Q Consensus       128 ~~~~~~~-----~i~-~l~~~~~---~--~~~~-~-------d~~i~iwd~~~~~~~~~~~  169 (415)
                      .......     .+. ...+..+   +  .+++ .       ++.|+.+|..+++.+....
T Consensus       141 W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~  201 (582)
T 1flg_A          141 WKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRP  201 (582)
T ss_dssp             EEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEE
T ss_pred             eeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecC
Confidence            8887321     121 1112222   2  3444 2       6899999999999887654

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.19  E-value=0.003  Score=58.76  Aligned_cols=205  Identities=7%  Similarity=-0.072  Sum_probs=118.6

Q ss_pred             CCceEEEEEeCCCCEEEEEe--CCcEEEEEccCCc--eeEEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCeEEE
Q 014977           44 EIELISVSWNQDYGCFAAGT--SCGFRIYNCEPFK--ETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVII  118 (415)
Q Consensus        44 ~~~V~~l~~sp~g~~la~g~--d~~v~iw~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~i~v  118 (415)
                      ...+..++|++....|....  .+.|+.++++...  ......+.........++++. .+.++++....     +.|.+
T Consensus       111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~-----~~I~~  185 (400)
T 3p5b_L          111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVL-----GTVSV  185 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTT-----TEEEE
T ss_pred             cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCC-----CeEEE
Confidence            45678999998766666655  7778888876421  011111212333445566664 44444444443     89999


Q ss_pred             EECCCCCEEEEEE-ccCceeEEEEcCC-eEEEEe----CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEe
Q 014977          119 WDDHQSRCIGEFA-FRSDVRSVKLSRD-RIVVVL----EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP  192 (415)
Q Consensus       119 wd~~~~~~~~~~~-~~~~i~~l~~~~~-~~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  192 (415)
                      .++........+. ......+|++.|. +.+...    .+.|...++........+.....  ....++.++++..|..+
T Consensus       186 ~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~--~P~glavd~~~~~lY~a  263 (400)
T 3p5b_L          186 ADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ--WPNGITLDLLSGRLYWV  263 (400)
T ss_dssp             ECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCS--CEEEEEEETTTTEEEEE
T ss_pred             EeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCC--ceEEEEEEeCCCEEEEE
Confidence            9977655444444 3456789999984 444442    36788888754333222222212  44555555444455555


Q ss_pred             CCccCeEEEEEcCCcceEEEecC---ccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEec
Q 014977          193 GLQRGQVRIEHFGLNMIKLINAH---DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR  257 (415)
Q Consensus       193 g~~dg~v~i~~~~~~~~~~~~~~---~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~  257 (415)
                      -...+.|...+.++.....+...   ......+++. .+.++++-...+. |..+|..+|+.+..+..
T Consensus       264 D~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~-V~~~~~~~G~~~~~i~~  329 (400)
T 3p5b_L          264 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEA-IFSANRLTGSDVNLLAE  329 (400)
T ss_dssp             ETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCS-EEEEESSSCCCCEEEEC
T ss_pred             ECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCe-EEEEEcCCCCceEEEec
Confidence            55677888877777665555332   2344567663 3345555555667 88888778877666654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.17  E-value=0.0027  Score=54.76  Aligned_cols=195  Identities=7%  Similarity=0.026  Sum_probs=112.8

Q ss_pred             CCCCCceEEEEEeCCCCEEEEEe--CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEE
Q 014977           41 DVDEIELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII  118 (415)
Q Consensus        41 ~~h~~~V~~l~~sp~g~~la~g~--d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~v  118 (415)
                      .+-...+..++|+|++..|++..  ++.|...|.. ++......+ .+....-.+++.+++.++++...+     +.+.+
T Consensus        23 ~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l-~g~~D~EGIa~~~~g~~~vs~E~~-----~~l~~   95 (255)
T 3qqz_A           23 AGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPL-DFVKDLETIEYIGDNQFVISDERD-----YAIYV   95 (255)
T ss_dssp             TTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEEC-SSCSSEEEEEECSTTEEEEEETTT-----TEEEE
T ss_pred             CCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEec-CCCCChHHeEEeCCCEEEEEECCC-----CcEEE
Confidence            34445799999999877666544  6666666665 343333334 333445567777888877776555     88999


Q ss_pred             EECCCCCE---EEEEE-------ccCceeEEEEcCCe-EE-EE-eCC--eEEEEEc-CCceeeeEEec-------cCCCc
Q 014977          119 WDDHQSRC---IGEFA-------FRSDVRSVKLSRDR-IV-VV-LEH--KIYVYSF-VDLKLLHQIET-------LANLR  175 (415)
Q Consensus       119 wd~~~~~~---~~~~~-------~~~~i~~l~~~~~~-~~-~~-~d~--~i~iwd~-~~~~~~~~~~~-------~~~~~  175 (415)
                      +++.....   +....       .......|+|+|++ ++ ++ ...  .|+.|+- .....+..+..       .....
T Consensus        96 ~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~  175 (255)
T 3qqz_A           96 ISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDV  175 (255)
T ss_dssp             EEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCC
T ss_pred             EEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCc
Confidence            98765542   23332       12345899999876 33 33 222  4555551 11112222211       11222


Q ss_pred             ceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEecCc---------cceEEEEeCCCCCEEEEEeCCCcEEEEEEC
Q 014977          176 GLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHD---------SHIACFTLTLDGLLLATASTRGTLIRIFNT  246 (415)
Q Consensus       176 ~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~---------~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~  246 (415)
                      ..+++.+.. +.+++. ...+..+.+.+.+++.+..+.-..         .....|+|.++|++.++ ++.+. +++|.-
T Consensus       176 S~l~~dp~t-g~lliL-S~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~-~y~f~~  251 (255)
T 3qqz_A          176 SGAEFNQQK-NTLLVL-SHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNR-FYRFTP  251 (255)
T ss_dssp             CEEEEETTT-TEEEEE-ETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTE-EEEEEC
T ss_pred             eeEEEcCCC-CeEEEE-ECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCce-EEEEEe
Confidence            344444443 234433 456777777888887666554332         25678999999985444 66666 777754

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.15  E-value=0.0012  Score=59.42  Aligned_cols=174  Identities=12%  Similarity=0.152  Sum_probs=110.9

Q ss_pred             CeEEEEECCCCCEEEEEEccCceeEEEEcCCeE-------E-EE---e--CCeEEEEEcC-CceeeeEEec-------cC
Q 014977          114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRI-------V-VV---L--EHKIYVYSFV-DLKLLHQIET-------LA  172 (415)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~-------~-~~---~--d~~i~iwd~~-~~~~~~~~~~-------~~  172 (415)
                      +-+.+||+ +|+.++.+.. +.++.+.+-|+-.       + ++   .  +++|.+|++. ..+.+..+..       ..
T Consensus        50 ~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~  127 (355)
T 3amr_A           50 SGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAI  127 (355)
T ss_dssp             TEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCC
T ss_pred             CCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCCC
Confidence            89999998 9999888764 6677777776431       2 22   4  5789999773 2223444411       11


Q ss_pred             CCcceEEEecCC-CceEEEEeCCccCeEEEEEcC--------CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEE
Q 014977          173 NLRGLCCLSHHS-STSVLACPGLQRGQVRIEHFG--------LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRI  243 (415)
Q Consensus       173 ~~~~~~~~~~~~-~~~~l~~~g~~dg~v~i~~~~--------~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~v  243 (415)
                      ....-+|+.-++ .+.+.++....+|.+..|...        .+.++.+.. .+.+..+...+....|+.+-++.. |..
T Consensus       128 ~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~G-Iw~  205 (355)
T 3amr_A          128 NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEA-IWK  205 (355)
T ss_dssp             SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTE-EEE
T ss_pred             CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEEecccce-EEE
Confidence            222335553233 343334445678888775542        244555554 356788889998889999999988 888


Q ss_pred             EECC-----CCcEEEEEecCCCcccEEEEEe--CCCCC-EEEEEe-CCCeEEEEEce
Q 014977          244 FNTV-----DGTRLQEVRRGVDRAEIYSIAL--SPNVQ-WLAVAS-DKGTVHIFSLR  291 (415)
Q Consensus       244 wd~~-----~~~~~~~~~~~~~~~~v~~l~~--spdg~-~l~s~s-~dg~i~vwd~~  291 (415)
                      ++.+     +++.+..+........+..|++  .++++ +|++++ .++++.+||.+
T Consensus       206 ~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          206 FSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             EeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            8855     3445555433323346888887  56666 566555 57799999986

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.12  E-value=0.00018  Score=72.93  Aligned_cols=245  Identities=9%  Similarity=-0.007  Sum_probs=126.1

Q ss_pred             CCCCC-ceEEEEEe-CCCCEEEEEe--CC----cEEEEEccCC-ceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCC
Q 014977           41 DVDEI-ELISVSWN-QDYGCFAAGT--SC----GFRIYNCEPF-KETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQY  111 (415)
Q Consensus        41 ~~h~~-~V~~l~~s-p~g~~la~g~--d~----~v~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~  111 (415)
                      .+|.- .+...+|| |||++||.+.  +|    .|+++|++++ +.+ ...+   ......+.|++++..|+....+...
T Consensus       169 ~~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l-~~~~---~~~~~~~~WspDg~~l~y~~~d~~~  244 (751)
T 2xe4_A          169 EGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI-ADKV---SGTNGEIVWGPDHTSLFYVTKDETL  244 (751)
T ss_dssp             TTCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC-CCCE---EEECSCCEECSSTTEEEEEEECTTC
T ss_pred             cCCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC-Cccc---cCceeeEEEecCCCEEEEEEECCCC
Confidence            34443 78899999 9999999766  33    3899999886 421 1111   1112357788887444333322111


Q ss_pred             CCCeEEEEECCCCCE--EEEEE--ccCceeEEEEcCCeEEEE------eCCeEEEEEcCCce-ee--eEEe-ccCCCcce
Q 014977          112 PPTKVIIWDDHQSRC--IGEFA--FRSDVRSVKLSRDRIVVV------LEHKIYVYSFVDLK-LL--HQIE-TLANLRGL  177 (415)
Q Consensus       112 ~~~~i~vwd~~~~~~--~~~~~--~~~~i~~l~~~~~~~~~~------~d~~i~iwd~~~~~-~~--~~~~-~~~~~~~~  177 (415)
                      ....|.++++.+++.  ...+.  .......+.|+||++.++      ....|+++|+.++. ..  ..+. ....  ..
T Consensus       245 ~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~--~~  322 (751)
T 2xe4_A          245 RENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKG--VR  322 (751)
T ss_dssp             CEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTT--CC
T ss_pred             CCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCC--ce
Confidence            113688888877642  23333  234566789999998877      24578899987652 12  2232 2222  11


Q ss_pred             EEEecCCCceEEEEeCCcc--C--eEEEEEcCC-cceEE-EecCcc--ceEEEEeCCCCCEEEEEeCCCc-EEEEEEC--
Q 014977          178 CCLSHHSSTSVLACPGLQR--G--QVRIEHFGL-NMIKL-INAHDS--HIACFTLTLDGLLLATASTRGT-LIRIFNT--  246 (415)
Q Consensus       178 ~~~~~~~~~~~l~~~g~~d--g--~v~i~~~~~-~~~~~-~~~~~~--~i~~l~~sp~g~~l~s~s~dg~-~I~vwd~--  246 (415)
                      ....+...+.+++. ...+  +  .|...+... ..... +..+..  .+..+.+. .+.++++...++. .|.++|+  
T Consensus       323 ~s~~~~~g~~l~~~-t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl~~  400 (751)
T 2xe4_A          323 YDVQMHGTSHLVIL-TNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMADS  400 (751)
T ss_dssp             EEEEEETTTEEEEE-ECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEECCT
T ss_pred             EEEeeeeCCEEEEE-eCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEeccc
Confidence            22221222333333 3333  3  444455442 23233 334433  34555554 3345566666664 2556675  


Q ss_pred             -----CCCcEEEEEecCCCcccEEEEEe----CCCCC-EEEEEeCC---CeEEEEEceecc
Q 014977          247 -----VDGTRLQEVRRGVDRAEIYSIAL----SPNVQ-WLAVASDK---GTVHIFSLRVRV  294 (415)
Q Consensus       247 -----~~~~~~~~~~~~~~~~~v~~l~~----spdg~-~l~s~s~d---g~i~vwd~~~~~  294 (415)
                           .+++....+... ....+..+.+    ++++. ++++.+..   ..++.+|+.+++
T Consensus       401 ~~~~~~~g~~~~~l~l~-~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~  460 (751)
T 2xe4_A          401 QDGVFKAGTGLREVVME-EPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS  460 (751)
T ss_dssp             TTSCCCTTTCCEECCCC-CSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred             ccccccCCccceEECCC-CceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence                 344413344321 1122445543    44655 44443333   357777776654

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.11  E-value=0.0053  Score=62.14  Aligned_cols=228  Identities=7%  Similarity=-0.103  Sum_probs=128.8

Q ss_pred             EEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCeEEEEECCCC----CEEEEEE-
Q 014977           58 CFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQS----RCIGEFA-  131 (415)
Q Consensus        58 ~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~i~vwd~~~~----~~~~~~~-  131 (415)
                      +|+......|+..+++.......  + .....+..+.++. ++.++++....     +.|+.+++...    .....+. 
T Consensus       397 ~Ll~an~~~Ir~i~l~~~~~~~l--~-~~~~~~~gl~~d~~~~~lY~sD~~~-----~~I~~~~l~g~~~~~~~~~vi~~  468 (791)
T 3m0c_C          397 YLFFTNRHEVRKMTLDRSEYTSL--I-PNLRNVVALDTEVASNRIYWSDLSQ-----RMICSTQLDRAHGVSSYDTVISR  468 (791)
T ss_dssp             EEEEECBSSEEEECTTSCCCEEE--E-CSCSSEEEEEEETTTTEEEEEETTT-----TEEEEEEC--------CEEEECS
T ss_pred             ccccccccceeEeeccCCcceee--e-cCCCceEEEeecccCCeeEEeeccc-----eeEEEEeccCCCCCcceeEEEec
Confidence            55555566677777765432221  1 3344566777876 45555554444     88988887653    2222233 


Q ss_pred             ccCceeEEEEcCCe-E-EEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCC-ccCeEEEEEcCC
Q 014977          132 FRSDVRSVKLSRDR-I-VVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL-QRGQVRIEHFGL  206 (415)
Q Consensus       132 ~~~~i~~l~~~~~~-~-~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~dg~v~i~~~~~  206 (415)
                      .......|++.+.+ + +++  ..+.|.+.++........+.....  ....++.++.+..|+++-. ..+.|...+.++
T Consensus       469 ~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~--~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG  546 (791)
T 3m0c_C          469 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGS--KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG  546 (791)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTC--CEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             CCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCC--CcceEEEecCCCCEEEecCCCCCeEEEEecCC
Confidence            33556788888654 3 333  467899999865443333332222  3455555554334444332 236787777777


Q ss_pred             cceEEEec-CccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeE
Q 014977          207 NMIKLINA-HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTV  285 (415)
Q Consensus       207 ~~~~~~~~-~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i  285 (415)
                      .....+.. .-.....|++++.+..|+.+......|..+++........+.....-....+|++..+ +++++-...+.|
T Consensus       547 ~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~-~lYwtD~~~~~I  625 (791)
T 3m0c_C          547 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAI  625 (791)
T ss_dssp             CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT-EEEEEETTTTEE
T ss_pred             CceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC-EEEEEECCCCEE
Confidence            76665543 3357889999987777766654433399999854444333332112224557776432 344444556778


Q ss_pred             EEEEceecccC
Q 014977          286 HIFSLRVRVVG  296 (415)
Q Consensus       286 ~vwd~~~~~~~  296 (415)
                      ...+..+++..
T Consensus       626 ~~~dk~tG~~~  636 (791)
T 3m0c_C          626 FSANRLTGSDV  636 (791)
T ss_dssp             EEEETTTCCCC
T ss_pred             EEEeCCCCcce
Confidence            88877666544

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.09  E-value=0.002  Score=57.86  Aligned_cols=174  Identities=9%  Similarity=-0.087  Sum_probs=107.9

Q ss_pred             CeEEEEECCCCCEEEEEEccCceeEEEEcCCe-EEEE---eCCeEEEEEcCC----ceeeeEEeccCCCcceEEEecCCC
Q 014977          114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDR-IVVV---LEHKIYVYSFVD----LKLLHQIETLANLRGLCCLSHHSS  185 (415)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~-~~~~---~d~~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~~~~  185 (415)
                      ..|+..|+...+....+.....+.+++|++.+ .+..   .++.|+.+++..    ......+.........+++.+...
T Consensus        10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~   89 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS   89 (316)
T ss_dssp             SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred             CeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCC
Confidence            67899998887766656556678899999754 3333   468999999865    222222222212223344444333


Q ss_pred             ceEEEEeCCccCeEEEEEcCCcceEEEe-cCccceEEEEeCCCCCEEEEEeCC--CcEEEEEECCCCcEEEEEecCCCcc
Q 014977          186 TSVLACPGLQRGQVRIEHFGLNMIKLIN-AHDSHIACFTLTLDGLLLATASTR--GTLIRIFNTVDGTRLQEVRRGVDRA  262 (415)
Q Consensus       186 ~~~l~~~g~~dg~v~i~~~~~~~~~~~~-~~~~~i~~l~~sp~g~~l~s~s~d--g~~I~vwd~~~~~~~~~~~~~~~~~  262 (415)
                        .|..+....+.|.+.+..+.....+. ........++++|.+..|+.+...  +. |..+++. |.....+... .-.
T Consensus        90 --~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~-I~~~~~d-G~~~~~~~~~-~~~  164 (316)
T 1ijq_A           90 --NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAK-IKKGGLN-GVDIYSLVTE-NIQ  164 (316)
T ss_dssp             --EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCE-EEEEETT-SCCEEEEECS-SCS
T ss_pred             --eEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCe-EEEEcCC-CCCeEEEEEC-CCC
Confidence              33333446778888777776555443 344567899999976665555543  56 8888874 5444444321 234


Q ss_pred             cEEEEEeCCCCCEEEEEe-CCCeEEEEEcee
Q 014977          263 EIYSIALSPNVQWLAVAS-DKGTVHIFSLRV  292 (415)
Q Consensus       263 ~v~~l~~spdg~~l~s~s-~dg~i~vwd~~~  292 (415)
                      ....|++++++..|+.+. ..+.|..+|++.
T Consensus       165 ~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg  195 (316)
T 1ijq_A          165 WPNGITLDLLSGRLYWVDSKLHSISSIDVNG  195 (316)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence            678999999877766554 456899999874

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.09  E-value=0.0019  Score=59.84  Aligned_cols=202  Identities=9%  Similarity=-0.087  Sum_probs=114.8

Q ss_pred             CceEEEEEeCCCCEEEEEe--CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCeEEEEEC
Q 014977           45 IELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDD  121 (415)
Q Consensus        45 ~~V~~l~~sp~g~~la~g~--d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~i~vwd~  121 (415)
                      ..+..++|.+.+..|....  .+.|..++.+.......  +.........+++++ .+.++++....     +.|.+.++
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~--~~~~~~~p~glavd~~~g~lY~~d~~~-----~~I~~~~~  188 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV--VSTGLESPGGLAVDWVHDKLYWTDSGT-----SRIEVANL  188 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEE--ECSSCSCCCCEEEETTTTEEEEEETTT-----TEEEECBT
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEE--EeCCCCCccEEEEEeCCCeEEEEcCCC-----CeEEEEeC
Confidence            4578899998766666555  77888888875432221  112222233455554 34444444433     78888887


Q ss_pred             CCCCEEEEEE-ccCceeEEEEcCCeE-EEE---eC-CeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCc
Q 014977          122 HQSRCIGEFA-FRSDVRSVKLSRDRI-VVV---LE-HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ  195 (415)
Q Consensus       122 ~~~~~~~~~~-~~~~i~~l~~~~~~~-~~~---~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  195 (415)
                      ........+. .-....++++.|.+. +..   .. +.|+.+++..............  ....+++++++..|.++-..
T Consensus       189 dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~--~PnGlavd~~~~~lY~aD~~  266 (386)
T 3v65_B          189 DGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLF--WPNGLTIDYAGRRMYWVDAK  266 (386)
T ss_dssp             TSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCS--CEEEEEEEGGGTEEEEEETT
T ss_pred             CCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCC--CeeeEEEeCCCCEEEEEECC
Confidence            6544333333 235678999997543 333   23 7788888754332222222222  34455555444445455556


Q ss_pred             cCeEEEEEcCCcceEEEe-cCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEec
Q 014977          196 RGQVRIEHFGLNMIKLIN-AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR  257 (415)
Q Consensus       196 dg~v~i~~~~~~~~~~~~-~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~  257 (415)
                      .+.|...+.++.....+. ........|++ ..+.++++-...+. |..+|..+|+.+..+..
T Consensus       267 ~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~-V~~~~~~~G~~~~~i~~  327 (386)
T 3v65_B          267 HHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKS-INSANKFTGKNQEIIRN  327 (386)
T ss_dssp             TTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTE-EEEEETTTCCSCEEEEC
T ss_pred             CCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCe-EEEEECCCCcceEEEcc
Confidence            778888777765544443 23445567777 34445555555666 88888667776666654

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.09  E-value=0.00026  Score=70.63  Aligned_cols=238  Identities=11%  Similarity=0.007  Sum_probs=123.6

Q ss_pred             EEEEeC-CCCEEEEEe-CC-----------cEEEEEccCCceeEEEecc-CCCeeEEEEeeeCCeEEEEecCCCCCCCCC
Q 014977           49 SVSWNQ-DYGCFAAGT-SC-----------GFRIYNCEPFKETFRRDLK-SGGFRIVEMLFRCNILALVGAGDNSQYPPT  114 (415)
Q Consensus        49 ~l~~sp-~g~~la~g~-d~-----------~v~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~  114 (415)
                      ++++.+ ++++++.|+ +.           .+.+||..+........+. ..........+..++.+++.|+.+    +.
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~----~~  265 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGND----AK  265 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSS----TT
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCC----CC
Confidence            566777 888888886 32           4778888765432211111 122222234556677777777643    26


Q ss_pred             eEEEEECCCCCEEEEEE--ccCceeEEEEcCCeEEEEe----C-----CeEEEEEcCCceeeeEE----eccCCCcceEE
Q 014977          115 KVIIWDDHQSRCIGEFA--FRSDVRSVKLSRDRIVVVL----E-----HKIYVYSFVDLKLLHQI----ETLANLRGLCC  179 (415)
Q Consensus       115 ~i~vwd~~~~~~~~~~~--~~~~i~~l~~~~~~~~~~~----d-----~~i~iwd~~~~~~~~~~----~~~~~~~~~~~  179 (415)
                      .+.+||..+++....-.  ....-.++.+.+++++++.    +     ..+.+||..+.+-...-    .........  
T Consensus       266 ~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~--  343 (656)
T 1k3i_A          266 KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQ--  343 (656)
T ss_dssp             CEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTT--
T ss_pred             ceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccccc--
Confidence            89999988775443222  1222245566667776662    1     46899998776533210    000000000  


Q ss_pred             EecCCCceEEEEeCCccCe---------EEEEEcCCcc-eEEEecCc---------cceEEEEeC-CCCCEEEEEeCCC-
Q 014977          180 LSHHSSTSVLACPGLQRGQ---------VRIEHFGLNM-IKLINAHD---------SHIACFTLT-LDGLLLATASTRG-  238 (415)
Q Consensus       180 ~~~~~~~~~l~~~g~~dg~---------v~i~~~~~~~-~~~~~~~~---------~~i~~l~~s-p~g~~l~s~s~dg-  238 (415)
                      .....++..+++ |..+|.         +..|+..... ......+.         ..-.++.|. .++++++.|+.++ 
T Consensus       344 ~~~~~~~~iyv~-Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~  422 (656)
T 1k3i_A          344 GLYRSDNHAWLF-GWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDY  422 (656)
T ss_dssp             GGGTTTCSCCEE-ECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSS
T ss_pred             ceeecCCceEEE-ECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCC
Confidence            011122233333 333443         3444444322 11111111         122344443 3778888887542 


Q ss_pred             ----------cEEEEEECCCCcEEEEEecCCCccc-EEEEEeCCCCCEEEEEeCC-----------CeEEEEEceecc
Q 014977          239 ----------TLIRIFNTVDGTRLQEVRRGVDRAE-IYSIALSPNVQWLAVASDK-----------GTVHIFSLRVRV  294 (415)
Q Consensus       239 ----------~~I~vwd~~~~~~~~~~~~~~~~~~-v~~l~~spdg~~l~s~s~d-----------g~i~vwd~~~~~  294 (415)
                                . |.+||..+.+-............ -.+++..|++++++.|+.+           ..+.+||..+++
T Consensus       423 ~~~~~~~~~~~-v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~  499 (656)
T 1k3i_A          423 QDSDATTNAHI-ITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT  499 (656)
T ss_dssp             SSSBCCCCEEE-EECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE
T ss_pred             CCCCcCCcceE-EEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCc
Confidence                      5 88888877665433201101111 2344566899999998854           457888877654

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.08  E-value=0.0036  Score=57.07  Aligned_cols=201  Identities=9%  Similarity=-0.067  Sum_probs=113.5

Q ss_pred             CceEEEEEeCCCCEEEEEe--CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCeEEEEEC
Q 014977           45 IELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDD  121 (415)
Q Consensus        45 ~~V~~l~~sp~g~~la~g~--d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~i~vwd~  121 (415)
                      ..+..++|++....|....  .+.|..++++.........  ........+++++ ++.++++....     +.|.+.++
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~--~~~~~p~glavd~~~g~ly~~d~~~-----~~I~~~~~  145 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS--TGLESPGGLAVDWVHDKLYWTDSGT-----SRIEVANL  145 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--SSCSCCCEEEEETTTTEEEEEETTT-----TEEEEEET
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe--CCCCCccEEEEecCCCeEEEEcCCC-----CeEEEEcC
Confidence            3468899998766666555  7788888887543222111  2222234455554 44444444443     78999997


Q ss_pred             CCCCEEEEEE-ccCceeEEEEcCC-eEEEE---eC-CeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCc
Q 014977          122 HQSRCIGEFA-FRSDVRSVKLSRD-RIVVV---LE-HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ  195 (415)
Q Consensus       122 ~~~~~~~~~~-~~~~i~~l~~~~~-~~~~~---~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  195 (415)
                      ........+. .-....+++++|. +.+..   .. +.|+.+++.... ...+.. ........+++++++..|..+-..
T Consensus       146 dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~-~~~~~PnGla~d~~~~~lY~aD~~  223 (349)
T 3v64_C          146 DGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIAD-THLFWPNGLTIDYAGRRMYWVDAK  223 (349)
T ss_dssp             TSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEESCC-SSCSCEEEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC-cEEEEE-CCCCCcceEEEeCCCCEEEEEECC
Confidence            6544333332 3356789999984 44444   23 778888875432 222211 111234556666444445454556


Q ss_pred             cCeEEEEEcCCcceEEEe-cCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEe
Q 014977          196 RGQVRIEHFGLNMIKLIN-AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVR  256 (415)
Q Consensus       196 dg~v~i~~~~~~~~~~~~-~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~  256 (415)
                      .+.|...+.++.....+. ........|++ .++.++++-...+. |..+|..+|+.+..+.
T Consensus       224 ~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~-V~~~~~~~G~~~~~i~  283 (349)
T 3v64_C          224 HHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKS-INSANKFTGKNQEIIR  283 (349)
T ss_dssp             TTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTE-EEEEETTTCCSCEEEE
T ss_pred             CCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCe-EEEEEccCCCccEEec
Confidence            778888777775544433 33345567777 34444444445556 7777766666555554

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.07  E-value=0.0059  Score=55.06  Aligned_cols=225  Identities=12%  Similarity=0.095  Sum_probs=119.2

Q ss_pred             CCceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEe-c--cCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEE
Q 014977           44 EIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRD-L--KSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD  120 (415)
Q Consensus        44 ~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd  120 (415)
                      ...+.+|.|.+++..+++|..+.|  |............ +  ......+..+.+.++..+ +.+. .     +.|..- 
T Consensus        35 ~~~~~~v~~~~~~~~~~~G~~g~i--~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~-~~g~-~-----g~i~~S-  104 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWLVGVNATL--METRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGW-IVGE-P-----PIMLHT-  104 (327)
T ss_dssp             SSCEEEEEESSSSCEEEEETTTEE--EEESSTTSSCEECCCCCSCCCCEEEEEEEETTEEE-EEEE-T-----TEEEEE-
T ss_pred             CCcEEEEEECCCCcEEEEcCCCeE--EEeCCCCCCCeECCCCCCCCCccEEEEEecCCeEE-EEEC-C-----CeEEEE-
Confidence            346999999988888887767654  3333333333222 1  122446777888775444 4332 2     544432 


Q ss_pred             CCCCCEEEEEE----ccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCC
Q 014977          121 DHQSRCIGEFA----FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL  194 (415)
Q Consensus       121 ~~~~~~~~~~~----~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  194 (415)
                      ...|+.-....    +...+..+.+.+++..++  .++.|+.- ...++.-...... ....+..+.+.+++.++++ + 
T Consensus       105 ~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S-~DgG~tW~~~~~~-~~~~~~~~~~~~~~~~~~~-g-  180 (327)
T 2xbg_A          105 TDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRT-KDSGKNWQALVQE-AIGVMRNLNRSPSGEYVAV-S-  180 (327)
T ss_dssp             SSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEE-SSTTSSEEEEECS-CCCCEEEEEECTTSCEEEE-E-
T ss_pred             CCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCCccEEEE-cCCCCCCEEeecC-CCcceEEEEEcCCCcEEEE-E-
Confidence            23343322222    234567777766665555  34544321 1223222222211 1124556666667777655 4 


Q ss_pred             ccCeEEE-EEcCCcceEEE-ecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecC--CCcccEEEEEeC
Q 014977          195 QRGQVRI-EHFGLNMIKLI-NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRG--VDRAEIYSIALS  270 (415)
Q Consensus       195 ~dg~v~i-~~~~~~~~~~~-~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~--~~~~~v~~l~~s  270 (415)
                      .+|.+.. ++..+..-..+ ......+..+.+.+++++++ ++.+|. +++.+...++.-..+...  .....+.++.+.
T Consensus       181 ~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~-~~~~G~-~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~  258 (327)
T 2xbg_A          181 SRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWM-IVNGGK-IAFSDPDNSENWGELLSPLRRNSVGFLDLAYR  258 (327)
T ss_dssp             TTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEE-EETTTE-EEEEETTEEEEECCCBCTTSSCCSCEEEEEES
T ss_pred             CCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEE-EeCCce-EEEecCCCCCeeEeccCCcccCCcceEEEEec
Confidence            4566655 44323322222 23456788899999987664 455777 777643224433223221  122358899999


Q ss_pred             CCCCEEEEEeCCCeE
Q 014977          271 PNVQWLAVASDKGTV  285 (415)
Q Consensus       271 pdg~~l~s~s~dg~i  285 (415)
                      +++.+++++. +|.|
T Consensus       259 ~~~~~~~~g~-~g~i  272 (327)
T 2xbg_A          259 TPNEVWLAGG-AGAL  272 (327)
T ss_dssp             SSSCEEEEES-TTCE
T ss_pred             CCCEEEEEeC-CCeE
Confidence            8887766654 6655

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.06  E-value=0.0083  Score=59.23  Aligned_cols=227  Identities=7%  Similarity=-0.074  Sum_probs=136.2

Q ss_pred             CEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEc-cC
Q 014977           57 GCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAF-RS  134 (415)
Q Consensus        57 ~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~-~~  134 (415)
                      .+|+.+..+.|+..++++........+ .+-.....+.|++ ++.++.+....     +.|..+++........+.. ..
T Consensus         7 ~~Ll~s~~~~I~~i~l~~~~~~~~~~~-~~~~~~~~l~~d~~~~~lywtD~~~-----~~I~r~~~~g~~~~~v~~~g~~   80 (628)
T 4a0p_A            7 AFLLFSRRADIRRISLETNNNNVAIPL-TGVKEASALDFDVTDNRIYWTDISL-----KTISRAFMNGSALEHVVEFGLD   80 (628)
T ss_dssp             CEEEEEETTEEEEEESSCTTCEEECCC-CSCSCEEEEEEETTTTEEEEEETTT-----TEEEEEETTSCSCEEEECSSCS
T ss_pred             cEEEEEeCCcEEEEECCCCCcceEEEc-CCCCceEEEEEECCCCEEEEEECCC-----CeEEEEECCCCCcEEEEeCCCC
Confidence            356666778899999986543332222 2334577888887 45555555444     8999999765544333432 24


Q ss_pred             ceeEEEEcCC-eEE-EE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeC-CccCeEEEEEcCCcce
Q 014977          135 DVRSVKLSRD-RIV-VV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG-LQRGQVRIEHFGLNMI  209 (415)
Q Consensus       135 ~i~~l~~~~~-~~~-~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~dg~v~i~~~~~~~~  209 (415)
                      ....|++.+. +++ ++  ..+.|.+.++........+....  .....++.+|....|..+- ...+.|...+.++...
T Consensus        81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l--~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~  158 (628)
T 4a0p_A           81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDL--DSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER  158 (628)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSC--CCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred             CcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCC--CCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce
Confidence            5778888754 333 33  45789999986433222222222  2345666665433444432 2355677677777666


Q ss_pred             EEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEE
Q 014977          210 KLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFS  289 (415)
Q Consensus       210 ~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd  289 (415)
                      ..+...-.....|++++++..|+.+......|..+|+..... ..+..  ......+|++.. +.++++-...+.|...|
T Consensus       159 ~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~--~l~~P~glav~~-~~ly~tD~~~~~I~~~d  234 (628)
T 4a0p_A          159 TTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIAD--DLPHPFGLTQYQ-DYIYWTDWSRRSIERAN  234 (628)
T ss_dssp             EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEE--CCSCEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred             EEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeec--cCCCceEEEEEC-CEEEEecCCCCEEEEEE
Confidence            665555567789999998777776665443399999865443 33333  223456787765 44444555577888888


Q ss_pred             ceeccc
Q 014977          290 LRVRVV  295 (415)
Q Consensus       290 ~~~~~~  295 (415)
                      ..+++.
T Consensus       235 k~tg~~  240 (628)
T 4a0p_A          235 KTSGQN  240 (628)
T ss_dssp             TTTCCS
T ss_pred             CCCCCc
Confidence            666653

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.02  E-value=0.0042  Score=58.93  Aligned_cols=249  Identities=7%  Similarity=-0.021  Sum_probs=134.1

Q ss_pred             ceEEEEEeC-CCCEEEEEe--CCcEEEEEccCCceeEEEecc-CCCeeEEEEee-------eCCeE-EEEecCCCCC-CC
Q 014977           46 ELISVSWNQ-DYGCFAAGT--SCGFRIYNCEPFKETFRRDLK-SGGFRIVEMLF-------RCNIL-ALVGAGDNSQ-YP  112 (415)
Q Consensus        46 ~V~~l~~sp-~g~~la~g~--d~~v~iw~~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~~~-~l~s~~~d~~-~~  112 (415)
                      ....|+|.| +...|.++.  .+.|++.|.+........... ..-.....++|       ++++. ++++...+.. ..
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            578999999 455555555  456777777764433222211 12235777888       88775 4444332100 00


Q ss_pred             CCeEEEEECCC-CCEE-----EEEEccCceeEEEEcC-CeEEEE---eCCeEEEEEcC-------Ccee-----------
Q 014977          113 PTKVIIWDDHQ-SRCI-----GEFAFRSDVRSVKLSR-DRIVVV---LEHKIYVYSFV-------DLKL-----------  164 (415)
Q Consensus       113 ~~~i~vwd~~~-~~~~-----~~~~~~~~i~~l~~~~-~~~~~~---~d~~i~iwd~~-------~~~~-----------  164 (415)
                      ...|.+.+... ++..     ..+..-.....++++| ++.+.+   .++.|+.+|+.       ++..           
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~  299 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT  299 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred             CceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence            02366665333 2221     2232223456788899 455444   57889999987       5543           


Q ss_pred             eeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCc--ce---EEEecC---c------------cceE-EEE
Q 014977          165 LHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN--MI---KLINAH---D------------SHIA-CFT  223 (415)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~--~~---~~~~~~---~------------~~i~-~l~  223 (415)
                      ...+...........+++++++..|.++-.....|+..+.++.  .+   ..+-+.   .            .... .++
T Consensus       300 ~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~  379 (496)
T 3kya_A          300 FKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVF  379 (496)
T ss_dssp             EEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEE
T ss_pred             cceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEE
Confidence            1122111111234566667777654444456677777444332  11   223221   0            1233 444


Q ss_pred             eC-------CCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCC-------------Cc---------ccEEEEEeCCC-C
Q 014977          224 LT-------LDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGV-------------DR---------AEIYSIALSPN-V  273 (415)
Q Consensus       224 ~s-------p~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~-------------~~---------~~v~~l~~spd-g  273 (415)
                      ..       ++|.++++=..+.. |+.++ .+|.. .++.+..             ..         .....|+++++ |
T Consensus       380 vd~~~~~~~~~g~lyVaD~~N~r-Ir~i~-~~G~v-~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g  456 (496)
T 3kya_A          380 VKNPDYTGEEEYDFYFVDRLNFC-VRKVT-PEGIV-STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKE  456 (496)
T ss_dssp             EECTTCCSSCCEEEEEEEGGGTE-EEEEC-TTCBE-EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTT
T ss_pred             EccccccccCCCeEEEEECCCCE-EEEEe-CCCCE-EEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCC
Confidence            54       45666665556667 99998 56744 4443310             01         24678999997 7


Q ss_pred             CEEEEEeCCCeEEEEEceecccCC
Q 014977          274 QWLAVASDKGTVHIFSLRVRVVGE  297 (415)
Q Consensus       274 ~~l~s~s~dg~i~vwd~~~~~~~~  297 (415)
                      .++++=+....|+.++++......
T Consensus       457 ~lyVaD~~N~rIrki~~~~~~~~~  480 (496)
T 3kya_A          457 MFYVHDQVGHTIRTISMEQEENVA  480 (496)
T ss_dssp             EEEEEETTTTEEEEEEECCCC---
T ss_pred             EEEEEeCCCCEEEEEECCCCcccc
Confidence            766666677899999998776543

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.96  E-value=0.0071  Score=52.16  Aligned_cols=198  Identities=10%  Similarity=0.119  Sum_probs=119.5

Q ss_pred             eccCCCeeEEEEeeeCC-eEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEcc--CceeEEEEcCCeEEEE---eCCeEE
Q 014977           82 DLKSGGFRIVEMLFRCN-ILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFR--SDVRSVKLSRDRIVVV---LEHKIY  155 (415)
Q Consensus        82 ~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~--~~i~~l~~~~~~~~~~---~d~~i~  155 (415)
                      .+.+-...+..++++++ +.+++....+     +.|...|.. ++.++.+...  .....|++.+++.+++   .++.+.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~-----~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~   94 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKP-----AAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIY   94 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETT-----EEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCC-----CeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEE
Confidence            45455556888999975 4455444444     899999987 9988888743  5788999999988866   467899


Q ss_pred             EEEcCCcee---eeEEec----cCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC----cceEEEec-------Ccc
Q 014977          156 VYSFVDLKL---LHQIET----LANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL----NMIKLINA-------HDS  217 (415)
Q Consensus       156 iwd~~~~~~---~~~~~~----~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~----~~~~~~~~-------~~~  217 (415)
                      ++++.....   +.....    .......-.+++++.+..|.++. ......++..++    ..+..+..       +..
T Consensus        95 ~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~-E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~  173 (255)
T 3qqz_A           95 VISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFK-EKNPIEVYKVNGLLSSNELHISKDKALQRQFTLD  173 (255)
T ss_dssp             EEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEE-ESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSS
T ss_pred             EEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEE-CcCCceEEEEcccccCCceeeecchhhccccccC
Confidence            998855432   222221    11122345666666553343323 333334433322    12222211       233


Q ss_pred             ceEEEEeCCCCCE-EEEEeCCCcEEEEEECCCCcEEEEEecC--CC-----cccEEEEEeCCCCCEEEEEeCCCeEEEEE
Q 014977          218 HIACFTLTLDGLL-LATASTRGTLIRIFNTVDGTRLQEVRRG--VD-----RAEIYSIALSPNVQWLAVASDKGTVHIFS  289 (415)
Q Consensus       218 ~i~~l~~sp~g~~-l~s~s~dg~~I~vwd~~~~~~~~~~~~~--~~-----~~~v~~l~~spdg~~l~s~s~dg~i~vwd  289 (415)
                      .+.+++++|.... ++....... +.++|. .|+.+..+.-.  .+     -...-.|+|.++|+ |+..++.+.+++|.
T Consensus       174 d~S~l~~dp~tg~lliLS~~s~~-L~~~d~-~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~  250 (255)
T 3qqz_A          174 DVSGAEFNQQKNTLLVLSHESRA-LQEVTL-VGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFT  250 (255)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTE-EEEECT-TCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEE
T ss_pred             CceeEEEcCCCCeEEEEECCCCe-EEEEcC-CCCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEE
Confidence            5689999996554 444555555 999996 56666555431  11     12568999999998 45557777666654

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.91  E-value=0.0015  Score=65.05  Aligned_cols=233  Identities=9%  Similarity=-0.042  Sum_probs=120.3

Q ss_pred             CCceEEEEEeCCCCEEEEEe--CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecC-CCCCCCCCeEEEEE
Q 014977           44 EIELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAG-DNSQYPPTKVIIWD  120 (415)
Q Consensus        44 ~~~V~~l~~sp~g~~la~g~--d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~~~~~~i~vwd  120 (415)
                      .....++++..+++++++|+  +..+.+||..+..-.....+...... ..+...+++.+++.|+ .+.......+.+||
T Consensus       242 ~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~-~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd  320 (656)
T 1k3i_A          242 DMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGY-QSSATMSDGRVFTIGGSWSGGVFEKNGEVYS  320 (656)
T ss_dssp             CCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSS-CEEEECTTSCEEEECCCCCSSSCCCCEEEEE
T ss_pred             CCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccc-cceEEecCCeEEEEeCcccCCcccccceEeC
Confidence            33444677889999999998  56799999876543222222121111 2333445666666666 33222235799999


Q ss_pred             CCCCCEEEEE----E-c-----------cCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCC-------Cc
Q 014977          121 DHQSRCIGEF----A-F-----------RSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLAN-------LR  175 (415)
Q Consensus       121 ~~~~~~~~~~----~-~-----------~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~-------~~  175 (415)
                      ..+++....-    . .           ...+..+-. .++..+.  ....+..||..+............       +.
T Consensus       321 ~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg-~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~  399 (656)
T 1k3i_A          321 PSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGW-KKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAM  399 (656)
T ss_dssp             TTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEEC-GGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCB
T ss_pred             CCCCcceeCCCccccccccccccceeecCCceEEEEC-CCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCC
Confidence            8887644320    0 0           011111111 1222222  245788899877654333222111       11


Q ss_pred             ceEEEec-CCCceEEEEeCCccC-----------eEEEEEcCCcceEEEe---cCccc-eEEEEeCCCCCEEEEEeCC--
Q 014977          176 GLCCLSH-HSSTSVLACPGLQRG-----------QVRIEHFGLNMIKLIN---AHDSH-IACFTLTLDGLLLATASTR--  237 (415)
Q Consensus       176 ~~~~~~~-~~~~~~l~~~g~~dg-----------~v~i~~~~~~~~~~~~---~~~~~-i~~l~~sp~g~~l~s~s~d--  237 (415)
                      ...++.+ ..+++++++ |+.++           .|.+++.....-..+.   ..... -.+++..|+|++++.|+.+  
T Consensus       400 ~~~av~~~~~~~~i~v~-GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~  478 (656)
T 1k3i_A          400 CGNAVMYDAVKGKILTF-GGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRG  478 (656)
T ss_dssp             TCEEEEEETTTTEEEEE-CCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBC
T ss_pred             CCceEeccCCCCeEEEE-eCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccC
Confidence            1222221 224566666 44322           3444554443333322   11222 2355667899999998854  


Q ss_pred             ---------CcEEEEEECCCCcEEEEEec-CCCcccEEEEEeCCCCCEEEEEeC
Q 014977          238 ---------GTLIRIFNTVDGTRLQEVRR-GVDRAEIYSIALSPNVQWLAVASD  281 (415)
Q Consensus       238 ---------g~~I~vwd~~~~~~~~~~~~-~~~~~~v~~l~~spdg~~l~s~s~  281 (415)
                               .. +.+||..+.+-.. +.. ...........+.|||++++.|+.
T Consensus       479 ~~~~~~~~~~~-v~~ydp~t~~W~~-~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          479 IPFEDSTPVFT-PEIYVPEQDTFYK-QNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             CTTCCCSBCCC-CEEEEGGGTEEEE-CCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             cCcCCCCcccc-eEEEcCCCCceee-cCCCCCccccccHhhcCCCcEEEecCCC
Confidence                     45 8999987765432 221 101112234556799999999885

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.91  E-value=0.0066  Score=54.50  Aligned_cols=202  Identities=11%  Similarity=-0.015  Sum_probs=113.9

Q ss_pred             ceEEEEEeCCCCEEEEEe--CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCeEEEEECC
Q 014977           46 ELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDDH  122 (415)
Q Consensus        46 ~V~~l~~sp~g~~la~g~--d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~i~vwd~~  122 (415)
                      .+.+++|.+....|....  .+.|..++.+........ +...-.....+++.+ .+.++++-...     +.|.++++.
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~-~~~~l~~p~glavd~~~g~ly~~d~~~-----~~I~~~~~d  109 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNV-VVSGLLSPDGLACDWLGEKLYWTDSET-----NRIEVSNLD  109 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEE-EEECCSCCCEEEEETTTTEEEEEETTT-----TEEEEEETT
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEE-EcCCCCCccEEEEEcCCCeEEEEECCC-----CEEEEEECC
Confidence            467889998666665555  778888888754211110 101111233455553 44444444433     889999976


Q ss_pred             CCCEEEEEE-ccCceeEEEEcCC-eEEEE-e---CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCcc
Q 014977          123 QSRCIGEFA-FRSDVRSVKLSRD-RIVVV-L---EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR  196 (415)
Q Consensus       123 ~~~~~~~~~-~~~~i~~l~~~~~-~~~~~-~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  196 (415)
                      .......+. .......+++.|. +.+.. .   .+.|+.+++.. .....+.. ........+++++++..|..+-...
T Consensus       110 G~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~-~~l~~Pnglavd~~~~~lY~aD~~~  187 (318)
T 3sov_A          110 GSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIIN-SEIYWPNGLTLDYEEQKLYWADAKL  187 (318)
T ss_dssp             SCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-CSCEEEEC-SSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             CCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-CCeEEEEE-CCCCCccEEEEeccCCEEEEEECCC
Confidence            543332232 3456789999985 44333 2   46788888753 32222211 1112345566665444555555567


Q ss_pred             CeEEEEEcCCcceEEEec-CccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEec
Q 014977          197 GQVRIEHFGLNMIKLINA-HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR  257 (415)
Q Consensus       197 g~v~i~~~~~~~~~~~~~-~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~  257 (415)
                      +.|...+.++...+.+.. .......+++.. +.++.+-...+. |..+|..+|+....+..
T Consensus       188 ~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~-V~~~~~~~G~~~~~i~~  247 (318)
T 3sov_A          188 NFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHS-ILACNKYTGEGLREIHS  247 (318)
T ss_dssp             TEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTE-EEEEETTTCCSCEEEEC
T ss_pred             CEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCe-EEEEECCCCCceEEEeC
Confidence            888887777755554432 344556777743 334445445566 88888877776655543

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.81  E-value=0.02  Score=52.65  Aligned_cols=231  Identities=16%  Similarity=0.148  Sum_probs=147.9

Q ss_pred             EEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeee-CCeEEEEecCCCCCCCCCeEEEEECCC-CCE
Q 014977           49 SVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFR-CNILALVGAGDNSQYPPTKVIIWDDHQ-SRC  126 (415)
Q Consensus        49 ~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~s~~~d~~~~~~~i~vwd~~~-~~~  126 (415)
                      +.-.+|..+.+|.=....+.|||+++..++....+   ...++-+.|- ++...+++.        ..|.-|++.. ..+
T Consensus        70 sAIMnP~~~iiALrag~~lQiFnle~K~klks~~~---~e~VvfWkWis~~~l~lVT~--------taVyHWsi~~~s~P  138 (494)
T 1bpo_A           70 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM---TDDVTFWKWISLNTVALVTD--------NAVYHWSMEGESQP  138 (494)
T ss_dssp             EEEECSSSSCEEEEETTEEEEEETTTTEEEEEEEC---SSCCCEEEEEETTEEEEECS--------SEEEEEESSSSCCC
T ss_pred             eeeeCCCCcEEEEecCCeEEEEchHHhhhhcceec---CCCceEEEecCCCeEEEEcC--------CeeEEecccCCCCc
Confidence            45567888888876688999999998776665554   2245566664 566677773        7899999864 456


Q ss_pred             EEEEE-c----cCceeEEEEcCCeEEEE----------eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCce-EEE
Q 014977          127 IGEFA-F----RSDVRSVKLSRDRIVVV----------LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS-VLA  190 (415)
Q Consensus       127 ~~~~~-~----~~~i~~l~~~~~~~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~  190 (415)
                      ++.+. |    ...|..-..+++.++++          ..|.+.+|..+. +..+.+++|........+.-++... +++
T Consensus       139 ~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~  217 (494)
T 1bpo_A          139 VKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFC  217 (494)
T ss_dssp             EEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEEEECCSEEEEEEEECTTCSSEEEEEE
T ss_pred             hhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-cccchheeeeeeeEEEecCCCCCCceEEE
Confidence            66666 2    45677778889988876          257788998754 4455666665422211121122112 222


Q ss_pred             EeC--CccCeEEEEEcCCc-----c--eEEEe------cCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEE
Q 014977          191 CPG--LQRGQVRIEHFGLN-----M--IKLIN------AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEV  255 (415)
Q Consensus       191 ~~g--~~dg~v~i~~~~~~-----~--~~~~~------~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~  255 (415)
                      ++.  ...+.++|-.....     .  .+...      ...+-..++..++.-..+..-+.-|. |++||+.++.++..-
T Consensus       218 fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~-i~lyDleTgt~i~~n  296 (494)
T 1bpo_A          218 FAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGY-IHLYDLETGTCIYMN  296 (494)
T ss_dssp             EEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSE-EEEEETTTCCEEEEE
T ss_pred             EEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCce-EEEEecccceeeeee
Confidence            211  12256777443221     1  11111      12334557888887778888899999 999999999999877


Q ss_pred             ecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977          256 RRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (415)
Q Consensus       256 ~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  294 (415)
                      +-  ....|..-+-+....=++.....|.|.--.+++..
T Consensus       297 rI--s~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~  333 (494)
T 1bpo_A          297 RI--SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN  333 (494)
T ss_dssp             EC--CSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred             cc--cCCceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence            65  45567666665555556677788977777766554

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.80  E-value=0.0014  Score=68.83  Aligned_cols=221  Identities=11%  Similarity=0.146  Sum_probs=144.1

Q ss_pred             CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcC
Q 014977           64 SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSR  143 (415)
Q Consensus        64 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~  143 (415)
                      ...|.|.|+.......++..     ..-+...+|...+++--..      ..+.|+|+++.+.++.+.....|.--.|-.
T Consensus        47 ~~~vvIidl~~~~~~~rrpi-----~AdsAIMnP~~~iiALrag------~~lQiFnl~~k~klks~~~~e~VvfWkWis  115 (1630)
T 1xi4_A           47 QAQVVIIDMNDPSNPIRRPI-----SADSAIMNPASKVIALKAG------KTLQIFNIEMKSKMKAHTMTDDVTFWKWIS  115 (1630)
T ss_pred             CceEEEEECCCCCCcccccc-----cchhhccCCCcceEEEecC------CeEEEeehHHhhhhcccccCCCceEEEecC
Confidence            44688888887555444333     2222334565555554432      899999999999999888877887777755


Q ss_pred             C-eEEEEeCCeEEEEEcCC-ceeeeEEeccC--CCcceEEEecCCCceEEEEeCC------ccCeEEEEEcCCcceEEEe
Q 014977          144 D-RIVVVLEHKIYVYSFVD-LKLLHQIETLA--NLRGLCCLSHHSSTSVLACPGL------QRGQVRIEHFGLNMIKLIN  213 (415)
Q Consensus       144 ~-~~~~~~d~~i~iwd~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~g~------~dg~v~i~~~~~~~~~~~~  213 (415)
                      + ..-++.+..|+-|++.. ..+.+.+..|.  ....++.+..+++.++++..|-      -.|.+.++....+..+.+.
T Consensus       116 ~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~ie  195 (1630)
T 1xi4_A          116 LNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIE  195 (1630)
T ss_pred             CCeeEEEcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhh
Confidence            4 44455999999999963 34444444332  2346778888888888876653      4578888888888888888


Q ss_pred             cCccceEEEEeCC--C-CCEEEEEeC---CCcEEEEEECCCC---cEE-----EE--EecCCCcccEEEEEeCCCCCEEE
Q 014977          214 AHDSHIACFTLTL--D-GLLLATAST---RGTLIRIFNTVDG---TRL-----QE--VRRGVDRAEIYSIALSPNVQWLA  277 (415)
Q Consensus       214 ~~~~~i~~l~~sp--~-g~~l~s~s~---dg~~I~vwd~~~~---~~~-----~~--~~~~~~~~~v~~l~~spdg~~l~  277 (415)
                      +|.+....+....  . ..+++.+..   .+. ++|-++...   ...     ..  +.......-..++..++.-..+.
T Consensus       196 gha~~F~~~~~~~~~~~~~l~~f~~~~~~g~k-Lhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy  274 (1630)
T 1xi4_A          196 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGK-LHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVF  274 (1630)
T ss_pred             HhHhhhheeccCCCCCCceEEEEEEecCCCce-EEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEE
Confidence            8877766555432  1 234443332   245 888888432   111     01  11100112334677788778888


Q ss_pred             EEeCCCeEEEEEceecccC
Q 014977          278 VASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       278 s~s~dg~i~vwd~~~~~~~  296 (415)
                      ..+.-|.|++||+.++.+.
T Consensus       275 ~itk~G~~~~~d~~t~~~i  293 (1630)
T 1xi4_A          275 LITKYGYIHLYDLETGTCI  293 (1630)
T ss_pred             EEecCceEEEEecccchhh
Confidence            9999999999999999864

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.69  E-value=0.036  Score=56.12  Aligned_cols=204  Identities=7%  Similarity=-0.099  Sum_probs=112.0

Q ss_pred             CCceEEEEEeCCCCEEEEEe--CCcEEEEEccCCce--eEEEeccCCCeeEEEEeeeCC-eEEEEecCCCCCCCCCeEEE
Q 014977           44 EIELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKE--TFRRDLKSGGFRIVEMLFRCN-ILALVGAGDNSQYPPTKVII  118 (415)
Q Consensus        44 ~~~V~~l~~sp~g~~la~g~--d~~v~iw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~~~~~~i~v  118 (415)
                      ...+..|+|.+....|....  .+.|+.++++....  .....+...-.....++++.. +.++++-...     +.|.+
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~-----~~I~v  497 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVL-----GTVSV  497 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTT-----TEEEE
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCC-----CeEEE
Confidence            45578899998666665555  67788888764211  111112112222334455532 2444444433     89999


Q ss_pred             EECCCCCEEEEEE-ccCceeEEEEcCC-eEEEEe----CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEe
Q 014977          119 WDDHQSRCIGEFA-FRSDVRSVKLSRD-RIVVVL----EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP  192 (415)
Q Consensus       119 wd~~~~~~~~~~~-~~~~i~~l~~~~~-~~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  192 (415)
                      .++........+. ......+|++.|. +.+...    .+.|.+.++........+.....  ....++.++.+..|+++
T Consensus       498 ~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~--~P~GLavD~~~~~LYwa  575 (791)
T 3m0c_C          498 ADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ--WPNGITLDLLSGRLYWV  575 (791)
T ss_dssp             EETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCS--CEEEEEEETTTTEEEEE
T ss_pred             EeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCC--CceEEEEecCCCeEEEE
Confidence            9976554433333 3456889999986 444442    26788888864433333332222  44455555433344444


Q ss_pred             CCccCeEEEEEcCCcceEEEecC---ccceEEEEeCCCCCEEEEEe-CCCcEEEEEECCCCcEEEEEec
Q 014977          193 GLQRGQVRIEHFGLNMIKLINAH---DSHIACFTLTLDGLLLATAS-TRGTLIRIFNTVDGTRLQEVRR  257 (415)
Q Consensus       193 g~~dg~v~i~~~~~~~~~~~~~~---~~~i~~l~~sp~g~~l~s~s-~dg~~I~vwd~~~~~~~~~~~~  257 (415)
                      -...+.|...+..+.....+...   -.....|++.  +..|+.+. ..+. |...|..+|+.+..+..
T Consensus       576 D~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~-I~~~dk~tG~~~~~l~~  641 (791)
T 3m0c_C          576 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEA-IFSANRLTGSDVNLLAE  641 (791)
T ss_dssp             ETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTE-EEEEETTTCCCCEEEEC
T ss_pred             eCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCE-EEEEeCCCCcceEEeec
Confidence            45567788877777665555432   2234466663  33455444 4455 88888778876656543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.66  E-value=0.0074  Score=56.67  Aligned_cols=152  Identities=7%  Similarity=-0.008  Sum_probs=92.8

Q ss_pred             ceeEEEEcC--CeEEEE-e-CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccC----eEEEEEcCC
Q 014977          135 DVRSVKLSR--DRIVVV-L-EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRG----QVRIEHFGL  206 (415)
Q Consensus       135 ~i~~l~~~~--~~~~~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg----~v~i~~~~~  206 (415)
                      ....|+++|  ++.+.+ . .+.|+.+|+..++...... ..  .....+++++++..|+++...++    .+.+....+
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~--~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g  214 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GL--SKVRTICWTHEADSMIITNDQNNNDRPNNYILTRES  214 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CC--SCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGG
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CC--CCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCC
Confidence            457889997  355444 2 3789999987765443333 22  24566777777775555443222    233344333


Q ss_pred             cce--EEEecCccceEEEEeCC-CCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEE-EeCC
Q 014977          207 NMI--KLINAHDSHIACFTLTL-DGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAV-ASDK  282 (415)
Q Consensus       207 ~~~--~~~~~~~~~i~~l~~sp-~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s-~s~d  282 (415)
                      ...  ..+.. ......++++| +|.++++-..++. |..++...+......... .......|+|+|+|++|+. -...
T Consensus       215 ~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~-V~~~~~~~~~~~~~~~~~-~~~~P~gia~~pdG~~lyv~d~~~  291 (430)
T 3tc9_A          215 GFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQ-VFRYDFTTQETTPLFTIQ-DSGWEFHIQFHPSGNYAYIVVVNQ  291 (430)
T ss_dssp             TSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTE-EEEEETTTTEEEEEEECS-SSSCCEEEEECTTSSEEEEEETTT
T ss_pred             ceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCE-EEEEECCCCcEEEEEEcC-CCCcceeEEEcCCCCEEEEEECCC
Confidence            322  23332 33456788999 7776666666777 999998766543233321 2235678999999995554 4566


Q ss_pred             CeEEEEEcee
Q 014977          283 GTVHIFSLRV  292 (415)
Q Consensus       283 g~i~vwd~~~  292 (415)
                      +.|..++.+.
T Consensus       292 ~~I~~~~~d~  301 (430)
T 3tc9_A          292 HYILRSDYDW  301 (430)
T ss_dssp             TEEEEEEEET
T ss_pred             CEEEEEeCCc
Confidence            7899988764

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.65  E-value=0.0094  Score=53.09  Aligned_cols=152  Identities=4%  Similarity=0.012  Sum_probs=101.8

Q ss_pred             EEEEeeeC-CeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccC---------ceeEEEE---cCCeEEEE--e----
Q 014977           90 IVEMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRS---------DVRSVKL---SRDRIVVV--L----  150 (415)
Q Consensus        90 ~~~~~~~~-~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~---------~i~~l~~---~~~~~~~~--~----  150 (415)
                      .-+..|+. ++.++++.-..     +.|..|+...+..... ....         .+..|.+   .+++++++  .    
T Consensus        15 PE~~~wd~~~g~~~vs~l~~-----g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~a   88 (334)
T 2p9w_A           15 PEDTIYDRTRQVFYQSNLYK-----GRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKS   88 (334)
T ss_dssp             CSCEEEETTTTEEEEEETTT-----TEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTT
T ss_pred             CcCccCcCCCCEEEEEeccC-----CEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccc
Confidence            33566765 66777776555     9999999876654433 3221         4578999   68887776  2    


Q ss_pred             ----------CCeEEEEEcC---CceeeeEEecc--C---------CCcceEEEecCCCceEEEEeCCcc-CeEEEEEcC
Q 014977          151 ----------EHKIYVYSFV---DLKLLHQIETL--A---------NLRGLCCLSHHSSTSVLACPGLQR-GQVRIEHFG  205 (415)
Q Consensus       151 ----------d~~i~iwd~~---~~~~~~~~~~~--~---------~~~~~~~~~~~~~~~~l~~~g~~d-g~v~i~~~~  205 (415)
                                +..+..||+.   +++.+......  .         .......+..+++|...++ ++.. +.|...+.+
T Consensus        89 f~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt-~s~~~~~I~rV~pd  167 (334)
T 2p9w_A           89 FNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVA-FALGMPAIARVSAD  167 (334)
T ss_dssp             TCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEE-EEESSCEEEEECTT
T ss_pred             ccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEe-CCCCCCeEEEEeCC
Confidence                      4779999998   78777655421  1         1124667888888876654 4455 666666666


Q ss_pred             CcceEEEecC------ccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC
Q 014977          206 LNMIKLINAH------DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG  249 (415)
Q Consensus       206 ~~~~~~~~~~------~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~  249 (415)
                      ++.+..+...      ....+.|+++|+|.+|++....+. |..+|+.+.
T Consensus       168 G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~-L~~fD~~~p  216 (334)
T 2p9w_A          168 GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRA-LTAFDVSKP  216 (334)
T ss_dssp             SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSS-EEEEECSSS
T ss_pred             CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCe-EEEEcCCCC
Confidence            6544433211      223668999999998888877888 999998743

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.62  E-value=0.0017  Score=65.89  Aligned_cols=198  Identities=9%  Similarity=0.029  Sum_probs=106.3

Q ss_pred             eEEEEeee-CCeEEEEecCCCCCCCCCeEEEEECCCC-CEEEEEEccCceeEEEEcCCeEEEE---eC-----CeEEEEE
Q 014977           89 RIVEMLFR-CNILALVGAGDNSQYPPTKVIIWDDHQS-RCIGEFAFRSDVRSVKLSRDRIVVV---LE-----HKIYVYS  158 (415)
Q Consensus        89 ~~~~~~~~-~~~~~l~s~~~d~~~~~~~i~vwd~~~~-~~~~~~~~~~~i~~l~~~~~~~~~~---~d-----~~i~iwd  158 (415)
                      .+..+.|+ ||+..++-..+...-....|+++|+.++ +.+.. ........+.|+||++.++   .+     ..|++++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~  253 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHV  253 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-cccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEE
Confidence            67788999 9987666332210001146999999998 63211 0111245688999986665   33     3688899


Q ss_pred             cCCcee--eeEEeccCCCcceEEEecCCCceEEEEeCCc--cCeEEEEEcCCc--ce--EEEe-cCccceEEEEeCCCCC
Q 014977          159 FVDLKL--LHQIETLANLRGLCCLSHHSSTSVLACPGLQ--RGQVRIEHFGLN--MI--KLIN-AHDSHIACFTLTLDGL  229 (415)
Q Consensus       159 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~--dg~v~i~~~~~~--~~--~~~~-~~~~~i~~l~~sp~g~  229 (415)
                      +.+++.  ...+..... .....+.+++++++|++....  ...|.+.+....  ..  ..+. .......++.|+..+.
T Consensus       254 lgt~~~~~~lv~~~~~~-~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~  332 (751)
T 2xe4_A          254 MGKLQSEDVCLYEEHNP-LFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSH  332 (751)
T ss_dssp             TTSCGGGCEEEEECCCT-TCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTE
T ss_pred             CCCCchhcEEEEecCCC-ceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCE
Confidence            877642  223332222 234566777888877765422  334555555432  22  3332 3344556666554444


