Citrus Sinensis ID: 014982

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-----
MTMQRIISKSRLDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFLGPYLLLFAACLMELAAQSSKGIYKEIPRRPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTYAACRLGFAMFFYLMFYLLVTMTFLLNTWFSGFLVLSFSM
ccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccccccHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
cccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEccccccccccccccHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEcc
MTMQRIISKSRLDAFASVFVTLHphetsallhsssCFFFILSAYFVVLplrdegaislglsklpglfvGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSssigylsklesvSHLESLDavssnakedpkaavdqgstansadwgdhgWFYVSVRMGFFLWVALLNLITISSTWARVIDVmdsesgsrlfgfigAGATLGQLFGSLFAAGMAFLGPYLLLFAACLMELAAQSSkgiykeiprrpeelpplrkadsdprsgadgqtapaakvpsprsstsivkpHLWAILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTYAACRLGFAMFFYLMFYLLVTMTFLLNTWFSGFLVLSFSM
mtmqriisksrlDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFLGPYLLLFAACLMELAAQSSkgiykeiprrpeelpplrkadsdprsgadgqtapaakvpsprsstsiVKPHLWAILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTYAACRLGFAMFFYLMFYLLVTMTFLLNTWFSGFLVLSFSM
MTMQRIISKSRLDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRffsvsllvffllwqsssIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFLGPYLLLFAACLMELAAQSSKGIYKEIprrpeelpplrKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTYAACRLGFAmffylmfyllVTMTFLLNTWFSGFLVLSFSM
**********RLDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLE*******************************ADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFLGPYLLLFAACLMELAAQ************************************************IVKPHLWAILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTYAACRLGFAMFFYLMFYLLVTMTFLLNTWFSGFLVLSF**
**************FASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFLGPYLLLFAACLMELAAQSSKGIYKEIPRRPEELP***************************************ILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTYAACRLGFAMFFYLMFYLLVTMTFLLNTWFSGFLVLSFSM
********KSRLDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHL***********************ANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFLGPYLLLFAACLMELAAQSSKGIYKEIPRRPEELP*******************************IVKPHLWAILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTYAACRLGFAMFFYLMFYLLVTMTFLLNTWFSGFLVLSFSM
****RIISKSRLDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSN*KED*KAAV******NSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFLGPYLLLFAACLMELAAQSSKGIYKEIPRRPEELPPLRKA***************************VKPHLWAILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTYAACRLGFAMFFYLMFYLLVTMTFLLNTWFSGFLVLSFSM
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiii
ooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooo
oooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoo
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MTMQRIISKSRLDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFLGPYLLLFAACLMELAAQSSKGIYKEIPRRPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTYAACRLGFAMFFYLMFYLLVTMTFLLNTWFSGFLVLSFSM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query415
297736512503 unnamed protein product [Vitis vinifera] 0.874 0.721 0.744 1e-137
449516782490 PREDICTED: uncharacterized protein LOC10 0.843 0.714 0.691 1e-136
449457421490 PREDICTED: uncharacterized protein LOC10 0.843 0.714 0.691 1e-136
225448643492 PREDICTED: uncharacterized protein LOC10 0.848 0.715 0.728 1e-133
392938140507 plasma membrane ATP/ADP transporter TLC1 0.862 0.706 0.648 1e-127
42567662496 TLC ATP/ADP transporter [Arabidopsis tha 0.848 0.709 0.663 1e-126
297806531499 hypothetical protein ARALYDRAFT_487324 [ 0.855 0.711 0.664 1e-125
10176743496 unnamed protein product [Arabidopsis tha 0.848 0.709 0.658 1e-125
30680874511 TLC ATP/ADP transporter [Arabidopsis tha 0.848 0.688 0.658 1e-125
30680867469 TLC ATP/ADP transporter [Arabidopsis tha 0.848 0.750 0.658 1e-125
>gi|297736512|emb|CBI25383.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  493 bits (1269), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 274/368 (74%), Positives = 303/368 (82%), Gaps = 5/368 (1%)

Query: 8   SKSRLDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLF 67
           ++S L    S+FVT+HPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLF
Sbjct: 3   ARSYLHGILSMFVTVHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLF 62

Query: 68  VGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLES 127
           VGSL LTL+AAPVSTLIFSLPNLSKAKALVLIHRFFSVSL+VFF+LW SSS        S
Sbjct: 63  VGSLALTLVAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLVVFFVLWHSSS-----AGHS 117

Query: 128 VSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITIS 187
            S  +  D VSS  KED +  V Q    +S  W  HGWFYV VR+G FLWV+LLNLITIS
Sbjct: 118 SSKWKGSDFVSSTLKEDSEVDVSQPGAEHSVSWDVHGWFYVLVRIGLFLWVSLLNLITIS 177

Query: 188 STWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFLGPYLLLFAACLMELAAQ 247
           STWAR+IDVMDSESG RLFGFIGAGATLGQLFGSLFA GMA+LGP+LLLFAA LMELAAQ
Sbjct: 178 STWARIIDVMDSESGLRLFGFIGAGATLGQLFGSLFATGMAWLGPFLLLFAALLMELAAQ 237

Query: 248 SSKGIYKEIPRRPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDG 307
           SSKGI + I    EE+  +RKAD D ++ ADGQ AP  K  SP+S TS++ P +WA+LDG
Sbjct: 238 SSKGIIRHISHTSEEMSLIRKADPDQQNEADGQAAPVKKGSSPKSPTSLMNPQIWAMLDG 297

Query: 308 LRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFI 367
           LRLI SS YLL VSLFLWLSAVVSSFFYFQKVTVIAMTVS+ + RR+L A+INSFIAVFI
Sbjct: 298 LRLILSSTYLLYVSLFLWLSAVVSSFFYFQKVTVIAMTVSTPVERRKLFAQINSFIAVFI 357

Query: 368 LAGQLTLT 375
           LAGQLTLT
Sbjct: 358 LAGQLTLT 365

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449516782|ref|XP_004165425.1| PREDICTED: uncharacterized protein LOC101229022 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449457421|ref|XP_004146447.1| PREDICTED: uncharacterized protein LOC101212005 [Cucumis sativus] Back     alignment and taxonomy information
>gi|225448643|ref|XP_002279449.1| PREDICTED: uncharacterized protein LOC100258787 [Vitis vinifera] Back     alignment and taxonomy information
>gi|392938140|gb|AFM94007.1| plasma membrane ATP/ADP transporter TLC1 [Beta vulgaris] Back     alignment and taxonomy information
>gi|42567662|ref|NP_196150.2| TLC ATP/ADP transporter [Arabidopsis thaliana] gi|332003472|gb|AED90855.1| TLC ATP/ADP transporter [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297806531|ref|XP_002871149.1| hypothetical protein ARALYDRAFT_487324 [Arabidopsis lyrata subsp. lyrata] gi|297316986|gb|EFH47408.1| hypothetical protein ARALYDRAFT_487324 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|10176743|dbj|BAB09974.1| unnamed protein product [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30680874|ref|NP_850772.1| TLC ATP/ADP transporter [Arabidopsis thaliana] gi|332003473|gb|AED90856.1| TLC ATP/ADP transporter [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30680867|ref|NP_850771.1| TLC ATP/ADP transporter [Arabidopsis thaliana] gi|332003471|gb|AED90854.1| TLC ATP/ADP transporter [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query415
TAIR|locus:2153489 511 AT5G05310 [Arabidopsis thalian 0.848 0.688 0.626 1.2e-111
TAIR|locus:2153489 AT5G05310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1102 (393.0 bits), Expect = 1.2e-111, P = 1.2e-111
 Identities = 233/372 (62%), Positives = 271/372 (72%)