Q ss_pred             EEEEEeCC----CcEEEEEECCCCcEEEE-EecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEc
Q 014977          230 LLATASTR----GTLIRIFNTVDGTRLQE-VRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSL  290 (415)
Q Consensus       230 ~l~s~s~d----g~~I~vwd~~~~~~~~~-~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~  290 (415)
                      +++....+    .. |..+|+.++..... +..+.....+..+.+. .+.++++...++..+||-+
T Consensus       333 l~~~t~~~~a~~~~-L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~  396 (751)
T 2xe4_A          333 LVILTNEGGAVNHK-LLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTM  396 (751)
T ss_dssp             EEEEECTTTCTTCE-EEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEE
T ss_pred             EEEEeCCCCCCCcE-EEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEE
Confidence            44554443    24 77778765322122 2221122245666665 3345566777786554443

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.56  E-value=0.00031  Score=70.42  Aligned_cols=226  Identities=8%  Similarity=-0.081  Sum_probs=117.0

Q ss_pred             EEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCeEEEEECCC----CCEEEEEE-c
Q 014977           59 FAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQ----SRCIGEFA-F  132 (415)
Q Consensus        59 la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~i~vwd~~~----~~~~~~~~-~  132 (415)
                      |+....+.|++.++++....  ..+ .....+..+.|++ .+.++++....     +.|..+++..    ......+. .
T Consensus       380 ll~~~~~~I~~id~~~~~~~--~~~-~~~~~p~gla~d~~~~~Ly~sD~~~-----~~I~~~~~~g~~~~~~~~~~i~~~  451 (699)
T 1n7d_A          380 LFFTNRHEVRKMTLDRSEYT--SLI-PNLRNVVALDTEVASNRIYWSDLSQ-----RMICSTQLDRAHGVSSYDTVISRD  451 (699)
T ss_dssp             BCCCCTTC-CEECTTSCCEE--CCS-CCCTTCCCCEEETTTTEEEECCTTT-----TSBEEEESCCCCC-CCCCCBCCSC
T ss_pred             EEecCccceEEEeCCCCcce--eee-ccCcceEEEccccccCeEEEEecCC-----CeEEEEecCCCCCCcceEEEEeCC
Confidence            33334556677776653321  111 2222345666776 44555554443     7898998765    12111111 1


Q ss_pred             cCceeEEEEcC-CeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCc-cCeEEEEEcCCc
Q 014977          133 RSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ-RGQVRIEHFGLN  207 (415)
Q Consensus       133 ~~~i~~l~~~~-~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-dg~v~i~~~~~~  207 (415)
                      ......|++.+ .+.+.+   ..+.|.++++........+.....  ....++.++.+..|+++... .+.|...+..+.
T Consensus       452 ~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~--~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~  529 (699)
T 1n7d_A          452 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGS--KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV  529 (699)
T ss_dssp             C--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSC--CCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC
T ss_pred             CCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCC--CcceEEEccCCCcEEEcccCCCCeEEEEeCCCC
Confidence            12345677774 344433   467899999765433322222212  23344555544444443322 256776555555


Q ss_pred             ceEEEe-cCccceEEEEeCCCCCEEEEEe-CCCcEEEEEECCCCcEEEEEec-CCCcccEEEEEeCCCCCEEEEEeCCCe
Q 014977          208 MIKLIN-AHDSHIACFTLTLDGLLLATAS-TRGTLIRIFNTVDGTRLQEVRR-GVDRAEIYSIALSPNVQWLAVASDKGT  284 (415)
Q Consensus       208 ~~~~~~-~~~~~i~~l~~sp~g~~l~s~s-~dg~~I~vwd~~~~~~~~~~~~-~~~~~~v~~l~~spdg~~l~s~s~dg~  284 (415)
                      ....+. ..-.....|+|+|++..|+.+. ..+. |.++|+..... ..+.. .........|++..+ .++++....+.
T Consensus       530 ~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~-I~~~d~dG~~~-~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~  606 (699)
T 1n7d_A          530 DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS-ISSIDVNGGNR-KTILEDEKRLAHPFSLAVFED-KVFWTDIINEA  606 (699)
T ss_dssp             CCCEESCSSCSSCCCEEECTTTCCEEEEETTTTE-EEEECSSSSCC-EEECCCSSSCSSCCCCEEETT-EEEEECSTTTC
T ss_pred             CeeEEEeCCCCCccEEEEeccCCEEEEEecCCCe-EEEEccCCCce-EEEEecCCcCCCceEeEEECC-EEEEEeCCCCe
Confidence            444442 2234567899999766555544 4556 99999864333 33322 111123445666544 44455556678


Q ss_pred             EEEEEceecccCC
Q 014977          285 VHIFSLRVRVVGE  297 (415)
Q Consensus       285 i~vwd~~~~~~~~  297 (415)
                      |..++..+++...
T Consensus       607 V~~~d~~~G~~~~  619 (699)
T 1n7d_A          607 IFSANRLTGSDVN  619 (699)
T ss_dssp             EEEEETTTEEEEE
T ss_pred             EEEEEccCCCceE
Confidence            9999987766543

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.55  E-value=0.078  Score=52.28  Aligned_cols=200  Identities=9%  Similarity=-0.092  Sum_probs=116.1

Q ss_pred             CceEEEEEeCCCCEEEEEe--CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCeEEEEEC
Q 014977           45 IELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDD  121 (415)
Q Consensus        45 ~~V~~l~~sp~g~~la~g~--d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~i~vwd~  121 (415)
                      ..+..++|++.+..|..+.  ++.|..++++.........  ..-.....++++. .+.++++....     +.|.+.++
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~--~g~~~P~GlAvD~~~~~LY~tD~~~-----~~I~v~~~  109 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVE--FGLDYPEGMAVDWLGKNLYWADTGT-----NRIEVSKL  109 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--SSCSCCCEEEEETTTTEEEEEETTT-----TEEEEEET
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEe--CCCCCcceEEEEeCCCEEEEEECCC-----CEEEEEec
Confidence            4578999999777776665  7888888877533222211  2212233444443 23344444333     88999997


Q ss_pred             CCCCEEEEEE-ccCceeEEEEcC-CeEEEEe----CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCc
Q 014977          122 HQSRCIGEFA-FRSDVRSVKLSR-DRIVVVL----EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ  195 (415)
Q Consensus       122 ~~~~~~~~~~-~~~~i~~l~~~~-~~~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  195 (415)
                      ........+. .-....+|++.| .|.+...    .+.|...++...... .+...  ......++.++++..|..+-..
T Consensus       110 dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~-~l~~~--~~~P~GlalD~~~~~LY~aD~~  186 (628)
T 4a0p_A          110 DGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT-TLVPN--VGRANGLTIDYAKRRLYWTDLD  186 (628)
T ss_dssp             TSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EEECS--CSSEEEEEEETTTTEEEEEETT
T ss_pred             CCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE-EEECC--CCCcceEEEccccCEEEEEECC
Confidence            6544322232 345678999998 4555442    467888887543332 22222  2244556666554445555556


Q ss_pred             cCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEe
Q 014977          196 RGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVR  256 (415)
Q Consensus       196 dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~  256 (415)
                      .+.|...+.++.....+.........+++.. +.++++-...+. |...|..+|+....+.
T Consensus       187 ~~~I~~~d~dG~~~~v~~~~l~~P~glav~~-~~ly~tD~~~~~-I~~~dk~tg~~~~~l~  245 (628)
T 4a0p_A          187 TNLIESSNMLGLNREVIADDLPHPFGLTQYQ-DYIYWTDWSRRS-IERANKTSGQNRTIIQ  245 (628)
T ss_dssp             TTEEEEEETTSCSCEEEEECCSCEEEEEEET-TEEEEEETTTTE-EEEEETTTCCSCEEEE
T ss_pred             CCEEEEEcCCCCceEEeeccCCCceEEEEEC-CEEEEecCCCCE-EEEEECCCCCceEEEe
Confidence            7788887777655555554445556777765 444444444666 9999987776544444

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.38  E-value=0.0072  Score=56.82  Aligned_cols=152  Identities=9%  Similarity=0.072  Sum_probs=89.1

Q ss_pred             ceeEEEEcCC---eEEEEe--CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCcc---Ce-EEEEEcC
Q 014977          135 DVRSVKLSRD---RIVVVL--EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR---GQ-VRIEHFG  205 (415)
Q Consensus       135 ~i~~l~~~~~---~~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d---g~-v~i~~~~  205 (415)
                      ....|+++|+   +.+.+.  .+.|+.+|..+++...... ..  .....+++++++.++++ ....   .. +......
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~--~~P~giavd~dG~lyVa-d~~~~~~~~gv~~~~~~  215 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NI--GQCADVNFTLNGDMVVV-DDQSSDTNTGIYLFTRA  215 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CC--SCEEEEEECTTCCEEEE-ECCSCTTSEEEEEECGG
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CC--CCccEEEECCCCCEEEE-cCCCCcccceEEEEECC
Confidence            3568999984   666553  3789999987776554333 22  24556666777764433 3211   11 2222222


Q ss_pred             Ccce--EEEecCccceEEEEeCC-CCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEE-eC
Q 014977          206 LNMI--KLINAHDSHIACFTLTL-DGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVA-SD  281 (415)
Q Consensus       206 ~~~~--~~~~~~~~~i~~l~~sp-~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~-s~  281 (415)
                      ....  ..+. .......++++| +|.++++-..++. |+.+|..++.....+...........|+|+|+|++|+.+ ..
T Consensus       216 ~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~-V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~  293 (433)
T 4hw6_A          216 SGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAM-ISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNG  293 (433)
T ss_dssp             GTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSE-EEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETT
T ss_pred             CCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCE-EEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCC
Confidence            2111  1222 234456788999 7776666556777 999998878763333221122233579999999955544 45


Q ss_pred             CCeEEEEEcee
Q 014977          282 KGTVHIFSLRV  292 (415)
Q Consensus       282 dg~i~vwd~~~  292 (415)
                      .+.|+.++++.
T Consensus       294 ~~~I~~~~~d~  304 (433)
T 4hw6_A          294 KHCIYRVDYNR  304 (433)
T ss_dssp             TTEEEEEEBCT
T ss_pred             CCEEEEEeCCC
Confidence            67888888763

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.37  E-value=0.069  Score=52.56  Aligned_cols=227  Identities=9%  Similarity=-0.076  Sum_probs=121.0

Q ss_pred             EEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCeEEEEECCCCCE-EEEEEc-cC
Q 014977           58 CFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQSRC-IGEFAF-RS  134 (415)
Q Consensus        58 ~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~i~vwd~~~~~~-~~~~~~-~~  134 (415)
                      +|.-+..+.|+..+++.......... ..-.....+.|++ ++.++.+-...     +.|..+++..... ...+.. -.
T Consensus        11 ~~~~~~~~~I~~i~~~~~~~~~~~~~-~~~~~~~~ld~~~~~~~ly~sD~~~-----~~I~r~~~~g~~~~~~v~~~~~~   84 (619)
T 3s94_A           11 LLLYANRRDLRLVDATNGKENATIVV-GGLEDAAAVDFVFSHGLIYWSDVSE-----EAIKRTEFNKTESVQNVVVSGLL   84 (619)
T ss_dssp             CEEEECSSBEEEECCC---------C-BCCSCEEEEEEETTTTEEEEEETTT-----TEEEEEEC-----CEEEECSSCS
T ss_pred             eEEEeccccEEEEeCCCCcceEEEEE-cCCCceEEEEEEeCCCEEEEEECCC-----CeEEEEEccCCCceEEEEeCCCC
Confidence            45555677888888875321222222 3334567788886 45555554443     8898888765432 222222 25


Q ss_pred             ceeEEEEcCC-eEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeC-CccCeEEEEEcCCcce
Q 014977          135 DVRSVKLSRD-RIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG-LQRGQVRIEHFGLNMI  209 (415)
Q Consensus       135 ~i~~l~~~~~-~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~dg~v~i~~~~~~~~  209 (415)
                      ....|++.+. +++..   ..+.|.+.++........+.....  ....++.+|.+..|.++. ...+.|.....++...
T Consensus        85 ~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~--~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~  162 (619)
T 3s94_A           85 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELD--QPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR  162 (619)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS--CCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred             CcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCC--CCceEEEecCCCeEEEeccCCCCEEEEEECCCCce
Confidence            7889999874 44433   468899999865332222222222  233444444433344432 2245666666676655


Q ss_pred             EEEe-cCccceEEEEeCCCCCEEEEEeC-CCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEE
Q 014977          210 KLIN-AHDSHIACFTLTLDGLLLATAST-RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHI  287 (415)
Q Consensus       210 ~~~~-~~~~~i~~l~~sp~g~~l~s~s~-dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v  287 (415)
                      ..+. ..-.....|++++++..|+.+.. .+. |..+|+.. .....+... ......+|++..+ ...++-...+.|..
T Consensus       163 ~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~-I~~~~~dG-~~~~~~~~~-~~~~P~gi~~~~~-~ly~td~~~~~V~~  238 (619)
T 3s94_A          163 FIIINSEIYWPNGLTLDYEEQKLYWADAKLNF-IHKSNLDG-TNRQAVVKG-SLPHPFALTLFED-ILYWTDWSTHSILA  238 (619)
T ss_dssp             EEEECSSCSSEEEEEEETTTTEEEEEETTTCC-EEEESSSC-CEEC----------CCCEEESSS-EEEEECTTTCSEEE
T ss_pred             EEEEeCCCCCCcEEEEEccCCEEEEEeCCCCe-EEEecCCC-CccEEEEeC-CCCCceEEEEeCC-EEEEecCCCCEEEE
Confidence            5543 33456789999997666666554 456 99999854 333333211 1122356777655 44444445677888


Q ss_pred             EEceecccC
Q 014977          288 FSLRVRVVG  296 (415)
Q Consensus       288 wd~~~~~~~  296 (415)
                      .|..+++..
T Consensus       239 ~d~~tg~~~  247 (619)
T 3s94_A          239 CNKYTGEGL  247 (619)
T ss_dssp             EESSSCCCC
T ss_pred             EECCCCccc
Confidence            888777643

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.35  E-value=0.00051  Score=68.86  Aligned_cols=203  Identities=8%  Similarity=-0.074  Sum_probs=108.5

Q ss_pred             CceEEEEEeCCCCEEEEEe--CCcEEEEEccCCc--eeEEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCeEEEE
Q 014977           45 IELISVSWNQDYGCFAAGT--SCGFRIYNCEPFK--ETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIW  119 (415)
Q Consensus        45 ~~V~~l~~sp~g~~la~g~--d~~v~iw~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~i~vw  119 (415)
                      ..+..++|.+.+..|....  .+.|+.++++...  ......+.........+++.. .+.++++....     +.|.++
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~-----~~I~v~  480 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVL-----GTVSVA  480 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTT-----SCEEEE
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccC-----CeEEEE
Confidence            3466889998777777666  6788888887410  001111111111223345542 34444443333     789999


Q ss_pred             ECCCCCEEEEEE-ccCceeEEEEcCCe-EEEEe----CCeEEEEEcCCceeeeEE-eccCCCcceEEEecCCCceEEEEe
Q 014977          120 DDHQSRCIGEFA-FRSDVRSVKLSRDR-IVVVL----EHKIYVYSFVDLKLLHQI-ETLANLRGLCCLSHHSSTSVLACP  192 (415)
Q Consensus       120 d~~~~~~~~~~~-~~~~i~~l~~~~~~-~~~~~----d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~  192 (415)
                      ++........+. .......|++.|.+ .+++.    .+.|+++++... ....+ .....  ....+++++++..|.++
T Consensus       481 d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~-~~~~l~~~~l~--~PnGlavd~~~~~LY~a  557 (699)
T 1n7d_A          481 DTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQ--WPNGITLDLLSGRLYWV  557 (699)
T ss_dssp             BSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC-CCCEESCSSCS--SCCCEEECTTTCCEEEE
T ss_pred             ecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC-CeeEEEeCCCC--CccEEEEeccCCEEEEE
Confidence            976544333333 23456788998854 33332    267877776432 22222 11111  22334444433334444


Q ss_pred             CCccCeEEEEEcCCcceEEEecC---ccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEec
Q 014977          193 GLQRGQVRIEHFGLNMIKLINAH---DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR  257 (415)
Q Consensus       193 g~~dg~v~i~~~~~~~~~~~~~~---~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~  257 (415)
                      -...+.|...+..+...+.+...   ......|++..+ .++++....+. |..+|..+|+.+..+..
T Consensus       558 D~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~-V~~~d~~~G~~~~~i~~  623 (699)
T 1n7d_A          558 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEA-IFSANRLTGSDVNLLAE  623 (699)
T ss_dssp             ETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTC-EEEEETTTEEEEECCCT
T ss_pred             ecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCe-EEEEEccCCCceEEeec
Confidence            45677888877776555544321   123345555443 34444445567 99999888887766654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.32  E-value=0.041  Score=49.45  Aligned_cols=190  Identities=8%  Similarity=-0.050  Sum_probs=105.4

Q ss_pred             CCceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCC
Q 014977           44 EIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ  123 (415)
Q Consensus        44 ~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~  123 (415)
                      ...+..+.+.+++..++++.++.  ||...................+..+.+.+++.+++.+...     +..+-+| ..
T Consensus       121 ~~~~~~i~~~~~~~~~~~~~~g~--v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G-----~~~~S~d-~g  192 (327)
T 2xbg_A          121 PGSPRLIKALGNGSAEMITNVGA--IYRTKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRG-----SFYSTWE-PG  192 (327)
T ss_dssp             SSCEEEEEEEETTEEEEEETTCC--EEEESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTS-----SEEEEEC-TT
T ss_pred             CCCeEEEEEECCCCEEEEeCCcc--EEEEcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCC-----cEEEEeC-CC
Confidence            34578888888888777776664  4444333333333322334467788888888777766542     3333333 21


Q ss_pred             CCEEEEEE--ccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEecc--CCCcceEEEecCCCceEEEEeCCccC
Q 014977          124 SRCIGEFA--FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETL--ANLRGLCCLSHHSSTSVLACPGLQRG  197 (415)
Q Consensus       124 ~~~~~~~~--~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~g~~dg  197 (415)
                      ++.-..+.  ....+..+.+.+++.+++  .+|.+++.+...++.-..+...  .....+..+.+.+++.++++ + .++
T Consensus       193 G~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~-g-~~g  270 (327)
T 2xbg_A          193 QTAWEPHNRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLA-G-GAG  270 (327)
T ss_dssp             CSSCEEEECCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEE-E-STT
T ss_pred             CCceeECCCCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEE-e-CCC
Confidence            32222222  456788899988887666  5677777642223332222211  11123556666666666655 4 367


Q ss_pred             eEEEEEcCCcceEEEec---CccceEEEEeCCCCCEEEEEeCCCcEEEEEE
Q 014977          198 QVRIEHFGLNMIKLINA---HDSHIACFTLTLDGLLLATASTRGTLIRIFN  245 (415)
Q Consensus       198 ~v~i~~~~~~~~~~~~~---~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd  245 (415)
                      .+..-...++.-..+..   ....+..+.|.++++ +++++.+|. |.-++
T Consensus       271 ~i~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~-i~~~~  319 (327)
T 2xbg_A          271 ALLCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGI-LLRYV  319 (327)
T ss_dssp             CEEEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTE-EEEEC
T ss_pred             eEEEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCce-EEEEc
Confidence            67542222333222321   235678888875554 666677888 76665

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.21  E-value=0.12  Score=46.94  Aligned_cols=103  Identities=11%  Similarity=0.083  Sum_probs=58.6

Q ss_pred             CceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEec---cCCCeeEEEEeeeCC----eEEEEecCCCCCCCCCeEE
Q 014977           45 IELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDL---KSGGFRIVEMLFRCN----ILALVGAGDNSQYPPTKVI  117 (415)
Q Consensus        45 ~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~---~~~~~~~~~~~~~~~----~~~l~s~~~d~~~~~~~i~  117 (415)
                      ..-..++|.|+|+++++-..+.|.+++ +. .......+   .........++++++    +.++++......-..+.|.
T Consensus        31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~-~g-~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIAERPGRIRLFR-EG-RLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             SCEEEEEECTTSCEEEEETTTEEEEEE-TT-EEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             CCceEEEEcCCCeEEEEeCCCeEEEEE-CC-CccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence            356799999999966665588888888 32 22111111   123456788899997    4444443211000014677


Q ss_pred             EEECCCCCE-----E-EEEEc----cCceeEEEEcCCeEEEE
Q 014977          118 IWDDHQSRC-----I-GEFAF----RSDVRSVKLSRDRIVVV  149 (415)
Q Consensus       118 vwd~~~~~~-----~-~~~~~----~~~i~~l~~~~~~~~~~  149 (415)
                      .++...++.     + ..+..    ......|+|.|||.+.+
T Consensus       109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv  150 (352)
T 2ism_A          109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYV  150 (352)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEE
T ss_pred             EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEE
Confidence            777664421     1 11211    12346899999997766

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.18  E-value=0.13  Score=46.61  Aligned_cols=187  Identities=14%  Similarity=0.149  Sum_probs=104.7

Q ss_pred             EEEEeeeCCeEEEEecCCC-CC------CCCCeEEEEECCCC-CEEEEEEc--------cCceeEEEEcC--Ce--EEEE
Q 014977           90 IVEMLFRCNILALVGAGDN-SQ------YPPTKVIIWDDHQS-RCIGEFAF--------RSDVRSVKLSR--DR--IVVV  149 (415)
Q Consensus        90 ~~~~~~~~~~~~l~s~~~d-~~------~~~~~i~vwd~~~~-~~~~~~~~--------~~~i~~l~~~~--~~--~~~~  149 (415)
                      .-++...+++.++++++.. |.      -.+|.|.++|+.+. .....+..        ......|.+.+  ++  .+++
T Consensus        52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V  131 (355)
T 3sre_A           52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  131 (355)
T ss_dssp             CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence            3344556778777776310 00      02499999998742 12233332        13667777755  33  2333


Q ss_pred             -----eCCeEEEEEcCCc-e---eeeEEeccCCCcceEEEecCCCceEEEEeCC----------------ccCeEEEEEc
Q 014977          150 -----LEHKIYVYSFVDL-K---LLHQIETLANLRGLCCLSHHSSTSVLACPGL----------------QRGQVRIEHF  204 (415)
Q Consensus       150 -----~d~~i~iwd~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~----------------~dg~v~i~~~  204 (415)
                           .+..|.+|++... +   .+..+.. ........+..++++.+.+....                ..|.|.-++.
T Consensus       132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g-~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~  210 (355)
T 3sre_A          132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRH-KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  210 (355)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECC-TTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred             EECCCCCCeEEEEEEECCCCEEEEEecccc-CCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence                 2567888877442 2   2223332 22234556666677776554210                1233333333


Q ss_pred             CCcceEEEecCccceEEEEeCCCCCEEEEEeC-CCcEEEEEECCC-CcE--EEEEecCCCcccEEEEEeCC-CCCEEEEE
Q 014977          205 GLNMIKLINAHDSHIACFTLTLDGLLLATAST-RGTLIRIFNTVD-GTR--LQEVRRGVDRAEIYSIALSP-NVQWLAVA  279 (415)
Q Consensus       205 ~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~-dg~~I~vwd~~~-~~~--~~~~~~~~~~~~v~~l~~sp-dg~~l~s~  279 (415)
                        ..+..+...-...+.++|+||++.|+.+.. .+. |..|++.. ++.  ...+.   ..+..-.+++.+ +|++.+++
T Consensus       211 --~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~-I~~~~~~~~g~l~~~~~~~---~~g~PDGi~vD~e~G~lwva~  284 (355)
T 3sre_A          211 --NDVRVVAEGFDFANGINISPDGKYVYIAELLAHK-IHVYEKHANWTLTPLRVLS---FDTLVDNISVDPVTGDLWVGC  284 (355)
T ss_dssp             --TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTE-EEEEEECTTSCEEEEEEEE---CSSEEEEEEECTTTCCEEEEE
T ss_pred             --CeEEEeecCCcccCcceECCCCCEEEEEeCCCCe-EEEEEECCCCcEecCEEEe---CCCCCceEEEeCCCCcEEEEe
Confidence              234444434456789999999998777665 455 99999863 432  22342   345678889998 58877766


Q ss_pred             eCCC
Q 014977          280 SDKG  283 (415)
Q Consensus       280 s~dg  283 (415)
                      ..++
T Consensus       285 ~~~g  288 (355)
T 3sre_A          285 HPNG  288 (355)
T ss_dssp             ESCH
T ss_pred             cCCc
Confidence            5443

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.12  E-value=0.026  Score=50.26  Aligned_cols=157  Identities=13%  Similarity=0.099  Sum_probs=100.5

Q ss_pred             CceeEEEEcC-CeEEEE---eCCeEEEEEcCCceeeeE-Eec----cCCCcceEEEec---CCCceEEEEeC--------
Q 014977          134 SDVRSVKLSR-DRIVVV---LEHKIYVYSFVDLKLLHQ-IET----LANLRGLCCLSH---HSSTSVLACPG--------  193 (415)
Q Consensus       134 ~~i~~l~~~~-~~~~~~---~d~~i~iwd~~~~~~~~~-~~~----~~~~~~~~~~~~---~~~~~~l~~~g--------  193 (415)
                      ....+++|++ ++.+.+   ..++|..||...+..... +..    .........+.+   +++++++++.-        
T Consensus        13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~   92 (334)
T 2p9w_A           13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFA   92 (334)
T ss_dssp             CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTT
T ss_pred             cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccc
Confidence            3445678876 455555   589999999875543332 221    111224467777   67777776522        


Q ss_pred             ----CccCeEEEEEcC----CcceEEEe--cC-----------ccceEEEEeCCCCCEEEEEeCC-CcEEEEEECCCCcE
Q 014977          194 ----LQRGQVRIEHFG----LNMIKLIN--AH-----------DSHIACFTLTLDGLLLATASTR-GTLIRIFNTVDGTR  251 (415)
Q Consensus       194 ----~~dg~v~i~~~~----~~~~~~~~--~~-----------~~~i~~l~~sp~g~~l~s~s~d-g~~I~vwd~~~~~~  251 (415)
                          +.+..|..++..    ++.+....  ..           ......++..++|+..++++.. +. |..++. .|+.
T Consensus        93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~-I~rV~p-dG~~  170 (334)
T 2p9w_A           93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPA-IARVSA-DGKT  170 (334)
T ss_dssp             SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCE-EEEECT-TSCC
T ss_pred             ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCe-EEEEeC-CCCE
Confidence                014556666766    55554443  11           1247899999999999988888 88 877775 4443


Q ss_pred             EEEEec----CCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEcee
Q 014977          252 LQEVRR----GVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV  292 (415)
Q Consensus       252 ~~~~~~----~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~  292 (415)
                      +..+..    .......+.|+++|+|..|++....|.|..+|+.+
T Consensus       171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          171 VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            333321    11122367999999999998887799999999884

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.09  E-value=0.033  Score=52.83  Aligned_cols=155  Identities=12%  Similarity=0.094  Sum_probs=88.7

Q ss_pred             ceeEEEEcCC--eEEEE-e--CCeEEEEEcCCceeeeEEeccC-CCcceEEEec-------CCCceEEEEeCCccC----
Q 014977          135 DVRSVKLSRD--RIVVV-L--EHKIYVYSFVDLKLLHQIETLA-NLRGLCCLSH-------HSSTSVLACPGLQRG----  197 (415)
Q Consensus       135 ~i~~l~~~~~--~~~~~-~--d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~-------~~~~~~l~~~g~~dg----  197 (415)
                      ....|+|+|.  +.+++ .  .+.|++.|+.++.....+.... .......+++       ++++..|+++...++    
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            3568899983  44444 2  3578889988766655443322 1123566666       777765555443331    


Q ss_pred             e--EEEEEcCC--cce-----EEEecCccceEEEEeCCC-CCEEEEEeCCCcEEEEEECC-------CCcE---------
Q 014977          198 Q--VRIEHFGL--NMI-----KLINAHDSHIACFTLTLD-GLLLATASTRGTLIRIFNTV-------DGTR---------  251 (415)
Q Consensus       198 ~--v~i~~~~~--~~~-----~~~~~~~~~i~~l~~sp~-g~~l~s~s~dg~~I~vwd~~-------~~~~---------  251 (415)
                      .  |.+.+...  ...     ..+... .....++++|+ +.++++-..++. |..+|+.       ++..         
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~-V~r~d~~~~~~~~~tg~~~tp~~~~~~  297 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQ-VFRLDLVDYFKTIKNGGSWDPIVKNNP  297 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTE-EEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred             CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCE-EEEEecccccccccCceeecccccccc
Confidence            2  33433222  211     223222 23457888994 555556667777 9999987       5543         


Q ss_pred             --EEE-EecCCCcccEEEEEeCCCCCEEEEE-eCCCeEEEEEcee
Q 014977          252 --LQE-VRRGVDRAEIYSIALSPNVQWLAVA-SDKGTVHIFSLRV  292 (415)
Q Consensus       252 --~~~-~~~~~~~~~v~~l~~spdg~~l~s~-s~dg~i~vwd~~~  292 (415)
                        ... +... .......|+|+|+|++|+.+ +....|+.++...
T Consensus       298 g~~~~l~~~~-~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg  341 (496)
T 3kya_A          298 NTFKQLFTIA-DPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE  341 (496)
T ss_dssp             TTEEEEEECS-SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             cccceeEecC-CCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence              222 2221 23456899999999965544 4566788866543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.01  E-value=0.31  Score=47.96  Aligned_cols=223  Identities=8%  Similarity=-0.031  Sum_probs=123.8

Q ss_pred             EEEEEeCCcEEEEEccCCcee-EEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE-ccC
Q 014977           58 CFAAGTSCGFRIYNCEPFKET-FRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRS  134 (415)
Q Consensus        58 ~la~g~d~~v~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~  134 (415)
                      +|+.+..+.|+..++++.... ....+ ..-....++.|++ ++.++.+....     +.|..+++........+. .-.
T Consensus       319 ~Ll~~~~~~i~~i~l~~~~~~~~~~~~-~~l~~~~~ld~d~~~~~ly~sD~~~-----~~I~r~~~~g~~~~~v~~~~~~  392 (619)
T 3s94_A          319 LLLLARRTDLRRISLDTPDFTDIVLQL-EDIRHAIAIDYDPVEGYIYWTDDEV-----RAIRRSFIDGSGSQFVVTAQIA  392 (619)
T ss_dssp             EEEEEESSCEEEEESSSTTCCCEECCC-SCCSSEEEEEEETTTTEEEEEETTT-----TEEEEEETTSCSCEEEECSSCS
T ss_pred             EEEEEcccceEEEecCCCccceeEEec-cccCccEEEEEEcCCCeEEEEeCCC-----CeEEEEEcCCCccEEEEECCCC
Confidence            566666667777777654321 22122 2234467888887 45555554444     889999976544333333 235


Q ss_pred             ceeEEEEcC-CeEE-EE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeC-CccCeEEEEEcCCcce
Q 014977          135 DVRSVKLSR-DRIV-VV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG-LQRGQVRIEHFGLNMI  209 (415)
Q Consensus       135 ~i~~l~~~~-~~~~-~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~dg~v~i~~~~~~~~  209 (415)
                      ....+++.. .+.+ ++  ..+.|.+.++.... ...+.. ........++.+|....|..+. +....|.....++...
T Consensus       393 ~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~-~~~l~~-~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~  470 (619)
T 3s94_A          393 HPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM-RKILIS-EDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDR  470 (619)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEC-TTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred             CcCceEEecccCcEEEEeCCCCcEEEEeCCCCe-EEEEEE-CCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCcc
Confidence            677888875 3333 33  45789999876443 333321 1122455666666433343432 2235666666666554


Q ss_pred             EEEe-cCccceEEEEeCCCCCEEEEEeCC-CcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEE-eCCCeEE
Q 014977          210 KLIN-AHDSHIACFTLTLDGLLLATASTR-GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVA-SDKGTVH  286 (415)
Q Consensus       210 ~~~~-~~~~~i~~l~~sp~g~~l~s~s~d-g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~-s~dg~i~  286 (415)
                      ..+. ..-...+.|++++++..|+.+... +. |..+++........+..  .-....+|+...+  +|+.. ...+.|.
T Consensus       471 ~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~-I~~~~~dG~~~~~~~~~--~l~~P~glav~~~--~ly~tD~~~~~I~  545 (619)
T 3s94_A          471 VVLVNTSLGWPNGLALDYDEGKIYWGDAKTDK-IEVMNTDGTGRRVLVED--KIPHIFGFTLLGD--YVYWTDWQRRSIE  545 (619)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEESSSCCCEEEEEC--CCCSSCCEEEETT--EEEEECTTSSCEE
T ss_pred             EEEEeCCCCCCeeeEEcccCCEEEEEECCCCE-EEEEecCCCceEEEecc--CCCCcEEEEEECC--EEEEeecCCCeEE
Confidence            4443 334567899999877777766654 55 99999854333222222  1112345555433  44444 3455677


Q ss_pred             EEEceec
Q 014977          287 IFSLRVR  293 (415)
Q Consensus       287 vwd~~~~  293 (415)
                      ..+..++
T Consensus       546 ~~~k~~g  552 (619)
T 3s94_A          546 RVHKRSA  552 (619)
T ss_dssp             EEESSSC
T ss_pred             EEEcCCC
Confidence            7776666

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.00  E-value=0.36  Score=48.71  Aligned_cols=231  Identities=14%  Similarity=0.122  Sum_probs=129.6

Q ss_pred             CCceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCC
Q 014977           44 EIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ  123 (415)
Q Consensus        44 ~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~  123 (415)
                      ...|.+|.-..+|.+ -.|+...+..||-..... +...-......+.++....++.+.++..       .-+..||..+
T Consensus        21 ~n~V~~I~qD~~G~l-WigT~~GL~ryDG~~~~~-~~~~~~~~~~~i~~i~~d~~g~lWigT~-------~Gl~~yd~~~   91 (758)
T 3ott_A           21 ASVVSCFLQDSEGLI-WIGSNKGLFSYDGYSTQQ-HFTYGENNNTRIYCGVIIDNTYLYMGTD-------NGILVYNYRA   91 (758)
T ss_dssp             CCCEEEEEECTTSCE-EEEESSCEEEECSSCEEE-CSCTTSTTSSCEEEEEEETTTEEEEEET-------TEEEEEETTT
T ss_pred             cceEEEEEECCCCCE-EEEECCCccccCCCceEE-EEccCCCCCceEEEEEEcCCCcEEEEeC-------CCeEEEeCCC
Confidence            566999988888754 455645566676432111 1000011234577777777776666543       4578999777


Q ss_pred             CCEEEEEE-ccCceeEEEEcCCeEEEEeCCeEEEEEcCCceeeeEEec---cCCCcceEEEecCCCceEEEEeCCccCeE
Q 014977          124 SRCIGEFA-FRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIET---LANLRGLCCLSHHSSTSVLACPGLQRGQV  199 (415)
Q Consensus       124 ~~~~~~~~-~~~~i~~l~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~g~~dg~v  199 (415)
                      .+...... ....|.++....+..+++..+.+..||..+++.. .+..   ......+.++..+.++.+.+.+  .+| +
T Consensus        92 ~~f~~~~~~~~~~i~~i~~~~g~lWigt~~Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWigt--~~G-l  167 (758)
T 3ott_A           92 DRYEQPETDFPTDVRTMALQGDTLWLGALNGLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIRTKDNQIYVGT--YNG-L  167 (758)
T ss_dssp             TEECCCSCCCCSCEEEEEEETTEEEEEETTEEEEEETTTCCEE-EECHHHHCCSCSCEEEEEECTTCCEEEEE--TTE-E
T ss_pred             CEEECcccCCCceEEEEEecCCcEEEEcCCcceeEeCCCCeEE-EeccCCCCcCCCeEEEEEEcCCCCEEEEe--CCC-H
Confidence            64322101 2335677665444444446668999998765433 2311   1112246677777677666543  344 4


Q ss_pred             EEEEcCCcceEEEecC------ccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCC
Q 014977          200 RIEHFGLNMIKLINAH------DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNV  273 (415)
Q Consensus       200 ~i~~~~~~~~~~~~~~------~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg  273 (415)
                      ..++........+...      ...|.++...+++..|..|+. +. +..+|..+++.. .+... ....|.++....+|
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~G-l~~~~~~~~~~~-~~~~l-~~~~i~~i~~d~~g  243 (758)
T 3ott_A          168 CRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GY-LFQYFPSTGQIK-QTEAF-HNNSIKSLALDGNG  243 (758)
T ss_dssp             EEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EE-EEEEETTTTEEE-EEEEE-EEEEEEEEEECTTC
T ss_pred             hhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CC-CeEEcCCCCeEE-eccCC-CCCeEEEEEEcCCC
Confidence            4444444333333211      224788888777765555654 46 889998776543 22211 23468888888888


Q ss_pred             CEEEEEeCCCeEEEEEceec
Q 014977          274 QWLAVASDKGTVHIFSLRVR  293 (415)
Q Consensus       274 ~~l~s~s~dg~i~vwd~~~~  293 (415)
                      .+.+ |+.+| +.+++..++
T Consensus       244 ~lWi-gT~~G-l~~~~~~~~  261 (758)
T 3ott_A          244 DLLA-GTDNG-LYVYHNDTT  261 (758)
T ss_dssp             CEEE-EETTE-EEEECCTTS
T ss_pred             CEEE-EeCCc-eeEEecCCC
Confidence            7554 45555 778876554

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.98  E-value=0.19  Score=45.16  Aligned_cols=186  Identities=13%  Similarity=0.171  Sum_probs=101.5

Q ss_pred             CCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCe--------EEEEecCC--CCCCCCCeEEEEEC--
Q 014977           55 DYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNI--------LALVGAGD--NSQYPPTKVIIWDD--  121 (415)
Q Consensus        55 ~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~l~s~~~--d~~~~~~~i~vwd~--  121 (415)
                      ...+++... .+.+.+||++ ++.+..  +..+..  ..+...++.        ..+++...  +     +.|.+|++  
T Consensus        39 ~~s~ii~t~k~~gL~Vydl~-G~~l~~--~~~g~~--nnVD~r~~~~l~g~~~dla~as~R~~~~-----n~l~vf~iDp  108 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSLD-GKMLHS--YNTGKL--NNVDIRYDFPLNGKKVDIAAASNRSEGK-----NTIEIYAIDG  108 (355)
T ss_dssp             GGCEEEEEETTTEEEEEETT-SCEEEE--ECCSCE--EEEEEEEEEEETTEEEEEEEEEECSTTC-----CEEEEEEECT
T ss_pred             CccEEEEEcCCCCEEEEcCC-CcEEEE--ccCCCc--ccEEEecccccCCceEeEEEEeCCCCCC-----CeEEEEEECC
Confidence            334544434 8899999994 344433  222322  222222222        34555544  4     89999976  


Q ss_pred             CCCCEEEEEE-------cc-CceeEEEE--cCC-eE-EEE---eCCeEEEEEcC-------CceeeeEEeccCCCcceEE
Q 014977          122 HQSRCIGEFA-------FR-SDVRSVKL--SRD-RI-VVV---LEHKIYVYSFV-------DLKLLHQIETLANLRGLCC  179 (415)
Q Consensus       122 ~~~~~~~~~~-------~~-~~i~~l~~--~~~-~~-~~~---~d~~i~iwd~~-------~~~~~~~~~~~~~~~~~~~  179 (415)
                      .+++ +..+.       .. ..+..+++  ++. +. +++   .++.+..|++.       +.+.++++.....   .-.
T Consensus       109 ~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq---~Eg  184 (355)
T 3amr_A          109 KNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQ---TEG  184 (355)
T ss_dssp             TTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSC---EEE
T ss_pred             CCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCC---cce
Confidence            3443 44442       11 56677887  663 43 233   57899999882       3456677765442   334


Q ss_pred             EecCCCceEEEEeCCccCeEEEEEcCC------cceEEEe-cC-ccceEEEEe--CCCCC-EEEEEe-CCCcEEEEEECC
Q 014977          180 LSHHSSTSVLACPGLQRGQVRIEHFGL------NMIKLIN-AH-DSHIACFTL--TLDGL-LLATAS-TRGTLIRIFNTV  247 (415)
Q Consensus       180 ~~~~~~~~~l~~~g~~dg~v~i~~~~~------~~~~~~~-~~-~~~i~~l~~--sp~g~-~l~s~s-~dg~~I~vwd~~  247 (415)
                      +..++....|.+ +.++.-|..++...      +.+..+. ++ ...+..|++  .++|+ +|++++ .+.. ..+||..
T Consensus       185 cvvDd~~g~Lyv-~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s-~~Vydr~  262 (355)
T 3amr_A          185 MAADDEYGRLYI-AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSS-YAIYDRQ  262 (355)
T ss_dssp             EEEETTTTEEEE-EETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTE-EEEEESS
T ss_pred             EEEcCCCCeEEE-ecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCE-EEEEECC
Confidence            444444444544 44553333333221      1222221 12 236777777  56666 666555 5567 9999996


Q ss_pred             -CCcEEEEEe
Q 014977          248 -DGTRLQEVR  256 (415)
Q Consensus       248 -~~~~~~~~~  256 (415)
                       +.+.+..|.
T Consensus       263 ~~~~~vg~f~  272 (355)
T 3amr_A          263 GKNKYVADFR  272 (355)
T ss_dssp             TTCCEEEEEE
T ss_pred             CCCcEEEEEE
Confidence             677777775

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.96  E-value=0.072  Score=49.01  Aligned_cols=137  Identities=13%  Similarity=0.150  Sum_probs=87.7

Q ss_pred             EEeCCeEEEEEcCCceeeeEEeccC--CCcceEEEecCCCceEEEEeCCccCeEEEEEcC-C---c---------ceEEE
Q 014977          148 VVLEHKIYVYSFVDLKLLHQIETLA--NLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG-L---N---------MIKLI  212 (415)
Q Consensus       148 ~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~-~---~---------~~~~~  212 (415)
                      ++.++.||.-++......+.+....  ....+..+..+|+|.+||..|  +..|.|-... .   .         ..+.+
T Consensus        37 ~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g--~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty  114 (452)
T 3pbp_A           37 FIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN--DNEIFVMEVPWGYSNVEDVSIQDAFQIFHY  114 (452)
T ss_dssp             EEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC--SSEEEEEECCTTCSCCCCHHHHHTTEEEEE
T ss_pred             EEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec--CCeEEEEEecCccccCcccccccccceeEE
Confidence            3378889988887544455554432  111345577778888999876  4466662222 1   0         11233


Q ss_pred             ec------CccceEEEEeCCC---CCEEEEEeCCCcEEEEEECCCC--cEEEEEec-------CCCcccEEEEEeCCCCC
Q 014977          213 NA------HDSHIACFTLTLD---GLLLATASTRGTLIRIFNTVDG--TRLQEVRR-------GVDRAEIYSIALSPNVQ  274 (415)
Q Consensus       213 ~~------~~~~i~~l~~sp~---g~~l~s~s~dg~~I~vwd~~~~--~~~~~~~~-------~~~~~~v~~l~~spdg~  274 (415)
                      .-      ...+|..+.|+|-   +..|++-..|+. |++||+...  ++. .+..       ......|.+++|..++-
T Consensus       115 ~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~-Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~l  192 (452)
T 3pbp_A          115 SIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDT-ITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGL  192 (452)
T ss_dssp             EGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSC-EEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSS
T ss_pred             EcCCcccCCCCceeEEEeccccCCCCeEEEEecCCE-EEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCc
Confidence            32      2567999999995   458999999999 999999753  222 3321       11225788999999888


Q ss_pred             EEEEEe--CCCeEEEE
Q 014977          275 WLAVAS--DKGTVHIF  288 (415)
Q Consensus       275 ~l~s~s--~dg~i~vw  288 (415)
                      .|...+  ..|.|+-.
T Consensus       193 TLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          193 TLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             CEEEEECTTSCEEEEE
T ss_pred             EEEEEecCCCCCEEEE
Confidence            777755  77866543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.78  E-value=0.29  Score=44.27  Aligned_cols=202  Identities=8%  Similarity=0.052  Sum_probs=107.8

Q ss_pred             ceEEEEEeCCCCEEEEE-------------eCCcEEEEEccCC-ceeEEEeccC-----CCeeEEEEeeeC--Ce--EEE
Q 014977           46 ELISVSWNQDYGCFAAG-------------TSCGFRIYNCEPF-KETFRRDLKS-----GGFRIVEMLFRC--NI--LAL  102 (415)
Q Consensus        46 ~V~~l~~sp~g~~la~g-------------~d~~v~iw~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~--~~--~~l  102 (415)
                      ..-.+...|+|..++++             .+|.|.++|.++. .......+.+     .......+.+..  ++  .++
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            34456678888777765             3788999998732 1222222212     223444455433  22  333


Q ss_pred             EecCCCCCCCCCeEEEEECCCC-CEEE---EEEc--cCceeEEEEcCCeEEEE-eC-------------------CeEEE
Q 014977          103 VGAGDNSQYPPTKVIIWDDHQS-RCIG---EFAF--RSDVRSVKLSRDRIVVV-LE-------------------HKIYV  156 (415)
Q Consensus       103 ~s~~~d~~~~~~~i~vwd~~~~-~~~~---~~~~--~~~i~~l~~~~~~~~~~-~d-------------------~~i~i  156 (415)
                      +.....   ....|.+|++..+ ....   .+.+  -...+++.+.++|.+.+ .+                   +.|+.
T Consensus       131 Vvnh~~---~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr  207 (355)
T 3sre_A          131 VVNHPG---SSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY  207 (355)
T ss_dssp             EEECST---TCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred             EEECCC---CCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence            332221   1278888876553 2222   2222  34678999999988766 11                   34555


Q ss_pred             EEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC--c--ceEEEecCccceEEEEeCC-CCCEE
Q 014977          157 YSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL--N--MIKLINAHDSHIACFTLTL-DGLLL  231 (415)
Q Consensus       157 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~--~--~~~~~~~~~~~i~~l~~sp-~g~~l  231 (415)
                      +|.  ++. ..+.....  ....++++|+++.+.++.+..+.|..++...  .  ..+.+ ........+++.+ +|++.
T Consensus       208 ~d~--~~~-~~~~~~l~--~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lw  281 (355)
T 3sre_A          208 YSP--NDV-RVVAEGFD--FANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLW  281 (355)
T ss_dssp             ECT--TCC-EEEEEEES--SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEE
T ss_pred             EEC--CeE-EEeecCCc--ccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEE
Confidence            553  332 22221111  3445566667766666566678888866542  1  12233 2345677899999 59987


Q ss_pred             EEEeCCCcEEEEEECC--CCcEEEEEe
Q 014977          232 ATASTRGTLIRIFNTV--DGTRLQEVR  256 (415)
Q Consensus       232 ~s~s~dg~~I~vwd~~--~~~~~~~~~  256 (415)
                      +++..++..|..|+..  .+..+..+.
T Consensus       282 va~~~~g~~v~~~~P~~~~~s~v~rI~  308 (355)
T 3sre_A          282 VGCHPNGMRIFFYDAENPPGSEVLRIQ  308 (355)
T ss_dssp             EEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred             EEecCCceEEEEECCCCCCCCEEEEEE
Confidence            7666554214445543  244555554

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.69  E-value=0.21  Score=46.04  Aligned_cols=98  Identities=13%  Similarity=0.128  Sum_probs=68.3

Q ss_pred             ccCeEEEEEcC-CcceEEEecC----ccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCc------------EEEEEec
Q 014977          195 QRGQVRIEHFG-LNMIKLINAH----DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT------------RLQEVRR  257 (415)
Q Consensus       195 ~dg~v~i~~~~-~~~~~~~~~~----~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~------------~~~~~~~  257 (415)
                      .++.||.-... ....+.+...    -..|..+..+|+|++||..+.. . |.|-.+..+.            ..+.+.-
T Consensus        39 ~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~-V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l  116 (452)
T 3pbp_A           39 QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-E-IFVMEVPWGYSNVEDVSIQDAFQIFHYSI  116 (452)
T ss_dssp             ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-E-EEEEECCTTCSCCCCHHHHHTTEEEEEEG
T ss_pred             ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC-e-EEEEEecCccccCcccccccccceeEEEc
Confidence            35678874433 4445555543    2367889999999999998765 5 8888887331            1223332


Q ss_pred             CC----CcccEEEEEeCCC---CCEEEEEeCCCeEEEEEceecc
Q 014977          258 GV----DRAEIYSIALSPN---VQWLAVASDKGTVHIFSLRVRV  294 (415)
Q Consensus       258 ~~----~~~~v~~l~~spd---g~~l~s~s~dg~i~vwd~~~~~  294 (415)
                      +.    ...+|..+.|+|-   +..|++-..|+.|++||+....
T Consensus       117 ~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~  160 (452)
T 3pbp_A          117 DEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQ  160 (452)
T ss_dssp             GGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTT
T ss_pred             CCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCC
Confidence            11    2457999999994   5689999999999999999843

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.68  E-value=0.34  Score=43.65  Aligned_cols=225  Identities=6%  Similarity=-0.031  Sum_probs=117.9

Q ss_pred             CCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEec----cCCCeeEEEEeeeCC----eEEEEe--cCCCCCC
Q 014977           43 DEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDL----KSGGFRIVEMLFRCN----ILALVG--AGDNSQY  111 (415)
Q Consensus        43 h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~----~~~~~~~~~~~~~~~----~~~l~s--~~~d~~~  111 (415)
                      .-..-+.++|.|||++|++-. .|.|++++.+.........+    .........++++|+    +.++++  ...+   
T Consensus        30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~---  106 (347)
T 3das_A           30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD---  106 (347)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS---
T ss_pred             CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC---
Confidence            344578999999999888887 88888887654332222111    234566788999884    444443  1222   


Q ss_pred             CCCeEEEEECCCC----------CEEE-EEE--ccCceeEEEEcCCeEEEEe----------------CCeEEEEEcCCc
Q 014977          112 PPTKVIIWDDHQS----------RCIG-EFA--FRSDVRSVKLSRDRIVVVL----------------EHKIYVYSFVDL  162 (415)
Q Consensus       112 ~~~~i~vwd~~~~----------~~~~-~~~--~~~~i~~l~~~~~~~~~~~----------------d~~i~iwd~~~~  162 (415)
                        +.|.-|.+..+          +.+. .+.  ....-..|.|.|||.+.+.                .+.|.-++.. +
T Consensus       107 --~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d-G  183 (347)
T 3das_A          107 --NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPD-G  183 (347)
T ss_dssp             --EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTT-S
T ss_pred             --CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCC-C
Confidence              56666665441          1111 121  1234567999999877662                1445444432 2


Q ss_pred             ee--------eeEE-eccCCCcceEEEecCCCceEEEEeCCccCeEEEEEc-CC------------------cceEEEec
Q 014977          163 KL--------LHQI-ETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHF-GL------------------NMIKLINA  214 (415)
Q Consensus       163 ~~--------~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~-~~------------------~~~~~~~~  214 (415)
                      +.        ...+ .++.   ....+++++++.+.++--..++.-.|... .+                  .++..+..
T Consensus       184 ~ip~~nPf~~~~i~a~G~R---Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~  260 (347)
T 3das_A          184 EPAPGNPFPGSPVYSYGHR---NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWST  260 (347)
T ss_dssp             SBCTTCSSTTCCEEEBCCS---BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECT
T ss_pred             CccCCCCCCCCeEEeeCCC---CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCC
Confidence            20        1112 2232   23445566666665543333332333211 11                  11222222


Q ss_pred             CccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcE----EEEEecCCCcccEEEEEeCCCCCEEEEEe
Q 014977          215 HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR----LQEVRRGVDRAEIYSIALSPNVQWLAVAS  280 (415)
Q Consensus       215 ~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~----~~~~~~~~~~~~v~~l~~spdg~~l~s~s  280 (415)
                      +......++|. +|.++...-..+. |....+.....    ...+.+  ....+.+++..|||.++++..
T Consensus       261 ~~~ap~G~~~~-~g~~~~~~l~~~~-l~~v~~~~~~~~~~~e~~l~~--~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          261 DEASPSGIAYA-EGSVWMAGLRGER-LWRIPLKGTAAAADPQAFLEG--EYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             TTCCEEEEEEE-TTEEEEEESTTCS-EEEEEEETTEESSCCEEESTT--TSSCEEEEEEEETTEEEEEEC
T ss_pred             CCCCCcceEEE-cCceeeccccCCE-EEEEEecCCceecceEEeecC--CCCCccEEEECCCCcEEEEEc
Confidence            22344566665 4555555545555 65556644322    112222  235789999999997666543

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.66  E-value=0.36  Score=43.74  Aligned_cols=228  Identities=11%  Similarity=0.011  Sum_probs=116.7

Q ss_pred             CceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEec---cCCCeeEEEEeeeCC----eEEEEecCC--CCCCCCCe
Q 014977           45 IELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDL---KSGGFRIVEMLFRCN----ILALVGAGD--NSQYPPTK  115 (415)
Q Consensus        45 ~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~---~~~~~~~~~~~~~~~----~~~l~s~~~--d~~~~~~~  115 (415)
                      .....++|.|+|+++++-.++.|++++.+ ....+ ..+   .........++++|+    +.++++...  ...-..+.
T Consensus        29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~~-G~~~~-~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVTERPGRLVLISPS-GKKLV-ASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             SCEEEEEEEETTEEEEEETTTEEEEECSS-CEEEE-EECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CCCeEEEEcCCCeEEEEeCCCEEEEEeCC-CceEe-eccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            45789999999986666558888888633 22111 111   123456788899986    555554321  00000035


Q ss_pred             EEEEECCCC--CE-----E-EEEE--ccCceeEEEEcCCeEEEEeC----------------CeEEEEEcCCcee-----
Q 014977          116 VIIWDDHQS--RC-----I-GEFA--FRSDVRSVKLSRDRIVVVLE----------------HKIYVYSFVDLKL-----  164 (415)
Q Consensus       116 i~vwd~~~~--~~-----~-~~~~--~~~~i~~l~~~~~~~~~~~d----------------~~i~iwd~~~~~~-----  164 (415)
                      |..|+...+  ..     + ..+.  .......|.|.|||.+.+..                +.|..++.. ++.     
T Consensus       107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d-G~~p~~np  185 (354)
T 3a9g_A          107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE-GRPPADNP  185 (354)
T ss_dssp             EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT-SCCCTTSS
T ss_pred             EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC-CCCCCCCC
Confidence            666765543  11     1 1122  11235679999999877621                355555543 221     


Q ss_pred             ---eeEE-eccCCCcceEEEecCC-CceEEEEeCCccC--eEEEEEcCC-----------------cceEEEecCccceE
Q 014977          165 ---LHQI-ETLANLRGLCCLSHHS-STSVLACPGLQRG--QVRIEHFGL-----------------NMIKLINAHDSHIA  220 (415)
Q Consensus       165 ---~~~~-~~~~~~~~~~~~~~~~-~~~~l~~~g~~dg--~v~i~~~~~-----------------~~~~~~~~~~~~i~  220 (415)
                         ...+ .++.+   ...+++++ .+.++++-...+.  .|.+-....                 .++..+........
T Consensus       186 f~~~~i~a~G~rn---p~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~  262 (354)
T 3a9g_A          186 FPNSPIWSYGHRN---PQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPS  262 (354)
T ss_dssp             STTCCEEEECCSC---CCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEE
T ss_pred             CCCCcEEEEccCC---cceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCc
Confidence               1111 22222   33455555 4444443222222  122211100                 11122211223466


Q ss_pred             EEEeC-------CCCCEEEEEeCCCcEEEEEECCCC-cEE--EEEecCCCcccEEEEEeCCCCCEEEEEe
Q 014977          221 CFTLT-------LDGLLLATASTRGTLIRIFNTVDG-TRL--QEVRRGVDRAEIYSIALSPNVQWLAVAS  280 (415)
Q Consensus       221 ~l~~s-------p~g~~l~s~s~dg~~I~vwd~~~~-~~~--~~~~~~~~~~~v~~l~~spdg~~l~s~s  280 (415)
                      .++|.       .+|.++++.-..+. |...++... +..  ..+... ....+..+++.|||.+.++..
T Consensus       263 G~~~y~g~~fp~~~G~l~v~~~~~~~-v~~~~~~~~g~~~~~~~~~~~-~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          263 GASFVHGDMFPGLRGWLLIACLRGSM-LAAVNFGDNMEVRKISTFFKN-VFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             EEEECCSSSCGGGTTEEEEEETTTTE-EEEEEECGGGCEEEEEEECTT-TSCCEEEEEECTTSCEEEEEC
T ss_pred             ceEEECCCCCcccCCcEEEEEcCCCE-EEEEEECCCCcccceeeeccC-CCCCeeEEEECCCCcEEEEEe
Confidence            78883       46766666555566 888888653 332  233221 234789999999997666654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.45  E-value=0.11  Score=55.21  Aligned_cols=231  Identities=15%  Similarity=0.157  Sum_probs=134.1

Q ss_pred             EEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCeEEEEECCC-CCEE
Q 014977           50 VSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQ-SRCI  127 (415)
Q Consensus        50 l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~i~vwd~~~-~~~~  127 (415)
                      .-.+|..+.+|.=....+.|||+++..+.....+   ...|+-+.|-. +...+++.        ..|.-|++.. ..++
T Consensus        71 AIMnP~~~iiALrag~~lQiFnl~~k~klks~~~---~e~VvfWkWis~~~l~lVT~--------~aVyHW~~~~~s~P~  139 (1630)
T 1xi4_A           71 AIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM---TDDVTFWKWISLNTVALVTD--------NAVYHWSMEGESQPV  139 (1630)
T ss_pred             hccCCCcceEEEecCCeEEEeehHHhhhhccccc---CCCceEEEecCCCeeEEEcC--------CeEEEeccCCCCccH
Confidence            3456777777766688899999998665544433   33566777754 56666763        7899999864 2444


Q ss_pred             EEEE-c----cCceeEEEEcCCeEEEE----------eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCce-EEEE
Q 014977          128 GEFA-F----RSDVRSVKLSRDRIVVV----------LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTS-VLAC  191 (415)
Q Consensus       128 ~~~~-~----~~~i~~l~~~~~~~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~  191 (415)
                      +.+. |    ...|..-..+++.++++          ..|.+.+|..+. +..+.+.+|........+.-++... ++++
T Consensus       140 k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er-~~sQ~iegha~~F~~~~~~~~~~~~~l~~f  218 (1630)
T 1xi4_A          140 KMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCF  218 (1630)
T ss_pred             HHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc-ccchhhhHhHhhhheeccCCCCCCceEEEE
Confidence            4443 2    45677777888888776          257888998754 3344455554422222222111111 2221


Q ss_pred             e--CCccCeEEEEEcCCc----ce------EEEe---cCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEe
Q 014977          192 P--GLQRGQVRIEHFGLN----MI------KLIN---AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVR  256 (415)
Q Consensus       192 ~--g~~dg~v~i~~~~~~----~~------~~~~---~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~  256 (415)
                      +  ....+.++|-.....    ..      ..+.   ....-..++..++.-..+..-+.-|. |.+||+.+|.++..-+
T Consensus       219 ~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~-~~~~d~~t~~~i~~~r  297 (1630)
T 1xi4_A          219 AVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGY-IHLYDLETGTCIYMNR  297 (1630)
T ss_pred             EEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCce-EEEEecccchhhhhcc
Confidence            1  111256666333211    11      0111   11233446777777777888888999 9999999999876544


Q ss_pred             cCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceeccc
Q 014977          257 RGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV  295 (415)
Q Consensus       257 ~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~  295 (415)
                      -  ...+|.-.+-+....=++.....|.|.--.++...-
T Consensus       298 i--s~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~i  334 (1630)
T 1xi4_A          298 I--SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI  334 (1630)
T ss_pred             c--cCCceEEeccCCCCCceEEEcCCceEEEEEEccchh
Confidence            3  344555544444333344555777666666655543

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.35  E-value=0.044  Score=49.28  Aligned_cols=108  Identities=9%  Similarity=0.093  Sum_probs=65.5

Q ss_pred             EEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEe---eeCCeEEEEec-CCCCCCCCCeEEEEECCCCCEEEEEEc
Q 014977           58 CFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEML---FRCNILALVGA-GDNSQYPPTKVIIWDDHQSRCIGEFAF  132 (415)
Q Consensus        58 ~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~s~-~~d~~~~~~~i~vwd~~~~~~~~~~~~  132 (415)
                      ++++++ ||.|.-+|.++++........ .........   ...++..++.. ..|     |.|..++..+|.....+..
T Consensus        12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~-~~~p~~~~~~~~~~~~~~~~vv~p~~d-----G~l~a~~~~~G~~~~~~~~   85 (339)
T 2be1_A           12 ILIAADVEGGLHAVDRRNGHIIWSIEPE-NFQPLIEIQEPSRLETYETLIIEPFGD-----GNIYYFNAHQGLQKLPLSI   85 (339)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECGG-GSCCSEECCCSCTTTSSEEEEECCSTT-----TEEEEEETTTEEEEEEEEH
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEecCC-ccCCcEEecCCccccCCcEEEEEECCC-----CEEEEEECCCCcEEeeecc
Confidence            566666 999888888887777765542 111111111   01133444433 444     9999999988866655552


Q ss_pred             cC-----ceeE---EEE------cCCeEEEE--eCCeEEEEEcCCceeeeEEecc
Q 014977          133 RS-----DVRS---VKL------SRDRIVVV--LEHKIYVYSFVDLKLLHQIETL  171 (415)
Q Consensus       133 ~~-----~i~~---l~~------~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~  171 (415)
                      ..     ++..   ..+      +.++.+++  .++.++..|+.+|+.+..+...
T Consensus        86 ~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~  140 (339)
T 2be1_A           86 RQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG  140 (339)
T ss_dssp             HHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred             ccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence            21     2221   001      24666666  7999999999999999888643

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.25  E-value=0.54  Score=41.20  Aligned_cols=228  Identities=15%  Similarity=0.105  Sum_probs=104.8

Q ss_pred             CCEEEEEe-C----CcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEE
Q 014977           56 YGCFAAGT-S----CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEF  130 (415)
Q Consensus        56 g~~la~g~-d----~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~  130 (415)
                      +.+++.|+ +    ..+.+||..+..-.....+....... .+.... +.+++.|+.+.......+.+||..+.+....-
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~~-~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~   93 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRA-GMVYMA-GLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA   93 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEEET-TEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccc-eEEEEC-CEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence            34555655 2    45778887765432222221111111 122223 44444444332222357899998877644332


Q ss_pred             E--ccCceeEEEEcCCeEEEE--eC-----CeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCcc-----
Q 014977          131 A--FRSDVRSVKLSRDRIVVV--LE-----HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR-----  196 (415)
Q Consensus       131 ~--~~~~i~~l~~~~~~~~~~--~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d-----  196 (415)
                      .  ....-.+++...+..+++  .+     ..+.+||+.+.+-...-..........+...  ++.++++ |+.+     
T Consensus        94 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~-GG~~~~~~~  170 (302)
T 2xn4_A           94 NMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAV-GGYDVASRQ  170 (302)
T ss_dssp             CCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEE-CCEETTTTE
T ss_pred             CCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEE-eCCCCCCCc
Confidence            2  111122333334444444  22     3688899877654322111111111112222  3445555 4332     


Q ss_pred             --CeEEEEEcCCcceEEEec---CccceEEEEeCCCCCEEEEEeCC-----CcEEEEEECCCCcEEEEEecCC-CcccEE
Q 014977          197 --GQVRIEHFGLNMIKLINA---HDSHIACFTLTLDGLLLATASTR-----GTLIRIFNTVDGTRLQEVRRGV-DRAEIY  265 (415)
Q Consensus       197 --g~v~i~~~~~~~~~~~~~---~~~~i~~l~~sp~g~~l~s~s~d-----g~~I~vwd~~~~~~~~~~~~~~-~~~~v~  265 (415)
                        ..+.+++.....-..+..   .......+.+  ++++++.|+.+     .. +.+||+.+.+-.. +.... ......
T Consensus       171 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~-~~~yd~~~~~W~~-~~~~~~~r~~~~  246 (302)
T 2xn4_A          171 CLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKS-VEVYDPTTNAWRQ-VADMNMCRRNAG  246 (302)
T ss_dssp             ECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCC-EEEEETTTTEEEE-ECCCSSCCBSCE
T ss_pred             cccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccce-EEEEeCCCCCEee-CCCCCCccccCe
Confidence              235555555433222221   1111122222  56777777754     35 8899998765432 22110 111112


Q ss_pred             EEEeCCCCCEEEEEeCCC-----eEEEEEceecc
Q 014977          266 SIALSPNVQWLAVASDKG-----TVHIFSLRVRV  294 (415)
Q Consensus       266 ~l~~spdg~~l~s~s~dg-----~i~vwd~~~~~  294 (415)
                      .+.+  ++++++.|+.++     .+.+||+++++
T Consensus       247 ~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          247 VCAV--NGLLYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             EEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             EEEE--CCEEEEECCcCCCcccccEEEEcCCCCe
Confidence            2222  667777777553     48899987664

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.21  E-value=1.6  Score=46.22  Aligned_cols=234  Identities=12%  Similarity=0.043  Sum_probs=120.8

Q ss_pred             CCceEEEEEeCC------CCEEEEEe--CCcEEEEEccCCceeEEEeccCC-CeeEEEEeeeCCeEEEEecCCCCCCCCC
Q 014977           44 EIELISVSWNQD------YGCFAAGT--SCGFRIYNCEPFKETFRRDLKSG-GFRIVEMLFRCNILALVGAGDNSQYPPT  114 (415)
Q Consensus        44 ~~~V~~l~~sp~------g~~la~g~--d~~v~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~s~~~d~~~~~~  114 (415)
                      ...|.|+++.|.      ++++|+|.  |++++|+++.+.+......+... ....+.+.......++..+-.|     |
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~d-----G  627 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGD-----G  627 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETT-----S
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCC-----C
Confidence            457999999863      36899988  89999999998776666555221 1111222222344555555554     8


Q ss_pred             eEEEEE--CCCCCEEEEEE---ccCceeEEEEcCCe--EEEE-eCCeEEEEEcCCceeeeEEeccCCCc-ceEEEecC--
Q 014977          115 KVIIWD--DHQSRCIGEFA---FRSDVRSVKLSRDR--IVVV-LEHKIYVYSFVDLKLLHQIETLANLR-GLCCLSHH--  183 (415)
Q Consensus       115 ~i~vwd--~~~~~~~~~~~---~~~~i~~l~~~~~~--~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~--  183 (415)
                      .+.-+.  ..+|+....-.   ...++.=..+...+  ..++ .+.-..+|.-+ ++.... ......+ ....|+..  
T Consensus       628 ~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s-~l~~~~v~~~~~F~se~~  705 (1158)
T 3ei3_A          628 ALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFS-NVNLKEVNYMCPLNSDGY  705 (1158)
T ss_dssp             EEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEE-EBSSSCCCEEEEECCSSS
T ss_pred             eEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEe-ccChHHhceEeccCcccC
Confidence            765544  44565543321   23344333333322  2222 45555555432 222211 1111111 23334332  


Q ss_pred             CCceEEEEeCCccCeEEEEEcC---CcceEEEecCccceEEEEeCCCCCEEEEEeC------------------------
Q 014977          184 SSTSVLACPGLQRGQVRIEHFG---LNMIKLINAHDSHIACFTLTLDGLLLATAST------------------------  236 (415)
Q Consensus       184 ~~~~~l~~~g~~dg~v~i~~~~---~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~------------------------  236 (415)
                      +++ ++++   .++.++|-...   .-.++.+. -...+..++++|+.+.++.+..                        
T Consensus       706 ~~g-~v~~---~~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  780 (1158)
T 3ei3_A          706 PDS-LALA---NNSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALS  780 (1158)
T ss_dssp             TTE-EEEE---CSSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSE
T ss_pred             CCc-EEEE---cCCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhh
Confidence            333 3333   24457773332   11222222 2345667777776664433221                        


Q ss_pred             -------------------------CCcEEEEEECCCCcEEEEEecCCCcccEEEE---EeCCC-CCEEEEEe-------
Q 014977          237 -------------------------RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSI---ALSPN-VQWLAVAS-------  280 (415)
Q Consensus       237 -------------------------dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l---~~spd-g~~l~s~s-------  280 (415)
                                               -+. |++.|-.+.+.+..+.-..+ ..+.++   .|..+ ..+|++|+       
T Consensus       781 ~~~~~~~~~~~~~~~~~~~~g~~~~~s~-i~lidp~t~~~i~~~~l~~n-E~~~sv~~v~~~~~~~~~lvVGTa~~~~~e  858 (1158)
T 3ei3_A          781 SSVSSSKLFSSSTAPHETSFGEEVEVHN-LLIIDQHTFEVLHAHQFLQN-EYALSLVSCKLGKDPNTYFIVGTAMVYPEE  858 (1158)
T ss_dssp             EEECCCCCC----------CCCEEEEEE-EEEEETTTCCEEEEEECCTT-EEEEEEEEECCTTCCCCEEEEEEEECCTTC
T ss_pred             hcccccccccccccCchhhcCCceeeEE-EEEEeCCCCeEEEEEeCCCC-cceEEEEEEEEccCCCEEEEEEeeecCCCC
Confidence                                     123 78888888887766654322 234444   45433 46888887       


Q ss_pred             ---CCCeEEEEEce
Q 014977          281 ---DKGTVHIFSLR  291 (415)
Q Consensus       281 ---~dg~i~vwd~~  291 (415)
                         ..|.|++|++.
T Consensus       859 ~~~~~Gri~vf~v~  872 (1158)
T 3ei3_A          859 AEPKQGRIVVFQYS  872 (1158)
T ss_dssp             SSCCCEEEEEEEEE
T ss_pred             CCCCceEEEEEEEE
Confidence               34789999987

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.12  E-value=0.63  Score=40.73  Aligned_cols=230  Identities=10%  Similarity=0.028  Sum_probs=106.8

Q ss_pred             CCCEEEEEe--C-----CcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCC--
Q 014977           55 DYGCFAAGT--S-----CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR--  125 (415)
Q Consensus        55 ~g~~la~g~--d-----~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~--  125 (415)
                      ++.+++.|+  +     ..+.+||..+..-.....+...... ..+....+..+++ |+.+.......+.+||+.+++  
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~~~~l~v~-GG~~~~~~~~~~~~~d~~~~~~~   91 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRY-VASVSLHDRIYVI-GGYDGRSRLSSVECLDYTADEDG   91 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBS-CEEEEETTEEEEE-CCBCSSCBCCCEEEEETTCCTTC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhcc-ccEEEECCEEEEE-cCCCCCccCceEEEEECCCCCCC
Confidence            345566555  2     3577888776443222122111111 1222233444444 443211223579999988876  


Q ss_pred             -EEEEEE--ccCceeEEEEcCCeEEEE--e-----CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCc
Q 014977          126 -CIGEFA--FRSDVRSVKLSRDRIVVV--L-----EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ  195 (415)
Q Consensus       126 -~~~~~~--~~~~i~~l~~~~~~~~~~--~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  195 (415)
                       ....-.  ....-.++....+..+++  .     ...+.+||+.+.+-...-..........+...  ++.++++ |+.
T Consensus        92 ~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~-GG~  168 (301)
T 2vpj_A           92 VWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCL-GGY  168 (301)
T ss_dssp             CCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEE-CCB
T ss_pred             eeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEE-CCC
Confidence             433322  111122233333333343  1     24689999877654332222211112222222  3455555 443


Q ss_pred             c-----CeEEEEEcCCcceEEEecC---ccceEEEEeCCCCCEEEEEeCC-----CcEEEEEECCCCcEEEEEecCCCcc
Q 014977          196 R-----GQVRIEHFGLNMIKLINAH---DSHIACFTLTLDGLLLATASTR-----GTLIRIFNTVDGTRLQEVRRGVDRA  262 (415)
Q Consensus       196 d-----g~v~i~~~~~~~~~~~~~~---~~~i~~l~~sp~g~~l~s~s~d-----g~~I~vwd~~~~~~~~~~~~~~~~~  262 (415)
                      +     ..+.+++.....-..+...   ......+.+  ++++++.|+.+     .. +.+||+.+.+-...-.......
T Consensus       169 ~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~-v~~yd~~~~~W~~~~~~p~~r~  245 (301)
T 2vpj_A          169 DGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSS-VEAYNIRTDSWTTVTSMTTPRC  245 (301)
T ss_dssp             CSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCC-EEEEETTTTEEEEECCCSSCCB
T ss_pred             CCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccce-EEEEeCCCCcEEECCCCCCccc
Confidence            3     2355566554433333211   111122222  56777777764     45 8999998775432211110111


Q ss_pred             cEEEEEeCCCCCEEEEEeCC-----CeEEEEEceecc
Q 014977          263 EIYSIALSPNVQWLAVASDK-----GTVHIFSLRVRV  294 (415)
Q Consensus       263 ~v~~l~~spdg~~l~s~s~d-----g~i~vwd~~~~~  294 (415)
                      ....+.+  ++++++.|+.+     ..|.+||+++++
T Consensus       246 ~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          246 YVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             SCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             ceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence            1222233  66777777655     357888887654

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.01  E-value=0.84  Score=41.25  Aligned_cols=238  Identities=8%  Similarity=0.009  Sum_probs=119.8

Q ss_pred             ceEEEEEeCCCC-EEEEEeCCcEEEEEccCCcee-EE---EeccCCCeeEEEEeeeCC----eEEEEecCCCCCC--CCC
Q 014977           46 ELISVSWNQDYG-CFAAGTSCGFRIYNCEPFKET-FR---RDLKSGGFRIVEMLFRCN----ILALVGAGDNSQY--PPT  114 (415)
Q Consensus        46 ~V~~l~~sp~g~-~la~g~d~~v~iw~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~----~~~l~s~~~d~~~--~~~  114 (415)
                      ....++|.|+|+ ++++-..+.|++++.+..... +.   ..+.........++++|+    +.++++......-  ...
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~   98 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT   98 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence            468999999999 665555888888875421110 00   001123345678889884    5555543210000  013


Q ss_pred             eEEEEECCCC--CE--EEE-EE-cc------CceeEEEEcCCeEEEEe--C--------------CeEEEEEcCCce---
Q 014977          115 KVIIWDDHQS--RC--IGE-FA-FR------SDVRSVKLSRDRIVVVL--E--------------HKIYVYSFVDLK---  163 (415)
Q Consensus       115 ~i~vwd~~~~--~~--~~~-~~-~~------~~i~~l~~~~~~~~~~~--d--------------~~i~iwd~~~~~---  163 (415)
                      .|..+++..+  +.  ... +. ..      .....|.|.|||.+.+.  +              +.|.-++.. ++   
T Consensus        99 ~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~d-G~~p~  177 (353)
T 2g8s_A           99 AVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQ-GEIPD  177 (353)
T ss_dssp             EEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETT-SCCCT
T ss_pred             EEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCC-CCCCC
Confidence            5666665433  11  111 11 11      22457999999977762  2              466666653 22   


Q ss_pred             ----------eeeEEe-ccCCCcceEEEecCC-CceEEEEeCCccCeEEEEEcC-C------------------------
Q 014977          164 ----------LLHQIE-TLANLRGLCCLSHHS-STSVLACPGLQRGQVRIEHFG-L------------------------  206 (415)
Q Consensus       164 ----------~~~~~~-~~~~~~~~~~~~~~~-~~~~l~~~g~~dg~v~i~~~~-~------------------------  206 (415)
                                ....+. ++.   ....+++++ .+.+.++--..++.=.|.... +                        
T Consensus       178 ~npf~~~~~~~~~i~a~G~r---np~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~  254 (353)
T 2g8s_A          178 DNPFIKESGVRAEIWSYGIR---NPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKG  254 (353)
T ss_dssp             TCTTTTSTTSCTTEEEECCS---EEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCB
T ss_pred             CCCCcCCCCCCccEEEEcCc---CccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccC
Confidence                      111121 222   345566666 455544322222111221110 0                        


Q ss_pred             -------cceEEEecCccceEEEEeCC-------CCCEEEEEeCCCcEEEEEECCCCcEEEEEecC-CCcccEEEEEeCC
Q 014977          207 -------NMIKLINAHDSHIACFTLTL-------DGLLLATASTRGTLIRIFNTVDGTRLQEVRRG-VDRAEIYSIALSP  271 (415)
Q Consensus       207 -------~~~~~~~~~~~~i~~l~~sp-------~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~-~~~~~v~~l~~sp  271 (415)
                             .++..+. +......++|..       +|.++++.-..+. |...++..++......-- .....+..+++.|
T Consensus       255 ~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~p  332 (353)
T 2g8s_A          255 EIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKD-VIVMSVNGDKVTEDGRILTDRGQRIRDVRTGP  332 (353)
T ss_dssp             SSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTE-EEEEEEETTEEEEEEEESGGGCCCEEEEEECT
T ss_pred             CCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCE-EEEEEeCCCeEeeeEEcccCCCCceeEEEECC
Confidence                   0111122 223456677753       4666666555666 888887765443322110 0224789999999


Q ss_pred             CCCEEEEEe-CCCeEEEEEce
Q 014977          272 NVQWLAVAS-DKGTVHIFSLR  291 (415)
Q Consensus       272 dg~~l~s~s-~dg~i~vwd~~  291 (415)
                      ||.++++.. .+|  +||.+.
T Consensus       333 dG~lyv~td~~~g--~I~ri~  351 (353)
T 2g8s_A          333 DGYLYVLTDESSG--ELLKVS  351 (353)
T ss_dssp             TSCEEEEECSTTE--EEEEEE
T ss_pred             CCcEEEEEeCCCC--EEEEEe
Confidence            998665433 344  566654

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=95.95  E-value=1.6  Score=43.94  Aligned_cols=235  Identities=11%  Similarity=0.021  Sum_probs=130.2

Q ss_pred             CCceEEEEEeCCCCEEEEEeCCcEEEEEccCCc--eeEEEecc-----CCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977           44 EIELISVSWNQDYGCFAAGTSCGFRIYNCEPFK--ETFRRDLK-----SGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (415)
Q Consensus        44 ~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~--~~~~~~~~-----~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i  116 (415)
                      ...|.++.-..+|.+.+. +.+.+..++..+..  ........     -....+.++....++.+.++. .      +-|
T Consensus       323 ~~~v~~i~~D~~g~lWiG-t~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt-~------~GL  394 (758)
T 3ott_A          323 GNQFYSLFRDSKGFYWFG-GANGLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIAT-D------GSI  394 (758)
T ss_dssp             CCBEEEEEECTTCCEEEE-ETTEEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEEE-T------TEE
T ss_pred             CceEEEEEEcCCCCEEEe-eCCcceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEEe-C------CcH
Confidence            346888887777775554 44456666654321  11111100     112357777777777655554 2      678


Q ss_pred             EEEECCCCCEEEEEE-------ccCceeEEEEcCCeEEEE-e-CCeEEEEEcCCc-----eee---eEEecc--CCCcce
Q 014977          117 IIWDDHQSRCIGEFA-------FRSDVRSVKLSRDRIVVV-L-EHKIYVYSFVDL-----KLL---HQIETL--ANLRGL  177 (415)
Q Consensus       117 ~vwd~~~~~~~~~~~-------~~~~i~~l~~~~~~~~~~-~-d~~i~iwd~~~~-----~~~---~~~~~~--~~~~~~  177 (415)
                      ..+|..+++......       ....|.++...+++.+.+ . .+.+.++|..+.     +..   ..+...  .....+
T Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i  474 (758)
T 3ott_A          395 NRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFI  474 (758)
T ss_dssp             EEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCE
T ss_pred             hhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceeccccccccccccccee
Confidence            899987775543221       124578888888877666 4 567889986421     111   111111  111246


Q ss_pred             EEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEecC----ccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEE
Q 014977          178 CCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAH----DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQ  253 (415)
Q Consensus       178 ~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~----~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~  253 (415)
                      .++..+.++.+.+..|...|..+ ++.....+..+...    ...+.++....+|.+.+ |+. +. +..||..+++.. 
T Consensus       475 ~~i~~d~~g~lWi~~~t~~Gl~~-~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWi-gt~-~G-l~~~~~~~~~~~-  549 (758)
T 3ott_A          475 NQIIPDNEGNVWVLLYNNKGIDK-INPRTREVTKLFADELTGEKSPNYLLCDEDGLLWV-GFH-GG-VMRINPKDESQQ-  549 (758)
T ss_dssp             EEEEECTTSCEEEEETTCSSEEE-EETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEE-EET-TE-EEEECC--CCCC-
T ss_pred             eeEEEcCCCCEEEEccCCCCcEE-EeCCCCceEEecCCCcCCCcccceEEECCCCCEEE-Eec-Cc-eEEEecCCCceE-
Confidence            77778888876653354566444 44444444444321    24577888888888655 444 45 888987665432 


Q ss_pred             EEe-cCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977          254 EVR-RGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (415)
Q Consensus       254 ~~~-~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  294 (415)
                      .+. .+.....|.++... +| .|..++..| |..||.++.+
T Consensus       550 ~~~~~gl~~~~i~~i~~~-~g-~lWi~t~~G-l~~~~~~~~~  588 (758)
T 3ott_A          550 SISFGSFSNNEILSMTCV-KN-SIWVSTTNG-LWIIDRKTMD  588 (758)
T ss_dssp             BCCCCC---CCEEEEEEE-TT-EEEEEESSC-EEEEETTTCC
T ss_pred             EecccCCCccceEEEEEC-CC-CEEEECCCC-eEEEcCCCce
Confidence            111 11122357777763 55 456666777 7788876554

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=95.79  E-value=2.5  Score=44.82  Aligned_cols=169  Identities=9%  Similarity=0.045  Sum_probs=99.5

Q ss_pred             CCCeEEEEECCCCCEEEE--EEccCceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEec-cCCCcceEEEecCCCce
Q 014977          112 PPTKVIIWDDHQSRCIGE--FAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIET-LANLRGLCCLSHHSSTS  187 (415)
Q Consensus       112 ~~~~i~vwd~~~~~~~~~--~~~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  187 (415)
                      ..|.|.++++..++....  ...++.+++++--.+ ++++ ...+|++|++...+.+. ... ....+....+....  .
T Consensus       862 ~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~~g-~Lla~ig~~l~vy~l~~~~~L~-~~~~~~~~i~~~~l~~~~--~  937 (1158)
T 3ei3_A          862 KQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNG-KLLASINSTVRLYEWTTEKELR-TECNHYNNIMALYLKTKG--D  937 (1158)
T ss_dssp             CCEEEEEEEEETTEEEEEEEEEESSCEEEEEEETT-EEEEEETTEEEEEEECTTSCEE-EEEEECCCSCEEEEEEET--T
T ss_pred             CceEEEEEEEECCEEEEEEEEEcCCcCEEEeeeCC-EEEEEcCCEEEEEECCCCceEE-EEeeccccEEEEEEeccC--C
Confidence            458999999875543322  236889999886654 5555 89999999997655443 211 11112233443322  3


Q ss_pred             EEEEeCCccCeEEE--EEcCCcceEEEec--CccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC-------cEE---E
Q 014977          188 VLACPGLQRGQVRI--EHFGLNMIKLINA--HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG-------TRL---Q  253 (415)
Q Consensus       188 ~l~~~g~~dg~v~i--~~~~~~~~~~~~~--~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~-------~~~---~  253 (415)
                      ++++ |..-..|.+  |......+..+-.  +...++++.+-.++ .++.+..+|. |.+......       +.+   .
T Consensus       938 ~I~v-gD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~-t~l~aD~~gN-l~vl~~~~~~~~~~~~~~L~~~~ 1014 (1158)
T 3ei3_A          938 FILV-GDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD-NFLGAENAFN-LFVCQKDSAATTDEERQHLQEVG 1014 (1158)
T ss_dssp             EEEE-EESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETT-EEEEEETTSE-EEEEEECTTCCSTTGGGBEEEEE
T ss_pred             EEEE-EEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccC-cEEEEcCCCc-EEEEecCCCCCCccccceeeeEE
Confidence            4554 444445555  6655544444433  45567788876554 6777889998 988876431       222   2


Q ss_pred             EEecCCCcccEEEEE---eCCCC---------CEEEEEeCCCeEEEEEc
Q 014977          254 EVRRGVDRAEIYSIA---LSPNV---------QWLAVASDKGTVHIFSL  290 (415)
Q Consensus       254 ~~~~~~~~~~v~~l~---~spdg---------~~l~s~s~dg~i~vwd~  290 (415)
                      .|.-   ...|+++.   +.+.+         ..++.++.+|.|.+.-.
T Consensus      1015 ~fhl---G~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l~p 1060 (1158)
T 3ei3_A         1015 LFHL---GEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTS 1060 (1158)
T ss_dssp             EEEC---SSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEEEE
T ss_pred             EEeC---CCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEEEE
Confidence            2332   23566665   33332         34778889998887753

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=95.42  E-value=1.4  Score=39.65  Aligned_cols=66  Identities=11%  Similarity=0.084  Sum_probs=43.3

Q ss_pred             eEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEE--EEEE----ccCceeEEEEcCC----eEEEE--e-C----
Q 014977           89 RIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCI--GEFA----FRSDVRSVKLSRD----RIVVV--L-E----  151 (415)
Q Consensus        89 ~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~--~~~~----~~~~i~~l~~~~~----~~~~~--~-d----  151 (415)
                      ....+.|.+++.++++...      +.|.+++  +++..  ..+.    .......|+++|+    +.+.+  . .    
T Consensus        32 ~P~~ia~~pdG~l~V~e~~------g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~  103 (352)
T 2ism_A           32 VPWALAFLPDGGMLIAERP------GRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGL  103 (352)
T ss_dssp             CEEEEEECTTSCEEEEETT------TEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSS
T ss_pred             CceEEEEcCCCeEEEEeCC------CeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCC
Confidence            4568889999987777543      8999998  44321  1111    1356889999998    44433  2 2    


Q ss_pred             -CeEEEEEcCCc
Q 014977          152 -HKIYVYSFVDL  162 (415)
Q Consensus       152 -~~i~iwd~~~~  162 (415)
                       +.|..|+....
T Consensus       104 ~~~v~r~~~~~~  115 (352)
T 2ism_A          104 RNQVVRLRHLGE  115 (352)
T ss_dssp             EEEEEEEEECSS
T ss_pred             ccEEEEEEeCCC
Confidence             67888887643

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=95.40  E-value=1.3  Score=38.85  Aligned_cols=227  Identities=9%  Similarity=0.030  Sum_probs=106.8

Q ss_pred             CCEEEEEe---CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE-
Q 014977           56 YGCFAAGT---SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-  131 (415)
Q Consensus        56 g~~la~g~---d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-  131 (415)
                      +.+++.|+   ...+.+||..+..-.....+....... .+....+. +++.|+.+ ......+.+||+.+++....-. 
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~~~~-lyv~GG~~-~~~~~~~~~~d~~~~~W~~~~~~   88 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDA-ACVFWDNV-VYILGGSQ-LFPIKRMDCYNVVKDSWYSKLGP   88 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSC-EEEEETTE-EEEECCBS-SSBCCEEEEEETTTTEEEEEECC
T ss_pred             ceEEEEeCCCCCceEEEecCCCCCEecCCCCCccccee-EEEEECCE-EEEEeCCC-CCCcceEEEEeCCCCeEEECCCC
Confidence            34555666   356788888764432222221111111 12223344 44444432 2233689999988876543322 


Q ss_pred             -ccCceeEEEEcCCeEEEE--eC------CeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCc-------
Q 014977          132 -FRSDVRSVKLSRDRIVVV--LE------HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ-------  195 (415)
Q Consensus       132 -~~~~i~~l~~~~~~~~~~--~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-------  195 (415)
                       ....-.++....+..+++  .+      ..+.+||..+.+-...-..............  ++.++++ |+.       
T Consensus        89 p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~-GG~~~~~~~~  165 (306)
T 3ii7_A           89 PTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVC-GGSLGNNVSG  165 (306)
T ss_dssp             SSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEE-CCEESCTTTC
T ss_pred             CccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEE-CCCCCCCCcc
Confidence             111122333334444444  22      4588999877654322111111111122222  3445555 432       


Q ss_pred             --cCeEEEEEcCCcceEEEecC---ccceEEEEeCCCCCEEEEEeCC-----CcEEEEEECCCCcEEEEEec-CCCcccE
Q 014977          196 --RGQVRIEHFGLNMIKLINAH---DSHIACFTLTLDGLLLATASTR-----GTLIRIFNTVDGTRLQEVRR-GVDRAEI  264 (415)
Q Consensus       196 --dg~v~i~~~~~~~~~~~~~~---~~~i~~l~~sp~g~~l~s~s~d-----g~~I~vwd~~~~~~~~~~~~-~~~~~~v  264 (415)
                        -..+.+++.....-..+...   ......+.+  ++++++.|+.+     .. +.+||+.+.+-. .+.. .......
T Consensus       166 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~-~~~yd~~~~~W~-~~~~~p~~r~~~  241 (306)
T 3ii7_A          166 RVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDN-VEYYDIKLNEWK-MVSPMPWKGVTV  241 (306)
T ss_dssp             EECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCC-EEEEETTTTEEE-ECCCCSCCBSCC
T ss_pred             cccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCce-EEEeeCCCCcEE-ECCCCCCCccce
Confidence              23355566555433333221   111122222  66677776643     35 889998876533 2211 0011122


Q ss_pred             EEEEeCCCCCEEEEEeCC-----CeEEEEEceecc
Q 014977          265 YSIALSPNVQWLAVASDK-----GTVHIFSLRVRV  294 (415)
Q Consensus       265 ~~l~~spdg~~l~s~s~d-----g~i~vwd~~~~~  294 (415)
                      ..+.+  ++++++.|+.+     ..+.+||+++.+
T Consensus       242 ~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          242 KCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             EEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred             eEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence            23333  66777777754     468888887754

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=95.35  E-value=1.3  Score=38.83  Aligned_cols=231  Identities=12%  Similarity=0.020  Sum_probs=104.4

Q ss_pred             CCCCEEEEEe-----CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCC---CCCCCCCeEEEEECCCCC
Q 014977           54 QDYGCFAAGT-----SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGD---NSQYPPTKVIIWDDHQSR  125 (415)
Q Consensus        54 p~g~~la~g~-----d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~---d~~~~~~~i~vwd~~~~~  125 (415)
                      -++.+++.|+     -..+.+||..+..-.....+....... .+....+..++++|..   +.......+.+||+.+.+
T Consensus        23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~  101 (308)
T 1zgk_A           23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ  101 (308)
T ss_dssp             CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred             CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence            3456666665     245788887764432221221111111 2222334444444331   211112568899988775


Q ss_pred             EEEEEE--ccCceeEEEEcCCeEEEE--e-----CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCcc
Q 014977          126 CIGEFA--FRSDVRSVKLSRDRIVVV--L-----EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR  196 (415)
Q Consensus       126 ~~~~~~--~~~~i~~l~~~~~~~~~~--~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  196 (415)
                      ....-.  ....-.++....+..+++  .     -..+.+||+.+.+-...-..........+...  ++.++++ |+.+
T Consensus       102 W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~-GG~~  178 (308)
T 1zgk_A          102 WSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAV-GGFD  178 (308)
T ss_dssp             EEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEE-CCBC
T ss_pred             EeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEE-eCCC
Confidence            433221  111112233333434444  1     24688899877643322111111111122222  3455555 4433


Q ss_pred             -----CeEEEEEcCCcceEEEec---CccceEEEEeCCCCCEEEEEeCC-----CcEEEEEECCCCcEEEEEecC-CCcc
Q 014977          197 -----GQVRIEHFGLNMIKLINA---HDSHIACFTLTLDGLLLATASTR-----GTLIRIFNTVDGTRLQEVRRG-VDRA  262 (415)
Q Consensus       197 -----g~v~i~~~~~~~~~~~~~---~~~~i~~l~~sp~g~~l~s~s~d-----g~~I~vwd~~~~~~~~~~~~~-~~~~  262 (415)
                           ..+.+++.....-..+..   .......+.+  ++++++.|+.+     .. +.+||+.+.+-.. +... ....
T Consensus       179 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~-v~~yd~~~~~W~~-~~~~p~~r~  254 (308)
T 1zgk_A          179 GTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNS-VERYDVETETWTF-VAPMKHRRS  254 (308)
T ss_dssp             SSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCC-EEEEETTTTEEEE-CCCCSSCCB
T ss_pred             CCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccce-EEEEeCCCCcEEE-CCCCCCCcc
Confidence                 235555554433222211   1111222333  66777777654     45 8999988765432 2111 0111


Q ss_pred             cEEEEEeCCCCCEEEEEeCC-----CeEEEEEceecc
Q 014977          263 EIYSIALSPNVQWLAVASDK-----GTVHIFSLRVRV  294 (415)
Q Consensus       263 ~v~~l~~spdg~~l~s~s~d-----g~i~vwd~~~~~  294 (415)
                      ....+.+  ++++++.|+.+     ..+.+||+++.+
T Consensus       255 ~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          255 ALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             SCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             ceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence            1122222  56777777644     357888887654

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.03  E-value=1.7  Score=38.30  Aligned_cols=158  Identities=8%  Similarity=-0.082  Sum_probs=82.6

Q ss_pred             CeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE--e---C--CeEEEEEcCCceeeeEEeccCCCcceEEEecCCCc
Q 014977          114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--L---E--HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSST  186 (415)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~---d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (415)
                      ..|+..++..++.......  ..  ..+++++..+.  .   +  ..|+..++.. .....+..+..    ..+.  +.+
T Consensus        88 ~~Iy~i~~dg~~~~~l~~~--~~--~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG-s~~~~lt~~~~----~~~~--~~g  156 (302)
T 3s25_A           88 NSLCRIKRNGHGSTVLDPD--PC--IYASLIGNYIYYLHYDTQTATSLYRIRIDG-EEKKKIKNHYL----FTCN--TSD  156 (302)
T ss_dssp             EEEEEEETTSCCCEEEECS--CE--EEEEEETTEEEEEEESSSSCEEEEEEETTS-CCCEEEESSCC----CCSE--EET
T ss_pred             CeEEEEeCCCCcceEeecC--Cc--cEEEEeCCEEEEEeecCCCCceEEEEECCC-CCeEEEeCCCc----eEee--EEC
Confidence            5677778766653322222  11  24555555555  3   2  3455666543 33333433221    2233  445


Q ss_pred             eEEEEeCCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCC-cEEEEEECCCCcEEEEEecCCCcccEE
Q 014977          187 SVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRG-TLIRIFNTVDGTRLQEVRRGVDRAEIY  265 (415)
Q Consensus       187 ~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg-~~I~vwd~~~~~~~~~~~~~~~~~~v~  265 (415)
                      ..|.++......|..-...+...+.+..  +... ..++|++.+|+-....+ ..|..-++..+. ...+..  .  .+ 
T Consensus       157 ~~iy~t~~g~~~Iy~~~l~g~~~~~l~~--~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~--~--~~-  227 (302)
T 3s25_A          157 RYFYYNNPKNGQLYRYDTASQSEALFYD--CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLTE--A--NI-  227 (302)
T ss_dssp             TEEEEECTTTCCEEEEETTTTEEEEEEC--SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECSC--S--CE-
T ss_pred             CEEEEEeCCCceEEEEECCCCCEEEEeC--CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEeC--C--Cc-
Confidence            5676665445677776666655555432  2222 33569998887765443 226666765444 334432  1  23 


Q ss_pred             EEEeCCCCCEEEEEeCC--CeEEEEEcee
Q 014977          266 SIALSPNVQWLAVASDK--GTVHIFSLRV  292 (415)
Q Consensus       266 ~l~~spdg~~l~s~s~d--g~i~vwd~~~  292 (415)
                       ..|+|++.+|..++..  +.|..-+++.
T Consensus       228 -~~~~~~g~~Iy~~~~~~~~~i~~~~~DG  255 (302)
T 3s25_A          228 -EHYNVYGSLIFYQRGGDNPALCVVKNDG  255 (302)
T ss_dssp             -EEEEEETTEEEEEECSSSCEEEEEETTS
T ss_pred             -ceEEECCCEEEEEECCCCcEEEEEECCC
Confidence             3478889988866433  4455555443

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=94.84  E-value=2.2  Score=38.54  Aligned_cols=193  Identities=9%  Similarity=0.002  Sum_probs=100.9

Q ss_pred             eeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCC-EEEEEE----ccCceeEEEEcCC----eEEEE--e----C-
Q 014977           88 FRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR-CIGEFA----FRSDVRSVKLSRD----RIVVV--L----E-  151 (415)
Q Consensus        88 ~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~-~~~~~~----~~~~i~~l~~~~~----~~~~~--~----d-  151 (415)
                      .....+.|.+++.++++...      +.|.+++ .+++ .+..+.    .......|+++|+    +.+.+  .    + 
T Consensus        29 ~~P~~ia~~pdG~l~V~e~~------g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~  101 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVTERP------GRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGG  101 (354)
T ss_dssp             SCEEEEEEEETTEEEEEETT------TEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGG
T ss_pred             CCCeEEEEcCCCeEEEEeCC------CEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCC
Confidence            34667889999987777543      8898887 4554 222111    1356889999997    55444  2    2 


Q ss_pred             ---CeEEEEEcCCc-------eee-eEEeccCCCcceEEEecCCCceEEEEeCCc------------cCeEEEEEcCCc-
Q 014977          152 ---HKIYVYSFVDL-------KLL-HQIETLANLRGLCCLSHHSSTSVLACPGLQ------------RGQVRIEHFGLN-  207 (415)
Q Consensus       152 ---~~i~iwd~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~------------dg~v~i~~~~~~-  207 (415)
                         +.|..|+....       +.+ ..+... .......+.+.+++.++++.|..            .|.|.-.+.+++ 
T Consensus       102 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~-~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~  180 (354)
T 3a9g_A          102 HIRNRVIRGRLDGSTFKLKEVKTLIDGIPGA-YIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRP  180 (354)
T ss_dssp             CEEEEEEEEEECSSSCCEEEEEEEEEEEECC-SSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCC
T ss_pred             CcceEEEEEEECCCCcCcCccEEEEEcCCCC-CCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCC
Confidence               56778887543       111 112211 11122345556667666655431            234443333333 


Q ss_pred             -------ceEEE-ecCccceEEEEeCC-CCCEEEEEeCCCc--EEEEEECCCCc------------------EEEEEecC
Q 014977          208 -------MIKLI-NAHDSHIACFTLTL-DGLLLATASTRGT--LIRIFNTVDGT------------------RLQEVRRG  258 (415)
Q Consensus       208 -------~~~~~-~~~~~~i~~l~~sp-~g~~l~s~s~dg~--~I~vwd~~~~~------------------~~~~~~~~  258 (415)
                             ....+ .++ .....++|+| +|+++++-...+.  .|.+..  .+.                  ++..+.. 
T Consensus       181 p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~-  256 (354)
T 3a9g_A          181 PADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGS-  256 (354)
T ss_dssp             CTTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTT-
T ss_pred             CCCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCC-
Confidence                   11122 233 2346799999 6775554332211  133322  221                  1222211 


Q ss_pred             CCcccEEEEEeC-------CCCCEEEEEeCCCeEEEEEceec
Q 014977          259 VDRAEIYSIALS-------PNVQWLAVASDKGTVHIFSLRVR  293 (415)
Q Consensus       259 ~~~~~v~~l~~s-------pdg~~l~s~s~dg~i~vwd~~~~  293 (415)
                       .......++|.       .+|.++++.-..+.|...+++..
T Consensus       257 -~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~  297 (354)
T 3a9g_A          257 -ETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDN  297 (354)
T ss_dssp             -CCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGG
T ss_pred             -CCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCC
Confidence             12356788883       46767766666677877777653

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=94.37  E-value=3.4  Score=38.72  Aligned_cols=100  Identities=8%  Similarity=0.053  Sum_probs=57.1

Q ss_pred             eEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEc---------cCceeEEEEcC----CeEEEE-e----
Q 014977           89 RIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAF---------RSDVRSVKLSR----DRIVVV-L----  150 (415)
Q Consensus        89 ~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~---------~~~i~~l~~~~----~~~~~~-~----  150 (415)
                      ....+.|.+++.++++....     +.|++++..+++.......         ...+..|+|+|    ++.+.+ .    
T Consensus        28 ~P~~~a~~pdG~l~V~e~~g-----g~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~  102 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERAT-----GKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKN  102 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTT-----CEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEEC
T ss_pred             CceEEEEcCCCcEEEEEcCC-----CEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccc
Confidence            45688899999888886553     4788887655654322221         24566999998    455444 2    


Q ss_pred             ----------CCeEEEEEcCCc--e-----eee-EEeccCCCcceEEEecCCCceEEEEeCC
Q 014977          151 ----------EHKIYVYSFVDL--K-----LLH-QIETLANLRGLCCLSHHSSTSVLACPGL  194 (415)
Q Consensus       151 ----------d~~i~iwd~~~~--~-----~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~g~  194 (415)
                                ...|.-|++...  +     .+. .+.. ........+.+++++.+.++.|.
T Consensus       103 ~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~-~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          103 PKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS-SKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             TTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC-CSSCCEEEEEECTTSCEEEEECC
T ss_pred             cCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCC-CCCCCCCeEeECCCCeEEEEECC
Confidence                      135666665321  1     111 1211 11124566777777777776664

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=93.89  E-value=2.4  Score=35.26  Aligned_cols=148  Identities=12%  Similarity=0.018  Sum_probs=86.5

Q ss_pred             CceeEEEEcCCeEEEE-eCCeEEEEEcCCcee------eeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC
Q 014977          134 SDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKL------LHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL  206 (415)
Q Consensus       134 ~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~  206 (415)
                      ..+..++|+|++.+.+ .++.++-.+..+.+.      -..+ +...-....++.+++++.+.++   .||.|+-++...
T Consensus        41 ~~~~~laf~P~G~LYaV~~G~Ly~~~~~t~~~~~W~~s~t~I-G~~Gw~~F~a~~fD~~G~LYav---~dG~iyr~~pP~  116 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGVLNDKIYKGTPPTHDNDNWMGRAKKI-GNGGWNQFQFLFFDPNGYLYAV---SKDKLYKASPPQ  116 (236)
T ss_dssp             TTCSEEEECTTSCEEEEETTEEEEESCCCSTTCCHHHHCEEE-ECSCGGGCSEEEECTTSCEEEE---ETTEEEEESCCC
T ss_pred             ccceeEEECCCccEEEEeCCeEEEECCCCCCcccccccccEe-cccccccceEEEECCCCCEEEe---CCCEEEEeCCCc
Confidence            4677999999998777 888887777644211      1111 1111112356777888877655   468886544311


Q ss_pred             --c------ceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCc------EEEEEe-cCCCcccEEEEEeCC
Q 014977          207 --N------MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT------RLQEVR-RGVDRAEIYSIALSP  271 (415)
Q Consensus       207 --~------~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~------~~~~~~-~~~~~~~v~~l~~sp  271 (415)
                        .      ....-..--..+..|.+.|+|.+.++.  |+. ++-+...++.      ....+- .  .-..-..+.|.+
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~-lyr~~~P~~~~~~wl~~~~~~g~~--g~~~yr~l~f~~  191 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQ-FYKALPPVSNQDNWLARATKIGQG--GWDTFKFLFFSS  191 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTE-EEEECCCSSTTCCHHHHCEEEESS--SGGGEEEEEECT
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCc-EEecCCCCCCCcccccccceeccC--CcceEEEEEECC
Confidence              1      111112223567999999999877766  777 6544333221      111222 2  222455677999


Q ss_pred             CCCEEEEEeCCCeEEEEEceecc
Q 014977          272 NVQWLAVASDKGTVHIFSLRVRV  294 (415)
Q Consensus       272 dg~~l~s~s~dg~i~vwd~~~~~  294 (415)
                      ++.+.++.  +|  ++|.....+
T Consensus       192 ~G~l~~v~--~g--~~Y~~~~p~  210 (236)
T 1tl2_A          192 VGTLFGVQ--GG--KFYEDYPPS  210 (236)
T ss_dssp             TSCEEEEE--TT--EEEEESCCC
T ss_pred             CCcEEEEe--CC--eEEecCCcc
Confidence            99877766  77  666665543

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=93.72  E-value=2.1  Score=40.84  Aligned_cols=99  Identities=11%  Similarity=0.059  Sum_probs=67.3

Q ss_pred             CceEEEEEeCCCCEEEEEe--CCcEEEEEccCCce-----------eEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCC
Q 014977           45 IELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKE-----------TFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQY  111 (415)
Q Consensus        45 ~~V~~l~~sp~g~~la~g~--d~~v~iw~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~  111 (415)
                      .....+.++|||+++++++  +.++.|++++....           ...... .-+.......|++++....+.--|   
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~-e~GlGPlHt~Fd~~G~aYTtlfid---  398 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEP-ELGLGPLHTTFDGRGNAYTTLFID---  398 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECC-BCCSCEEEEEECSSSEEEEEETTT---
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeec-cCCCcccEEEECCCCceEeeeeec---
Confidence            3345788999999999988  99999999984221           112222 345667888999999888887666   


Q ss_pred             CCCeEEEEECCCC----------CEEEEEEccCceeEEEE------cCCeEEEE
Q 014977          112 PPTKVIIWDDHQS----------RCIGEFAFRSDVRSVKL------SRDRIVVV  149 (415)
Q Consensus       112 ~~~~i~vwd~~~~----------~~~~~~~~~~~i~~l~~------~~~~~~~~  149 (415)
                        ..|.-|++...          ..+..+.-...+-.+..      .++|++++
T Consensus       399 --SqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv  450 (638)
T 3sbq_A          399 --SQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLV  450 (638)
T ss_dssp             --TEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEE
T ss_pred             --ceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEE
Confidence              99999997653          45555552223333332      46677766

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=93.69  E-value=0.38  Score=40.07  Aligned_cols=67  Identities=18%  Similarity=0.115  Sum_probs=42.4

Q ss_pred             cceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcE------EEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEE
Q 014977          217 SHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR------LQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFS  289 (415)
Q Consensus       217 ~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~------~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd  289 (415)
                      ..+..++|+|+|.+.++  .+|. ++-.+..+...      -..+-...-. .-..+.|.|+|.+.++  .||.|+-++
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~-Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~  113 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDK-IYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKAS  113 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTE-EEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEES
T ss_pred             ccceeEEECCCccEEEE--eCCe-EEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe--CCCEEEEeC
Confidence            46779999999997766  6777 77666544221      1122110011 1467899999998877  568776554

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=93.59  E-value=4.8  Score=37.70  Aligned_cols=105  Identities=10%  Similarity=0.046  Sum_probs=58.6

Q ss_pred             CceEEEEEeCCCCEEEEEeC-CcEEEEEccCCceeEEEecc------CCCeeEEEEeeeC----CeEEEEecCC------
Q 014977           45 IELISVSWNQDYGCFAAGTS-CGFRIYNCEPFKETFRRDLK------SGGFRIVEMLFRC----NILALVGAGD------  107 (415)
Q Consensus        45 ~~V~~l~~sp~g~~la~g~d-~~v~iw~~~~~~~~~~~~~~------~~~~~~~~~~~~~----~~~~l~s~~~------  107 (415)
                      ...+.++|.|+|+++++-.. +.|++++..+........+.      ........++++|    ++.++++...      
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            45679999999998887665 46777765443322222221      1345677899998    5555554321      


Q ss_pred             CCC-CCCCeEEEEECCCC--CE-----EEE-EE--ccCceeEEEEcCCeEEEE
Q 014977          108 NSQ-YPPTKVIIWDDHQS--RC-----IGE-FA--FRSDVRSVKLSRDRIVVV  149 (415)
Q Consensus       108 d~~-~~~~~i~vwd~~~~--~~-----~~~-~~--~~~~i~~l~~~~~~~~~~  149 (415)
                      +.. .....|.-+++..+  +.     +.. +.  .......|.|.|||.+.+
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv  159 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYY  159 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEE
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEE
Confidence            000 00135555554322  11     111 11  124578899999987776

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=93.19  E-value=4.5  Score=36.17  Aligned_cols=52  Identities=17%  Similarity=0.137  Sum_probs=27.3

Q ss_pred             EEEEECCCCcE--EEEEecCCCcccEEEEEeCCCCCEEEEEeCCC------eEEEEEceecccC
Q 014977          241 IRIFNTVDGTR--LQEVRRGVDRAEIYSIALSPNVQWLAVASDKG------TVHIFSLRVRVVG  296 (415)
Q Consensus       241 I~vwd~~~~~~--~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg------~i~vwd~~~~~~~  296 (415)
                      +.+||+.+.+-  +..+..  ....-..+.  .++++++.|+.++      .|.++++++++..
T Consensus       287 ~~~yd~~~~~W~~~~~~p~--~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~  346 (357)
T 2uvk_A          287 TDIHLWHNGKWDKSGELSQ--GRAYGVSLP--WNNSLLIIGGETAGGKAVTDSVLITVKDNKVT  346 (357)
T ss_dssp             CEEEECC---CEEEEECSS--CCBSSEEEE--ETTEEEEEEEECGGGCEEEEEEEEEC-CCSCE
T ss_pred             EEEEecCCCceeeCCCCCC--CcccceeEE--eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeE
Confidence            77899876543  323322  111112222  3677888888653      4667788887754

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=93.02  E-value=4.1  Score=35.31  Aligned_cols=188  Identities=9%  Similarity=0.005  Sum_probs=89.9

Q ss_pred             CCCEEEEEe-C-----CcEEEEEccCCc---eeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCC
Q 014977           55 DYGCFAAGT-S-----CGFRIYNCEPFK---ETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR  125 (415)
Q Consensus        55 ~g~~la~g~-d-----~~v~iw~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~  125 (415)
                      ++.+++.|+ +     +.+.+||..+..   -.....+........ +... ++.+++.++.+.......+.+||+.+.+
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~-~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~  139 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAG-ATTL-GDMIYVSGGFDGSRRHTSMERYDPNIDQ  139 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCE-EEEE-TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCcccee-EEEE-CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence            567777776 4     357888887654   322222222211111 2222 3444454443322123579999988876


Q ss_pred             EEEEEE--ccCceeEEEEcCCeEEEE--e-----CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCcc
Q 014977          126 CIGEFA--FRSDVRSVKLSRDRIVVV--L-----EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQR  196 (415)
Q Consensus       126 ~~~~~~--~~~~i~~l~~~~~~~~~~--~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~d  196 (415)
                      ....-.  ....-.++....+..+++  .     -..+.+||+.+.+-...-..............  ++.++++ |+.+
T Consensus       140 W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~-GG~~  216 (301)
T 2vpj_A          140 WSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVV-GGFD  216 (301)
T ss_dssp             EEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEE-CCBC
T ss_pred             EEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEE-eCCC
Confidence            544332  121222333333444444  1     35688999877654332111111111122222  3445555 4443


Q ss_pred             -----CeEEEEEcCCcceEEEecC---ccceEEEEeCCCCCEEEEEeCCC-----cEEEEEECCCCc
Q 014977          197 -----GQVRIEHFGLNMIKLINAH---DSHIACFTLTLDGLLLATASTRG-----TLIRIFNTVDGT  250 (415)
Q Consensus       197 -----g~v~i~~~~~~~~~~~~~~---~~~i~~l~~sp~g~~l~s~s~dg-----~~I~vwd~~~~~  250 (415)
                           ..+.+++.....-..+...   ......+.+  ++++++.|+.++     . |.+||+.+.+
T Consensus       217 ~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~-v~~yd~~~~~  280 (301)
T 2vpj_A          217 GTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSS-IECYDPIIDS  280 (301)
T ss_dssp             SSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEE-EEEEETTTTE
T ss_pred             CCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCccccc-EEEEcCCCCe
Confidence                 3466666655443333211   111122222  667777777653     4 7888887664

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=92.21  E-value=5.6  Score=34.88  Aligned_cols=124  Identities=7%  Similarity=-0.063  Sum_probs=70.0

Q ss_pred             CeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeC---CccCeEEEEEcCCcceEEEecCccceEEEEeCCCC
Q 014977          152 HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG---LQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDG  228 (415)
Q Consensus       152 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g---~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g  228 (415)
                      ..|+..++...+.. .+...    ....+++.  +..|+++.   ..+..|+.-+.++.....+..+..    .+++++|
T Consensus        88 ~~Iy~i~~dg~~~~-~l~~~----~~~~~s~~--g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g  156 (302)
T 3s25_A           88 NSLCRIKRNGHGST-VLDPD----PCIYASLI--GNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNTSD  156 (302)
T ss_dssp             EEEEEEETTSCCCE-EEECS----CEEEEEEE--TTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEEET
T ss_pred             CeEEEEeCCCCcce-EeecC----CccEEEEe--CCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeEEC
Confidence            46777777655432 22211    12345554  44565543   234455556666766666665543    4567888


Q ss_pred             CEEEEEeC-CCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCC--eEEEEEceec
Q 014977          229 LLLATAST-RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKG--TVHIFSLRVR  293 (415)
Q Consensus       229 ~~l~s~s~-dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg--~i~vwd~~~~  293 (415)
                      +.|+-.+. ... |.+-++..+.....+.+     ... ..++|++.+|+-....+  .|..-+++..
T Consensus       157 ~~iy~t~~g~~~-Iy~~~l~g~~~~~l~~~-----~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~  217 (302)
T 3s25_A          157 RYFYYNNPKNGQ-LYRYDTASQSEALFYDC-----NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNP  217 (302)
T ss_dssp             TEEEEECTTTCC-EEEEETTTTEEEEEECS-----CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSC
T ss_pred             CEEEEEeCCCce-EEEEECCCCCEEEEeCC-----Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCC
Confidence            88886665 556 88888866554433332     122 23559999988765443  4555455443

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=91.35  E-value=6.7  Score=34.04  Aligned_cols=188  Identities=13%  Similarity=0.066  Sum_probs=88.9

Q ss_pred             CCCEEEEEe-C----CcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCC-CCCCCCeEEEEECCCCCEEE
Q 014977           55 DYGCFAAGT-S----CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDN-SQYPPTKVIIWDDHQSRCIG  128 (415)
Q Consensus        55 ~g~~la~g~-d----~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-~~~~~~~i~vwd~~~~~~~~  128 (415)
                      ++.+++.|+ +    ..+.+||..+..-.....+.......... ... +.+++.|+.+ .......+.+||+.+.+...
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~-~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~  132 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAAC-AAE-GKIYTSGGSEVGNSALYLFECYDTRTESWHT  132 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEE-EET-TEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEE-EEC-CEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence            667777776 4    55778888765433332332222221222 223 4444444432 12233679999988876443


Q ss_pred             EEE--ccCceeEEEEcCCeEEEE--e---------CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCc
Q 014977          129 EFA--FRSDVRSVKLSRDRIVVV--L---------EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ  195 (415)
Q Consensus       129 ~~~--~~~~i~~l~~~~~~~~~~--~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  195 (415)
                      .-.  ....-.++....+..+++  .         -..+.+||+.+.+-...-..............  ++.++++ |+.
T Consensus       133 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~-GG~  209 (306)
T 3ii7_A          133 KPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAV-GGQ  209 (306)
T ss_dssp             ECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEE-CCE
T ss_pred             CCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEE-eCC
Confidence            322  111222333334444444  1         35588999877643322111111111122222  3445555 444


Q ss_pred             cC-----eEEEEEcCCcceEEEe---cCccceEEEEeCCCCCEEEEEeCC-----CcEEEEEECCCCc
Q 014977          196 RG-----QVRIEHFGLNMIKLIN---AHDSHIACFTLTLDGLLLATASTR-----GTLIRIFNTVDGT  250 (415)
Q Consensus       196 dg-----~v~i~~~~~~~~~~~~---~~~~~i~~l~~sp~g~~l~s~s~d-----g~~I~vwd~~~~~  250 (415)
                      ++     .+.+++.....-..+.   ........+.+  ++++++.|+.+     .. +.+||+.+.+
T Consensus       210 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~-~~~yd~~~~~  274 (306)
T 3ii7_A          210 NGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGH-ILEYNTETDK  274 (306)
T ss_dssp             ETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCE-EEEEETTTTE
T ss_pred             CCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeee-EEEEcCCCCe
Confidence            32     3455555443322221   11122223333  66777777754     45 8888987764

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=91.32  E-value=7.8  Score=34.73  Aligned_cols=68  Identities=15%  Similarity=0.044  Sum_probs=44.4

Q ss_pred             eEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE-------ccCceeEEEEcCC----eEEEE-----eCC
Q 014977           89 RIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-------FRSDVRSVKLSRD----RIVVV-----LEH  152 (415)
Q Consensus        89 ~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-------~~~~i~~l~~~~~----~~~~~-----~d~  152 (415)
                      ....+.|.+++.++++....     |.|++++..+++......       .......|+++|+    +.+.+     .++
T Consensus        33 ~P~~ia~~pdG~llVter~~-----G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~  107 (347)
T 3das_A           33 SPWGLAPLPGGDLLVSSRDE-----ATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDN  107 (347)
T ss_dssp             SEEEEEECTTSCEEEEETTT-----CEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSE
T ss_pred             CceEEEEcCCCcEEEEEecC-----CEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCC
Confidence            45678889999888886644     899999866665422211       2456789999985    44433     245


Q ss_pred             eEEEEEcCC
Q 014977          153 KIYVYSFVD  161 (415)
Q Consensus       153 ~i~iwd~~~  161 (415)
                      .|.-|.+..
T Consensus       108 ~v~R~~~~~  116 (347)
T 3das_A          108 RIVRMLYDE  116 (347)
T ss_dssp             EEEEEEBCT
T ss_pred             EEEEEEeCC
Confidence            666666644

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=90.88  E-value=7.7  Score=33.88  Aligned_cols=227  Identities=14%  Similarity=0.092  Sum_probs=101.2

Q ss_pred             EEEEeCCcEEEEEccCCceeEEEeccCC-CeeEEEEeeeCCeEEEEecC-----CCCCCCCCeEEEEECCCCCEEEEEEc
Q 014977           59 FAAGTSCGFRIYNCEPFKETFRRDLKSG-GFRIVEMLFRCNILALVGAG-----DNSQYPPTKVIIWDDHQSRCIGEFAF  132 (415)
Q Consensus        59 la~g~d~~v~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~s~~-----~d~~~~~~~i~vwd~~~~~~~~~~~~  132 (415)
                      ++.|+ ..+.+||..+.+-.. ..+... .....++....+..++++|.     .........+.+||..+++....-..
T Consensus         8 ~~~GG-~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~   85 (315)
T 4asc_A            8 FMISE-EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPL   85 (315)
T ss_dssp             EEEET-TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCB
T ss_pred             EEEcC-CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCC
Confidence            33444 678889988755432 223111 22223333344455555552     11000112478889887764322111


Q ss_pred             c--CceeEEEEcCCeEEEE--e--------CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCc-c---
Q 014977          133 R--SDVRSVKLSRDRIVVV--L--------EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ-R---  196 (415)
Q Consensus       133 ~--~~i~~l~~~~~~~~~~--~--------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-d---  196 (415)
                      .  ..-.+++...+..+++  .        -..+.+||..+.+-...-..........+...  ++.++++ |+. +   
T Consensus        86 p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~-GG~~~~~~  162 (315)
T 4asc_A           86 PSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSH--MDLVYVI-GGKGSDRK  162 (315)
T ss_dssp             SSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEE-CCBCTTSC
T ss_pred             CcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEE--CCEEEEE-eCCCCCCc
Confidence            1  1112233333444444  1        14588899877643221111111112222222  3345555 433 2   


Q ss_pred             --CeEEEEEcCCcceEEEec---CccceEEEEeCCCCCEEEEEeCCCc----EEEEEECCCCcEEEEEecCCCcccEEEE
Q 014977          197 --GQVRIEHFGLNMIKLINA---HDSHIACFTLTLDGLLLATASTRGT----LIRIFNTVDGTRLQEVRRGVDRAEIYSI  267 (415)
Q Consensus       197 --g~v~i~~~~~~~~~~~~~---~~~~i~~l~~sp~g~~l~s~s~dg~----~I~vwd~~~~~~~~~~~~~~~~~~v~~l  267 (415)
                        ..+.+++.....-..+..   .......+.+  ++++++.|+.++.    .+.+||+.+.+-...-...........+
T Consensus       163 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~  240 (315)
T 4asc_A          163 CLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLV  240 (315)
T ss_dssp             BCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred             ccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEE
Confidence              245555554432222211   1111122222  6677777776541    2888998776543221111011112222


Q ss_pred             EeCCCCCEEEEEeCCC--------------eEEEEEceecc
Q 014977          268 ALSPNVQWLAVASDKG--------------TVHIFSLRVRV  294 (415)
Q Consensus       268 ~~spdg~~l~s~s~dg--------------~i~vwd~~~~~  294 (415)
                      .+  ++++++.|+.++              .+.+||+++++
T Consensus       241 ~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~  279 (315)
T 4asc_A          241 SL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK  279 (315)
T ss_dssp             EE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred             EE--CCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence            23  567777776532              36778877654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=90.73  E-value=0.82  Score=40.97  Aligned_cols=112  Identities=13%  Similarity=0.118  Sum_probs=63.3

Q ss_pred             eEEEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEe-c--CCCceEEEEeCCccCeEEEEEcCCc-ceEEEec----
Q 014977          145 RIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLS-H--HSSTSVLACPGLQRGQVRIEHFGLN-MIKLINA----  214 (415)
Q Consensus       145 ~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~l~~~g~~dg~v~i~~~~~~-~~~~~~~----  214 (415)
                      +.+++  .||.|+-+|..+|+.+..++.... ...+... +  ..++..++.....||.+..++.... ....+..    
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~-~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv   89 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENF-QPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV   89 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGS-CCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCcc-CCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence            44444  699999999999999988866410 0111111 0  0122333332246888877654332 2222211    


Q ss_pred             CccceEE---EEe-C----CCCCEEEEEeCCCcEEEEEECCCCcEEEEEecC
Q 014977          215 HDSHIAC---FTL-T----LDGLLLATASTRGTLIRIFNTVDGTRLQEVRRG  258 (415)
Q Consensus       215 ~~~~i~~---l~~-s----p~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~  258 (415)
                      ...++..   ... .    ..+..+++|+.+|. +...|+.+|+.+.++...
T Consensus        90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~-l~ald~~tG~~~W~~~~~  140 (339)
T 2be1_A           90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTI-MYTINMLNGEIISAFGPG  140 (339)
T ss_dssp             TTCSEEEECC----------CCEEEEECEEEEE-EEEEETTTCCEEEEESTT
T ss_pred             eccccccCCCceeecccccccCCEEEEEecCCE-EEEEECCCCcEEEEEecC
Confidence            1112211   001 0    13457889999999 999999999999998753

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=90.53  E-value=13  Score=35.72  Aligned_cols=97  Identities=10%  Similarity=0.018  Sum_probs=62.3

Q ss_pred             EEecCCCceEEEEeCCccCeEEEEEcCC-------cc-------eEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEE
Q 014977          179 CLSHHSSTSVLACPGLQRGQVRIEHFGL-------NM-------IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIF  244 (415)
Q Consensus       179 ~~~~~~~~~~l~~~g~~dg~v~i~~~~~-------~~-------~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vw  244 (415)
                      .+..+|+|++++++|-.+.++.+.+...       +.       ..... -.-.....+|.++|....+---|.. |.-|
T Consensus       327 Gv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSq-vvkW  404 (638)
T 3sbq_A          327 GCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQ-VVKW  404 (638)
T ss_dssp             CEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTE-EEEE
T ss_pred             ceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecce-EEEE
Confidence            3445677889999898999999977653       10       11112 2334567889999965566668888 9999


Q ss_pred             ECCCC----------cEEEEEecCCCcccEEEEEe------CCCCCEEEEEe
Q 014977          245 NTVDG----------TRLQEVRRGVDRAEIYSIAL------SPNVQWLAVAS  280 (415)
Q Consensus       245 d~~~~----------~~~~~~~~~~~~~~v~~l~~------spdg~~l~s~s  280 (415)
                      ++...          ..+.++..+  - .+-.+.-      .+||++|++..
T Consensus       405 ni~~a~~~~~g~~~~~v~~k~dv~--Y-qpGH~~~~~get~~~dGk~lv~ln  453 (638)
T 3sbq_A          405 NMEEAVRAYKGEKVNYIKQKLDVH--Y-QPGHLHASLCETNEADGKWLVALS  453 (638)
T ss_dssp             EHHHHHHHHTTCCCCCEEEEEECS--S-CEEEEEETTTTSTTCCSCEEEEEE
T ss_pred             eccHHHHHhcCccCCeeeeccccc--c-CCcccccCCCccCCCCccEEEEec
Confidence            98653          455666653  2 1223322      46788877764

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=89.76  E-value=9.5  Score=33.17  Aligned_cols=189  Identities=10%  Similarity=-0.015  Sum_probs=84.8

Q ss_pred             CCCEEEEEe-C---------CcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCC
Q 014977           55 DYGCFAAGT-S---------CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQS  124 (415)
Q Consensus        55 ~g~~la~g~-d---------~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~  124 (415)
                      ++.+++.|+ +         +.+.+||..+..-.....+........ +... ++.+++.|+.+.......+.+||+.+.
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~-~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~  147 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG-VGVI-DGHIYAVGGSHGCIHHNSVERYEPERD  147 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCE-EEEE-TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccE-EEEE-CCEEEEEcCCCCCcccccEEEECCCCC
Confidence            566666655 2         457778877644222222211111111 1222 344444444321111257889998877


Q ss_pred             CEEEEEE--ccCceeEEEEcCCeEEEE--e-----CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCc
Q 014977          125 RCIGEFA--FRSDVRSVKLSRDRIVVV--L-----EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ  195 (415)
Q Consensus       125 ~~~~~~~--~~~~i~~l~~~~~~~~~~--~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  195 (415)
                      +....-.  ....-.++....+..+++  .     -..+.+||+.+.+-...-..........+...  ++.++++ |+.
T Consensus       148 ~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~-GG~  224 (308)
T 1zgk_A          148 EWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAA-GGY  224 (308)
T ss_dssp             EEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEE-CCB
T ss_pred             eEeECCCCCccccceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEE-eCC
Confidence            5433222  111122333334444444  1     25688999877643322111111111122222  3455555 443


Q ss_pred             c-----CeEEEEEcCCcceEEEec---CccceEEEEeCCCCCEEEEEeCC-----CcEEEEEECCCCcE
Q 014977          196 R-----GQVRIEHFGLNMIKLINA---HDSHIACFTLTLDGLLLATASTR-----GTLIRIFNTVDGTR  251 (415)
Q Consensus       196 d-----g~v~i~~~~~~~~~~~~~---~~~~i~~l~~sp~g~~l~s~s~d-----g~~I~vwd~~~~~~  251 (415)
                      +     ..+.+++.....-..+..   .......+.+  ++++++.|+.+     .. +.+||+.+.+-
T Consensus       225 ~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~-v~~yd~~~~~W  290 (308)
T 1zgk_A          225 DGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH--QGRIYVLGGYDGHTFLDS-VECYDPDTDTW  290 (308)
T ss_dssp             CSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCE-EEEEETTTTEE
T ss_pred             CCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE--CCEEEEEcCcCCCcccce-EEEEcCCCCEE
Confidence            3     345666655433222221   1111122222  56677777654     34 77888876543

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=86.81  E-value=14  Score=31.77  Aligned_cols=188  Identities=14%  Similarity=0.106  Sum_probs=86.8

Q ss_pred             CCCEEEEEe-C-----CcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEE
Q 014977           55 DYGCFAAGT-S-----CGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIG  128 (415)
Q Consensus        55 ~g~~la~g~-d-----~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~  128 (415)
                      ++.+++.|+ +     ..+.+||..+..-.....+....... .+....+..++++|... ......+.+||+.+.+...
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~~~~iyv~GG~~~-~~~~~~~~~~d~~~~~W~~  138 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTL-GAAVLNGLLYAVGGFDG-STGLSSVEAYNIKSNEWFH  138 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEEETTEEEEEEEECS-SCEEEEEEEEETTTTEEEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccce-EEEEECCEEEEEcCCCC-CccCceEEEEeCCCCeEee
Confidence            667777776 3     34778887765433322222211111 12222344444444321 1111468889988776443


Q ss_pred             EEE--ccCceeEEEEcCCeEEEE--e-------CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccC
Q 014977          129 EFA--FRSDVRSVKLSRDRIVVV--L-------EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRG  197 (415)
Q Consensus       129 ~~~--~~~~i~~l~~~~~~~~~~--~-------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg  197 (415)
                      .-.  ....-.++....+..+++  .       -..+.+||+.+.+-...-..............  ++.++++ |+.++
T Consensus       139 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~-GG~~~  215 (302)
T 2xn4_A          139 VAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAV-GGHDG  215 (302)
T ss_dssp             ECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEE-CCBSS
T ss_pred             cCCCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEE-CCCCC
Confidence            322  112222333334444444  1       24588999877654332111111111122222  3455555 44432