Query:     8 SKSRLDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLF 67
             ++ RLDA  S  VT+HPHE  ALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLF
Sbjct:     3 ARIRLDAVISTIVTVHPHELPALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKLPGLF 62

Query:    68 VGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRXXXXXXXXXXXXXXXXXIGYLSKLES 127
             VGSL LTLIAAP+ST IFSLPNLSK+KALV+IHR                 + +L  + S
Sbjct:    63 VGSLFLTLIAAPLSTFIFSLPNLSKSKALVIIHRFFSLSLV----------LCFLLWMAS 112

Query:   128 VSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITIS 187
              +   S DAV     E      + G+ A +  W +HGWFY+SVR+GFFLWVALLNL+ IS
Sbjct:   113 PTESNSKDAV-----EAASGLTNDGANA-ATGWDNHGWFYISVRVGFFLWVALLNLVAIS 166

Query:   188 STWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFLGPYLLLFAACLMELAAQ 247
             STWAR+IDVMD +SG+RLFGF+GAGATLGQLFGS+FAA  A++GPYLLLFAA LME AAQ
Sbjct:   167 STWARIIDVMDIQSGARLFGFVGAGATLGQLFGSVFAAATAWMGPYLLLFAALLMEFAAQ 226

Query:   248 SSKGIYKEIXXXXXXXXXXXKADSD-PRSGADGQTAP---AAKVPSPRSSTSIVKPHLWA 303
             SSKGI  +I             D+D  R      T+P   + KV SP+S  S  +P  WA
Sbjct:   227 SSKGITNDISQSSEELSPLRGTDNDHQRERKQEATSPKVGSPKVASPKSPISTTRPQFWA 286

Query:   304 ILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFI 363
             ILDG+RLI +S YLL VSLFLWL AV+SSFFYFQKV +IA T+ SS+GRRRL A+INSF+
Sbjct:   287 ILDGMRLILASPYLLLVSLFLWLGAVISSFFYFQKVNIIATTIKSSIGRRRLFAQINSFV 346

Query:   364 AVFILAGQLTLT 375
             AVFIL GQLTLT
Sbjct:   347 AVFILIGQLTLT 358


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.136   0.400    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      415       377   0.00089  117 3  11 22  0.45    33
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  616 (65 KB)
  Total size of DFA:  209 KB (2115 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  28.52u 0.12s 28.64t   Elapsed:  00:00:02
  Total cpu time:  28.52u 0.12s 28.64t   Elapsed:  00:00:02
  Start:  Tue May 21 02:46:51 2013   End:  Tue May 21 02:46:53 2013
GO:0005471 "ATP:ADP antiporter activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005886 "plasma membrane" evidence=ISM
GO:0006810 "transport" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM
GO:0016021 "integral to membrane" evidence=IEA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00029415001
SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (503 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query415
COG3202 509 COG3202, COG3202, ATP/ADP translocase [Energy prod 3e-05
>gnl|CDD|225743 COG3202, COG3202, ATP/ADP translocase [Energy production and conversion] Back     alignment and domain information 
 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 58/403 (14%), Positives = 114/403 (28%), Gaps = 90/403 (22%)

Query: 2   TMQRIISKSRLDAFASVFVTLHPHETSALLHSSSCFFFILSAYFVVLPLRDE------GA 55
            M     +       S    +  +E    L  +  FF IL  Y ++  L+D       GA
Sbjct: 1   MMSTSEEEKYFSKLRSRLWPIRRYELKKFLPLALLFFCILFNYNLLRSLKDSLVVTRQGA 60

Query: 56  ISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVF-FLLW 114
            S+   K  G+   ++I T+I   +  +      L++ K   +I  FF     +F F+++
Sbjct: 61  ESISFLKTWGVLPSAVIFTIIYQKLLNI------LTREKVFYIILGFFLGFFALFAFVIY 114

Query: 115 QSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHG-----WFYVS 169
                                         P   +       S D          WF + 
Sbjct: 115 ------------------------------PYKDILHPDPEFSRDLFADLPMFLKWFILI 144

Query: 170 VR----MGFFLWVALLNLITISST-WARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFA 224
           V       F++   L   + +S   W    ++   E   R +   G GA +  L      
Sbjct: 145 VGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVT 204

Query: 225 AGMAFLGPYLLLFAACLM------------ELAAQSSKGIYKEIPRRPEELPPLRKADSD 272
           + ++     L      L+             +A    + I + +   P      +K    
Sbjct: 205 SWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLFYLRAKKKKKK 264

Query: 273 PRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFSSNYLLSVSLFLWLSAVVSS 332
            +                             +++  ++I  S YL +++L +    V  +
Sbjct: 265 KKLKL-------------------------GLIESFKMILRSKYLGAIALLVLAYGVSIN 299

Query: 333 FFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLT 375
                  + I     ++      +     +  V  L   L   
Sbjct: 300 LVEGVWKSGIKELYPTTNEYTAFMGRFQIWTGVVSLVVFLFPG 342