Q ss_pred             -----eEEEEEcCCcceEEEecCc---cceEEEEeCCCCCEEEEEeCCC-----cEEEEEECCCCc
Q 014977          198 -----QVRIEHFGLNMIKLINAHD---SHIACFTLTLDGLLLATASTRG-----TLIRIFNTVDGT  250 (415)
Q Consensus       198 -----~v~i~~~~~~~~~~~~~~~---~~i~~l~~sp~g~~l~s~s~dg-----~~I~vwd~~~~~  250 (415)
                           .+.+++.....-..+....   .....+.+  ++++++.|+.++     . +.+||+.+.+
T Consensus       216 ~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~-v~~yd~~~~~  278 (302)
T 2xn4_A          216 PLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV--NGLLYVVGGDDGSCNLAS-VEYYNPTTDK  278 (302)
T ss_dssp             SSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCC-EEEEETTTTE
T ss_pred             CcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE--CCEEEEECCcCCCccccc-EEEEcCCCCe
Confidence                 4556665554333332211   11112222  667777776543     4 7888887664

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=86.77  E-value=26  Score=34.70  Aligned_cols=197  Identities=12%  Similarity=-0.003  Sum_probs=91.9

Q ss_pred             CCCCEEEEEe-C----CcEEEEEccCCceeEEE-e-----ccCCCeeEEEEeeeCCeEEEEecCCCCCC-CCCeEEEEEC
Q 014977           54 QDYGCFAAGT-S----CGFRIYNCEPFKETFRR-D-----LKSGGFRIVEMLFRCNILALVGAGDNSQY-PPTKVIIWDD  121 (415)
Q Consensus        54 p~g~~la~g~-d----~~v~iw~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~l~s~~~d~~~-~~~~i~vwd~  121 (415)
                      -++.+++.|+ +    +.+.+||..+..-.... .     +..............++.+++.||.+... .-+.+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            5677777776 3    34778888765433222 1     11111222222232144444444433111 2256899998


Q ss_pred             CCCCEEEEEE--ccCceeEEEEcCCeEEEEe-----CCeEEEEEcCCceeeeEEe---ccCCCcceEEEecCCC-ceEEE
Q 014977          122 HQSRCIGEFA--FRSDVRSVKLSRDRIVVVL-----EHKIYVYSFVDLKLLHQIE---TLANLRGLCCLSHHSS-TSVLA  190 (415)
Q Consensus       122 ~~~~~~~~~~--~~~~i~~l~~~~~~~~~~~-----d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~l~  190 (415)
                      .+.+....-.  ....-.+++...++.+++.     ++.+.+||..+.+-...-.   .........++..+.+ +.+++
T Consensus       476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv  555 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII  555 (695)
T ss_dssp             TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred             CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence            8865433221  1222223344234544442     2279999988765332211   1111111222332323 45666


Q ss_pred             EeCCc--c-----CeEEEEEcCCcc------eEEEecC--cc-ceEEEEeCCCCCEEEEEeC--------CCcEEEEEEC
Q 014977          191 CPGLQ--R-----GQVRIEHFGLNM------IKLINAH--DS-HIACFTLTLDGLLLATAST--------RGTLIRIFNT  246 (415)
Q Consensus       191 ~~g~~--d-----g~v~i~~~~~~~------~~~~~~~--~~-~i~~l~~sp~g~~l~s~s~--------dg~~I~vwd~  246 (415)
                      + |+.  +     ..+.+++.....      -..+...  .. .-.+++...++++++.|+.        ... |.+||+
T Consensus       556 ~-GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~-v~~yd~  633 (695)
T 2zwa_A          556 L-GGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNS-IISLDP  633 (695)
T ss_dssp             E-CCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTS-EEEEET
T ss_pred             E-CCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCe-EEEEEC
Confidence            5 433  2     346666655443      2222221  11 1112233333777777774        345 899999


Q ss_pred             CCCcEE
Q 014977          247 VDGTRL  252 (415)
Q Consensus       247 ~~~~~~  252 (415)
                      .+.+-.
T Consensus       634 ~t~~W~  639 (695)
T 2zwa_A          634 LSETLT  639 (695)
T ss_dssp             TTTEEE
T ss_pred             CCCeEE
Confidence            877644

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=85.58  E-value=21  Score=32.40  Aligned_cols=164  Identities=8%  Similarity=0.085  Sum_probs=87.6

Q ss_pred             CeEEEEECCCC--CEEEEEEc-------cCceeEEEEc---CC----eEEE-E---eCCeEEEEEcCCceeeeEEeccCC
Q 014977          114 TKVIIWDDHQS--RCIGEFAF-------RSDVRSVKLS---RD----RIVV-V---LEHKIYVYSFVDLKLLHQIETLAN  173 (415)
Q Consensus       114 ~~i~vwd~~~~--~~~~~~~~-------~~~i~~l~~~---~~----~~~~-~---~d~~i~iwd~~~~~~~~~~~~~~~  173 (415)
                      -+|.+||+.++  +.++.+..       ...+.++.+.   ++    +.++ +   ....|.|+|+.+++.-+.+.....
T Consensus       123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~  202 (381)
T 3q6k_A          123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFK  202 (381)
T ss_dssp             CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGS
T ss_pred             ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCc
Confidence            58999999999  99999874       3457788887   22    2222 2   467899999988776554421111


Q ss_pred             C----------------cceEEEecCCC----ceEEEEeCCccCeE-EEE--EcC-C---cceEEEecCc---cceEEEE
Q 014977          174 L----------------RGLCCLSHHSS----TSVLACPGLQRGQV-RIE--HFG-L---NMIKLINAHD---SHIACFT  223 (415)
Q Consensus       174 ~----------------~~~~~~~~~~~----~~~l~~~g~~dg~v-~i~--~~~-~---~~~~~~~~~~---~~i~~l~  223 (415)
                      +                ..+..++.+++    ++.|.+..-....+ .|-  .++ .   ..++.+ +..   ..-..++
T Consensus       203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~~~~~  281 (381)
T 3q6k_A          203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELL-GNRGKYNDAIALA  281 (381)
T ss_dssp             CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEE-EECCTTCCEEEEE
T ss_pred             cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEe-eecCCCCCcceEE
Confidence            1                12333333333    33444322222122 221  011 1   112222 222   2334566


Q ss_pred             eC-CCCCEEEEEeCCCcEEEEEECCC-C---cEEEEEecCCCcccEEEEEeCCCCCEEEEE
Q 014977          224 LT-LDGLLLATASTRGTLIRIFNTVD-G---TRLQEVRRGVDRAEIYSIALSPNVQWLAVA  279 (415)
Q Consensus       224 ~s-p~g~~l~s~s~dg~~I~vwd~~~-~---~~~~~~~~~~~~~~v~~l~~spdg~~l~s~  279 (415)
                      +. .+|.++++--.... |..|+..+ .   +....+.....-..+..+.+.++|.+.+..
T Consensus       282 ~D~~~G~ly~~~~~~~a-I~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s  341 (381)
T 3q6k_A          282 YDPKTKVIFFAEANTKQ-VSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS  341 (381)
T ss_dssp             ECTTTCEEEEEESSSSE-EEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred             EeCCCCeEEEEeccCCe-EEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence            75 67877777777778 99999865 1   122333321122356777777666544444

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=85.10  E-value=21  Score=31.94  Aligned_cols=49  Identities=12%  Similarity=0.117  Sum_probs=31.5

Q ss_pred             eEEEEeeeCCeE-EEEecCCCCCCCCCeEEEEECCCCCEEEEEE--------ccCceeEEEEcCC
Q 014977           89 RIVEMLFRCNIL-ALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA--------FRSDVRSVKLSRD  144 (415)
Q Consensus        89 ~~~~~~~~~~~~-~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~--------~~~~i~~l~~~~~  144 (415)
                      ....+.|.+++. ++++...      +.|++++. .++....+.        .......|+++|+
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~------G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pd   76 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRG------GELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPD   76 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETT------TEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTT
T ss_pred             CcEEEEEcCCCCEEEEEeCC------ceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCC
Confidence            356788999988 7776543      88999884 333211111        1345689999995

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=83.20  E-value=38  Score=33.53  Aligned_cols=177  Identities=7%  Similarity=-0.030  Sum_probs=85.9

Q ss_pred             CeEEEEECCCCCEEEEE-E-------ccCceeEEEEcC-CeEEE-E--e------CCeEEEEEcCCceeeeEEeccCCCc
Q 014977          114 TKVIIWDDHQSRCIGEF-A-------FRSDVRSVKLSR-DRIVV-V--L------EHKIYVYSFVDLKLLHQIETLANLR  175 (415)
Q Consensus       114 ~~i~vwd~~~~~~~~~~-~-------~~~~i~~l~~~~-~~~~~-~--~------d~~i~iwd~~~~~~~~~~~~~~~~~  175 (415)
                      +.+.+||..+++....- .       ....-.+++... ++.++ +  .      -+.+.+||..+.+-...-.... +.
T Consensus       412 ~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~-~R  490 (695)
T 2zwa_A          412 NEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSH-TR  490 (695)
T ss_dssp             CCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSB-CC
T ss_pred             CcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCC-Cc
Confidence            57889998887654433 1       111123344442 44444 3  1      1358889987754332211111 11


Q ss_pred             ceEEEecCCCceEEEEeCCccC--eEEEEEcCCcceEEEec------CccceEEEEeCCC-CCEEEEEeC--C-----Cc
Q 014977          176 GLCCLSHHSSTSVLACPGLQRG--QVRIEHFGLNMIKLINA------HDSHIACFTLTLD-GLLLATAST--R-----GT  239 (415)
Q Consensus       176 ~~~~~~~~~~~~~l~~~g~~dg--~v~i~~~~~~~~~~~~~------~~~~i~~l~~sp~-g~~l~s~s~--d-----g~  239 (415)
                      ...+...-.++.++++ |+.++  .+.+++.....-..+..      ......++.+..+ +++++.|+.  +     ..
T Consensus       491 ~~h~~~~~~~~~iyv~-GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~  569 (695)
T 2zwa_A          491 FRHSACSLPDGNVLIL-GGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDK  569 (695)
T ss_dssp             BSCEEEECTTSCEEEE-CCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCE
T ss_pred             ccceEEEEcCCEEEEE-CCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCc
Confidence            1122222114556666 44333  46666665543332221      1122233555555 667777765  2     34


Q ss_pred             EEEEEECCCCcE-----EEEEecC--CCcccEEEEEeCCCCCEEEEEeC--------CCeEEEEEceecc
Q 014977          240 LIRIFNTVDGTR-----LQEVRRG--VDRAEIYSIALSPNVQWLAVASD--------KGTVHIFSLRVRV  294 (415)
Q Consensus       240 ~I~vwd~~~~~~-----~~~~~~~--~~~~~v~~l~~spdg~~l~s~s~--------dg~i~vwd~~~~~  294 (415)
                       +.+||+.+.+.     -..+...  ........+.+ .++++++.|+.        ...|.+||+.+++
T Consensus       570 -v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~  637 (695)
T 2zwa_A          570 -AIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYI-TPRKLLIVGGTSPSGLFDRTNSIISLDPLSET  637 (695)
T ss_dssp             -EEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEE-ETTEEEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred             -EEEEEccCCccccceEEEEcCCCCCCCcccceEEEe-CCCEEEEECCccCCCCCCCCCeEEEEECCCCe
Confidence             88999987761     1222210  01111222222 33677777764        2458888887764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	415
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.002
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	8e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	8e-05
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	0.002
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.002

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (124), Expect = 3e-08
 Identities = 22/242 (9%), Positives = 62/242 (25%), Gaps = 8/242 (3%)

Query: 49  SVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDN 108
           S     D      G                  +   +        L       +  +  +
Sbjct: 102 SCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS 161

Query: 109 SQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQI 168
                   +       +  G     S +             L++ +  +   + + L Q 
Sbjct: 162 DGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH 221

Query: 169 ETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDG 228
           +  + +  L        T      G++   V + H        ++ H+S +        G
Sbjct: 222 DFTSQIFSLGY----CPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCG 277

Query: 229 LLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIF 288
               +       +  + T  G  + + +     + + S  +S + +++   S      ++
Sbjct: 278 KWFVSTGKDNL-LNAWRTPYGASIFQSKES---SSVLSCDISVDDKYIVTGSGDKKATVY 333

Query: 289 SL 290
            +
Sbjct: 334 EV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 17/104 (16%), Positives = 33/104 (31%), Gaps = 14/104 (13%)

Query: 188 VLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTV 247
            L  PG+ R   +I             H   +   T++     + T       +++++  
Sbjct: 32  ALIGPGIPRHARQINTLN---------HGEVVCAVTISNPTRHVYTGGKGC--VKVWDIS 80

Query: 248 DGTRLQEVRRGVDRA---EIYSIALSPNVQWLAVASDKGTVHIF 288
                  V +         I S  L P+   L V  +  T+ I+
Sbjct: 81  HPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW 124

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.4 bits (116), Expect = 3e-07
 Identities = 15/153 (9%), Positives = 45/153 (29%), Gaps = 3/153 (1%)

Query: 136 VRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ 195
           VR   ++       L    +V   +         +++   G            L      
Sbjct: 167 VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD 226

Query: 196 RGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEV 255
           +     +      +  +  HD+ +        G  + + +   T +R+++  +   ++ +
Sbjct: 227 KTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT-LRVWDYKNKRCMKTL 285

Query: 256 RRGVDRAEIYSIALSPNVQWLAVASDKGTVHIF 288
                   + S+       ++   S   TV ++
Sbjct: 286 NAHEHF--VTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.3 bits (116), Expect = 4e-07
 Identities = 13/141 (9%), Positives = 42/141 (29%), Gaps = 9/141 (6%)

Query: 152 HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKL 211
               ++   +           +   +  +    + +  A  G      R+     +   +
Sbjct: 206 ASAKLWDVREGMCRQTFT--GHESDINAICFFPNGNAFAT-GSDDATCRLFDLRADQELM 262

Query: 212 INAHDSH---IACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIA 268
             +HD+    I   + +  G LL           +++ +   R   +        +  + 
Sbjct: 263 TYSHDNIICGITSVSFSKSGRLLLAGYDDFN-CNVWDALKADRAGVLAG--HDNRVSCLG 319

Query: 269 LSPNVQWLAVASDKGTVHIFS 289
           ++ +   +A  S    + I++
Sbjct: 320 VTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.3 bits (108), Expect = 3e-06
 Identities = 33/244 (13%), Positives = 69/244 (28%), Gaps = 4/244 (1%)

Query: 49  SVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDN 108
           ++ W  D     + +  G ++   + +       +      ++   +  +    V  G  
Sbjct: 60  AMHWGTDSRLLVSASQDG-KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG-NYVACGGL 117

Query: 109 SQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQI 168
                   +   +   R   E A  +   S     D   +V        +  D++   Q 
Sbjct: 118 DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQT 177

Query: 169 ETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLD 227
            T     G       +  + L   G      ++         +    H+S I       +
Sbjct: 178 TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPN 237

Query: 228 GLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHI 287
           G   AT S   T  R+F+      L           I S++ S + + L    D    ++
Sbjct: 238 GNAFATGSDDAT-CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV 296

Query: 288 FSLR 291
           +   
Sbjct: 297 WDAL 300

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.2 bits (105), Expect = 8e-06
 Identities = 7/71 (9%), Positives = 22/71 (30%), Gaps = 1/71 (1%)

Query: 219 IACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAV 278
           I+C     D   +A        + I+       +Q         ++  +  +P+   +  
Sbjct: 10  ISCHAWNKDRTQIAICPNNHE-VHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68

Query: 279 ASDKGTVHIFS 289
                  ++++
Sbjct: 69  CGTDRNAYVWT 79

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 3e-05
 Identities = 36/249 (14%), Positives = 72/249 (28%), Gaps = 24/249 (9%)

Query: 49  SVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDN 108
           +V     +       S    +   +         L      +  + +    +        
Sbjct: 99  TVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVV------- 151

Query: 109 SQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLH 166
           S      V +WD     C+      ++           VV   L+  I V+       +H
Sbjct: 152 SGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIH 211

Query: 167 QIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI----EHFGLNMIKLINAHDSHIACF 222
            +    +             ++L   G     V+I        L  ++  N H S + C 
Sbjct: 212 TLTGHQS----LTSGMELKDNILVS-GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCL 266

Query: 223 TLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR---GVDRAEIYSIALSPNVQWLAVA 279
               +   + T+S  GT +++++   G  ++ +     G     ++ I  S      AV 
Sbjct: 267 QFNKN--FVITSSDDGT-VKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVG 323

Query: 280 SDKGTVHIF 288
           S  GT    
Sbjct: 324 SRNGTEETK 332

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.5 bits (98), Expect = 6e-05
 Identities = 13/121 (10%), Positives = 29/121 (23%), Gaps = 5/121 (4%)

Query: 175 RGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATA 234
           + +   S   S  +                          H   +     T +   + + 
Sbjct: 267 QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSG 326

Query: 235 STRGTLIRIFNTVDGTRLQEVRRGVDR----AEIYSIALSPNVQWLAVASDKGTVHIFSL 290
           S     +  ++   G  L  ++   +     A     +L P     A  S      I+  
Sbjct: 327 SKDRG-VLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

Query: 291 R 291
           +
Sbjct: 386 K 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.3 bits (95), Expect = 2e-04
 Identities = 36/273 (13%), Positives = 78/273 (28%), Gaps = 31/273 (11%)

Query: 49  SVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-------NILA 101
            V ++ D    A G +   ++Y         R    S   +  E L           I +
Sbjct: 67  CVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRS 126

Query: 102 LVGAGDNSQY-----PPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYV 156
           +  + D              I   +++   +       D+ S+        +V       
Sbjct: 127 VCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRT 186

Query: 157 YSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMI------- 209
               DL+      TL+   G+  ++           G     VR+       +       
Sbjct: 187 VRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSE 246

Query: 210 -KLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQ----------EVRRG 258
            +    H   +     T DG  + + S   + ++++N  +               EV   
Sbjct: 247 NESGTGHKDSVYSVVFTRDGQSVVSGSLDRS-VKLWNLQNANNKSDSKTPNSGTCEVTYI 305

Query: 259 VDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR 291
             +  + S+A + N +++   S    V  +  +
Sbjct: 306 GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK 338

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.1 bits (97), Expect = 8e-05
 Identities = 7/84 (8%), Positives = 27/84 (32%), Gaps = 2/84 (2%)

Query: 206 LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVD-RAEI 264
           + ++++  A   +I+   +     LL   S  G+ + ++      +  ++ + +  +  +
Sbjct: 1   MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGS-LTVYKFDIQAKNVDLLQSLRYKHPL 59

Query: 265 YSIALSPNVQWLAVASDKGTVHIF 288
                  N              + 
Sbjct: 60  LCCNFIDNTDLQIYVGTVQGEILK 83

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 38.0 bits (87), Expect = 0.002
 Identities = 10/67 (14%), Positives = 23/67 (34%), Gaps = 4/67 (5%)

Query: 222 FTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASD 281
             L L  L   T    G  I + +      ++ +  G     ++   +S + ++L V   
Sbjct: 26  NDLDLPNLFSVTLRDAGQ-IALVDGDSKKIVKVIDTG---YAVHISRMSASGRYLLVIGR 81

Query: 282 KGTVHIF 288
              + + 
Sbjct: 82  DARIDMI 88

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 24/155 (15%), Positives = 50/155 (32%), Gaps = 12/155 (7%)

Query: 141 LSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVR 200
           LS   +    +  +  +SF  +     I  +        L   S TS      L     R
Sbjct: 196 LSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKR 255

Query: 201 IEHFGLNM--IKLINAHDSH---IACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEV 255
                ++    ++I   +S     +             A  +G  +  ++     ++ EV
Sbjct: 256 SSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGV-LLKYDVKTR-KVTEV 313

Query: 256 RRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSL 290
           +  +       + LS + + + V  D G ++ F L
Sbjct: 314 KNNL-----TDLRLSADRKTVMVRKDDGKIYTFPL 343

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	415
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.98
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.97
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.97
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.96
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.96
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.95
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.95
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.95
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.93
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.91
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.91
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.91
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.9
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.89
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.89
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.88
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.87
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.87
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.85
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.84
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.84
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.79
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.74
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.74
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.73
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.73
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.73
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.65
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.63
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.55
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.46
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.45
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.36
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.33
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.24
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.24
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.17
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.09
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.09
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.07
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.04
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.04
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.99
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.97
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.92
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.92
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.92
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.85
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.84
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.84
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	98.74
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.73
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.71
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.67
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.56
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.52
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.45
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.99
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.76
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.76
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.75
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.73
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.7
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.59
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.48
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.33
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.24
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.21
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.15
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.13
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.95
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.73
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.65
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.65
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.58
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.35
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.22
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	94.59
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	94.55
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	94.35
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	92.23
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	90.3
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	89.43
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	84.57

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-36  Score=274.42  Aligned_cols=277  Identities=12%  Similarity=0.099  Sum_probs=226.7

Q ss_pred             CCCCceEEEEEeCCCCEEEEEeCCcEEEEEccCCc---eeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEE
Q 014977           42 VDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFK---ETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII  118 (415)
Q Consensus        42 ~h~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~v  118 (415)
                      +|...|.+++|+|+|++||+|+||.|+|||+....   .........|...|.+++|+|++.+|++++.|     +.|++
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~d-----g~i~i  123 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA-----STLSI  123 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS-----SEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecc-----ccccc
Confidence            79999999999999999999999999999997533   22333344678889999999999999999888     99999


Q ss_pred             EECCCCC--EEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEe
Q 014977          119 WDDHQSR--CIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP  192 (415)
Q Consensus       119 wd~~~~~--~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  192 (415)
                      ||+....  ....+. |...+..+.|+|++.+++   .++.|++|++.+++.......+...  +.++.+++++..+++ 
T Consensus       124 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~--v~~l~~s~~~~~~~~-  200 (337)
T d1gxra_         124 WDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG--ASCIDISNDGTKLWT-  200 (337)
T ss_dssp             EECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC--EEEEEECTTSSEEEE-
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccccc-
Confidence            9987554  444555 788999999999998887   5889999999999988888877774  445555566667766 


Q ss_pred             CCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCC
Q 014977          193 GLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPN  272 (415)
Q Consensus       193 g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spd  272 (415)
                      ++.|+.+++|+...........|...|.+++|+|++++|++++.|+. |++||+++++.... ..  |...|++++|+|+
T Consensus       201 ~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~-i~i~d~~~~~~~~~-~~--~~~~i~~v~~s~~  276 (337)
T d1gxra_         201 GGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSN-VEVLHVNKPDKYQL-HL--HESCVLSLKFAYC  276 (337)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSC-EEEEETTSSCEEEE-CC--CSSCEEEEEECTT
T ss_pred             ccccccccccccccceeecccccccceEEEEEcccccccceeccccc-cccccccccccccc-cc--cccccceEEECCC
Confidence            66899999998776554445568899999999999999999999999 99999998887643 33  7889999999999


Q ss_pred             CCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccce
Q 014977          273 VQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSF  352 (415)
Q Consensus       273 g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (415)
                      +++|++++.||.|++||+.+++...                                                       
T Consensus       277 g~~l~s~s~Dg~i~iwd~~~~~~~~-------------------------------------------------------  301 (337)
T d1gxra_         277 GKWFVSTGKDNLLNAWRTPYGASIF-------------------------------------------------------  301 (337)
T ss_dssp             SSEEEEEETTSEEEEEETTTCCEEE-------------------------------------------------------
T ss_pred             CCEEEEEeCCCeEEEEECCCCCEEE-------------------------------------------------------
Confidence            9999999999999999998876431                                                       


Q ss_pred             EEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEE
Q 014977          353 AQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSF  387 (415)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~  387 (415)
                       .+. ....+..++|+++ ..|++++.||.|++|++
T Consensus       302 -~~~-~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         302 -QSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             -EEE-CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             -Ecc-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence             111 1245566889998 56777888999999987

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=8.2e-36  Score=270.44  Aligned_cols=245  Identities=16%  Similarity=0.142  Sum_probs=205.1

Q ss_pred             CCCCceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEEC
Q 014977           42 VDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD  121 (415)
Q Consensus        42 ~h~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~  121 (415)
                      .+.+.+..++++|+|+.|+.+.++.+.+|++++......  +.+|...+.++.|+|++.++++++.|     +.|++||+
T Consensus        15 ~~r~~~~~~a~~~~g~~l~~~~~~~v~i~~~~~~~~~~~--~~~H~~~v~~~~~sp~g~~latg~~d-----g~i~iwd~   87 (311)
T d1nr0a1          15 TARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEI--YTEHSHQTTVAKTSPSGYYCASGDVH-----GNVRIWDT   87 (311)
T ss_dssp             CCTTCCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEE--ECCCSSCEEEEEECTTSSEEEEEETT-----SEEEEEES
T ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCEEEEEECCCCceeEE--EcCCCCCEEEEEEeCCCCeEeccccC-----ceEeeeee
Confidence            344556788999999999999988899999987655443  34788899999999999999999988     99999999


Q ss_pred             CCCCEE--EEEE-ccCceeEEEEcCCeEEEE--e---CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeC
Q 014977          122 HQSRCI--GEFA-FRSDVRSVKLSRDRIVVV--L---EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG  193 (415)
Q Consensus       122 ~~~~~~--~~~~-~~~~i~~l~~~~~~~~~~--~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  193 (415)
                      .+++..  ..+. |...|.+++|+|++.+++  .   +..+++|++++++....+..|...+..+  .++|++.+++++|
T Consensus        88 ~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v--~~~~~~~~~l~sg  165 (311)
T d1nr0a1          88 TQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSV--DFKPSRPFRIISG  165 (311)
T ss_dssp             SSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEE--EECSSSSCEEEEE
T ss_pred             eccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccc--cccccceeeeccc
Confidence            887654  3445 889999999999998877  2   4569999999999988888888755444  4555555544557


Q ss_pred             CccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecC-----CCcccEEEE
Q 014977          194 LQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRG-----VDRAEIYSI  267 (415)
Q Consensus       194 ~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~-----~~~~~v~~l  267 (415)
                      +.|+.|++|+.+. +....+..|...|.++.|+|++++|++++.|+. |++||+.+++.+..+...     .|.+.|+++
T Consensus       166 s~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~-v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~  244 (311)
T d1nr0a1         166 SDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGT-IVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGL  244 (311)
T ss_dssp             ETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTCCEEEECBCTTSSSCSSSSCEEEE
T ss_pred             ccccccccccccccccccccccccccccccccCcccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence            8999999998775 566777889999999999999999999999999 999999999888777532     256789999


Q ss_pred             EeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977          268 ALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       268 ~~spdg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                      +|+|++++|++|+.||+|+|||+++++..
T Consensus       245 ~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~  273 (311)
T d1nr0a1         245 TWSPDGTKIASASADKTIKIWNVATLKVE  273 (311)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             ccCCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence            99999999999999999999999988753

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.2e-34  Score=258.95  Aligned_cols=280  Identities=13%  Similarity=0.172  Sum_probs=239.3

Q ss_pred             ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (415)
Q Consensus        38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i  116 (415)
                      ....+|.+.|++++|+|++++|++|+ |+.|+|||+++.+....  +..|...+.++.+++++..++.+..+     +.+
T Consensus        11 ~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~--~~~h~~~V~~~~~~~~~~~~~~~~~~-----~~~   83 (317)
T d1vyhc1          11 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERT--LKGHTDSVQDISFDHSGKLLASCSAD-----MTI   83 (317)
T ss_dssp             CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEE--ECCCSSCEEEEEECTTSSEEEEEETT-----SCC
T ss_pred             EEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEE--EeCCCCcEEEEeeecccccccccccc-----ccc
Confidence            34689999999999999999999999 99999999998766554  44788889999999999999988887     999


Q ss_pred             EEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEe
Q 014977          117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP  192 (415)
Q Consensus       117 ~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  192 (415)
                      .+|+....+....+. +...+.++.+++++..++   .|+.+++||+++++.+..+..+..  .+.++.+++++.++++ 
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~-  160 (317)
T d1vyhc1          84 KLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE--WVRMVRPNQDGTLIAS-  160 (317)
T ss_dssp             CEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEECTTSSEEEE-
T ss_pred             ccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCC--cceeeecccCCCEEEE-
Confidence            999988888777666 789999999999988877   689999999999999999988776  4555666677778776 


Q ss_pred             CCccCeEEEEEcCC-cceEEEecCccceEEEEeCCC--------------------CCEEEEEeCCCcEEEEEECCCCcE
Q 014977          193 GLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLD--------------------GLLLATASTRGTLIRIFNTVDGTR  251 (415)
Q Consensus       193 g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~--------------------g~~l~s~s~dg~~I~vwd~~~~~~  251 (415)
                      ++.|+.|++|+... .....+..|...+.+++|+|+                    +.++++++.|+. |++||++++++
T Consensus       161 ~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-i~~~~~~~~~~  239 (317)
T d1vyhc1         161 CSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT-IKMWDVSTGMC  239 (317)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSE-EEEEETTTTEE
T ss_pred             EeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCE-EEEEECCCCcE
Confidence            66899999988654 566778889999999999875                    357899999999 99999999999


Q ss_pred             EEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCC
Q 014977          252 LQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANP  331 (415)
Q Consensus       252 ~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (415)
                      +..+.+  |...|.+++|+|++++|++++.||.|+|||+++++...                                  
T Consensus       240 ~~~~~~--~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----------------------------------  283 (317)
T d1vyhc1         240 LMTLVG--HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK----------------------------------  283 (317)
T ss_dssp             EEEEEC--CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCE----------------------------------
T ss_pred             EEEEeC--CCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEE----------------------------------
Confidence            999998  78899999999999999999999999999998876432                                  


Q ss_pred             CCcccccccccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEE
Q 014977          332 GSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCS  386 (415)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~  386 (415)
                                            .++...+.+..++|+++ +.|++++.||.|++|+
T Consensus       284 ----------------------~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         284 ----------------------TLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             ----------------------EEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             ----------------------EEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence                                  33333456777899998 6788888899999994

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.5e-34  Score=266.14  Aligned_cols=244  Identities=13%  Similarity=0.130  Sum_probs=195.0

Q ss_pred             CCCCceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEe----------------ccCCCeeEEEEeeeCCeEEEEec
Q 014977           42 VDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRD----------------LKSGGFRIVEMLFRCNILALVGA  105 (415)
Q Consensus        42 ~h~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~l~s~  105 (415)
                      +|.+.|++++|+|||++||+|+|+.|+||++.+.+......                ...+...|.+++|++++.+++++
T Consensus        60 ~H~~~V~~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~  139 (388)
T d1erja_          60 DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG  139 (388)
T ss_dssp             ECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceec
Confidence            69999999999999999999999999999998765543321                12456678999999999999999


Q ss_pred             CCCCCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEe
Q 014977          106 GDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLS  181 (415)
Q Consensus       106 ~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  181 (415)
                      +.|     +.|++||...++.+..+. |...|.++.+++++..++   .++.+++||..+.........+..  ......
T Consensus       140 ~~d-----g~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--~~~~~~  212 (388)
T d1erja_         140 AED-----RLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG--VTTVAV  212 (388)
T ss_dssp             ETT-----SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSC--EEEEEE
T ss_pred             ccc-----cccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccc--cccccc
Confidence            988     999999999999888887 899999999999987776   689999999998887776665554  222223


Q ss_pred             cCCCceEEEEeCCccCeEEEEEcCCc-ceEE-------EecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcE--
Q 014977          182 HHSSTSVLACPGLQRGQVRIEHFGLN-MIKL-------INAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTR--  251 (415)
Q Consensus       182 ~~~~~~~l~~~g~~dg~v~i~~~~~~-~~~~-------~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~--  251 (415)
                      ..+++.+|++ |+.|+.|++|+.... ....       ..+|...|.+++|+|++++|++++.|+. |++||+.+++.  
T Consensus       213 ~~~~~~~l~~-~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~-i~iwd~~~~~~~~  290 (388)
T d1erja_         213 SPGDGKYIAA-GSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS-VKLWNLQNANNKS  290 (388)
T ss_dssp             CSTTCCEEEE-EETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE-EEEEEC-------
T ss_pred             cCCCCCeEEE-EcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCc-EEEEeccCCcccc
Confidence            3345566665 678999999887643 2222       3468899999999999999999999999 99999976543  


Q ss_pred             ----------EEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977          252 ----------LQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       252 ----------~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                                ......  |...|.+++|+|++++|++|+.||.|++||+++++..
T Consensus       291 ~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~  343 (388)
T d1erja_         291 DSKTPNSGTCEVTYIG--HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL  343 (388)
T ss_dssp             --------CEEEEEEC--CSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEE
T ss_pred             ccccccccceeeeccc--ccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEE
Confidence                      223333  6778999999999999999999999999999887753

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-33  Score=256.69  Aligned_cols=238  Identities=12%  Similarity=0.223  Sum_probs=208.8

Q ss_pred             CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEE
Q 014977           40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII  118 (415)
Q Consensus        40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~v  118 (415)
                      ..+|.+.|.+++|+|++++|++|+ |+.|++||+..........+..+...+..+.+++++..+++++.+     +.|++
T Consensus        93 ~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----~~i~~  167 (337)
T d1gxra_          93 CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD-----GNIAV  167 (337)
T ss_dssp             CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETT-----SCEEE
T ss_pred             ecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccccccccccccccccccccccccccccccccc-----ccccc
Confidence            457899999999999999999999 999999999865555555565778888999999999999998887     99999


Q ss_pred             EECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCC
Q 014977          119 WDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGL  194 (415)
Q Consensus       119 wd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  194 (415)
                      |++.+++...... |...|.+++|++++..++   .|+.|++||+++++.+..+.. ..  .+.++.+++++.++++ |+
T Consensus       168 ~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~-~~--~i~~l~~~~~~~~l~~-~~  243 (337)
T d1gxra_         168 WDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF-TS--QIFSLGYCPTGEWLAV-GM  243 (337)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-SS--CEEEEEECTTSSEEEE-EE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccceeeccccc-cc--ceEEEEEcccccccce-ec
Confidence            9999998887777 889999999999988777   689999999999988877653 33  4666777777778876 66


Q ss_pred             ccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCC
Q 014977          195 QRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQ  274 (415)
Q Consensus       195 ~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~  274 (415)
                      .|+.+++|+.+.........|...|.+++|+|+|++|++++.|+. |++||+.+++.+..+.   |...|.+++|+|+++
T Consensus       244 ~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~-i~iwd~~~~~~~~~~~---~~~~v~~~~~s~d~~  319 (337)
T d1gxra_         244 ESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNL-LNAWRTPYGASIFQSK---ESSSVLSCDISVDDK  319 (337)
T ss_dssp             TTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEEEE---CSSCEEEEEECTTSC
T ss_pred             cccccccccccccccccccccccccceEEECCCCCEEEEEeCCCe-EEEEECCCCCEEEEcc---CCCCEEEEEEeCCCC
Confidence            899999999988888888899999999999999999999999999 9999999999988776   667899999999999


Q ss_pred             EEEEEeCCCeEEEEEc
Q 014977          275 WLAVASDKGTVHIFSL  290 (415)
Q Consensus       275 ~l~s~s~dg~i~vwd~  290 (415)
                      +|++++.||+|+|||+
T Consensus       320 ~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         320 YIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEEEETTSCEEEEEE
T ss_pred             EEEEEeCCCeEEEEEE
Confidence            9999999999999997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.7e-33  Score=251.67  Aligned_cols=283  Identities=12%  Similarity=0.065  Sum_probs=214.1

Q ss_pred             ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (415)
Q Consensus        38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i  116 (415)
                      +...||.+.|++++|+|++++|++|+ |+.|++||+++.+.... ....|...+.++.|++++.+++++. |     +.+
T Consensus         6 ~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~-~~~~h~~~v~~v~~~~~g~~~~~~~-d-----~~v   78 (299)
T d1nr0a2           6 QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRV-FPDVHATMITGIKTTSKGDLFTVSW-D-----DHL   78 (299)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEC-SSCSCSSCEEEEEECTTSCEEEEET-T-----TEE
T ss_pred             eEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE-EcCCCCCcEEEEEeeccceeecccc-e-----eeE
Confidence            35689999999999999999999999 99999999988654432 2235778899999999998776655 3     899


Q ss_pred             EEEECCCCCE----EEEEEccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEE
Q 014977          117 IIWDDHQSRC----IGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLA  190 (415)
Q Consensus       117 ~vwd~~~~~~----~~~~~~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  190 (415)
                      ++|+......    .....+...+.++++++++.+++  .++.+++|+..  +.......  .  ...++++++++.+++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~--~~~~~~~~--~--~~~~~~~s~~~~~l~  152 (299)
T d1nr0a2          79 KVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG--KLTEVPIS--Y--NSSCVALSNDKQFVA  152 (299)
T ss_dssp             EEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETT--EEEEEECS--S--CEEEEEECTTSCEEE
T ss_pred             EEeccCCccccccccccccccccccccccccccccccccccccccccccc--cccccccc--c--ccccccccccccccc
Confidence            9999754321    12233678899999999998777  78999999954  22222222  2  234555566677777


Q ss_pred             EeCCccCeEEEEEcCCcceE--EEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEec-CCCcccEEEE
Q 014977          191 CPGLQRGQVRIEHFGLNMIK--LINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR-GVDRAEIYSI  267 (415)
Q Consensus       191 ~~g~~dg~v~i~~~~~~~~~--~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~-~~~~~~v~~l  267 (415)
                      + |+.|+.|++|+.......  ....|...|.+++|+|++++|++++.|+. |++||+.++..+..... ..|...|+++
T Consensus       153 ~-g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-i~~~~~~~~~~~~~~~~~~~h~~~v~~l  230 (299)
T d1nr0a2         153 V-GGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRK-VIPYSVANNFELAHTNSWTFHTAKVACV  230 (299)
T ss_dssp             E-EETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSC-EEEEEGGGTTEESCCCCCCCCSSCEEEE
T ss_pred             c-ccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence            6 678999999988765443  34578999999999999999999999999 99999988776543321 1267899999


Q ss_pred             EeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccc
Q 014977          268 ALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFS  347 (415)
Q Consensus       268 ~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (415)
                      +|+|++++|++++.||.|++||+++++........                                    .        
T Consensus       231 ~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~------------------------------------~--------  266 (299)
T d1nr0a2         231 SWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKG------------------------------------A--------  266 (299)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTCTTSCCEEETT------------------------------------S--------
T ss_pred             cccccccceEEEcCCCEEEEEECCCCCcceEEEec------------------------------------C--------
Confidence            99999999999999999999999887643100000                                    0        


Q ss_pred             cccceEEEEeCCCceEEEEecCCCEEEEEEeCCcEEEEEEe
Q 014977          348 SEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFD  388 (415)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dg~~~~~~~~  388 (415)
                               -.......+.|.+++.|++++.||.|++|+++
T Consensus       267 ---------~~~~~v~~~~~~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         267 ---------HAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             ---------STTSCEEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred             ---------CCCCcEEEEEECCCCEEEEEeCCCEEEEEecc
Confidence                     01123445666667899999999999999974

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4e-32  Score=247.39  Aligned_cols=281  Identities=12%  Similarity=0.089  Sum_probs=225.0

Q ss_pred             cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~  117 (415)
                      ...+|.+.|++++|+|++++||+|+ ||.|+|||+.+.+....  +..|...+.++.|++++.++++++.|     +.+.
T Consensus        50 tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~--~~~~~~~v~~v~~~~~~~~l~~~~~d-----~~i~  122 (340)
T d1tbga_          50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA--IPLRSSWVMTCAYAPSGNYVACGGLD-----NICS  122 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEE--EECSCSCEEEEEECTTSSEEEEEETT-----CCEE
T ss_pred             EECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEE--EecccccEEeeEeeccceeeeeeccc-----ceee
Confidence            4679999999999999999999999 99999999998766554  34678889999999999999999988     9999


Q ss_pred             EEECCCC----CEEEEEE-ccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEE
Q 014977          118 IWDDHQS----RCIGEFA-FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLA  190 (415)
Q Consensus       118 vwd~~~~----~~~~~~~-~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  190 (415)
                      +|+....    .....+. |...........+.....  .+.....+.............+..  .+......+...+++
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  200 (340)
T d1tbga_         123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG--DVMSLSLAPDTRLFV  200 (340)
T ss_dssp             EEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSS--CEEEEEECTTSSEEE
T ss_pred             cccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccce--eEeeeccccccceeE
Confidence            9996554    3344444 555555555555555555  688888888877666665555554  344445555556666


Q ss_pred             EeCCccCeEEEEEcC-CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEe
Q 014977          191 CPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIAL  269 (415)
Q Consensus       191 ~~g~~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~  269 (415)
                      + |..|+.|++|+.. ++.+..+.+|...|++++|+|++++|++++.|+. |++||+...+.+..+....+...|.+++|
T Consensus       201 ~-~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~-i~~~~~~~~~~~~~~~~~~~~~~i~~~~~  278 (340)
T d1tbga_         201 S-GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT-CRLFDLRADQELMTYSHDNIICGITSVSF  278 (340)
T ss_dssp             E-EETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEECCTTCCSCEEEEEE
T ss_pred             E-eecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCe-EEEEeecccccccccccccccCceEEEEE
Confidence            5 6789999998865 4667788999999999999999999999999999 99999999998888776557778999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccc
Q 014977          270 SPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSE  349 (415)
Q Consensus       270 spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (415)
                      +|++++|++|+.||.|++||+.+++...                                                    
T Consensus       279 s~~~~~l~~g~~dg~i~iwd~~~~~~~~----------------------------------------------------  306 (340)
T d1tbga_         279 SKSGRLLLAGYDDFNCNVWDALKADRAG----------------------------------------------------  306 (340)
T ss_dssp             CSSSCEEEEEETTSCEEEEETTTCCEEE----------------------------------------------------
T ss_pred             CCCCCEEEEEECCCEEEEEECCCCcEEE----------------------------------------------------
Confidence            9999999999999999999998876432                                                    


Q ss_pred             cceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEE
Q 014977          350 WSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCS  386 (415)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~  386 (415)
                          .++.+...+..++|+++ ..|++++.||.|++|+
T Consensus       307 ----~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         307 ----VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             ----EECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             ----EEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence                22223356677899998 6778888899999995

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.2e-33  Score=262.65  Aligned_cols=239  Identities=12%  Similarity=0.131  Sum_probs=197.5

Q ss_pred             CCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECC
Q 014977           44 EIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH  122 (415)
Q Consensus        44 ~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~  122 (415)
                      .++|+|++|+|||++||+|+ ++.|+||++++.+......+++|...|.++.|+|++.+|++++.|     +.|+|||+.
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D-----~~i~vWd~~   81 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD-----RNAYVWTLK   81 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETT-----SCEEEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECC-----CeEEEEeec
Confidence            46799999999999999999 899999999876655556677889999999999999999999988     999999998


Q ss_pred             CCCEEEEEE---ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEE----eccCCCcceEEEecCCCceEEEEe
Q 014977          123 QSRCIGEFA---FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQI----ETLANLRGLCCLSHHSSTSVLACP  192 (415)
Q Consensus       123 ~~~~~~~~~---~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~  192 (415)
                      ++.....+.   |...|.+++|+|+++.++   .|+.|++|++.........    ..+..  .+.++.++|++.+|++ 
T Consensus        82 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~--~v~~v~~~p~~~~l~s-  158 (371)
T d1k8kc_          82 GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS--TVLSLDWHPNSVLLAA-  158 (371)
T ss_dssp             TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS--CEEEEEECTTSSEEEE-
T ss_pred             ccccccccccccccccccccccccccccceeecccCcceeeeeeccccccccccccccccc--ccccccccccccceec-
Confidence            877655554   678899999999998887   6899999998665433222    23333  5667777888888876 


Q ss_pred             CCccCeEEEEEcCC-------------------cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEE
Q 014977          193 GLQRGQVRIEHFGL-------------------NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQ  253 (415)
Q Consensus       193 g~~dg~v~i~~~~~-------------------~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~  253 (415)
                      |+.|+.|++|+...                   ..+.....|...|.+++|+|+|++|++++.|+. |++||+.+++.+.
T Consensus       159 ~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~-i~iwd~~~~~~~~  237 (371)
T d1k8kc_         159 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST-VCLADADKKMAVA  237 (371)
T ss_dssp             EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTE-EEEEEGGGTTEEE
T ss_pred             cccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCc-ceEEeeeccccee
Confidence            67899999998643                   234455678899999999999999999999999 9999999999999


Q ss_pred             EEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977          254 EVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (415)
Q Consensus       254 ~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  294 (415)
                      .+..  |..+|.+++|+|++++|++|. |+.+++|..+...
T Consensus       238 ~~~~--~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~  275 (371)
T d1k8kc_         238 TLAS--ETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAA  275 (371)
T ss_dssp             EEEC--SSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTT
T ss_pred             eeec--ccccceeeeecCCCCEEEEEc-CCceEEEEeeCCC
Confidence            9988  778999999999998887655 7777887776543

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.2e-33  Score=253.21  Aligned_cols=245  Identities=13%  Similarity=0.132  Sum_probs=201.7

Q ss_pred             ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (415)
Q Consensus        38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i  116 (415)
                      ....+|.+.|++++|+|+|++||+|+ |+.|+||++..........+..+...+.++.|++++..+++++.+   .+..+
T Consensus        52 ~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~---~~~~~  128 (311)
T d1nr0a1          52 EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEG---RERFG  128 (311)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECC---SSCSE
T ss_pred             EEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccccccc---ccccc
Confidence            34578999999999999999999999 999999999987766666666788899999999999888777653   22679


Q ss_pred             EEEECCCCCEEEEEE-ccCceeEEEEcCCeEE-EE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEE
Q 014977          117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIV-VV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC  191 (415)
Q Consensus       117 ~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~-~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  191 (415)
                      ++|++++++.+..+. |...|.+++|+|++.+ ++   .|+.|++||+++++....+..|..+  +.++.++|++.++++
T Consensus       129 ~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~--i~~v~~~p~~~~l~~  206 (311)
T d1nr0a1         129 HVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKF--VHSVRYNPDGSLFAS  206 (311)
T ss_dssp             EEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSC--EEEEEECTTSSEEEE
T ss_pred             cccccccccccccccccccccccccccccceeeeccccccccccccccccccccccccccccc--ccccccCcccccccc
Confidence            999999998888877 8889999999998874 33   5899999999999999888888774  455666667778876


Q ss_pred             eCCccCeEEEEEcCCc-ceEEE-------ecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCC-cc
Q 014977          192 PGLQRGQVRIEHFGLN-MIKLI-------NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVD-RA  262 (415)
Q Consensus       192 ~g~~dg~v~i~~~~~~-~~~~~-------~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~-~~  262 (415)
                       ++.|+.|++|+.... ....+       .+|...|++++|+|++++|++|+.||. |+|||++++++++++..+.. ..
T Consensus       207 -~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~-v~iwd~~t~~~~~~l~~~~~~~~  284 (311)
T d1nr0a1         207 -TGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT-IKIWNVATLKVEKTIPVGTRIED  284 (311)
T ss_dssp             -EETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTTEEEEEEECCSSGGG
T ss_pred             -ccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCe-EEEEECCCCcEEEEEECCCCccc
Confidence             668999999987643 33332       358889999999999999999999999 99999999999999886421 23


Q ss_pred             cEEEEEeCCCCCEEEEEeCCCeEEEEEce
Q 014977          263 EIYSIALSPNVQWLAVASDKGTVHIFSLR  291 (415)
Q Consensus       263 ~v~~l~~spdg~~l~s~s~dg~i~vwd~~  291 (415)
                      .+.++.|+  +.+|++++.||.|++||.+
T Consensus       285 ~~~~~~~~--~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         285 QQLGIIWT--KQALVSISANGFINFVNPE  311 (311)
T ss_dssp             CEEEEEEC--SSCEEEEETTCCEEEEETT
T ss_pred             eEEEEEec--CCEEEEEECCCEEEEEeCC
Confidence            45556654  5679999999999999974

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=5.7e-31  Score=239.85  Aligned_cols=241  Identities=13%  Similarity=0.107  Sum_probs=181.6

Q ss_pred             ceEEEEEeCCCCEEEEEeCCcE--EEEEccCCceeEEEeccCC-CeeEEEEeeeC--CeEEEEecCCCCCCCCCeEEEEE
Q 014977           46 ELISVSWNQDYGCFAAGTSCGF--RIYNCEPFKETFRRDLKSG-GFRIVEMLFRC--NILALVGAGDNSQYPPTKVIIWD  120 (415)
Q Consensus        46 ~V~~l~~sp~g~~la~g~d~~v--~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~l~s~~~d~~~~~~~i~vwd  120 (415)
                      .+++++|+|++..|+++++..+  +.|+...........+.+| ...+.++.|+|  ++.++++++.|     ++|++||
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~D-----g~i~iWd   93 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDES-----GKVIVWG   93 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETT-----SEEEEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCC-----CCEEEee
Confidence            4678899999999999885554  4455433222222233355 46788999987  67899999988     9999999


Q ss_pred             CCCCCEE--------EEEE-ccCceeEEEEcCCeEEEE-----eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCc
Q 014977          121 DHQSRCI--------GEFA-FRSDVRSVKLSRDRIVVV-----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSST  186 (415)
Q Consensus       121 ~~~~~~~--------~~~~-~~~~i~~l~~~~~~~~~~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (415)
                      +..++..        ..+. +..+|.+++|++++..++     .++.+++|+..+++.+..+..|...+..+++  ++++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~  171 (325)
T d1pgua1          94 WTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHL--KQSR  171 (325)
T ss_dssp             EEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEE--CSSS
T ss_pred             ecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccc--cccc
Confidence            7654321        1222 678999999999998876     3678999999999999999888875554444  4455


Q ss_pred             eEEEEeCCccCeEEEEEcCCc-ceEEE---ecCccceEEEEeCCC-CCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCc
Q 014977          187 SVLACPGLQRGQVRIEHFGLN-MIKLI---NAHDSHIACFTLTLD-GLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDR  261 (415)
Q Consensus       187 ~~l~~~g~~dg~v~i~~~~~~-~~~~~---~~~~~~i~~l~~sp~-g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~  261 (415)
                      ..++.+++.|+.+++|+.... ....+   ..|...|.+++|+|+ +.+|++++.|+. |++||+++++.+..+..  |.
T Consensus       172 ~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~-i~iwd~~~~~~~~~l~~--~~  248 (325)
T d1pgua1         172 PMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK-ISCFDGKSGEFLKYIED--DQ  248 (325)
T ss_dssp             SCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC-EEEEETTTCCEEEECCB--TT
T ss_pred             cceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccc-eeeeeeccccccccccc--cc
Confidence            444445678999999986543 23333   356788999999996 689999999999 99999999999999987  55


Q ss_pred             ccEEEEEeC---CCCCEEEEEeCCCeEEEEEceecccC
Q 014977          262 AEIYSIALS---PNVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       262 ~~v~~l~~s---pdg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                      ..+..+.|+   |+|++|++++.|+.|+|||+++++..
T Consensus       249 ~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~  286 (325)
T d1pgua1         249 EPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCV  286 (325)
T ss_dssp             BCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             cccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEE
Confidence            555444444   68999999999999999999987743

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.3e-29  Score=235.68  Aligned_cols=242  Identities=17%  Similarity=0.230  Sum_probs=198.5

Q ss_pred             CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEE
Q 014977           40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII  118 (415)
Q Consensus        40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~v  118 (415)
                      ...|...|++++|+|++++|++|+ |+.|++|+....+....  +..|...+.++.+.+++..++.++.+     +.+++
T Consensus       117 ~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~~~~~~-----~~i~~  189 (388)
T d1erja_         117 SPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMI--LQGHEQDIYSLDYFPSGDKLVSGSGD-----RTVRI  189 (388)
T ss_dssp             --CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE--ECCCSSCEEEEEECTTSSEEEEEETT-----SEEEE
T ss_pred             ccCCCCCEEEEEECCCCCcceecccccccccccccccccccc--cccccccccccccccccccccccccc-----eeeee
Confidence            456888999999999999999999 99999999988665544  33778889999999998888888877     99999


Q ss_pred             EECCCCCEEEEEEccCceeEEEEcC-CeEEEE---eCCeEEEEEcCCceeeeEEeccC-----CCcceEEEecCCCceEE
Q 014977          119 WDDHQSRCIGEFAFRSDVRSVKLSR-DRIVVV---LEHKIYVYSFVDLKLLHQIETLA-----NLRGLCCLSHHSSTSVL  189 (415)
Q Consensus       119 wd~~~~~~~~~~~~~~~i~~l~~~~-~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l  189 (415)
                      ||..+........+......+.+.+ ++.+++   .|+.|++||+.+++.+..+....     ....+.++.+++++.+|
T Consensus       190 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l  269 (388)
T d1erja_         190 WDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSV  269 (388)
T ss_dssp             EETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEE
T ss_pred             eeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEE
Confidence            9999998888887666666666655 677766   68999999999888776664221     12246667777778888


Q ss_pred             EEeCCccCeEEEEEcCC-------------cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEe
Q 014977          190 ACPGLQRGQVRIEHFGL-------------NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVR  256 (415)
Q Consensus       190 ~~~g~~dg~v~i~~~~~-------------~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~  256 (415)
                      ++ |+.|+.|++|+...             ........|...|.+++|+|+|++|++|+.||. |++||+++++++.++.
T Consensus       270 ~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~-i~vwd~~~~~~~~~l~  347 (388)
T d1erja_         270 VS-GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG-VLFWDKKSGNPLLMLQ  347 (388)
T ss_dssp             EE-EETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSE-EEEEETTTCCEEEEEE
T ss_pred             EE-EECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCE-EEEEECCCCcEEEEEe
Confidence            76 66899999998653             224455678999999999999999999999999 9999999999999999


Q ss_pred             cCCCcccEEEEE------eCCCCCEEEEEeCCCeEEEEEcee
Q 014977          257 RGVDRAEIYSIA------LSPNVQWLAVASDKGTVHIFSLRV  292 (415)
Q Consensus       257 ~~~~~~~v~~l~------~spdg~~l~s~s~dg~i~vwd~~~  292 (415)
                      +  |.+.|.+++      |+|++++|++|+.||+|+||++++
T Consensus       348 ~--H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~k  387 (388)
T d1erja_         348 G--HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  387 (388)
T ss_dssp             C--CSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             C--CCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeeee
Confidence            8  888999987      567999999999999999999974

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=7.4e-29  Score=222.46  Aligned_cols=241  Identities=11%  Similarity=0.212  Sum_probs=207.9

Q ss_pred             ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (415)
Q Consensus        38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i  116 (415)
                      ....+|...|.+++|+|++.+++++. ++.+.+|+........  .+..+...+..+.+.+++..+++++.|     +.+
T Consensus        53 ~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d-----~~~  125 (317)
T d1vyhc1          53 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIR--TMHGHDHNVSSVSIMPNGDHIVSASRD-----KTI  125 (317)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEE--CCCCCSSCEEEEEECSSSSEEEEEETT-----SEE
T ss_pred             EEEeCCCCcEEEEeeeccccccccccccccccccccccccccc--ccccccccceeeeccCCCceEEeeccC-----cce
Confidence            34568999999999999999999999 8999999988655433  344778888899999999889988887     999


Q ss_pred             EEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCC--------
Q 014977          117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHS--------  184 (415)
Q Consensus       117 ~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--------  184 (415)
                      ++||+.+++.+..+. |...+.++++++++.+++   .|+.|++|++.+++.+..+..+...+..+.+.+..        
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  205 (317)
T d1vyhc1         126 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEA  205 (317)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGC
T ss_pred             eEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeecc
Confidence            999999999999888 889999999999998887   68999999999999888888777655544444332        


Q ss_pred             ----------CceEEEEeCCccCeEEEEEcC-CcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEE
Q 014977          185 ----------STSVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQ  253 (415)
Q Consensus       185 ----------~~~~l~~~g~~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~  253 (415)
                                .+.+++ +++.|+.|++|+.. ++.+..+.+|...|.+++|+|++++|++++.||. |+|||+++++++.
T Consensus       206 ~~~~~~~~~~~~~~~~-~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~  283 (317)
T d1vyhc1         206 TGSETKKSGKPGPFLL-SGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT-LRVWDYKNKRCMK  283 (317)
T ss_dssp             CSCC-------CCEEE-EEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTE-EEEECCTTSCCCE
T ss_pred             ccceeeeeccCCceeE-eccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCe-EEEEECCCCcEEE
Confidence                      123444 46789999998865 4667888999999999999999999999999999 9999999999999


Q ss_pred             EEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEE
Q 014977          254 EVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFS  289 (415)
Q Consensus       254 ~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd  289 (415)
                      .+.+  |...|++++|+|++++|++|+.||+|+|||
T Consensus       284 ~~~~--h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         284 TLNA--HEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEC--CSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEcC--CCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            9998  888999999999999999999999999997

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=4.7e-28  Score=220.91  Aligned_cols=273  Identities=14%  Similarity=0.170  Sum_probs=193.4

Q ss_pred             cCCCCCCce-EEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977           39 FSDVDEIEL-ISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (415)
Q Consensus        39 ~~~~h~~~V-~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i  116 (415)
                      ...+|.+.| +|++|  ++++|++|+ |+.|+|||+.+.+.+..  +.+|...|.++.|++++ .+++++.|     +.|
T Consensus         7 tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~--l~~H~~~V~~l~~s~~~-~l~s~s~D-----~~i   76 (355)
T d1nexb2           7 TLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQ--LSGHDGGVWALKYAHGG-ILVSGSTD-----RTV   76 (355)
T ss_dssp             EEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEE--EECCSSCEEEEEEETTT-EEEEEETT-----CCE
T ss_pred             EECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEE--EECCCCCEEEEEEcCCC-EEEEEecc-----ccc
Confidence            467898886 55554  678999999 99999999998765544  45788899999999876 46677777     999


Q ss_pred             EEEECCCCCEEEEEEc---cCceeEEEEcCCeEEEE---eCCeEEEEEcCCce---------------------------
Q 014977          117 IIWDDHQSRCIGEFAF---RSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLK---------------------------  163 (415)
Q Consensus       117 ~vwd~~~~~~~~~~~~---~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~---------------------------  163 (415)
                      ++|+....+.......   ........+.+++..++   .|+.|++||+.+..                           
T Consensus        77 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (355)
T d1nexb2          77 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV  156 (355)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEE
T ss_pred             ccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeee
Confidence            9999988877766652   23344455667776665   56777777764432                           


Q ss_pred             ------------------------------------eeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcC-C
Q 014977          164 ------------------------------------LLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFG-L  206 (415)
Q Consensus       164 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~-~  206 (415)
                                                          .+.....+..  ....+.+++.+..+++ ++.|+.|++|+.. +
T Consensus       157 ~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~d~~i~i~d~~~~  233 (355)
T d1nexb2         157 LRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTD--RIYSTIYDHERKRCIS-ASMDTTIRIWDLENG  233 (355)
T ss_dssp             EECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEEETTTTEEEE-EETTSCEEEEETTTC
T ss_pred             eeeccccccccccccceeeeecccceeeeeecccccceeeeecccc--ccccccccccceeeec-ccccceEEeeecccc
Confidence                                                2222222222  2334444555666665 6689999998765 4


Q ss_pred             cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEE-EeCCCCCEEEEEeCCCeE
Q 014977          207 NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSI-ALSPNVQWLAVASDKGTV  285 (415)
Q Consensus       207 ~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l-~~spdg~~l~s~s~dg~i  285 (415)
                      ..+..+.+|...|.++++++  ++|++++.||. |++||++++.......    ...+..+ .+++++++|++++ ||.|
T Consensus       234 ~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~-i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~g~-d~~i  305 (355)
T d1nexb2         234 ELMYTLQGHTALVGLLRLSD--KFLVSAAADGS-IRGWDANDYSRKFSYH----HTNLSAITTFYVSDNILVSGS-ENQF  305 (355)
T ss_dssp             CEEEEECCCSSCCCEEEECS--SEEEEECTTSE-EEEEETTTCCEEEEEE----CTTCCCCCEEEECSSEEEEEE-TTEE
T ss_pred             cccccccccccccccccccc--ceeeeeecccc-cccccccccceecccc----cCCceEEEEEcCCCCEEEEEe-CCEE
Confidence            66778899999999999964  68999999999 9999999887654443    2334443 5677888777665 8999


Q ss_pred             EEEEceecccCCC-CCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEE
Q 014977          286 HIFSLRVRVVGED-SSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFI  364 (415)
Q Consensus       286 ~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (415)
                      +|||+++++.... ...                                                        +.+.+..
T Consensus       306 ~vwd~~tg~~~~~~~~~--------------------------------------------------------~~~~V~~  329 (355)
T d1nexb2         306 NIYNLRSGKLVHANILK--------------------------------------------------------DADQIWS  329 (355)
T ss_dssp             EEEETTTCCBCCSCTTT--------------------------------------------------------TCSEEEE
T ss_pred             EEEECCCCCEEEEEecC--------------------------------------------------------CCCCEEE
Confidence            9999999875421 000                                                        1134556


Q ss_pred             EEecCCCEEEEEEeCCcEEEEEEe
Q 014977          365 AAFGSQNTVVIVSMDGSFYRCSFD  388 (415)
Q Consensus       365 ~~~~~~~~i~~~~~dg~~~~~~~~  388 (415)
                      ++|+++..+++++.||.+++|.+|
T Consensus       330 v~~~~~~~~~~~s~dg~~~l~~~d  353 (355)
T d1nexb2         330 VNFKGKTLVAAVEKDGQSFLEILD  353 (355)
T ss_dssp             EEEETTEEEEEEESSSCEEEEEEE
T ss_pred             EEEcCCeEEEEEECCCcEEEEEEe
Confidence            789887666667779999998776

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=1.1e-28  Score=228.62  Aligned_cols=236  Identities=15%  Similarity=0.168  Sum_probs=188.6

Q ss_pred             eeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCC--EEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCC
Q 014977           88 FRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR--CIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVD  161 (415)
Q Consensus        88 ~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~--~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~  161 (415)
                      ..|.+++|++++.++++++.+     +.|++||+.+++  .+..++ |...|.+++|+|++.+++   .|+.|++||+.+
T Consensus         8 ~pIt~~~~s~dg~~la~~~~~-----~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~   82 (371)
T d1k8kc_           8 EPISCHAWNKDRTQIAICPNN-----HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG   82 (371)
T ss_dssp             SCCCEEEECTTSSEEEEECSS-----SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred             CCeEEEEECCCCCEEEEEeCC-----CEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecc
Confidence            457889999999999998887     999999998775  455565 899999999999998887   689999999987


Q ss_pred             ceeeeEE--eccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcc-----eEEEecCccceEEEEeCCCCCEEEEE
Q 014977          162 LKLLHQI--ETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNM-----IKLINAHDSHIACFTLTLDGLLLATA  234 (415)
Q Consensus       162 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~-----~~~~~~~~~~i~~l~~sp~g~~l~s~  234 (415)
                      +.....+  ..+..  .+.++.++|++..+++ |+.|+.+++|......     ......|...|.+++|+|++++|++|
T Consensus        83 ~~~~~~~~~~~~~~--~v~~i~~~p~~~~l~~-~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~  159 (371)
T d1k8kc_          83 RTWKPTLVILRINR--AARCVRWAPNEKKFAV-GSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG  159 (371)
T ss_dssp             TEEEEEEECCCCSS--CEEEEEECTTSSEEEE-EETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEE
T ss_pred             cccccccccccccc--ccccccccccccccee-ecccCcceeeeeecccccccccccccccccccccccccccccceecc
Confidence            7655444  34444  5566667777778876 6689999997765422     22334688999999999999999999


Q ss_pred             eCCCcEEEEEECCCC------------------cEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977          235 STRGTLIRIFNTVDG------------------TRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       235 s~dg~~I~vwd~~~~------------------~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                      +.|+. |++||....                  +.+.....  |...|.+++|+|++++|++++.|+.|++||+.+++..
T Consensus       160 s~D~~-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~  236 (371)
T d1k8kc_         160 SCDFK-CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS--SCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV  236 (371)
T ss_dssp             ETTSC-EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC--CSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEE
T ss_pred             ccCcE-EEEEeeccCccccccccccccccccceeeeeeccC--ccCcEEEEEeecccccccccccCCcceEEeeecccce
Confidence            99999 999997643                  23444444  7788999999999999999999999999999877643


Q ss_pred             CCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCCCEEEEE
Q 014977          297 EDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIV  376 (415)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  376 (415)
                                                                              ..+......+..++|++++.++++
T Consensus       237 --------------------------------------------------------~~~~~~~~~v~s~~fs~d~~~la~  260 (371)
T d1k8kc_         237 --------------------------------------------------------ATLASETLPLLAVTFITESSLVAA  260 (371)
T ss_dssp             --------------------------------------------------------EEEECSSCCEEEEEEEETTEEEEE
T ss_pred             --------------------------------------------------------eeeecccccceeeeecCCCCEEEE
Confidence                                                                    133333445667899999999999


Q ss_pred             EeCCcEEEEEEecC
Q 014977          377 SMDGSFYRCSFDPV  390 (415)
Q Consensus       377 ~~dg~~~~~~~~~~  390 (415)
                      |.||.+.+|..+..
T Consensus       261 g~d~~~~~~~~~~~  274 (371)
T d1k8kc_         261 GHDCFPVLFTYDSA  274 (371)
T ss_dssp             ETTSSCEEEEEETT
T ss_pred             EcCCceEEEEeeCC
Confidence            99999999988763

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=8.1e-28  Score=214.32  Aligned_cols=263  Identities=9%  Similarity=0.071  Sum_probs=203.5

Q ss_pred             cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~  117 (415)
                      ...+|.++|++++|+|    |++|+ ||.|++||+.+..       ..|...+.++.+.++.. +++++.|     ++|+
T Consensus         8 ~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~-------~~h~~~V~~~~~~~~~~-~~s~s~D-----~~v~   70 (287)
T d1pgua2           8 TISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH-------QDHSNLIVSLDNSKAQE-YSSISWD-----DTLK   70 (287)
T ss_dssp             EECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEE-------CCCCSCEEEEECCSTTC-CEEEETT-----TEEE
T ss_pred             EECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCC-------CCCCCCEEEEEecCCCe-EEEEeec-----cccc
Confidence            4679999999999987    88888 9999999987522       26777888999987765 4666666     9999


Q ss_pred             EEECCCCCEEEEEEccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCc
Q 014977          118 IWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ  195 (415)
Q Consensus       118 vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  195 (415)
                      +|++..      ..+...+..+.+++++..++  .++.+.+|+..+++.+..+....   ...++++++  ..+++++..
T Consensus        71 ~w~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~v~~~~  139 (287)
T d1pgua2          71 VNGITK------HEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNS---PGSAVSLSQ--NYVAVGLEE  139 (287)
T ss_dssp             ETTEEE------EECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSS---CEEEEEECS--SEEEEEETT
T ss_pred             cccccc------cccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccc---eeeeeeccC--cceeeeccc
Confidence            998532      34566788899999988877  68889999999988888776544   345666654  355555655


Q ss_pred             cCeEEEEEcCCcce-EEE-ecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEE-EecCCCcccEEEEEeCCC
Q 014977          196 RGQVRIEHFGLNMI-KLI-NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQE-VRRGVDRAEIYSIALSPN  272 (415)
Q Consensus       196 dg~v~i~~~~~~~~-~~~-~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~-~~~~~~~~~v~~l~~spd  272 (415)
                      ++.+++|+...... ..+ ..|...+.+++|+|+|.+|++++.||. |++||+.+++.... +..  |...|.+++|+|+
T Consensus       140 ~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~-i~i~d~~~~~~~~~~~~~--h~~~v~~~~~~p~  216 (287)
T d1pgua2         140 GNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGK-ILLYDLQSREVKTSRWAF--RTSKINAISWKPA  216 (287)
T ss_dssp             TSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEECCSCC--CSSCEEEEEECCC
T ss_pred             cceeeeeeccccceeeeeeeccCCceeEEEeccCcccccccccccc-ccceeecccccccccccc--cccccceeeeccc
Confidence            67899998765332 222 347788999999999999999999999 99999998887654 333  7889999999875


Q ss_pred             ----------CCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCccccccccc
Q 014977          273 ----------VQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVL  342 (415)
Q Consensus       273 ----------g~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (415)
                                +.+|++|+.|++|+|||++++.+...                                            
T Consensus       217 ~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~--------------------------------------------  252 (287)
T d1pgua2         217 EKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIK--------------------------------------------  252 (287)
T ss_dssp             C------CCSCCEEEEEETTSCEEEEESSCTTCCEE--------------------------------------------
T ss_pred             ccccccccCCCCeeEeecCCCeEEEEECCCCCeEEE--------------------------------------------
Confidence                      46899999999999999977542210                                            


Q ss_pred             CcccccccceEEEEeCCCceEEEEecCCCEEEEEEeCCcEEEEEE
Q 014977          343 PKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSF  387 (415)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dg~~~~~~~  387 (415)
                                 ........+..+.|++++.+++++.||.|++|++
T Consensus       253 -----------~~~~h~~~V~~v~~~~~~~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         253 -----------ALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV  286 (287)
T ss_dssp             -----------ETTSSTTCEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred             -----------EeCCCCCCeEEEEECCCCEEEEEECCCeEEEEEE
Confidence                       0001124567788999999999999999999986

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.5e-28  Score=222.12  Aligned_cols=246  Identities=12%  Similarity=0.092  Sum_probs=185.6

Q ss_pred             cCCCC-CCceEEEEEeC--CCCEEEEEe-CCcEEEEEccCCceeEE------EeccCCCeeEEEEeeeCCeEEEEecCCC
Q 014977           39 FSDVD-EIELISVSWNQ--DYGCFAAGT-SCGFRIYNCEPFKETFR------RDLKSGGFRIVEMLFRCNILALVGAGDN  108 (415)
Q Consensus        39 ~~~~h-~~~V~~l~~sp--~g~~la~g~-d~~v~iw~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~s~~~d  108 (415)
                      ...+| ...|++++|+|  ++.+||+|+ ||.|+|||+........      ..+..+...+.++.|++++..++.++.+
T Consensus        57 ~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~  136 (325)
T d1pgua1          57 QFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG  136 (325)
T ss_dssp             EECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECC
T ss_pred             EEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeecc
Confidence            34566 56899999998  678999999 99999999965332211      1223566778899999988766554432


Q ss_pred             CCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEE-E---eCCeEEEEEcCCceeeeEEeccC-CCcceEEEec
Q 014977          109 SQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVV-V---LEHKIYVYSFVDLKLLHQIETLA-NLRGLCCLSH  182 (415)
Q Consensus       109 ~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~-~---~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~  182 (415)
                         .++.+.+|+..+++.+..+. |...|.+++|+|++..+ +   .|+.+++||+...+....+..+. ....+.++++
T Consensus       137 ---~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~  213 (325)
T d1pgua1         137 ---RDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEF  213 (325)
T ss_dssp             ---SSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEE
T ss_pred             ---ccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeee
Confidence               22789999999999999888 89999999999987543 2   58999999998888776664432 2234556666


Q ss_pred             CCC-ceEEEEeCCccCeEEEEEcC-CcceEEEecCccceEEEEeC---CCCCEEEEEeCCCcEEEEEECCCCcEEEEEec
Q 014977          183 HSS-TSVLACPGLQRGQVRIEHFG-LNMIKLINAHDSHIACFTLT---LDGLLLATASTRGTLIRIFNTVDGTRLQEVRR  257 (415)
Q Consensus       183 ~~~-~~~l~~~g~~dg~v~i~~~~-~~~~~~~~~~~~~i~~l~~s---p~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~  257 (415)
                      +|+ +.++++ ++.|+.|++|+.. ++.+..+.+|..++..+.|+   |+|++|++++.|+. |+|||+++++++..+..
T Consensus       214 ~pd~~~~l~s-~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~-i~iwd~~~~~~~~~~~~  291 (325)
T d1pgua1         214 SPDSGEFVIT-VGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADAT-IRVWDVTTSKCVQKWTL  291 (325)
T ss_dssp             CSTTCCEEEE-EETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSE-EEEEETTTTEEEEEEEC
T ss_pred             ccccceeccc-cccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCe-EEEEECCCCCEEEEEEe
Confidence            664 455554 6689999999865 56677888888887666655   78999999999999 99999999999998887


Q ss_pred             CCCcccEEE--EEeCCCCCEEEEEeCCCeEEEEEc
Q 014977          258 GVDRAEIYS--IALSPNVQWLAVASDKGTVHIFSL  290 (415)
Q Consensus       258 ~~~~~~v~~--l~~spdg~~l~s~s~dg~i~vwd~  290 (415)
                      +.+...+..  +.|.++ .+|++++.||+|+|||+
T Consensus       292 ~~~~~~~~~~~~~~~~~-~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         292 DKQQLGNQQVGVVATGN-GRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             CTTCGGGCEEEEEEEET-TEEEEEETTSCEEEEET
T ss_pred             cCCcccCeEEEEEECCC-CEEEEEECCCEEEEEEC
Confidence            545444444  444443 47889999999999996

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.4e-26  Score=209.98  Aligned_cols=238  Identities=17%  Similarity=0.260  Sum_probs=175.8

Q ss_pred             cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~  117 (415)
                      ...+|.+.|.+ +++++|++||+|+ |+.|+|||+.+++...  .+.+|...+.++.|+++  ++++++.|     +.++
T Consensus        11 ~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~--~~~~h~~~V~~v~~~~~--~l~s~s~D-----~~~~   80 (342)
T d2ovrb2          11 VLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR--TLVGHTGGVWSSQMRDN--IIISGSTD-----RTLK   80 (342)
T ss_dssp             EEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE--ECCCCSSCEEEEEEETT--EEEEEETT-----SCEE
T ss_pred             EECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEE--EEeCCCCCEEEEEeCCC--ccccceec-----cccc
Confidence            46799999876 4777899999999 9999999999866543  45688889999999987  66777776     8999


Q ss_pred             EEECCCCCEEEEEE-ccCceeEEEEcC---------------------------------------CeEEEE--eCCeEE
Q 014977          118 IWDDHQSRCIGEFA-FRSDVRSVKLSR---------------------------------------DRIVVV--LEHKIY  155 (415)
Q Consensus       118 vwd~~~~~~~~~~~-~~~~i~~l~~~~---------------------------------------~~~~~~--~d~~i~  155 (415)
                      +|+........... +...+......+                                       ....+.  .++.|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~  160 (342)
T d2ovrb2          81 VWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVK  160 (342)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEE
T ss_pred             ccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEE
Confidence            99876655443332 121221111111                                       111122  578888


Q ss_pred             EEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCCEEEEE
Q 014977          156 VYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATA  234 (415)
Q Consensus       156 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~  234 (415)
                      +||+...+.+..+..|..  ....+.+++  ..+++ |+.||.|++|+... +.+..+..|...+.++++++  ++|+++
T Consensus       161 ~~d~~~~~~~~~~~~~~~--~~~~~~~~~--~~l~s-~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~  233 (342)
T d2ovrb2         161 VWDPETETCLHTLQGHTN--RVYSLQFDG--IHVVS-GSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSG  233 (342)
T ss_dssp             EEEGGGTEEEEEECCCSS--CEEEEEECS--SEEEE-EETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--TEEEEE
T ss_pred             EeecccceeeEEEcCccc--ccccccCCC--CEEEE-EeCCCeEEEeecccceeeeEecccccceeEEecCC--CEEEEE
Confidence            888888787777776654  455555543  45655 67899999988765 56777889999998887764  699999


Q ss_pred             eCCCcEEEEEECCCCcEEEEEecC-CCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977          235 STRGTLIRIFNTVDGTRLQEVRRG-VDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       235 s~dg~~I~vwd~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                      +.|+. |++||+...+....+... .|...+.++.++  ++++++++.||+|+|||+++++..
T Consensus       234 s~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i  293 (342)
T d2ovrb2         234 NADST-VKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFI  293 (342)
T ss_dssp             ETTSC-EEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEE
T ss_pred             cCCCE-EEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEE
Confidence            99999 999999999888877653 244567777765  569999999999999999988743

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=3.2e-26  Score=207.80  Aligned_cols=239  Identities=13%  Similarity=0.146  Sum_probs=191.1

Q ss_pred             cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCce--eEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCe
Q 014977           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKE--TFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTK  115 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~  115 (415)
                      ....|...|.+++|+|++.++++|+ |+.+++|+......  .....+..+...........+.........      ..
T Consensus        92 ~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~  165 (340)
T d1tbga_          92 AIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGD------TT  165 (340)
T ss_dssp             EEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETT------TE
T ss_pred             EEecccccEEeeEeeccceeeeeecccceeecccccccccccccceeccccccccccccccccccccccccc------cc
Confidence            3457899999999999999999999 99999999865332  222334345555555555555554444433      78


Q ss_pred             EEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEE
Q 014977          116 VIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC  191 (415)
Q Consensus       116 i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  191 (415)
                      ...+............ +...+....+.+.+.+++   .|+.|++||+++++.+..+..|...+  .+++++|++.+|++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i--~~v~~~p~~~~l~s  243 (340)
T d1tbga_         166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDI--NAICFFPNGNAFAT  243 (340)
T ss_dssp             EEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCE--EEEEECTTSSEEEE
T ss_pred             ccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCe--EEEEECCCCCEEEE
Confidence            8888877766655555 678888999998887776   68999999999999999998888744  45555667777776


Q ss_pred             eCCccCeEEEEEcCCcce-EEE--ecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEE
Q 014977          192 PGLQRGQVRIEHFGLNMI-KLI--NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIA  268 (415)
Q Consensus       192 ~g~~dg~v~i~~~~~~~~-~~~--~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~  268 (415)
                       |+.|+.|++|+...... ..+  ..+...|.+++|+|++++|++|+.||. |++||+.+++.+..+.+  |.+.|++++
T Consensus       244 -~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~-i~iwd~~~~~~~~~~~~--H~~~V~~l~  319 (340)
T d1tbga_         244 -GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN-CNVWDALKADRAGVLAG--HDNRVSCLG  319 (340)
T ss_dssp             -EETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSC-EEEEETTTCCEEEEECC--CSSCEEEEE
T ss_pred             -EeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCE-EEEEECCCCcEEEEEcC--CCCCEEEEE
Confidence             66899999998876443 333  356678999999999999999999999 99999999999999998  888999999


Q ss_pred             eCCCCCEEEEEeCCCeEEEEE
Q 014977          269 LSPNVQWLAVASDKGTVHIFS  289 (415)
Q Consensus       269 ~spdg~~l~s~s~dg~i~vwd  289 (415)
                      |+|++++|++|+.||+|+|||
T Consensus       320 ~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         320 VTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             ECTTSSCEEEEETTSCEEEEC
T ss_pred             EeCCCCEEEEEccCCEEEEeC
Confidence            999999999999999999997

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1e-26  Score=217.10  Aligned_cols=254  Identities=11%  Similarity=0.168  Sum_probs=174.6

Q ss_pred             ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCc------eeEEEeccCCCeeEE-----E-Eeee-CCeEEEE
Q 014977           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFK------ETFRRDLKSGGFRIV-----E-MLFR-CNILALV  103 (415)
Q Consensus        38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~------~~~~~~~~~~~~~~~-----~-~~~~-~~~~~l~  103 (415)
                      ....+|.+.|+++++++  ++|++++ |+.|+||+..+.+      ......  .+...+.     . .... .+..+++
T Consensus         8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF--VHKSGLHHVDVLQAIERDAFELCLVA   83 (393)
T ss_dssp             EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE--CCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             ecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeee--eccCCceEeeeEeeeccCCCCCcEEE
Confidence            34689999999999875  6899999 9999999976532      112211  2222211     1 1112 2356777


Q ss_pred             ecCCCCCCCCCeEEEEECCCCCE---EEE--EE------ccCceeEEEEcCCe-----EEEE---eCCeEEEEEcCCce-
Q 014977          104 GAGDNSQYPPTKVIIWDDHQSRC---IGE--FA------FRSDVRSVKLSRDR-----IVVV---LEHKIYVYSFVDLK-  163 (415)
Q Consensus       104 s~~~d~~~~~~~i~vwd~~~~~~---~~~--~~------~~~~i~~l~~~~~~-----~~~~---~d~~i~iwd~~~~~-  163 (415)
                      +++.|     +.|++|++.....   ...  ..      +...+..+++.++.     .+++   .|+.+++|++.... 
T Consensus        84 s~~~d-----g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~  158 (393)
T d1sq9a_          84 TTSFS-----GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD  158 (393)
T ss_dssp             EEETT-----SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred             EEeCC-----CcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCc
Confidence            88877     9999999654321   111  11      34567778887653     3333   69999999974211 


Q ss_pred             --------------eeeEEec-cCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC-cceE------EEecCccceEE
Q 014977          164 --------------LLHQIET-LANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-NMIK------LINAHDSHIAC  221 (415)
Q Consensus       164 --------------~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~-~~~~------~~~~~~~~i~~  221 (415)
                                    ....... ......+.++.+++++ +++ +|+.|++|++|+... +.+.      .+.+|..+|.+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~la-sgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~  236 (393)
T d1sq9a_         159 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIA-TGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRS  236 (393)
T ss_dssp             HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEE-EECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEE
T ss_pred             ccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEE-EEeCCCcEEEEeecccccccccccccccccccceEEE
Confidence                          0011111 1111234556666666 555 488999999998764 3333      34578999999


Q ss_pred             EEeCCCCCEEEEEeCCCc--EEEEEECCCCcEEEEEec-----------CCCcccEEEEEeCCCCCEEEEEeCCCeEEEE
Q 014977          222 FTLTLDGLLLATASTRGT--LIRIFNTVDGTRLQEVRR-----------GVDRAEIYSIALSPNVQWLAVASDKGTVHIF  288 (415)
Q Consensus       222 l~~sp~g~~l~s~s~dg~--~I~vwd~~~~~~~~~~~~-----------~~~~~~v~~l~~spdg~~l~s~s~dg~i~vw  288 (415)
                      ++|+|+|++|++|+.|+.  .|++||+++++.+..+..           ..|...|++++|+||+++|++++.|++|+||
T Consensus       237 l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vW  316 (393)
T d1sq9a_         237 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW  316 (393)
T ss_dssp             EEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred             cccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEE
Confidence            999999999999998863  289999999998887752           1277899999999999999999999999999


Q ss_pred             EceecccCCCCCCC
Q 014977          289 SLRVRVVGEDSSSS  302 (415)
Q Consensus       289 d~~~~~~~~~~~~~  302 (415)
                      |+++++...++..|
T Consensus       317 d~~~g~~~~~l~gH  330 (393)
T d1sq9a_         317 DVKTKERITTLNMH  330 (393)
T ss_dssp             ETTTTEEEEEEECC
T ss_pred             ECCCCCEEEEECCc
Confidence            99999877655555

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=4.6e-27  Score=212.71  Aligned_cols=254  Identities=12%  Similarity=-0.006  Sum_probs=174.3

Q ss_pred             CCccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEE-EeccCCCeeEEEEeeeCC-eEEEEecCCCCCCC
Q 014977           36 QTAFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFR-RDLKSGGFRIVEMLFRCN-ILALVGAGDNSQYP  112 (415)
Q Consensus        36 ~~~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~~~  112 (415)
                      +.+...+|++.|++|+|+|++++||+|+ |+.|+|||++....... .....|...|.+++|+++ +..+++++.|    
T Consensus         3 ~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d----   78 (342)
T d1yfqa_           3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQ----   78 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETT----
T ss_pred             eEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccc----
Confidence            3456789999999999999999999999 99999999976543222 112267888999999875 6788888887    


Q ss_pred             CCeEEEEECCCCCEEEEEE-c-cCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEE----eccCCCcceEEEecC
Q 014977          113 PTKVIIWDDHQSRCIGEFA-F-RSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQI----ETLANLRGLCCLSHH  183 (415)
Q Consensus       113 ~~~i~vwd~~~~~~~~~~~-~-~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~  183 (415)
                       +.|++|++..+....... + ........+.++...++   .++.+++||++.+......    ..+........+...
T Consensus        79 -~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (342)
T d1yfqa_          79 -GEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMD  157 (342)
T ss_dssp             -SCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEE
T ss_pred             -cceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeee
Confidence             999999998887776665 2 23333334444433333   6999999998654333222    222222222222333


Q ss_pred             CCceEEEEeCCccCeEEEEEcCCcc----eEEEecCccceEEEEeC-CCCCEEEEEeCCCcEEEEEECCCCcE------E
Q 014977          184 SSTSVLACPGLQRGQVRIEHFGLNM----IKLINAHDSHIACFTLT-LDGLLLATASTRGTLIRIFNTVDGTR------L  252 (415)
Q Consensus       184 ~~~~~l~~~g~~dg~v~i~~~~~~~----~~~~~~~~~~i~~l~~s-p~g~~l~s~s~dg~~I~vwd~~~~~~------~  252 (415)
                      +.+..++. ++.|+.|++|+.....    ......+...+.+..+. .++..+++++.||. +.+|+......      .
T Consensus       158 ~~~~~~~~-~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~~v~~~~~~~~~~~~~~~  235 (342)
T d1yfqa_         158 TNSSRLIV-GMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR-VAVEFFDDQGDDYNSSKR  235 (342)
T ss_dssp             ECSSEEEE-EESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE-EEEEECCTTCCSTTCTTC
T ss_pred             ccCCceee-ecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCe-EEEEEecCCcceeecccc
Confidence            33345554 6689999999876432    22233444555555554 56789999999999 99998764321      1


Q ss_pred             EEEe-------cCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977          253 QEVR-------RGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       253 ~~~~-------~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                      ..+.       ...|...|++++|+|++++|++|+.||.|+|||++++++.
T Consensus       236 ~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l  286 (342)
T d1yfqa_         236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKI  286 (342)
T ss_dssp             EEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEE
T ss_pred             ceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEE
Confidence            1111       1124557899999999999999999999999999988743

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.95  E-value=1.8e-26  Score=206.59  Aligned_cols=238  Identities=13%  Similarity=0.132  Sum_probs=179.8

Q ss_pred             CCCCCCceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeE-EEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEE
Q 014977           40 SDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETF-RRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII  118 (415)
Q Consensus        40 ~~~h~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~v  118 (415)
                      ..+|...|++++|+|++++++++.|+.+++|+........ ......+...+..+.+++++..++++..      +.+.+
T Consensus        51 ~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~------~~i~~  124 (299)
T d1nr0a2          51 PDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACY------KHIAI  124 (299)
T ss_dssp             SCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEES------SEEEE
T ss_pred             cCCCCCcEEEEEeeccceeecccceeeEEEeccCCcccccccccccccccccccccccccccccccccc------ccccc
Confidence            4579999999999999998887779999999986432111 1111234556778889999887777665      79999


Q ss_pred             EECCCCCEEEEEEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeE-EeccCCCcceEEEecCCCceEEEEeCC
Q 014977          119 WDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQ-IETLANLRGLCCLSHHSSTSVLACPGL  194 (415)
Q Consensus       119 wd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~  194 (415)
                      |+..   ..........+.+++|+|++.+++   .|+.|++||+++++.... ...|..  .+.++.+++++.++++ ++
T Consensus       125 ~~~~---~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~-~~  198 (299)
T d1nr0a2         125 YSHG---KLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPA--EITSVAFSNNGAFLVA-TD  198 (299)
T ss_dssp             EETT---EEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSS--CEEEEEECTTSSEEEE-EE
T ss_pred             cccc---cccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccccccccccc-cc
Confidence            9843   233445667788999999998887   689999999987765443 234554  5566677777778876 66


Q ss_pred             ccCeEEEEEcCCc----ceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEec-CCCcccEEEEEe
Q 014977          195 QRGQVRIEHFGLN----MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR-GVDRAEIYSIAL  269 (415)
Q Consensus       195 ~dg~v~i~~~~~~----~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~-~~~~~~v~~l~~  269 (415)
                      .++.|++|+....    ....+..|...|++++|+|++++|++|+.|+. |++||++++.....+.. ..+...+..+.|
T Consensus       199 ~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~-i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  277 (299)
T d1nr0a2         199 QSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNS-VIVWNMNKPSDHPIIIKGAHAMSSVNSVIW  277 (299)
T ss_dssp             TTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTCTTSCCEEETTSSTTSCEEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccceEEEcCCCE-EEEEECCCCCcceEEEecCCCCCcEEEEEE
Confidence            8999999987543    23445678999999999999999999999999 99999988764433332 223456777765


Q ss_pred             CCCCCEEEEEeCCCeEEEEEce
Q 014977          270 SPNVQWLAVASDKGTVHIFSLR  291 (415)
Q Consensus       270 spdg~~l~s~s~dg~i~vwd~~  291 (415)
                       +++++|++++.|++|++||+.
T Consensus       278 -~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         278 -LNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             -EETTEEEEEETTSCEEEEECC
T ss_pred             -CCCCEEEEEeCCCEEEEEecc
Confidence             567899999999999999984

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4e-25  Score=195.68  Aligned_cols=236  Identities=10%  Similarity=0.196  Sum_probs=178.5

Q ss_pred             ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (415)
Q Consensus        38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i  116 (415)
                      ....+|...|+|++  +|+++||+|+ ||.|+|||+++.+....  +.+|...|.++.|++  .+|++++.|     +.|
T Consensus         9 ~~~~~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~~~~--l~~H~~~V~~v~~~~--~~l~s~s~D-----~~i   77 (293)
T d1p22a2           9 HCRSETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKRI--LTGHTGSVLCLQYDE--RVIITGSSD-----STV   77 (293)
T ss_dssp             ECCCSSCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEEE--ECCCSSCEEEEECCS--SEEEEEETT-----SCE
T ss_pred             eccCCCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCCcEEEE--EecCCCCEeeeeccc--ceeeccccc-----ccc
Confidence            34567889999875  5799999999 99999999998765544  557888899988854  567888887     999


Q ss_pred             EEEECCCCCEEEEEEccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeee---EEeccCCCcceEEEecCCCceEEEE
Q 014977          117 IIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLH---QIETLANLRGLCCLSHHSSTSVLAC  191 (415)
Q Consensus       117 ~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~  191 (415)
                      ++|++..+....................+..+.  .++.+.+|+........   .+..+..  .+..+.+.+.  .+++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~--~~~~  153 (293)
T d1p22a2          78 RVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA--AVNVVDFDDK--YIVS  153 (293)
T ss_dssp             EEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSS--CEEEEEEETT--EEEE
T ss_pred             cccccccccccccccccccccccccccccceeecccccceeEeecccccccccccccccccc--ccccceeccc--cccc
Confidence            999999998887777444433333444444444  78999999997655432   2333443  4445555444  3333


Q ss_pred             eCCccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeC
Q 014977          192 PGLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALS  270 (415)
Q Consensus       192 ~g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~s  270 (415)
                       ++.|+.|++|+... +.+..+.++...+..+.++  +.+|++++.|+. |++||+++.+.+..+..  +...+..  ++
T Consensus       154 -~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~--~~~~v~~--~~  225 (293)
T d1p22a2         154 -ASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNT-IRLWDIECGACLRVLEG--HEELVRC--IR  225 (293)
T ss_dssp             -EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSC-EEEEETTTCCEEEEECC--CSSCEEE--EE
T ss_pred             -ccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCE-EEEEecccceeeeeecc--cceeeee--cc
Confidence             55799999988764 5677888898888888775  568999999999 99999999999988877  6666765  45


Q ss_pred             CCCCEEEEEeCCCeEEEEEceecccC
Q 014977          271 PNVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       271 pdg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                      +++.+|++++.||.|++||+.+....
T Consensus       226 ~~~~~l~sg~~dg~i~iwd~~~~~~~  251 (293)
T d1p22a2         226 FDNKRIVSGAYDGKIKVWDLVAALDP  251 (293)
T ss_dssp             CCSSEEEEEETTSCEEEEEHHHHTST
T ss_pred             ccceEEEEEcCCCEEEEEECCCCccc
Confidence            67889999999999999999887644

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=3.9e-25  Score=201.32  Aligned_cols=238  Identities=13%  Similarity=0.184  Sum_probs=181.1

Q ss_pred             eccCCCeeE-EEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE--eCCeEEEE
Q 014977           82 DLKSGGFRI-VEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV--LEHKIYVY  157 (415)
Q Consensus        82 ~~~~~~~~~-~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~--~d~~i~iw  157 (415)
                      .|++|...+ .++.++  +.+|++|+.|     +.|+|||+.+++++.++. |...|.+++|++++.++.  .|+.|++|
T Consensus         7 tL~GH~~~vitc~~~~--~~~l~tgs~D-----g~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~iw   79 (355)
T d1nexb2           7 TLRGHMTSVITCLQFE--DNYVITGADD-----KMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVW   79 (355)
T ss_dssp             EEECCSSSCEEEEEEE--TTEEEEEETT-----TEEEEEETTTTEEEEEEECCSSCEEEEEEETTTEEEEEETTCCEEEE
T ss_pred             EECCcCCCcEEEEEEC--CCEEEEEeCC-----CeEEEEECCCCcEEEEEECCCCCEEEEEEcCCCEEEEEecccccccc
Confidence            355776654 456665  4578888887     999999999999999998 999999999999887665  79999999


Q ss_pred             EcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC-------------------------------
Q 014977          158 SFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL-------------------------------  206 (415)
Q Consensus       158 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~-------------------------------  206 (415)
                      ++...+..................+.+++.++++ ++.|+.|++|+...                               
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (355)
T d1nexb2          80 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVT-GSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR  158 (355)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEE-EETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEE
T ss_pred             cccccccccccccccccccccccccccccceeee-ecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeee
Confidence            9988877766655444444445555556666654 55677777766432                               


Q ss_pred             ---------------------------------cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEE
Q 014977          207 ---------------------------------NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQ  253 (415)
Q Consensus       207 ---------------------------------~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~  253 (415)
                                                       +.+....++...+.++.++|++.++++++.|+. |++||++++..+.
T Consensus       159 ~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-i~i~d~~~~~~~~  237 (355)
T d1nexb2         159 GHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT-IRIWDLENGELMY  237 (355)
T ss_dssp             CCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSC-EEEEETTTCCEEE
T ss_pred             eccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccce-EEeeecccccccc
Confidence                                             112233456667888999999999999999999 9999999999999


Q ss_pred             EEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCC
Q 014977          254 EVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGS  333 (415)
Q Consensus       254 ~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (415)
                      .+.+  |...|.+++|++  ++|++++.||.|++||+++..+..                                    
T Consensus       238 ~~~~--h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~------------------------------------  277 (355)
T d1nexb2         238 TLQG--HTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKF------------------------------------  277 (355)
T ss_dssp             EECC--CSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEE------------------------------------
T ss_pred             cccc--cccccccccccc--ceeeeeecccccccccccccceec------------------------------------
Confidence            9988  888999999964  789999999999999997665320                                    


Q ss_pred             cccccccccCcccccccceEEEEeCCCceEEEEecCCCEEEEEEeCCcEEEEEEec
Q 014977          334 SLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQNTVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dg~~~~~~~~~  389 (415)
                                          ..+. .....++.+++++.++++++||.|++|++..
T Consensus       278 --------------------~~~~-~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~t  312 (355)
T d1nexb2         278 --------------------SYHH-TNLSAITTFYVSDNILVSGSENQFNIYNLRS  312 (355)
T ss_dssp             --------------------EEEC-TTCCCCCEEEECSSEEEEEETTEEEEEETTT
T ss_pred             --------------------cccc-CCceEEEEEcCCCCEEEEEeCCEEEEEECCC
Confidence                                1111 1222344567778899999999999998753

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.93  E-value=3.8e-25  Score=202.59  Aligned_cols=192  Identities=12%  Similarity=-0.029  Sum_probs=156.0

Q ss_pred             EEEEEeC-CCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCE
Q 014977           48 ISVSWNQ-DYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRC  126 (415)
Q Consensus        48 ~~l~~sp-~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~  126 (415)
                      ..-.||| ||+++|+++.+.|++|+++..... .  + .|...+.++.|+|++..|+.++.+   ....|++||+++++.
T Consensus         6 ~~~~fSP~dG~~~a~~~~g~v~v~d~~~~~~~-~--~-~~~~~v~~~~~spDg~~l~~~~~~---~g~~v~v~d~~~~~~   78 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVL-K--V-PEPLRIRYVRRGGDTKVAFIHGTR---EGDFLGIYDYRTGKA   78 (360)
T ss_dssp             GEEEEEECGGGCEEEEETTEEEEECTTSSBEE-E--C-SCCSCEEEEEECSSSEEEEEEEET---TEEEEEEEETTTCCE
T ss_pred             hcccccCCCCCEEEEEECCeEEEEECCCCcEE-E--c-cCCCCEEEEEECCCCCEEEEEEcC---CCCEEEEEECCCCcE
Confidence            3467999 999999999999999999875432 2  3 577789999999999888765543   114799999999888


Q ss_pred             EEEEEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEe---------CC
Q 014977          127 IGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP---------GL  194 (415)
Q Consensus       127 ~~~~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------g~  194 (415)
                      .....|...|.+++|+|++++++   .++.+++|++.+++....+..+......  +++++++.+|+++         +.
T Consensus        79 ~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~spdg~~la~~~~~~~~~~~~~  156 (360)
T d1k32a3          79 EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITD--FTISDNSRFIAYGFPLKHGETDGY  156 (360)
T ss_dssp             EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCC--EEECTTSCEEEEEEEECSSTTCSC
T ss_pred             EEeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccc--hhhccceeeeeeeccccccceeec
Confidence            77666999999999999999888   6899999999999988888777764444  4555566777753         34


Q ss_pred             ccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC
Q 014977          195 QRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG  249 (415)
Q Consensus       195 ~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~  249 (415)
                      .++.+++|+........+..+...+..++|+|+|++|++++.++. +.+||....
T Consensus       157 ~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~-~~~~d~~~~  210 (360)
T d1k32a3         157 VMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSL-DPSPDRVVL  210 (360)
T ss_dssp             CEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCC-CCEECSSSS
T ss_pred             cccceeeeccccCceeeecccccccccccccCCCCEEEEEeCCCc-eEccccccc
Confidence            566788899988887778888889999999999999999999999 999986543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=8.6e-23  Score=181.34  Aligned_cols=228  Identities=14%  Similarity=0.165  Sum_probs=174.2

Q ss_pred             CCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEE
Q 014977           40 SDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII  118 (415)
Q Consensus        40 ~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~v  118 (415)
                      ..+|...|.++++++++. +++++ |+.+++|++...+      +   ...+..+.+.+++..++.+..      +.+.+
T Consensus        42 ~~~h~~~V~~~~~~~~~~-~~s~s~D~~v~~w~~~~~~------~---~~~~~~~~~~~~~~~~~~~~~------~~~~~  105 (287)
T d1pgua2          42 HQDHSNLIVSLDNSKAQE-YSSISWDDTLKVNGITKHE------F---GSQPKVASANNDGFTAVLTND------DDLLI  105 (287)
T ss_dssp             ECCCCSCEEEEECCSTTC-CEEEETTTEEEETTEEEEE------C---SSCEEEEEECSSSEEEEEETT------SEEEE
T ss_pred             CCCCCCCEEEEEecCCCe-EEEEeeccccccccccccc------c---ccceeeeeeccCCceEEEeec------cccee
Confidence            468999999999998765 56666 9999999976421      1   223456677888888887765      78999


Q ss_pred             EECCCCCEEEEEEccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEec-cCCCcceEEEecCCCceEEEEeCCc
Q 014977          119 WDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIET-LANLRGLCCLSHHSSTSVLACPGLQ  195 (415)
Q Consensus       119 wd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~g~~  195 (415)
                      |+..+++.+..+.+...+.++..+.+...+.  .++.+++|++.+.+....+.. +..  .+.++++++++.+|++ |+.
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~-g~~  182 (287)
T d1pgua2         106 LQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRA--KPSYISISPSETYIAA-GDV  182 (287)
T ss_dssp             EETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSS--CEEEEEECTTSSEEEE-EET
T ss_pred             eeccceeeeeeccccceeeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCC--ceeEEEeccCcccccc-ccc
Confidence            9999999999988777776665554444333  346799999977665554433 333  4566677777888876 678


Q ss_pred             cCeEEEEEcCCcceE--EEecCccceEEEEeCCC----------CCEEEEEeCCCcEEEEEECCCC-cEEEEEecCCCcc
Q 014977          196 RGQVRIEHFGLNMIK--LINAHDSHIACFTLTLD----------GLLLATASTRGTLIRIFNTVDG-TRLQEVRRGVDRA  262 (415)
Q Consensus       196 dg~v~i~~~~~~~~~--~~~~~~~~i~~l~~sp~----------g~~l~s~s~dg~~I~vwd~~~~-~~~~~~~~~~~~~  262 (415)
                      ||.|++|+.......  .+..|...|.+++|+|+          +.+|++|+.|+. |+|||++++ +.+..+.+  |..
T Consensus       183 dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~-i~iw~~~~~~~~~~~~~~--h~~  259 (287)
T d1pgua2         183 MGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN-IFIYSVKRPMKIIKALNA--HKD  259 (287)
T ss_dssp             TSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSC-EEEEESSCTTCCEEETTS--STT
T ss_pred             cccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCe-EEEEECCCCCeEEEEeCC--CCC
Confidence            999999998765433  35689999999999875          468999999999 999999774 45555555  888


Q ss_pred             cEEEEEeCCCCCEEEEEeCCCeEEEEEc
Q 014977          263 EIYSIALSPNVQWLAVASDKGTVHIFSL  290 (415)
Q Consensus       263 ~v~~l~~spdg~~l~s~s~dg~i~vwd~  290 (415)
                      .|++++|+|++ .|++++.|++|++|++
T Consensus       260 ~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         260 GVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             CEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             CeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            99999999986 5889999999999996

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=8.2e-22  Score=178.05  Aligned_cols=238  Identities=16%  Similarity=0.234  Sum_probs=171.3

Q ss_pred             ccCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEe----------------------
Q 014977           38 AFSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEML----------------------   94 (415)
Q Consensus        38 ~~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~----------------------   94 (415)
                      ....+|...|.+++|+|+  +|++|+ |+.+++|+............  ....+....                      
T Consensus        51 ~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~  126 (342)
T d2ovrb2          51 RTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYG--HTSTVRCMHLHEKRVVSGSRDATLRVWDIET  126 (342)
T ss_dssp             EECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECC--CSSCEEEEEEETTEEEEEETTSEEEEEESSS
T ss_pred             EEEeCCCCCEEEEEeCCC--ccccceecccccccccccccceecccc--cceeEeeeecccccccccccceeEEEeeccc
Confidence            345789999999999975  899988 99999999875443322211  111111110                      


Q ss_pred             ----------------eeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE-eCCeEEE
Q 014977           95 ----------------FRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-LEHKIYV  156 (415)
Q Consensus        95 ----------------~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~-~d~~i~i  156 (415)
                                      .......++.++.+     +.|++||....+.+..+. |...+..+.+.+.....+ .|+.|++
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~  201 (342)
T d2ovrb2         127 GQCLHVLMGHVAAVRCVQYDGRRVVSGAYD-----FMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRV  201 (342)
T ss_dssp             CCEEEEEECCSSCEEEEEECSSCEEEEETT-----SCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEE
T ss_pred             ccceeeeecccccceeeccccceeeeecCC-----CeEEEeecccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEE
Confidence                            11112223444444     899999988888887776 666666666544332222 7999999


Q ss_pred             EEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCc-ceEEEec---CccceEEEEeCCCCCEEE
Q 014977          157 YSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN-MIKLINA---HDSHIACFTLTLDGLLLA  232 (415)
Q Consensus       157 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~-~~~~~~~---~~~~i~~l~~sp~g~~l~  232 (415)
                      ||++.++.+..+..|..  .+.+++++++  ++++ |+.|+.|++|+.... ....+..   |...+.++.++  +.+++
T Consensus       202 ~d~~~~~~~~~~~~~~~--~v~~~~~~~~--~l~s-~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  274 (342)
T d2ovrb2         202 WDVETGNCIHTLTGHQS--LTSGMELKDN--ILVS-GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVI  274 (342)
T ss_dssp             EETTTCCEEEEECCCCS--CEEEEEEETT--EEEE-EETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEE
T ss_pred             eecccceeeeEeccccc--ceeEEecCCC--EEEE-EcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeE
Confidence            99999999988888776  4556666654  5655 678999999987654 4444543   45566666665  56899


Q ss_pred             EEeCCCcEEEEEECCCCcEEEEEec---CCCcccEEEEEeCCCCCEEEEEeCCCe----EEEEEcee
Q 014977          233 TASTRGTLIRIFNTVDGTRLQEVRR---GVDRAEIYSIALSPNVQWLAVASDKGT----VHIFSLRV  292 (415)
Q Consensus       233 s~s~dg~~I~vwd~~~~~~~~~~~~---~~~~~~v~~l~~spdg~~l~s~s~dg~----i~vwd~~~  292 (415)
                      +|+.||. |+|||+++++.++.+..   ..|...|++++|+|++.+|++|+.||+    |++||++.
T Consensus       275 s~s~Dg~-i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         275 TSSDDGT-VKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EEETTSE-EEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             EEcCCCE-EEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            9999999 99999999999888753   225668999999999999999999985    99999874

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.91  E-value=6.7e-23  Score=187.43  Aligned_cols=238  Identities=14%  Similarity=0.078  Sum_probs=175.0

Q ss_pred             CCCCCceEEEEEeCCCCEEEEEe-CC--cEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977           41 DVDEIELISVSWNQDYGCFAAGT-SC--GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (415)
Q Consensus        41 ~~h~~~V~~l~~sp~g~~la~g~-d~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~  117 (415)
                      .+|...|.+++|+|||++|++++ +.  .|++|+.++.+..   .+..+...+..+.|+|++..+++++.+     +.++
T Consensus        39 ~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~---~~~~~~~~v~~~~~spdg~~l~~~~~~-----~~~~  110 (360)
T d1k32a3          39 VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE---KFEENLGNVFAMGVDRNGKFAVVANDR-----FEIM  110 (360)
T ss_dssp             CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE---ECCCCCCSEEEEEECTTSSEEEEEETT-----SEEE
T ss_pred             ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE---EeeCCCceEEeeeecccccccceeccc-----cccc
Confidence            46899999999999999998766 43  6899999875432   234788889999999999999998887     9999


Q ss_pred             EEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE-------------eCCeEEEEEcCCceeeeEEeccCCCcceEEEecC
Q 014977          118 IWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-------------LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHH  183 (415)
Q Consensus       118 vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~-------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  183 (415)
                      +|++.+++....+. +...+.+++|+|++++++             .++.+++||+.+++...... +..  ......++
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~-~~~--~~~~~~~s  187 (360)
T d1k32a3         111 TVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATT-ENS--HDYAPAFD  187 (360)
T ss_dssp             EEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSC-SSS--BEEEEEEC
T ss_pred             cccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecc-ccc--cccccccc
Confidence            99999999988887 788899999999999887             14569999998877654433 233  44556677


Q ss_pred             CCceEEEEeCCccCeEEEEEcCCc--------ceE---------------------------------------------
Q 014977          184 SSTSVLACPGLQRGQVRIEHFGLN--------MIK---------------------------------------------  210 (415)
Q Consensus       184 ~~~~~l~~~g~~dg~v~i~~~~~~--------~~~---------------------------------------------  210 (415)
                      ++++.|++ ++.++.+.+|+....        ...                                             
T Consensus       188 pdg~~l~~-~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (360)
T d1k32a3         188 ADSKNLYY-LSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDY  266 (360)
T ss_dssp             TTSCEEEE-EESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCE
T ss_pred             CCCCEEEE-EeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCce
Confidence            77888887 446777777653220        011                                             


Q ss_pred             -EEecCccceEEEEeCCCC---CEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEE
Q 014977          211 -LINAHDSHIACFTLTLDG---LLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVH  286 (415)
Q Consensus       211 -~~~~~~~~i~~l~~sp~g---~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~  286 (415)
                       .+..+...+..+.+.+.+   .++++++.++. |++||+.+++.. .+     .+.|.+++|+|||++|++++.||.|+
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~d~~~~~~~-~~-----~~~v~~~~~SpDG~~l~~~~~Dg~i~  339 (360)
T d1k32a3         267 RMIIPLESSILIYSVPVHGEFAAYYQGAPEKGV-LLKYDVKTRKVT-EV-----KNNLTDLRLSADRKTVMVRKDDGKIY  339 (360)
T ss_dssp             EEEEECSSEEEEEECCCCCSHHHHHHCCCCCEE-EEEEETTTCCEE-EE-----EEEEEEEEECTTSCEEEEEETTSCEE
T ss_pred             eEeeecCCCceEEEEEecCCCeeEEEecCCCCE-EEEEECCCCeEE-Ee-----cCCcCEEEECCCCCEEEEEECCCeEE
Confidence             111111122222222222   23455566777 999999887653 32     33589999999999999999999999


Q ss_pred             EEEceecccCC
Q 014977          287 IFSLRVRVVGE  297 (415)
Q Consensus       287 vwd~~~~~~~~  297 (415)
                      +||+++++...
T Consensus       340 v~d~~~~~~~~  350 (360)
T d1k32a3         340 TFPLEKPEDER  350 (360)
T ss_dssp             EEESSCTTSCE
T ss_pred             EEECCCCCcce
Confidence            99999988654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.90  E-value=8.5e-21  Score=168.85  Aligned_cols=237  Identities=9%  Similarity=0.025  Sum_probs=184.9

Q ss_pred             CceEEEEEeCCCCEEEE-Ee-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeE-EEEecCCCCCCCCCeEEEEEC
Q 014977           45 IELISVSWNQDYGCFAA-GT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNIL-ALVGAGDNSQYPPTKVIIWDD  121 (415)
Q Consensus        45 ~~V~~l~~sp~g~~la~-g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~~~~~~i~vwd~  121 (415)
                      ..+..++|+|||++|++ +. ++.|++||+.+.+......   .......+.+++++. .++++..+     +.+.+|+.
T Consensus        32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  103 (301)
T d1l0qa2          32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP---AGSSPQGVAVSPDGKQVYVTNMAS-----STLSVIDT  103 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE---CSSSEEEEEECTTSSEEEEEETTT-----TEEEEEET
T ss_pred             CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeee---cccccccccccccccccccccccc-----ceeeeccc
Confidence            45789999999998864 44 8999999999877655433   233456788888765 44555555     89999999


Q ss_pred             CCCCEEEEEEccCceeEEEEcCCeEEEE----eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccC
Q 014977          122 HQSRCIGEFAFRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRG  197 (415)
Q Consensus       122 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg  197 (415)
                      .+++....+.+......+.++|++..++    .++.+.+|+..+.+.+..+..+..   ...+.+.+++..+++++...+
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  180 (301)
T d1l0qa2         104 TSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRS---PKGIAVTPDGTKVYVANFDSM  180 (301)
T ss_dssp             TTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSS---EEEEEECTTSSEEEEEETTTT
T ss_pred             ccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCC---ceEEEeeccccceeeeccccc
Confidence            9999999999888899999999998776    578899999999988888766543   445555666666666666667


Q ss_pred             eEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeC---CCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCC
Q 014977          198 QVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATAST---RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQ  274 (415)
Q Consensus       198 ~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~---dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~  274 (415)
                      .+.++................+..+++++++..++.+..   ++. |++||+.+++.+..+..   ...+.+++|+|||+
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~-v~v~D~~t~~~~~~~~~---~~~~~~va~spdg~  256 (301)
T d1l0qa2         181 SISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNT-VSMIDTGTNKITARIPV---GPDPAGIAVTPDGK  256 (301)
T ss_dssp             EEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCE-EEEEETTTTEEEEEEEC---CSSEEEEEECTTSS
T ss_pred             ccccccccceeeeecccccCCcceeeccccccccccccccceeee-eeeeecCCCeEEEEEcC---CCCEEEEEEeCCCC
Confidence            777777776666555556667788999999998776543   467 99999999999888875   34589999999999


Q ss_pred             EE-EEEeCCCeEEEEEceecccC
Q 014977          275 WL-AVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       275 ~l-~s~s~dg~i~vwd~~~~~~~  296 (415)
                      +| ++++.|++|++||+++++..
T Consensus       257 ~l~va~~~~~~i~v~D~~t~~~~  279 (301)
T d1l0qa2         257 KVYVALSFCNTVSVIDTATNTIT  279 (301)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEE
T ss_pred             EEEEEECCCCeEEEEECCCCeEE
Confidence            87 56778999999999998754

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.7e-21  Score=170.66  Aligned_cols=228  Identities=14%  Similarity=0.296  Sum_probs=170.8

Q ss_pred             cCCCCCCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977           39 FSDVDEIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (415)
Q Consensus        39 ~~~~h~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~  117 (415)
                      ...+|.+.|++++|  ++++|++|+ |+.|++|++..........  ............ .. .++++..+     +.+.
T Consensus        50 ~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~-~~~~~~~~-----~~~~  118 (293)
T d1p22a2          50 ILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLI--HHCEAVLHLRFN-NG-MMVTCSKD-----RSIA  118 (293)
T ss_dssp             EECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEEC--CCCSCEEEEECC-TT-EEEEEETT-----SCEE
T ss_pred             EEecCCCCEeeeec--ccceeeccccccccccccccccccccccc--cccccccccccc-cc-ceeecccc-----ccee
Confidence            45789999999887  577999999 9999999998866554433  233333332222 22 33444444     9999


Q ss_pred             EEECCCCCEEEE---EE-ccCceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEe
Q 014977          118 IWDDHQSRCIGE---FA-FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP  192 (415)
Q Consensus       118 vwd~~~~~~~~~---~~-~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  192 (415)
                      +|+.........   +. |...+..+.+.++..... .|+.|++||+.+++.+..+..+..  .+..+.+++.  .+++ 
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~--~v~~~~~~~~--~l~~-  193 (293)
T d1p22a2         119 VWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKR--GIACLQYRDR--LVVS-  193 (293)
T ss_dssp             EEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEEETT--EEEE-
T ss_pred             EeeccccccccccccccccccccccceecccccccccCCCceeeecCCCCcEEEEEccccc--ccccccCCCC--eEEE-
Confidence            999877654332   22 678888888888877666 799999999999999988887766  4455555543  4554 


Q ss_pred             CCccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCC---------CcEEEEEecCCCcc
Q 014977          193 GLQRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVD---------GTRLQEVRRGVDRA  262 (415)
Q Consensus       193 g~~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~---------~~~~~~~~~~~~~~  262 (415)
                      ++.|+.|++|+... ..+....+|...+..  +++++.+|++++.||. |++||+..         ...+..+.+  |.+
T Consensus       194 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~--H~~  268 (293)
T d1p22a2         194 GSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYDGK-IKVWDLVAALDPRAPAGTLCLRTLVE--HSG  268 (293)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEETTSC-EEEEEHHHHTSTTSCTTTTEEEEECC--CSS
T ss_pred             ecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEEcCCCE-EEEEECCCCccccccCCceeeEEecC--CCC
Confidence            66899999988765 456667777777765  4567889999999999 99999743         346777877  888


Q ss_pred             cEEEEEeCCCCCEEEEEeCCCeEEEEE
Q 014977          263 EIYSIALSPNVQWLAVASDKGTVHIFS  289 (415)
Q Consensus       263 ~v~~l~~spdg~~l~s~s~dg~i~vwd  289 (415)
                      .|++++|+  +.+|++++.||+|+|||
T Consensus       269 ~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         269 RVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             CCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             CEEEEEEc--CCEEEEEecCCEEEEeC
Confidence            99999994  57899999999999997

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=1.1e-21  Score=182.52  Aligned_cols=253  Identities=14%  Similarity=0.126  Sum_probs=163.6

Q ss_pred             cCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCC-------EEEEEEccCceeEEE------EcC-CeEEEE
Q 014977           84 KSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR-------CIGEFAFRSDVRSVK------LSR-DRIVVV  149 (415)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~-------~~~~~~~~~~i~~l~------~~~-~~~~~~  149 (415)
                      ++|...|.++++.++  ++++++.|     +.|++||..+..       ......+...+..+.      ... ++.+++
T Consensus        11 ~~H~~~I~~v~~~~~--~l~S~S~D-----~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (393)
T d1sq9a_          11 KAHDADIFSVSACNS--FTVSCSGD-----GYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA   83 (393)
T ss_dssp             SCSSSCEEEEEECSS--EEEEEETT-----SEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             CcccCccEEEEEeCC--EEEEEECC-----CeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEE
Confidence            578888999988764  56777777     999999976543       233333444333222      222 223333


Q ss_pred             ---eCCeEEEEEcCCceeeeEEe----------ccCCCcceEEEecCCC---ceEEEEeCCccCeEEEEEcCCc------
Q 014977          150 ---LEHKIYVYSFVDLKLLHQIE----------TLANLRGLCCLSHHSS---TSVLACPGLQRGQVRIEHFGLN------  207 (415)
Q Consensus       150 ---~d~~i~iwd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~---~~~l~~~g~~dg~v~i~~~~~~------  207 (415)
                         .|+.|++|++........+.          .+......+++.+.+.   +.++++ ++.||.+++|+....      
T Consensus        84 s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dg~i~vw~~~~~~~~~~~  162 (393)
T d1sq9a_          84 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVA-TDVKGTTYIWKFHPFADESNS  162 (393)
T ss_dssp             EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEE-EETTSCEEEEEEESSSSHHHH
T ss_pred             EEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEE-EcCCCcEEEEEeecCCcccce
Confidence               49999999985432211111          1122223444544432   345555 558999999886421      


Q ss_pred             ------c-------eEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecC----CCcccEEEEEeC
Q 014977          208 ------M-------IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRG----VDRAEIYSIALS  270 (415)
Q Consensus       208 ------~-------~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~----~~~~~v~~l~~s  270 (415)
                            .       ......+...+.+++|+|++ +|++|+.|+. |+|||+.+++.+..+...    .|..+|.+++|+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~-i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  240 (393)
T d1sq9a_         163 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGT-VQISELSTLRPLYNFESQHSMINNSNSIRSVKFS  240 (393)
T ss_dssp             TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSE-EEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred             eeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCc-EEEEeecccccccccccccccccccceEEEcccc
Confidence                  0       11112345668899999998 8999999999 999999999988766532    267899999999


Q ss_pred             CCCCEEEEEeCCC---eEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccc
Q 014977          271 PNVQWLAVASDKG---TVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFS  347 (415)
Q Consensus       271 pdg~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (415)
                      |||++|++|+.|+   .|++||+++++....+.....                                           
T Consensus       241 pdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~-------------------------------------------  277 (393)
T d1sq9a_         241 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTH-------------------------------------------  277 (393)
T ss_dssp             SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC---------------------------------------------
T ss_pred             cccceeeeecCCCCcceeeecccccceeeeeeccccc-------------------------------------------
Confidence            9999999999987   499999998875432111100                                           


Q ss_pred             cccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977          348 SEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~  389 (415)
                      .......+.-+...+..++|+|+ +.|++++.||.|++|++..
T Consensus       278 ~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~  320 (393)
T d1sq9a_         278 SSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT  320 (393)
T ss_dssp             ------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred             cccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCC
Confidence            00000001112245778999998 7788888899999999865

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.88  E-value=1.7e-19  Score=160.31  Aligned_cols=258  Identities=15%  Similarity=0.069  Sum_probs=193.4

Q ss_pred             EEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEE-EecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeE
Q 014977           61 AGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILAL-VGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRS  138 (415)
Q Consensus        61 ~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~  138 (415)
                      ++. ++.|.|||+++.+.+....+   ......+.++|++..+ +++..+     +.|++||+.+++.+..+.....+..
T Consensus         7 ~~~~~~~v~v~D~~t~~~~~~i~~---g~~p~~va~spdG~~l~v~~~~~-----~~i~v~d~~t~~~~~~~~~~~~~~~   78 (301)
T d1l0qa2           7 ANSESDNISVIDVTSNKVTATIPV---GSNPMGAVISPDGTKVYVANAHS-----NDVSIIDTATNNVIATVPAGSSPQG   78 (301)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEEC---SSSEEEEEECTTSSEEEEEEGGG-----TEEEEEETTTTEEEEEEECSSSEEE
T ss_pred             EECCCCEEEEEECCCCeEEEEEEC---CCCceEEEEeCCCCEEEEEECCC-----CEEEEEECCCCceeeeeeccccccc
Confidence            444 89999999998765554443   2346788999998654 566655     8999999999999999987677899


Q ss_pred             EEEcCCeEEEE----eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEec
Q 014977          139 VKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINA  214 (415)
Q Consensus       139 l~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~  214 (415)
                      +.+++++..++    .++.+.+|+..+++....+..+.   ....+.+++++..++.++..++.+.+|+...........
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (301)
T d1l0qa2          79 VAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK---SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS  155 (301)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             cccccccccccccccccceeeecccccceeeeeccccc---cceEEEeecCCCeeeeeeccccceeeeeccccceeeecc
Confidence            99999987665    57899999999998888887655   345566666777777777788889988776655444444


Q ss_pred             CccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeC---CCeEEEEEce
Q 014977          215 HDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASD---KGTVHIFSLR  291 (415)
Q Consensus       215 ~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~---dg~i~vwd~~  291 (415)
                      +...+..++++|++..+++++.+...+.+|+....+....+..   ...+..++|++++..++++..   ++.|++||+.
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~  232 (301)
T d1l0qa2         156 VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV---EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTG  232 (301)
T ss_dssp             CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC---SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETT
T ss_pred             cCCCceEEEeeccccceeeecccccccccccccceeeeecccc---cCCcceeeccccccccccccccceeeeeeeeecC
Confidence            5566789999999998888887655388888877777766664   346788999999998876543   4689999998


Q ss_pred             ecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC-
Q 014977          292 VRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-  370 (415)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  370 (415)
                      +++..                                                        .++... .....++|+|+ 
T Consensus       233 t~~~~--------------------------------------------------------~~~~~~-~~~~~va~spdg  255 (301)
T d1l0qa2         233 TNKIT--------------------------------------------------------ARIPVG-PDPAGIAVTPDG  255 (301)
T ss_dssp             TTEEE--------------------------------------------------------EEEECC-SSEEEEEECTTS
T ss_pred             CCeEE--------------------------------------------------------EEEcCC-CCEEEEEEeCCC
Confidence            87642                                                        123332 23456899999 


Q ss_pred             CEEEEEEe-CCcEEEEEEec
Q 014977          371 NTVVIVSM-DGSFYRCSFDP  389 (415)
Q Consensus       371 ~~i~~~~~-dg~~~~~~~~~  389 (415)
                      +.|++++. +|.|++|.+..
T Consensus       256 ~~l~va~~~~~~i~v~D~~t  275 (301)
T d1l0qa2         256 KKVYVALSFCNTVSVIDTAT  275 (301)
T ss_dssp             SEEEEEETTTTEEEEEETTT
T ss_pred             CEEEEEECCCCeEEEEECCC
Confidence            55766665 79999997753

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.87  E-value=1.1e-20  Score=177.69  Aligned_cols=246  Identities=8%  Similarity=-0.043  Sum_probs=172.5

Q ss_pred             CceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEec---cCCCeeEEEEeeeCCeEEE-EecCCCCCCCCCeEEEE
Q 014977           45 IELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDL---KSGGFRIVEMLFRCNILAL-VGAGDNSQYPPTKVIIW  119 (415)
Q Consensus        45 ~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l-~s~~~d~~~~~~~i~vw  119 (415)
                      ..+..++|+|||++|++++ |+.+++||+++.+......+   ..+...+.++.|+|++..+ +++..+     +.+++|
T Consensus        62 ~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~-----~~v~i~  136 (426)
T d1hzua2          62 YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWP-----PQFAIM  136 (426)
T ss_dssp             SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEES-----SEEEEE
T ss_pred             CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCC-----CeEEEE
Confidence            4699999999999999999 99999999998765443332   2334455667788888765 444454     899999


Q ss_pred             ECCCCCEEEEEE--------------------------------------------------------ccCceeEEEEcC
Q 014977          120 DDHQSRCIGEFA--------------------------------------------------------FRSDVRSVKLSR  143 (415)
Q Consensus       120 d~~~~~~~~~~~--------------------------------------------------------~~~~i~~l~~~~  143 (415)
                      |..+++++..+.                                                        +...+..+.++|
T Consensus       137 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (426)
T d1hzua2         137 DGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDS  216 (426)
T ss_dssp             ETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECT
T ss_pred             cCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECC
Confidence            988776654432                                                        112234566666


Q ss_pred             CeEEEE----eCCeEEEEEcCCceeeeEEeccCC--CcceEEEecCCCceEEEEeCCccCeEEEEEcCC--------cce
Q 014977          144 DRIVVV----LEHKIYVYSFVDLKLLHQIETLAN--LRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL--------NMI  209 (415)
Q Consensus       144 ~~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~--------~~~  209 (415)
                      +++++.    .+..+.+++..+++.+..+.....  ......+.....+...+.....++.+.++....        +..
T Consensus       217 ~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~  296 (426)
T d1hzua2         217 SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKV  296 (426)
T ss_dssp             TSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEE
T ss_pred             CCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEe
Confidence            665554    356677777777777666543322  223334444444555555566788887765432        567


Q ss_pred             EEEecCccceEEEEeCCCCCEEEE-------EeCCCcEEEEEECCCCcEEEEEec-------CCCcccEEEEEeCCCCCE
Q 014977          210 KLINAHDSHIACFTLTLDGLLLAT-------ASTRGTLIRIFNTVDGTRLQEVRR-------GVDRAEIYSIALSPNVQW  275 (415)
Q Consensus       210 ~~~~~~~~~i~~l~~sp~g~~l~s-------~s~dg~~I~vwd~~~~~~~~~~~~-------~~~~~~v~~l~~spdg~~  275 (415)
                      ..+.+|...+..++|+|+|++|++       ++.+++ |+|||+.+++...++..       ..+...|.+++|||||++
T Consensus       297 ~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~t-v~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~  375 (426)
T d1hzua2         297 AELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQS-VAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDE  375 (426)
T ss_dssp             EEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTC-EEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSE
T ss_pred             EEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCE-EEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCE
Confidence            788999999999999999999995       456788 99999999987666532       124457999999999997


Q ss_pred             EEEE-----eCCCeEEEEEceecccC
Q 014977          276 LAVA-----SDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       276 l~s~-----s~dg~i~vwd~~~~~~~  296 (415)
                      |+.+     +.+|.|+|||.++.+..
T Consensus       376 i~vs~~~~~~~~~~i~v~D~~T~k~~  401 (426)
T d1hzua2         376 VWFSVWNGKNDSSALVVVDDKTLKLK  401 (426)
T ss_dssp             EEEEECCCTTSCCEEEEEETTTTEEE
T ss_pred             EEEEEecCCCCCCeEEEEECCCCeEE
Confidence            7543     35789999999998754

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=5.1e-22  Score=179.05  Aligned_cols=239  Identities=9%  Similarity=-0.023  Sum_probs=159.0

Q ss_pred             CCCCCceEEEEEeCCC-CEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEE
Q 014977           41 DVDEIELISVSWNQDY-GCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVII  118 (415)
Q Consensus        41 ~~h~~~V~~l~~sp~g-~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~v  118 (415)
                      .+|..+|.+++|+|++ .+|++|+ |+.|++|++........... .+........+.++...+++++.+     +.+++
T Consensus        53 ~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~  126 (342)
T d1yfqa_          53 LRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTN-NEANLGICRICKYGDDKLIAASWD-----GLIEV  126 (342)
T ss_dssp             EECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBS-CCCCSCEEEEEEETTTEEEEEETT-----SEEEE
T ss_pred             cCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccccccc-cccccccccccccccccccccccc-----cccce
Confidence            4699999999999875 5788888 99999999987665544333 233333333344444555666665     99999


Q ss_pred             EECCCCCEEEEEE-------ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEecc-CCCcceEEEec-CCCc
Q 014977          119 WDDHQSRCIGEFA-------FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETL-ANLRGLCCLSH-HSST  186 (415)
Q Consensus       119 wd~~~~~~~~~~~-------~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~  186 (415)
                      ||++++.......       .......+.+.+.+..++   .|+.|++||+...+........ ........... ..++
T Consensus       127 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (342)
T d1yfqa_         127 IDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQ  206 (342)
T ss_dssp             ECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGG
T ss_pred             eeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCC
Confidence            9976543322221       122334445555444444   7999999999776544332211 11112222222 2233


Q ss_pred             eEEEEeCCccCeEEEEEcCCcc-------eE---------EEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCc
Q 014977          187 SVLACPGLQRGQVRIEHFGLNM-------IK---------LINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT  250 (415)
Q Consensus       187 ~~l~~~g~~dg~v~i~~~~~~~-------~~---------~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~  250 (415)
                      ..+++ ++.||.+.+|......       ..         ....|...+++++|+|++.+|++|+.||. |+|||+++++
T Consensus       207 ~~~~~-~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~-v~vWD~~~~~  284 (342)
T d1yfqa_         207 EGYAC-SSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI-ISCWNLQTRK  284 (342)
T ss_dssp             CEEEE-EETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSC-EEEEETTTTE
T ss_pred             CEEEe-ecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCE-EEEEECCCCc
Confidence            44444 6689999997765311       11         12346678999999999999999999999 9999999999