Length = 509

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 415
TIGR00769 472 AAA ADP/ATP carrier protein family. These proteins 100.0
PF03219 491 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 100.0
COG3202 509 ATP/ADP translocase [Energy production and convers 100.0
TIGR00900365 2A0121 H+ Antiporter protein. 98.93
PRK11195393 lysophospholipid transporter LplT; Provisional 98.85
PRK15402406 multidrug efflux system translocase MdfA; Provisio 98.76
PRK09528420 lacY galactoside permease; Reviewed 98.75
PF07690352 MFS_1: Major Facilitator Superfamily; InterPro: IP 98.74
TIGR00710385 efflux_Bcr_CflA drug resistance transporter, Bcr/C 98.74
PRK09874408 drug efflux system protein MdtG; Provisional 98.72
PRK03545390 putative arabinose transporter; Provisional 98.68
TIGR00882396 2A0105 oligosaccharide:H+ symporter. 98.67
PRK10054395 putative transporter; Provisional 98.66
TIGR00893399 2A0114 d-galactonate transporter. 98.63
PF01306412 LacY_symp: LacY proton/sugar symporter; InterPro: 98.63
PF05977 524 MFS_3: Transmembrane secretion effector; InterPro: 98.55
PRK10504 471 putative transporter; Provisional 98.54
TIGR00881379 2A0104 phosphoglycerate transporter family protein 98.53
PRK11102377 bicyclomycin/multidrug efflux system; Provisional 98.51
PRK11652394 emrD multidrug resistance protein D; Provisional 98.49
PRK11128382 putative 3-phenylpropionic acid transporter; Provi 98.48
PRK10473392 multidrug efflux system protein MdtL; Provisional 98.47
PRK11646400 multidrug resistance protein MdtH; Provisional 98.46
TIGR00901356 2A0125 AmpG-related permease. 98.35
TIGR00895398 2A0115 benzoate transport. 98.34
TIGR00891405 2A0112 putative sialic acid transporter. 98.33
PRK06814 1140 acylglycerophosphoethanolamine acyltransferase; Pr 98.33
PRK10489417 enterobactin exporter EntS; Provisional 98.32
PRK12307426 putative sialic acid transporter; Provisional 98.32
PRK08633 1146 2-acyl-glycerophospho-ethanolamine acyltransferase 98.3
TIGR00897402 2A0118 polyol permease family. This family of prot 98.29
PRK11902402 ampG muropeptide transporter; Reviewed 98.29
TIGR00886366 2A0108 nitrite extrusion protein (nitrite facilita 98.28
PRK11043401 putative transporter; Provisional 98.28
PRK11663434 regulatory protein UhpC; Provisional 98.27
PRK11551406 putative 3-hydroxyphenylpropionic transporter MhpT 98.27
TIGR00902382 2A0127 phenyl proprionate permease family protein. 98.26
TIGR00712438 glpT glycerol-3-phosphate transporter. This model 98.24
TIGR00890377 2A0111 Oxalate/Formate Antiporter. 98.21
PRK10091382 MFS transport protein AraJ; Provisional 98.2
PRK10213394 nepI ribonucleoside transporter; Reviewed 98.19
PRK11010 491 ampG muropeptide transporter; Validated 98.18
PRK15403413 multidrug efflux system protein MdtM; Provisional 98.15
TIGR00711 485 efflux_EmrB drug resistance transporter, EmrB/QacA 98.15
cd06174352 MFS The Major Facilitator Superfamily (MFS) is a l 98.12
PRK09556467 uhpT sugar phosphate antiporter; Reviewed 98.11
TIGR00792 437 gph sugar (Glycoside-Pentoside-Hexuronide) transpo 98.07
PRK14995 495 methyl viologen resistance protein SmvA; Provision 98.05
PRK11273452 glpT sn-glycerol-3-phosphate transporter; Provisio 98.05
TIGR00899375 2A0120 sugar efflux transporter. This family of pr 98.04
PRK03699394 putative transporter; Provisional 98.02
PRK12382392 putative transporter; Provisional 97.9
PLN00028476 nitrate transmembrane transporter; Provisional 97.9
PRK10429 473 melibiose:sodium symporter; Provisional 97.88
PRK10133438 L-fucose transporter; Provisional 97.87
PRK03633381 putative MFS family transporter protein; Provision 97.87
PRK11462 460 putative transporter; Provisional 97.87
TIGR02332412 HpaX 4-hydroxyphenylacetate permease. This protein 97.78
TIGR00879 481 SP MFS transporter, sugar porter (SP) family. This 97.77
TIGR00896355 CynX cyanate transporter. This family of proteins 97.76
PRK05122399 major facilitator superfamily transporter; Provisi 97.74
TIGR00903368 2A0129 major facilitator 4 family protein. This fa 97.72
PRK03893 496 putative sialic acid transporter; Provisional 97.71
COG2814394 AraJ Arabinose efflux permease [Carbohydrate trans 97.6
TIGR00883394 2A0106 metabolite-proton symporter. This model rep 97.59
TIGR00894465 2A0114euk Na(+)-dependent inorganic phosphate cotr 97.58
TIGR00898505 2A0119 cation transport protein. 97.57
PRK09669444 putative symporter YagG; Provisional 97.55
TIGR00885410 fucP L-fucose:H+ symporter permease. This family d 97.51
TIGR00892455 2A0113 monocarboxylate transporter 1. 97.51
TIGR00889 418 2A0110 nucleoside transporter. This family of prot 97.41
PRK09705393 cynX putative cyanate transporter; Provisional 97.39
TIGR00805 633 oat sodium-independent organic anion transporter. 97.36
PF13347 428 MFS_2: MFS/sugar transport protein 97.33
PRK10489417 enterobactin exporter EntS; Provisional 97.3
TIGR01301 477 GPH_sucrose GPH family sucrose/H+ symporter. This 97.27
TIGR01299 742 synapt_SV2 synaptic vesicle protein SV2. This mode 97.17
PRK15034462 nitrate/nitrite transport protein NarU; Provisiona 97.16
PRK09584 500 tppB putative tripeptide transporter permease; Rev 97.16
PRK11551406 putative 3-hydroxyphenylpropionic transporter MhpT 97.12
TIGR00924 475 yjdL_sub1_fam amino acid/peptide transporter (Pept 97.09
PRK09848 448 glucuronide transporter; Provisional 96.97
TIGR00880141 2_A_01_02 Multidrug resistance protein. 96.96
PRK03893496 putative sialic acid transporter; Provisional 96.89
PRK10207 489 dipeptide/tripeptide permease B; Provisional 96.83
PRK09952438 shikimate transporter; Provisional 96.74
TIGR01299742 synapt_SV2 synaptic vesicle protein SV2. This mode 96.73
PRK15462 493 dipeptide/tripeptide permease D; Provisional 96.72
PRK05122399 major facilitator superfamily transporter; Provisi 96.64
TIGR00883394 2A0106 metabolite-proton symporter. This model rep 96.57
PRK15011393 sugar efflux transporter B; Provisional 96.4
cd06174352 MFS The Major Facilitator Superfamily (MFS) is a l 96.4
PRK15075434 citrate-proton symporter; Provisional 96.39
PRK10406432 alpha-ketoglutarate transporter; Provisional 96.38
PF05977524 MFS_3: Transmembrane secretion effector; InterPro: 96.35
PRK11902402 ampG muropeptide transporter; Reviewed 96.28
TIGR00890377 2A0111 Oxalate/Formate Antiporter. 96.23
TIGR00893399 2A0114 d-galactonate transporter. 96.23
PRK12307426 putative sialic acid transporter; Provisional 96.19
PF03825400 Nuc_H_symport: Nucleoside H+ symporter 96.16
TIGR00899375 2A0120 sugar efflux transporter. This family of pr 96.15
TIGR02718390 sider_RhtX_FptX siderophore transporter, RhtX/FptX 96.11
PRK09705393 cynX putative cyanate transporter; Provisional 96.1
PRK15011393 sugar efflux transporter B; Provisional 96.01
PF11700477 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 95.87
TIGR00879481 SP MFS transporter, sugar porter (SP) family. This 95.84
TIGR00895398 2A0115 benzoate transport. 95.84
PRK11010491 ampG muropeptide transporter; Validated 95.81
PRK03633381 putative MFS family transporter protein; Provision 95.8
TIGR00892455 2A0113 monocarboxylate transporter 1. 95.77
KOG2533 495 consensus Permease of the major facilitator superf 95.7
PRK09528420 lacY galactoside permease; Reviewed 95.69
PRK03699394 putative transporter; Provisional 95.63
PRK12382392 putative transporter; Provisional 95.56
PRK10642 490 proline/glycine betaine transporter; Provisional 95.47
TIGR00900365 2A0121 H+ Antiporter protein. 95.42
PF07690352 MFS_1: Major Facilitator Superfamily; InterPro: IP 95.41
PRK09874408 drug efflux system protein MdtG; Provisional 95.39
TIGR00806 511 rfc RFC reduced folate carrier. Proteins of the RF 95.34
TIGR02718390 sider_RhtX_FptX siderophore transporter, RhtX/FptX 95.21
TIGR00898505 2A0119 cation transport protein. 95.2
PRK10406432 alpha-ketoglutarate transporter; Provisional 95.15
PRK09952438 shikimate transporter; Provisional 95.1
TIGR00889418 2A0110 nucleoside transporter. This family of prot 94.83
TIGR00792437 gph sugar (Glycoside-Pentoside-Hexuronide) transpo 94.8
PRK10077 479 xylE D-xylose transporter XylE; Provisional 94.78
TIGR00891405 2A0112 putative sialic acid transporter. 94.76
PRK11273452 glpT sn-glycerol-3-phosphate transporter; Provisio 94.76
PRK15402406 multidrug efflux system translocase MdfA; Provisio 94.7
PRK10077479 xylE D-xylose transporter XylE; Provisional 94.37
TIGR00897402 2A0118 polyol permease family. This family of prot 94.35
PTZ00207 591 hypothetical protein; Provisional 94.29
PRK11663434 regulatory protein UhpC; Provisional 94.27
PRK09669444 putative symporter YagG; Provisional 94.15
COG2211467 MelB Na+/melibiose symporter and related transport 94.09
PRK09556467 uhpT sugar phosphate antiporter; Reviewed 94.06
TIGR00896355 CynX cyanate transporter. This family of proteins 93.96
TIGR00881379 2A0104 phosphoglycerate transporter family protein 93.87
PF13347428 MFS_2: MFS/sugar transport protein 93.7
PRK10504471 putative transporter; Provisional 93.66
PF05631354 DUF791: Protein of unknown function (DUF791); Inte 93.54
COG2211 467 MelB Na+/melibiose symporter and related transport 93.53
PF11700477 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 93.33
TIGR01272310 gluP glucose/galactose transporter. Disruption of 93.05
PRK15075434 citrate-proton symporter; Provisional 92.94
PRK08633 1146 2-acyl-glycerophospho-ethanolamine acyltransferase 92.93
TIGR00903368 2A0129 major facilitator 4 family protein. This fa 92.83
TIGR00902382 2A0127 phenyl proprionate permease family protein. 92.71
PRK03545390 putative arabinose transporter; Provisional 92.66
TIGR00710385 efflux_Bcr_CflA drug resistance transporter, Bcr/C 92.55
PRK11128382 putative 3-phenylpropionic acid transporter; Provi 92.4
TIGR00882396 2A0105 oligosaccharide:H+ symporter. 92.32
PRK06814 1140 acylglycerophosphoethanolamine acyltransferase; Pr 92.31
PRK10429473 melibiose:sodium symporter; Provisional 92.25
TIGR00788 468 fbt folate/biopterin transporter. The only functio 92.0
KOG1330 493 consensus Sugar transporter/spinster transmembrane 91.88
PRK09848448 glucuronide transporter; Provisional 91.49
PLN00028476 nitrate transmembrane transporter; Provisional 91.04
PRK10091382 MFS transport protein AraJ; Provisional 90.98
PRK10642490 proline/glycine betaine transporter; Provisional 90.72
TIGR00711485 efflux_EmrB drug resistance transporter, EmrB/QacA 90.46
KOG2615451 consensus Permease of the major facilitator superf 89.81
KOG0569485 consensus Permease of the major facilitator superf 89.81
KOG3626 735 consensus Organic anion transporter [Secondary met 89.02
PRK15034462 nitrate/nitrite transport protein NarU; Provisiona 88.68
TIGR00924475 yjdL_sub1_fam amino acid/peptide transporter (Pept 88.49
PRK10054395 putative transporter; Provisional 88.45
TIGR02332412 HpaX 4-hydroxyphenylacetate permease. This protein 88.4
TIGR00886366 2A0108 nitrite extrusion protein (nitrite facilita 87.54
TIGR00901356 2A0125 AmpG-related permease. 86.6
COG2270438 Permeases of the major facilitator superfamily [Ge 86.33
PRK11195393 lysophospholipid transporter LplT; Provisional 85.94
TIGR00887502 2A0109 phosphate:H+ symporter. This model represen 85.73
KOG3764464 consensus Vesicular amine transporter [Intracellul 85.15
KOG2325 488 consensus Predicted transporter/transmembrane prot 84.72
KOG2816463 consensus Predicted transporter ADD1 (major facili 84.6
PF01770412 Folate_carrier: Reduced folate carrier; InterPro: 83.99
COG2223417 NarK Nitrate/nitrite transporter [Inorganic ion tr 83.83
PRK14995495 methyl viologen resistance protein SmvA; Provision 83.75
COG2271448 UhpC Sugar phosphate permease [Carbohydrate transp 83.44
TIGR00887 502 2A0109 phosphate:H+ symporter. This model represen 83.44
TIGR00712438 glpT glycerol-3-phosphate transporter. This model 83.14
COG2814394 AraJ Arabinose efflux permease [Carbohydrate trans 82.81
TIGR00788468 fbt folate/biopterin transporter. The only functio 82.78
PRK11462 460 putative transporter; Provisional 81.91
PF03092 433 BT1: BT1 family; InterPro: IPR004324 Members of th 80.63
>TIGR00769 AAA ADP/ATP carrier protein family Back     alignment and domain information 
Probab=100.00  E-value=2.9e-65  Score=532.76  Aligned_cols=326  Identities=15%  Similarity=0.160  Sum_probs=271.2