Q ss_pred             EEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEc
Q 014977          251 RLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSL  290 (415)
Q Consensus       251 ~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~  290 (415)
                      .+..+... +  .+..++|+|++++|++++.|+++++|..
T Consensus       285 ~l~~~~~~-~--~~~~~~~s~~~~~l~~a~sdd~~~~~~~  321 (342)
T d1yfqa_         285 KIKNFAKF-N--EDSVVKIACSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             EEEECCCC-S--SSEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred             EEEEecCC-C--CCEEEEEEeCCCEEEEEEcCCcEEEeee
Confidence            99887642 3  3455778889999999999998887754

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.85  E-value=1.6e-19  Score=169.74  Aligned_cols=229  Identities=11%  Similarity=0.024  Sum_probs=157.1

Q ss_pred             EEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEE--EE---
Q 014977           58 CFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGE--FA---  131 (415)
Q Consensus        58 ~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~--~~---  131 (415)
                      ++++.. ||.|+|||+.+++.+....  .+ ..+..+.|+||+..+++++.|     +.|++||+.+++....  +.   
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~--~g-~~~~~vafSPDGk~l~~~~~d-----~~v~vwd~~t~~~~~~~~i~~~~  105 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVID--TG-YAVHISRMSASGRYLLVIGRD-----ARIDMIDLWAKEPTKVAEIKIGI  105 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEE--CC-SSEEEEEECTTSCEEEEEETT-----SEEEEEETTSSSCEEEEEEECCS
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEe--CC-CCeeEEEECCCCCEEEEEeCC-----CCEEEEEccCCceeEEEEEeCCC
Confidence            445666 9999999999977665543  33 457889999999999988887     9999999999875443  33   


Q ss_pred             -ccCceeEEEEcCCeEEEE----eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCC---------ceEEEEeCCccC
Q 014977          132 -FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSS---------TSVLACPGLQRG  197 (415)
Q Consensus       132 -~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~~g~~dg  197 (415)
                       |...+.++.|+|||++++    .++.+.+||..+++.+..+..+...+....+.+.+.         +..++.+....+
T Consensus       106 ~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~  185 (426)
T d1hzua2         106 EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETG  185 (426)
T ss_dssp             EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred             CCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCC
Confidence             344455667778998765    689999999999988887776554433333443333         333333222333


Q ss_pred             eEEEEEcCC-c-ceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEE-----------------------
Q 014977          198 QVRIEHFGL-N-MIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRL-----------------------  252 (415)
Q Consensus       198 ~v~i~~~~~-~-~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~-----------------------  252 (415)
                      .+.++.... . .......+...+..+.|+|++++++++..+...+.+++..+++.+                       
T Consensus       186 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (426)
T d1hzua2         186 KVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYG  265 (426)
T ss_dssp             EEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTE
T ss_pred             eEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCC
Confidence            443322221 1 122334567778899999999988877655443677766554332                       


Q ss_pred             -------------------------------EEEecCCCcccEEEEEeCCCCCEEEE-------EeCCCeEEEEEceecc
Q 014977          253 -------------------------------QEVRRGVDRAEIYSIALSPNVQWLAV-------ASDKGTVHIFSLRVRV  294 (415)
Q Consensus       253 -------------------------------~~~~~~~~~~~v~~l~~spdg~~l~s-------~s~dg~i~vwd~~~~~  294 (415)
                                                     ..+.+  |...+..++|+||+++|++       ++.|++|+|||+++++
T Consensus       266 ~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g--~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~  343 (426)
T d1hzua2         266 PVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQG--QGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD  343 (426)
T ss_dssp             EEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEEC--SSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred             ceEEeccCCCceEEEeeccccccccccceEeEEEec--CCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCC
Confidence                                           33333  4556788999999999995       4567899999999988


Q ss_pred             cC
Q 014977          295 VG  296 (415)
Q Consensus       295 ~~  296 (415)
                      ..
T Consensus       344 ~~  345 (426)
T d1hzua2         344 AK  345 (426)
T ss_dssp             SC
T ss_pred             cC
Confidence            54

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.84  E-value=4e-19  Score=160.24  Aligned_cols=224  Identities=10%  Similarity=0.065  Sum_probs=166.2

Q ss_pred             CEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEE-EecCCCCCCCCCeEEEEECCCCCEEEEEEc--
Q 014977           57 GCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILAL-VGAGDNSQYPPTKVIIWDDHQSRCIGEFAF--  132 (415)
Q Consensus        57 ~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~--  132 (415)
                      ++|++++ |+.|+|||+++.+.+.......+...+..+.++|++..+ +++..+     +.|.+||+.+++.+..+..  
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~-----~~v~v~D~~t~~~~~~~~~~~   76 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKS-----ESLVKIDLVTGETLGRIDLST   76 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTT-----TEEEEEETTTCCEEEEEECCB
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCC-----CeEEEEECCCCcEEEEEecCC
Confidence            4788888 999999999998776666554555667788999998655 566666     9999999999999988862  


Q ss_pred             ----cCceeEEEEcCCeEEEE---------------eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeC
Q 014977          133 ----RSDVRSVKLSRDRIVVV---------------LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG  193 (415)
Q Consensus       133 ----~~~i~~l~~~~~~~~~~---------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  193 (415)
                          ...+..++|+|++..++               .+..+.+||..+++....+..+..   ...+.+++++.++++.+
T Consensus        77 ~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~s~dg~~l~~~~  153 (337)
T d1pbyb_          77 PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQ---ITMLAWARDGSKLYGLG  153 (337)
T ss_dssp             TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSS---CCCEEECTTSSCEEEES
T ss_pred             CcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCC---ceEEEEcCCCCEEEEEc
Confidence                23456789999988775               256899999999998888875543   23344555666666533


Q ss_pred             CccCeEEEEEcCC-----------------------------------------------------------------cc
Q 014977          194 LQRGQVRIEHFGL-----------------------------------------------------------------NM  208 (415)
Q Consensus       194 ~~dg~v~i~~~~~-----------------------------------------------------------------~~  208 (415)
                       .+  +.+|+...                                                                 ..
T Consensus       154 -~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (337)
T d1pbyb_         154 -RD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE  230 (337)
T ss_dssp             -SS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC
T ss_pred             -CC--cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCc
Confidence             22  33333211                                                                 00


Q ss_pred             --eEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEE
Q 014977          209 --IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVH  286 (415)
Q Consensus       209 --~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~  286 (415)
                        ...+..+...+..+.++|++.+++.+.  +. |++||+.+++.+..+.   +...+.+++|+|||++|++++.|++|+
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-i~v~d~~~~~~~~~~~---~~~~~~~~~~s~dG~~l~v~~~~~~i~  304 (337)
T d1pbyb_         231 MAMREVRIMDVFYFSTAVNPAKTRAFGAY--NV-LESFDLEKNASIKRVP---LPHSYYSVNVSTDGSTVWLGGALGDLA  304 (337)
T ss_dssp             EEEEEEEECSSCEEEEEECTTSSEEEEEE--SE-EEEEETTTTEEEEEEE---CSSCCCEEEECTTSCEEEEESBSSEEE
T ss_pred             EEEEEecCCCcceEEEEecccceEEEEcc--cc-EEEEECCCCcEEEEEc---CCCCEEEEEECCCCCEEEEEeCCCcEE
Confidence              111223455566778888988887664  67 9999999999998887   445788999999999999999999999


Q ss_pred             EEEceecccCC
Q 014977          287 IFSLRVRVVGE  297 (415)
Q Consensus       287 vwd~~~~~~~~  297 (415)
                      |||+++.+...
T Consensus       305 v~D~~t~~~v~  315 (337)
T d1pbyb_         305 AYDAETLEKKG  315 (337)
T ss_dssp             EEETTTCCEEE
T ss_pred             EEECCCCcEEE
Confidence            99999987653

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.84  E-value=1e-19  Score=164.87  Aligned_cols=236  Identities=8%  Similarity=-0.035  Sum_probs=162.6

Q ss_pred             EEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEE-EecCCCCCCCCCeEEEEECCCCCEE
Q 014977           50 VSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILAL-VGAGDNSQYPPTKVIIWDDHQSRCI  127 (415)
Q Consensus        50 l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~~~~~~i~vwd~~~~~~~  127 (415)
                      ++|++++++|++++ ++.|.|||+++.+......+ .+......+.|+||+..+ +++..+     +.|.+||+.+++.+
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~-~~~~~p~~l~~spDG~~l~v~~~~~-----~~v~~~d~~t~~~~   75 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM-PDKFGPGTAMMAPDNRTAYVLNNHY-----GDIYGIDLDTCKNT   75 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC-SSCCSSCEEEECTTSSEEEEEETTT-----TEEEEEETTTTEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEc-CCCCCcceEEECCCCCEEEEEECCC-----CcEEEEeCccCeee
Confidence            47899999999999 99999999998766555444 344556788899998654 666666     99999999999998


Q ss_pred             EEEEcc-------CceeEEEEcCCeEEEE---------------eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCC
Q 014977          128 GEFAFR-------SDVRSVKLSRDRIVVV---------------LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSS  185 (415)
Q Consensus       128 ~~~~~~-------~~i~~l~~~~~~~~~~---------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (415)
                      ..+...       ..+..++|+|||+.+.               .+..+.+|+..+++....+..+..+.....+...++
T Consensus        76 ~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (346)
T d1jmxb_          76 FHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADD  155 (346)
T ss_dssp             EEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTT
T ss_pred             eeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCC
Confidence            887622       3466889999987665               267788999877655443322211111111111111


Q ss_pred             ceEEEE--------------------------------------eCCccC-------------------------eEEEE
Q 014977          186 TSVLAC--------------------------------------PGLQRG-------------------------QVRIE  202 (415)
Q Consensus       186 ~~~l~~--------------------------------------~g~~dg-------------------------~v~i~  202 (415)
                      +.+++.                                      .+..++                         .+.+|
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (346)
T d1jmxb_         156 GSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV  235 (346)
T ss_dssp             SCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEE
T ss_pred             CEEEEeCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEE
Confidence            111111                                      111111                         22223


Q ss_pred             EcCCcc--eEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEe
Q 014977          203 HFGLNM--IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVAS  280 (415)
Q Consensus       203 ~~~~~~--~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s  280 (415)
                      +.....  ......|...+..+.+++++.+++.... +. |.+||..+++.+..+..   ...+.+++|+|||++|++++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-v~v~d~~~~~~~~~~~~---~~~~~~va~s~DG~~l~v~~  310 (346)
T d1jmxb_         236 DLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NR-LAKYDLKQRKLIKAANL---DHTYYCVAFDKKGDKLYLGG  310 (346)
T ss_dssp             ETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SE-EEEEETTTTEEEEEEEC---SSCCCEEEECSSSSCEEEES
T ss_pred             ECCCCceEEEEeecccceeEEEEEeCCCCEEEEecC-Ce-EEEEECCCCcEEEEEcC---CCCEEEEEEcCCCCEEEEEe
Confidence            322221  2223456777888889998888777664 56 99999999999888874   34689999999999999999


Q ss_pred             CCCeEEEEEceecccC
Q 014977          281 DKGTVHIFSLRVRVVG  296 (415)
Q Consensus       281 ~dg~i~vwd~~~~~~~  296 (415)
                      .|+.|+|||+++++..
T Consensus       311 ~d~~v~v~D~~t~~~i  326 (346)
T d1jmxb_         311 TFNDLAVFNPDTLEKV  326 (346)
T ss_dssp             BSSEEEEEETTTTEEE
T ss_pred             CCCcEEEEECccCCEE
Confidence            9999999999998865

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.79  E-value=2.2e-18  Score=161.97  Aligned_cols=236  Identities=12%  Similarity=-0.007  Sum_probs=158.9

Q ss_pred             CceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEec---cCCCeeEEEEeeeCCeEEE-EecCCCCCCCCCeEEEE
Q 014977           45 IELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDL---KSGGFRIVEMLFRCNILAL-VGAGDNSQYPPTKVIIW  119 (415)
Q Consensus        45 ~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l-~s~~~d~~~~~~~i~vw  119 (415)
                      ..+..++|+|||++|++++ |+.+++||+.+.+......+   ..+...+....|++|+..+ +++..+     +.|++|
T Consensus        62 ~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~-----~~v~i~  136 (432)
T d1qksa2          62 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWP-----PQYVIM  136 (432)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEET-----TEEEEE
T ss_pred             CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCC-----CeEEEE
Confidence            4699999999999999998 99999999987664433332   1233444556778888754 666666     999999


Q ss_pred             ECCCCCEEEEEE------------ccCceeEEEEcCCeEEEE----eCCeEEEEEcCCceeeeEEeccCCCcceEEEecC
Q 014977          120 DDHQSRCIGEFA------------FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHH  183 (415)
Q Consensus       120 d~~~~~~~~~~~------------~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  183 (415)
                      |..+++.+..+.            +......+.+++++..++    .++.|.+||..+.+.......+.. .....+.++
T Consensus       137 d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g-~~~~~~~~s  215 (432)
T d1qksa2         137 DGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAE-RFLHDGGLD  215 (432)
T ss_dssp             ETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECC-SSEEEEEEC
T ss_pred             eCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEccc-CccccceEC
Confidence            999999988764            234566788999887655    578999999988765544332221 145667777


Q ss_pred             CCceEEEEeCCccCeEEEEEcCCcceEEE-e-----cCccceEEEEeCCCCCEEEEEe-CCCcEEEEEECCCCcEEEEEe
Q 014977          184 SSTSVLACPGLQRGQVRIEHFGLNMIKLI-N-----AHDSHIACFTLTLDGLLLATAS-TRGTLIRIFNTVDGTRLQEVR  256 (415)
Q Consensus       184 ~~~~~l~~~g~~dg~v~i~~~~~~~~~~~-~-----~~~~~i~~l~~sp~g~~l~s~s-~dg~~I~vwd~~~~~~~~~~~  256 (415)
                      |+++++++++..++.+.+++......... .     .|........+...+...++.. .++. |.+|+......    .
T Consensus       216 pdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~-v~~~~~~~~~~----~  290 (432)
T d1qksa2         216 GSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDS-VALIGTDPEGH----P  290 (432)
T ss_dssp             TTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSE-EEEEECCTTTC----T
T ss_pred             CCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCce-EEecccccccc----c
Confidence            88888777666777888877665443332 2     1333344455555555555443 3667 88888765532    1


Q ss_pred             cCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceec
Q 014977          257 RGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR  293 (415)
Q Consensus       257 ~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~  293 (415)
                      .  +...+....++|++..+++++.+++.++|...+.
T Consensus       291 ~--~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~  325 (432)
T d1qksa2         291 D--NAWKILDSFPALGGGSLFIKTHPNSQYLYVDATL  325 (432)
T ss_dssp             T--TBTSEEEEEECSCSCCCCEECCTTCSEEEEECTT
T ss_pred             c--cccEEEEEEEcCCCCeEEEEecCCccceeecccC
Confidence            2  4445666777777777777777777777765543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.74  E-value=1.1e-15  Score=143.30  Aligned_cols=229  Identities=10%  Similarity=0.019  Sum_probs=162.8

Q ss_pred             EEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCC--EEEEEE---
Q 014977           58 CFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR--CIGEFA---  131 (415)
Q Consensus        58 ~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~--~~~~~~---  131 (415)
                      ++++.+ +|.|.|||.++.+.+....  .+ ..+..+.|+||+.++++++.|     +.|++||+.+++  .+.++.   
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~~--~g-~~~~~v~fSpDG~~l~~~s~d-----g~v~~~d~~t~~~~~~~~i~~~~  105 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVLD--TG-YAVHISRLSASGRYLFVIGRD-----GKVNMIDLWMKEPTTVAEIKIGS  105 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEE--CS-SCEEEEEECTTSCEEEEEETT-----SEEEEEETTSSSCCEEEEEECCS
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEe--CC-CCeeEEEECCCCCEEEEEcCC-----CCEEEEEeeCCCceEEEEEecCC
Confidence            346666 9999999999987766544  33 358899999999999998887     999999998876  444554   


Q ss_pred             -ccCceeEEEEcCCeEEEE----eCCeEEEEEcCCceeeeEEeccCCCc---------ceEEEecCCCceEEEEeCCccC
Q 014977          132 -FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLR---------GLCCLSHHSSTSVLACPGLQRG  197 (415)
Q Consensus       132 -~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~g~~dg  197 (415)
                       +...+.+..|+|||++++    .++.|++||..+++.+..+..+....         ....+..++++..++++...++
T Consensus       106 ~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~  185 (432)
T d1qksa2         106 EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETG  185 (432)
T ss_dssp             EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred             CCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCC
Confidence             334455556778998764    68999999999999888776543221         2334555666666666677788


Q ss_pred             eEEEEEcCC-cceEEEe-cCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCC---CcccEEEEEeCCC
Q 014977          198 QVRIEHFGL-NMIKLIN-AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGV---DRAEIYSIALSPN  272 (415)
Q Consensus       198 ~v~i~~~~~-~~~~~~~-~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~---~~~~v~~l~~spd  272 (415)
                      .|.+++... +...... .+...+..++|+|+|+++++++.++..+.++|..+++.+..+..+.   +........+...
T Consensus       186 ~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  265 (432)
T d1qksa2         186 KILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTF  265 (432)
T ss_dssp             EEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTT
T ss_pred             eEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCC
Confidence            999977654 3223222 3456788999999999988888766559999999988887765431   2334455566555


Q ss_pred             CCEEEEEe-CCCeEEEEEceecc
Q 014977          273 VQWLAVAS-DKGTVHIFSLRVRV  294 (415)
Q Consensus       273 g~~l~s~s-~dg~i~vwd~~~~~  294 (415)
                      +...++.. .++.|.+|+.....
T Consensus       266 g~~~~~~~lg~~~v~~~~~~~~~  288 (432)
T d1qksa2         266 GPVWATSHMGDDSVALIGTDPEG  288 (432)
T ss_dssp             EEEEEEEBSSSSEEEEEECCTTT
T ss_pred             CceecccccCCceEEeccccccc
Confidence            65555543 37889999866543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.74  E-value=4.7e-16  Score=139.76  Aligned_cols=212  Identities=9%  Similarity=-0.049  Sum_probs=152.2

Q ss_pred             CCCCceEEEEEeCCCCEEE-EEe-CCcEEEEEccCCceeEEEeccCCC---eeEEEEeeeCCeEEEEecCCCCC------
Q 014977           42 VDEIELISVSWNQDYGCFA-AGT-SCGFRIYNCEPFKETFRRDLKSGG---FRIVEMLFRCNILALVGAGDNSQ------  110 (415)
Q Consensus        42 ~h~~~V~~l~~sp~g~~la-~g~-d~~v~iw~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~s~~~d~~------  110 (415)
                      .+...+.+++|+|||++++ +++ ++.|.+||+.+++...........   .....+.+++++..++.+..+..      
T Consensus        31 ~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~  110 (337)
T d1pbyb_          31 DAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHF  110 (337)
T ss_dssp             TCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCE
T ss_pred             CCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeec
Confidence            3445678899999999875 555 899999999997776655442222   22335778888766655432100      


Q ss_pred             -CCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEeccCC---------------
Q 014977          111 -YPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLAN---------------  173 (415)
Q Consensus       111 -~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~---------------  173 (415)
                       ..+..+.+||..+++.+..+.+...+..+.|+|++.+++ .++.+.+||..+++....+..+..               
T Consensus       111 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (337)
T d1pbyb_         111 EVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWN  190 (337)
T ss_dssp             EECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCC
T ss_pred             cccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcCCcceeeeecCcEEEEeecCCccccceecCCcceeec
Confidence             023789999999999999999888899999999998887 777888999877765554432110               


Q ss_pred             -------------------------------------------------CcceEEEecCCCceEEEEeCCccCeEEEEEc
Q 014977          174 -------------------------------------------------LRGLCCLSHHSSTSVLACPGLQRGQVRIEHF  204 (415)
Q Consensus       174 -------------------------------------------------~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~  204 (415)
                                                                       ......+...+++.+++.   .++.|++|+.
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~v~d~  267 (337)
T d1pbyb_         191 QHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFG---AYNVLESFDL  267 (337)
T ss_dssp             CCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEE---EESEEEEEET
T ss_pred             cccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEE---ccccEEEEEC
Confidence                                                             001122233344444433   3678999888


Q ss_pred             CCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEec
Q 014977          205 GLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR  257 (415)
Q Consensus       205 ~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~  257 (415)
                      ..........+...+.+++|+|||++|++++.++. |+|||..+++.+.+++.
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~-i~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         268 EKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGD-LAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             TTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSE-EEEEETTTCCEEEEEEC
T ss_pred             CCCcEEEEEcCCCCEEEEEECCCCCEEEEEeCCCc-EEEEECCCCcEEEEEEC
Confidence            76554444456778899999999999999999999 99999999999988875

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.73  E-value=1.7e-15  Score=138.73  Aligned_cols=247  Identities=5%  Similarity=-0.102  Sum_probs=151.0

Q ss_pred             CCCCCCceEEEEEeCCCCEEEEEe------CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCC---
Q 014977           40 SDVDEIELISVSWNQDYGCFAAGT------SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQ---  110 (415)
Q Consensus        40 ~~~h~~~V~~l~~sp~g~~la~g~------d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~---  110 (415)
                      ...+..++..++++|||+.+++..      .+.+.+||.++.+.+....  .+..  ..+.|+|++..++.+..+..   
T Consensus        16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~--~~~~--~~~a~SpDG~~l~va~~~~~~~~   91 (373)
T d2madh_          16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVN--GGFL--PNPVAAHSGSEFALASTSFSRIA   91 (373)
T ss_pred             cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEe--CCCC--ccEEEcCCCCEEEEEeecCCccc
Confidence            456888899999999999988653      3568899988877655432  3332  26889999988776643211   


Q ss_pred             --CCCCeEEEEECCCCCEEEEEE-ccCc-------eeEEEEcCCeEEEE-----eCCeEEEEEcCCceeeeEEeccCCCc
Q 014977          111 --YPPTKVIIWDDHQSRCIGEFA-FRSD-------VRSVKLSRDRIVVV-----LEHKIYVYSFVDLKLLHQIETLANLR  175 (415)
Q Consensus       111 --~~~~~i~vwd~~~~~~~~~~~-~~~~-------i~~l~~~~~~~~~~-----~d~~i~iwd~~~~~~~~~~~~~~~~~  175 (415)
                        ..++.|.+||..+++.+..+. +...       ...+.|+++++.+.     .++.+.+|+....+........    
T Consensus        92 ~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~----  167 (373)
T d2madh_          92 KGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSP----  167 (373)
T ss_pred             ccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccc----
Confidence              123789999999999888776 2222       23456666665443     2455666665554433322211    


Q ss_pred             ceEEEecCCCceEEEEeCCccCeEEEE-----------------------------------------------EcCCcc
Q 014977          176 GLCCLSHHSSTSVLACPGLQRGQVRIE-----------------------------------------------HFGLNM  208 (415)
Q Consensus       176 ~~~~~~~~~~~~~l~~~g~~dg~v~i~-----------------------------------------------~~~~~~  208 (415)
                      ....+++++  ..++++.+.|+.+.+|                                               +.....
T Consensus       168 ~~~~~s~~g--~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  245 (373)
T d2madh_         168 TCYHIHPGA--PSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAG  245 (373)
T ss_pred             eeEEEecCC--CcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCe
Confidence            112222222  1222222334444443                                               322211


Q ss_pred             eEEE---ecC----------ccceEEEEeCCCCCEEE----------EEeCCCcEEEEEECCCCcEEEEEecCCCcccEE
Q 014977          209 IKLI---NAH----------DSHIACFTLTLDGLLLA----------TASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIY  265 (415)
Q Consensus       209 ~~~~---~~~----------~~~i~~l~~sp~g~~l~----------s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~  265 (415)
                      ....   ..+          ......+++++++..++          +...++. +.+||+.+++.+..+.   +...+.
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-v~~~d~~t~~~~~~~~---~~~~~~  321 (373)
T d2madh_         246 ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKE-VTSVTGLVGQTSSQIS---LGHDVD  321 (373)
T ss_pred             EEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCe-EEEEECCCCcEEEEec---CCCCee
Confidence            1110   001          11223355666665443          3445566 8999999999998876   445789


Q ss_pred             EEEeCCCCCE--EEEEeCCCeEEEEEceecccCCCCC
Q 014977          266 SIALSPNVQW--LAVASDKGTVHIFSLRVRVVGEDSS  300 (415)
Q Consensus       266 ~l~~spdg~~--l~s~s~dg~i~vwd~~~~~~~~~~~  300 (415)
                      .++|+|||+.  +++++.|++|+|||+.+++....+.
T Consensus       322 ~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~  358 (373)
T d2madh_         322 AISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTV  358 (373)
T ss_pred             EEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEC
Confidence            9999999984  4678899999999999998765444

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=3.4e-15  Score=134.08  Aligned_cols=231  Identities=11%  Similarity=0.082  Sum_probs=149.2

Q ss_pred             EEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEE-EecCCCCCCCCCeEEEEECCCCCEEEE----EEc
Q 014977           59 FAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILAL-VGAGDNSQYPPTKVIIWDDHQSRCIGE----FAF  132 (415)
Q Consensus        59 la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~~~~~~i~vwd~~~~~~~~~----~~~  132 (415)
                      ++++. ++.|+||+++..+.........+...+..++|+||+..| +++..+     +.|++|++.......+    ...
T Consensus         7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d-----~~i~~~~i~~~~~~~~~~~~~~~   81 (333)
T d1ri6a_           7 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPE-----FRVLAYRIAPDDGALTFAAESAL   81 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTT-----TEEEEEEECTTTCCEEEEEEEEC
T ss_pred             EEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCC-----CeEEEEEEeCCCCcEEEeeeccc
Confidence            34555 999999999764432222222566777889999999776 555555     9999999876543322    235


Q ss_pred             cCceeEEEEcCCeEEEE----eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcc
Q 014977          133 RSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNM  208 (415)
Q Consensus       133 ~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~  208 (415)
                      ...+..++|+|||++++    .++.|.+|+....................++..++++.+++.....+..|.+|+.....
T Consensus        82 ~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~  161 (333)
T d1ri6a_          82 PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDG  161 (333)
T ss_dssp             SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             CCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCC
Confidence            66788999999998877    47789999987665544443322222344444555666666666667778886654422


Q ss_pred             eEE-------EecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCc----EEEEEec----CCCcccEEEEEeCCCC
Q 014977          209 IKL-------INAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGT----RLQEVRR----GVDRAEIYSIALSPNV  273 (415)
Q Consensus       209 ~~~-------~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~----~~~~~~~----~~~~~~v~~l~~spdg  273 (415)
                      ...       ..........++|++++.+++..........+|+.....    ....+..    .........+++++|+
T Consensus       162 ~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~  241 (333)
T d1ri6a_         162 HLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDG  241 (333)
T ss_dssp             CEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTS
T ss_pred             cceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEeccc
Confidence            111       122345567899999999877665443328888865432    2222221    1122356778999999


Q ss_pred             CEEEEE-eCCCeEEEEEceecc
Q 014977          274 QWLAVA-SDKGTVHIFSLRVRV  294 (415)
Q Consensus       274 ~~l~s~-s~dg~i~vwd~~~~~  294 (415)
                      ++++.. ..++.+.+|++....
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~  263 (333)
T d1ri6a_         242 RHLYACDRTASLITVFSVSEDG  263 (333)
T ss_dssp             SEEEEEETTTTEEEEEEECTTS
T ss_pred             CceeeecccCCeEEEEEEcCCC
Confidence            977654 556799999997654

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=7.1e-16  Score=138.59  Aligned_cols=247  Identities=12%  Similarity=0.077  Sum_probs=162.7

Q ss_pred             CCCCCceEEEEEeCCCCEEEEEe--CCcEEEEEccCCceeEEEec-cCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEE
Q 014977           41 DVDEIELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDL-KSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI  117 (415)
Q Consensus        41 ~~h~~~V~~l~~sp~g~~la~g~--d~~v~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~  117 (415)
                      .+|.+.+..++|+|||++|+++.  ++.|++|+++.......... ......+..+.+++++..++.++.+    ++.|.
T Consensus        33 ~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~----~~~v~  108 (333)
T d1ri6a_          33 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYN----AGNVS  108 (333)
T ss_dssp             EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETT----TTEEE
T ss_pred             EcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccC----CCcee
Confidence            46888999999999999996665  89999999986543332211 1334445678899998777666542    38999


Q ss_pred             EEECCCCCEEEEEE---ccCceeEEEEcCCeEEEE----eCCeEEEEEcCCceeeeEEe----ccCCCcceEEEecCCCc
Q 014977          118 IWDDHQSRCIGEFA---FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIE----TLANLRGLCCLSHHSST  186 (415)
Q Consensus       118 vwd~~~~~~~~~~~---~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  186 (415)
                      +|+...........   +...+.++.++|+++.++    .+..|.+|+...........    ..........+.+++++
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~  188 (333)
T d1ri6a_         109 VTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNE  188 (333)
T ss_dssp             EEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTS
T ss_pred             eeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccc
Confidence            99977766554443   567788999999998776    46789999986643322211    11111233455566666


Q ss_pred             eEEEEeCCccCeEEEEEcCCcc--e---EEEe------cCccceEEEEeCCCCCEEEEEe-CCCcEEEEEECCCCcEEEE
Q 014977          187 SVLACPGLQRGQVRIEHFGLNM--I---KLIN------AHDSHIACFTLTLDGLLLATAS-TRGTLIRIFNTVDGTRLQE  254 (415)
Q Consensus       187 ~~l~~~g~~dg~v~i~~~~~~~--~---~~~~------~~~~~i~~l~~sp~g~~l~s~s-~dg~~I~vwd~~~~~~~~~  254 (415)
                      .+++.+....+...++......  .   ..+.      ........+++++++++++... .++. +.+|++........
T Consensus       189 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~  267 (333)
T d1ri6a_         189 QYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASL-ITVFSVSEDGSVLS  267 (333)
T ss_dssp             SEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTE-EEEEEECTTSCCEE
T ss_pred             eeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCe-EEEEEEcCCCCEEE
Confidence            6666656666777776544321  1   1111      1234566789999999766654 4566 99998875543322


Q ss_pred             Eec-CCCcccEEEEEeCCCCCEEEEEe-CCCeEEEEEcee
Q 014977          255 VRR-GVDRAEIYSIALSPNVQWLAVAS-DKGTVHIFSLRV  292 (415)
Q Consensus       255 ~~~-~~~~~~v~~l~~spdg~~l~s~s-~dg~i~vwd~~~  292 (415)
                      +.. ......+.+++|+|||++|++++ .++.|.+|+++.
T Consensus       268 ~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~  307 (333)
T d1ri6a_         268 KEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG  307 (333)
T ss_dssp             EEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred             EEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEEC
Confidence            221 11234577899999999987765 468999997754

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.65  E-value=9.7e-15  Score=132.44  Aligned_cols=237  Identities=12%  Similarity=-0.027  Sum_probs=148.6

Q ss_pred             eEEEEEeCCCCEEEEE----------e-CCcEEEEEccCCceeEEEeccCCC-----eeEEEEeeeCCeEEEEec--CCC
Q 014977           47 LISVSWNQDYGCFAAG----------T-SCGFRIYNCEPFKETFRRDLKSGG-----FRIVEMLFRCNILALVGA--GDN  108 (415)
Q Consensus        47 V~~l~~sp~g~~la~g----------~-d~~v~iw~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~s~--~~d  108 (415)
                      +..++|+|||++|++.          . ++.|++||..+.+...........     .....+.|++++..++..  +.+
T Consensus        49 ~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~  128 (355)
T d2bbkh_          49 LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPA  128 (355)
T ss_dssp             SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSS
T ss_pred             CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCC
Confidence            3478999999988764          3 678999999987665544331111     112346688877554433  333


Q ss_pred             CCCCCCeEEEEECCCCCEEEEEEccCce--------eEEEEcCCeEEEE----eCCeEEEEEcCCceeeeEEeccCCCcc
Q 014977          109 SQYPPTKVIIWDDHQSRCIGEFAFRSDV--------RSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANLRG  176 (415)
Q Consensus       109 ~~~~~~~i~vwd~~~~~~~~~~~~~~~i--------~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~  176 (415)
                           ..+.+|+..+++.+..+......        ..+.+++++..+.    .++.+.+++.......     +.....
T Consensus       129 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~-----~~~~~~  198 (355)
T d2bbkh_         129 -----PAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPE-----DEFLIN  198 (355)
T ss_dssp             -----CEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCT-----TSCBCS
T ss_pred             -----ceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccce-----ecceee
Confidence                 78999999999988887743322        2344444444333    2333444443322211     111112


Q ss_pred             eEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEe---cC----------ccceEEEEeCCCCCEEEEEeCC------
Q 014977          177 LCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLIN---AH----------DSHIACFTLTLDGLLLATASTR------  237 (415)
Q Consensus       177 ~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~---~~----------~~~i~~l~~sp~g~~l~s~s~d------  237 (415)
                      ...+..  ++..+++ .+.++.+++|+.....+..+.   .+          ......+++++++..++....+      
T Consensus       199 ~~~~~~--~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~  275 (355)
T d2bbkh_         199 HPAYSQ--KAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRH  275 (355)
T ss_dssp             CCEEET--TTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCT
T ss_pred             eccccC--CCCeEEE-ecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceee
Confidence            223332  3334444 347889999887765443322   11          1223458899999987766543      


Q ss_pred             ----CcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCC--EEEEEeCCCeEEEEEceecccCCCCC
Q 014977          238 ----GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQ--WLAVASDKGTVHIFSLRVRVVGEDSS  300 (415)
Q Consensus       238 ----g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~--~l~s~s~dg~i~vwd~~~~~~~~~~~  300 (415)
                          .. |.+||..+++.+..+..   ...+.+++|+|||+  ++++++.|+.|+|||+++++...++.
T Consensus       276 ~~~~~~-v~v~d~~t~~~~~~~~~---~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~  340 (355)
T d2bbkh_         276 KTASRF-VVVLDAKTGERLAKFEM---GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN  340 (355)
T ss_dssp             TSCEEE-EEEEETTTCCEEEEEEE---EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             cCCCCe-EEEEeCCCCcEEEEecC---CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEe
Confidence                25 99999999999888874   44688999999998  45567789999999999998654443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.63  E-value=3.6e-15  Score=134.36  Aligned_cols=231  Identities=8%  Similarity=-0.050  Sum_probs=150.7

Q ss_pred             EeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE--ccCceeEEEEcCCeEEEE----eCCeEEEEEcCCceeee
Q 014977           93 MLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA--FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLH  166 (415)
Q Consensus        93 ~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~--~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~  166 (415)
                      +++++++.++++++.+     +.|.+||+.+++.+.++.  +...+.+++|+|||++++    .++.|++||+.+++.+.
T Consensus         2 ~a~~~~~~~l~~~~~~-----~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~   76 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYP-----NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTF   76 (346)
T ss_dssp             CCCCTTCEEEEEEETT-----TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             ccCCCCCcEEEEEcCC-----CEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeee
Confidence            3578899999999988     999999999999999887  456788999999998764    57899999999999888


Q ss_pred             EEeccCCCc----ceEEEecCCCceEEEEeCC-----------ccCeEEEEEcCC-cceE--------------------
Q 014977          167 QIETLANLR----GLCCLSHHSSTSVLACPGL-----------QRGQVRIEHFGL-NMIK--------------------  210 (415)
Q Consensus       167 ~~~~~~~~~----~~~~~~~~~~~~~l~~~g~-----------~dg~v~i~~~~~-~~~~--------------------  210 (415)
                      .+.......    ....+.+++++.++++++.           .++.+.+++... +...                    
T Consensus        77 ~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (346)
T d1jmxb_          77 HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDG  156 (346)
T ss_dssp             EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTS
T ss_pred             eecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCC
Confidence            775443221    1223455566666654321           244455544322 1110                    


Q ss_pred             ---------------------EEecCccceEEEEeCCCCCEEE--------------------------EEeCCCcEEEE
Q 014977          211 ---------------------LINAHDSHIACFTLTLDGLLLA--------------------------TASTRGTLIRI  243 (415)
Q Consensus       211 ---------------------~~~~~~~~i~~l~~sp~g~~l~--------------------------s~s~dg~~I~v  243 (415)
                                           .+..+ .....+.++|++..++                          ++..+.. +.+
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  234 (346)
T d1jmxb_         157 SLYVAGPDIYKMDVKTGKYTVALPLR-NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG-YLS  234 (346)
T ss_dssp             CEEEESSSEEEECTTTCCEEEEECST-TCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE-EEE
T ss_pred             EEEEeCCcceEEEccCCCEEEEEecC-CCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCce-EEE
Confidence                                 11000 1111222333333221                          1222334 677


Q ss_pred             EECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccC
Q 014977          244 FNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLI  323 (415)
Q Consensus       244 wd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (415)
                      ||+.++......... +...+..+.+++++.+++.... +.|.+||+.+++...                          
T Consensus       235 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~--------------------------  286 (346)
T d1jmxb_         235 VDLKTGKTHTQEFAD-LTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIK--------------------------  286 (346)
T ss_dssp             EETTTCCEEEEEEEE-CSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEE--------------------------
T ss_pred             EECCCCceEEEEeec-ccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEE--------------------------
Confidence            888777765444322 5567888999999888887664 579999998876431                          


Q ss_pred             CCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC-CEEEEEEeCCcEEEEEEec
Q 014977          324 SPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NTVVIVSMDGSFYRCSFDP  389 (415)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~dg~~~~~~~~~  389 (415)
                                                    .+..+ .....++|+++ ..|++++.||.|++|+...
T Consensus       287 ------------------------------~~~~~-~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t  322 (346)
T d1jmxb_         287 ------------------------------AANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDT  322 (346)
T ss_dssp             ------------------------------EEECS-SCCCEEEECSSSSCEEEESBSSEEEEEETTT
T ss_pred             ------------------------------EEcCC-CCEEEEEEcCCCCEEEEEeCCCcEEEEECcc
Confidence                                          23332 23446899999 7888888899999998754

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.55  E-value=4.1e-14  Score=128.19  Aligned_cols=235  Identities=9%  Similarity=-0.029  Sum_probs=144.0

Q ss_pred             EEEeCCCCEEEEEe------CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCC-CC----CCCCeEEE
Q 014977           50 VSWNQDYGCFAAGT------SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDN-SQ----YPPTKVII  118 (415)
Q Consensus        50 l~~sp~g~~la~g~------d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-~~----~~~~~i~v  118 (415)
                      .+.+||++.+++..      ++.|.+||.++.+.+....  .+...  .++|+|++..++..+.. ..    ..++.|++
T Consensus         7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~--~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v   82 (355)
T d2bbkh_           7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMID--GGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEV   82 (355)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEE--ECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred             EeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEE--CCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEE
Confidence            35689999987754      4469999999876655433  33333  57899998655432210 00    01278999


Q ss_pred             EECCCCCEEEEEE-c-------cCceeEEEEcCCeEEEE-----eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCC
Q 014977          119 WDDHQSRCIGEFA-F-------RSDVRSVKLSRDRIVVV-----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSS  185 (415)
Q Consensus       119 wd~~~~~~~~~~~-~-------~~~i~~l~~~~~~~~~~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (415)
                      ||+.+++.+..+. +       ......+.|++++..++     .+..+.+|+..+++.+..+..+..   ... .+...
T Consensus        83 ~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~  158 (355)
T d2bbkh_          83 FDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHI-FPTAP  158 (355)
T ss_dssp             ECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEE-EEEET
T ss_pred             EECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCc---ceE-eecCC
Confidence            9999999988876 2       12345689999988766     367899999999998887765432   111 11112


Q ss_pred             ceEEEEeCCccCeEEE-EEcCCcceEEEe------cCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEE--EEe
Q 014977          186 TSVLACPGLQRGQVRI-EHFGLNMIKLIN------AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQ--EVR  256 (415)
Q Consensus       186 ~~~l~~~g~~dg~v~i-~~~~~~~~~~~~------~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~--~~~  256 (415)
                      ...++.+  .|+...+ ..........+.      .+...+....+.+++..++.++.++. +++|++..++...  ...
T Consensus       159 ~~~~~~~--~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~  235 (355)
T d2bbkh_         159 DTFFMHC--RDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGK-IHQIDLSSGDAKFLPAVE  235 (355)
T ss_dssp             TEEEEEE--TTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSE-EEEEECTTSSCEECCCEE
T ss_pred             cceEEEc--CCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCe-EEEEecCCCcEEEEeccC
Confidence            2222221  2333333 222222222111      23344556677888888999999999 9999998776432  111


Q ss_pred             cCC--------CcccEEEEEeCCCCCEEEEEeCC----------CeEEEEEceeccc
Q 014977          257 RGV--------DRAEIYSIALSPNVQWLAVASDK----------GTVHIFSLRVRVV  295 (415)
Q Consensus       257 ~~~--------~~~~v~~l~~spdg~~l~s~s~d----------g~i~vwd~~~~~~  295 (415)
                      ...        .......+++++++..++....+          ..|.+||+.+++.
T Consensus       236 ~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~  292 (355)
T d2bbkh_         236 ALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER  292 (355)
T ss_dssp             SSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred             CcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcE
Confidence            100        01122357888888887765543          3688888887763

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.46  E-value=1.5e-12  Score=118.83  Aligned_cols=238  Identities=6%  Similarity=-0.112  Sum_probs=146.9

Q ss_pred             EEEEEeCCCCEEEEEe-----------CCcEEEEEccCCceeEEEeccCCC-----eeEEEEeeeCCeEEEEecCCCCCC
Q 014977           48 ISVSWNQDYGCFAAGT-----------SCGFRIYNCEPFKETFRRDLKSGG-----FRIVEMLFRCNILALVGAGDNSQY  111 (415)
Q Consensus        48 ~~l~~sp~g~~la~g~-----------d~~v~iw~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~s~~~d~~~  111 (415)
                      ..++|+|||+.|++.+           ++.|++||..+.+......++...     .....+.|+++++.++.+..+   
T Consensus        68 ~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~---  144 (368)
T d1mdah_          68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFG---  144 (368)
T ss_dssp             CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECS---
T ss_pred             CcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCC---
Confidence            3589999999888754           456999999987766654432211     112347789998766554321   


Q ss_pred             CCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEecc----CCCcceEEEecCCC
Q 014977          112 PPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETL----ANLRGLCCLSHHSS  185 (415)
Q Consensus       112 ~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~  185 (415)
                       ++.+.+||+.+++.+..+.......... .....+++  .|+.+.++++............    ..........+.++
T Consensus       145 -~~~v~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (368)
T d1mdah_         145 -SSAAAGLSVPGASDDQLTKSASCFHIHP-GAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYP  222 (368)
T ss_dssp             -SSCEEEEEETTTEEEEEEECSSCCCCEE-EETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTT
T ss_pred             -CCeEEEEECCCCcEeEEeeccCcceEcc-CCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccC
Confidence             3899999999999988887332221111 11222222  5788888887554333222111    11112233445555


Q ss_pred             ceEEEEeCCccCeEEEEEcCCcceEEEec-------------CccceEEEEeCCCCCEEEEEeCC---------CcEEEE
Q 014977          186 TSVLACPGLQRGQVRIEHFGLNMIKLINA-------------HDSHIACFTLTLDGLLLATASTR---------GTLIRI  243 (415)
Q Consensus       186 ~~~l~~~g~~dg~v~i~~~~~~~~~~~~~-------------~~~~i~~l~~sp~g~~l~s~s~d---------g~~I~v  243 (415)
                      +..+..   ..+.+++.+........+..             .......+++++++..++....+         .. |.+
T Consensus       223 g~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~-v~v  298 (368)
T d1mdah_         223 GMLVWA---VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAEN-TSS  298 (368)
T ss_dssp             TEEEEC---BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEE-EEE
T ss_pred             cEEEEe---cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCce-EEE
Confidence            555432   34555554444332222211             01123457889998877655322         24 899


Q ss_pred             EECCCCcEEEEEecCCCcccEEEEEeCCCCCE--EEEEeCCCeEEEEEceecccCC
Q 014977          244 FNTVDGTRLQEVRRGVDRAEIYSIALSPNVQW--LAVASDKGTVHIFSLRVRVVGE  297 (415)
Q Consensus       244 wd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~--l~s~s~dg~i~vwd~~~~~~~~  297 (415)
                      ||..+++.+..+..   ...+.+++|+|||+.  ++++..|+.|++||..+++...
T Consensus       299 ~D~~t~~~~~~~~~---~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~  351 (368)
T d1mdah_         299 VTASVGQTSGPISN---GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQS  351 (368)
T ss_dssp             EESSSCCEEECCEE---EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEE
T ss_pred             EECCCCcEeEEecC---CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEE
Confidence            99999998888774   457889999999973  4566778999999999998653

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.45  E-value=4.3e-11  Score=108.71  Aligned_cols=211  Identities=9%  Similarity=-0.078  Sum_probs=126.8

Q ss_pred             EEEEeCCCCEEEEEe-----------CCcEEEEEccCCceeEEEeccCCCee-----EEEEeeeCCeEEEE--ecCCCCC
Q 014977           49 SVSWNQDYGCFAAGT-----------SCGFRIYNCEPFKETFRRDLKSGGFR-----IVEMLFRCNILALV--GAGDNSQ  110 (415)
Q Consensus        49 ~l~~sp~g~~la~g~-----------d~~v~iw~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~--s~~~d~~  110 (415)
                      .++|+|||++|+++.           ++.|.+||..+.+.......+.....     ...+.|++++..+.  ....+  
T Consensus        70 ~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~--  147 (373)
T d2madh_          70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAG--  147 (373)
T ss_pred             cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCC--
Confidence            789999999999864           46799999998776555433221111     12245555554332  22222  


Q ss_pred             CCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE----eCCeEEEEEcCCceeeeEEeccCCC----cceE----
Q 014977          111 YPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV----LEHKIYVYSFVDLKLLHQIETLANL----RGLC----  178 (415)
Q Consensus       111 ~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~----~~~~----  178 (415)
                         +.+.+|+....+.....   ....++.+++++..+.    .|+.+.+|+...++...........    ....    
T Consensus       148 ---~~~~~~~~~~~~~~~~~---~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (373)
T d2madh_         148 ---PAVGLVVQGGSSDDQLL---SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQA  221 (373)
T ss_pred             ---CceEEeeccCCeEEEEe---ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEE
Confidence               67888887766554333   3456778888876543    6899999997665544332110000    0000    


Q ss_pred             -------------------------------------------------EEecCCCceEEEE---------eCCccCeEE
Q 014977          179 -------------------------------------------------CLSHHSSTSVLAC---------PGLQRGQVR  200 (415)
Q Consensus       179 -------------------------------------------------~~~~~~~~~~l~~---------~g~~dg~v~  200 (415)
                                                                       .+..++++..++.         ....++.+.
T Consensus       222 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~  301 (373)
T d2madh_         222 NKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVT  301 (373)
T ss_pred             CCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEE
Confidence                                                             0011111111111         122345566


Q ss_pred             EEEcCC-cceEEEecCccceEEEEeCCCCC--EEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCC
Q 014977          201 IEHFGL-NMIKLINAHDSHIACFTLTLDGL--LLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSP  271 (415)
Q Consensus       201 i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~--~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp  271 (415)
                      +|+... +.+..+ .+...+..++|+|||+  ++++++.|+. |+|||+.+++.+..+..  +......|++.+
T Consensus       302 ~~d~~t~~~~~~~-~~~~~~~~~a~spDG~~~l~vt~~~d~~-v~v~D~~tg~~~~~~~~--~g~~P~~l~~~~  371 (373)
T d2madh_         302 SVTGLVGQTSSQI-SLGHDVDAISVAQDGGPDLYALSAGTEV-LHIYDAGAGDQDQSTVE--LGSGPQVLSVMN  371 (373)
T ss_pred             EEECCCCcEEEEe-cCCCCeeEEEECCCCCEEEEEEeCCCCe-EEEEECCCCCEEEEECC--CCCCCcEEEEec
Confidence            655443 334433 4667789999999998  4567889999 99999999999999986  444566666644

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.36  E-value=3.1e-09  Score=92.41  Aligned_cols=239  Identities=13%  Similarity=0.169  Sum_probs=163.1

Q ss_pred             CCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEec----cCCCeeEEEEeeeC--CeEEEEecCCCCCCCCCeE
Q 014977           44 EIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDL----KSGGFRIVEMLFRC--NILALVGAGDNSQYPPTKV  116 (415)
Q Consensus        44 ~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~l~s~~~d~~~~~~~i  116 (415)
                      -..-..|+++++|+++++-. ++.|++|+.+. ..+.....    .........+.+..  ...+++..+..     +.|
T Consensus        22 f~~P~gvavd~dg~i~VaD~~n~rI~v~d~~G-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-----~~i   95 (279)
T d1q7fa_          22 FTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPT-----HQI   95 (279)
T ss_dssp             BSCEEEEEECTTCCEEEEEGGGTEEEEECTTS-CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGG-----CEE
T ss_pred             ECCccEEEEcCCCCEEEEECCCCEEEEEeCCC-CEEEEecccCCCcccccccccccccccccccceeccCCc-----ccc
Confidence            34468999999999887766 88899998763 22211110    01112233334333  33444444433     678


Q ss_pred             EEEECCCCCEEEEEE--ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEE
Q 014977          117 IIWDDHQSRCIGEFA--FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC  191 (415)
Q Consensus       117 ~vwd~~~~~~~~~~~--~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  191 (415)
                      .+++ ..++....+.  .......+++.+++.+++   ..+.+.+++ .+++.+..+...........+..++++.++++
T Consensus        96 ~~~~-~~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~-~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~  173 (279)
T d1q7fa_          96 QIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFD-QNGNVLHKFGCSKHLEFPNGVVVNDKQEIFIS  173 (279)
T ss_dssp             EEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEEC-TTSCEEEEEECTTTCSSEEEEEECSSSEEEEE
T ss_pred             cccc-ccccceeecCCCcccccceeccccCCcEEEEeeccceeeEec-cCCceeecccccccccccceeeeccceeEEee
Confidence            7777 4677777765  345678899999988777   356788887 45677776654444445666777777766655


Q ss_pred             eCCccCeEEEEEcCCcceEEEe--cCccceEEEEeCCCCCEEEEEeC-CCcEEEEEECCCCcEEEEEecCCCcccEEEEE
Q 014977          192 PGLQRGQVRIEHFGLNMIKLIN--AHDSHIACFTLTLDGLLLATAST-RGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIA  268 (415)
Q Consensus       192 ~g~~dg~v~i~~~~~~~~~~~~--~~~~~i~~l~~sp~g~~l~s~s~-dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~  268 (415)
                       ....+.|++++..++.+..+-  +.......|++.++|+++++-.. ++. |.+|+ .+|+.+..+...........|+
T Consensus       174 -d~~~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~-v~~f~-~~G~~~~~~~~~~~~~~p~~va  250 (279)
T d1q7fa_         174 -DNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFN-LTIFT-QDGQLISALESKVKHAQCFDVA  250 (279)
T ss_dssp             -EGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCE-EEEEC-TTSCEEEEEEESSCCSCEEEEE
T ss_pred             -eccccceeeeecCCceeeeecccccccCCcccccccCCeEEEEECCCCcE-EEEEC-CCCCEEEEEeCCCCCCCEeEEE
Confidence             557889999999888777763  34456789999999997776544 446 99998 5799888876543444688999


Q ss_pred             eCCCCCEEEEEeCCCeEEEEEceecc
Q 014977          269 LSPNVQWLAVASDKGTVHIFSLRVRV  294 (415)
Q Consensus       269 ~spdg~~l~s~s~dg~i~vwd~~~~~  294 (415)
                      +.+||.+++ +..++.|++|+.....
T Consensus       251 v~~dG~l~V-~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         251 LMDDGSVVL-ASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             EETTTEEEE-EETTTEEEEEECSCCC
T ss_pred             EeCCCcEEE-EeCCCeEEEEEeeeec
Confidence            999997554 5678999999988764

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.33  E-value=3.5e-11  Score=110.20  Aligned_cols=237  Identities=10%  Similarity=-0.025  Sum_probs=157.8

Q ss_pred             CCCCCCceEEEEEeCCCCEEEEEe--CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeE--EEEecCCCCC-----
Q 014977           40 SDVDEIELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNIL--ALVGAGDNSQ-----  110 (415)
Q Consensus        40 ~~~h~~~V~~l~~sp~g~~la~g~--d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~s~~~d~~-----  110 (415)
                      ...|...+....++|||++|.+..  ++.|.++|+++++......+ ........+.|++++.  +++..+.+..     
T Consensus        67 gd~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~i-P~g~gphgi~~spdg~t~YV~~~~~~~v~~~~d  145 (441)
T d1qnia2          67 GDCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHI-PNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPND  145 (441)
T ss_dssp             CCBCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEEC-TTCCCEEEEEECCSSBCCEEEEEECSCEESSCS
T ss_pred             CcccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEec-CCCCCccceEEeccCCEEEEEeccCCcccccCc
Confidence            455677777888899999998877  88999999999876555444 4456677888887765  4444333200     


Q ss_pred             -------CCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE--e-------------------------------
Q 014977          111 -------YPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--L-------------------------------  150 (415)
Q Consensus       111 -------~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~-------------------------------  150 (415)
                             .....+..+|..+.+...++........+.++|+|++++  .                               
T Consensus       146 g~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~  225 (441)
T d1qnia2         146 GTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAA  225 (441)
T ss_dssp             SSCCCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHH
T ss_pred             ccccccccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEE
Confidence                   001245678999999988888777889999999998776  1                               


Q ss_pred             -----------CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCc---------ceE
Q 014977          151 -----------EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLN---------MIK  210 (415)
Q Consensus       151 -----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~---------~~~  210 (415)
                                 ++.+.+++....+.+..+.....+   ..+..+|+++++++++..+++|.+|+...-         ...
T Consensus       226 ~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksP---hGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~  302 (441)
T d1qnia2         226 VKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNP---HGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRD  302 (441)
T ss_dssp             HHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSC---CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGG
T ss_pred             ecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCc---cCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcce
Confidence                       122333333334445555544433   334556778888888999999999886541         111


Q ss_pred             EEecC---ccceEEEEeCCCCCEEEEEeCCCcEEEEEECCC----------CcEEEEEecC---CCcccEEEEEeCCCCC
Q 014977          211 LINAH---DSHIACFTLTLDGLLLATASTRGTLIRIFNTVD----------GTRLQEVRRG---VDRAEIYSIALSPNVQ  274 (415)
Q Consensus       211 ~~~~~---~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~----------~~~~~~~~~~---~~~~~v~~l~~spdg~  274 (415)
                      .+.++   .-.....+|+++|..+.+...|.. |..|++..          ...+..+..+   .|...+.+.+++|||+
T Consensus       303 ~~~~~~~~glgplh~~fd~~g~~yts~~~ds~-v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk  381 (441)
T d1qnia2         303 TIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQ-VCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGK  381 (441)
T ss_dssp             GEEECCBCCSCEEEEEECSSSEEEEEETTTTE-EEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCC
T ss_pred             EEEeecccccCcccceecCCceEEEcccccce-EEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCc
Confidence            11121   112344689999988888999999 99999741          1244444321   1444555667999999


Q ss_pred             EEEEEeC
Q 014977          275 WLAVASD  281 (415)
Q Consensus       275 ~l~s~s~  281 (415)
                      ||++++.
T Consensus       382 ~l~s~~k  388 (441)
T d1qnia2         382 WLVVLSK  388 (441)
T ss_dssp             EEEEEES
T ss_pred             EEEecCc
Confidence            9999953

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.24  E-value=4.3e-11  Score=109.58  Aligned_cols=223  Identities=10%  Similarity=-0.031  Sum_probs=142.3

Q ss_pred             EEEEe-CCcEEEEEccCCceeEEEec----------------------------cCCCeeEEEEeeeCCeEEEEec-CCC
Q 014977           59 FAAGT-SCGFRIYNCEPFKETFRRDL----------------------------KSGGFRIVEMLFRCNILALVGA-GDN  108 (415)
Q Consensus        59 la~g~-d~~v~iw~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~l~s~-~~d  108 (415)
                      +++|+ +|.|+||++.+.+.+.+...                            ..|..........+||+++... ..+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            44555 99999999987665444221                            0122334445567888877444 444


Q ss_pred             CCCCCCeEEEEECCCCCEEEEEE--ccCceeEEEEcCCeE--EEE--eCC------------------eEEEEEcCCcee
Q 014977          109 SQYPPTKVIIWDDHQSRCIGEFA--FRSDVRSVKLSRDRI--VVV--LEH------------------KIYVYSFVDLKL  164 (415)
Q Consensus       109 ~~~~~~~i~vwd~~~~~~~~~~~--~~~~i~~l~~~~~~~--~~~--~d~------------------~i~iwd~~~~~~  164 (415)
                           +.|.++|+.+++....+.  ....+..++|+|+++  +++  .+.                  .+..+|..+.+.
T Consensus        94 -----~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v  168 (441)
T d1qnia2          94 -----TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDV  168 (441)
T ss_dssp             -----TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSE
T ss_pred             -----CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCcccee
Confidence                 899999999999888776  577899999999887  444  222                  235578888877


Q ss_pred             eeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEE-EEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEE
Q 014977          165 LHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI-EHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRI  243 (415)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i-~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~v  243 (415)
                      ..++.....   ...+.++++++++++++.....+.. ..........+.... ....+++.|+|+++..++ ++. +.|
T Consensus       169 ~~qI~v~~~---p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n-~p~~~~~~~dGk~~~v~~-~~v-~vv  242 (441)
T d1qnia2         169 AWQVIVDGN---LDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFN-VERIAAAVKAGNFKTIGD-SKV-PVV  242 (441)
T ss_dssp             EEEEEESSC---CCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEE-HHHHHHHHHTTCCBCCTT-CCC-CEE
T ss_pred             eEEEecCCC---ccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCC-ccceEEEecCCCEEEeCC-CCc-EEE
Confidence            777765543   2334445556666654433333322 222222222222111 123345678999776544 566 778


Q ss_pred             EECCCCcEEEEEecCCCcccEEEEEeCCCCCEEE-EEeCCCeEEEEEceeccc
Q 014977          244 FNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLA-VASDKGTVHIFSLRVRVV  295 (415)
Q Consensus       244 wd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~-s~s~dg~i~vwd~~~~~~  295 (415)
                      ++....+.+..+..+   .....+.++|||++++ ++..+++|.|||+++-++
T Consensus       243 d~~~~~~v~~~IPvg---ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~  292 (441)
T d1qnia2         243 DGRGESEFTRYIPVP---KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDD  292 (441)
T ss_dssp             ECSSSCSSEEEECCB---SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHH
T ss_pred             EcccCCceEEEEeCC---CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhh
Confidence            877777777788763   2357899999999875 567789999999987654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.24  E-value=2.3e-09  Score=97.13  Aligned_cols=247  Identities=10%  Similarity=0.082  Sum_probs=144.9

Q ss_pred             CCCceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeE--EEEecCCCCCCCCCeEEEEE
Q 014977           43 DEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNIL--ALVGAGDNSQYPPTKVIIWD  120 (415)
Q Consensus        43 h~~~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~s~~~d~~~~~~~i~vwd  120 (415)
                      ....+..|+|+|++++|.+...+.+..|.++...................+.+++++.  +++....    ..+.|..+.
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~----~~~~v~~~~  113 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQ----PPYAVYANP  113 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSS----TTCCEEEEE
T ss_pred             CCCCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecC----CCCEEEEeE
Confidence            4455667999999999998887788888887543333221111112223445566654  3444322    124444443


Q ss_pred             CC-------------CCCEEEE---EE--ccCceeEEEEcCCeEEEE----eCCeEEEEEcCC-ceee--eEEeccCCCc
Q 014977          121 DH-------------QSRCIGE---FA--FRSDVRSVKLSRDRIVVV----LEHKIYVYSFVD-LKLL--HQIETLANLR  175 (415)
Q Consensus       121 ~~-------------~~~~~~~---~~--~~~~i~~l~~~~~~~~~~----~d~~i~iwd~~~-~~~~--~~~~~~~~~~  175 (415)
                      +.             .++.-..   ..  ....+.++.|+|+|++++    ....|.+|+... ++..  ..........
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~  193 (365)
T d1jofa_         114 FYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGD  193 (365)
T ss_dssp             ESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTC
T ss_pred             ccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCC
Confidence            21             1111111   11  234578999999999777    356888888753 3222  2222222223


Q ss_pred             ceEEEecCCCceEEEEeCCccCeEEEEEcCCcceE---EEe-----------------cCccceEEEEeCCCCCEEEEEe
Q 014977          176 GLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIK---LIN-----------------AHDSHIACFTLTLDGLLLATAS  235 (415)
Q Consensus       176 ~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~---~~~-----------------~~~~~i~~l~~sp~g~~l~s~s  235 (415)
                      ....+.++++++++.++...+++|.+++.+.....   ...                 .+......+.++|+|++|+++.
T Consensus       194 gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsn  273 (365)
T d1jofa_         194 HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS  273 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred             ceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEc
Confidence            56677778888888777888899999776543221   111                 1112355789999999988764


Q ss_pred             C------CCcEEEEEECCCCcEEEE----EecCCCcccEEEEEeCC-CCCEEEEE-eCCCeEEEEEceecc
Q 014977          236 T------RGTLIRIFNTVDGTRLQE----VRRGVDRAEIYSIALSP-NVQWLAVA-SDKGTVHIFSLRVRV  294 (415)
Q Consensus       236 ~------dg~~I~vwd~~~~~~~~~----~~~~~~~~~v~~l~~sp-dg~~l~s~-s~dg~i~vwd~~~~~  294 (415)
                      .      .+. |..|++.....+..    ...........+++++| +|++|+++ ..++.|.+|+++...
T Consensus       274 r~~~~~~~~~-i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         274 RANKFELQGY-IAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             EESSTTSCCE-EEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             ccCCCccceE-EEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence            3      234 66677654322211    11111223467799998 89988766 467899999986543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.17  E-value=3e-10  Score=106.81  Aligned_cols=118  Identities=14%  Similarity=0.096  Sum_probs=86.7

Q ss_pred             EEEEeCCCCEEEEEeCCcEEEEEccCCceeEEE---eccCCCeeEEEEeeeCCeEEEEecCCCCC-C---CCCeEEEEEC
Q 014977           49 SVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRR---DLKSGGFRIVEMLFRCNILALVGAGDNSQ-Y---PPTKVIIWDD  121 (415)
Q Consensus        49 ~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~s~~~d~~-~---~~~~i~vwd~  121 (415)
                      .+.|.++++++.. .++.+.+||+.+++.....   .+..+...+.++.|+||+..|+....... +   ..+.+.+||+
T Consensus        21 ~~~W~~d~~~~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~   99 (470)
T d2bgra1          21 SLRWISDHEYLYK-QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDL   99 (470)
T ss_dssp             CCEECSSSEEEEE-SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             CCEeCCCCEEEEE-cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEEC
Confidence            4778999987653 4788999999987654332   23344567888999999987776532100 0   1268899999


Q ss_pred             CCCCEEEEEEccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeE
Q 014977          122 HQSRCIGEFAFRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQ  167 (415)
Q Consensus       122 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~  167 (415)
                      .+++......+...+..+.|+|||+.++  .++.+++|+..+++..+.
T Consensus       100 ~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g~~~~~  147 (470)
T d2bgra1         100 NKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRI  147 (470)
T ss_dssp             TTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEEC
T ss_pred             CCCcccccccCCccccccccccCcceeeEeecccceEEECCCCceeee
Confidence            9887554344788899999999999998  799999999887765543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.09  E-value=1.8e-08  Score=86.47  Aligned_cols=237  Identities=8%  Similarity=-0.050  Sum_probs=144.3

Q ss_pred             CCCceEEEEEeCCCCEEEEEe--CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEE
Q 014977           43 DEIELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWD  120 (415)
Q Consensus        43 h~~~V~~l~~sp~g~~la~g~--d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd  120 (415)
                      +.-.-..+++.++|.++++..  .+.+..++........ ... ........+++++++.++++....     +.+++++
T Consensus        12 ~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~-~~~-~~~~~p~gvav~~~g~i~v~d~~~-----~~i~~~~   84 (260)
T d1rwia_          12 FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV-LPF-NGLYQPQGLAVDGAGTVYVTDFNN-----RVVTLAA   84 (260)
T ss_dssp             SCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEE-CCC-CSCCSCCCEEECTTCCEEEEETTT-----EEEEECT
T ss_pred             CcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEE-ecc-CCccCceEEEEcCCCCEEEeeeee-----ceeeeee
Confidence            334458999999999777765  5666666655433221 111 222334556778888777776654     6676666