Q ss_pred             cCcCchhHHHHHHHHHHHHHHHHHHhhhhhhhhhcc---cCcCchhhHHHHH-HHHHHHHHHHHHHHhcCCCCCchhHHH
Q 014982           22 LHPHETSALLHSSSCFFFILSAYFVVLPLRDEGAIS---LGLSKLPGLFVGS-LILTLIAAPVSTLIFSLPNLSKAKALV   97 (415)
Q Consensus        22 i~~~E~~~~l~~~l~~F~Il~~y~iLRpirDsl~vs---~Gae~LP~l~~~t-~~~~ll~~~lys~L~~~~r~sr~rl~~   97 (415)
                      |||+|.+|++|+++++||++++|+++||+||+++++   .|+|+|||+|+++ +|++++++++|+|++|  |+||+|+++
T Consensus         1 ~~~~E~~k~~~~~l~fF~il~~Y~iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~--~~~~~~lf~   78 (472)
T TIGR00769         1 IEVHELKKFLPLFLMFFCILFNYTILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSN--ILSKEALFY   78 (472)
T ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh--cCCHHHhHH
Confidence            699999999999999999999999999999999996   5999999999977 7788888999999999  999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhhhhccccccCCCccccccCCCCCCccccccccchhhhhHHHHHH
Q 014982           98 LIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLW  177 (415)
Q Consensus        98 ~i~~fF~~~ll~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~W~y~~~~~~FYiw  177 (415)
                      +++++|++++++|++++++..+.+||                +..+|.++...|++..+. .-+.++|+++    +||+|
T Consensus        79 ~~~~~F~~~f~lF~~vl~p~~~~~~p----------------~~~~~~~~~~~~~~~~~~-i~~~~~W~~~----~FYv~  137 (472)
T TIGR00769        79 TVISPFLGFFALFAFVIYPLSDLLHP----------------TALADKLLSLLPPGFMGF-IAILRIWSFA----LFYVM  137 (472)
T ss_pred             HHHHHHHHHHHHHHHHHhcchhhcCC----------------cHHHHHHHhhcchhhHHH-HHHHhhhhHH----HHHHH
Confidence            99999999999999999988544443                333444444443233222 1125899998    89999


Q ss_pred             HHHHHHHHHH-HHHHHHHhhcCccchhHHHHHHHHHHhHHHHHhHHHHHHHHH--------HhH------HHHHHHHHHH
Q 014982          178 VALLNLITIS-STWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAF--------LGP------YLLLFAACLM  242 (415)
Q Consensus       178 ~~vfnl~~~s-lFWsfandif~~~eAKRlygli~aGg~lG~I~Gg~l~~~la~--------~g~------~Lllvaa~ll  242 (415)
                      .|+||++++| +||+++||+|+.|||||+||++++|||+|+++||.++.+++.        .++      +++.++++++
T Consensus       138 ~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~  217 (472)
T TIGR00769       138 AELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSG  217 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHH
Confidence            9999999999 999999999999999999999999999999999999998862        122      2455555555


Q ss_pred             HHHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcccchHhhHHHHhhchHHHHHHH
Q 014982          243 ELAAQSSKGIYKEIPRRPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFSSNYLLSVSL  322 (415)
Q Consensus       243 ~la~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~g~~~I~~S~YL~~Ia~  322 (415)
                      ++++.+.+++.|+...             +|+.. +..           + .++|+++|+|+.||+|+++|||||++||+
T Consensus       218 ~~~~~~~~~l~~~~~~-------------~~~~~-~~~-----------~-~~~k~k~k~~~~es~k~i~~S~yL~~ia~  271 (472)
T TIGR00769       218 LAIILLYWWVNRNVLT-------------DPRSY-NPA-----------L-KEKKVKPKMSTMESLKFLVSSPYILDLAL  271 (472)
T ss_pred             HHHHHHHHHHHhcccC-------------Ccccc-chh-----------h-ccccCCCCCCHHHHHHHHHhCHHHHHHHH
Confidence            6666666666554321             22111 100           0 01233448999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcHHHHHHHHHHHHHH
Q 014982          323 FLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTYAACRLGFAMFFYLMFYLLVT  396 (415)
Q Consensus       323 ~v~l~~v~~tlv~f~~~~~v~~~~~d~~~~t~f~g~~~~~~~i~tl~~qlf~t~iirrlG~~~~l~~m~~~~~~  396 (415)
                      ++++|++++|++|++||+++++.|||++||++|||+++.++|++|+++|++.++++||+||+.+..++|.....
T Consensus       272 ~vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~li  345 (472)
T TIGR00769       272 LVIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLL  345 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999994489999999999999976655