Q ss_pred             CCCCCEEEEEEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccC
Q 014977          121 DHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRG  197 (415)
Q Consensus       121 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg  197 (415)
                      ..++..+..........++++.+++.+.+   .+..+..++...............  ....+..++++.++++ ...++
T Consensus        85 ~~~~~~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~i~~~~~g~~~v~-~~~~~  161 (260)
T d1rwia_          85 GSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLN--DPDGVAVDNSGNVYVT-DTDNN  161 (260)
T ss_dssp             TCSCCEECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCC--SCCEEEECTTCCEEEE-EGGGT
T ss_pred             eccceeeeeeeeeeecccccccccceeEeeccccccccccccccceeeeeeecccC--CcceeeecCCCCEeee-ccccc
Confidence            55555443333446678999999987777   356677777544322211111112  2234455556665554 44567


Q ss_pred             eEEEEEcCCcceEEEe-cCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEE
Q 014977          198 QVRIEHFGLNMIKLIN-AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWL  276 (415)
Q Consensus       198 ~v~i~~~~~~~~~~~~-~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l  276 (415)
                      .|..++.++.....+. ..-.....|++.++|+++++....+. |..++..... ...+... .-.....|+++++|.++
T Consensus       162 ~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~-i~~~~~~~~~-~~~~~~~-~~~~P~~i~~d~~g~l~  238 (260)
T d1rwia_         162 RVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQ-VVKLLAGSTT-STVLPFT-GLNTPLAVAVDSDRTVY  238 (260)
T ss_dssp             EEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTE-EEEECTTCSC-CEECCCC-SCCCEEEEEECTTCCEE
T ss_pred             cccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCE-EEEEeCCCCe-EEEEccC-CCCCeEEEEEeCCCCEE
Confidence            7777776665544443 34456788999999998888777888 8888754333 2233221 22457899999999988


Q ss_pred             EEEeCCCeEEEEEcee
Q 014977          277 AVASDKGTVHIFSLRV  292 (415)
Q Consensus       277 ~s~s~dg~i~vwd~~~  292 (415)
                      ++-..+++|+.++...
T Consensus       239 vad~~~~rI~~i~~~~  254 (260)
T d1rwia_         239 VADRGNDRVVKLTSLE  254 (260)
T ss_dssp             EEEGGGTEEEEECCCG
T ss_pred             EEECCCCEEEEEeCCC
Confidence            7777777666555433

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.09  E-value=9.4e-08  Score=81.93  Aligned_cols=216  Identities=13%  Similarity=0.076  Sum_probs=130.0

Q ss_pred             EEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeE
Q 014977           67 FRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRI  146 (415)
Q Consensus        67 v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~  146 (415)
                      |.|.|.+........   .+...+....|+|||..|+......  ....+.+.+...+.......+........|+|++.
T Consensus        21 l~i~d~dG~~~~~l~---~~~~~~~sP~wSPDGk~IAf~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~   95 (269)
T d2hqsa1          21 LRVSDYDGYNQFVVH---RSPQPLMSPAWSPDGSKLAYVTFES--GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS   95 (269)
T ss_dssp             EEEEETTSCSCEEEE---EESSCEEEEEECTTSSEEEEEECTT--SSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSS
T ss_pred             EEEEcCCCCCcEEEe---cCCCceeeeEECCCCCEEEEEEeec--cCcceeeeecccCceeEEeeeecccccceecCCCC
Confidence            555566543332221   3455577889999998877543321  12467777877777766666888889999999998


Q ss_pred             EEE----eCC--eEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEE--EEcCCcceEEEecCccc
Q 014977          147 VVV----LEH--KIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRI--EHFGLNMIKLINAHDSH  218 (415)
Q Consensus       147 ~~~----~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i--~~~~~~~~~~~~~~~~~  218 (415)
                      .++    .++  .+..+............. ........+.+.++  .+..+...++...+  .+........+..+...
T Consensus        96 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~  172 (269)
T d2hqsa1          96 KLAFALSKTGSLNLYVMDLASGQIRQVTDG-RSNNTEPTWFPDSQ--NLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQ  172 (269)
T ss_dssp             EEEEEECTTSSCEEEEEETTTCCEEECCCC-SSCEEEEEECTTSS--EEEEEECTTSSCEEEEEETTSSCCEECCCSSSE
T ss_pred             eeeEeeecCCccceeecccccccceeeeec-cccccccccccccc--cceecccccCCceEeeeecccccceeeeccccc
Confidence            887    222  333333333332222221 22112223344333  33333445554444  55556666666667777


Q ss_pred             eEEEEeCCCCCEEEEEeCCC-c-EEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCC---CeEEEEEceec
Q 014977          219 IACFTLTLDGLLLATASTRG-T-LIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDK---GTVHIFSLRVR  293 (415)
Q Consensus       219 i~~l~~sp~g~~l~s~s~dg-~-~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~d---g~i~vwd~~~~  293 (415)
                      .....|+|+|+.++..+.++ . .|.+.|...+... .+ .  .........|||||++|+..+..   ..|++++++.+
T Consensus       173 ~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~-~~-~--~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~  248 (269)
T d2hqsa1         173 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VL-S--STFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR  248 (269)
T ss_dssp             EEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-EC-C--CSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred             ccccccccccceeEEEeecCCceeeeEeecccccce-Ee-e--cCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence            78889999999888776654 2 2455565555432 22 2  33456778999999998865543   36888998766


Q ss_pred             c
Q 014977          294 V  294 (415)
Q Consensus       294 ~  294 (415)
                      .
T Consensus       249 ~  249 (269)
T d2hqsa1         249 F  249 (269)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.07  E-value=8.7e-08  Score=84.02  Aligned_cols=224  Identities=8%  Similarity=-0.014  Sum_probs=142.2

Q ss_pred             ceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCC-
Q 014977           46 ELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQ-  123 (415)
Q Consensus        46 ~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~-  123 (415)
                      .+..+++.|||+++++.. ++.|..|+.+.  ....  +......+..+++.+++.++++...+     +.+.+|+... 
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g--~~~~--~~~~~~~~~gla~~~dG~l~v~~~~~-----~~~~~~~~~~~   99 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDG--NQQI--HATVEGKVSGLAFTSNGDLVATGWNA-----DSIPVVSLVKS   99 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTC--CEEE--EEECSSEEEEEEECTTSCEEEEEECT-----TSCEEEEEECT
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCC--CEEE--EEcCCCCcceEEEcCCCCeEEEecCC-----ceEEEEEeccc
Confidence            588999999999998887 88776666543  2222  11445567889999999888876554     6777776543 


Q ss_pred             -CCEEEEEE--ccCceeEEEEcCCeEEEE---eCCeEEEEEcCCceeeeEEec--------cCCCcceEEEecCCCceEE
Q 014977          124 -SRCIGEFA--FRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLKLLHQIET--------LANLRGLCCLSHHSSTSVL  189 (415)
Q Consensus       124 -~~~~~~~~--~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l  189 (415)
                       +.......  .....+.+.+.+++.+++   .++.+..++...+........        .........+.++++.  +
T Consensus       100 ~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~--l  177 (302)
T d2p4oa1         100 DGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNF--L  177 (302)
T ss_dssp             TSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTE--E
T ss_pred             ccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCc--e
Confidence             33332222  456688999999999888   467888888776543322221        1112234455665543  3


Q ss_pred             EEeCCccCeEEEEEcCCcc---eEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEE
Q 014977          190 ACPGLQRGQVRIEHFGLNM---IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYS  266 (415)
Q Consensus       190 ~~~g~~dg~v~i~~~~~~~---~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~  266 (415)
                      .++....+.|..++.....   .............++++++|+++++...++. |..++. .++..........-...++
T Consensus       178 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~-V~~i~p-~G~~~~~~~~~~~~~~pt~  255 (302)
T d2p4oa1         178 YVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNS-VVRIAP-DRSTTIIAQAEQGVIGSTA  255 (302)
T ss_dssp             EEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCC-EEEECT-TCCEEEEECGGGTCTTEEE
T ss_pred             eeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCc-EEEECC-CCCEEEEEecCCCCCCceE
Confidence            3345567777765443321   1111223344567999999998888888888 888875 4554433332112345889


Q ss_pred             EEe---CCCCCEEEEEeCC
Q 014977          267 IAL---SPNVQWLAVASDK  282 (415)
Q Consensus       267 l~~---spdg~~l~s~s~d  282 (415)
                      ++|   ++|++.|+.++..
T Consensus       256 vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         256 VAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             EEECCSTTTTTEEEEEECT
T ss_pred             EEEcCCCCCCCEEEEECCC
Confidence            999   6788888776654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.04  E-value=7.3e-08  Score=82.66  Aligned_cols=218  Identities=13%  Similarity=-0.003  Sum_probs=128.0

Q ss_pred             CCCCCceEEEEEeCCCCEEEEEe--CCc--EEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977           41 DVDEIELISVSWNQDYGCFAAGT--SCG--FRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (415)
Q Consensus        41 ~~h~~~V~~l~~sp~g~~la~g~--d~~--v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i  116 (415)
                      ..+...+.+.+|||||+.||...  .+.  +.+.+......... .  ..........|++++..++.......  ...+
T Consensus        35 ~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~spdg~~i~~~~~~~~--~~~~  109 (269)
T d2hqsa1          35 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-A--SFPRHNGAPAFSPDGSKLAFALSKTG--SLNL  109 (269)
T ss_dssp             EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEE-E--CCSSCEEEEEECTTSSEEEEEECTTS--SCEE
T ss_pred             ecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEE-e--eeecccccceecCCCCeeeEeeecCC--ccce
Confidence            34566788999999999999776  333  44555554333222 2  44555667788998866655333210  1233


Q ss_pred             EEEECCCCCEEEEEEccCceeEEEEcCCeEEEE----eC--CeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEE
Q 014977          117 IIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV----LE--HKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLA  190 (415)
Q Consensus       117 ~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~----~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  190 (415)
                      ..+.....................+++++..+.    .+  ..|.+.++..+.... +....  .......+++++..++
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~-~~~~~--~~~~~~~~spdg~~~~  186 (269)
T d2hqsa1         110 YVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR-ITWEG--SQNQDADVSSDGKFMV  186 (269)
T ss_dssp             EEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-CCCSS--SEEEEEEECTTSSEEE
T ss_pred             eecccccccceeeeeccccccccccccccccceecccccCCceEeeeeccccccee-eeccc--ccccccccccccceeE
Confidence            344434444333333444445556666554443    23  356667766554332 22222  2444556677777777


Q ss_pred             EeCCccCeEEEEEc--CCcceEEEecCccceEEEEeCCCCCEEEEEeCC---CcEEEEEECCCCcEEEEEecCCCcccEE
Q 014977          191 CPGLQRGQVRIEHF--GLNMIKLINAHDSHIACFTLTLDGLLLATASTR---GTLIRIFNTVDGTRLQEVRRGVDRAEIY  265 (415)
Q Consensus       191 ~~g~~dg~v~i~~~--~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d---g~~I~vwd~~~~~~~~~~~~~~~~~~v~  265 (415)
                      +.....+...++..  ..... .+..+........|+|||+.|+..+..   .. |+++++..+.. ..+..  ..+.+.
T Consensus       187 ~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~-l~~~~~dg~~~-~~lt~--~~g~~~  261 (269)
T d2hqsa1         187 MVSSNGGQQHIAKQDLATGGV-QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSV-LNLVSTDGRFK-ARLPA--TDGQVK  261 (269)
T ss_dssp             EEEECSSCEEEEEEETTTCCE-EECCCSSSCEEEEECTTSSEEEEEEEETTEEE-EEEEETTSCCE-EECCC--SSSEEE
T ss_pred             EEeecCCceeeeEeecccccc-eEeecCccccceEECCCCCEEEEEEcCCCCcE-EEEEECCCCCE-EEEeC--CCCcEE
Confidence            76656666666433  33333 444556667788999999988765543   34 88999976654 45554  456788


Q ss_pred             EEEeCC
Q 014977          266 SIALSP  271 (415)
Q Consensus       266 ~l~~sp  271 (415)
                      ..+|||
T Consensus       262 ~p~WSP  267 (269)
T d2hqsa1         262 FPAWSP  267 (269)
T ss_dssp             EEEECC
T ss_pred             eEEeCC
Confidence            899998

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.04  E-value=8.6e-09  Score=93.24  Aligned_cols=199  Identities=7%  Similarity=-0.057  Sum_probs=122.2

Q ss_pred             EEEEEeCCCCEEEEEe--CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCC
Q 014977           48 ISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR  125 (415)
Q Consensus        48 ~~l~~sp~g~~la~g~--d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~  125 (415)
                      ..++|+|||++|+++.  ++.+.+||+.+.+.......+... .+   ...... .++..+.|     +.+.++++....
T Consensus       127 ~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~-~~---~~~~~~-~~v~~~~D-----g~~~~~~~~~~~  196 (368)
T d1mdah_         127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCF-HI---HPGAAA-THYLGSCP-----ASLAASDLAAAP  196 (368)
T ss_dssp             TSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCC-CC---EEEETT-EEECCCCT-----TSCEEEECCSSC
T ss_pred             cceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcc-eE---ccCCCc-eEEEEcCC-----CCEEEEEecCCc
Confidence            3589999999998876  789999999987665554432211 11   112222 23334444     888888866554


Q ss_pred             EEEEEE-------ccCceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEecc------------CCCcceEEEecCCC
Q 014977          126 CIGEFA-------FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETL------------ANLRGLCCLSHHSS  185 (415)
Q Consensus       126 ~~~~~~-------~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~------------~~~~~~~~~~~~~~  185 (415)
                      ......       +...+....+.+++..+. .++.++++++...+........            ......+.++++..
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~  276 (368)
T d1mdah_         197 AAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTD  276 (368)
T ss_dssp             CCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTT
T ss_pred             eeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCC
Confidence            332221       234456678888888887 6788888887655433221110            01123455666554


Q ss_pred             ceEEEEeCC------ccCeEEEEEcCC-cceEEEecCccceEEEEeCCCCC-E-EEEEeCCCcEEEEEECCCCcEEEEEe
Q 014977          186 TSVLACPGL------QRGQVRIEHFGL-NMIKLINAHDSHIACFTLTLDGL-L-LATASTRGTLIRIFNTVDGTRLQEVR  256 (415)
Q Consensus       186 ~~~l~~~g~------~dg~v~i~~~~~-~~~~~~~~~~~~i~~l~~sp~g~-~-l~s~s~dg~~I~vwd~~~~~~~~~~~  256 (415)
                      ..+++....      ....|.+|+... +.+..+. +...+..++|+|||+ + ++++..++. |++||..+++.+..+.
T Consensus       277 ~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~-v~v~D~~tgk~~~~i~  354 (368)
T d1mdah_         277 GIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEV-LDIYDAASDQDQSSVE  354 (368)
T ss_dssp             EEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE-EEEEECEEEECCSSSCEEEEEETTTTE-EEEEESSSCEEEEECC
T ss_pred             EEEEEecCCCceeecCCceEEEEECCCCcEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCe-EEEEECCCCCEEEEEE
Confidence            433332111      123466766554 4444443 446788999999997 3 456677888 9999999999999988


Q ss_pred             cC
Q 014977          257 RG  258 (415)
Q Consensus       257 ~~  258 (415)
                      .+
T Consensus       355 ~g  356 (368)
T d1mdah_         355 LD  356 (368)
T ss_dssp             CC
T ss_pred             CC
Confidence            53

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.99  E-value=1.6e-09  Score=101.64  Aligned_cols=154  Identities=14%  Similarity=0.015  Sum_probs=112.4

Q ss_pred             eeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEeccC---CCcceEEEecCCCceEEEEeC--------CccCeEEEEE
Q 014977          136 VRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETLA---NLRGLCCLSHHSSTSVLACPG--------LQRGQVRIEH  203 (415)
Q Consensus       136 i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~g--------~~dg~v~i~~  203 (415)
                      -..+.|.+++.++. .++.+.+||+.+++....+..+.   ....+..+.++|++++|+++.        +.++.+.+|+
T Consensus        19 ~~~~~W~~d~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d   98 (470)
T d2bgra1          19 LYSLRWISDHEYLYKQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD   98 (470)
T ss_dssp             CCCCEECSSSEEEEESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             ccCCEeCCCCEEEEEcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence            34578999998888 78899999999998766554332   112455666777788887642        3356788899


Q ss_pred             cCCcceEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCC----------------CcccEEEE
Q 014977          204 FGLNMIKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGV----------------DRAEIYSI  267 (415)
Q Consensus       204 ~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~----------------~~~~v~~l  267 (415)
                      .....+..+..+...+..+.|||||+.||... ++. +++|+..+++..+....+.                ..+....+
T Consensus        99 ~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~-l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~  176 (470)
T d2bgra1          99 LNKRQLITEERIPNNTQWVTWSPVGHKLAYVW-NND-IYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSAL  176 (470)
T ss_dssp             TTTTEECCSSCCCTTEEEEEECSSTTCEEEEE-TTE-EEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCE
T ss_pred             CCCCcccccccCCccccccccccCcceeeEee-ccc-ceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCcccc
Confidence            99888888889999999999999999999865 566 9999998887665433210                01223557


Q ss_pred             EeCCCCCEEEEEeCCCe-EEEEEce
Q 014977          268 ALSPNVQWLAVASDKGT-VHIFSLR  291 (415)
Q Consensus       268 ~~spdg~~l~s~s~dg~-i~vwd~~  291 (415)
                      .|||||++|+....|.+ +..|.+.
T Consensus       177 ~wSPDGk~ia~~~~d~~~v~~~~~~  201 (470)
T d2bgra1         177 WWSPNGTFLAYAQFNDTEVPLIEYS  201 (470)
T ss_dssp             EECTTSSEEEEEEEECTTCCEEEEE
T ss_pred             EECCCCCccceeEecCCcCceEEEE
Confidence            89999999998876543 5555544

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.97  E-value=5.6e-07  Score=77.74  Aligned_cols=190  Identities=13%  Similarity=0.151  Sum_probs=128.1

Q ss_pred             eEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEcc-------CceeEEEEcCC-eEEEE----eCCeEEE
Q 014977           89 RIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFR-------SDVRSVKLSRD-RIVVV----LEHKIYV  156 (415)
Q Consensus        89 ~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~-------~~i~~l~~~~~-~~~~~----~d~~i~i  156 (415)
                      ....++.++++.++++....     +.|++|| .+|+.+..+...       .....+.+..+ +..++    .++.|.+
T Consensus        24 ~P~gvavd~dg~i~VaD~~n-----~rI~v~d-~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~   97 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNN-----HRIQIFD-KEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI   97 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGG-----TEEEEEC-TTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred             CccEEEEcCCCCEEEEECCC-----CEEEEEe-CCCCEEEEecccCCCcccccccccccccccccccceeccCCcccccc
Confidence            35678888888777775544     8999999 458888777421       12344554433 33333    3567777


Q ss_pred             EEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEe--cCccceEEEEeCCCCCEEEEE
Q 014977          157 YSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLIN--AHDSHIACFTLTLDGLLLATA  234 (415)
Q Consensus       157 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~--~~~~~i~~l~~sp~g~~l~s~  234 (415)
                      ++. +++....+.... ......++.++++.++++ ....+.+.+++.+++.+..+.  .+......+++.++|+++++.
T Consensus        98 ~~~-~g~~~~~~~~~~-~~~p~~~avd~~G~i~v~-~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d  174 (279)
T d1q7fa_          98 YNQ-YGQFVRKFGATI-LQHPRGVTVDNKGRIIVV-ECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISD  174 (279)
T ss_dssp             ECT-TSCEEEEECTTT-CSCEEEEEECTTSCEEEE-ETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEE
T ss_pred             ccc-cccceeecCCCc-ccccceeccccCCcEEEE-eeccceeeEeccCCceeecccccccccccceeeeccceeEEeee
Confidence            774 556655553221 124456666777777665 345667777877877776653  345677889999999988888


Q ss_pred             eCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeC-CCeEEEEE
Q 014977          235 STRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASD-KGTVHIFS  289 (415)
Q Consensus       235 s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~-dg~i~vwd  289 (415)
                      ...+. |++||. +|+.+..+...........|+++++|+++++-.. ++.|.+|+
T Consensus       175 ~~~~~-V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~  228 (279)
T d1q7fa_         175 NRAHC-VKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT  228 (279)
T ss_dssp             GGGTE-EEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC
T ss_pred             ccccc-eeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC
Confidence            88888 999996 7788877753223446789999999997776544 45788887

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.92  E-value=4.3e-06  Score=73.46  Aligned_cols=197  Identities=13%  Similarity=0.054  Sum_probs=122.5

Q ss_pred             EEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE-e------CCeEEEEEcCCc
Q 014977           91 VEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-L------EHKIYVYSFVDL  162 (415)
Q Consensus        91 ~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~-~------d~~i~iwd~~~~  162 (415)
                      -.+.|++++.++++....     +.|..|+...++....+. .......++++++|.+++ .      .+.+...+....
T Consensus        43 EG~~~D~~G~Ly~~D~~~-----g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~  117 (319)
T d2dg1a1          43 EGLNFDRQGQLFLLDVFE-----GNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD  117 (319)
T ss_dssp             EEEEECTTSCEEEEETTT-----CEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred             EeCEECCCCCEEEEECCC-----CEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCc
Confidence            457788887766665544     889999987776655554 566788999999998776 2      234555555544


Q ss_pred             eeeeEEeccCCCcceEEEecCCCceEEEEeCC-----ccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEE-eC
Q 014977          163 KLLHQIETLANLRGLCCLSHHSSTSVLACPGL-----QRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATA-ST  236 (415)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-----~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~-s~  236 (415)
                      .................+..++++.+.+....     ..+.+...+..++.+..+...-...+.|+|+|+++.|+.+ +.
T Consensus       118 ~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~  197 (319)
T d2dg1a1         118 NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETT  197 (319)
T ss_dssp             SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGG
T ss_pred             eeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEeccc
Confidence            44333332222234455667777776554211     1123444445555555554444556789999999866555 45


Q ss_pred             CCcEEEEEECCCC-cEEEEE-----ecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecc
Q 014977          237 RGTLIRIFNTVDG-TRLQEV-----RRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRV  294 (415)
Q Consensus       237 dg~~I~vwd~~~~-~~~~~~-----~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~  294 (415)
                      .+. |+.||+... ......     ...........|++.++|++.++....+.|.+|+- .++
T Consensus       198 ~~~-I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~  259 (319)
T d2dg1a1         198 ANR-LHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGY  259 (319)
T ss_dssp             GTE-EEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSC
T ss_pred             CCc-eEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCc
Confidence            667 999997632 211111     11001224678999999998888888999999994 454

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.92  E-value=9.1e-07  Score=79.57  Aligned_cols=228  Identities=13%  Similarity=0.092  Sum_probs=125.3

Q ss_pred             EEEEEe---CCcEEEEEccCCceeE--EEec-cCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCC-CEEEEE
Q 014977           58 CFAAGT---SCGFRIYNCEPFKETF--RRDL-KSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQS-RCIGEF  130 (415)
Q Consensus        58 ~la~g~---d~~v~iw~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~-~~~~~~  130 (415)
                      .|.+|+   .+.|.++.++.....+  .... -.....+.-+.+++++..+.....      +.+..|.+... ......
T Consensus         4 ~l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~------~~~~~~~i~~~~~~~~~~   77 (365)
T d1jofa_           4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM------KKWSSFAVKSPTEIVHEA   77 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB------TEEEEEEEEETTEEEEEE
T ss_pred             EEEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC------CcEEEEEEeCCCCeEEEe
Confidence            356665   5567766665432222  1111 123333445778988876655544      67777766543 333222


Q ss_pred             E--ccCceeEEEEcCCeEE--EE----eCCeEEEEEcCC-ceee------------eEEe--ccCCCcceEEEecCCCce
Q 014977          131 A--FRSDVRSVKLSRDRIV--VV----LEHKIYVYSFVD-LKLL------------HQIE--TLANLRGLCCLSHHSSTS  187 (415)
Q Consensus       131 ~--~~~~i~~l~~~~~~~~--~~----~d~~i~iwd~~~-~~~~------------~~~~--~~~~~~~~~~~~~~~~~~  187 (415)
                      .  .......+.++++++.  ++    ..+.+..+.+.. +...            ....  ..........+.++|+++
T Consensus        78 ~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~  157 (365)
T d1jofa_          78 SHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTET  157 (365)
T ss_dssp             EEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSS
T ss_pred             eecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCC
Confidence            2  3455667788888874  33    245565554421 1111            1110  011122345677788888


Q ss_pred             EEEEeCCccCeEEEEEcCC--cce--EEEe--cCccceEEEEeCCCCCEEEEEeC-CCcEEEEEECCCCcEE--EEEec-
Q 014977          188 VLACPGLQRGQVRIEHFGL--NMI--KLIN--AHDSHIACFTLTLDGLLLATAST-RGTLIRIFNTVDGTRL--QEVRR-  257 (415)
Q Consensus       188 ~l~~~g~~dg~v~i~~~~~--~~~--~~~~--~~~~~i~~l~~sp~g~~l~s~s~-dg~~I~vwd~~~~~~~--~~~~~-  257 (415)
                      +++++......|.++....  ...  ....  ........++|+|+|+++++..+ ++. |.+|++..++..  ..... 
T Consensus       158 ~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~-V~v~~~~~~~~~~~~~~~~~  236 (365)
T d1jofa_         158 YLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNR-ICEYVIDPATHMPVYTHHSF  236 (365)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTE-EEEEEECTTTCCEEEEEEEE
T ss_pred             EEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCE-EEEEEecCCCceEEEEeeee
Confidence            8777655566777754332  221  1122  23456789999999998877665 455 999998765422  22110 


Q ss_pred             --------------CCCcccEEEEEeCCCCCEEEEEeC------CCeEEEEEcee
Q 014977          258 --------------GVDRAEIYSIALSPNVQWLAVASD------KGTVHIFSLRV  292 (415)
Q Consensus       258 --------------~~~~~~v~~l~~spdg~~l~s~s~------dg~i~vwd~~~  292 (415)
                                    .........+.++|||++|+++..      .+.|..|++..
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~  291 (365)
T d1jofa_         237 PLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRD  291 (365)
T ss_dssp             ESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECT
T ss_pred             ccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecC
Confidence                          001124567899999999987642      12366666554

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.92  E-value=3.9e-06  Score=73.80  Aligned_cols=244  Identities=9%  Similarity=-0.009  Sum_probs=149.9

Q ss_pred             CCceEEEEEeCCCCEEEEEe-CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECC
Q 014977           44 EIELISVSWNQDYGCFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDH  122 (415)
Q Consensus        44 ~~~V~~l~~sp~g~~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~  122 (415)
                      ...+..++|.++|+++++.. .+.|..|+.++....... . ........+++.+++.++++...+. ...+.+...+..
T Consensus        39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~-~-~~~~~p~gla~~~dG~l~va~~~~~-~~~~~i~~~~~~  115 (319)
T d2dg1a1          39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF-V-SHKANPAAIKIHKDGRLFVCYLGDF-KSTGGIFAATEN  115 (319)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE-E-CSSSSEEEEEECTTSCEEEEECTTS-SSCCEEEEECTT
T ss_pred             CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEE-e-CCCCCeeEEEECCCCCEEEEecCCC-ccceeEEEEcCC
Confidence            33457899999999777665 887877777654322221 1 3444567888999987776643210 012456666655


Q ss_pred             CCCEEEEEEc---cCceeEEEEcCCeEEEEe---------CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEE
Q 014977          123 QSRCIGEFAF---RSDVRSVKLSRDRIVVVL---------EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLA  190 (415)
Q Consensus       123 ~~~~~~~~~~---~~~i~~l~~~~~~~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  190 (415)
                      .+........   ......+.+.++|.+.+.         .+.++.++... +.+..+.....  ....+.+++++..|.
T Consensus       116 ~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg-~~~~~~~~~~~--~pnGia~s~dg~~ly  192 (319)
T d2dg1a1         116 GDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF-RTVTPIIQNIS--VANGIALSTDEKVLW  192 (319)
T ss_dssp             SCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS-CCEEEEEEEES--SEEEEEECTTSSEEE
T ss_pred             CceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEeccc-ceeEEEeeccc--eeeeeeeccccceEE
Confidence            5555444442   345788999999987772         23455555433 33333322211  234566666666665


Q ss_pred             EeCCccCeEEEEEcCC--cceEEE-------ecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCC--
Q 014977          191 CPGLQRGQVRIEHFGL--NMIKLI-------NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGV--  259 (415)
Q Consensus       191 ~~g~~dg~v~i~~~~~--~~~~~~-------~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~--  259 (415)
                      ++.+..+.|..++...  ......       .........|++.++|++.++....+. |.+|| ..|+.+.++....  
T Consensus       193 vad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~-V~~~~-p~G~~l~~i~~P~~~  270 (319)
T d2dg1a1         193 VTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGR-VLVFN-KRGYPIGQILIPGRD  270 (319)
T ss_dssp             EEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTE-EEEEC-TTSCEEEEEECTTGG
T ss_pred             EecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCE-EEEEC-CCCcEEEEEeCCCcC
Confidence            5556678888765542  221111       111223567999999998888888888 99999 4899988886431  


Q ss_pred             --CcccEEEEEeCCCCCEEEEEeCC----CeEEEEEceeccc
Q 014977          260 --DRAEIYSIALSPNVQWLAVASDK----GTVHIFSLRVRVV  295 (415)
Q Consensus       260 --~~~~v~~l~~spdg~~l~s~s~d----g~i~vwd~~~~~~  295 (415)
                        +...+++++|.+++..+++.+.+    +.-.||.++.+-+
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~~~~~  312 (319)
T d2dg1a1         271 EGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGFAK  312 (319)
T ss_dssp             GTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECSSC
T ss_pred             CCcCceeeeEEEeCCCCEEEEEcCCCCcCCceeEEEEeCCCc
Confidence              22357899999988777665532    3455666655543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.85  E-value=1.9e-06  Score=75.62  Aligned_cols=238  Identities=9%  Similarity=0.044  Sum_probs=139.1

Q ss_pred             CceEEEEEeCCCCEEEEEe--------CCcEEEEEccCCceeEEEecc--CCCeeEEEEeeeCCeEEEEecCCCCCCCCC
Q 014977           45 IELISVSWNQDYGCFAAGT--------SCGFRIYNCEPFKETFRRDLK--SGGFRIVEMLFRCNILALVGAGDNSQYPPT  114 (415)
Q Consensus        45 ~~V~~l~~sp~g~~la~g~--------d~~v~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~  114 (415)
                      .....++|.++|+++++..        ++.|..|+.++..........  ........+.+.+++..++.+...     +
T Consensus        18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~-----~   92 (314)
T d1pjxa_          18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR-----L   92 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT-----T
T ss_pred             CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECC-----C
Confidence            3456789999999887643        355777777664433322110  111224568888887433333332     6


Q ss_pred             eEEEEECCCCCEEEEEE--cc----CceeEEEEcCCeEEEEeC------------------CeEEEEEcCCceeeeEEec
Q 014977          115 KVIIWDDHQSRCIGEFA--FR----SDVRSVKLSRDRIVVVLE------------------HKIYVYSFVDLKLLHQIET  170 (415)
Q Consensus       115 ~i~vwd~~~~~~~~~~~--~~----~~i~~l~~~~~~~~~~~d------------------~~i~iwd~~~~~~~~~~~~  170 (415)
                      .|...+...+. ...+.  ..    ...+++++.++|.+.+.|                  +.|+.++. +++.......
T Consensus        93 ~i~~~~~~g~~-~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~~~~~  170 (314)
T d1pjxa_          93 GLLVVQTDGTF-EEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQVDTA  170 (314)
T ss_dssp             EEEEEETTSCE-EECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEEEEEE
T ss_pred             eEEEEeCCCcE-EEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee-cCceeEeeCC
Confidence            68888865443 22222  11    135789999998877621                  24554543 3443332222


Q ss_pred             cCCCcceEEEecCCCc--eEEEEeCCccCeEEEEEcCCc-ceE---EE---ec-CccceEEEEeCCCCCEEEEEeCCCcE
Q 014977          171 LANLRGLCCLSHHSST--SVLACPGLQRGQVRIEHFGLN-MIK---LI---NA-HDSHIACFTLTLDGLLLATASTRGTL  240 (415)
Q Consensus       171 ~~~~~~~~~~~~~~~~--~~l~~~g~~dg~v~i~~~~~~-~~~---~~---~~-~~~~i~~l~~sp~g~~l~s~s~dg~~  240 (415)
                      -.. ..-+++.++.++  ..|.++.+..+.|..++.... .+.   .+   .. +......+++..+|++.++....+. 
T Consensus       171 ~~~-pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~-  248 (314)
T d1pjxa_         171 FQF-PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH-  248 (314)
T ss_dssp             ESS-EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE-
T ss_pred             cce-eeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCE-
Confidence            111 133556655442  244444556777776443321 111   11   11 1234567999999998887777788 


Q ss_pred             EEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEE-EEEeCCCeEEEEEceec
Q 014977          241 IRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWL-AVASDKGTVHIFSLRVR  293 (415)
Q Consensus       241 I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l-~s~s~dg~i~vwd~~~~  293 (415)
                      |.+||...++.+..+..  ....+++++|.||++.| ++.+.+|.|..+++...
T Consensus       249 I~~~dp~~g~~~~~i~~--p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~  300 (314)
T d1pjxa_         249 IEVFGPDGGQPKMRIRC--PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             EEEECTTCBSCSEEEEC--SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             EEEEeCCCCEEEEEEEC--CCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCC
Confidence            99999887877666665  33468899999999755 55566787766666443

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.84  E-value=5.7e-06  Score=71.80  Aligned_cols=214  Identities=7%  Similarity=0.030  Sum_probs=140.1

Q ss_pred             EEEEEeCCCCEEEEEe--CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCC
Q 014977           48 ISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR  125 (415)
Q Consensus        48 ~~l~~sp~g~~la~g~--d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~  125 (415)
                      -+..|.+....|.-..  .+.|.-|+.++..... ..+   ...+..+.+..++.++++..       ..|.++|..+++
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~-~~~---~~~~~~i~~~~dg~l~va~~-------~gl~~~d~~tg~   89 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKTV-HAL---PFMGSALAKISDSKQLIASD-------DGLFLRDTATGV   89 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EEC---SSCEEEEEEEETTEEEEEET-------TEEEEEETTTCC
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEE-EEC---CCCcEEEEEecCCCEEEEEe-------CccEEeecccce
Confidence            4567887555444444  7888889988754432 223   33455677778887777653       568999999888


Q ss_pred             EEEEEEc-----cCceeEEEEcCCeEEEEe-------CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeC
Q 014977          126 CIGEFAF-----RSDVRSVKLSRDRIVVVL-------EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPG  193 (415)
Q Consensus       126 ~~~~~~~-----~~~i~~l~~~~~~~~~~~-------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  193 (415)
                      .......     ...++++.+.++|.+.+.       .+.-.+|.+.+++.........   ....+.+++++..+.++.
T Consensus        90 ~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~---~~Ng~~~s~d~~~l~~~d  166 (295)
T d2ghsa1          90 LTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADIS---IPNSICFSPDGTTGYFVD  166 (295)
T ss_dssp             EEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEES---SEEEEEECTTSCEEEEEE
T ss_pred             eeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccC---CcceeeecCCCceEEEee
Confidence            6544431     235788999999988771       2345667666666554443322   233455556666565556


Q ss_pred             CccCeEEEEEcCCc------ceEE---EecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccE
Q 014977          194 LQRGQVRIEHFGLN------MIKL---INAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEI  264 (415)
Q Consensus       194 ~~dg~v~i~~~~~~------~~~~---~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v  264 (415)
                      +..+.|..++.+..      ....   +.........+++..+|++.++.-..+. |..|| .+|+.+..+...  ...+
T Consensus       167 t~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~-V~~~d-p~G~~~~~i~lP--~~~~  242 (295)
T d2ghsa1         167 TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGA-VDRYD-TDGNHIARYEVP--GKQT  242 (295)
T ss_dssp             TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTE-EEEEC-TTCCEEEEEECS--CSBE
T ss_pred             cccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCc-eEEec-CCCcEeeEecCC--CCce
Confidence            67788887654421      1111   1233456788999999997777767788 99999 579999888763  3468


Q ss_pred             EEEEeC-CCCCEEEEE
Q 014977          265 YSIALS-PNVQWLAVA  279 (415)
Q Consensus       265 ~~l~~s-pdg~~l~s~  279 (415)
                      ++++|- +|.+.|+..
T Consensus       243 T~~~FGG~d~~~LyvT  258 (295)
T d2ghsa1         243 TCPAFIGPDASRLLVT  258 (295)
T ss_dssp             EEEEEESTTSCEEEEE
T ss_pred             EEEEEeCCCCCEEEEE
Confidence            999995 676666543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.84  E-value=1.3e-05  Score=69.44  Aligned_cols=206  Identities=11%  Similarity=-0.011  Sum_probs=134.3

Q ss_pred             CeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEecc--CCCcceEEEecCCCceEEE
Q 014977          114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETL--ANLRGLCCLSHHSSTSVLA  190 (415)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~  190 (415)
                      +.|..||.++++. ..+.....+.++.+.+++.+++ ....+.++|..+++........  ........+..+++|.+.+
T Consensus        40 ~~I~r~d~~~g~~-~~~~~~~~~~~i~~~~dg~l~va~~~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~  118 (295)
T d2ghsa1          40 RELHELHLASGRK-TVHALPFMGSALAKISDSKQLIASDDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWI  118 (295)
T ss_dssp             TEEEEEETTTTEE-EEEECSSCEEEEEEEETTEEEEEETTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEE
T ss_pred             CEEEEEECCCCeE-EEEECCCCcEEEEEecCCCEEEEEeCccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEE
Confidence            8899999887754 4566777889999999888777 6778999999888754433221  2222456667788887665


Q ss_pred             EeCC---ccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEe-CCCcEEEEEECCC------CcEEEEEecCCC
Q 014977          191 CPGL---QRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATAS-TRGTLIRIFNTVD------GTRLQEVRRGVD  260 (415)
Q Consensus       191 ~~g~---~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s-~dg~~I~vwd~~~------~~~~~~~~~~~~  260 (415)
                      .+..   ..+.-.++......+..+...-...+.++|+++++.+..+. ..+. |..|++..      ++....+.....
T Consensus       119 ~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~-I~~~~~d~~~~~~~~~~~~~~~~~~~  197 (295)
T d2ghsa1         119 GTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNR-LMRVPLDARTGLPTGKAEVFIDSTGI  197 (295)
T ss_dssp             EEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCE-EEEEEBCTTTCCBSSCCEEEEECTTS
T ss_pred             EeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccce-eeEeeecccccccccceEEEeccCcc
Confidence            4321   11222333222233333333344567899999998766554 4556 98888742      122212222113


Q ss_pred             cccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCccccccc
Q 014977          261 RAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRG  340 (415)
Q Consensus       261 ~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (415)
                      .+....+++..+|++.++.-..+.|..||- .++.                                             
T Consensus       198 ~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~---------------------------------------------  231 (295)
T d2ghsa1         198 KGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNH---------------------------------------------  231 (295)
T ss_dssp             SSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCE---------------------------------------------
T ss_pred             cccccceEEcCCCCEEeeeeCCCceEEecC-CCcE---------------------------------------------
Confidence            456789999999998877777888999984 3442                                             


Q ss_pred             ccCcccccccceEEEEeCCCceEEEEec-CC-CEEEEEEe
Q 014977          341 VLPKYFSSEWSFAQFHIPEVTHFIAAFG-SQ-NTVVIVSM  378 (415)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~i~~~~~  378 (415)
                                 ...+++|....+.|+|. ++ +.|++++.
T Consensus       232 -----------~~~i~lP~~~~T~~~FGG~d~~~LyvTta  260 (295)
T d2ghsa1         232 -----------IARYEVPGKQTTCPAFIGPDASRLLVTSA  260 (295)
T ss_dssp             -----------EEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             -----------eeEecCCCCceEEEEEeCCCCCEEEEEEC
Confidence                       24678887778888996 45 88888876

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.74  E-value=4e-05  Score=64.37  Aligned_cols=221  Identities=13%  Similarity=0.148  Sum_probs=150.9

Q ss_pred             CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcC
Q 014977           64 SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSR  143 (415)
Q Consensus        64 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~  143 (415)
                      ...|.|.|+.......++.. .....+    .+|....++--+.      ..+.++|+++.+.++.+.....|.--.|-.
T Consensus        44 ~~~VvIidl~n~~~~~Rrpi-~AdsAI----MhP~~~IiALrag------~~LQiFnletK~klks~~~~e~VvfWkWis  112 (327)
T d1utca2          44 QAQVVIIDMNDPSNPIRRPI-SADSAI----MNPASKVIALKAG------KTLQIFNIEMKSKMKAHTMTDDVTFWKWIS  112 (327)
T ss_dssp             EEEEEEEETTSTTSCEEEEC-CCSEEE----ECSSSSEEEEEET------TEEEEEETTTTEEEEEEECSSCCCEEEESS
T ss_pred             CceEEEEECCCCCcceeccc-chhhhh----cCCCCcEEEEecC------CeEEEEehhHhhhhceEEcCCCcEEEEecC
Confidence            44688889976665566554 333333    2455444443332      799999999999999999888888888866


Q ss_pred             CeEEE-EeCCeEEEEEcCC-ceeeeEEeccC--CCcceEEEecCCCceEEEEeC------CccCeEEEEEcCCcceEEEe
Q 014977          144 DRIVV-VLEHKIYVYSFVD-LKLLHQIETLA--NLRGLCCLSHHSSTSVLACPG------LQRGQVRIEHFGLNMIKLIN  213 (415)
Q Consensus       144 ~~~~~-~~d~~i~iwd~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~g------~~dg~v~i~~~~~~~~~~~~  213 (415)
                      +..+. +.+..|+-|+++. ..+.+.++.|.  ....++.+..+++.++++..|      .-.|.+.++....+.-+.++
T Consensus       113 ~~~L~lVT~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ie  192 (327)
T d1utca2         113 LNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIE  192 (327)
T ss_dssp             SSEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEEC
T ss_pred             CCEEEEEcCCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCcccc
Confidence            55554 4899999999943 34566665443  234677888888888887655      23467888999999999999


Q ss_pred             cCccceEEEEeCCCC---CEEEEEeC--C-CcEEEEEECCCCc--------EEEEEe--cCCCcccEEEEEeCCCCCEEE
Q 014977          214 AHDSHIACFTLTLDG---LLLATAST--R-GTLIRIFNTVDGT--------RLQEVR--RGVDRAEIYSIALSPNVQWLA  277 (415)
Q Consensus       214 ~~~~~i~~l~~sp~g---~~l~s~s~--d-g~~I~vwd~~~~~--------~~~~~~--~~~~~~~v~~l~~spdg~~l~  277 (415)
                      +|.+....+.+.-+.   .+++.+..  . +. ++|.++....        ....+.  ......-..++..++.-..+.
T Consensus       193 Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~~~k-LhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiy  271 (327)
T d1utca2         193 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGK-LHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVF  271 (327)
T ss_dssp             CSEEEEEEECCTTCSSCEEEEEEEEEETTEEE-EEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEE
T ss_pred             ceeeeeEEEEcCCCCCCceEEEEEECCCCCcE-EEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEE
Confidence            998877777664332   24443332  2 45 8888875421        111121  111123456788888888999


Q ss_pred             EEeCCCeEEEEEceecccC
Q 014977          278 VASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       278 s~s~dg~i~vwd~~~~~~~  296 (415)
                      ..+.-|.|++||++++.+.
T Consensus       272 viTK~G~i~lyDleTgt~i  290 (327)
T d1utca2         272 LITKYGYIHLYDLETGTCI  290 (327)
T ss_dssp             EEETTSEEEEEETTTCCEE
T ss_pred             EEecCcEEEEEEcccccEE
Confidence            9999999999999999853

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.73  E-value=9.8e-06  Score=70.92  Aligned_cols=238  Identities=8%  Similarity=0.032  Sum_probs=139.7

Q ss_pred             EEeeeCCeEEEEecCCC--CCCCCCeEEEEECCCCCEEEEEE-----ccCceeEEEEcCCeEE-EE--eCCeEEEEEcCC
Q 014977           92 EMLFRCNILALVGAGDN--SQYPPTKVIIWDDHQSRCIGEFA-----FRSDVRSVKLSRDRIV-VV--LEHKIYVYSFVD  161 (415)
Q Consensus        92 ~~~~~~~~~~l~s~~~d--~~~~~~~i~vwd~~~~~~~~~~~-----~~~~i~~l~~~~~~~~-~~--~d~~i~iwd~~~  161 (415)
                      .++|++++.++++....  .....+.|..||..++.......     .......+.|.+++.. ++  ..+.|..++...
T Consensus        22 Gpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g  101 (314)
T d1pjxa_          22 GPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDG  101 (314)
T ss_dssp             EEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETTS
T ss_pred             EeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeCCC
Confidence            45678888766653321  00123679999988876544332     1234678999998754 33  346688888755


Q ss_pred             ceeeeEEeccCCC--c-ceEEEecCCCceEEEEeCC--------------ccCeEEEEEcCCcceEEEecCccceEEEEe
Q 014977          162 LKLLHQIETLANL--R-GLCCLSHHSSTSVLACPGL--------------QRGQVRIEHFGLNMIKLINAHDSHIACFTL  224 (415)
Q Consensus       162 ~~~~~~~~~~~~~--~-~~~~~~~~~~~~~l~~~g~--------------~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~  224 (415)
                      .... .+......  . ....+..++++.+.++...              ..|.|..++.+++.... ...-...+.++|
T Consensus       102 ~~~~-~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~-~~~~~~pNGi~~  179 (314)
T d1pjxa_         102 TFEE-IAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQV-DTAFQFPNGIAV  179 (314)
T ss_dssp             CEEE-CCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEE-EEEESSEEEEEE
T ss_pred             cEEE-EEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCceeEe-eCCcceeeeeEE
Confidence            4322 22111111  1 2334556666766554211              12344444444443332 223334568899


Q ss_pred             CCCCC----EE-EEEeCCCcEEEEEECCCCcEEE------EEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceec
Q 014977          225 TLDGL----LL-ATASTRGTLIRIFNTVDGTRLQ------EVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVR  293 (415)
Q Consensus       225 sp~g~----~l-~s~s~dg~~I~vwd~~~~~~~~------~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~  293 (415)
                      +|++.    .| ++-+..+. |..||+.....+.      .+... .......|++..+|++.++....+.|.+||.+.+
T Consensus       180 ~~d~d~~~~~lyv~d~~~~~-i~~~d~~~~g~~~~~~~~~~~~~~-~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g  257 (314)
T d1pjxa_         180 RHMNDGRPYQLIVAETPTKK-LWSYDIKGPAKIENKKVWGHIPGT-HEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGG  257 (314)
T ss_dssp             EECTTSCEEEEEEEETTTTE-EEEEEEEETTEEEEEEEEEECCCC-SSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCB
T ss_pred             CCCCCcceeEEEEEeecccc-eEEeeccCccccceeeEEEEcccc-ccccceeeEEecCCcEEEEEcCCCEEEEEeCCCC
Confidence            88764    34 44456677 8888875443222      12221 2234678999999998888878899999987766


Q ss_pred             ccCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCcccccccccCcccccccceEEEEeCCCceEEEEecCC-CE
Q 014977          294 VVGEDSSSSLSTPSQSTELLNHSSSFDTLISPSTGANPGSSLSFMRGVLPKYFSSEWSFAQFHIPEVTHFIAAFGSQ-NT  372 (415)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  372 (415)
                      +..                                                        ..+.+|......++|.++ +.
T Consensus       258 ~~~--------------------------------------------------------~~i~~p~~~~t~~afg~d~~~  281 (314)
T d1pjxa_         258 QPK--------------------------------------------------------MRIRCPFEKPSNLHFKPQTKT  281 (314)
T ss_dssp             SCS--------------------------------------------------------EEEECSSSCEEEEEECTTSSE
T ss_pred             EEE--------------------------------------------------------EEEECCCCCEEEEEEeCCCCE
Confidence            522                                                        245666556677899998 56


Q ss_pred             EEEEEe-CCcEEEEEEec
Q 014977          373 VVIVSM-DGSFYRCSFDP  389 (415)
Q Consensus       373 i~~~~~-dg~~~~~~~~~  389 (415)
                      |+++.+ +|.|+.+.++.
T Consensus       282 lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         282 IFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEEETTTTEEEEEECSS
T ss_pred             EEEEECCCCcEEEEECCC
Confidence            877766 58777766644

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.71  E-value=1.7e-06  Score=75.57  Aligned_cols=191  Identities=10%  Similarity=0.004  Sum_probs=120.0

Q ss_pred             eEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE---eCCeEEEEEcCCce-e
Q 014977           89 RIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVDLK-L  164 (415)
Q Consensus        89 ~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~~~-~  164 (415)
                      .+-.+++.+++.++++...+     +.|..|+. .++..........+.+++|.+++.+++   .++.+..++..... .
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~-----~~I~~i~p-~g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~  102 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEV-----GEIVSITP-DGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT  102 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTT-----TEEEEECT-TCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC
T ss_pred             CcCCEEECCCCCEEEEeCCC-----CEEEEEeC-CCCEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccc
Confidence            45678899999998887766     89988884 455555555788899999999998777   46777777764322 1


Q ss_pred             eeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEec-----------CccceEEEEeCCCCCEEEE
Q 014977          165 LHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINA-----------HDSHIACFTLTLDGLLLAT  233 (415)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~-----------~~~~i~~l~~sp~g~~l~s  233 (415)
                      ...+...........+..++++.+++. .+.++.+..++...........           .......+.++. +.++++
T Consensus       103 ~~~~~~~~~~~~~n~i~~~~~g~~~v~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~  180 (302)
T d2p4oa1         103 VETLLTLPDAIFLNGITPLSDTQYLTA-DSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVS  180 (302)
T ss_dssp             EEEEEECTTCSCEEEEEESSSSEEEEE-ETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEE
T ss_pred             eeeccccCCccccceeEEccCCCEEee-ccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-Cceeee
Confidence            222222222234566777777777665 4456666665555433322211           112345566543 234455


Q ss_pred             EeCCCcEEEEEECCCCcEE---EEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEce
Q 014977          234 ASTRGTLIRIFNTVDGTRL---QEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLR  291 (415)
Q Consensus       234 ~s~dg~~I~vwd~~~~~~~---~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~  291 (415)
                      .+..+. |+.++.......   ..+.   .......++|+++|++.++...++.|..++..
T Consensus       181 ~~~~~~-i~~~~~~~~~~~~~~~~~~---~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~  237 (302)
T d2p4oa1         181 NTEKML-LLRIPVDSTDKPGEPEIFV---EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD  237 (302)
T ss_dssp             ETTTTE-EEEEEBCTTSCBCCCEEEE---ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred             cCCCCe-EEecccccccccccccccc---CCCCCcceEECCCCCEEEEEcCCCcEEEECCC
Confidence            566666 888887654322   1122   12245679999999988888888888887654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.67  E-value=1.9e-06  Score=73.37  Aligned_cols=194  Identities=9%  Similarity=-0.001  Sum_probs=115.5

Q ss_pred             CeeEEEEeeeCCeEEEEe-cCCCCCCCCCeEEEEECCCCCEEEE-EEccCceeEEEEcCCeEEEE---eCCeEEEEEcCC
Q 014977           87 GFRIVEMLFRCNILALVG-AGDNSQYPPTKVIIWDDHQSRCIGE-FAFRSDVRSVKLSRDRIVVV---LEHKIYVYSFVD  161 (415)
Q Consensus        87 ~~~~~~~~~~~~~~~l~s-~~~d~~~~~~~i~vwd~~~~~~~~~-~~~~~~i~~l~~~~~~~~~~---~d~~i~iwd~~~  161 (415)
                      ......+++++++.++++ ....     +.+..++......... .........+++++++.+.+   ..+.+++++-.+
T Consensus        13 ~~~P~~vavd~dG~i~v~~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~   87 (260)
T d1rwia_          13 RLSPSGVAVDSAGNVYVTSEGMY-----GRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSN   87 (260)
T ss_dssp             CCCEEEEEECTTCCEEEEECSSS-----CEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCS
T ss_pred             cCCCCEEEEcCCCCEEEEEcCCC-----CEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeecc
Confidence            345677888888775554 3443     6677766443322211 11234567889999888777   334455554444


Q ss_pred             ceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEe-cCccceEEEEeCCCCCEEEEEeCCCcE
Q 014977          162 LKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLIN-AHDSHIACFTLTLDGLLLATASTRGTL  240 (415)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~-~~~~~i~~l~~sp~g~~l~s~s~dg~~  240 (415)
                      ...+......   .....++.++++.++++ ...+..+.............. ........++++++|+++++...++. 
T Consensus        88 ~~~~~~~~~~---~~p~~iavd~~g~i~v~-d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~-  162 (260)
T d1rwia_          88 NQTVLPFDGL---NYPEGLAVDTQGAVYVA-DRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNR-  162 (260)
T ss_dssp             CCEECCCCSC---CSEEEEEECTTCCEEEE-EGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTE-
T ss_pred             ceeeeeeeee---eecccccccccceeEee-ccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccccc-
Confidence            3333222211   23456666667666654 334555555555444333322 22345578999999998888888888 


Q ss_pred             EEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEcee
Q 014977          241 IRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRV  292 (415)
Q Consensus       241 I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~  292 (415)
                      |..+|....... .+... .-.....|+++++|+++++....+.|..++...
T Consensus       163 i~~~d~~~~~~~-~~~~~-~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~  212 (260)
T d1rwia_         163 VVKLEAESNNQV-VLPFT-DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS  212 (260)
T ss_dssp             EEEECTTTCCEE-ECCCS-SCCSEEEEEECTTCCEEEEETTTTEEEEECTTC
T ss_pred             ccccccccceee-eeecc-ccCCCccceeeeeeeeeeeecCCCEEEEEeCCC
Confidence            999997654433 33221 334578999999999888887788887776543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=1.2e-06  Score=81.50  Aligned_cols=226  Identities=11%  Similarity=0.044  Sum_probs=132.9

Q ss_pred             EEeCCCCEEEEEeCCcEEEEEccCCceeEEEecc-CCCeeEEEEeeeCCeEEEEecCC-CCCC---CCCeEEEEECCCCC
Q 014977           51 SWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLK-SGGFRIVEMLFRCNILALVGAGD-NSQY---PPTKVIIWDDHQSR  125 (415)
Q Consensus        51 ~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~s~~~-d~~~---~~~~i~vwd~~~~~  125 (415)
                      .|.+++.++....+|.|.+|++.+++........ .....+....++||+..++...+ ...|   ..+.+.++|+.+++
T Consensus        23 ~W~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~  102 (465)
T d1xfda1          23 KWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGD  102 (465)
T ss_dssp             CBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCC
T ss_pred             EEeCCCcEEEEeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCc
Confidence            4778887766555889999999876553332221 12234556778998865544321 1111   23789999999887


Q ss_pred             EEEEEE---ccCceeEEEEcCCeEEEE--eCCeEEEEEcCCceeeeEEeccCCC----------------cceEEEecCC
Q 014977          126 CIGEFA---FRSDVRSVKLSRDRIVVV--LEHKIYVYSFVDLKLLHQIETLANL----------------RGLCCLSHHS  184 (415)
Q Consensus       126 ~~~~~~---~~~~i~~l~~~~~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~----------------~~~~~~~~~~  184 (415)
                      ......   ....+....|+|||..++  .++.|++.+..+++.++........                ..-.++-|+|
T Consensus       103 ~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSP  182 (465)
T d1xfda1         103 PQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP  182 (465)
T ss_dssp             CEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT
T ss_pred             eeeccCccCCccccceeeeccCCceEEEEecceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECC
Confidence            644332   234566789999999888  8999999998776655443221111                0124566788


Q ss_pred             CceEEEEeCCccCeEEE---------------------------------EEcCCcceEEEe-------cCccceEEEEe
Q 014977          185 STSVLACPGLQRGQVRI---------------------------------EHFGLNMIKLIN-------AHDSHIACFTL  224 (415)
Q Consensus       185 ~~~~l~~~g~~dg~v~i---------------------------------~~~~~~~~~~~~-------~~~~~i~~l~~  224 (415)
                      +++.||+.-..+..|..                                 .+..........       .....+..+.|
T Consensus       183 Dgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W  262 (465)
T d1xfda1         183 DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKW  262 (465)
T ss_dssp             TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEE
T ss_pred             CCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEE
Confidence            88888875322222222                                 121111111100       11223677899


Q ss_pred             CCCCCEEEEEeC-CC--cEEEEEECCCCcEEEEEecCCCcccE----EEEEeCCCCCEEE
Q 014977          225 TLDGLLLATAST-RG--TLIRIFNTVDGTRLQEVRRGVDRAEI----YSIALSPNVQWLA  277 (415)
Q Consensus       225 sp~g~~l~s~s~-dg--~~I~vwd~~~~~~~~~~~~~~~~~~v----~~l~~spdg~~l~  277 (415)
                      +|++++++.... +.  ..|.++|..+|+....+... ..+.|    ....|++||+.++
T Consensus       263 ~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~-~~~wv~~~~~~p~~~~dg~~~~  321 (465)
T d1xfda1         263 ATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE-SEAWLHRQNEEPVFSKDGRKFF  321 (465)
T ss_dssp             SSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE-CSSCCCCCCCCCEECTTSCSEE
T ss_pred             cCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEc-CCceEeccCCceeEccCCCeeE
Confidence            999986665432 22  13888999999876555431 22222    3457899998543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.52  E-value=7.4e-06  Score=69.92  Aligned_cols=232  Identities=9%  Similarity=-0.035  Sum_probs=124.8

Q ss_pred             EEeCC--CCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCC-CCCCCCCeEEEEECCCCCEE
Q 014977           51 SWNQD--YGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGD-NSQYPPTKVIIWDDHQSRCI  127 (415)
Q Consensus        51 ~~sp~--g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d~~~~~~~i~vwd~~~~~~~  127 (415)
                      ..+||  |+.+|...++.|.+.+++..+.. .  +..+........|+||+..|+.... +.......|.+++..+++..
T Consensus         5 ~~sPdi~G~~v~f~~~~dl~~~d~~~g~~~-~--Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~   81 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCCDDLWEHDLKSGSTR-K--IVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIK   81 (281)
T ss_dssp             CEEEEEETTEEEEEETTEEEEEETTTCCEE-E--EECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEE
T ss_pred             ccCCCCCCCEEEEEeCCcEEEEECCCCCEE-E--EecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceE
Confidence            46788  99999888888888888875542 2  2255666788899999977764321 10001135788887777655


Q ss_pred             EEEEc-------cCceeEEEEcCCeEEEE-e--------CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEE
Q 014977          128 GEFAF-------RSDVRSVKLSRDRIVVV-L--------EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLAC  191 (415)
Q Consensus       128 ~~~~~-------~~~i~~l~~~~~~~~~~-~--------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  191 (415)
                      +....       ........|+|+++.++ .        ...+...+...+.......   .... ..+.+ +.+..++.
T Consensus        82 ~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~-~~~~~~~~  156 (281)
T d1k32a2          82 RITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNL---GPAT-HILFA-DGRRVIGR  156 (281)
T ss_dssp             ECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCS---CSCS-EEEEE-TTEEEEEE
T ss_pred             EeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecC---Cccc-eeeec-CCCeEEEe
Confidence            43221       23456788999998887 1        2235555554443322111   1111 11121 22223322


Q ss_pred             eCCcc----------CeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEeCCC-cEEEEEECCCCcEEEEEecCCC
Q 014977          192 PGLQR----------GQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATASTRG-TLIRIFNTVDGTRLQEVRRGVD  260 (415)
Q Consensus       192 ~g~~d----------g~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg-~~I~vwd~~~~~~~~~~~~~~~  260 (415)
                      .....          ....+.............+........++++.. +.....++ ..|.++|+.+++.. .+... .
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~d~~g~~~~-~lt~~-~  233 (281)
T d1k32a2         157 NTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRI-YFITDIDGFGQIYSTDLDGKDLR-KHTSF-T  233 (281)
T ss_dssp             SCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEE-EEEECTTSSCEEEEEETTSCSCE-ECCCC-C
T ss_pred             eccccceeeeeccCCcceeeeeccccceeeccCCccccceeeeecccc-ceecccccccceEEEeCCCCceE-EeecC-C
Confidence            11111          011111122222233333444445555665532 22222222 23888898766544 34321 2


Q ss_pred             cccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977          261 RAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       261 ~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                      ...+  ..|+|||+.|+.. .++.|+++|+++++..
T Consensus       234 ~~~~--~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~  266 (281)
T d1k32a2         234 DYYP--RHLNTDGRRILFS-KGGSIYIFNPDTEKIE  266 (281)
T ss_dssp             SSCE--EEEEESSSCEEEE-ETTEEEEECTTTCCEE
T ss_pred             Cccc--ccCcCCCCEEEEE-eCCEEEEEECCCCCEE
Confidence            2233  4589999998764 4688999999888754

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=2.4e-06  Score=79.28  Aligned_cols=195  Identities=8%  Similarity=-0.027  Sum_probs=114.8

Q ss_pred             eeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE----ccCceeEEEEcCCeEEEE--e----------CCeEEEE
Q 014977           94 LFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA----FRSDVRSVKLSRDRIVVV--L----------EHKIYVY  157 (415)
Q Consensus        94 ~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~----~~~~i~~l~~~~~~~~~~--~----------d~~i~iw  157 (415)
                      .|.+++.++.. ..+     +.|.+||+.+++....+.    ....+....++||++.++  .          .+.+.++
T Consensus        23 ~W~~~~~~~~~-~~~-----g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~   96 (465)
T d1xfda1          23 KWISDTEFIYR-EQK-----GTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (465)
T ss_dssp             CBSSSSCBCCC-CSS-----SCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             EEeCCCcEEEE-eCC-----CcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEE
Confidence            45666554433 223     889999998887654444    234677889999998876  2          3678999


Q ss_pred             EcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCCcceEEEec--Ccc-----------------c
Q 014977          158 SFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINA--HDS-----------------H  218 (415)
Q Consensus       158 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~--~~~-----------------~  218 (415)
                      |+.+++.............+....++|+|..+|++  .++.|.+.+........+..  ...                 .
T Consensus        97 d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv--~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~  174 (465)
T d1xfda1          97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFI--FENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKT  174 (465)
T ss_dssp             ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEE--ETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSS
T ss_pred             EccCCceeeccCccCCccccceeeeccCCceEEEE--ecceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccc
Confidence            99887654332222222233335567777788875  46677775444333222221  111                 1


Q ss_pred             eEEEEeCCCCCEEEEEeCCCc---------------------------------EEEEEECCCCcEEEEEec-C---CCc
Q 014977          219 IACFTLTLDGLLLATASTRGT---------------------------------LIRIFNTVDGTRLQEVRR-G---VDR  261 (415)
Q Consensus       219 i~~l~~sp~g~~l~s~s~dg~---------------------------------~I~vwd~~~~~~~~~~~~-~---~~~  261 (415)
                      -.++.|||||++||....|.+                                 .+.|+|+.++........ .   ...
T Consensus       175 ~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~  254 (465)
T d1xfda1         175 HIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMRE  254 (465)
T ss_dssp             SEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSS
T ss_pred             cceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCcccc
Confidence            246789999999998653321                                 244555544432211111 0   011


Q ss_pred             ccEEEEEeCCCCCEEEEEeCC----CeEEEEEceecccC
Q 014977          262 AEIYSIALSPNVQWLAVASDK----GTVHIFSLRVRVVG  296 (415)
Q Consensus       262 ~~v~~l~~spdg~~l~s~s~d----g~i~vwd~~~~~~~  296 (415)
                      .-+..+.|++++++++.....    ..|.++|..+++..
T Consensus       255 ~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~  293 (465)
T d1xfda1         255 YYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT  293 (465)
T ss_dssp             EEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE
T ss_pred             ceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEE
Confidence            246788999999876654432    25888888887653

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.99  E-value=0.00015  Score=61.44  Aligned_cols=80  Identities=5%  Similarity=-0.060  Sum_probs=52.8

Q ss_pred             CeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE----eC-----CeEEEEEcCCceeeeEEecc----CCCcceEEE
Q 014977          114 TKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV----LE-----HKIYVYSFVDLKLLHQIETL----ANLRGLCCL  180 (415)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~----~d-----~~i~iwd~~~~~~~~~~~~~----~~~~~~~~~  180 (415)
                      +.|.+.|+..++..+...+...+....|+|||+.|+    .+     ..|++++..+++........    .........
T Consensus        21 ~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~  100 (281)
T d1k32a2          21 DDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVA  100 (281)
T ss_dssp             TEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEE
T ss_pred             CcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCcccccccc
Confidence            789999999888765545778889999999999888    12     25888888777654322111    001122345


Q ss_pred             ecCCCceEEEEeC
Q 014977          181 SHHSSTSVLACPG  193 (415)
Q Consensus       181 ~~~~~~~~l~~~g  193 (415)
                      .+++++..|+++.
T Consensus       101 ~~spdg~~l~~~~  113 (281)
T d1k32a2         101 GFDPDGNLIISTD  113 (281)
T ss_dssp             EECTTCCEEEEEC
T ss_pred             ccCCCCCEEEEEE
Confidence            5666777777653

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.76  E-value=0.002  Score=56.90  Aligned_cols=224  Identities=10%  Similarity=0.020  Sum_probs=135.2

Q ss_pred             EEEEeC---CCCEEEEEe--CCcEEEEEccCCceeEEEeccCCCeeEEE--EeeeCCeEEEEecCCCC------------
Q 014977           49 SVSWNQ---DYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVE--MLFRCNILALVGAGDNS------------  109 (415)
Q Consensus        49 ~l~~sp---~g~~la~g~--d~~v~iw~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~s~~~d~------------  109 (415)
                      .+++..   ||++|.+..  ++.|.+-|+++.+......++. ......  ....++..+++..+.+.            
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn-~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d  167 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPN-AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED  167 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSS-CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCC-CCCCceeecccCCCeEEEEccCccccccCCCCccccc
Confidence            556654   899999988  8899999999877644444422 222233  33345555555444320            


Q ss_pred             -CCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE--e---C-------------CeEEEEEc-----------
Q 014977          110 -QYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV--L---E-------------HKIYVYSF-----------  159 (415)
Q Consensus       110 -~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~---d-------------~~i~iwd~-----------  159 (415)
                       .-..+.+.++|..+.+...++........+.++++|++++  .   +             ..+.+++.           
T Consensus       168 ~~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk  247 (459)
T d1fwxa2         168 VANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD  247 (459)
T ss_dssp             GG-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred             hhhcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence             0011457789999999998888777888999999998887  1   1             12444443           


Q ss_pred             ------------CCc---eeeeEEeccCCCcceEEEecCCCceEEEEeCCccCeEEEEEcCC------------cceEEE
Q 014977          160 ------------VDL---KLLHQIETLANLRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGL------------NMIKLI  212 (415)
Q Consensus       160 ------------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~~------------~~~~~~  212 (415)
                                  .+.   ..+..+.....   ...+..+|++++++++|..+.++.+.+.+.            ..+..-
T Consensus       248 ~~eingV~VVD~~~~~~~~v~~yIPVpKs---PHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e  324 (459)
T d1fwxa2         248 YQELNGVKVVDGRKEASSLFTRYIPIANN---PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE  324 (459)
T ss_dssp             SEEETTEEEEECSGG--CSSEEEEEEESS---CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEEC
T ss_pred             cEEeCCceeecccccCCcceeEEEecCCC---CCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEee
Confidence                        110   11112222222   223456678889999999999999977653            111111


Q ss_pred             ecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCC----------cEEEEEecCCCcccEEEE------EeCCCCCEE
Q 014977          213 NAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDG----------TRLQEVRRGVDRAEIYSI------ALSPNVQWL  276 (415)
Q Consensus       213 ~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~----------~~~~~~~~~~~~~~v~~l------~~spdg~~l  276 (415)
                      ....-....-+|+..|....+---|.. |.-|++...          ..+..+..+..   +-.+      ...|||++|
T Consensus       325 ~elglgPLht~fd~~g~aytslfids~-v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~---~gh~~~~~g~t~~~dgk~l  400 (459)
T d1fwxa2         325 PELGLGPLHTAFDGRGNAYTSLFLDSQ-VVKWNIEDAIRAYAGEKVDPIKDKLDVHYQ---PGHLKTVMGETLDATNDWL  400 (459)
T ss_dssp             CBCCSCEEEEEECTTSEEEEEETTTTE-EEEEEHHHHHHHHHTCSCCCEEEEEECSSC---EEEEEETTTTSTTCCSSEE
T ss_pred             cccCcCccccccCCCceEEEEeeccce-EEEEecchhhhhhccccCCcceeccccccC---CCCCccCcCCcCCCCCCEE
Confidence            112223445678888865556667888 999998432          44556654221   2222      246899999


Q ss_pred             EEEe
Q 014977          277 AVAS  280 (415)
Q Consensus       277 ~s~s  280 (415)
                      ++..
T Consensus       401 ~~~n  404 (459)
T d1fwxa2         401 VCLS  404 (459)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            8875

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.76  E-value=0.0079  Score=50.25  Aligned_cols=222  Identities=16%  Similarity=0.187  Sum_probs=140.7

Q ss_pred             EEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeC-CeEEEEecCCCCCCCCCeEEEEECCC-CCE
Q 014977           49 SVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRC-NILALVGAGDNSQYPPTKVIIWDDHQ-SRC  126 (415)
Q Consensus        49 ~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~~~~~~i~vwd~~~-~~~  126 (415)
                      +.-.+|..+.||.-....+.|||+++.+++....+   ...+.-+.|-. +...+++.        ..|.-|+++. ..+
T Consensus        67 sAIMhP~~~IiALrag~~LQiFnletK~klks~~~---~e~VvfWkWis~~~L~lVT~--------taVYHW~~~g~s~P  135 (327)
T d1utca2          67 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM---TDDVTFWKWISLNTVALVTD--------NAVYHWSMEGESQP  135 (327)
T ss_dssp             EEEECSSSSEEEEEETTEEEEEETTTTEEEEEEEC---SSCCCEEEESSSSEEEEECS--------SEEEEEESSSSCCC
T ss_pred             hhhcCCCCcEEEEecCCeEEEEehhHhhhhceEEc---CCCcEEEEecCCCEEEEEcC--------CceEEEcccCCCCc
Confidence            45567888888887778899999999777666554   33456666655 55666663        7899999854 356


Q ss_pred             EEEEE-c----cCceeEEEEcCCeEEEE----------eCCeEEEEEcCCceeeeEEeccCCCcceEEEecC--CCc-eE
Q 014977          127 IGEFA-F----RSDVRSVKLSRDRIVVV----------LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHH--SST-SV  188 (415)
Q Consensus       127 ~~~~~-~----~~~i~~l~~~~~~~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~  188 (415)
                      .+.+. |    ...|-.-..+++.++++          -.|.+.+|..+. +..+.+++|..  ....+..+  ++. .+
T Consensus       136 ~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er-~~sQ~ieGhaa--~F~~~~~~g~~~~~~l  212 (327)
T d1utca2         136 VKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAA--SFAQFKMEGNAEESTL  212 (327)
T ss_dssp             EEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEE--EEEEECCTTCSSCEEE
T ss_pred             hhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc-CcCccccceee--eeEEEEcCCCCCCceE
Confidence            66665 3    35677778888888876          247888999764 44556666654  22222221  111 22


Q ss_pred             EEEe--CCccCeEEEEEcCCc----c---eEEEe------cCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEE
Q 014977          189 LACP--GLQRGQVRIEHFGLN----M---IKLIN------AHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQ  253 (415)
Q Consensus       189 l~~~--g~~dg~v~i~~~~~~----~---~~~~~------~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~  253 (415)
                      ++++  +...+.+.|-.....    .   .+...      ...+-..++..++.-.++..-+.-|. |++||+.++.++.
T Consensus       213 f~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~-i~lyDleTgt~i~  291 (327)
T d1utca2         213 FCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGY-IHLYDLETGTCIY  291 (327)
T ss_dssp             EEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSE-EEEEETTTCCEEE
T ss_pred             EEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcE-EEEEEcccccEEE
Confidence            2221  223356666333221    1   11111      12334557788887778888899999 9999999999997


Q ss_pred             EEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEE
Q 014977          254 EVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHI  287 (415)
Q Consensus       254 ~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~v  287 (415)
                      .-+-  ....|...+-+.+..=++....+|.|.-
T Consensus       292 ~nRI--s~~~iF~~a~~~~~~Gi~~VNr~GqVl~  323 (327)
T d1utca2         292 MNRI--SGETIFVTAPHEATAGIIGVNRKGQVLS  323 (327)
T ss_dssp             EEEC--CSSCEEEEEEETTTTEEEEEETTSEEEE
T ss_pred             Eeec--CCCceEEeccCCCCceEEEECCCCeEEE
Confidence            7665  4456665555555555666667886654

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.75  E-value=0.0082  Score=50.12  Aligned_cols=214  Identities=8%  Similarity=-0.078  Sum_probs=121.8

Q ss_pred             CCceEEEEEeCCCCEEEEEe--CCcEEEEEccCCceeEEEeccCCCeeEEEEeee--CCeEEEEecCCCCCCCCCeEEEE
Q 014977           44 EIELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFR--CNILALVGAGDNSQYPPTKVIIW  119 (415)
Q Consensus        44 ~~~V~~l~~sp~g~~la~g~--d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~s~~~d~~~~~~~i~vw  119 (415)
                      ...+.+++|.+..+.|.-..  .+.|+..+++.........  ..-.....++++  .+..+++-.. .     +.|.+.
T Consensus        35 ~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~--~~~~~p~~iAvD~~~~~lY~~d~~-~-----~~I~~~  106 (263)
T d1npea_          35 AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR--QDLGSPEGIALDHLGRTIFWTDSQ-L-----DRIEVA  106 (263)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC--TTCCCEEEEEEETTTTEEEEEETT-T-----TEEEEE
T ss_pred             CCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEE--eccccccEEEEeccCCeEEEeccC-C-----CEEEEE
Confidence            34577899998888777666  6778877877544332221  222344555554  4444444433 3     899999


Q ss_pred             ECCCCCEEEEEEc-cCceeEEEEcCCeEEEE-e-----CCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEe
Q 014977          120 DDHQSRCIGEFAF-RSDVRSVKLSRDRIVVV-L-----EHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP  192 (415)
Q Consensus       120 d~~~~~~~~~~~~-~~~i~~l~~~~~~~~~~-~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  192 (415)
                      ++........+.. ......++++|...++. .     ...|..-++...........  .-.....++.++.+..|..+
T Consensus       107 ~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~--~~~~P~glaiD~~~~~lYw~  184 (263)
T d1npea_         107 KMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQD--NLGLPNGLTFDAFSSQLCWV  184 (263)
T ss_dssp             ETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECT--TCSCEEEEEEETTTTEEEEE
T ss_pred             ecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeee--cccccceEEEeecCcEEEEE
Confidence            9876554333332 36788999988655554 2     12355555543332222221  11234566666555555555


Q ss_pred             CCccCeEEEEEcCCcceEEEecCccceEEEEeCCCCCEEEEEe-CCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCC
Q 014977          193 GLQRGQVRIEHFGLNMIKLINAHDSHIACFTLTLDGLLLATAS-TRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSP  271 (415)
Q Consensus       193 g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s-~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp  271 (415)
                      ....+.|..-+.++.....+.........|++.  +..|.... ..+. |...|..+++.+..+... ......+++..+
T Consensus       185 d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~--~~~lYwtd~~~~~-I~~~~~~~g~~~~~~~~~-~~~~~~gi~v~~  260 (263)
T d1npea_         185 DAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNS-VIAMDLAISKEMDTFHPH-KQTRLYGITIAL  260 (263)
T ss_dssp             ETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTE-EEEEETTTTEEEEEECCS-SCCCCCCEEEEC
T ss_pred             eCCCCEEEEEECCCCCeEEEECCCCCcEEEEEE--CCEEEEEECCCCE-EEEEECCCCccceEECCC-CCCCcceEEEeC
Confidence            556678887777765554443332334577775  34455444 5566 999999888887666432 223344555443

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.73  E-value=0.013  Score=54.92  Aligned_cols=53  Identities=8%  Similarity=-0.021  Sum_probs=37.9

Q ss_pred             EEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977          241 IRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       241 I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                      |.-||+.+|+.+...+...   +...=..+-.|.+|++++.||.++.||.++|+..
T Consensus       459 l~AiD~~tGk~~W~~~~~~---p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~L  511 (573)
T d1kb0a2         459 LLAWDPVAQKAAWSVEHVS---PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKL  511 (573)
T ss_dssp             EEEEETTTTEEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             EEEeCCCCCceEeeecCCC---CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEe
Confidence            7778888888887776421   1111112336778888999999999999999853

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.70  E-value=0.017  Score=53.95  Aligned_cols=235  Identities=11%  Similarity=0.024  Sum_probs=130.7

Q ss_pred             EEEEEe-CCcEEEEEccCCceeEEEeccCCCee--EEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEcc-
Q 014977           58 CFAAGT-SCGFRIYNCEPFKETFRRDLKSGGFR--IVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFR-  133 (415)
Q Consensus        58 ~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~-  133 (415)
                      .++.+. ++.+.-.|..+++.+...........  +...-.-.++.+++..........|.|.-+|.++|+.+.++... 
T Consensus       119 ~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~  198 (560)
T d1kv9a2         119 KVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVP  198 (560)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSC
T ss_pred             eEEEEeCCCEEEEEECCCCcEEeccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeeecc
Confidence            455555 77777777777666655443221111  00000011344444333221123478999999999999988621 


Q ss_pred             ------------------------------Cce-eEEEEcCCeEEEE----------------------eCCeEEEEEcC
Q 014977          134 ------------------------------SDV-RSVKLSRDRIVVV----------------------LEHKIYVYSFV  160 (415)
Q Consensus       134 ------------------------------~~i-~~l~~~~~~~~~~----------------------~d~~i~iwd~~  160 (415)
                                                    ..+ ..+.+.+...++.                      ....|.-.|++
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~  278 (560)
T d1kv9a2         199 GDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPD  278 (560)
T ss_dssp             CCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTT
T ss_pred             ccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCC
Confidence                                          011 1234444433332                      03467788889


Q ss_pred             CceeeeEEeccCCCc---------ceEEEecCCCceEEEEeCCccCeEEEEEcC-CcceEEEecCc--------------
Q 014977          161 DLKLLHQIETLANLR---------GLCCLSHHSSTSVLACPGLQRGQVRIEHFG-LNMIKLINAHD--------------  216 (415)
Q Consensus       161 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~g~~dg~v~i~~~~-~~~~~~~~~~~--------------  216 (415)
                      +++....++...+..         ....+..+.....++..+..+|.+.+.+.. ++.+.....-.              
T Consensus       279 tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~  358 (560)
T d1kv9a2         279 TGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRP  358 (560)
T ss_dssp             TCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCE
T ss_pred             ccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhhccc
Confidence            998887765543322         123344444444455557788988885544 33332221100              


Q ss_pred             ----------------------cceEEEEeCCCCCEEEEEeCC------------------------------------C
Q 014977          217 ----------------------SHIACFTLTLDGLLLATASTR------------------------------------G  238 (415)
Q Consensus       217 ----------------------~~i~~l~~sp~g~~l~s~s~d------------------------------------g  238 (415)
                                            ..-...+++|+..+++....+                                    |
T Consensus       359 ~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G  438 (560)
T d1kv9a2         359 VEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSG  438 (560)
T ss_dssp             EECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEE
T ss_pred             cccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCccccc
Confidence                                  001134566776666654322                                    4


Q ss_pred             cEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977          239 TLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       239 ~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                      . |.-||+.+|+.+.++....+   ..+-.+.-.+.+++.++.||.++-+|.++|+..
T Consensus       439 ~-l~A~D~~tGk~~W~~~~~~~---~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~L  492 (560)
T d1kv9a2         439 A-LLAWDPVKQKAAWKVPYPTH---WNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL  492 (560)
T ss_dssp             E-EEEEETTTTEEEEEEEESSS---CCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             c-eEEEeCCCCeEeeeccCCCC---CCCceeEECCCEEEEECCCCcEEEEECCCCcEe
Confidence            5 78899999998887764322   221122335677888999999999999999853

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.59  E-value=0.01  Score=52.33  Aligned_cols=187  Identities=11%  Similarity=0.076  Sum_probs=111.4

Q ss_pred             CeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE-cc---------------------------------------Cce-
Q 014977           98 NILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA-FR---------------------------------------SDV-  136 (415)
Q Consensus        98 ~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~-~~---------------------------------------~~i-  136 (415)
                      ....+.+++..     |.|+|+-+.+++.+..+. +.                                       +.. 
T Consensus        12 eyy~f~SgG~s-----G~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~H   86 (459)
T d1fwxa2          12 DYYGFWSSGQS-----GEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLH   86 (459)
T ss_dssp             SEEEEECCBTT-----CEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBC
T ss_pred             cEEEEeeCCcc-----ceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcC
Confidence            34567778877     999999998888887764 11                                       000 


Q ss_pred             -eEEEEcC---CeEEEE----eCCeEEEEEcCCceeeeEEeccC-CCcceEEEecCCCceEEEEeCCc------c-----
Q 014977          137 -RSVKLSR---DRIVVV----LEHKIYVYSFVDLKLLHQIETLA-NLRGLCCLSHHSSTSVLACPGLQ------R-----  196 (415)
Q Consensus       137 -~~l~~~~---~~~~~~----~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~g~~------d-----  196 (415)
                       ..+.+..   ||+++.    .+..|.+.|+.+.+..+.+.... .....+.....++..++++.+..      |     
T Consensus        87 HP~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~  166 (459)
T d1fwxa2          87 HVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNME  166 (459)
T ss_dssp             CEEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTT
T ss_pred             CCcccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCcccc
Confidence             1344433   788887    57899999999998877554421 22233445556666677653320      1     


Q ss_pred             ------CeEEEEEcC-CcceEEEecCccceEEEEeCCCCCEEEEEeCCCc--------------EEEEE-----------
Q 014977          197 ------GQVRIEHFG-LNMIKLINAHDSHIACFTLTLDGLLLATASTRGT--------------LIRIF-----------  244 (415)
Q Consensus       197 ------g~v~i~~~~-~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~--------------~I~vw-----------  244 (415)
                            +.+.+.+.. .+....+.. ......+.++++|+++++.+.+..              .+.++           
T Consensus       167 d~~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~  245 (459)
T d1fwxa2         167 DVANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA  245 (459)
T ss_dssp             CGG-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred             chhhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhc
Confidence                  122222222 233333332 335567899999999888764311              13333           


Q ss_pred             ------------ECCCC---cEEEEEecCCCcccEEEEEeCCCCCEEEEEe-CCCeEEEEEceec
Q 014977          245 ------------NTVDG---TRLQEVRRGVDRAEIYSIALSPNVQWLAVAS-DKGTVHIFSLRVR  293 (415)
Q Consensus       245 ------------d~~~~---~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s-~dg~i~vwd~~~~  293 (415)
                                  |.+..   ..++.+..   ......+.++|||+++++++ .+.++.|+|+++-
T Consensus       246 Gk~~eingV~VVD~~~~~~~~v~~yIPV---pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki  307 (459)
T d1fwxa2         246 GDYQELNGVKVVDGRKEASSLFTRYIPI---ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF  307 (459)
T ss_dssp             TCSEEETTEEEEECSGG--CSSEEEEEE---ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred             CCcEEeCCceeecccccCCcceeEEEec---CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhh
Confidence                        33221   12222322   12345789999999987655 5789999999754

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.48  E-value=0.014  Score=54.56  Aligned_cols=233  Identities=9%  Similarity=-0.058  Sum_probs=125.8

Q ss_pred             EEEEEe-CCcEEEEEccCCceeEEEeccCCC--eeEEE-EeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEcc
Q 014977           58 CFAAGT-SCGFRIYNCEPFKETFRRDLKSGG--FRIVE-MLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFR  133 (415)
Q Consensus        58 ~la~g~-d~~v~iw~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~  133 (415)
                      .++.++ ++.+.-.|.++++......+....  ..+.. .... ++.+++.......-..+.|.-+|+.+|+.+..+...
T Consensus       117 ~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~-~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~  195 (571)
T d2ad6a1         117 QIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFAT  195 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred             eEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEe-CCeEEEeeccccccccCcEEEEECCCCcEEEEEecc
Confidence            455555 787777788887766654431111  11110 1111 234444333211112389999999999999987621


Q ss_pred             C--------------------------------------ce-eEEEEcCCeEEEE---e----------------CCeEE
Q 014977          134 S--------------------------------------DV-RSVKLSRDRIVVV---L----------------EHKIY  155 (415)
Q Consensus       134 ~--------------------------------------~i-~~l~~~~~~~~~~---~----------------d~~i~  155 (415)
                      .                                      .+ ....+.+...++.   .                ...+.
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svv  275 (571)
T d2ad6a1         196 GSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIW  275 (571)
T ss_dssp             SCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEE
T ss_pred             CCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCcccccccccccccccee
Confidence            1                                      01 1234444433322   0                35688


Q ss_pred             EEEcCCceeeeEEeccCCCc---------ceEEEecCCCceEEEEeCCccCeEEEEEc-CCcceEEEecC----------
Q 014977          156 VYSFVDLKLLHQIETLANLR---------GLCCLSHHSSTSVLACPGLQRGQVRIEHF-GLNMIKLINAH----------  215 (415)
Q Consensus       156 iwd~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~g~~dg~v~i~~~-~~~~~~~~~~~----------  215 (415)
                      ..|.++++.+..++...+..         ....+..+.....++.....+|.+.+.+. +++.+...+..          
T Consensus       276 Ald~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~~~  355 (571)
T d2ad6a1         276 GRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVD  355 (571)
T ss_dssp             EEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEEC
T ss_pred             eeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCccccccccc
Confidence            88999999888776543322         22233333333333444567888877443 33333211100          


Q ss_pred             ---------------------------ccc--eEEEEeCCCCCEEEEEeCC-----------------------------
Q 014977          216 ---------------------------DSH--IACFTLTLDGLLLATASTR-----------------------------  237 (415)
Q Consensus       216 ---------------------------~~~--i~~l~~sp~g~~l~s~s~d-----------------------------  237 (415)
                                                 .+.  -...+++|+..+++....+                             
T Consensus       356 ~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (571)
T d2ad6a1         356 LKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGP  435 (571)
T ss_dssp             TTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECT
T ss_pred             ccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceeecccc
Confidence                                       000  0125667766666543322                             


Q ss_pred             --------CcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceeccc
Q 014977          238 --------GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVV  295 (415)
Q Consensus       238 --------g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~  295 (415)
                              |. |.-+|+.+|+.+.+.....   +..+=..+-.+.++++++.||.++-+|.++|+.
T Consensus       436 ~~~~~~~~G~-l~AiD~~TG~~~W~~~~~~---~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~  497 (571)
T d2ad6a1         436 NGPTKKEMGQ-IRAFDLTTGKAKWTKWEKF---AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKE  497 (571)
T ss_dssp             TSTTSCCCEE-EEEECTTTCCEEEEEEESS---CCCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             CCcccCCccc-EEEeccCCCceeeEcCCCC---CCCcceeEecCCEEEEECCCCeEEEEECCCCcE
Confidence                    34 7778888888887765321   111111122456778899999999999999985

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.33  E-value=0.063  Score=50.24  Aligned_cols=55  Identities=11%  Similarity=0.113  Sum_probs=38.1

Q ss_pred             CcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977          238 GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       238 g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                      |. |.-||+.+|+.+......   .++.+=.++-.|.+++.|+.||.++-+|.++|+..
T Consensus       453 G~-l~A~D~~TG~~~W~~~~~---~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~L  507 (596)
T d1w6sa_         453 GQ-IKAYNAITGDYKWEKMER---FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLL  507 (596)
T ss_dssp             EE-EEEECTTTCCEEEEEEES---SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             ce-EEEEeCCCCceecccCCC---CCCccceeEecCCEEEEECCCCeEEEEECCCCcEe
Confidence            45 778888888887665431   12222122335678888999999999999999853

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.24  E-value=0.054  Score=50.45  Aligned_cols=56  Identities=9%  Similarity=0.109  Sum_probs=37.8

Q ss_pred             CeEEEEECCCCCEEEEEEcc-----CceeEE-EEcCCeEEEE--------eCCeEEEEEcCCceeeeEEec
Q 014977          114 TKVIIWDDHQSRCIGEFAFR-----SDVRSV-KLSRDRIVVV--------LEHKIYVYSFVDLKLLHQIET  170 (415)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~~~-----~~i~~l-~~~~~~~~~~--------~d~~i~iwd~~~~~~~~~~~~  170 (415)
                      +.|.-.|.++|+.+......     ..++.- .+. ++.+++        ..+.|+-+|+.+|+.+..+..
T Consensus       125 g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~-~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t  194 (571)
T d2ad6a1         125 GHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA  194 (571)
T ss_dssp             SEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             CcEEeeehhhhhhhccccccccccccceeecCeEe-CCeEEEeeccccccccCcEEEEECCCCcEEEEEec
Confidence            89999999999998877521     122211 222 334444        267899999999999887653

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.21  E-value=0.042  Score=45.54  Aligned_cols=228  Identities=9%  Similarity=-0.054  Sum_probs=127.9

Q ss_pred             CCEEEEEeCCcEEEEEccCCcee---EEEeccCCCeeEEEEeeeCC-eEEEEecCCCCCCCCCeEEEEECCCCCEEEEEE
Q 014977           56 YGCFAAGTSCGFRIYNCEPFKET---FRRDLKSGGFRIVEMLFRCN-ILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFA  131 (415)
Q Consensus        56 g~~la~g~d~~v~iw~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~  131 (415)
                      |.+|+.+..+.|+-..++.....   ....+......+..+.|+.. ..++.+-...     +.|...++..+.....+.
T Consensus         1 ~~fLl~s~~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~-----~~I~~~~l~g~~~~~v~~   75 (263)
T d1npea_           1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISE-----PSIGRASLHGGEPTTIIR   75 (263)
T ss_dssp             CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTT-----TEEEEEESSSCCCEEEEC
T ss_pred             CCEEEEeCCCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCC-----CeEEEEEcccCCcEEEEE
Confidence            45666666667777776542211   01111123344666777753 3444443443     889888877655444443


Q ss_pred             -ccCceeEEEEcCC--eEEEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEeCCc--cCeEEEEEc
Q 014977          132 -FRSDVRSVKLSRD--RIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACPGLQ--RGQVRIEHF  204 (415)
Q Consensus       132 -~~~~i~~l~~~~~--~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~--dg~v~i~~~  204 (415)
                       ....+.++++..-  ..+++  ..+.|.+.++........+.....  ....++.+|...++..+-..  ...|.--..
T Consensus        76 ~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~--~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~  153 (263)
T d1npea_          76 QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLV--NPRGIVTDPVRGNLYWTDWNRDNPKIETSHM  153 (263)
T ss_dssp             TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS--SEEEEEEETTTTEEEEEECCSSSCEEEEEET
T ss_pred             eccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEeccccc--CCcEEEEecccCcEEEeecCCCCcEEEEecC
Confidence             2356788888743  33344  467899999865443322322222  34555555555555544222  223433445


Q ss_pred             CCcceEEEe-cCccceEEEEeCCCCCEEEEEe-CCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEE-EEeC
Q 014977          205 GLNMIKLIN-AHDSHIACFTLTLDGLLLATAS-TRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLA-VASD  281 (415)
Q Consensus       205 ~~~~~~~~~-~~~~~i~~l~~sp~g~~l~s~s-~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~-s~s~  281 (415)
                      ++.....+. ..-.....|++.+.++.|..+. ..+. |...|+........+.+.   ....+|++.  +.+|. +-..
T Consensus       154 dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~-I~~~~~~g~~~~~v~~~~---~~P~~lav~--~~~lYwtd~~  227 (263)
T d1npea_         154 DGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHR-AECLNPAQPGRRKVLEGL---QYPFAVTSY--GKNLYYTDWK  227 (263)
T ss_dssp             TSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTEEEEEEEEECC---CSEEEEEEE--TTEEEEEETT
T ss_pred             CCCCceeeeeecccccceEEEeecCcEEEEEeCCCCE-EEEEECCCCCeEEEECCC---CCcEEEEEE--CCEEEEEECC
Confidence            555444443 3335668999998887776664 4566 999998654443344432   234578775  34454 4446


Q ss_pred             CCeEEEEEceecccC
Q 014977          282 KGTVHIFSLRVRVVG  296 (415)
Q Consensus       282 dg~i~vwd~~~~~~~  296 (415)
                      .+.|...|..+++..
T Consensus       228 ~~~I~~~~~~~g~~~  242 (263)
T d1npea_         228 TNSVIAMDLAISKEM  242 (263)
T ss_dssp             TTEEEEEETTTTEEE
T ss_pred             CCEEEEEECCCCccc
Confidence            678888888777643

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.05  Score=45.16  Aligned_cols=227  Identities=7%  Similarity=-0.097  Sum_probs=126.1

Q ss_pred             EEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCC-eEEEEecCCCCCCCCCeEEEEECCCCCE---EEE-EE-
Q 014977           58 CFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCN-ILALVGAGDNSQYPPTKVIIWDDHQSRC---IGE-FA-  131 (415)
Q Consensus        58 ~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~~~~~~i~vwd~~~~~~---~~~-~~-  131 (415)
                      +|+.+....|+-.++++......  + .....+..+.|+.. ..++.+-...     +.|...++.....   ... +. 
T Consensus         3 fLl~s~~~~I~~~~l~~~~~~~~--~-~~~~~~~~id~d~~~~~lYw~D~~~-----~~I~~~~l~~~~~~~~~~~~~~~   74 (266)
T d1ijqa1           3 YLFFTNRHEVRKMTLDRSEYTSL--I-PNLRNVVALDTEVASNRIYWSDLSQ-----RMICSTQLDRAHGVSSYDTVISR   74 (266)
T ss_dssp             EEEEECBSSEEEEETTSCCCEEE--E-CSCSSEEEEEEETTTTEEEEEETTT-----TEEEEEEC--------CEEEECS
T ss_pred             EEEEECCCeEEEEECCCCcceee--e-CCCCceEEEEEEeCCCEEEEEECCC-----CEEEEEEecCCCCCcceEEEEeC
Confidence            45666655688888876443222  2 33445667778763 3334443333     6777666543221   111 22 


Q ss_pred             ccCceeEEEEcC--CeEEEE--eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEEEe-CCccCeEEEEEcCC
Q 014977          132 FRSDVRSVKLSR--DRIVVV--LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLACP-GLQRGQVRIEHFGL  206 (415)
Q Consensus       132 ~~~~i~~l~~~~--~~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~dg~v~i~~~~~  206 (415)
                      ....+.+|++.+  ...+++  ..+.|.+.++........+.....  ....+..++...+|..+ .+..+.|.-...++
T Consensus        75 ~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~--~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dG  152 (266)
T d1ijqa1          75 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGS--KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG  152 (266)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTC--CEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             CCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCC--CcceEEEEcccCeEEEeccCCCcceeEeccCC
Confidence            234566777764  444444  467899999876554444443333  34445555433344433 23344565566676


Q ss_pred             cceEEEec-CccceEEEEeCCCCCEEEEEe-CCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCe
Q 014977          207 NMIKLINA-HDSHIACFTLTLDGLLLATAS-TRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGT  284 (415)
Q Consensus       207 ~~~~~~~~-~~~~i~~l~~sp~g~~l~s~s-~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~  284 (415)
                      .....+.. .-.....+++.+.++.|..+. ..+. |...|+........+..........+|++. ++.+..+-..++.
T Consensus       153 s~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~-I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~  230 (266)
T d1ijqa1         153 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS-ISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEA  230 (266)
T ss_dssp             CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTE
T ss_pred             CceecccccccceeeEEEeeccccEEEEecCCcCE-EEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCe
Confidence            66655543 345678999999887776664 4566 999998654443333332222346678776 3344444456777


Q ss_pred             EEEEEceecccC
Q 014977          285 VHIFSLRVRVVG  296 (415)
Q Consensus       285 i~vwd~~~~~~~  296 (415)
                      |+..+..+++..
T Consensus       231 I~~~~~~~g~~~  242 (266)
T d1ijqa1         231 IFSANRLTGSDV  242 (266)
T ss_dssp             EEEEETTTCCCC
T ss_pred             EEEEECCCCcce
Confidence            877776666543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.13  E-value=0.059  Score=47.08  Aligned_cols=83  Identities=6%  Similarity=-0.041  Sum_probs=50.0

Q ss_pred             CCCceEEEEEeCCCCEEEEEe--CCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCC-CCCCCCeEEEE
Q 014977           43 DEIELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDN-SQYPPTKVIIW  119 (415)
Q Consensus        43 h~~~V~~l~~sp~g~~la~g~--d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-~~~~~~~i~vw  119 (415)
                      |.......++.++|++++.|.  ...+.+||..+..-.....+.... .........++.+++.++.. .......+.+|
T Consensus        74 ~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r-~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~y  152 (387)
T d1k3ia3          74 HDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVAR-GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVY  152 (387)
T ss_dssp             CCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCC-SSCEEEECTTSCEEEECCCCCSSSCCCCEEEE
T ss_pred             cccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccc-cccceeeecCCceeeeccccccccccceeeee
Confidence            333345667889999999987  568999998865433222221111 12234455666666666543 11223578999


Q ss_pred             ECCCCCE
Q 014977          120 DDHQSRC  126 (415)
Q Consensus       120 d~~~~~~  126 (415)
                      |..+.+.
T Consensus       153 d~~~~~W  159 (387)
T d1k3ia3         153 SPSSKTW  159 (387)
T ss_dssp             ETTTTEE
T ss_pred             cCCCCce
Confidence            9887754

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.95  E-value=0.15  Score=47.21  Aligned_cols=105  Identities=14%  Similarity=0.076  Sum_probs=59.1

Q ss_pred             EEEEe-CCcEEEEEccCCceeEEEeccCCC---------eeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEE
Q 014977           59 FAAGT-SCGFRIYNCEPFKETFRRDLKSGG---------FRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIG  128 (415)
Q Consensus        59 la~g~-d~~v~iw~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~  128 (415)
                      |.+++ ++.|.-.|.++++.+.+.......         .....+....+. +++. ..+     +.|.-.|..+|+.+.
T Consensus        69 vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~-~~~-----g~l~Alda~tG~~~w  141 (560)
T d1kv9a2          69 IYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDK-VYVG-TLD-----GRLIALDAKTGKAIW  141 (560)
T ss_dssp             EEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTE-EEEE-CTT-----SEEEEEETTTCCEEE
T ss_pred             EEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCe-EEEE-eCC-----CEEEEEECCCCcEEe
Confidence            33444 777777788887777664321000         000011122233 3333 333     899999999999998


Q ss_pred             EEEccCcee--EEEEc---CCeEEEE--------eCCeEEEEEcCCceeeeEEec
Q 014977          129 EFAFRSDVR--SVKLS---RDRIVVV--------LEHKIYVYSFVDLKLLHQIET  170 (415)
Q Consensus       129 ~~~~~~~i~--~l~~~---~~~~~~~--------~d~~i~iwd~~~~~~~~~~~~  170 (415)
                      .........  .+.-.   -++.+++        ..|.|.-+|.++|+.+..+..
T Consensus       142 ~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t  196 (560)
T d1kv9a2         142 SQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT  196 (560)
T ss_dssp             EEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             ccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeee
Confidence            887322111  11111   2344444        247899999999999988753

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.73  E-value=0.21  Score=46.27  Aligned_cols=106  Identities=6%  Similarity=-0.061  Sum_probs=60.2

Q ss_pred             EEEEEe-CCcEEEEEccCCceeEEEeccCC---------CeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEE
Q 014977           58 CFAAGT-SCGFRIYNCEPFKETFRRDLKSG---------GFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCI  127 (415)
Q Consensus        58 ~la~g~-d~~v~iw~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~  127 (415)
                      .|.+++ ++.|.-+|.++++.+.+......         ......+....+..++.+  .+     +.+.-.|..+|+.+
T Consensus        79 ~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t--~~-----g~l~alda~tG~~~  151 (573)
T d1kb0a2          79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGA--WD-----GRLIALDAATGKEV  151 (573)
T ss_dssp             EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEEC--TT-----SEEEEEETTTCCEE
T ss_pred             EEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCcEEEEe--cc-----cceeeeccccccce
Confidence            344445 78888888888777766432110         000011222333333333  22     88888999999998


Q ss_pred             EEEEc-cCc---e--eEEEEcCCeEEEE--------eCCeEEEEEcCCceeeeEEec
Q 014977          128 GEFAF-RSD---V--RSVKLSRDRIVVV--------LEHKIYVYSFVDLKLLHQIET  170 (415)
Q Consensus       128 ~~~~~-~~~---i--~~l~~~~~~~~~~--------~d~~i~iwd~~~~~~~~~~~~  170 (415)
                      ..... ...   +  ...-.-.++.+++        ..+.|+.+|..+|+.+..+..
T Consensus       152 W~~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t  208 (573)
T d1kb0a2         152 WHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFS  208 (573)
T ss_dssp             EEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             ecccCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccceeeeee
Confidence            87762 111   1  1111112444444        257899999999999887743

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.13  Score=42.41  Aligned_cols=205  Identities=7%  Similarity=-0.051  Sum_probs=112.3

Q ss_pred             CCCceEEEEEeCCCCEEEEEe--CCcEEEEEccCCce--eEEEeccCC--CeeEEEEeeeCCeEEEEecCCCCCCCCCeE
Q 014977           43 DEIELISVSWNQDYGCFAAGT--SCGFRIYNCEPFKE--TFRRDLKSG--GFRIVEMLFRCNILALVGAGDNSQYPPTKV  116 (415)
Q Consensus        43 h~~~V~~l~~sp~g~~la~g~--d~~v~iw~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i  116 (415)
                      ....+.+++|.+..+.|.-..  .+.|.-.+++....  .....+...  ...-.++.|.....+++-...      +.|
T Consensus        28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~------~~I  101 (266)
T d1ijqa1          28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVL------GTV  101 (266)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTT------TEE
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCC------CEE
Confidence            344578999999888777665  55566555543111  111111122  222234444455555554433      899


Q ss_pred             EEEECCCCCEEEEEE-ccCceeEEEEcCCe-EEEE----eCCeEEEEEcCCceeeeEEeccCCCcceEEEecCCCceEEE
Q 014977          117 IIWDDHQSRCIGEFA-FRSDVRSVKLSRDR-IVVV----LEHKIYVYSFVDLKLLHQIETLANLRGLCCLSHHSSTSVLA  190 (415)
Q Consensus       117 ~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~-~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  190 (415)
                      .+.++........+. ......+++++|.. .+..    ..+.|...++..............  ....++.++.+..|.
T Consensus       102 ~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~--~p~gl~iD~~~~~lY  179 (266)
T d1ijqa1         102 SVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ--WPNGITLDLLSGRLY  179 (266)
T ss_dssp             EEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCS--CEEEEEEETTTTEEE
T ss_pred             EeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccc--eeeEEEeeccccEEE
Confidence            999987666554444 45678899998854 4433    235677777654333322222222  345555555555555


Q ss_pred             EeCCccCeEEEEEcCCcceEEEe-cC--ccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEec
Q 014977          191 CPGLQRGQVRIEHFGLNMIKLIN-AH--DSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRR  257 (415)
Q Consensus       191 ~~g~~dg~v~i~~~~~~~~~~~~-~~--~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~  257 (415)
                      .+....+.|...+.++.....+. ..  ......|++. ++.+..+-..++. |...+..+++....+..
T Consensus       180 w~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~-I~~~~~~~g~~~~~~~~  247 (266)
T d1ijqa1         180 WVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEA-IFSANRLTGSDVNLLAE  247 (266)
T ss_dssp             EEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTE-EEEEETTTCCCCEEEEC
T ss_pred             EecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCe-EEEEECCCCcceEEEEc
Confidence            55556778887677665444332 22  2234567665 2333344345566 88888777776655554

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.65  E-value=0.08  Score=46.16  Aligned_cols=113  Identities=12%  Similarity=-0.013  Sum_probs=69.0

Q ss_pred             eEEEEEeCCCCEEEEEe-C-----C------cEEEEEccCCceeEEEec-cCCCeeEEEEeeeCCeEEEEecCCCCCCCC
Q 014977           47 LISVSWNQDYGCFAAGT-S-----C------GFRIYNCEPFKETFRRDL-KSGGFRIVEMLFRCNILALVGAGDNSQYPP  113 (415)
Q Consensus        47 V~~l~~sp~g~~la~g~-d-----~------~v~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~  113 (415)
                      +.......+|+.++.|+ +     +      .+.+||..+......... ..+...+....+.+++.+++.++.+    .
T Consensus        22 ~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~----~   97 (387)
T d1k3ia3          22 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGND----A   97 (387)
T ss_dssp             SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSS----T
T ss_pred             cEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCC----C
Confidence            34455567889888877 2     1      267899987543221111 1222223345677888888887654    2


Q ss_pred             CeEEEEECCCCCEEEEEE--ccCceeEEEEcCCeEEEEe---------CCeEEEEEcCCce
Q 014977          114 TKVIIWDDHQSRCIGEFA--FRSDVRSVKLSRDRIVVVL---------EHKIYVYSFVDLK  163 (415)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~--~~~~i~~l~~~~~~~~~~~---------d~~i~iwd~~~~~  163 (415)
                      ..+.+||..+.+....-.  ....-...+..+|+++++.         -..+.+||..+.+
T Consensus        98 ~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3          98 KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             cceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence            689999988776543222  2233456777788877771         2468999987764

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.58  E-value=0.14  Score=44.01  Aligned_cols=189  Identities=14%  Similarity=0.150  Sum_probs=95.0

Q ss_pred             EEeeeCCeEEEEecCCC-CC------CCCCeEEEEECCCCCE-EEEEE-cc-------CceeEEEE--cCCeEE--EE--
Q 014977           92 EMLFRCNILALVGAGDN-SQ------YPPTKVIIWDDHQSRC-IGEFA-FR-------SDVRSVKL--SRDRIV--VV--  149 (415)
Q Consensus        92 ~~~~~~~~~~l~s~~~d-~~------~~~~~i~vwd~~~~~~-~~~~~-~~-------~~i~~l~~--~~~~~~--~~--  149 (415)
                      ++...+++.++++++.. +.      ...|.|.++|+.+.+. ...+. ..       -....+.+  .+++..  .+  
T Consensus        39 Di~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvn  118 (340)
T d1v04a_          39 DLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVN  118 (340)
T ss_dssp             EEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEE
T ss_pred             eEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEe
Confidence            44556777776665431 00      1238999999876532 22332 11       12344443  334432  22  


Q ss_pred             ---eCCeEEEEEcCCce-ee---eEEeccCCCcceEEEecCCCceEEEEeC--Cc------------cCeEEEEEcCCcc
Q 014977          150 ---LEHKIYVYSFVDLK-LL---HQIETLANLRGLCCLSHHSSTSVLACPG--LQ------------RGQVRIEHFGLNM  208 (415)
Q Consensus       150 ---~d~~i~iwd~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~g--~~------------dg~v~i~~~~~~~  208 (415)
                         ...+|.+|++.... .+   ..+. +........+...+++.++++--  ..            -+...++..+.+.
T Consensus       119 H~~~~~~ieif~~~~~~~~l~~~~~v~-~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~  197 (340)
T d1v04a_         119 HPGSSSTVEVFKFQEEEKSLLHLKTIR-HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND  197 (340)
T ss_dssp             CSTTCCEEEEEEEETTTTEEEEEEEEC-CTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSC
T ss_pred             ccCCCceeEEEEEeCCCCeEEEEeecC-CccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCc
Confidence               24567777774322 11   1121 12222344555555566655411  10            1233443344444


Q ss_pred             eEEEecCccceEEEEeCCCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeC
Q 014977          209 IKLINAHDSHIACFTLTLDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASD  281 (415)
Q Consensus       209 ~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~  281 (415)
                      .......-...+.|+++||+++|+.+...+..|++|++.....+.......-....-.+.+.+++..+.+++.
T Consensus       198 ~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~~  270 (340)
T d1v04a_         198 VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCH  270 (340)
T ss_dssp             EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEE
T ss_pred             eEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEEC
Confidence            4444444566789999999998776655443399999875433222211113345677888764433444443

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.35  E-value=0.4  Score=44.43  Aligned_cols=55  Identities=15%  Similarity=0.238  Sum_probs=40.3

Q ss_pred             CcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeCCCeEEEEEceecccC
Q 014977          238 GTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASDKGTVHIFSLRVRVVG  296 (415)
Q Consensus       238 g~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~dg~i~vwd~~~~~~~  296 (415)
                      |. |.-+|+.+|+.+.+...+   .++..-..+..|.++++++.||.++-+|.++|+..
T Consensus       466 G~-l~AiD~~TG~i~W~~~~~---~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~L  520 (582)
T d1flga_         466 GS-LRAMDPVSGKVVWEHKEH---LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKEL  520 (582)
T ss_dssp             EE-EEEECTTTCCEEEEEEES---SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             Ce-EEEEcCCCCcEEeecCCC---CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEe
Confidence            45 788899999988877642   22222123346778888999999999999999853

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.22  E-value=0.78  Score=39.17  Aligned_cols=187  Identities=11%  Similarity=0.129  Sum_probs=106.3

Q ss_pred             CeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEc------CCeEEEE--e-----CCeEEEEEcC-Cce
Q 014977           98 NILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLS------RDRIVVV--L-----EHKIYVYSFV-DLK  163 (415)
Q Consensus        98 ~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~------~~~~~~~--~-----d~~i~iwd~~-~~~  163 (415)
                      +..++++....     +-|.+||+ .|+.++.+. .+.++.+..-      .....++  .     ...|.+|.+. ...
T Consensus        39 ~~SlI~gTdK~-----~Gl~vYdL-~G~~l~~~~-~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~  111 (353)
T d1h6la_          39 QNSKLITTNKK-----SGLAVYSL-EGKMLHSYH-TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG  111 (353)
T ss_dssp             GGCEEEEEETT-----SCCEEEET-TCCEEEECC-SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTT
T ss_pred             CccEEEEEcCc-----CCEEEEcC-CCcEEEecc-cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccc
Confidence            34444454444     67999997 588777654 3455555543      2222222  2     1367788774 222


Q ss_pred             eeeEEecc-------CCCcceEEEecCC-CceEEEEeCCccCeEEEEEcC----C----cceEEEecCccceEEEEeCCC
Q 014977          164 LLHQIETL-------ANLRGLCCLSHHS-STSVLACPGLQRGQVRIEHFG----L----NMIKLINAHDSHIACFTLTLD  227 (415)
Q Consensus       164 ~~~~~~~~-------~~~~~~~~~~~~~-~~~~l~~~g~~dg~v~i~~~~----~----~~~~~~~~~~~~i~~l~~sp~  227 (415)
                      .+..+...       ...+..+|+..++ .+.+.++....+|.+..|...    +    ..++.+. -...+..|.+.+.
T Consensus       112 ~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde  190 (353)
T d1h6la_         112 TLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDE  190 (353)
T ss_dssp             EEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETT
T ss_pred             ccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCC
Confidence            33333211       1123456664443 344445556688888775432    1    2233333 3457888999999


Q ss_pred             CCEEEEEeCCCcEEEEEECCC-----CcEEEEEecCCCcccEEEEEeC--CC--CCEEEEEeCCCeEEEEEceec
Q 014977          228 GLLLATASTRGTLIRIFNTVD-----GTRLQEVRRGVDRAEIYSIALS--PN--VQWLAVASDKGTVHIFSLRVR  293 (415)
Q Consensus       228 g~~l~s~s~dg~~I~vwd~~~-----~~~~~~~~~~~~~~~v~~l~~s--pd--g~~l~s~s~dg~i~vwd~~~~  293 (415)
                      ...|..+-++.. |+.++...     +..+....+....+.+-.|+.-  .+  |-+|++.-.+++..|||.+..
T Consensus       191 ~~~LyisEE~~G-iw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~  264 (353)
T d1h6la_         191 YGSLYIAEEDEA-IWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ  264 (353)
T ss_dssp             TTEEEEEETTTE-EEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred             CCcEEEecCccc-eEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            889999998877 77776542     2223222232245567777653  23  334555556789999998764

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.59  E-value=1.2  Score=38.34  Aligned_cols=176  Identities=8%  Similarity=0.047  Sum_probs=99.6

Q ss_pred             CceEEEEEeCCCCEEEEEeCCcEEEEEccC-----------CceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCC
Q 014977           45 IELISVSWNQDYGCFAAGTSCGFRIYNCEP-----------FKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPP  113 (415)
Q Consensus        45 ~~V~~l~~sp~g~~la~g~d~~v~iw~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~  113 (415)
                      ....-+++++...+|++|+...+.|..++.           .....+..+    ..+..++|+.+...+..+        
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~~~~i----p~v~~vafs~d~l~v~~~--------  104 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEI----PDVIFVCFHGDQVLVSTR--------  104 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEEC----TTEEEEEEETTEEEEEES--------
T ss_pred             cccceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcceeccCC----CCeEEEEeeCCEEEEEeC--------
Confidence            346678899988899988855778877531           111122222    246778888886554432        


Q ss_pred             CeEEEEECCCCCEEEEEE-ccCceeEEEEcCCeEEEE-eCCeEEEEEcCCceeeeEEecc---CCCcceEEEecCCCceE
Q 014977          114 TKVIIWDDHQSRCIGEFA-FRSDVRSVKLSRDRIVVV-LEHKIYVYSFVDLKLLHQIETL---ANLRGLCCLSHHSSTSV  188 (415)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  188 (415)
                      +.+..++...-....... ....+..+.++|....++ .++.+.++++.+++......+.   .-.....++.+.+.+..
T Consensus       105 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq  184 (381)
T d1xipa_         105 NALYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQ  184 (381)
T ss_dssp             SEEEEEESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEE
T ss_pred             CCEEEEEeeccccccccccccccccceecCCceeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEE
Confidence            678888866644443333 567889999999887777 7899999999887543222110   00012344445555555


Q ss_pred             EEEeCCccCeEEE--EEcCCcceEEEecCccceEEEEeCCCCCEEEEE
Q 014977          189 LACPGLQRGQVRI--EHFGLNMIKLINAHDSHIACFTLTLDGLLLATA  234 (415)
Q Consensus       189 l~~~g~~dg~v~i--~~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~  234 (415)
                      +++ + ..+...+  .......+.........+.+|.|-.+..++++-
T Consensus       185 ~v~-~-~g~~~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         185 SFA-W-RNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             EEE-E-ETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             EEE-e-CCCceeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence            443 2 1111221  111111110001123467788888777766654

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.55  E-value=0.85  Score=42.08  Aligned_cols=52  Identities=21%  Similarity=0.331  Sum_probs=36.5

Q ss_pred             CCCCEEEEEeCCCcEEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCC-EEEEE
Q 014977          226 LDGLLLATASTRGTLIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQ-WLAVA  279 (415)
Q Consensus       226 p~g~~l~s~s~dg~~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~-~l~s~  279 (415)
                      ..|.++++|+.||. ++.+|.++|+.+.+++...- ..-.-+.|..+|+ ||+..
T Consensus       495 tagglVF~Gt~dg~-l~A~Da~TGe~LW~~~~~~~-~~~~P~ty~~~G~qYv~i~  547 (582)
T d1flga_         495 TAGNLVFTGTGDGY-FKAFDAKSGKELWKFQTGSG-IVSPPITWEQDGEQYLGVT  547 (582)
T ss_dssp             ETTTEEEEECTTSE-EEEEETTTCCEEEEEECSSC-CCSCCEEEEETTEEEEEEE
T ss_pred             EcCCeEEEeCCCCe-EEEEECCCCcEeEEEECCCC-ccccCEEEEECCEEEEEEE
Confidence            45668888999999 99999999999988875311 1111255667885 55543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.35  E-value=1.5  Score=38.45  Aligned_cols=247  Identities=11%  Similarity=0.060  Sum_probs=124.0

Q ss_pred             CCCCCceEEEEEeCCCCEEEEEe--CC----cEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCC------
Q 014977           41 DVDEIELISVSWNQDYGCFAAGT--SC----GFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDN------  108 (415)
Q Consensus        41 ~~h~~~V~~l~~sp~g~~la~g~--d~----~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d------  108 (415)
                      .++.-.+...+++||++++|.+-  +|    .++++|+++++.+- ..+..  .....+.|.+++..+.-...+      
T Consensus       121 ~~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~-~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~  197 (430)
T d1qfma1         121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELP-DVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKS  197 (430)
T ss_dssp             SSSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEE-EEEEE--ECSCCEEECTTSSEEEEEECCCCSSCC
T ss_pred             ccccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecc-ccccc--ccccceEEcCCCCEEEEEEeccccCcc
Confidence            34455566788999999999765  33    48899999866432 22211  111345677765443322111      


Q ss_pred             -----CCCCCCeEEEEECCCCCE--EEEEE---ccCceeEEEEcCCeEEEE------eCC--eEEEEEcCCcee------
Q 014977          109 -----SQYPPTKVIIWDDHQSRC--IGEFA---FRSDVRSVKLSRDRIVVV------LEH--KIYVYSFVDLKL------  164 (415)
Q Consensus       109 -----~~~~~~~i~vwd~~~~~~--~~~~~---~~~~i~~l~~~~~~~~~~------~d~--~i~iwd~~~~~~------  164 (415)
                           .......|..+.+.+...  +..+.   ....+..+..++++++++      .+.  .+.+.|+.....      
T Consensus       198 ~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~  277 (430)
T d1qfma1         198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL  277 (430)
T ss_dssp             SSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC
T ss_pred             cccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCccccccccc
Confidence                 011235788888776532  23333   123466778889988776      123  355555532211      


Q ss_pred             --eeEEeccCCCcceEEEecCCCceEEEEeCC--ccCeEEEEEcCC---cceEEE-ecCccceEEEEeCCCCCEEEEE-e
Q 014977          165 --LHQIETLANLRGLCCLSHHSSTSVLACPGL--QRGQVRIEHFGL---NMIKLI-NAHDSHIACFTLTLDGLLLATA-S  235 (415)
Q Consensus       165 --~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~--~dg~v~i~~~~~---~~~~~~-~~~~~~i~~l~~sp~g~~l~s~-s  235 (415)
                        ...+.....  ...-+...+ +.+++.+..  .++.|..-+...   .....+ ..+...+..-.+...+.+|+.. .
T Consensus       278 ~~~~~~~~~~~--~~~~~~~~~-~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~  354 (430)
T d1qfma1         278 KWVKLIDNFEG--EYDYVTNEG-TVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYL  354 (430)
T ss_dssp             CCEEEECSSSS--CEEEEEEET-TEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEE
T ss_pred             ceeEeeccccc--ceEEEecCC-ceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEE
Confidence              111111111  111122222 233333221  123333322221   112333 3344444433344344455544 3


Q ss_pred             CCCc-EEEEEECCCCcEEEEEecCCCcccEEEEEeCCCCCEEEEEeC----CCeEEEEEceeccc
Q 014977          236 TRGT-LIRIFNTVDGTRLQEVRRGVDRAEIYSIALSPNVQWLAVASD----KGTVHIFSLRVRVV  295 (415)
Q Consensus       236 ~dg~-~I~vwd~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~----dg~i~vwd~~~~~~  295 (415)
                      .++. .|+++++.+++....+..  ..+.+..+...++...+...-.    -.+++-+|+.+++.
T Consensus       355 ~~~~~~l~v~~~~~~~~~~~~~~--~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~  417 (430)
T d1qfma1         355 HDVKNTLQLHDLATGALLKIFPL--EVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL  417 (430)
T ss_dssp             ETTEEEEEEEETTTCCEEEEECC--CSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred             cCCEeEEEEEECCCCcEEEecCC--CCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence            4432 388999988876554443  3456766766666654443322    26899999988863

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.23  E-value=3.3  Score=36.11  Aligned_cols=207  Identities=8%  Similarity=0.008  Sum_probs=100.3

Q ss_pred             CCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCCEEEEEEccCceeEEEEcCCeEEEE---eC----------
Q 014977           85 SGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVV---LE----------  151 (415)
Q Consensus        85 ~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~~---~d----------  151 (415)
                      ++...+..+..+|++..++-+-+...-....|++.|+.+++.+...-.......+.|.+|+..+.   .+          
T Consensus       122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~  201 (430)
T d1qfma1         122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE  201 (430)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred             cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccc
Confidence            34444556778888866552211100012689999999998765332222335688999987765   11          


Q ss_pred             ------CeEEEEEcCCcee--eeEEeccCCCcceEEEecCCCceEEEEe--CCccCeEEEEEcC--Cc---------ceE
Q 014977          152 ------HKIYVYSFVDLKL--LHQIETLANLRGLCCLSHHSSTSVLACP--GLQRGQVRIEHFG--LN---------MIK  210 (415)
Q Consensus       152 ------~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~--g~~dg~v~i~~~~--~~---------~~~  210 (415)
                            ..|+.+.+.+...  ...+.....+.....+..+.++.+++..  ...+....+|...  ..         ...
T Consensus       202 ~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  281 (430)
T d1qfma1         202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK  281 (430)
T ss_dssp             CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred             cccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeE
Confidence                  2588888866533  2333433343445555555566665432  2233333343221  10         111


Q ss_pred             EEecCccceEEEEeCCCCCEEEEEeC---CCcEEEEEECCCCcE--EEEEecCCCcccEEEEEeCCCCCEEEEE-eCCC-
Q 014977          211 LINAHDSHIACFTLTLDGLLLATAST---RGTLIRIFNTVDGTR--LQEVRRGVDRAEIYSIALSPNVQWLAVA-SDKG-  283 (415)
Q Consensus       211 ~~~~~~~~i~~l~~sp~g~~l~s~s~---dg~~I~vwd~~~~~~--~~~~~~~~~~~~v~~l~~spdg~~l~s~-s~dg-  283 (415)
                      .+........-+. +.++.+++....   ++. |...++.....  ...+-.. +...+..-.+...+.+|+.. -.++ 
T Consensus       282 ~~~~~~~~~~~~~-~~~~~~~~~Tn~~a~~~~-L~~~~~~~~~~~~w~~vi~~-~~~~~~~~~~~~~~~~lvl~~~~~~~  358 (430)
T d1qfma1         282 LIDNFEGEYDYVT-NEGTVFTFKTNRHSPNYR-LINIDFTDPEESKWKVLVPE-HEKDVLEWVACVRSNFLVLCYLHDVK  358 (430)
T ss_dssp             EECSSSSCEEEEE-EETTEEEEEECTTCTTCE-EEEEETTBCCGGGCEEEECC-CSSCEEEEEEEETTTEEEEEEEETTE
T ss_pred             eecccccceEEEe-cCCceeecccCcccccce-eEEecCCCCccccceEEecc-cCcceeeeEEEEECCEEEEEEEcCCE
Confidence            2222222222222 223333333332   345 66666654321  1223221 33334333333344455544 4554 


Q ss_pred             -eEEEEEceecc
Q 014977          284 -TVHIFSLRVRV  294 (415)
Q Consensus       284 -~i~vwd~~~~~  294 (415)
                       .|+++++..++
T Consensus       359 ~~l~v~~~~~~~  370 (430)
T d1qfma1         359 NTLQLHDLATGA  370 (430)
T ss_dssp             EEEEEEETTTCC
T ss_pred             eEEEEEECCCCc
Confidence             57888877654

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=90.30  E-value=6.6  Score=35.91  Aligned_cols=56  Identities=7%  Similarity=0.052  Sum_probs=38.6

Q ss_pred             CeEEEEECCCCCEEEEEEcc-----CceeE-EEEcCCeEEEE--------eCCeEEEEEcCCceeeeEEec
Q 014977          114 TKVIIWDDHQSRCIGEFAFR-----SDVRS-VKLSRDRIVVV--------LEHKIYVYSFVDLKLLHQIET  170 (415)
Q Consensus       114 ~~i~vwd~~~~~~~~~~~~~-----~~i~~-l~~~~~~~~~~--------~d~~i~iwd~~~~~~~~~~~~  170 (415)
                      +.|.-.|.++|+.+..+...     ..++. -.+. ++.+++        ..|.|+-+|+.+|+.+.++..
T Consensus       131 g~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~-~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t  200 (596)
T d1w6sa_         131 GNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA  200 (596)
T ss_dssp             SEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             CCeEeeccccCceeccccccccccccccccCCcEE-CCeEEEeeccccccccCceEEEECCCCcEEEEeec
Confidence            89999999999999988621     11211 1122 344444        248999999999999987653

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=89.43  E-value=5.4  Score=33.68  Aligned_cols=108  Identities=18%  Similarity=0.266  Sum_probs=62.4

Q ss_pred             CCCceEEEEeCCccCeEEEEEcCCcceEEEecCccceEEEEeC------CCCCEEEEEeCC----CcEEEEEECC-CCcE
Q 014977          183 HSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFTLT------LDGLLLATASTR----GTLIRIFNTV-DGTR  251 (415)
Q Consensus       183 ~~~~~~l~~~g~~dg~v~i~~~~~~~~~~~~~~~~~i~~l~~s------p~g~~l~s~s~d----g~~I~vwd~~-~~~~  251 (415)
                      +|...+++.+. .++-+++++++++.+..+.  .+.++.|..-      ....-|+.++..    .. |.+|.+. ....
T Consensus        37 ~p~~SlI~gTd-K~~Gl~vYdL~G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~-l~~~~id~~~~~  112 (353)
T d1h6la_          37 NPQNSKLITTN-KKSGLAVYSLEGKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNT-IEIYAIDGKNGT  112 (353)
T ss_dssp             CGGGCEEEEEE-TTSCCEEEETTCCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCE-EEEEEEETTTTE
T ss_pred             CcCccEEEEEc-CcCCEEEEcCCCcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCccee-EEEEEecCcccc
Confidence            34555665543 4555999999998887764  3455544432      223335555532    25 7788774 3334


Q ss_pred             EEEEecCCC-----cccEEEEEe--CCC-CC-EEEEEeCCCeEEEEEceecc
Q 014977          252 LQEVRRGVD-----RAEIYSIAL--SPN-VQ-WLAVASDKGTVHIFSLRVRV  294 (415)
Q Consensus       252 ~~~~~~~~~-----~~~v~~l~~--spd-g~-~l~s~s~dg~i~vwd~~~~~  294 (415)
                      +..+.....     ...+..+++  ++. |. ++++...+|.+..|.+...+
T Consensus       113 l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~  164 (353)
T d1h6la_         113 LQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADK  164 (353)
T ss_dssp             EEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECT
T ss_pred             cccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCC
Confidence            444432111     123566666  664 54 45667778999999987655

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.57  E-value=11  Score=32.09  Aligned_cols=93  Identities=13%  Similarity=0.040  Sum_probs=60.9

Q ss_pred             ceEEEEEeCCCCEEEEEeCCcEEEEEccCCceeEEEeccCCCeeEEEEeeeCCeEEEEecCCCCCCCCCeEEEEECCCCC
Q 014977           46 ELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSR  125 (415)
Q Consensus        46 ~V~~l~~sp~g~~la~g~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~~~~~~i~vwd~~~~~  125 (415)
                      .|..++|+.|  .|++..++.+..++...........  .-...+..+.+.++...++...       +.+.++++..++
T Consensus        88 ~v~~vafs~d--~l~v~~~~~l~~~~~~~l~~~~~~~--~~~~~~~~~~~~p~~~~l~~~~-------~~~~~~~l~~~~  156 (381)
T d1xipa_          88 DVIFVCFHGD--QVLVSTRNALYSLDLEELSEFRTVT--SFEKPVFQLKNVNNTLVILNSV-------NDLSALDLRTKS  156 (381)
T ss_dssp             TEEEEEEETT--EEEEEESSEEEEEESSSTTCEEEEE--ECSSCEEEEEECSSEEEEEETT-------SEEEEEETTTCC
T ss_pred             CeEEEEeeCC--EEEEEeCCCEEEEEeeccccccccc--cccccccceecCCceeEEEecC-------CCEEEEEeccCc
Confidence            5899999855  6777777888888887644433322  2345577888888887776643       889999998886


Q ss_pred             EEEEEE------ccCceeEEEEcCCeEEEE
Q 014977          126 CIGEFA------FRSDVRSVKLSRDRIVVV  149 (415)
Q Consensus       126 ~~~~~~------~~~~i~~l~~~~~~~~~~  149 (415)
                      ......      -...+.++.|++.++.++
T Consensus       157 ~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v  186 (381)
T d1xipa_         157 TKQLAQNVTSFDVTNSQLAVLLKDRSFQSF  186 (381)
T ss_dssp             EEEEEESEEEEEECSSEEEEEETTSCEEEE
T ss_pred             cccccCCcceEEecCCceEEEEeCCcEEEE
Confidence            433221      234455566665555444