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions Back     alignment and domain information
>COG3202 ATP/ADP translocase [Energy production and conversion] Back     alignment and domain information
>TIGR00900 2A0121 H+ Antiporter protein Back     alignment and domain information
>PRK11195 lysophospholipid transporter LplT; Provisional Back     alignment and domain information
>PRK15402 multidrug efflux system translocase MdfA; Provisional Back     alignment and domain information
>PRK09528 lacY galactoside permease; Reviewed Back     alignment and domain information
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms Back     alignment and domain information
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily Back     alignment and domain information
>PRK09874 drug efflux system protein MdtG; Provisional Back     alignment and domain information
>PRK03545 putative arabinose transporter; Provisional Back     alignment and domain information
>TIGR00882 2A0105 oligosaccharide:H+ symporter Back     alignment and domain information
>PRK10054 putative transporter; Provisional Back     alignment and domain information
>TIGR00893 2A0114 d-galactonate transporter Back     alignment and domain information
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] Back     alignment and domain information
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily Back     alignment and domain information
>PRK10504 putative transporter; Provisional Back     alignment and domain information
>TIGR00881 2A0104 phosphoglycerate transporter family protein Back     alignment and domain information
>PRK11102 bicyclomycin/multidrug efflux system; Provisional Back     alignment and domain information
>PRK11652 emrD multidrug resistance protein D; Provisional Back     alignment and domain information
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional Back     alignment and domain information
>PRK10473 multidrug efflux system protein MdtL; Provisional Back     alignment and domain information
>PRK11646 multidrug resistance protein MdtH; Provisional Back     alignment and domain information
>TIGR00901 2A0125 AmpG-related permease Back     alignment and domain information
>TIGR00895 2A0115 benzoate transport Back     alignment and domain information
>TIGR00891 2A0112 putative sialic acid transporter Back     alignment and domain information
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional Back     alignment and domain information
>PRK10489 enterobactin exporter EntS; Provisional Back     alignment and domain information
>PRK12307 putative sialic acid transporter; Provisional Back     alignment and domain information
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated Back     alignment and domain information
>TIGR00897 2A0118 polyol permease family Back     alignment and domain information
>PRK11902 ampG muropeptide transporter; Reviewed Back     alignment and domain information
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) Back     alignment and domain information
>PRK11043 putative transporter; Provisional Back     alignment and domain information
>PRK11663 regulatory protein UhpC; Provisional Back     alignment and domain information
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional Back     alignment and domain information
>TIGR00902 2A0127 phenyl proprionate permease family protein Back     alignment and domain information
>TIGR00712 glpT glycerol-3-phosphate transporter Back     alignment and domain information
>TIGR00890 2A0111 Oxalate/Formate Antiporter Back     alignment and domain information
>PRK10091 MFS transport protein AraJ; Provisional Back     alignment and domain information
>PRK10213 nepI ribonucleoside transporter; Reviewed Back     alignment and domain information
>PRK11010 ampG muropeptide transporter; Validated Back     alignment and domain information
>PRK15403 multidrug efflux system protein MdtM; Provisional Back     alignment and domain information
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily Back     alignment and domain information
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters Back     alignment and domain information
>PRK09556 uhpT sugar phosphate antiporter; Reviewed Back     alignment and domain information
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter Back     alignment and domain information
>PRK14995 methyl viologen resistance protein SmvA; Provisional Back     alignment and domain information
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional Back     alignment and domain information
>TIGR00899 2A0120 sugar efflux transporter Back     alignment and domain information
>PRK03699 putative transporter; Provisional Back     alignment and domain information
>PRK12382 putative transporter; Provisional Back     alignment and domain information
>PLN00028 nitrate transmembrane transporter; Provisional Back     alignment and domain information
>PRK10429 melibiose:sodium symporter; Provisional Back     alignment and domain information
>PRK10133 L-fucose transporter; Provisional Back     alignment and domain information
>PRK03633 putative MFS family transporter protein; Provisional Back     alignment and domain information
>PRK11462 putative transporter; Provisional Back     alignment and domain information
>TIGR02332 HpaX 4-hydroxyphenylacetate permease Back     alignment and domain information
>TIGR00879 SP MFS transporter, sugar porter (SP) family Back     alignment and domain information
>TIGR00896 CynX cyanate transporter Back     alignment and domain information
>PRK05122 major facilitator superfamily transporter; Provisional Back     alignment and domain information
>TIGR00903 2A0129 major facilitator 4 family protein Back     alignment and domain information
>PRK03893 putative sialic acid transporter; Provisional Back     alignment and domain information
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00883 2A0106 metabolite-proton symporter Back     alignment and domain information
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter Back     alignment and domain information
>TIGR00898 2A0119 cation transport protein Back     alignment and domain information
>PRK09669 putative symporter YagG; Provisional Back     alignment and domain information
>TIGR00885 fucP L-fucose:H+ symporter permease Back     alignment and domain information
>TIGR00892 2A0113 monocarboxylate transporter 1 Back     alignment and domain information
>TIGR00889 2A0110 nucleoside transporter Back     alignment and domain information
>PRK09705 cynX putative cyanate transporter; Provisional Back     alignment and domain information
>TIGR00805 oat sodium-independent organic anion transporter Back     alignment and domain information
>PF13347 MFS_2: MFS/sugar transport protein Back     alignment and domain information
>PRK10489 enterobactin exporter EntS; Provisional Back     alignment and domain information
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter Back     alignment and domain information
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2 Back     alignment and domain information
>PRK15034 nitrate/nitrite transport protein NarU; Provisional Back     alignment and domain information
>PRK09584 tppB putative tripeptide transporter permease; Reviewed Back     alignment and domain information
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional Back     alignment and domain information
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial Back     alignment and domain information
>PRK09848 glucuronide transporter; Provisional Back     alignment and domain information
>TIGR00880 2_A_01_02 Multidrug resistance protein Back     alignment and domain information
>PRK03893 putative sialic acid transporter; Provisional Back     alignment and domain information
>PRK10207 dipeptide/tripeptide permease B; Provisional Back     alignment and domain information
>PRK09952 shikimate transporter; Provisional Back     alignment and domain information
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2 Back     alignment and domain information
>PRK15462 dipeptide/tripeptide permease D; Provisional Back     alignment and domain information
>PRK05122 major facilitator superfamily transporter; Provisional Back     alignment and domain information
>TIGR00883 2A0106 metabolite-proton symporter Back     alignment and domain information
>PRK15011 sugar efflux transporter B; Provisional Back     alignment and domain information
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters Back     alignment and domain information
>PRK15075 citrate-proton symporter; Provisional Back     alignment and domain information
>PRK10406 alpha-ketoglutarate transporter; Provisional Back     alignment and domain information
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily Back     alignment and domain information
>PRK11902 ampG muropeptide transporter; Reviewed Back     alignment and domain information
>TIGR00890 2A0111 Oxalate/Formate Antiporter Back     alignment and domain information
>TIGR00893 2A0114 d-galactonate transporter Back     alignment and domain information
>PRK12307 putative sialic acid transporter; Provisional Back     alignment and domain information
>PF03825 Nuc_H_symport: Nucleoside H+ symporter Back     alignment and domain information
>TIGR00899 2A0120 sugar efflux transporter Back     alignment and domain information
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family Back     alignment and domain information
>PRK09705 cynX putative cyanate transporter; Provisional Back     alignment and domain information
>PRK15011 sugar efflux transporter B; Provisional Back     alignment and domain information
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions Back     alignment and domain information
>TIGR00879 SP MFS transporter, sugar porter (SP) family Back     alignment and domain information
>TIGR00895 2A0115 benzoate transport Back     alignment and domain information
>PRK11010 ampG muropeptide transporter; Validated Back     alignment and domain information
>PRK03633 putative MFS family transporter protein; Provisional Back     alignment and domain information
>TIGR00892 2A0113 monocarboxylate transporter 1 Back     alignment and domain information
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK09528 lacY galactoside permease; Reviewed Back     alignment and domain information
>PRK03699 putative transporter; Provisional Back     alignment and domain information
>PRK12382 putative transporter; Provisional Back     alignment and domain information
>PRK10642 proline/glycine betaine transporter; Provisional Back     alignment and domain information
>TIGR00900 2A0121 H+ Antiporter protein Back     alignment and domain information
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms Back     alignment and domain information
>PRK09874 drug efflux system protein MdtG; Provisional Back     alignment and domain information
>TIGR00806 rfc RFC reduced folate carrier Back     alignment and domain information
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family Back     alignment and domain information
>TIGR00898 2A0119 cation transport protein Back     alignment and domain information
>PRK10406 alpha-ketoglutarate transporter; Provisional Back     alignment and domain information
>PRK09952 shikimate transporter; Provisional Back     alignment and domain information
>TIGR00889 2A0110 nucleoside transporter Back     alignment and domain information
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter Back     alignment and domain information
>PRK10077 xylE D-xylose transporter XylE; Provisional Back     alignment and domain information
>TIGR00891 2A0112 putative sialic acid transporter Back     alignment and domain information
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional Back     alignment and domain information
>PRK15402 multidrug efflux system translocase MdfA; Provisional Back     alignment and domain information
>PRK10077 xylE D-xylose transporter XylE; Provisional Back     alignment and domain information
>TIGR00897 2A0118 polyol permease family Back     alignment and domain information
>PTZ00207 hypothetical protein; Provisional Back     alignment and domain information
>PRK11663 regulatory protein UhpC; Provisional Back     alignment and domain information
>PRK09669 putative symporter YagG; Provisional Back     alignment and domain information
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK09556 uhpT sugar phosphate antiporter; Reviewed Back     alignment and domain information
>TIGR00896 CynX cyanate transporter Back     alignment and domain information
>TIGR00881 2A0104 phosphoglycerate transporter family protein Back     alignment and domain information
>PF13347 MFS_2: MFS/sugar transport protein Back     alignment and domain information
>PRK10504 putative transporter; Provisional Back     alignment and domain information
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions Back     alignment and domain information
>TIGR01272 gluP glucose/galactose transporter Back     alignment and domain information
>PRK15075 citrate-proton symporter; Provisional Back     alignment and domain information
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated Back     alignment and domain information
>TIGR00903 2A0129 major facilitator 4 family protein Back     alignment and domain information
>TIGR00902 2A0127 phenyl proprionate permease family protein Back     alignment and domain information
>PRK03545 putative arabinose transporter; Provisional Back     alignment and domain information
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily Back     alignment and domain information
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional Back     alignment and domain information
>TIGR00882 2A0105 oligosaccharide:H+ symporter Back     alignment and domain information
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional Back     alignment and domain information
>PRK10429 melibiose:sodium symporter; Provisional Back     alignment and domain information
>TIGR00788 fbt folate/biopterin transporter Back     alignment and domain information
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK09848 glucuronide transporter; Provisional Back     alignment and domain information
>PLN00028 nitrate transmembrane transporter; Provisional Back     alignment and domain information
>PRK10091 MFS transport protein AraJ; Provisional Back     alignment and domain information
>PRK10642 proline/glycine betaine transporter; Provisional Back     alignment and domain information
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily Back     alignment and domain information
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>PRK15034 nitrate/nitrite transport protein NarU; Provisional Back     alignment and domain information
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial Back     alignment and domain information
>PRK10054 putative transporter; Provisional Back     alignment and domain information
>TIGR02332 HpaX 4-hydroxyphenylacetate permease Back     alignment and domain information
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) Back     alignment and domain information
>TIGR00901 2A0125 AmpG-related permease Back     alignment and domain information
>COG2270 Permeases of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>PRK11195 lysophospholipid transporter LplT; Provisional Back     alignment and domain information
>TIGR00887 2A0109 phosphate:H+ symporter Back     alignment and domain information
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] Back     alignment and domain information
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) Back     alignment and domain information
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK14995 methyl viologen resistance protein SmvA; Provisional Back     alignment and domain information
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00887 2A0109 phosphate:H+ symporter Back     alignment and domain information
>TIGR00712 glpT glycerol-3-phosphate transporter Back     alignment and domain information
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00788 fbt folate/biopterin transporter Back     alignment and domain information
>PRK11462 putative transporter; Provisional Back     alignment and domain information
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query415
3o7q_A438 L-fucose-proton symporter; transporter, multi-PASS 98.95
1pw4_A451 Glycerol-3-phosphate transporter; transmembrane, i 98.83
2gfp_A375 EMRD, multidrug resistance protein D; membrane pro 98.36
4aps_A 491 DI-OR tripeptide H+ symporter; transport protein, 97.92
2cfq_A417 Lactose permease; transport, transport mechanism, 97.85
1pw4_A451 Glycerol-3-phosphate transporter; transmembrane, i 96.95
2xut_A 524 Proton/peptide symporter family protein; transport 96.74
2cfq_A417 Lactose permease; transport, transport mechanism, 95.91
3o7q_A438 L-fucose-proton symporter; transporter, multi-PASS 95.25
4aps_A491 DI-OR tripeptide H+ symporter; transport protein, 94.13
4gc0_A491 D-xylose-proton symporter; MFS, transport protein; 93.86
2gfp_A375 EMRD, multidrug resistance protein D; membrane pro 80.3
4gc0_A 491 D-xylose-proton symporter; MFS, transport protein; 80.18
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Back     alignment and structure
Probab=98.95  E-value=3.6e-06  Score=82.94  Aligned_cols=274  Identities=9%  Similarity=-0.011  Sum_probs=156.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhhhhhhcccC--cCchhhHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHH
Q 014982           27 TSALLHSSSCFFFILSAYFVVLPLRDEGAISLG--LSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFS  104 (415)
Q Consensus        27 ~~~~l~~~l~~F~Il~~y~iLRpirDsl~vs~G--ae~LP~l~~~t~~~~ll~~~lys~L~~~~r~sr~rl~~~i~~fF~  104 (415)
                      ...++...+.+|+..+.+...-|+-..+.-..|  .+++-++.........+..++.+++.+  |++|||.+......++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~d--r~g~r~~l~~~~~~~~  102 (438)
T 3o7q_A           25 IIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMK--KLSYKAGIITGLFLYA  102 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHH--HSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHH--HhcchHHHHHHHHHHH
Confidence            345555566666666666666655444333333  445666666667788889999999999  9999999877666654


Q ss_pred             HHHHHHHHHHHhhccccccchhhhhhhhhhhhccccccCCCccccccCCCCCCccccccccchhhhhHHHHHHHHHHHHH
Q 014982          105 VSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLI  184 (415)
Q Consensus       105 ~~ll~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~W~y~~~~~~FYiw~~vfnl~  184 (415)
                      +..+++... ....                          +             .|     .+.    +..+...+..-.
T Consensus       103 ~~~~~~~~~-~~~~--------------------------~-------------~~-----~l~----~~~~l~G~~~~~  133 (438)
T 3o7q_A          103 LGAALFWPA-AEIM--------------------------N-------------YT-----LFL----VGLFIIAAGLGC  133 (438)
T ss_dssp             HHHHHHHHH-HHTT--------------------------C-------------HH-----HHH----HHHHHHHHHHHH
T ss_pred             HHHHHHHhc-cccc--------------------------c-------------HH-----HHH----HHHHHHHhhHHH
Confidence            444433221 1110                          0             12     111    122222332223


Q ss_pred             HHHHHHHHHHhhcCccchhHHHHHHHHHHhHHHHHhHHHHHHHH-HH-hH------------------------H--H-H
Q 014982          185 TISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FL-GP------------------------Y--L-L  235 (415)
Q Consensus       185 ~~slFWsfandif~~~eAKRlygli~aGg~lG~I~Gg~l~~~la-~~-g~------------------------~--L-l  235 (415)
                      .....-..++|.++.+|-.+..++..++.++|.++|+.+...+. .. +.                        +  . +
T Consensus       134 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~  213 (438)
T 3o7q_A          134 LETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYM  213 (438)
T ss_dssp             HHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHH
Confidence            33344567899999999999999999999999999998877765 22 11                        2  2 2


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcccchHhhHHHHhhch
Q 014982          236 LFAACLMELAAQSSKGIYKEIPRRPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFSSN  315 (415)
Q Consensus       236 lvaa~ll~la~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~g~~~I~~S~  315 (415)
                      ..+++.+. .......  ....+          .  ++  +  ..                +++.+.+..++++.++++|
T Consensus       214 ~~~~~~~~-~~~~~~~--~~~p~----------~--~~--~--~~----------------~~~~~~~~~~~~~~~~~~~  258 (438)
T 3o7q_A          214 IIVAIVLL-VALLIML--TKFPA----------L--QS--D--NH----------------SDAKQGSFSASLSRLARIR  258 (438)
T ss_dssp             HHHHHHHH-HHHHHHH--CCCCC----------C--TT--T--CC----------------CCSSTTSHHHHHHHHTTCS
T ss_pred             HHHHHHHH-HHHHHHH--HcCCc----------c--cc--c--cc----------------ccccccchhhhHHHHHhCh
Confidence            22222221 1111111  11100          0  00  0  00                0000124567788899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcHHHHHHH
Q 014982          316 YLLSVSLFLWLSAVVSSFFYFQKVTV-IAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTYAACRLGFAMFFYL  389 (415)
Q Consensus       316 YL~~Ia~~v~l~~v~~tlv~f~~~~~-v~~~~~d~~~~t~f~g~~~~~~~i~tl~~qlf~t~iirrlG~~~~l~~  389 (415)
                      .+...++...++......+....... .++.+.-+++.....   ....++..++..++...+.+|+|-+..+.+
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~  330 (438)
T 3o7q_A          259 HWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANY---LTGTMVCFFIGRFTGTWLISRFAPHKVLAA  330 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHH---HHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence            99988888777776665554444455 556554333333333   333445555555554447899998887644
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Back     alignment and structure
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Back     alignment and structure
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Back     alignment and structure
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Back     alignment and structure
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Back     alignment and structure
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Back     alignment and structure
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Back     alignment and structure
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Back     alignment and structure
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Back     alignment and structure
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* Back     alignment and structure
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Back     alignment and structure
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query415
d1pw4a_ 447 Glycerol-3-phosphate transporter {Escherichia coli 98.85
d1pv7a_417 Lactose permease {Escherichia coli [TaxId: 562]} 98.36
d1pv7a_417 Lactose permease {Escherichia coli [TaxId: 562]} 96.81
d1pw4a_447 Glycerol-3-phosphate transporter {Escherichia coli 96.24
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.85  E-value=2.1e-06  Score=81.65  Aligned_cols=253  Identities=8%  Similarity=-0.028  Sum_probs=131.9

Q ss_pred             CcCchhhHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhhhhcc
Q 014982           59 GLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVS  138 (415)
Q Consensus        59 Gae~LP~l~~~t~~~~ll~~~lys~L~~~~r~sr~rl~~~i~~fF~~~ll~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~  138 (415)
                      ..+++.++.....+...+..++.|++.|  |++|++++........+..+++.+.-....                    
T Consensus        57 s~~~~g~~~s~~~~~~~~~~~~~G~l~D--r~g~r~~~~~~~~~~~~~~~~~~~~~~~~~--------------------  114 (447)
T d1pw4a_          57 SRGDLGFALSGISIAYGFSKFIMGSVSD--RSNPRVFLPAGLILAAAVMLFMGFVPWATS--------------------  114 (447)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHHHHHHHHCHHHHS--------------------
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCchHHHHHHHHHHHHHHhhccccchhhh--------------------
Confidence            4567788777777778888999999999  999999987665555444443333211110                    


Q ss_pred             ccccCCCccccccCCCCCCccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHhHHHH
Q 014982          139 SNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQL  218 (415)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~w~~~~W~y~~~~~~FYiw~~vfnl~~~slFWsfandif~~~eAKRlygli~aGg~lG~I  218 (415)
                            +             .|     .+.    +.-....+..-......-..++|.++.+|-.+..++.+.+.++|.+
T Consensus       115 ------~-------------~~-----~~~----~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~  166 (447)
T d1pw4a_         115 ------S-------------IA-----VMF----VLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGG  166 (447)
T ss_dssp             ------S-------------SS-----HHH----HHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHT
T ss_pred             ------h-------------HH-----HHH----HHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhh
Confidence                  0             11     111    1111222222223334556789999999988999999999999999


Q ss_pred             HhHHHHHHHH-HHhH--H-HHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 014982          219 FGSLFAAGMA-FLGP--Y-LLLFAACLMELAAQSSKGIYKEIPRRPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSST  294 (415)
Q Consensus       219 ~Gg~l~~~la-~~g~--~-Lllvaa~ll~la~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (415)
                      +|+.+..... ..+.  + ..+.+.+.+. .........+...+..       ..+.+.+.+++..+        ..+  
T Consensus       167 i~~~~~~~~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~--------~~~--  228 (447)
T d1pw4a_         167 IPPLLFLLGMAWFNDWHAALYMPAFCAIL-VALFAFAMMRDTPQSC-------GLPPIEEYKNDYPD--------DYN--  228 (447)
T ss_dssp             SHHHHHHHHHHHTCCSTTCTHHHHHHHHH-HHHHHHHHCCCSSTTT-------CCCSCTTTCCC----------------
T ss_pred             hhhhhhhhHhhhhhcccccchhhhhhHHH-HHHHHHHhcccchhhc-------ccchhhhhhhhccc--------chh--
Confidence            9998876654 3332  2 2333222222 2222223222211110       00000000100000        000  


Q ss_pred             ccccCcccchHhhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014982          295 SIVKPHLWAILDGLRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSFIAVFILAGQLTL  374 (415)
Q Consensus       295 ~~~k~~~~~~~~g~~~I~~S~YL~~Ia~~v~l~~v~~tlv~f~~~~~v~~~~~d~~~~t~f~g~~~~~~~i~tl~~qlf~  374 (415)
                      ++.++.........+.++++|.+..++....++................+.+.-+.+.........   ++..++..++.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  305 (447)
T d1pw4a_         229 EKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLY---EYAGIPGTLLC  305 (447)
T ss_dssp             -------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred             hccccccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcc---hhhhhhhhhhh
Confidence            001111123345567889999999988888877766665555444445555443334443333333   33333334433


Q ss_pred             HHHHhHhc
Q 014982          375 TYAACRLG  382 (415)
Q Consensus       375 t~iirrlG  382 (415)
                      ..+.+|+|
T Consensus       306 g~~~~~~~  313 (447)
T d1pw4a_         306 GWMSDKVF  313 (447)
T ss_dssp             HHHHHHTS
T ss_pred             hhhhhhcc
Confidence            32555655
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Back     information, alignment and structure